Query 037392
Match_columns 389
No_of_seqs 364 out of 2005
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 11:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037392.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037392hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2289 Rhomboid family protei 100.0 4.6E-47 9.9E-52 365.7 9.3 274 54-335 35-316 (316)
2 PTZ00101 rhomboid-1 protease; 100.0 8.6E-36 1.9E-40 285.4 24.4 186 57-266 51-241 (278)
3 KOG2290 Rhomboid family protei 100.0 3.2E-36 6.9E-41 294.6 14.5 197 128-343 447-644 (652)
4 PRK10907 intramembrane serine 100.0 5.2E-27 1.1E-31 225.2 20.0 175 58-265 93-270 (276)
5 COG0705 Membrane associated se 99.9 9.8E-24 2.1E-28 198.0 17.9 184 58-266 16-212 (228)
6 PF01694 Rhomboid: Rhomboid fa 99.9 5.3E-24 1.1E-28 185.1 7.8 140 128-267 2-144 (145)
7 KOG2632 Rhomboid family protei 99.6 4.5E-15 9.8E-20 138.8 13.9 137 126-262 47-195 (258)
8 KOG2980 Integral membrane prot 98.7 9E-09 2E-13 98.4 4.9 175 59-267 115-303 (310)
9 PF08551 DUF1751: Eukaryotic i 98.2 1.2E-06 2.6E-11 71.9 3.8 59 131-189 7-65 (99)
10 PF04511 DER1: Der1-like famil 97.8 0.00019 4.1E-09 66.1 11.0 68 121-188 31-102 (197)
11 KOG0858 Predicted membrane pro 97.8 0.00034 7.4E-09 65.3 12.2 101 54-187 8-112 (239)
12 KOG2890 Predicted membrane pro 97.0 0.0018 4E-08 62.4 6.6 132 131-268 66-218 (326)
13 KOG4463 Uncharacterized conser 95.8 0.016 3.6E-07 54.9 5.4 62 127-189 46-107 (323)
14 COG5291 Predicted membrane pro 94.2 0.18 3.9E-06 47.6 7.5 82 55-169 16-99 (313)
15 PF11992 DUF3488: Domain of un 78.9 71 0.0015 31.6 16.2 27 240-266 119-145 (325)
16 COG4452 CreD Inner membrane pr 74.5 40 0.00087 34.2 11.1 108 162-272 315-429 (443)
17 COG0705 Membrane associated se 69.2 4.9 0.00011 37.4 3.4 76 128-217 136-211 (228)
18 TIGR02854 spore_II_GA sigma-E 68.4 85 0.0018 30.6 11.9 31 146-176 11-41 (288)
19 PRK11715 inner membrane protei 63.1 97 0.0021 32.2 11.6 106 163-271 322-434 (436)
20 PRK02983 lysS lysyl-tRNA synth 61.8 1.4E+02 0.0031 34.7 13.8 21 249-269 114-134 (1094)
21 PF06123 CreD: Inner membrane 61.8 1.1E+02 0.0025 31.7 11.8 57 162-218 315-378 (430)
22 PF04892 VanZ: VanZ like famil 60.0 74 0.0016 26.5 8.7 23 243-265 106-128 (133)
23 PF03419 Peptidase_U4: Sporula 59.9 71 0.0015 31.0 9.7 29 146-174 11-39 (293)
24 PRK13108 prolipoprotein diacyl 59.7 82 0.0018 32.9 10.5 23 199-221 61-83 (460)
25 PHA03239 envelope glycoprotein 58.8 1.2E+02 0.0025 31.5 11.2 20 191-210 254-273 (429)
26 PHA03237 envelope glycoprotein 57.9 99 0.0021 32.0 10.5 19 191-209 248-266 (424)
27 PF01528 Herpes_glycop: Herpes 53.9 1.5E+02 0.0034 30.1 11.0 52 159-210 193-250 (374)
28 PF06609 TRI12: Fungal trichot 50.2 3.7E+02 0.008 29.2 14.0 41 147-188 87-127 (599)
29 PRK10263 DNA translocase FtsK; 50.0 76 0.0017 37.4 9.0 14 64-77 27-40 (1355)
30 PF09527 ATPase_gene1: Putativ 48.7 73 0.0016 22.7 5.8 41 146-186 8-49 (55)
31 KOG3817 Uncharacterized conser 48.0 2.6E+02 0.0056 28.4 11.1 34 191-224 158-191 (452)
32 PRK10263 DNA translocase FtsK; 47.3 5.7E+02 0.012 30.6 16.6 32 243-274 183-214 (1355)
33 PF06123 CreD: Inner membrane 46.5 2.7E+02 0.0058 28.9 11.7 21 58-78 298-318 (430)
34 KOG0255 Synaptic vesicle trans 43.3 2.8E+02 0.0061 28.6 11.7 43 145-188 125-167 (521)
35 COG4769 Predicted membrane pro 40.7 1.8E+02 0.004 26.2 8.1 25 240-264 138-162 (181)
36 PHA03242 envelope glycoprotein 38.5 4.7E+02 0.01 27.1 12.0 51 160-210 208-264 (428)
37 PF10225 DUF2215: Uncharacteri 38.1 3.6E+02 0.0079 25.7 12.3 19 286-304 124-142 (249)
38 COG1284 Uncharacterized conser 38.0 4E+02 0.0086 26.1 13.9 25 246-270 115-139 (289)
39 PRK09776 putative diguanylate 36.9 5.4E+02 0.012 29.3 13.5 14 172-185 4-17 (1092)
40 PF12669 P12: Virus attachment 35.3 79 0.0017 23.2 4.3 32 314-346 19-51 (58)
41 PF03348 Serinc: Serine incorp 34.3 3.2E+02 0.0069 28.3 10.1 41 225-266 113-159 (429)
42 PRK11715 inner membrane protei 32.8 5.8E+02 0.013 26.6 11.6 93 146-247 337-435 (436)
43 TIGR00834 ae anion exchange pr 32.8 4.6E+02 0.01 30.0 11.6 66 144-209 375-441 (900)
44 COG1296 AzlC Predicted branche 32.5 4.2E+02 0.0092 25.2 9.8 79 175-263 147-228 (238)
45 PRK02983 lysS lysyl-tRNA synth 32.5 8.8E+02 0.019 28.5 17.0 40 150-189 58-98 (1094)
46 PRK12437 prolipoprotein diacyl 31.7 4.7E+02 0.01 25.1 11.7 59 195-265 53-111 (269)
47 KOG2592 Tumor differentially e 29.2 6.5E+02 0.014 25.9 11.2 74 246-328 142-215 (426)
48 PF07895 DUF1673: Protein of u 29.1 1.8E+02 0.004 26.8 6.7 13 251-263 83-95 (205)
49 PF10066 DUF2304: Uncharacteri 28.3 2.3E+02 0.0049 23.5 6.5 26 232-257 40-66 (115)
50 PF13105 DUF3959: Protein of u 27.8 4.6E+02 0.01 24.1 8.6 22 247-268 134-155 (239)
51 PF06946 Phage_holin_5: Phage 27.1 2.5E+02 0.0055 22.8 6.1 55 209-263 20-78 (93)
52 cd03381 PAP2_glucose_6_phospha 26.5 5.6E+02 0.012 24.3 10.5 17 249-265 136-152 (235)
53 TIGR02916 PEP_his_kin putative 25.7 4E+02 0.0087 28.9 9.6 21 195-215 193-213 (679)
54 PF14898 DUF4491: Domain of un 25.7 1.3E+02 0.0029 24.4 4.3 58 146-209 4-67 (94)
55 PF01790 LGT: Prolipoprotein d 25.5 5.8E+02 0.013 24.1 10.8 56 198-265 50-106 (256)
56 COG2149 Predicted membrane pro 25.4 1.1E+02 0.0024 25.9 4.0 23 294-316 95-117 (120)
57 PF04632 FUSC: Fusaric acid re 24.9 8.4E+02 0.018 26.1 11.9 20 167-186 384-403 (650)
58 PF13829 DUF4191: Domain of un 24.8 1.9E+02 0.0041 27.3 5.9 36 231-266 38-73 (224)
59 TIGR00844 c_cpa1 na(+)/h(+) an 23.5 5.6E+02 0.012 28.9 10.0 20 246-265 260-279 (810)
60 COG4393 Predicted membrane pro 23.4 7.7E+02 0.017 24.8 13.8 95 168-264 31-137 (405)
61 TIGR00898 2A0119 cation transp 23.4 7.9E+02 0.017 24.9 11.9 37 149-186 138-174 (505)
62 PF05546 She9_MDM33: She9 / Md 22.9 67 0.0014 29.9 2.4 28 53-80 146-173 (207)
63 COG3105 Uncharacterized protei 22.6 98 0.0021 26.6 3.2 22 245-266 7-28 (138)
64 TIGR02230 ATPase_gene1 F0F1-AT 22.5 2.4E+02 0.0051 23.2 5.4 42 146-187 50-92 (100)
65 PHA00736 hypothetical protein 22.1 3.6E+02 0.0077 20.4 5.8 13 247-259 61-73 (79)
66 COG4858 Uncharacterized membra 22.0 3.8E+02 0.0083 24.7 7.0 23 130-152 92-114 (226)
67 COG2056 Predicted permease [Ge 21.4 1.9E+02 0.004 29.5 5.3 22 247-268 195-216 (444)
68 TIGR00844 c_cpa1 na(+)/h(+) an 20.3 1.3E+03 0.028 26.2 12.6 15 195-209 261-275 (810)
69 PF10749 DUF2534: Protein of u 20.0 1.3E+02 0.0028 23.8 3.1 7 334-340 44-50 (85)
70 PRK09824 PTS system beta-gluco 20.0 1.2E+03 0.025 25.6 12.3 20 245-264 385-404 (627)
No 1
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-47 Score=365.71 Aligned_cols=274 Identities=55% Similarity=0.992 Sum_probs=250.0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhcCCCCC-Chh----hhHh-hhccccccCCCCCCCCCCchHHHHHhccccchhhh
Q 037392 54 SKKWVTWLIPCFVVANIAMFVITMYVNNCPKN-SVS----CVAR-FLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVV 127 (389)
Q Consensus 54 ~~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~-~~~----~~~~-~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~ 127 (389)
...+..|.+..+...|+..|+..++.++|++. .++ |... ++.+|+|++.++||..+|+..++..+++...+.++
T Consensus 35 ~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~i~~~~ 114 (316)
T KOG2289|consen 35 PRSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLLIYKPV 114 (316)
T ss_pred cchhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCceecChh
Confidence 56678889999999999999999999999874 334 8777 99999999999999999999999999999999999
Q ss_pred ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHH
Q 037392 128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLG 207 (389)
Q Consensus 128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg 207 (389)
+++|+||++|++|+|+|+.||++||+.|+++|..+|+++|.+|+.++|++||++|++++.+++++.++|||||++|||+|
T Consensus 115 ~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggvfaLlg 194 (316)
T KOG2289|consen 115 HRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGVFALLG 194 (316)
T ss_pred hhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhcccccchh
Q 037392 208 SMLSELITNWTIYTNKH--FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALS 285 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~~~~~~~~~~~~~~~~~~ 285 (389)
++++++..||+.++.+. +..+++++.+++.+|+.|.+|+++|+||++.|..+|+++..+++++|...+... ...
