BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037393
(503 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A0E|A Chain A, Xylose Isomerase From Thermotoga Neapolitana
pdb|1A0E|D Chain D, Xylose Isomerase From Thermotoga Neapolitana
Length = 443
Score = 476 bits (1225), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/435 (53%), Positives = 296/435 (68%), Gaps = 1/435 (0%)
Query: 70 GEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFG 129
EFFP IPK+++EG S N LAFK+Y+PEE+I GK +KD ++FSVAFWHTF G DPFG
Sbjct: 1 AEFFPEIPKVQFEGKESTNPLAFKFYDPEEIIDGKPLKDHLKFSVAFWHTFVNEGRDPFG 60
Query: 130 VPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDE 189
PT PW T+ M A R+ A FEF +KL ++++CFHDRDIAP+G+TL+E N LD+
Sbjct: 61 DPTADRPWNRYTDPMDKAFARVDALFEFCEKLNIEYFCFHDRDIAPEGKTLRETNKILDK 120
Query: 190 VVALAKE-LQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVTHYLG 248
VV KE ++ + V+ LWGTA LFSHPRYMHG +E+T LG
Sbjct: 121 VVERIKERMKDSNVKLLWGTANLFSHPRYMHGAATTCSADVFAYAAAQVKKALEITKELG 180
Query: 249 GENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKH 308
GE YVFWGGREGY++LLNTD+G E++++A F A Y K+IGF G LIEPKP+EPTKH
Sbjct: 181 GEGYVFWGGREGYETLLNTDLGFELENLARFLRMAVDYAKRIGFTGQFLIEPKPKEPTKH 240
Query: 309 QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGD 368
QYD+D ATA FL+ +GL FK NIE NHATL+GH+ H++ AR+ G LG+IDAN GD
Sbjct: 241 QYDFDVATAYAFLKSHGLDEYFKFNIEANHATLAGHTFQHELRMARILGKLGSIDANQGD 300
Query: 369 PQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMD 428
+GWDTDQF T++ + T M VIK GG GG NFDAK+RR S VEDLFI HI GMD
Sbjct: 301 LLLGWDTDQFPTNVYDTTLAMYEVIKAGGFTKGGLNFDAKVRRASYKVEDLFIGHIAGMD 360
Query: 429 TVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVP 488
T A G + A KL++DG L + + ++Y+SF IG+ I GK DFE LE+ ++ ++P
Sbjct: 361 TFALGFKVAYKLVKDGVLDKFIEEKYRSFREGIGRDIVEGKVDFEKLEEYIIDKETIELP 420
Query: 489 SAKQELAEMIFQSAI 503
S KQE E + S I
Sbjct: 421 SGKQEYLESLINSYI 435
>pdb|1A0C|A Chain A, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|B Chain B, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|C Chain C, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
pdb|1A0C|D Chain D, Xylose Isomerase From Thermoanaerobacterium
Thermosulfurigenes
Length = 438
Score = 469 bits (1207), Expect = e-132, Method: Compositional matrix adjust.
Identities = 227/434 (52%), Positives = 290/434 (66%), Gaps = 1/434 (0%)
Query: 71 EFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGV 130
++F + KIKYEGP S N +FK+YNPEEVI GK M++ +RFS+A+WHTF G+D FG
Sbjct: 2 KYFENVSKIKYEGPKSNNPYSFKFYNPEEVIDGKTMEEHLRFSIAYWHTFTADGTDQFGK 61
Query: 131 PTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEV 190
T PW T+ M +AK R+ A FEF DK+ ++CFHDRDIAP+G+TL+E N NLD +
Sbjct: 62 ATMQRPWNHYTDPMDIAKARVEAAFEFFDKINAPYFCFHDRDIAPEGDTLRETNKNLDTI 121
Query: 191 VALAKE-LQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVTHYLGG 249
VA+ K+ L+ +K + LWGTA LFS+PR++HG +E+T LGG
Sbjct: 122 VAMIKDYLKTSKTKVLWGTANLFSNPRFVHGASTSCNADVFAYSAAQVKKALEITKELGG 181
Query: 250 ENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ 309
ENYVFWGGREGY++LLNTDM E+D+ A F A Y K+IGF+G LIEPKP+EPTKHQ
Sbjct: 182 ENYVFWGGREGYETLLNTDMEFELDNFARFLHMAVDYAKEIGFEGQFLIEPKPKEPTKHQ 241
Query: 310 YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDP 369
YD+D A FLRKY L FK+NIE NHATL+ H H++ AR+NG+LG+IDANTGD
Sbjct: 242 YDFDVANVLAFLRKYDLDKYFKVNIEANHATLAFHDFQHELRYARINGVLGSIDANTGDM 301
Query: 370 QVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDT 429
+GWDTDQF TDI T M VIK GG GG NFDAK+RR S + EDLF+ HI GMD
Sbjct: 302 LLGWDTDQFPTDIRMTTLAMYEVIKMGGFDKGGLNFDAKVRRASFEPEDLFLGHIAGMDA 361
Query: 430 VARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPS 489
