Query 037392
Match_columns 389
No_of_seqs 364 out of 2005
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 20:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 4.9E-29 1.7E-33 225.0 20.4 175 58-265 3-180 (181)
2 2nr9_A Protein GLPG homolog; i 100.0 3.5E-30 1.2E-34 235.4 12.5 179 55-266 5-186 (196)
3 4aps_A DI-OR tripeptide H+ sym 26.7 4.1E+02 0.014 25.1 13.1 40 147-186 63-102 (491)
4 1p1p_A AA-conotoxin PIVA; neur 24.9 54 0.0019 18.8 2.3 21 319-350 5-25 (26)
5 3mp7_B Preprotein translocase 15.2 2.1E+02 0.0073 20.2 4.3 28 288-315 26-53 (61)
6 2ww9_B Protein transport prote 14.4 2.3E+02 0.0079 21.2 4.5 29 287-315 42-70 (80)
7 2xzl_A ATP-dependent helicase 13.4 29 0.001 37.2 -1.1 68 321-388 10-104 (802)
8 1rh5_B Preprotein translocase 13.3 2.6E+02 0.009 20.5 4.5 28 288-315 30-57 (74)
9 3kp9_A Vkorc1/thioredoxin doma 10.7 4.6E+02 0.016 24.2 6.4 9 321-329 126-134 (291)
10 2wwb_B SEC61gamma, protein tra 10.6 2E+02 0.0069 20.8 3.0 32 285-316 26-57 (68)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.96 E-value=4.9e-29 Score=224.98 Aligned_cols=175 Identities=19% Similarity=0.219 Sum_probs=129.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcchhhh
Q 037392 58 VTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWRLIT 137 (389)
Q Consensus 58 ~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wRllT 137 (389)
.|++|..++++|+++|+++..... +.+.++.+++++.+ +++||||++|
T Consensus 3 ~~pvt~~li~~~v~vf~~~~~~~~-------------------------------~~~~~~~~~~p~~~-~~~~~wrl~T 50 (181)
T 2xov_A 3 AGPVTWVMMIACVVVFIAMQILGD-------------------------------QEVMLWLAWPFDPT-LKFEFWRYFT 50 (181)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCH-------------------------------HHHHHHHSSCCSGG-GTTCTTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCc-------------------------------HHHHHhhcCChhhc-cCCCCHHHHH
Confidence 355999999999999999876421 11223334444433 4599999999
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHhh--
Q 037392 138 CNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELIT-- 215 (389)
Q Consensus 138 s~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~~-- 215 (389)
++|+|.|+.|+++||+.++.+|..+|+.+|+.|++.+|++++++|++++.++.++. ++||||++||++++.......
T Consensus 51 ~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~~~p 129 (181)
T 2xov_A 51 HALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPW-FGGLSGVVYALMGYVWLRGERDP 129 (181)
T ss_dssp GGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCC-ceeHHHHHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999887654 999999999999987542211
Q ss_pred hhhh-hhhHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHhh
Q 037392 216 NWTI-YTNKHFLTLVVIIAINLAVGILPHVDNFAHIGGFISGFLLGFVFLI 265 (389)
Q Consensus 216 ~~~~-~~~~~l~~l~~~~~~~~~~g~~p~v~~~aHlgG~l~G~l~g~~ll~ 265 (389)
+.+. .+.+......+.++..+...+.+++|+.||++|+++|+++++.+.+
T Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~ 180 (181)
T 2xov_A 130 QSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL 180 (181)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence 1111 0112111222222222221123689999999999999999987653
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.96 E-value=3.5e-30 Score=235.39 Aligned_cols=179 Identities=19% Similarity=0.288 Sum_probs=132.7
Q ss_pred ccccchHHHHHHHHHHHHHHHHHHhcCCCCCChhhhHhhhccccccCCCCCCCCCCchHHHHHhccccchhhhccCCcch
Q 037392 55 KKWVTWLIPCFVVANIAMFVITMYVNNCPKNSVSCVARFLGRFSFQPFKENPLLGPSSVTLQKMGALDVSKVVDKHQGWR 134 (389)
Q Consensus 55 ~~~~p~vt~~li~i~i~vfi~~~~~~~~~~~~~~~~~~~~~~~~f~p~~~npllgps~~~L~~~Ga~~~~~v~~~~q~wR 134 (389)
+.+.|++|..++++|+++|+++....+ +.+.++.++.++.+ .++||||
T Consensus 5 ~~~~~pvt~~li~~~v~vfll~~~~~~-------------------------------~~~~~~~~~~p~~~-~~~~~wr 52 (196)
T 2nr9_A 5 LAQQGKITLILTALCVLIYIAQQLGFE-------------------------------DDIMYLMHYPAYEE-QDSEVWR 52 (196)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHSCCCSGG-GGGCTTH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHcCc-------------------------------HHHHHhhcCCHhhc-ccCCcHH
Confidence 334566999999999999998765321 12333444555544 4599999
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhccCccccCchHHHHHHHHHHHHHHh
Q 037392 135 LITCNWLHGGVFHILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLSALFIQSNISVGASGALFGLLGSMLSELI 214 (389)
Q Consensus 135 llTs~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s~l~~~~~~~vGaSGavfGllg~~~~~~~ 214 (389)
++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++|++|++++.++.++. ++||||++||++++.+..-.