T Consensus 195 A~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~----~~~ 270 (316)
T KOG2289|consen 195 AHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV----LRV 270 (316)
T ss_pred HHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee----eec
Confidence 99999999999999776 777778889999999999999999999999999999999999999988654332 112
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeec
Q 037392 286 RRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVP 335 (389)
Q Consensus 286 ~~k~~~~~~~~~~~~~~~li~~~~~~~v~l~~~~~~~~~C~~C~y~~C~p 335 (389)
+.|++..|.+.|++..+.++++++++++.+|.+ ++|.||+++.|+|
T Consensus 271 ~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~ 316 (316)
T KOG2289|consen 271 FSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP 316 (316)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence 566677777888888888999999999888877 7999999999987
No 2
>PTZ00101 rhomboid-1 protease; Provisional
Probab=100.00 E-value=8.6e-36 Score=285.35 Aligned_cols=186 Identities=28% Similarity=0.518 Sum_probs=154.9
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhh
Q 037392 57 WVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLI 136 (389)
Q Consensus 57 ~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRll 136 (389)
..+.++..++++|+++|+++...+. +..++|+.+.+..+|+++++.+.+ +||||++
T Consensus 51 ~i~~l~~~Iiii~iivfil~l~~~~-----------------------~~~l~p~~~~L~~~Ga~~~~~i~~-gq~WRLi 106 (278)
T PTZ00101 51 TWKSFIMAISIIQIIVFIISVSIKP-----------------------ADFLTPSDSLLVTLGANVASRIKQ-GEIHRLI 106 (278)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc-----------------------cccCCCCHHHHHHHhCcchhhhhc-CCCHHHH
Confidence 3677999999999999998876421 224478889999999999988765 9999999
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhhh
Q 037392 137 TCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITN 216 (389)
Q Consensus 137 Ts~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~~ 216 (389)
|++|+|.|+.|+++||+.++.+|..+|+.+|++|+.++|++||++|++++..+.+...++||||++||++|++++.++.+
T Consensus 107 T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiGa~~~~lil~ 186 (278)
T PTZ00101 107 LPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLGIVTSELILL 186 (278)
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877789999999999999999888888
Q ss_pred hhhhhhHH--HHHHHHHHHHHH--HHhh-cChhHHHHHHHHHHHHHHHHHHHhhc
Q 037392 217 WTIYTNKH--FLTLVVIIAINL--AVGI-LPHVDNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 217 ~~~~~~~~--l~~l~~~~~~~~--~~g~-~p~v~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
|...+.+. +..+++++++.+ .... .|++|++||+||+++|+++|+++.++
T Consensus 187 w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~~ 241 (278)
T PTZ00101 187 WHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNSQ 241 (278)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 87655443 222222222222 2222 37899999999999999999987653
No 3
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-36 Score=294.59 Aligned_cols=197 Identities=31% Similarity=0.610 Sum_probs=164.7
Q ss_pred ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHH
Q 037392 128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLG 207 (389)
Q Consensus 128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg 207 (389)
.++|.|||+||.|+|+|++|++..|.+++.+-+.+|+..|+.|++++|++||+.||++|++|.|+.+.||.||+-||+++
T Consensus 447 ~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~~eVgPa~sQ~Gila 526 (652)
T KOG2290|consen 447 VPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYRAEVGPAGSQFGILA 526 (652)
T ss_pred ChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccccccCCcccccchHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhHH-HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhhcccccchhh
Q 037392 208 SMLSELITNWTIYTNKH-FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSR 286 (389)
Q Consensus 208 ~~~~~~~~~~~~~~~~~-l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~ 286 (389)
+.+++++.+|++...++ ...-++.+++.+..|++|++||+||+.|+++|++.+++++++..++..+. .
T Consensus 527 ~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~-----------y 595 (652)
T KOG2290|consen 527 CLFVELFQSWQILERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDL-----------Y 595 (652)
T ss_pred HHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhh-----------h
Confidence 99999999999999988 33333334444555999999999999999999999999999988886542 2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCceeeeecCCCCCcCC
Q 037392 287 RKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHCSWCHYLSCVPTSRWSCRT 343 (389)
Q Consensus 287 ~k~~~~~~~~~~~~~~~li~~~~~~~v~l~~~~~~~~~C~~C~y~~C~p~~~~~c~~ 343 (389)
+|+ .+ .+++. +++.++..+++++|++++. .|+||.|+||+|+.+-+|.+
T Consensus 596 rKr-~~----ilIs~-ivf~~Lla~Lvv~fy~~~i--~cpWce~ltClP~~~~~~e~ 644 (652)
T KOG2290|consen 596 RKR-FY----ILISQ-IVFSGLLAILVVVFYNYPI--DCPWCEHLTCLPFTDCFCEK 644 (652)
T ss_pred hhH-HH----HHHHH-HHHHHHHHHHHHheeeccc--CCchhhhccccchhhhhhhh
Confidence 333 11 12222 2334555566677776655 79999999999999865543
No 4
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.95 E-value=5.2e-27 Score=225.21 Aligned_cols=175 Identities=20% Similarity=0.229 Sum_probs=126.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhh
Q 037392 58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLIT 137 (389)
Q Consensus 58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllT 137 (389)
..++|..++++|++||+++....+ ..+..+.....+ ..+.+||||++|
T Consensus 93 ~~p~T~~li~i~i~vf~l~~~~~~-------------------------------~~~~~~l~~~~~-~~~~~q~WRl~T 140 (276)
T PRK10907 93 AGPLTLGVMIACVVVFILMQILGD-------------------------------QTVMLWLAWPFD-PSLKFELWRYFT 140 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcc-------------------------------HHHHHHHhcccc-ccccCCcHHHHh
Confidence 444999999999999999876432 111112222112 234699999999
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhhhh
Q 037392 138 CNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELITNW 217 (389)
Q Consensus 138 s~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~~~ 217 (389)
++|+|.|+.|+++||+++|.+|..+|+.+|++|++.+|+++++.|++++.++.+ ...+|+||++||++|+.........
T Consensus 141 ~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~-~~~gGaSGvVygL~g~~~~~~~~~p 219 (276)
T PRK10907 141 HALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSG-PWFGGLSGVVYALMGYVWLRGERDP 219 (276)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999888754 5689999999999997643221111
Q ss_pred h--hh-hhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392 218 T--IY-TNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLI 265 (389)
Q Consensus 218 ~--~~-~~~~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~ 265 (389)
. .. +...+..+++++++.+.-.+.++++|.||++|+++|+++|+..-+
T Consensus 220 ~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~ 270 (276)
T PRK10907 220 QSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR 270 (276)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence 1 00 111122222222222222223689999999999999999987654
No 5
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.91 E-value=9.8e-24 Score=197.98 Aligned_cols=184 Identities=30% Similarity=0.469 Sum_probs=135.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccC---Ccch
Q 037392 58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKH---QGWR 134 (389)
Q Consensus 58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~---q~wR 134 (389)
.++++..++++|+++|+...+...... ... ..+....+..+....... |+||
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~w~ 70 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAI---FLL----------------------TFLFRLFGLYPLNLLGALARDQLWR 70 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHH---HHH----------------------HHhhhHHhhcchhhhccccccchHH
Confidence 466999999999999999887643100 000 000011112222222112 8999
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCc--cccCchHHHHHHHHHHHHH
Q 037392 135 LITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSN--ISVGASGALFGLLGSMLSE 212 (389)
Q Consensus 135 llTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~--~~vGaSGavfGllg~~~~~ 212 (389)
++|++|+|+|+.|+++||+.++.+|..+|+.+|+.|++.+|+++|+.+++.+..+.+.. +++||||++||+++++...