A+G + A KL++D + + +RY S+ IG I +GKADF LEK A+E + S
Sbjct: 362 FAKGFKVAYKLVKDRVFDKFIEERYASYKDGIGADIVSGKADFRSLEKYALERSQIVNKS 421
Query: 490 AKQELAEMIFQSAI 503
+QEL E I +
Sbjct: 422 GRQELLESILNQYL 435
>pdb|1A0D|A Chain A, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|B Chain B, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|C Chain C, Xylose Isomerase From Bacillus Stearothermophilus
pdb|1A0D|D Chain D, Xylose Isomerase From Bacillus Stearothermophilus
Length = 440
Score = 437 bits (1125), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/423 (52%), Positives = 288/423 (68%), Gaps = 2/423 (0%)
Query: 72 FFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVP 131
+F I I YEGP+SKN LAFK+YNPEE + K M++ +RFSVA+WHTF G GSDPFG
Sbjct: 2 YFDNISTIAYEGPASKNPLAFKFYNPEEKVGDKTMEEHLRFSVAYWHTFTGDGSDPFGAG 61
Query: 132 TKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVV 191
PW + + M +AK R+ A FEF +KL + F+CFHD DIAP+GETLKE NLD +V
Sbjct: 62 NMIRPW-NKYSGMDLAKARVEAAFEFFEKLNIPFFCFHDVDIAPEGETLKETYKNLDIIV 120
Query: 192 ALAKE-LQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVTHYLGGE 250
+ +E ++ +K + LW TA LF+HPR++HG +E+ LG E
Sbjct: 121 DMIEEYMKTSKTKLLWNTANLFTHPRFVHGAATSCNADVFAYAAAKVKKGLEIAKRLGAE 180
Query: 251 NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQY 310
NYVFWGGREGY++LLNTDM E+D++A F A Y K+IGF G LIEPKP+EPTKHQY
Sbjct: 181 NYVFWGGREGYETLLNTDMKLELDNLARFLHMAVDYAKEIGFDGQFLIEPKPKEPTKHQY 240
Query: 311 DWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQ 370
D+D ATA FL+ YGL + FK NIE NHATL+GH+ H++ AR++G+LG++DAN GD
Sbjct: 241 DFDVATALAFLQTYGLKDYFKFNIEANHATLAGHTFEHELRVARIHGMLGSVDANQGDML 300
Query: 371 VGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTV 430
+GWDTD+F TD+ T M ++KNGGL GG NFDAK+RR S + EDLF AHI GMD+
Sbjct: 301 LGWDTDEFPTDLYSTTLAMYEILKNGGLGRGGLNFDAKVRRGSFEPEDLFYAHIAGMDSF 360
Query: 431 ARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSA 490
A GL+ A +LIED E + +RY+S+ IG++I G ADF LE A++ GE + S
Sbjct: 361 AVGLKVAHRLIEDRVFDEFIEERYKSYTEGIGREIVEGTADFHKLEAHALQLGEIQNQSG 420
Query: 491 KQE 493
+QE
Sbjct: 421 RQE 423
>pdb|6XIA|A Chain A, Refinement Of Glucose Isomerase From Streptomyces Albus At
1.65 Angstroms With Data From An Imaging Plate
Length = 387
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 120/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T++ + + +R + +LG FHD
Sbjct: 9 RFTFGLW-TVGWEGRDPFGDATRT-----ALDPVESVRR--------LAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 55 DDLIPFGSSDSE---RYEHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 232 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 287
>pdb|1XYA|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYA|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYB|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|A Chain A, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|1XYC|B Chain B, X-Ray Crystallographic Structures Of D-Xylose
Isomerase-Substrate Complexes Position The Substrate And
Provide Evidence For Metal Movement During Catalysis
pdb|2GYI|A Chain A, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
pdb|2GYI|B Chain B, Design, Synthesis, And Characterization Of A Potent Xylose
Isomerase Inhibitor, D-Threonohydroxamic Acid, And
High-Resolution X-Ray Crystallographic Structure Of The
Enzyme-Inhibitor Complex
Length = 386
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 105/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ P D ++ + + +LG FHD
Sbjct: 9 RFTFGLW-TVGWQGRDPFGDATR--PALDPVETV-----------QRLAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E +++ + L T + T LF+HP + G
Sbjct: 55 DDLIPFGSSDTERESHIKR---FRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDTRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 232 AQALWAGKLFHIDLN-GQSGIKYDQD 256
