BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037392
         (389 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NR9|A Chain A, Crystal Structure Of Glpg, Rhomboid Peptidase From
           Haemophilus Influenzae
 pdb|3ODJ|A Chain A, Crystal Structure Of H. Influenzae Rhomboid Glpg With
           Disordered Loop 4, Helix 5 And Loop 5
          Length = 196

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 133 WRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIIS 178
           WR I+   +H    HIL N+    + G  +E+ FG +++ +LY+++
Sbjct: 51  WRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVA 96


>pdb|3KF5|A Chain A, Structure Of Invertase From Schwanniomyces Occidentalis
 pdb|3KF5|B Chain B, Structure Of Invertase From Schwanniomyces Occidentalis
          Length = 512

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 74  VITMYVNNCPKNSVSCVARFL-GRFSFQPFKENPLLGPSS 112
           ++ +Y NN P N    +A  L G ++F  ++ NP++  SS
Sbjct: 112 IVAIYTNNIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSS 151


>pdb|3U75|A Chain A, Structure Of E230a-Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Fructosylnystose
 pdb|3U75|B Chain B, Structure Of E230a-Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Fructosylnystose
 pdb|3U75|C Chain C, Structure Of E230a-Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Fructosylnystose
 pdb|3U75|D Chain D, Structure Of E230a-Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Fructosylnystose
          Length = 535

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 74  VITMYVNNCPKNSVSCVARFL-GRFSFQPFKENPLLGPSS 112
           ++ +Y NN P N    +A  L G ++F  ++ NP++  SS
Sbjct: 135 IVAIYTNNIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSS 174


>pdb|3KF3|A Chain A, Structure Of Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Fructose
 pdb|3KF3|B Chain B, Structure Of Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Fructose
          Length = 509

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 74  VITMYVNNCPKNSVSCVARFL-GRFSFQPFKENPLLGPSS 112
           ++ +Y NN P N    +A  L G ++F  ++ NP++  SS
Sbjct: 109 IVAIYTNNIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSS 148


>pdb|3U14|A Chain A, Structure Of D50a-Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Inulin
 pdb|3U14|B Chain B, Structure Of D50a-Fructofuranosidase From Schwanniomyces
           Occidentalis Complexed With Inulin
          Length = 535

 Score = 30.0 bits (66), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 74  VITMYVNNCPKNSVSCVARFL-GRFSFQPFKENPLLGPSS 112
           ++ +Y NN P N    +A  L G ++F  ++ NP++  SS
Sbjct: 135 IVAIYTNNIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSS 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.439 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,475,423
Number of Sequences: 62578
Number of extensions: 309962
Number of successful extensions: 611
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 602
Number of HSP's gapped (non-prelim): 13
length of query: 389
length of database: 14,973,337
effective HSP length: 101
effective length of query: 288
effective length of database: 8,652,959
effective search space: 2492052192
effective search space used: 2492052192
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 52 (24.6 bits)