T Consensus 71 lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~ 150 (228)
T COG0705 71 LITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLL 150 (228)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888765 7999999999999998654
Q ss_pred Hhhhhhhhh-----hHHHHHHHHHHHHHHHHhhcC---hhHHHHHHHHHHHHHHHHHHHhhc
Q 037392 213 LITNWTIYT-----NKHFLTLVVIIAINLAVGILP---HVDNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 213 ~~~~~~~~~-----~~~l~~l~~~~~~~~~~g~~p---~v~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
......... .+....+.+.+..+++.+... ++++.||++|++.|++++..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~ 212 (228)
T COG0705 151 FPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRK 212 (228)
T ss_pred ccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 332222111 222444444555555555543 799999999999999999887653
No 6
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.90 E-value=5.3e-24 Score=185.09 Aligned_cols=140 Identities=40% Similarity=0.692 Sum_probs=107.9
Q ss_pred ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCc-cccCchHHHHHHH
Q 037392 128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSN-ISVGASGALFGLL 206 (389)
Q Consensus 128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~-~~vGaSGavfGll 206 (389)
+++|+||++|+.|+|.|+.|+++|++.++.+|..+|+.+|+.++..+|+++++.++++..++.+.. +.+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 469999999999999999999999999999999999999999999999999999999999888776 8999999999999
Q ss_pred HHHHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhcc
Q 037392 207 GSMLSELITNWTIYTNKH--FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRP 267 (389)
Q Consensus 207 g~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~ 267 (389)
++.+.....+++....+. .......+.+.+..+..+++++.+|++|+++|+++++.+.++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~ 144 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP 144 (145)
T ss_dssp HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 998777766654443222 1111122334444455799999999999999999999988765
No 7
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.63 E-value=4.5e-15 Score=138.82 Aligned_cols=137 Identities=21% Similarity=0.323 Sum_probs=101.8
Q ss_pred hhccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhhhhhcc---------Cccc
Q 037392 126 VVDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFG-FIRVGLLYIISGFGGSLLSALFIQ---------SNIS 195 (389)
Q Consensus 126 v~~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G-~~r~~~lyl~sgi~g~l~s~l~~~---------~~~~ 195 (389)
...+.|.||++|++++|.+..|+++||+++|.+|..+|+.+| +.+++....+.++..+++..++.. ..-+
T Consensus 47 ~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a 126 (258)
T KOG2632|consen 47 LLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGA 126 (258)
T ss_pred HhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhccc
Confidence 445689999999999999999999999999999999999999 888888888777777776665431 1237
Q ss_pred cCchHHHHHHHHHHHHHHhhhhhhhhhH--HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHH
Q 037392 196 VGASGALFGLLGSMLSELITNWTIYTNK--HFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFV 262 (389)
Q Consensus 196 vGaSGavfGllg~~~~~~~~~~~~~~~~--~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ 262 (389)
+|.||..|++++..-+..-...+...-- +...+..++.+....-+.|+.|..+|++|+++|+.+++.
T Consensus 127 ~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 127 IGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred ccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 9999999999997533211111000000 023334444444445567999999999999999999984
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=98.74 E-value=9e-09 Score=98.39 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=115.5
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhhh
Q 037392 59 TWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLITC 138 (389)
Q Consensus 59 p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllTs 138 (389)
+-++..++++|+++|..|....- .+..+..| -..+ +.. ---|.++++
T Consensus 115 ~g~v~~ll~~n~~vf~lWrv~~~----------~~~~~~~m-------------------ls~~---~~~-t~~w~i~~s 161 (310)
T KOG2980|consen 115 NGVVFGLLIANAFVFTLWRVPQK----------QFTMIPWM-------------------LSRN---AYK-TGCWKIILS 161 (310)
T ss_pred CcchhHHHHHHHHHHHHHHhcch----------hhhhhhHH-------------------hhcc---ccc-ccceeEEee
Confidence 44778899999999999887431 00000000 0111 111 234669999
Q ss_pred hhccccHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhhhhhhhh----ccCccccCchHHHHHHHHHHHHHH
Q 037392 139 NWLHGGVFHILANMLSLLVIGI-RLEQEFGFIRVGLLYIISGFGGSLLSALF----IQSNISVGASGALFGLLGSMLSEL 213 (389)
Q Consensus 139 ~FlH~~~~HLl~Nm~~l~~~G~-~lE~~~G~~r~~~lyl~sgi~g~l~s~l~----~~~~~~vGaSGavfGllg~~~~~~ 213 (389)
.|.|.+..|+..||+.++.+.. .+.-..|...+..+|+.++..|..+...- ....+.+||||+++++++.. ..+
T Consensus 162 ~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~-~~l 240 (310)
T KOG2980|consen 162 TFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALD-CTL 240 (310)
T ss_pred hhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccceeEeeccccccccccccccchHHHHHHHHH-hhc
Confidence 9999999999999999988887 78888899999999997777776554432 12456899999999999877 445
Q ss_pred hhhhhhh-----hhHH--HHHHHHHHHHHHHHhhc--ChhHHHHHHHHHHHHHHHHHHHhhcc
Q 037392 214 ITNWTIY-----TNKH--FLTLVVIIAINLAVGIL--PHVDNFAHIGGFISGFLLGFVFLIRP 267 (389)
Q Consensus 214 ~~~~~~~-----~~~~--l~~l~~~~~~~~~~g~~--p~v~~~aHlgG~l~G~l~g~~ll~~~ 267 (389)
+++-+.+ +.+. -..+-+++..++....+ ..-|++||++|-+.|++.+.....+.
T Consensus 241 fP~~~~~i~f~~~v~~ga~~~~~~i~~~~~a~~~l~~~~~n~~Ah~~gsl~Gv~va~~~~~ri 303 (310)
T KOG2980|consen 241 FPKTTLYILFVFPVPAGAGLAFKAIAAYDFAGLILGWGFFNHAAHLSGSLFGVVVATYLWARI 303 (310)
T ss_pred CcCcceeEEEeecccccchhHHHHHHHhhhcceeeccccchhHhhhcchHHHHHHHHHHHHHH
Confidence 5543332 1111 11111222222222222 35688899999999999998886644
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.20 E-value=1.2e-06 Score=71.85 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=54.2
Q ss_pred CcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 037392 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALF 189 (389)
Q Consensus 131 q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~ 189 (389)
+.|+++|+.|++.++..+++|.+.++..|+.+|+.+|+++++..+.+.++..+++..++
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~ 65 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLL 65 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHH
Confidence 78999999999999999999999999999999999999999998888888887766543
No 10
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=97.81 E-value=0.00019 Score=66.14 Aligned_cols=68 Identities=25% Similarity=0.252 Sum_probs=51.8
Q ss_pred ccchhhhccCCcchhhhhhhccccH-HHHHHHHHHHHHHHHHHHHHh-h-h-HHHHHHHHHHHHHhhhhhhh
Q 037392 121 LDVSKVVDKHQGWRLITCNWLHGGV-FHILANMLSLLVIGIRLEQEF-G-F-IRVGLLYIISGFGGSLLSAL 188 (389)
Q Consensus 121 ~~~~~v~~~~q~wRllTs~FlH~~~-~HLl~Nm~~l~~~G~~lE~~~-G-~-~r~~~lyl~sgi~g~l~s~l 188 (389)
++++.+.++.|+||++|+.|.-++. .++++|++.++..+..+|+.. . + ..++...+.+++.-.+++.+
T Consensus 31 ~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~~~~~ 102 (197)
T PF04511_consen 31 FDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILILSLL 102 (197)
T ss_pred ECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777789999999999987655 699999999999999999983 2 2 45666656555555555543
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=97.79 E-value=0.00034 Score=65.35 Aligned_cols=101 Identities=20% Similarity=0.141 Sum_probs=75.0
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcc
Q 037392 54 SKKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGW 133 (389)
Q Consensus 54 ~~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~w 133 (389)
+....|.+|....++++++=++...- ++.| .+-.++++.+.++.|+|
T Consensus 8 ~~~~iPpVTR~~~~~~v~tt~~~~l~---------------------------lIsP------~~l~~~p~Lv~kk~QiW 54 (239)
T KOG0858|consen 8 FYLQIPPVTRYYTTACVVTTLLVRLD---------------------------LISP------FQLYLNPELVFKKFQIW 54 (239)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHhhc---------------------------ccCc------hheEecHHHHHhHhHHH
Confidence 44557889999998888877765431 1111 13345678899999999
Q ss_pred hhhhhhhcccc-HHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhhhhhh
Q 037392 134 RLITCNWLHGG-VFHILANMLSLLVIGIRLEQEFG---FIRVGLLYIISGFGGSLLSA 187 (389)
Q Consensus 134 RllTs~FlH~~-~~HLl~Nm~~l~~~G~~lE~~~G---~~r~~~lyl~sgi~g~l~s~ 187 (389)
|++|+.+.-.. -.|.++||+.++--.+.+|+-.= +..|+.+.+.+++.-.+.+.