>pdb|4XIA|A Chain A, Structures Of D-xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
pdb|4XIA|B Chain B, Structures Of D-xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
pdb|5XIA|A Chain A, Structures Of D-Xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-Sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
pdb|5XIA|B Chain B, Structures Of D-Xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-Sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
Length = 393
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 118/293 (40%), Gaps = 33/293 (11%)
Query: 112 FSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFID------KLGVDF 165
F+ W T TG+DPFGV T RAN + ++ +LG
Sbjct: 9 FTFGLW-TVGWTGADPFGVAT-------------------RANLDPVEAVHKLAELGAYG 48
Query: 166 WCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXX 225
FHD D+ P T E L + + L T ++ T LFSHP + G
Sbjct: 49 ITFHDNDLIPFDATAAEREKILGD---FNQALADTGLKVPMVTTNLFSHPVFKDGGFTSN 105
Query: 226 XXXXXXXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAA 285
+++ +G E +V WGGREG + + D+ +D M ++AA
Sbjct: 106 DRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAG 165
Query: 286 YKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHS 345
Y K G+ + +EPKP EP + F+ + + LN E H ++G +
Sbjct: 166 YIKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLN 225
Query: 346 CHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSV--IKNG 396
H I A L +ID N G + +D D G+ TS +V ++NG
Sbjct: 226 FTHGIAQALWAEKLFHIDLN-GQRGIKYDQDLVFGH-GDLTSAFFTVDLLENG 276
>pdb|3KCO|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Ni2+ Cations And D12-D-Glucose In
The Linear Form (Refined Jointly With X-Ray Structure
3kbn)
pdb|3KCJ|A Chain A, Room Temperature Neutron Structure Of Apo-D-Xylose
Isomerase (Refined Jointly With X-Ray Structure 3kbj)
Length = 388
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ + + +R + +LG FHD
Sbjct: 10 RFTFGLW-TVGWQGRDPFGDATRR-----ALDPVESVRR--------LAELGAHGVTFHD 55
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 56 DDLIPFGSSDSERE---EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 112
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 113 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 172
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 173 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 232
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 233 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 288
>pdb|1O1H|A Chain A, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|1O1H|B Chain B, Structure Of Glucose Isomerase Derivatized With Kr.
pdb|2G4J|A Chain A, Anomalous Substructure Of Glucose Isomerase
pdb|1XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|2XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|4XIS|A Chain A, A Metal-Mediated Hydride Shift Mechanism For Xylose
Isomerase Based On The 1.6 Angstroms Streptomyces
Rubiginosus Structures With Xylitol And D-Xylose
pdb|3N4A|A Chain A, Crystal Structure Of D-Xylose Isomerase In Complex With
S-1,2- Propandiol
Length = 387
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ + + +R + +LG FHD
Sbjct: 9 RFTFGLW-TVGWQGRDPFGDATRR-----ALDPVESVRR--------LAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 55 DDLIPFGSSDSERE---EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 232 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 287
>pdb|1MNZ|A Chain A, Atomic Structure Of Glucose Isomerase
pdb|2GLK|A Chain A, High-Resolution Study Of D-Xylose Isomerase, 0.94a
Resolution.
pdb|2GUB|A Chain A, Crystal Structure Of Metal Free D-Xylose Isomerase.
