Query 037390
Match_columns 78
No_of_seqs 34 out of 36
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 11:44:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1128 Uncharacterized conser 99.6 2.7E-16 5.9E-21 133.3 5.5 76 1-76 107-182 (777)
2 PHA00425 DNA packaging protein 58.9 14 0.0003 25.0 3.1 16 61-76 29-44 (88)
3 PF00191 Annexin: Annexin; In 28.3 58 0.0013 18.5 2.1 21 58-78 22-43 (66)
4 KOG2026 Spindle pole body prot 26.5 41 0.00089 28.4 1.6 19 60-78 420-438 (442)
5 smart00464 LON Found in ATP-de 23.6 47 0.001 20.3 1.1 23 44-66 57-83 (92)
6 PF11123 DNA_Packaging_2: DNA 22.5 1.3E+02 0.0029 20.1 3.1 15 61-75 27-41 (82)
7 PF13542 HTH_Tnp_ISL3: Helix-t 21.0 68 0.0015 17.5 1.3 33 19-54 16-48 (52)
8 TIGR02174 CXXU_selWTH selT/sel 18.9 89 0.0019 19.0 1.7 16 48-63 11-26 (72)
9 COG3526 Uncharacterized protei 18.6 1.2E+02 0.0026 20.8 2.4 23 44-66 14-36 (99)
10 COG2956 Predicted N-acetylgluc 18.5 1.4E+02 0.0029 25.0 3.1 27 50-76 86-119 (389)
No 1
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.63 E-value=2.7e-16 Score=133.31 Aligned_cols=76 Identities=53% Similarity=0.836 Sum_probs=73.7
Q ss_pred CCCccchhhhhhhHHHHHHHHHHHHHhhccccccccCcccccchHHHHHHHHHHHHHHHHhhhChhHHHHHHHHhh
Q 037390 1 MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCM 76 (78)
Q Consensus 1 ms~G~~l~gk~s~p~~Lv~Ar~lL~~~k~l~~~~~~~~~~~~qs~~WW~lR~~~~hQqiLeErSpsLfdl~q~~~~ 76 (78)
|++||++.|+|.+.+++++||.+|.+++|+.++.+++....+++++||++|++++||.+|+||||+||..+|+|+.
T Consensus 107 ~~~~s~l~~~~~s~~~l~~a~~ll~~L~d~~~~~~~~~~~~l~~~~wW~~r~l~~hq~vl~E~s~~l~~~l~v~~~ 182 (777)
T KOG1128|consen 107 MSSGSDLLGKFKSLQLLLFARLLLEKLKDLLPEITITETFILRVLSWWLLRLLLIHQHVLQERSPSLFMKLQVYFA 182 (777)
T ss_pred HhHHHHhcccccchHHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhHHHHHhcccchHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PHA00425 DNA packaging protein, small subunit
Probab=58.93 E-value=14 Score=25.02 Aligned_cols=16 Identities=25% Similarity=0.480 Sum_probs=12.0
Q ss_pred hhhChhHHHHHHHHhh
Q 037390 61 DERSSSLYDLLKVLCM 76 (78)
Q Consensus 61 eErSpsLfdl~q~~~~ 76 (78)
|.||||||.-.-.|.+
T Consensus 29 ekRtPQLYnAIgKlL~ 44 (88)
T PHA00425 29 EKRTPQLYNAIGKLLD 44 (88)
T ss_pred cccChHHHHHHHHHHH
Confidence 5699999987766643
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=28.27 E-value=58 Score=18.50 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=16.2
Q ss_pred HHHhhhCh-hHHHHHHHHhhhC
Q 037390 58 RILDERSS-SLYDLLKVLCMIY 78 (78)
Q Consensus 58 qiLeErSp-sLfdl~q~~~~~~ 78 (78)
+|+-.||| ++..+.+.|...|
T Consensus 22 ~Il~~rs~~ql~~i~~~Y~~~~ 43 (66)
T PF00191_consen 22 EILCTRSPAQLRAIKQAYKKKY 43 (66)
T ss_dssp HHHHHSTHHHHHHHHHHHHHHH
T ss_pred hHHhhhcccccceeehhhhhhh
Confidence 46667887 5888999888765
No 4
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=26.48 E-value=41 Score=28.36 Aligned_cols=19 Identities=21% Similarity=0.287 Sum_probs=17.4
Q ss_pred HhhhChhHHHHHHHHhhhC
Q 037390 60 LDERSSSLYDLLKVLCMIY 78 (78)
Q Consensus 60 LeErSpsLfdl~q~~~~~~ 78 (78)
.+||+|++--|.+.||+||
T Consensus 420 v~e~~~qmi~L~Es~iQiw 438 (442)
T KOG2026|consen 420 VTERLPQMIFLKESFIQIW 438 (442)
T ss_pred hhhhhhHHHHHHHHHHHHH
Confidence 5799999999999999986
No 5
>smart00464 LON Found in ATP-dependent protease La (LON). N-terminal domain of the ATP-dependent protease La (LON), present also in other bacterial ORFs.
