Query 037390
Match_columns 78
No_of_seqs 34 out of 36
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:09:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037390.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037390hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ojl_A Hypothetical protein; B 29.4 24 0.00082 23.2 1.6 23 42-64 15-37 (108)
2 3dex_A SAV_2001; alpha-beta pr 27.9 27 0.00091 23.0 1.6 25 42-66 19-43 (107)
3 2k0n_A Mediator of RNA polymer 26.8 32 0.0011 22.2 1.8 18 60-77 9-26 (85)
4 3sjq_C Small conductance calci 24.6 61 0.0021 20.8 2.8 24 50-73 55-78 (87)
5 2npb_A Selenoprotein W; struct 20.4 67 0.0023 20.2 2.4 16 48-63 15-30 (96)
6 2fa8_A Hypothetical protein AT 20.0 47 0.0016 21.4 1.6 23 43-65 15-37 (105)
7 2oka_A Hypothetical protein; P 19.7 48 0.0016 21.4 1.6 23 42-64 12-34 (104)
8 2p0g_A Selenoprotein W-related 19.1 51 0.0017 21.3 1.6 23 42-64 10-32 (105)
9 2ebz_A RGS12, regulator of G-p 18.6 84 0.0029 19.9 2.6 19 57-75 95-113 (155)
10 2dlr_A RGS10, regulator of G-p 17.0 83 0.0028 19.8 2.2 18 58-75 94-111 (149)
No 1
>2ojl_A Hypothetical protein; BPR68, NESG, Q7WAF1, structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium; 2.10A {Bordetella parapertussis}
Probab=29.45 E-value=24 Score=23.16 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=18.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhhC
Q 037390 42 IRTISWWLTRLLLMHQRILDERS 64 (78)
Q Consensus 42 ~qs~~WW~lR~~~~hQqiLeErS 64 (78)
-++---|++|+.++.|.+|..-+
T Consensus 15 YC~~C~w~lRa~~laqeLl~tF~ 37 (108)
T 2ojl_A 15 YCTQCQWLLRAAWMAQELLSTFG 37 (108)
T ss_dssp EETTTTCHHHHHHHHHHHHHHHG
T ss_pred ECCCCCChHHHHHHHHHHHHhcC
Confidence 34556799999999999998744
No 2
>3dex_A SAV_2001; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Streptomyces avermitilis} SCOP: c.47.1.0
Probab=27.91 E-value=27 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=19.9
Q ss_pred cchHHHHHHHHHHHHHHHHhhhChh
Q 037390 42 IRTISWWLTRLLLMHQRILDERSSS 66 (78)
Q Consensus 42 ~qs~~WW~lR~~~~hQqiLeErSps 66 (78)
-++---|++|+.++.|.+|.+-...
T Consensus 19 YC~~C~w~lRa~~laqeLl~tF~~~ 43 (107)
T 3dex_A 19 YCTQCRWLPRAAWLAQELLTTFETE 43 (107)
T ss_dssp EETTTTCHHHHHHHHHHHHHHSTTT
T ss_pred ECCCCCChHHHHHHHHHHHHhcccc
Confidence 4566679999999999999875543
No 3
>2k0n_A Mediator of RNA polymerase II transcription subunit 15; protein, activator, nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae}
Probab=26.76 E-value=32 Score=22.23 Aligned_cols=18 Identities=39% Similarity=0.456 Sum_probs=16.3
Q ss_pred HhhhChhHHHHHHHHhhh
Q 037390 60 LDERSSSLYDLLKVLCMI 77 (78)
Q Consensus 60 LeErSpsLfdl~q~~~~~ 77 (78)
.+|||--.-+|+|+.|+|
T Consensus 9 ~~ERsknv~eL~qiLmDI 26 (85)
T 2k0n_A 9 NAERAKNVNGLLQVLMDI 26 (85)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 479999999999999987
No 4
>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}
Probab=24.63 E-value=61 Score=20.80 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHH
Q 037390 50 TRLLLMHQRILDERSSSLYDLLKV 73 (78)
Q Consensus 50 lR~~~~hQqiLeErSpsLfdl~q~ 73 (78)
+|.+=+.|+-|.|-+.+|.|+++.
