BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037390
MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL
DERSSSLYDLLKVLCMIY

High Scoring Gene Products

Symbol, full name Information P value
AT5G17270 protein from Arabidopsis thaliana 3.4e-18
AT5G37130 protein from Arabidopsis thaliana 8.0e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037390
        (78 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2167165 - symbol:AT5G17270 species:3702 "Arabi...   232  3.4e-18   1
TAIR|locus:2166153 - symbol:AT5G37130 species:3702 "Arabi...   219  8.0e-17   1


>TAIR|locus:2167165 [details] [associations]
            symbol:AT5G17270 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0006406 "mRNA export from
            nucleus" evidence=RCA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
            evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
            [GO:0009909 "regulation of flower development" evidence=RCA]
            [GO:0010074 "maintenance of meristem identity" evidence=RCA]
            [GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
            "protein ubiquitination" evidence=RCA] [GO:0016571 "histone
            methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
            evidence=RCA] [GO:0045893 "positive regulation of transcription,
            DNA-dependent" evidence=RCA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 Pfam:PF13181 PROSITE:PS50005 PROSITE:PS50293
            SMART:SM00028 EMBL:CP002688 GenomeReviews:BA000015_GR
            eggNOG:COG0457 Gene3D:1.25.40.10 EMBL:AB005238 IPI:IPI00522610
            RefSeq:NP_197229.1 UniGene:At.54881 ProteinModelPortal:Q9FFI4
            SMR:Q9FFI4 PaxDb:Q9FFI4 PRIDE:Q9FFI4 EnsemblPlants:AT5G17270.1
            GeneID:831592 KEGG:ath:AT5G17270 TAIR:At5g17270
            HOGENOM:HOG000030273 InParanoid:Q9FFI4 OMA:RWESTRG PhylomeDB:Q9FFI4
            ProtClustDB:CLSN2686329 Genevestigator:Q9FFI4 Uniprot:Q9FFI4
        Length = 899

 Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query:     1 MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
             MSVGSDLLGKFS LQ +VFA++LL K +DLL + T      +R+ISWWL R+LL+HQR+L
Sbjct:   170 MSVGSDLLGKFSNLQHLVFARLLLFKLKDLLFEITSTETFEVRSISWWLVRVLLIHQRVL 229

Query:    61 DERSSSLYDLLKV 73
              ERSSSL+++L+V
Sbjct:   230 QERSSSLFEMLQV 242


>TAIR|locus:2166153 [details] [associations]
            symbol:AT5G37130 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0048046 "apoplast"
            evidence=IDA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
            EMBL:CP002688 GO:GO:0048046 GO:GO:0016740 Gene3D:1.25.40.10
            IPI:IPI00528958 RefSeq:NP_198529.3 UniGene:At.9476
            ProteinModelPortal:F4K5W3 SMR:F4K5W3 PRIDE:F4K5W3
            EnsemblPlants:AT5G37130.1 GeneID:833685 KEGG:ath:AT5G37130
            OMA:AWNNIAS Uniprot:F4K5W3
        Length = 877

 Score = 219 (82.2 bits), Expect = 8.0e-17, P = 8.0e-17
 Identities = 42/73 (57%), Positives = 58/73 (79%)

Query:     1 MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
             MS GSDLLGKFS LQ +VFA++LL+K +DLL + +      +R+ISWWL R+LL+HQR+L
Sbjct:   162 MSAGSDLLGKFSNLQHLVFARLLLLKLKDLLFETSASETFQLRSISWWLVRVLLIHQRVL 221

Query:    61 DERSSSLYDLLKV 73
              E SSSL+++L+V
Sbjct:   222 HEPSSSLFEMLQV 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        78   0.00091  102 3  11 22  0.44    28
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  483 (51 KB)
  Total size of DFA:  89 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.32u 0.17s 8.49t   Elapsed:  00:00:01
  Total cpu time:  8.32u 0.17s 8.49t   Elapsed:  00:00:01
  Start:  Sat May 11 12:00:43 2013   End:  Sat May 11 12:00:44 2013

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