T Consensus 55 RliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 55 RLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred HhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999998865 58999999999999999998642 36777777777776654443
No 12
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=96.96 E-value=0.0018 Score=62.39 Aligned_cols=132 Identities=23% Similarity=0.340 Sum_probs=90.7
Q ss_pred CcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhh--------hhcc----CccccCc
Q 037392 131 QGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSA--------LFIQ----SNISVGA 198 (389)
Q Consensus 131 q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~--------l~~~----~~~~vGa 198 (389)
..|+++|+.|+-.+++..+.|.+.+.+-|..+|+.+|...++..|.+.-..-+++.. ++.. ..+..|.
T Consensus 66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G~ 145 (326)
T KOG2890|consen 66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHGT 145 (326)
T ss_pred hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEeccc
Confidence 789999999999999999999999999999999999999998888655443333222 2221 2347899
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhhHH---------HHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccC
Q 037392 199 SGALFGLLGSMLSELITNWTIYTNKH---------FLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQ 268 (389)
Q Consensus 199 SGavfGllg~~~~~~~~~~~~~~~~~---------l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~ 268 (389)
.|.+.|++.++ -.+++...+...+. +..+++.+++.+. ....++.+.-+..|...++.+++.-+
T Consensus 146 ~gilaGilVa~-kQllpd~~il~~~~~r~~~~~lP~~~l~~~~il~i~-----~f~~f~~l~s~~~g~~~sWtYLRfyq 218 (326)
T KOG2890|consen 146 TGILAGILVAW-KQLLPDTIILELKSGRFLYAHLPLLVLFLSLILSII-----TFLVFASLPSITFGVLVSWTYLRFYQ 218 (326)
T ss_pred hHHHHHHHHHH-HHHcCceeEEeccchhhhhhhCCHHHHHHHHHHHHH-----HHHHhhhhHHHHHhhhhhhhhheecc
Confidence 99999999876 33444332111111 2222222222221 34667888888899999999886544
No 13
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.016 Score=54.86 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=52.2
Q ss_pred hccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 037392 127 VDKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALF 189 (389)
Q Consensus 127 ~~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~ 189 (389)
...+|+||++.+.|.-.+-..+.+-++.++.+ +.+||.+|+.||..+.+.+++.+.++...+
T Consensus 46 ~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~il 107 (323)
T KOG4463|consen 46 EKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVIL 107 (323)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHHH
Confidence 34489999999999999988888887766664 899999999999999999998887765544
No 14
>COG5291 Predicted membrane protein [Function unknown]
Probab=94.22 E-value=0.18 Score=47.59 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=56.8
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcch
Q 037392 55 KKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWR 134 (389)
Q Consensus 55 ~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wR 134 (389)
+.+.|++|..+..+..++-++...- . .||. +.-...+..+++.||||
T Consensus 16 ~~~IPPITRy~~ll~~a~til~~~~-l----------------------vsPw----------y~ly~~pL~~k~~qiwR 62 (313)
T COG5291 16 MLRIPPITRYMTLLISAVTILVYVD-L----------------------VSPW----------YSLYYSPLFLKRLQIWR 62 (313)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHh-h----------------------cCcc----------ceeeechhHHHHHHHHH
Confidence 3347779988887777777665441 1 1121 22334455677799999
Q ss_pred hhhhhhcccc-HHHHHHHHHHHHHHHHHHHHH-hhhH
Q 037392 135 LITCNWLHGG-VFHILANMLSLLVIGIRLEQE-FGFI 169 (389)
Q Consensus 135 llTs~FlH~~-~~HLl~Nm~~l~~~G~~lE~~-~G~~ 169 (389)
++|+..+-++ -...++|+..++--.+.+|+- +|+.
T Consensus 63 lfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g~f~~~ 99 (313)
T COG5291 63 LFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEGCFNTS 99 (313)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHHHHHhccccCcc
Confidence 9998776665 468999999999999999984 4443
No 15
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=78.86 E-value=71 Score=31.59 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=19.5
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHhhc
Q 037392 240 ILPHVDNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 240 ~~p~v~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
+...+-....+...+...+.+++.+..
T Consensus 119 ~~qs~~~~l~~ll~~~~~~~~L~~l~~ 145 (325)
T PF11992_consen 119 FSQSLLFALYLLLFLVLLLAALVLLHQ 145 (325)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677788888888888887777643
No 16
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=74.53 E-value=40 Score=34.16 Aligned_cols=108 Identities=19% Similarity=0.279 Sum_probs=65.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhccCcc-------ccCchHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 037392 162 LEQEFGFIRVGLLYIISGFGGSLLSALFIQSNI-------SVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAI 234 (389)
Q Consensus 162 lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~-------~vGaSGavfGllg~~~~~~~~~~~~~~~~~l~~l~~~~~~ 234 (389)
+|-.-|..---+-|++-|+.=.++..+...-+- .+=||.+..++.+.++.....+|+ +.....+.+..+-
T Consensus 315 fE~lt~~~~Hp~QY~LVGlsLv~FYLLLLaLsEHiGFt~Ayl~aSla~a~l~~~YL~avl~~~~---~g~~f~~~L~~ly 391 (443)
T COG4452 315 FEVLTGQRLHPMQYLLVGLSLVMFYLLLLALSEHIGFTVAYLIASLAGALLNGIYLQAVLRGWR---NGLLFFLALLLLY 391 (443)
T ss_pred hhhhcccccchHHHHHHHHHHHHHHHHHHHHHhhcCcCHHHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHH
Confidence 466555555566777777776666665543332 445788888999988888877776 3334444444455
Q ss_pred HHHHhhcChhHHHHHHHHHHHHHHHHHHHhhccCCchh
Q 037392 235 NLAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGWV 272 (389)
Q Consensus 235 ~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~~~~~ 272 (389)
.+.++++..-|+.--+|..+.=++++-+++..++.+|.
T Consensus 392 gvm~glL~~edyALL~Gs~llf~~LaavM~lTRklDwy 429 (443)
T COG4452 392 GVMFGLLNSEDYALLLGSLLLFVALAAVMFLTRKLDWY 429 (443)
T ss_pred HHHHHHhhhhHHHHHHhhHHHHHHHHHHHheeeecchh
Confidence 56667776656555554444333444444445666666
No 17
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=69.21 E-value=4.9 Score=37.38 Aligned_cols=76 Identities=26% Similarity=0.177 Sum_probs=53.9
Q ss_pred ccCCcchhhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHH
Q 037392 128 DKHQGWRLITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLG 207 (389)
Q Consensus 128 ~~~q~wRllTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg 207 (389)
..|++|+++.+.++|....|...+... ..+.+.+++...+..+++....... .+++.++-+.|+++
T Consensus 136 ASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~-~~va~~aHl~G~i~ 201 (228)
T COG0705 136 ASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG-PSVAWSAHLGGLIG 201 (228)
T ss_pred hhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH
Confidence 347888888888888888777776654 4455667777777777766655433 67899999999998
Q ss_pred HHHHHHhhhh
Q 037392 208 SMLSELITNW 217 (389)
Q Consensus 208 ~~~~~~~~~~ 217 (389)
..+.......
T Consensus 202 G~l~~~~~~~ 211 (228)
T COG0705 202 GLLLAALLSR 211 (228)
T ss_pred HHHHHHHHhh
Confidence 7765544433
No 18
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=68.41 E-value=85 Score=30.60 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 037392 146 FHILANMLSLLVIGIRLEQEFGFIRVGLLYI 176 (389)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl 176 (389)
..+++|.+.|+..+..+.+....+|.++--+
T Consensus 11 ~Nf~~d~~LL~~t~~~lk~~~~~~Rll~ga~ 41 (288)
T TIGR02854 11 ENFIIDYFLLYLTARTLKDKVSQWRLLLAAL 41 (288)
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5688999999999999999999999854333
No 19
>PRK11715 inner membrane protein; Provisional
Probab=63.07 E-value=97 Score=32.19 Aligned_cols=106 Identities=18% Similarity=0.274 Sum_probs=54.7
Q ss_pred HHHhhhHHHHHHHHHHHHHhhhhhhhhccCcc-------ccCchHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 037392 163 EQEFGFIRVGLLYIISGFGGSLLSALFIQSNI-------SVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAIN 235 (389)
Q Consensus 163 E~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~-------~vGaSGavfGllg~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 235 (389)
|-.-+..---+=|++-|+.=.++..+...-+- .+=||.++.++++.++..++.+|+ +.......+..+-.