T Consensus 55 lR~vk~eqRkL~DqaNtlvDlaK~ 78 (87)
T 3sjq_C 55 LRSVKMEQRKLNDQANTLVDLAKT 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHH
Confidence 788999999999999999999875
No 5
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=20.38 E-value=67 Score=20.18 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhh
Q 037390 48 WLTRLLLMHQRILDER 63 (78)
Q Consensus 48 W~lR~~~~hQqiLeEr 63 (78)
|..|+.++.|.++++-
T Consensus 15 y~~ra~~laqeLl~~F 30 (96)
T 2npb_A 15 YKPKYLQLKEKLEHEF 30 (96)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhC
Confidence 9999999999999764
No 6
>2fa8_A Hypothetical protein ATU0228; ALPH-beta structure, 4 helix bundle, structural genomics, PS protein structure initiative; 1.90A {Agrobacterium tumefaciens str} SCOP: c.47.1.23
Probab=20.04 E-value=47 Score=21.38 Aligned_cols=23 Identities=39% Similarity=0.374 Sum_probs=18.2
Q ss_pred chHHHHHHHHHHHHHHHHhhhCh
Q 037390 43 RTISWWLTRLLLMHQRILDERSS 65 (78)
Q Consensus 43 qs~~WW~lR~~~~hQqiLeErSp 65 (78)
++---|..|+.++.|.++++-+.
T Consensus 15 C~~C~~~~Ra~~laqeLl~tF~~ 37 (105)
T 2fa8_A 15 CTQCNWLLRAGWMAQEILQTFAS 37 (105)
T ss_dssp ETTTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHHHHHHcCc
Confidence 44456999999999999987544
No 7
>2oka_A Hypothetical protein; PAR82, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.50A {Pseudomonas aeruginosa} PDB: 2obk_A
Probab=19.73 E-value=48 Score=21.39 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.2
Q ss_pred cchHHHHHHHHHHHHHHHHhhhC
Q 037390 42 IRTISWWLTRLLLMHQRILDERS 64 (78)
Q Consensus 42 ~qs~~WW~lR~~~~hQqiLeErS 64 (78)
.++---|..|+.++.|.++.+-+
T Consensus 12 YC~~C~~~~Ra~~laqeLl~tF~ 34 (104)
T 2oka_A 12 YCTQCQWLLRAAWLAQELLSTFA 34 (104)
T ss_dssp EETTTTCHHHHHHHHHHHHHHST
T ss_pred ECCCCCChHHHHHHHHHHHHHcC
Confidence 34555799999999999997643
No 8
>2p0g_A Selenoprotein W-related protein; VCR75, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Vibrio cholerae}
Probab=19.10 E-value=51 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhC
Q 037390 42 IRTISWWLTRLLLMHQRILDERS 64 (78)
Q Consensus 42 ~qs~~WW~lR~~~~hQqiLeErS 64 (78)
.++---|..|+.++.|.++.+-.
T Consensus 10 YC~~C~w~~Ra~~laqeLl~tF~ 32 (105)
T 2p0g_A 10 YCRQCNWMLRSAWLSQELLHTFS 32 (105)
T ss_dssp EETTTTCHHHHHHHHHHHHHHTT
T ss_pred ECCCCCChHHHHHHHHHHHHHcC
Confidence 34555699999999999997643
No 9
>2ebz_A RGS12, regulator of G-protein signaling 12; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.65 E-value=84 Score=19.95 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=15.9
Q ss_pred HHHHhhhChhHHHHHHHHh
Q 037390 57 QRILDERSSSLYDLLKVLC 75 (78)
Q Consensus 57 QqiLeErSpsLfdl~q~~~ 75 (78)
++++++..|.+||-||..+
T Consensus 95 ~~~~~~p~~~~Fd~aq~~V 113 (155)
T 2ebz_A 95 DDVLRAPHPDMFKEQQLQI 113 (155)
T ss_dssp HHHHHSCCTTHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHH
Confidence 5677889999999998765
No 10
>2dlr_A RGS10, regulator of G-protein signaling 10; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=16.99 E-value=83 Score=19.78 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=14.8
Q ss_pred HHHhhhChhHHHHHHHHh
Q 037390 58 RILDERSSSLYDLLKVLC 75 (78)
Q Consensus 58 qiLeErSpsLfdl~q~~~ 75 (78)
+.+++..|.+||-||..+
T Consensus 94 ~~~~~p~~~~Fd~aq~~V 111 (149)
T 2dlr_A 94 KILEEPHPLMFQKLQDQI 111 (149)
T ss_dssp HHHHSCCTTHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHH
Confidence 456788999999998765
Done!