pdb|2GVE|A Chain A, Time-Of-Flight Neutron Diffraction Structure Of D-Xylose
Isomerase
pdb|3CWH|A Chain A, D-Xylose Isomerase In Complex With Linear Product,
Per-Deuterated Xylulose
pdb|3KBM|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase
Complexed With 2cd(2+) Co-Factors And
D12-D-Alpha-Glucose In The Cyclic Form
pdb|3KBN|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors And D12-D-Glucose In The
Linear Form
pdb|3KBS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2cd(2+) Co-Factors
pdb|3KBV|A Chain A, Room Temperature Structure Of D-Xylose Isomerase In
Complex With 2ni(2+) Co-Factors
pdb|3KBW|A Chain A, Room Temperature X-Ray Mixed-Metal Structure Of D-Xylose
Isomerase In Complex With Ni(2+) And Mg(2+) Co-Factors
pdb|3KBJ|A Chain A, Room Temperature X-Ray Structure Of Apo-D-Xylose Isomerase
pdb|3QYS|A Chain A, Room Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 0.6ni2+ Cation Bound In M2 Metal Binding
Site At Ph5.8
pdb|3QZA|A Chain A, Joint Neutron And X-Ray Structure Of Apo-D-Xylose
Isomerase At Ph5.9
pdb|3U3H|A Chain A, X-Ray Crystallographic Analysis Of D-Xylose
Isomerase-Catalyzed Isomerization Of (R)-Glyceraldehyde
pdb|4A8I|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8L|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8R|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|4A8N|A Chain A, Protein Crystallization And Microgravity: Glucose
Isomerase Crystals Grown During The Pcdf-Protein Mission
pdb|3KCL|A Chain A, Room Temperature Neutron Structure Of D-Xylose Isomerase
In Complex With Two Cd2+ Cations And D12-D-Alpha-Glucose
In The Ring Form (Refined Jointly With X-Ray Structure
3kbm)
pdb|4E3V|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Rubiginosus Cryoprotected In Proline
pdb|4DUO|A Chain A, Room-Temperature X-Ray Structure Of D-Xylose Isomerase In
Complex With 2mg2+ Ions And Xylitol At Ph 7.7
pdb|4DVO|A Chain A, Room-Temperature Joint X-RayNEUTRON STRUCTURE OF D-Xylose
Isomerase In Complex With 2ni2+ And Per-Deuterated
D-Sorbitol At Ph 5.9
Length = 388
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ + + +R + +LG FHD
Sbjct: 10 RFTFGLW-TVGWQGRDPFGDATRR-----ALDPVESVRR--------LAELGAHGVTFHD 55
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 56 DDLIPFGSSDSERE---EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 112
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 113 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 172
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 173 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 232
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 233 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 288
>pdb|1S5N|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
Length = 386
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 105/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ P D ++ + + +LG FHD
Sbjct: 9 RFTFGLW-TVGWQGRDPFGDATR--PALDPVETV-----------QRLAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E +++ + L T + T LF+HP + G
Sbjct: 55 DDLIPFGSSDTERESHIKR---FRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 232 AQALWAGKLFHIDLN-GQSGIKYDQD 256
>pdb|1S5M|A Chain A, Xylose Isomerase In Substrate And Inhibitor Michaelis
States: Atomic Resolution Studies Of A Metal-Mediated
Hydride Shift
pdb|1MUW|A Chain A, The 0.86 Angstrom Structure Of Xylose Isomerase
Length = 386
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 105/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ P D ++ + + +LG FHD
Sbjct: 9 RFTFGLW-TVGWQGRDPFGDATR--PALDPVETV-----------QRLAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E +++ + L T + T LF+HP + G
Sbjct: 55 DDLIPFGSSDTERESHIKR---FRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 232 AQALWAGKLFHIDLN-GQSGIKYDQD 256
>pdb|1OAD|A Chain A, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
pdb|1OAD|B Chain B, Glucose Isomerase From Streptomyces Rubiginosus In P21212
Crystal Form
Length = 388
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ + + +R + +LG FHD
Sbjct: 10 RFTFGLW-TVGWEGRDPFGDATRR-----ALDPVESVRR--------LAELGAHGVTFHD 55
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 56 DDLIPFGSSDSERE---EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 112
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 113 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 172
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 173 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 232
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 233 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 288
>pdb|1GW9|A Chain A, Tri-Iodide Derivative Of Xylose Isomerase From
Streptomyces Rubiginosus
pdb|1XIB|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIC|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XID|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIE|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIF|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIG|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XIH|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-xylose Isomerase
