BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037388
         (70 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1BCC|C Chain C, Cytochrome Bc1 Complex From Chicken
 pdb|3BCC|C Chain C, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
          From Chicken
 pdb|2BCC|C Chain C, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3CWB|C Chain C, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
          Analogue Of The Polyketide Crocacin-d
 pdb|3CWB|P Chain P, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
          Analogue Of The Polyketide Crocacin-d
 pdb|3H1H|C Chain C, Cytochrome Bc1 Complex From Chicken
 pdb|3H1H|P Chain P, Cytochrome Bc1 Complex From Chicken
 pdb|3H1I|C Chain C, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
          From Chicken
 pdb|3H1I|P Chain P, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
          From Chicken
 pdb|3H1J|C Chain C, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3H1J|P Chain P, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
 pdb|3H1K|C Chain C, Chicken Cytochrome Bc1 Complex With Zn++ And An
          Iodinated Derivative Of Kresoxim-Methyl Bound
 pdb|3H1K|P Chain P, Chicken Cytochrome Bc1 Complex With Zn++ And An
          Iodinated Derivative Of Kresoxim-Methyl Bound
 pdb|3H1L|C Chain C, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
          Qo And Qi Sites
 pdb|3H1L|P Chain P, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
          Qo And Qi Sites
 pdb|3L70|C Chain C, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
          Bound
 pdb|3L70|P Chain P, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
          Bound
 pdb|3L71|C Chain C, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
          Bound
 pdb|3L71|P Chain P, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
          Bound
 pdb|3L72|C Chain C, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
          Bound
 pdb|3L72|P Chain P, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
          Bound
 pdb|3L73|C Chain C, Cytochrome Bc1 Complex From Chicken With Triazolone
          Inhibitor
 pdb|3L73|P Chain P, Cytochrome Bc1 Complex From Chicken With Triazolone
          Inhibitor
 pdb|3L74|C Chain C, Cytochrome Bc1 Complex From Chicken With Famoxadone
          Bound
 pdb|3L74|P Chain P, Cytochrome Bc1 Complex From Chicken With Famoxadone
          Bound
 pdb|3L75|C Chain C, Cytochrome Bc1 Complex From Chicken With Fenamidone
          Bound
 pdb|3L75|P Chain P, Cytochrome Bc1 Complex From Chicken With Fenamidone
          Bound
          Length = 380

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 44 CIKALYAWLISNFLFHTGQHFFCCKFL 70
          C    Y WLI N   +    FF C FL
Sbjct: 71 CRNVQYGWLIRNLHANGASFFFICIFL 97


>pdb|3TGU|C Chain C, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
          Moa Inhibitor Bound
 pdb|3TGU|P Chain P, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
          Moa Inhibitor Bound
          Length = 380

 Score = 25.8 bits (55), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 44 CIKALYAWLISNFLFHTGQHFFCCKFL 70
          C    Y WLI N   +    FF C FL
Sbjct: 71 CRNVQYGWLIRNLHANGASFFFICIFL 97


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,123,429
Number of Sequences: 62578
Number of extensions: 63295
Number of successful extensions: 176
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 173
Number of HSP's gapped (non-prelim): 3
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)