Probab=23.60 E-value=47 Score=20.34 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=17.6
Q ss_pred hHHHHHHHHH----HHHHHHHhhhChh
Q 037390 44 TISWWLTRLL----LMHQRILDERSSS 66 (78)
Q Consensus 44 s~~WW~lR~~----~~hQqiLeErSps 66 (78)
-++||.+=.. --.|++||++|+.
T Consensus 57 ~~~~~~a~~~~~~~~~~q~lL~~~~~~ 83 (92)
T smart00464 57 PLSDTIAALMPLELHEKQELLELEGTN 83 (92)
T ss_pred hhhHHHhhcccccHHHHHHHHhcccHH
Confidence 5788887554 5689999998874
No 6
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.49 E-value=1.3e+02 Score=20.11 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=11.5
Q ss_pred hhhChhHHHHHHHHh
Q 037390 61 DERSSSLYDLLKVLC 75 (78)
Q Consensus 61 eErSpsLfdl~q~~~ 75 (78)
|.||||||.-+-.+.
T Consensus 27 ekRsPQLYnAI~k~L 41 (82)
T PF11123_consen 27 EKRSPQLYNAIGKLL 41 (82)
T ss_pred hhcChHHHHHHHHHH
Confidence 559999998776654
No 7
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=20.99 E-value=68 Score=17.45 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHHhhccccccccCcccccchHHHHHHHHHH
Q 037390 19 FAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLL 54 (78)
Q Consensus 19 ~Ar~lL~~~k~l~~~~~~~~~~~~qs~~WW~lR~~~ 54 (78)
+...++..+++. .|...+...--++|++.+-+.
T Consensus 16 ~~~~i~~~~~~~---~s~~~vA~~~~vs~~TV~ri~ 48 (52)
T PF13542_consen 16 LEQYILKLLRES---RSFKDVARELGVSWSTVRRIF 48 (52)
T ss_pred HHHHHHHHHhhc---CCHHHHHHHHCCCHHHHHHHH
Confidence 444555555544 355667778889999998664
No 8
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=18.89 E-value=89 Score=19.01 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 037390 48 WLTRLLLMHQRILDER 63 (78)
Q Consensus 48 W~lR~~~~hQqiLeEr 63 (78)
|..|...++|.++++-
T Consensus 11 y~~Ra~~l~q~L~~~F 26 (72)
T TIGR02174 11 YKPRAAWLKQELLEEF 26 (72)
T ss_pred ChHHHHHHHHHHHHHC
Confidence 9999999999999863
No 9
>COG3526 Uncharacterized protein conserved in bacteria [Posttranslational modification, protein turnover, chaperones]
Probab=18.55 E-value=1.2e+02 Score=20.83 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhChh
Q 037390 44 TISWWLTRLLLMHQRILDERSSS 66 (78)
Q Consensus 44 s~~WW~lR~~~~hQqiLeErSps 66 (78)
+--=|++|..++-|.+|.--+..
T Consensus 14 tQCnWlLRa~WmaQElL~TF~~d 36 (99)
T COG3526 14 TQCNWLLRAAWMAQELLSTFADD 36 (99)
T ss_pred chhhHHHHHHHHHHHHHHHHHhh
Confidence 33459999999999998654443
No 10
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=18.53 E-value=1.4e+02 Score=25.00 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhh-------hChhHHHHHHHHhh
Q 037390 50 TRLLLMHQRILDE-------RSSSLYDLLKVLCM 76 (78)
Q Consensus 50 lR~~~~hQqiLeE-------rSpsLfdl~q~~~~ 76 (78)
=|.+.+||.+++- |---||.|++.||.
T Consensus 86 DRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 86 DRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 3889999999863 33458899999985
Done!