T Consensus 322 E~~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k---~g~~~~~~L~~LYg 398 (436)
T PRK11715 322 ELLKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWK---RGLLFAAALAALYG 398 (436)
T ss_pred HHhcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHH
Confidence 44433333355677777777676666543222 344678888999998888877776 22222222223333
Q ss_pred HHHhhcChhHHHHHHHHHHHHHHHHHHHhhccCCch
Q 037392 236 LAVGILPHVDNFAHIGGFISGFLLGFVFLIRPQFGW 271 (389)
Q Consensus 236 ~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~~~~~~ 271 (389)
+.++++..-|+.--+|..+.=++++.++...++.+|
T Consensus 399 ~Ly~lLq~EDyALL~GSllLF~~La~vM~~TR~iDW 434 (436)
T PRK11715 399 VLYGLLQSEDYALLLGSLLLFAVLALVMFLTRRIDW 434 (436)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHheeecccc
Confidence 344444444544333333322233444443444444
No 20
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=61.80 E-value=1.4e+02 Score=34.71 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 037392 249 HIGGFISGFLLGFVFLIRPQF 269 (389)
Q Consensus 249 HlgG~l~G~l~g~~ll~~~~~ 269 (389)
.++.++.++++..++..|+.|
T Consensus 114 ~~~a~~~~~~~~~L~~~R~~F 134 (1094)
T PRK02983 114 IIGFAVHVVAIVLLVLARREF 134 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555555555444
No 21
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=61.78 E-value=1.1e+02 Score=31.65 Aligned_cols=57 Identities=21% Similarity=0.307 Sum_probs=36.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhccCc-------cccCchHHHHHHHHHHHHHHhhhhh
Q 037392 162 LEQEFGFIRVGLLYIISGFGGSLLSALFIQSN-------ISVGASGALFGLLGSMLSELITNWT 218 (389)
Q Consensus 162 lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~-------~~vGaSGavfGllg~~~~~~~~~~~ 218 (389)
+|-.-+..---+=|++-|+.=.++..++..-+ ..+=||.++.++++.+...++.+|+
T Consensus 315 fE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k 378 (430)
T PF06123_consen 315 FELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWK 378 (430)
T ss_pred HHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 35554444445667777777766666654322 2444678888999988888777766
No 22
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=60.04 E-value=74 Score=26.50 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 037392 243 HVDNFAHIGGFISGFLLGFVFLI 265 (389)
Q Consensus 243 ~v~~~aHlgG~l~G~l~g~~ll~ 265 (389)
-.|......|.+.|.++...+.+
T Consensus 106 ~~Dv~~n~~G~~lG~~l~~~~~~ 128 (133)
T PF04892_consen 106 IDDVLANTLGALLGYLLYRLIRK 128 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999998777664
No 23
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=59.86 E-value=71 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 037392 146 FHILANMLSLLVIGIRLEQEFGFIRVGLL 174 (389)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~~r~~~l 174 (389)
..+++|.+.|+..+..+.+....+|.++-
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll~~ 39 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLLLG 39 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 46789999999999999999999998543
No 24
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=59.69 E-value=82 Score=32.95 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhh
Q 037392 199 SGALFGLLGSMLSELITNWTIYT 221 (389)
Q Consensus 199 SGavfGllg~~~~~~~~~~~~~~ 221 (389)
-..+.|++|+=+..++.+|..+.
T Consensus 61 ~~vi~giIGARL~yVl~~~~~y~ 83 (460)
T PRK13108 61 WAVPFGLIGGRLYHLATDWRTYF 83 (460)
T ss_pred HHHHHHHHHHhHHHHhcCHHHHh
Confidence 35566777766666666777654
No 25
>PHA03239 envelope glycoprotein M; Provisional
Probab=58.77 E-value=1.2e+02 Score=31.47 Aligned_cols=20 Identities=15% Similarity=0.199 Sum_probs=13.6
Q ss_pred cCccccCchHHHHHHHHHHH
Q 037392 191 QSNISVGASGALFGLLGSML 210 (389)
Q Consensus 191 ~~~~~vGaSGavfGllg~~~ 210 (389)
.++..+-.+..++|.+..++
T Consensus 254 gNsF~v~~~~~v~~ai~~F~ 273 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFI 273 (429)
T ss_pred hcceeeehhHHHHHHHHHHH
Confidence 46667777777777776553
No 26
>PHA03237 envelope glycoprotein M; Provisional
Probab=57.88 E-value=99 Score=31.96 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=12.7
Q ss_pred cCccccCchHHHHHHHHHH
Q 037392 191 QSNISVGASGALFGLLGSM 209 (389)
Q Consensus 191 ~~~~~vGaSGavfGllg~~ 209 (389)
.++..+-.+..++|.+..+
T Consensus 248 gNsF~v~~~~~v~~ai~~F 266 (424)
T PHA03237 248 ANSFHLTLWQTITVAIGVF 266 (424)
T ss_pred hcceeeehhHHHHHHHHHH
Confidence 4566677777777776655
No 27
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=53.88 E-value=1.5e+02 Score=30.08 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=29.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh------hhhhhhhccCccccCchHHHHHHHHHHH
Q 037392 159 GIRLEQEFGFIRVGLLYIISGFGG------SLLSALFIQSNISVGASGALFGLLGSML 210 (389)
Q Consensus 159 G~~lE~~~G~~r~~~lyl~sgi~g------~l~s~l~~~~~~~vGaSGavfGllg~~~ 210 (389)
.+.+++..|..|-..+=+..++.| ++.-.+...++..+-.|..++|.+..++
T Consensus 193 ~p~L~~~v~~~r~V~vNl~~~~l~l~tlv~sLsl~m~~gNsF~v~~~~~v~~ai~~F~ 250 (374)
T PF01528_consen 193 HPKLHRVVGPFRAVVVNLVLSLLGLETLVFSLSLMMAIGNSFYVSVSDMVFGAINVFA 250 (374)
T ss_pred ChHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeHHHHHHHHHHHHH
Confidence 344566677777655433333332 2222222357778888888888887664
No 28
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=50.24 E-value=3.7e+02 Score=29.21 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 037392 147 HILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSAL 188 (389)
Q Consensus 147 HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l 188 (389)
..+.+.+...++| .+-..+|++.++++-.+-++.|.++..-
T Consensus 87 ~~l~~av~~~~~G-~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 87 WTLASAVSFPFVG-RLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHhhH-HHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 4555666665555 6788999999988777777777776553
No 29
>PRK10263 DNA translocase FtsK; Provisional
Probab=49.97 E-value=76 Score=37.38 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 037392 64 CFVVANIAMFVITM 77 (389)
Q Consensus 64 ~li~i~i~vfi~~~ 77 (389)
.++++.+++|+...
T Consensus 27 gIlLlllAlfL~lA 40 (1355)
T PRK10263 27 LILIVLFAVWLMAA 40 (1355)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 30
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=48.67 E-value=73 Score=22.65 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhh
Q 037392 146 FHILANMLSLLVIGIRLEQEFGF-IRVGLLYIISGFGGSLLS 186 (389)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~-~r~~~lyl~sgi~g~l~s 186 (389)
..++.+++.-..+|..+++.+|+ ..+.++.++-|+.+++.+
T Consensus 8 ~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 8 FTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 35677788888999999999998 556666667777666544
No 31
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.02 E-value=2.6e+02 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=27.0
Q ss_pred cCccccCchHHHHHHHHHHHHHHhhhhhhhhhHH
Q 037392 191 QSNISVGASGALFGLLGSMLSELITNWTIYTNKH 224 (389)
Q Consensus 191 ~~~~~vGaSGavfGllg~~~~~~~~~~~~~~~~~ 224 (389)
.+...-=.||.++|+++.++..++.-|+.++++.
T Consensus 158 rn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt 191 (452)
T KOG3817|consen 158 RNSVFYYSSGIVIGILASLLVVIFLVARFFPKKT 191 (452)
T ss_pred cCceEEEecccHHHHHHHHHHHHHHHHHhccccc
Confidence 4555556799999999999888888888877764
No 32
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.33 E-value=5.7e+02 Score=30.57 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCCchhhh
Q 037392 243 HVDNFAHIGGFISGFLLGFVFLIRPQFGWVEQ 274 (389)
Q Consensus 243 ~v~~~aHlgG~l~G~l~g~~ll~~~~~~~~~~ 274 (389)
.++.+.-++..+.+++--+....++...|.+.
T Consensus 183 wlsIleriG~~v~~~~t~l~~~~r~~~~~~~~ 214 (1355)
T PRK10263 183 WVTIAEKLGGWILNILTFASNRTRRDDTWVDE 214 (1355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccccc
Confidence 33444444555555443322223344445543
No 33
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=46.47 E-value=2.7e+02 Score=28.92 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=11.1
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 037392 58 VTWLIPCFVVANIAMFVITMY 78 (389)
Q Consensus 58 ~p~vt~~li~i~i~vfi~~~~ 78 (389)
..|-...+.+.-+++|+.+..
T Consensus 298 ~KYgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344554555555555665554
No 34
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=43.32 E-value=2.8e+02 Score=28.61 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 037392 145 VFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSAL 188 (389)
Q Consensus 145 ~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l 188 (389)
-.+++.-+++=+.+|..-|+ +|++..+.+-++..+.+++++.+
T Consensus 125 s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~i~~~~~a~ 167 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFIIFGILTAF 167 (521)
T ss_pred HHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666777777777 99999888777777666655543
No 35
>COG4769 Predicted membrane protein [Function unknown]
Probab=40.74 E-value=1.8e+02 Score=26.17 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=18.6
Q ss_pred hcChhHHHHHHHHHHHHHHHHHHHh
Q 037392 240 ILPHVDNFAHIGGFISGFLLGFVFL 264 (389)
Q Consensus 240 ~~p~v~~~aHlgG~l~G~l~g~~ll 264 (389)
.+|-....+-+.|.+.|++.+..+.
