BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037390
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1PR9|A Chain A, Human L-Xylulose Reductase Holoenzyme
 pdb|1PR9|B Chain B, Human L-Xylulose Reductase Holoenzyme
 pdb|1WNT|A Chain A, Strucutre Of The Tetrameric Form Of Human L-Xylulose
           Reductase
 pdb|1WNT|B Chain B, Strucutre Of The Tetrameric Form Of Human L-Xylulose
           Reductase
 pdb|1WNT|C Chain C, Strucutre Of The Tetrameric Form Of Human L-Xylulose
           Reductase
 pdb|1WNT|D Chain D, Strucutre Of The Tetrameric Form Of Human L-Xylulose
           Reductase
          Length = 244

 Score = 28.9 bits (63), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 8   LGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNG 41
           LGKF+ ++ +V A + L+  R  ++  + LPV G
Sbjct: 206 LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEG 239


>pdb|3D3W|B Chain B, Structure Of L-Xylulose Reductase With Bound Coenzyme,
           Phosphate And Hydroxide
          Length = 245

 Score = 28.9 bits (63), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 8   LGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNG 41
           LGKF+ ++ +V A + L+  R  ++  + LPV G
Sbjct: 207 LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEG 240


>pdb|3D3W|A Chain A, Structure Of L-Xylulose Reductase With Bound Coenzyme,
           Phosphate And Hydroxide
          Length = 244

 Score = 28.9 bits (63), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 8   LGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNG 41
           LGKF+ ++ +V A + L+  R  ++  + LPV G
Sbjct: 206 LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEG 239


>pdb|3C3P|A Chain A, Crystal Structure Of A Methyltransferase (Np_951602.1)
          From Geobacter Sulfurreducens At 1.90 A Resolution
 pdb|3C3P|B Chain B, Crystal Structure Of A Methyltransferase (Np_951602.1)
          From Geobacter Sulfurreducens At 1.90 A Resolution
 pdb|3C3P|C Chain C, Crystal Structure Of A Methyltransferase (Np_951602.1)
          From Geobacter Sulfurreducens At 1.90 A Resolution
          Length = 210

 Score = 25.8 bits (55), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 36 VLPVNGIRTISWWLTRLLLMHQRIL 60
          V+P +G+   SWW  R + +  R++
Sbjct: 61 VVPGDGLGCASWWFARAISISSRVV 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.141    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,961,260
Number of Sequences: 62578
Number of extensions: 57358
Number of successful extensions: 129
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 5
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)