T Consensus 53 l~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~-~vGaSGai~gl~g~~~~~~~ 131 (196)
T 2nr9_A 53 YISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA-FFGLSGVVYAVLGYVFIRDK 131 (196)
T ss_dssp HHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSC-CCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCC-eeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999887655 99999999999997654322
Q ss_pred hhhhh--hhhHHHHHHHHHHHHHHHHh-hcChhHHHHHHHHHHHHHHHHHHHhhc
Q 037392 215 TNWTI--YTNKHFLTLVVIIAINLAVG-ILPHVDNFAHIGGFISGFLLGFVFLIR 266 (389)
Q Consensus 215 ~~~~~--~~~~~l~~l~~~~~~~~~~g-~~p~v~~~aHlgG~l~G~l~g~~ll~~ 266 (389)
.+.+. .+.+....+.+.+++.+... ..+++|+.||+||+++|+++++.+.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~ 186 (196)
T 2nr9_A 132 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKL 186 (196)
T ss_dssp SSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhc
Confidence 22211 11111111111122222211 224899999999999999999988754
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=26.73 E-value=4.1e+02 Score=25.05 Aligned_cols=40 Identities=13% Similarity=-0.072 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhh
Q 037392 147 HILANMLSLLVIGIRLEQEFGFIRVGLLYIISGFGGSLLS 186 (389)
Q Consensus 147 HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l~s 186 (389)
..+..++.....|...+|.+|+++.+.+-.+....+.++.
T Consensus 63 ~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~ 102 (491)
T 4aps_A 63 YASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVL 102 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 3455566666777666665799988776655555555443
No 4
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=24.89 E-value=54 Score=18.79 Aligned_cols=21 Identities=33% Similarity=0.944 Sum_probs=14.1
Q ss_pred CCCCCCCCCCceeeeecCCCCCcCCCCccccc
Q 037392 319 VDANDHCSWCHYLSCVPTSRWSCRTEPAFCST 350 (389)
Q Consensus 319 ~~~~~~C~~C~y~~C~p~~~~~c~~~~~~c~~ 350 (389)
..++..|..| .|++.+.||+.
T Consensus 5 ~ypnaachpc-----------~c~~rp~yc~~ 25 (26)
T 1p1p_A 5 SYPNAACHPC-----------SCKDRPSYCGQ 25 (26)
T ss_dssp TSCCSSCCTT-----------TSTTCCGGGCC
T ss_pred cCCCcccccc-----------ccCCCCCccCc
Confidence 4456677666 57777888863
No 5
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=15.22 E-value=2.1e+02 Score=20.15 Aligned_cols=28 Identities=25% Similarity=0.418 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037392 288 KFMTYQCILWIVSLVLVIVGLTLGLVML 315 (389)
Q Consensus 288 k~~~~~~~~~~~~~~~li~~~~~~~v~l 315 (389)
.++-+..+..+++++.+++|++..++-+
T Consensus 26 d~~Ef~~iak~~~iG~~i~G~iGf~Ikl 53 (61)
T 3mp7_B 26 NWATYKRAAKITGLGIILIGLIGMLIRI 53 (61)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778888888877655544
No 6
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=14.42 E-value=2.3e+02 Score=21.20 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037392 287 RKFMTYQCILWIVSLVLVIVGLTLGLVML 315 (389)
Q Consensus 287 ~k~~~~~~~~~~~~~~~li~~~~~~~v~l 315 (389)
..++-++.+..+.+++.+++|++..++-+
T Consensus 42 Pdr~Ef~~iak~t~iG~~imG~IGfiIkL 70 (80)
T 2ww9_B 42 PDLKEYTKIVKAVGIGFIAVGIIGYAIKL 70 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777888888888887666544
No 7
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=13.36 E-value=29 Score=37.19 Aligned_cols=68 Identities=25% Similarity=0.657 Sum_probs=39.2
Q ss_pred CCCCCCCCce------eeeecCCCCCcCCCCcccccc----------------cC--CCceEEEecCCCceeeeec---c
Q 037392 321 ANDHCSWCHY------LSCVPTSRWSCRTEPAFCSTT----------------QD--GNQLNVTCSSNGKSNLYIL---S 373 (389)
Q Consensus 321 ~~~~C~~C~y------~~C~p~~~~~c~~~~~~c~~~----------------~~--~~~~~~~c~~~~~~~~~~~---~ 373 (389)
+...|..|.. .-|.-.++|+||+......+. .- =....|.|-.-|..+++.+ .