pdb|1XII|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|1XIJ|A Chain A, Modes Of Binding Substrates And Their Analogues To The
Enzyme D-Xylose Isomerase
pdb|8XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
pdb|9XIA|A Chain A, X-Ray Analysis Of D-Xylose Isomerase At 1.9 Angstroms:
Native Enzyme In Complex With Substrate And With A
Mechanism-Designed Inactivator
Length = 388
Score = 83.2 bits (204), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ + + +R + +LG FHD
Sbjct: 10 RFTFGLW-TVGWQGRDPFGDATRR-----ALDPVESVQR--------LAELGAHGVTFHD 55
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 56 DDLIPFGSSDSERE---EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 112
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 113 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 172
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 173 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 232
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 233 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 288
>pdb|3GNX|A Chain A, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
pdb|3GNX|E Chain E, Structure Of Dehydrated D-Xylose Isomerase From
Streptomyces Rubiginosus
Length = 387
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/297 (25%), Positives = 119/297 (40%), Gaps = 20/297 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ + + +R + +LG FHD
Sbjct: 9 RFTFGLW-TVGWQGRDPFGDATRR-----ALDPVESVQR--------LAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E + V + L T ++ T LF+HP + G
Sbjct: 55 DDLIPFGSSDSERE---EHVKRFRQALDDTGMKVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG E YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAETYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDIRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLA-PGGFNF 405
A G L +ID N G + +D D +F A ++ ++++ G + P F+F
Sbjct: 232 AQALWAGKLFHIDLN-GQNGIKYDQDLRFGAGDLRAAFWLVDLLESAGYSGPRHFDF 287
>pdb|1DID|A Chain A, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DID|B Chain B, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DIE|A Chain A, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DIE|B Chain B, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1XLA|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLA|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLB|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLB|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLC|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLC|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLD|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLD|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLE|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLE|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLF|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLF|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLG|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLG|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLH|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLH|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLI|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLI|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLJ|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLJ|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLK|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLK|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLL|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLL|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
Length = 394
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 120/288 (41%), Gaps = 23/288 (7%)
Query: 112 FSVAFWHTFRGTGSDPFGVPT-KSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
F+ W T TG+DPFGV T K+ + + +A +LG FHD
Sbjct: 10 FTFGLW-TVGWTGADPFGVATRKNLDPVEAVHKLA--------------ELGAYGITFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P T E L + + L+ T ++ T LFSHP + G
Sbjct: 55 NDLIPFDATEAEREKILGD---FNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ +G E +V WGGREG + + D+ +D M ++AA Y K
Sbjct: 112 RFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDK 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ + +EPKP EP + F+ + + LN E H ++G + H I
Sbjct: 172 GYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSV--IKNG 396
A L +ID N G + +D D + G+ TS +V ++NG
Sbjct: 232 AQALWAEKLFHIDLN-GQRGIKYDQD-LVFGHGDLTSAFFTVDLLENG 277
>pdb|1CLK|A Chain A, Crystal Structure Of Streptomyces Diastaticus No.7 Strain
M1033 Xylose Isomerase At 1.9 A Resolution With
Pseudo-I222 Space Group
Length = 387
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
+F+ W T G DPFG T+ G A + RR+ +LG FHD