T Consensus 138 ~lPll~flGivsG~~vg~~~~~~i~ 162 (181)
T COG4769 138 YLPLLIFLGIVSGTAVGILANTLII 162 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477777888888888888777654
No 36
>PHA03242 envelope glycoprotein M; Provisional
Probab=38.49 E-value=4.7e+02 Score=27.13 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh------hhhhhhhccCccccCchHHHHHHHHHHH
Q 037392 160 IRLEQEFGFIRVGLLYIISGFGG------SLLSALFIQSNISVGASGALFGLLGSML 210 (389)
Q Consensus 160 ~~lE~~~G~~r~~~lyl~sgi~g------~l~s~l~~~~~~~vGaSGavfGllg~~~ 210 (389)
..+++..|+.|-..+=+..++.| ++.-.+...++..+-.+..++|.+..++
T Consensus 208 ~~l~rlvg~~RaV~~Nl~~~~lgl~~lv~sL~l~m~~gNsF~v~~~~~v~~ai~~F~ 264 (428)
T PHA03242 208 PTHHRVVGPVRAVMTNALLGGVALCTATAALMLGTIAANNFHLSLPGTLVCLTAVFA 264 (428)
T ss_pred cchHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeehhHHHHHHHHHHH
Confidence 34566667766554433333322 2222222346677777788877777653
No 37
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=38.14 E-value=3.6e+02 Score=25.68 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 037392 286 RRKFMTYQCILWIVSLVLV 304 (389)
Q Consensus 286 ~~k~~~~~~~~~~~~~~~l 304 (389)
.+.++..++.+++++++++
T Consensus 124 ~rs~~~v~W~Lqligl~lI 142 (249)
T PF10225_consen 124 PRSRNFVKWALQLIGLVLI 142 (249)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3456677788888777653
No 38
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=37.99 E-value=4e+02 Score=26.09 Aligned_cols=25 Identities=36% Similarity=0.479 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCc
Q 037392 246 NFAHIGGFISGFLLGFVFLIRPQFG 270 (389)
Q Consensus 246 ~~aHlgG~l~G~l~g~~ll~~~~~~ 270 (389)
..|-+||++.|+-+|+++..+-..|
T Consensus 115 l~aifgG~l~G~G~glv~r~ggStG 139 (289)
T COG1284 115 LAALFGGLLLGIGLGLVFRHGGSTG 139 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 4788999999999999887665554
No 39
>PRK09776 putative diguanylate cyclase; Provisional
Probab=36.89 E-value=5.4e+02 Score=29.28 Aligned_cols=14 Identities=29% Similarity=0.190 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhh
Q 037392 172 GLLYIISGFGGSLL 185 (389)
Q Consensus 172 ~~lyl~sgi~g~l~ 185 (389)
+++|++.|.+|..+
T Consensus 4 ~~~~~~~~~~~~~~ 17 (1092)
T PRK09776 4 GLVSFIFTLFSLEL 17 (1092)
T ss_pred hHHHHHHHHHHHHH
Confidence 45666666665443
No 40
>PF12669 P12: Virus attachment protein p12 family
Probab=35.31 E-value=79 Score=23.16 Aligned_cols=32 Identities=22% Similarity=0.432 Sum_probs=14.9
Q ss_pred HHHhcCCCCCCCCCCceee-eecCCCCCcCCCCc
Q 037392 314 MLLRGVDANDHCSWCHYLS-CVPTSRWSCRTEPA 346 (389)
Q Consensus 314 ~l~~~~~~~~~C~~C~y~~-C~p~~~~~c~~~~~ 346 (389)
-+++......-|..|--=+ | +.+...|.+.+.
T Consensus 19 ~~~k~~K~G~~c~gCs~~sgC-~~~~~~C~~~~~ 51 (58)
T PF12669_consen 19 KFIKDKKKGGCCCGCSGCSGC-CGSSSSCHSKKK 51 (58)
T ss_pred HHHHHhhcCCCCCCCCCCCCc-CCCCCCCCCCCc
Confidence 3444433323455554434 5 444556655433
No 41
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=34.28 E-value=3.2e+02 Score=28.31 Aligned_cols=41 Identities=27% Similarity=0.610 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHhhcCh-----h-HHHHHHHHHHHHHHHHHHHhhc
Q 037392 225 FLTLVVIIAINLAVGILPH-----V-DNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 225 l~~l~~~~~~~~~~g~~p~-----v-~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
...+++++++.+..-++|+ + .+.+.+||+++ +++.++++.+
T Consensus 113 ~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~F-iliQlIlLvD 159 (429)
T PF03348_consen 113 FLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIF-ILIQLILLVD 159 (429)
T ss_pred HHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3344444444433334575 1 34666777665 5666666654
No 42
>PRK11715 inner membrane protein; Provisional
Probab=32.84 E-value=5.8e+02 Score=26.56 Aligned_cols=93 Identities=20% Similarity=0.286 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh-----hhhhccCccccCchHHHHHHHHHHHHHHhhhhhhh
Q 037392 146 FHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLL-----SALFIQSNISVGASGALFGLLGSMLSELITNWTIY 220 (389)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~-----s~l~~~~~~~vGaSGavfGllg~~~~~~~~~~~~~ 220 (389)
.-+..-++.++.+ .+-+.+| |..-|++++....++ +.++......++..+++.++.|.+.+.+ . - .
T Consensus 337 VGlAl~lFYLLLL--SlSEHig---F~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~lL-q-~--E 407 (436)
T PRK11715 337 VGLALVLFYLLLL--SLSEHIG---FTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGLL-Q-S--E 407 (436)
T ss_pred HHHHHHHHHHHHH--HHHhhhc---hHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH-H-H--h
Confidence 3444444444333 3344444 344555555443332 2222233345555555555555443221 1 1 1
Q ss_pred hhHH-HHHHHHHHHHHHHHhhcChhHHH
Q 037392 221 TNKH-FLTLVVIIAINLAVGILPHVDNF 247 (389)
Q Consensus 221 ~~~~-l~~l~~~~~~~~~~g~~p~v~~~ 247 (389)
..-. ...+.+++++.++.-+..++||.
T Consensus 408 DyALL~GSllLF~~La~vM~~TR~iDWy 435 (436)
T PRK11715 408 DYALLLGSLLLFAVLALVMFLTRRIDWY 435 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeccccc
Confidence 1222 45555566666665566677764
No 43
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=32.76 E-value=4.6e+02 Score=29.95 Aligned_cols=66 Identities=24% Similarity=0.285 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHH
Q 037392 144 GVFHILANMLSLLVIGIRLEQEFGF-IRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSM 209 (389)
Q Consensus 144 ~~~HLl~Nm~~l~~~G~~lE~~~G~-~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~ 209 (389)
-+.=++.|+.--+.||..+++.-+. .-..=..+.++++|-+.+.+-.+.-..+|.+|-+.-...++
T Consensus 375 ~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~l 441 (900)
T TIGR00834 375 VIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAF 441 (900)
T ss_pred HHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHH
Confidence 3455677888888888888776443 22333444555555554443334455889999877666554
No 44
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=32.53 E-value=4.2e+02 Score=25.16 Aligned_cols=79 Identities=18% Similarity=0.343 Sum_probs=38.4
Q ss_pred HHHHHHHhhhhh-hhhccCccccCchHHHHHHHHHHHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHhhcChhHHHHHHH
Q 037392 175 YIISGFGGSLLS-ALFIQSNISVGASGALFGLLGSMLSELITNWTIYTNKH--FLTLVVIIAINLAVGILPHVDNFAHIG 251 (389)
Q Consensus 175 yl~sgi~g~l~s-~l~~~~~~~vGaSGavfGllg~~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~~g~~p~v~~~aHlg 251 (389)
+.++.+.|.+++ .+.+++ . -|--|.+-+.+++.++..|+..+... ...+....+... +.+ ..+.-+.
T Consensus 147 Wv~~t~iGa~~G~~l~~~~--~---~GldFal~a~Fi~L~~~~~k~~~~~~~~~~~~~~a~~~~~---l~~--~~~~v~~ 216 (238)
T COG1296 147 WVVGTLIGALLGSLLPDPE--T---IGLDFALPALFIVLVIPQFKRRKTLLSVLASLVLALVALV---LFG--GPWAVLA 216 (238)
T ss_pred HHHHHHHHHHhhhccCCHh--h---hhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH---HHh--HHHHHHH
Confidence 345555565554 322222 2 34556666666666666666543332 222222111111 112 4456677
Q ss_pred HHHHHHHHHHHH
Q 037392 252 GFISGFLLGFVF 263 (389)
Q Consensus 252 G~l~G~l~g~~l 263 (389)
|.++|++...+.
T Consensus 217 ~~la~l~~~~l~ 228 (238)
T COG1296 217 GILAGLLAALLL 228 (238)
T ss_pred HHHHHHHHHHHh
Confidence 777777765554
No 45
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=32.52 E-value=8.8e+02 Score=28.46 Aligned_cols=40 Identities=15% Similarity=0.053 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 037392 150 ANMLSLLVIGIRL-EQEFGFIRVGLLYIISGFGGSLLSALF 189 (389)
Q Consensus 150 ~Nm~~l~~~G~~l-E~~~G~~r~~~lyl~sgi~g~l~s~l~ 189 (389)
+..+.|++++..+ -+.-+.|+..+++++.++.-+++..+.
