BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037390
         (78 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5F3K0|TTC27_CHICK Tetratricopeptide repeat protein 27 OS=Gallus gallus GN=TTC27 PE=2
           SV=1
          Length = 844

 Score = 37.7 bits (86), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 17  IVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKV 73
           ++ A+++L+ +R  LS    LP        WW  R + +HQ++L+ERS  L+ L ++
Sbjct: 161 LLIARVVLVNSRHKLSSLQTLP--------WWTLRCVNIHQQLLEERSPELFTLAQM 209


>sp|Q8CD92|TTC27_MOUSE Tetratricopeptide repeat protein 27 OS=Mus musculus GN=Ttc27 PE=2
           SV=2
          Length = 847

 Score = 34.7 bits (78), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query: 39  VNGIRTISWWLTRLLLMHQRILDERSSSLYDLLK 72
           +  ++++ WW  R + +HQ++L+ERS  L+ L K
Sbjct: 179 LTALQSLPWWTLRYVNIHQQLLEERSPQLFALAK 212


>sp|Q17QZ7|TTC27_BOVIN Tetratricopeptide repeat protein 27 OS=Bos taurus GN=TTC27 PE=2
           SV=1
          Length = 847

 Score = 33.9 bits (76), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 22/32 (68%)

Query: 39  VNGIRTISWWLTRLLLMHQRILDERSSSLYDL 70
           +  I+++ WW  R + +HQ++L+ERS  L+ L
Sbjct: 179 LTAIQSLPWWTLRCVNIHQQLLEERSPQLFAL 210


>sp|Q6P3X3|TTC27_HUMAN Tetratricopeptide repeat protein 27 OS=Homo sapiens GN=TTC27 PE=1
           SV=1
          Length = 843

 Score = 32.7 bits (73), Expect = 0.70,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 39  VNGIRTISWWLTRLLLMHQRILDERSSSLYDL 70
           +  I+++ WW  R + +HQ +L+ERS  L+ L
Sbjct: 175 LTAIQSLPWWTLRCVNIHQHLLEERSPLLFTL 206


>sp|Q5RBW9|TTC27_PONAB Tetratricopeptide repeat protein 27 OS=Pongo abelii GN=TTC27 PE=2
           SV=1
          Length = 843

 Score = 32.7 bits (73), Expect = 0.71,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 39  VNGIRTISWWLTRLLLMHQRILDERSSSLYDL 70
           +  I+++ WW  R + +HQ +L+ERS  L+ L
Sbjct: 175 LTAIQSLPWWTLRCVNIHQHLLEERSPLLFTL 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.329    0.141    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,146,305
Number of Sequences: 539616
Number of extensions: 759932
Number of successful extensions: 1842
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1837
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)