Sbjct: 9 KFTFGLW-TVGWQGRDPFGDATR------GALDPAESVRRLA-------ELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G T E + + + L T ++ T LF+HP + G
Sbjct: 55 DDLIPFGATDSE---RAEHIKRFRQALDETGMKVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAQTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + +N E H ++G + H I
Sbjct: 172 GYDTPFAIEPKPNEPRGDILLPTIGHALAFIDGLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 232 AQALWAGKLFHIDLN-GQSGIKYDQD 256
>pdb|1XYL|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYL|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|A Chain A, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
pdb|1XYM|B Chain B, The Role Of The Divalent Metal Ion In Sugar Binding, Ring
Opening, And Isomerization By D-Xylose Isomerase:
Replacement Of A Catalytic Metal By An Amino-Acid
Length = 386
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 105/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ P D ++ + + +LG FHD
Sbjct: 9 RFTFGLW-TVGWQGRDPFGDATR--PALDPVETV-----------QRLAELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E +++ + L T + T LF+HP + G
Sbjct: 55 DDLIPFGSSDTERESHIKR---FRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ I+PKP EP A F+ + + +N E H ++G + H I
Sbjct: 172 GYDTRFAIKPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 232 AQALWAGKLFHIDLN-GQSGIKYDQD 256
>pdb|1QT1|A Chain A, Crystal Structure Of Xylose Isomerase From Streptomyces
Diastaticus No.7 M1033 At 1.85 A Resolution
pdb|1QT1|B Chain B, Crystal Structure Of Xylose Isomerase From Streptomyces
Diastaticus No.7 M1033 At 1.85 A Resolution
Length = 387
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 104/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
+F+ W T G DPFG T+ G A + RR+ +LG FHD
Sbjct: 9 KFTFGLW-TVGWQGRDPFGDATR------GALDPAESVRRLA-------ELGAHGVTFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G T E + + + L T ++ T LF+HP + G
Sbjct: 55 DDLIPFGATDSE---RAEHIKRFRQGLDETGMKVPMATTNLFTHPVFKDGGFTANDRDVR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 112 RYALRKTIRNIDLAVELGAQTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQ 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + +N E H ++G + H I
Sbjct: 172 GYDTPFAIEPKPNEPRGDILLPTIGHALAFIDGLERPELYGVNPEVGHEQMAGLNFPHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 232 AQALWAGKLFHIDLN-GQSGIKYDQD 256
>pdb|1DXI|A Chain A, Structure Determination Of Glucose Isomerase From
Streptomyces Murinus At 2.6 Angstroms Resolution
pdb|1DXI|B Chain B, Structure Determination Of Glucose Isomerase From
Streptomyces Murinus At 2.6 Angstroms Resolution
Length = 388
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 105/266 (39%), Gaps = 18/266 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG T+ P D ++ + + +LG FHD
Sbjct: 10 RFTFGLW-TVGWQGRDPFGDATR--PALDPVETV-----------QRLAELGAYGVTFHD 55
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P G + E +++ + L T + T LF+HP + G
Sbjct: 56 DDLIPFGSSDTERESHIKR---FRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVR 112
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ LG + YV WGGREG +S D+ +D M F+ Y
Sbjct: 113 RYALRKTIGNIDLAAELGAKTYVAWGGREGAESGGAKDVRDALDRMKEAFDLLGEYVTAQ 172
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ IEPKP EP A F+ + + +N E H ++G + H I
Sbjct: 173 GYDLRFAIEPKPNEPRGDILLPTVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGI 232
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTD 376
A G L +ID N G + +D D
Sbjct: 233 AQALWAGKLFHIDLN-GQSGIKYDQD 257
>pdb|1XLM|A Chain A, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
pdb|1XLM|B Chain B, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
Length = 394
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 119/289 (41%), Gaps = 25/289 (8%)
Query: 112 FSVAFWHTFRGTGSDPFGVPT-KSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
F+ W T TG+DPFGV T K+ + + +A +LG FHD
Sbjct: 10 FTFGLW-TVGWTGADPFGVATRKNLDPVEAVHKLA--------------ELGAYGITFHD 54
Query: 171 RDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXX 230
D+ P T E L + + L+ T ++ T LFSHP + G
Sbjct: 55 NDLIPFDATEAEREKILGD---FNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIR 111
Query: 231 XXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKI 290
+++ +G E +V WGGREG + + D+ +D M ++AA Y K
Sbjct: 112 RFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDK 171
Query: 291 GFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI 350
G+ + +EPKP EP + F+ + + LN E H ++G + H I
Sbjct: 172 GYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNFTHGI 231
Query: 351 ETARLNGLLGNIDANTGDPQVGWDTDQFLT-DIGEATSIMLSV--IKNG 396
A L +ID N Q G +Q L G+ TS +V ++NG
Sbjct: 232 AQALWAEKLFHIDLNG---QRGIKYEQELVFGHGDLTSAFFTVDLLENG 277
>pdb|1BXB|A Chain A, Xylose Isomerase From Thermus Thermophilus
pdb|1BXB|B Chain B, Xylose Isomerase From Thermus Thermophilus
pdb|1BXB|C Chain C, Xylose Isomerase From Thermus Thermophilus
pdb|1BXB|D Chain D, Xylose Isomerase From Thermus Thermophilus