T Consensus 58 ~~g~~Ll~lA~gL~rr~r~Aw~~~~~~~~~~~~~~l~~~l~ 98 (1094)
T PRK02983 58 AWAFVLALLAAALRRRKRAAWWVLLAYLVLAALLNVALLAL 98 (1094)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3334444555544 445556777777777777776665543
No 46
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=31.70 E-value=4.7e+02 Score=25.08 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=32.6
Q ss_pred ccCchHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392 195 SVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLI 265 (389)
Q Consensus 195 ~vGaSGavfGllg~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~ 265 (389)
.+.....+.|++|+=+..++.+|+.+....... +.+.. .-.+-.||+++|++.++.+.+
T Consensus 53 ~l~~~~~l~gilGARl~~Vl~~~~~y~~~p~~i------~~i~~------GGls~~GGligg~l~~~~~~r 111 (269)
T PRK12437 53 DLVLIAVPIAILGARIYYVLFEWDYYAQNPSQI------FNIWQ------GGLAIHGGLIGAVLTGIIFAK 111 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHhCHHHH------HHHhc------CCchHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777653321111 11111 123344888888877776654
No 47
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=29.16 E-value=6.5e+02 Score=25.91 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhhhhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 037392 246 NFAHIGGFISGFLLGFVFLIRPQFGWVEQRYALSGYSALSRRKFMTYQCILWIVSLVLVIVGLTLGLVMLLRGVDANDHC 325 (389)
Q Consensus 246 ~~aHlgG~l~G~l~g~~ll~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~li~~~~~~~v~l~~~~~~~~~C 325 (389)
+.+-+||+++ ++.+++++..-...|-+.=-. +-+.-+.+...+..+.++..++.++... ++|-.+.+.+.|
T Consensus 142 ~v~~~Ga~~F-ILvqLvLLvDFaH~w~e~wv~-------~~Edsr~wy~~Ll~~T~~~Y~~s~~~~~-l~fv~ft~~~~C 212 (426)
T KOG2592|consen 142 YVSVFGAALF-ILVQLVLLVDFAHSWNESWVE-------KVEDSRFWYAALLGVTLLMYLLSLVATV-LLFVYFTPGDGC 212 (426)
T ss_pred HHHHHhHHHH-HHHHHHHHHHHHhhHHHHHHH-------HhhchhHHHHHHHHHHHHHHHHHHHHHH-HhheEecCCCCC
Confidence 3555566555 677777776554444421000 0011123334455556655565554433 334334345677
Q ss_pred CCC
Q 037392 326 SWC 328 (389)
Q Consensus 326 ~~C 328 (389)
.-=
T Consensus 213 ~~n 215 (426)
T KOG2592|consen 213 GEN 215 (426)
T ss_pred Ccc
Confidence 643
No 48
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=29.11 E-value=1.8e+02 Score=26.82 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHH
Q 037392 251 GGFISGFLLGFVF 263 (389)
Q Consensus 251 gG~l~G~l~g~~l 263 (389)
.++++|+++++.+
T Consensus 83 ~~ll~g~~~~L~~ 95 (205)
T PF07895_consen 83 LFLLAGLILSLYL 95 (205)
T ss_pred HHHHHHHHHHHHH
Confidence 5555666555443
No 49
>PF10066 DUF2304: Uncharacterized conserved protein (DUF2304); InterPro: IPR019277 This entry represents hypothetical archaeal and bacterial proteins that have no known function.
Probab=28.33 E-value=2.3e+02 Score=23.50 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCh-hHHHHHHHHHHHHH
Q 037392 232 IAINLAVGILPH-VDNFAHIGGFISGF 257 (389)
Q Consensus 232 ~~~~~~~g~~p~-v~~~aHlgG~l~G~ 257 (389)
.+..++.++.|+ .+..||+-|+-.|.
T Consensus 40 ~i~~l~~~ifP~~~~~vA~~lGi~~~~ 66 (115)
T PF10066_consen 40 SIILLILSIFPNILDWVAKLLGIGRPP 66 (115)
T ss_pred HHHHHHHHhhhhHHHHHHHHHCCCchh
Confidence 334445566675 57889998865554
No 50
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=27.84 E-value=4.6e+02 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 037392 247 FAHIGGFISGFLLGFVFLIRPQ 268 (389)
Q Consensus 247 ~aHlgG~l~G~l~g~~ll~~~~ 268 (389)
.--+||++.|-+++..+-++.+
T Consensus 134 llLvgGli~GGLlA~~~hRke~ 155 (239)
T PF13105_consen 134 LLLVGGLILGGLLAMLIHRKEK 155 (239)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4567999999999988765443
No 51
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=27.09 E-value=2.5e+02 Score=22.75 Aligned_cols=55 Identities=20% Similarity=0.189 Sum_probs=26.3
Q ss_pred HHHHHhhhhhhhhhHH--HHHHHHHHHHHHHHhhcCh-hHHH-HHHHHHHHHHHHHHHH
Q 037392 209 MLSELITNWTIYTNKH--FLTLVVIIAINLAVGILPH-VDNF-AHIGGFISGFLLGFVF 263 (389)
Q Consensus 209 ~~~~~~~~~~~~~~~~--l~~l~~~~~~~~~~g~~p~-v~~~-aHlgG~l~G~l~g~~l 263 (389)
.++..+..-...+.++ +..+++-+++.++...+++ .+.. .-..|.++|+...-++
T Consensus 20 ~lVq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~ 78 (93)
T PF06946_consen 20 ALVQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLF 78 (93)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHH
Confidence 3445555544445565 3333334444444444443 2111 1245777777665554
No 52
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=26.55 E-value=5.6e+02 Score=24.25 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037392 249 HIGGFISGFLLGFVFLI 265 (389)
Q Consensus 249 HlgG~l~G~l~g~~ll~ 265 (389)
.++|.+.|++.+..+.+
T Consensus 136 VlaG~~lGi~~~~~~~~ 152 (235)
T cd03381 136 VIAGVISGIAVAETFSH 152 (235)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 48899999988877654
No 53
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=25.69 E-value=4e+02 Score=28.91 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=12.9
Q ss_pred ccCchHHHHHHHHHHHHHHhh
Q 037392 195 SVGASGALFGLLGSMLSELIT 215 (389)
Q Consensus 195 ~vGaSGavfGllg~~~~~~~~ 215 (389)
...+-|.+..++..+++....
T Consensus 193 ~~~~rg~~~~~~~~~~~~~~~ 213 (679)
T TIGR02916 193 VWPARGLVAALVVPLIAVSAA 213 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345567777777766554444
No 54
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=25.68 E-value=1.3e+02 Score=24.36 Aligned_cols=58 Identities=26% Similarity=0.430 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHH
Q 037392 146 FHILANMLSLLVIGI------RLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSM 209 (389)
Q Consensus 146 ~HLl~Nm~~l~~~G~------~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~ 209 (389)
.-++.-+..++.+|. -.|..+|+ |...+|++.|+...++|..... . . -.++.|++|+.
T Consensus 4 ~Giiigi~tFliIG~fHpiVIk~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~-~---~-~S~llgv~g~s 67 (94)
T PF14898_consen 4 TGIIIGIATFLIIGLFHPIVIKGEYYFGT-RIWPIFLLAGIACIIASLFVSN-V---I-WSALLGVLGFS 67 (94)
T ss_pred hhHHHHHHHHHHHHccCeEEEEEEEecCC-CcHHHHHHHHHHHHHHHHHHcc-h---H-HHHHHHHHHHH
Confidence 344555566666664 24888998 6789999999999888865532 1 1 23456666654
No 55
>PF01790 LGT: Prolipoprotein diacylglyceryl transferase; InterPro: IPR001640 Prolipoprotein diacylglyceryl transferase [] is the bacterial enzyme catalysing the first step in lipoprotein biogenesis. It transfers the n-acyl diglyceride group onto what will become the N-terminal cysteine of membrane lipoproteins. This enzyme is an integral membrane protein.; GO: 0016757 transferase activity, transferring glycosyl groups, 0009249 protein lipoylation, 0042158 lipoprotein biosynthetic process, 0016020 membrane
Probab=25.52 E-value=5.8e+02 Score=24.11 Aligned_cols=56 Identities=27% Similarity=0.481 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392 198 ASGALFGLLGSMLSELI-TNWTIYTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLI 265 (389)
Q Consensus 198 aSGavfGllg~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~ 265 (389)
....+.|++|+=+...+ .+|+.+.......+ .+. -.-.+--||+++|++.+.++.+
T Consensus 50 ~~~~l~gilGARl~~vl~~~~~~y~~~p~~i~------~i~------~GGl~~~GGligg~l~~~~~~r 106 (256)
T PF01790_consen 50 LWALLGGILGARLFYVLFYNWDYYSADPWQIL------AIW------DGGLSFYGGLIGGILAGIWYAR 106 (256)
T ss_pred HHHHHHHhHHHHHHHHHHhChHhhhcCHHHHH------HHH------hCchHHHHHHHHHHHHHHHHHH
Confidence 34566677776666666 56654422211111 111 1234567888888888877764
No 56
>COG2149 Predicted membrane protein [Function unknown]
Probab=25.41 E-value=1.1e+02 Score=25.86 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037392 294 CILWIVSLVLVIVGLTLGLVMLL 316 (389)
Q Consensus 294 ~~~~~~~~~~li~~~~~~~v~l~ 316 (389)
.++.++++++++++.++.+.+++
T Consensus 95 ~i~~~~av~lvVv~~~~~llv~~ 117 (120)
T COG2149 95 NIWLYLAVGLVVVGVIVLLLVLY 117 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777777766655544443
No 57
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=24.91 E-value=8.4e+02 Score=26.05 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHhhhhh
Q 037392 167 GFIRVGLLYIISGFGGSLLS 186 (389)
Q Consensus 167 G~~r~~~lyl~sgi~g~l~s 186 (389)
.+.+....++.+.+.|.+++
T Consensus 384 ~P~~~~~~~~~G~l~~~~~a 403 (650)
T PF04632_consen 384 NPAPALRLFLIGALLGAVLA 403 (650)
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 58
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=24.79 E-value=1.9e+02 Score=27.30 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhhc
Q 037392 231 IIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 231 ~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
.+++.+++|++-+.-++--+.|++.|++.+++++-+
T Consensus 38 ~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~r 73 (224)
T PF13829_consen 38 PIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSR 73 (224)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555544444677888999999999988854
No 59
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=23.46 E-value=5.6e+02 Score=28.89 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 037392 246 NFAHIGGFISGFLLGFVFLI 265 (389)
Q Consensus 246 ~~aHlgG~l~G~l~g~~ll~ 265 (389)
..-|..||++-++.|+++-.