T Consensus 10 ~~~~c~yc~~~~~~~~~~c~~~~~wfcn~~~~~~~shi~~hl~~~~~~~~~l~~~~~~~~~~~~c~~c~~~n~f~lg~~~ 89 (802)
T 2xzl_A 10 SDNSCAYCGIDSAKCVIKCNSCKKWFCNTKNGTSSSHIVNHLVLSHHNVVSLHPDSDLGDTVLECYNCGRKNVFLLGFVS 89 (802)
T ss_dssp --CCCTTTCCCCTTTEEEETTTCCEEECCCSSSSSCHHHHHHHHHTCCCEEECTTSSSCSCBCCCSSSCCCCTTTEEEEC
T ss_pred ChhhCcccCCCCCceEEEeCCCCcEecCCCCCCCccHHHHHHHHccCCeeeccCCCCCCCceeEeecCCCCceeeeeeee
Confidence 3456777754 457788999999875422110 00 1355688877776777744 6
Q ss_pred CCChhhHHHHHhhhc
Q 037392 374 NPSSSQIQSLCTELC 388 (389)
Q Consensus 374 ~~~~~~~~~~c~~~~ 388 (389)
.++++.+--+|++-|
T Consensus 90 ~~~~~~~~~~cr~~c 104 (802)
T 2xzl_A 90 AKSEAVVVLLCRIPC 104 (802)
T ss_dssp ------CEEEETTTT
T ss_pred ccCCceEEEEeCCcc
Confidence 667777788899888
No 8
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=13.34 E-value=2.6e+02 Score=20.52 Aligned_cols=28 Identities=11% Similarity=0.203 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037392 288 KFMTYQCILWIVSLVLVIVGLTLGLVML 315 (389)
Q Consensus 288 k~~~~~~~~~~~~~~~li~~~~~~~v~l 315 (389)
.++-+..+..+++++.+++|++..++-+
T Consensus 30 dr~EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 30 TKDEYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778888888877655544
No 9
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=10.74 E-value=4.6e+02 Score=24.17 Aligned_cols=9 Identities=22% Similarity=0.936 Sum_probs=6.6
Q ss_pred CCCCCCCCc
Q 037392 321 ANDHCSWCH 329 (389)
Q Consensus 321 ~~~~C~~C~ 329 (389)
....|+||-
T Consensus 126 i~a~C~~C~ 134 (291)
T 3kp9_A 126 LRQFCMYCT 134 (291)
T ss_dssp SCCCCHHHH
T ss_pred HCCCcHHHH
Confidence 357899984
No 10
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=10.59 E-value=2e+02 Score=20.80 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037392 285 SRRKFMTYQCILWIVSLVLVIVGLTLGLVMLL 316 (389)
Q Consensus 285 ~~~k~~~~~~~~~~~~~~~li~~~~~~~v~l~ 316 (389)
+|..++-++.+..+.+++.+++|++..++-+.
T Consensus 26 ~KPdr~Ef~~iak~~~iG~~i~G~IGf~IklI 57 (68)
T 2wwb_B 26 TKPDRKEFQKIAMATAIGFAIMGFIGFFVKLI 57 (68)
T ss_dssp CCCCTHHHHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!