Length = 387
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 139/348 (39%), Gaps = 25/348 (7%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG + + + + + + + +LG HD
Sbjct: 9 RFTFGLW-TVGNVGRDPFGDAVR-----ERLDPVYVVHK--------LAELGAYGVNLHD 54
Query: 171 RDIAPDGETLKEANANLDEVVA-LAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXX 229
D+ P G +E D++V K L T ++ TA LFS P + G
Sbjct: 55 EDLIPRGTPPQER----DQIVRRFKKALDETGLKVPMVTANLFSDPAFKDGAFTSPDPWV 110
Query: 230 XXXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKK 289
M++ LG E YV W GREG + + D + AAY +
Sbjct: 111 RAYALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAED 170
Query: 290 IGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHD 349
G+ +EPKP EP Y + F+ F LN E H T++G + H
Sbjct: 171 QGYGYRFALEPKPNEPRGDIYFATVGSMLAFIHTLDRPERFGLNPEFAHETMAGLNFVHA 230
Query: 350 IETARLNGLLGNIDANTGDPQVG-WDTD-QFLTDIGEATSIMLSVIKNGGLAPGGFNFDA 407
+ A G L +ID N D ++ +D D +F ++ +A ++ ++++ G G +FDA
Sbjct: 231 VAQALDAGKLFHIDLN--DQRMSRFDQDLRFGSENLKAAFFLVDLLESSGYQ-GPRHFDA 287
Query: 408 KLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQ 455
R + D E ++ M T A ED + EL+ YQ
Sbjct: 288 HALR-TEDEEGVWAFARGCMRTYLILKERAEAFREDPEVKELLAAYYQ 334
>pdb|1BXC|A Chain A, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|B Chain B, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|C Chain C, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|D Chain D, Xylose Isomerase From Thermus Caldophilus
Length = 387
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 87/347 (25%), Positives = 137/347 (39%), Gaps = 23/347 (6%)
Query: 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHD 170
RF+ W T G DPFG + + + + + + + +LGV HD
Sbjct: 9 RFTFGLW-TVGNVGRDPFGDAVR-----ERLDPVYVGHK--------LAELGVHGVNLHD 54
Query: 171 RDIAPDGETLKEANANLDEVVA-LAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXX 229
D+ P G +E D++V + L T ++ T LFS P + G
Sbjct: 55 EDLIPRGTPPQER----DQIVRRFKRALDETGLKVPMVTGNLFSDPGFKDGGFTSRDPWV 110
Query: 230 XXXXXXXXXXXMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKK 289
M++ LG E YV W GREG + + D + AAY +
Sbjct: 111 RAYAFRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREPLNFMAAYAED 170
Query: 290 IGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHD 349
G+ +EPKP EP Y + + F LN E H T++G + H
Sbjct: 171 QGYGYRFALEPKPNEPRGDIYFATVGSMLALIHTLERPERFGLNPEFAHETMAGLNFVHA 230
Query: 350 IETARLNGLLGNIDANTGDPQVGWDTD-QFLTDIGEATSIMLSVIKNGGLAPGGFNFDAK 408
+ A G L +ID N G +D D +F ++ +A +++ ++++ G G +FDA
Sbjct: 231 VAQALDAGKLLHIDLN-GQRMNRFDQDLRFGSENLKAAFLLVDLLESSGYQ-GPRHFDAH 288
Query: 409 LRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQ 455
R + D E ++ M T A ED + EL+ YQ
Sbjct: 289 ALR-TEDEEGVWAFARGCMRTYLILKERAEAFREDPEVKELLAAYYQ 334
>pdb|2XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|2XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 81/295 (27%), Positives = 112/295 (37%), Gaps = 21/295 (7%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 NTGDPQVGWDTDQFLT----DIGEATSIMLSVIKNG-GLAP---GGFNFDAKLRR 411
N Q G DQ L D+ A S ++ +++NG AP G NFD K R
Sbjct: 246 NG---QHGPKFDQDLVFGHGDLLNAFS-LVDLLENGPDGAPAYDGPRNFDYKPSR 296
>pdb|1XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|1XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
pdb|4XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|4XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|6XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|7XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|5XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|5XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|3XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|3XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
Length = 393
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|2XIM|A Chain A, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|B Chain B, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|C Chain C, Arginine Residues As Stabilizing Elements In Proteins
pdb|2XIM|D Chain D, Arginine Residues As Stabilizing Elements In Proteins
Length = 393
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|8XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|8XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|9XIM|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP +
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNQ 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|3XIN|A Chain A, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|B Chain B, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|C Chain C, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|3XIN|D Chain D, Protein Engineering Of Xylose (Glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
Length = 393