T Consensus 260 ~lLggSGfLAVFVAGl~~gn 279 (810)
T TIGR00844 260 SMLGVDDLLVSFFAGTAFAW 279 (810)
T ss_pred HHhccccHHHHHHHHHHHhc
Confidence 36677888888888888754
No 60
>COG4393 Predicted membrane protein [Function unknown]
Probab=23.45 E-value=7.7e+02 Score=24.84 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhhcc-CccccCchHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhcC----
Q 037392 168 FIRVGLLYIISGFGGSLLSALFIQ-SNISVGASGALFGLLGSMLSELITNWTIYTNKHFLTLVVIIAINLAVGILP---- 242 (389)
Q Consensus 168 ~~r~~~lyl~sgi~g~l~s~l~~~-~~~~vGaSGavfGllg~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~g~~p---- 242 (389)
..+...+-++.|+.|..++..+.. .....-.++...|.+-..+. .+-|..........+++.....+-+|..|
T Consensus 31 ~~~vvwl~~L~~~~g~~~~~y~pKsq~~~l~l~~v~i~sLLlf~~--sqfw~~i~l~~Fw~~lLsF~aaL~wg~~~n~f~ 108 (405)
T COG4393 31 SFFVVWLGFLFGYFGFFIAAYFPKSQNLILNLDFVFIGSLLLFFI--SQFWKKIELLNFWLLLLSFCAALHWGFMPNLFA 108 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccceeehhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCccccc
Confidence 344455556777777777766543 34466777877776655433 33444333222222233333344455554
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHh
Q 037392 243 -------HVDNFAHIGGFISGFLLGFVFL 264 (389)
Q Consensus 243 -------~v~~~aHlgG~l~G~l~g~~ll 264 (389)
+.|...|+|+++.|++..+...
T Consensus 109 if~tdvinTd~ll~lg~i~lall~~ilia 137 (405)
T COG4393 109 IFGTDVINTDSLLRLGAILLALLTIILIA 137 (405)
T ss_pred cccccccccHHHHHhHHHHHHHHHHHHHH
Confidence 5678999999999988766543
No 61
>TIGR00898 2A0119 cation transport protein.
Probab=23.40 E-value=7.9e+02 Score=24.93 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 037392 149 LANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLS 186 (389)
Q Consensus 149 l~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s 186 (389)
+..++.....|...+ ++|+++.+.+-.+....+.++.
T Consensus 138 ~g~~~g~~~~g~l~D-r~Grr~~~~~~~~~~~i~~~~~ 174 (505)
T TIGR00898 138 VGVLLGSFVFGYLSD-RFGRKKVLLLSTLVTAVSGVLT 174 (505)
T ss_pred HHHHHHHHhHHHhhh-hccchHHHHHHHHHHHHHHHHH
Confidence 344455556665555 4899887766555444444443
No 62
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.92 E-value=67 Score=29.88 Aligned_cols=28 Identities=14% Similarity=0.291 Sum_probs=23.3
Q ss_pred ccccccchHHHHHHHHHHHHHHHHHHhc
Q 037392 53 HSKKWVTWLIPCFVVANIAMFVITMYVN 80 (389)
Q Consensus 53 ~~~~~~p~vt~~li~i~i~vfi~~~~~~ 80 (389)
..++.-.|.|.+++++|+++|++..++-
T Consensus 146 KIRr~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 146 KIRRASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456678999999999999999987753
No 63
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.56 E-value=98 Score=26.64 Aligned_cols=22 Identities=14% Similarity=0.199 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 037392 245 DNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 245 ~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
.|.+-+-|+++|+++|+++.+-
T Consensus 7 ~W~~a~igLvvGi~IG~li~Rl 28 (138)
T COG3105 7 TWEYALIGLVVGIIIGALIARL 28 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677889999999988753
No 64
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=22.53 E-value=2.4e+02 Score=23.18 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhhhhhh
Q 037392 146 FHILANMLSLLVIGIRLEQEFGF-IRVGLLYIISGFGGSLLSA 187 (389)
Q Consensus 146 ~HLl~Nm~~l~~~G~~lE~~~G~-~r~~~lyl~sgi~g~l~s~ 187 (389)
++++.-++.-.++|..+.+.+|+ ..+.+++++.|++.++..+
T Consensus 50 ~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 45666667778899999999985 3455666777776665443
No 65
>PHA00736 hypothetical protein
Probab=22.05 E-value=3.6e+02 Score=20.42 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 037392 247 FAHIGGFISGFLL 259 (389)
Q Consensus 247 ~aHlgG~l~G~l~ 259 (389)
.+-+.|.++|+++
T Consensus 61 i~vifgliag~vl 73 (79)
T PHA00736 61 ITVIFGLIAGLVL 73 (79)
T ss_pred HHHHHHHHHHHhc
Confidence 4556666666654
No 66
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.98 E-value=3.8e+02 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=12.8
Q ss_pred CCcchhhhhhhccccHHHHHHHH
Q 037392 130 HQGWRLITCNWLHGGVFHILANM 152 (389)
Q Consensus 130 ~q~wRllTs~FlH~~~~HLl~Nm 152 (389)
+-||-++-+..+-.|+.-|+.-+
T Consensus 92 dp~lm~lDssLl~lg~~aLlsgi 114 (226)
T COG4858 92 DPWLMWLDSSLLFLGAMALLSGI 114 (226)
T ss_pred CceEEEecccHHHHHHHHHHHHH
Confidence 45666666666555555554433
No 67
>COG2056 Predicted permease [General function prediction only]
Probab=21.38 E-value=1.9e+02 Score=29.53 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccC
Q 037392 247 FAHIGGFISGFLLGFVFLIRPQ 268 (389)
Q Consensus 247 ~aHlgG~l~G~l~g~~ll~~~~ 268 (389)
+----|+++|++++.++..|+.
T Consensus 195 ~ip~lgMi~GLl~ai~~~YrKp 216 (444)
T COG2056 195 WIPGLGMIVGLLLAIFVSYRKP 216 (444)
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 3345688999999998844433
No 68
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=20.30 E-value=1.3e+03 Score=26.18 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=9.0
Q ss_pred ccCchHHHHHHHHHH
Q 037392 195 SVGASGALFGLLGSM 209 (389)
Q Consensus 195 ~vGaSGavfGllg~~ 209 (389)
.+|.||-+...++..
T Consensus 261 lLggSGfLAVFVAGl 275 (810)
T TIGR00844 261 MLGVDDLLVSFFAGT 275 (810)
T ss_pred HhccccHHHHHHHHH
Confidence 567777655555444
No 69
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=20.04 E-value=1.3e+02 Score=23.77 Aligned_cols=7 Identities=43% Similarity=1.274 Sum_probs=5.1
Q ss_pred ecCCCCC
Q 037392 334 VPTSRWS 340 (389)
Q Consensus 334 ~p~~~~~ 340 (389)
+|++.|.
T Consensus 44 iP~s~Wt 50 (85)
T PF10749_consen 44 IPFSEWT 50 (85)
T ss_pred CChhhhh
Confidence 7888873
No 70
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=20.03 E-value=1.2e+03 Score=25.60 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 037392 245 DNFAHIGGFISGFLLGFVFL 264 (389)
Q Consensus 245 ~~~aHlgG~l~G~l~g~~ll 264 (389)
=..+-+||++.|.+.|+.=.
T Consensus 385 fi~~~iggaiGG~~~g~~~v 404 (627)
T PRK09824 385 FIFGCISGALGAAIIGYAQT 404 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34788999999998886643
Done!