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ I+PKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIQPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E H +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|1XIN|A Chain A, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|B Chain B, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|C Chain C, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1XIN|D Chain D, Protein Engineering Of Xylose (glucose) Isomerase From
Actinoplanes Missouriensis. 1. Crystallography And Site-
Directed Mutagenesis Of Metal Binding Sites
pdb|1BHW|A Chain A, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|B Chain B, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|C Chain C, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
pdb|1BHW|D Chain D, Low Temperature Middle Resolution Structure Of Xylose
Isomerase From Masc Data
Length = 393
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 88/241 (36%), Gaps = 9/241 (3%)
Query: 128 FGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL---GVDFWCFHDRDIAPDGETLKEAN 184
FG+ T W D + A R E + KL G FHD D+ P G +A
Sbjct: 12 FGLWTVGWQARD---AFGDATRTALDPVEAVHKLAEIGAYGITFHDDDLVPFG---SDAQ 65
Query: 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGXXXXXXXXXXXXXXXXXXXXMEVT 244
+ K L T + T LF+HP + G M++
Sbjct: 66 TRDGIIAGFKKALDETGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYAIRKVLRQMDLG 125
Query: 245 HYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQE 304
LG + V WGGREG + D+ +D A Y + G+ IEPKP E
Sbjct: 126 AELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNE 185
Query: 305 PTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364
P A A F+++ F +N E + +S + I A + L +ID
Sbjct: 186 PRGDILLPTAGHAIAFVQELERPELFGINPETGNEQMSNLNFTQGIAQALWHKKLFHIDL 245
Query: 365 N 365
N
Sbjct: 246 N 246
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 114 VAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDI 173
VAF + + G + + KS P++ G A R ++ + D L D+DI
Sbjct: 169 VAFDYAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYPYRDNL-------LDKDI 221
Query: 174 APDGETLKEANANLDEVVALAKELQGTKVRPLWG 207
A DGE E NL + A L + P+ G
Sbjct: 222 ATDGELAAERAINLIDKQIGAANLAAVIIEPIAG 255
>pdb|2KS6|A Chain A, Nmr Solution Structure Of Alg13 --- Obtained With
Iterative Cs-Rosetta From Backbone Nmr Data
Length = 201
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 392 VIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLI 441
V+ NG L GF+F K++ D DL I+H G ++ LR LI
Sbjct: 85 VLMNGKLKVIGFDFSTKMQSIIRDYSDLVISH-AGTGSILDSLRLNKPLI 133
>pdb|2JZC|A Chain A, Nmr Solution Structure Of Alg13: The Sugar Donor Subunit
Of A Yeast N-Acetylglucosamine Transferase. Northeast
Structural Genomics Consortium Target Yg1
Length = 224
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 392 VIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLI 441
V+ NG L GF+F K++ D DL I+H G ++ LR LI
Sbjct: 108 VLMNGKLKVIGFDFSTKMQSIIRDYSDLVISH-AGTGSILDSLRLNKPLI 156
>pdb|4GK6|A Chain A, X-Ray Crystal Structure Of A Hypothetical Deoxyuridine
5-Triphosphate Nucleotidohydrolase From Mycobacterium
Abscessus
Length = 138
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 10/76 (13%)
Query: 383 GEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIE 442
G A + LS++ + G G+ + K+ + D E + +ARG R A L++
Sbjct: 67 GLAARVGLSIVNSPGTIDAGYRGEVKVNLINLDSEVPIV--------IARGDRIAQLLVQ 118
Query: 443 DGSLPELVRKRYQSFD 458
LPELV SFD
Sbjct: 119 QVELPELV--EVDSFD 132
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 96 NPEEVILGKKMKDWMRFSVAFWHTFRGTGS 125
P E + DW RF V WH+FR G+
Sbjct: 320 TPREAARLQGFPDWFRFHVTKWHSFRQIGN 349
>pdb|1UXB|A Chain A, Adenovirus Ad19p Fibre Head In Complex With Sialyl-Lactose
pdb|1UXB|B Chain B, Adenovirus Ad19p Fibre Head In Complex With Sialyl-Lactose
pdb|1UXB|C Chain C, Adenovirus Ad19p Fibre Head In Complex With Sialyl-Lactose
Length = 194
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 283 AAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311
+ AY+K IGF NL+ PKP K+ D
Sbjct: 106 STAYEKAIGFMPNLVAYPKPSNSKKYARD 134
>pdb|1UXA|A Chain A, Adenovirus Ad37 Fibre Head In Complex With Sialyl-Lactose
pdb|1UXA|B Chain B, Adenovirus Ad37 Fibre Head In Complex With Sialyl-Lactose
pdb|1UXA|C Chain C, Adenovirus Ad37 Fibre Head In Complex With Sialyl-Lactose
pdb|1UXE|A Chain A, Adenovirus Ad37 Fibre Head
pdb|1UXE|B Chain B, Adenovirus Ad37 Fibre Head
pdb|1UXE|C Chain C, Adenovirus Ad37 Fibre Head
pdb|2J12|A Chain A, Ad37 Fibre Head In Complex With Car D1
pdb|2WBW|A Chain A, Ad37 Fibre Head In Complex With Car D1 And Sialic Acid
pdb|2WGT|A Chain A, Structure Of Human Adenovirus Serotype 37 Fibre Head In
Complex With A Sialic Acid Derivative, O-Methyl 5-N-
Propaonyl-3,5-Dideoxy-D-Glycero-A-D-Galacto-2-
Nonulopyranosylonic Acid
pdb|2WGT|B Chain B, Structure Of Human Adenovirus Serotype 37 Fibre Head In
Complex With A Sialic Acid Derivative, O-Methyl 5-N-
Propaonyl-3,5-Dideoxy-D-Glycero-A-D-Galacto-2-
Nonulopyranosylonic Acid
pdb|2WGT|C Chain C, Structure Of Human Adenovirus Serotype 37 Fibre Head In
Complex With A Sialic Acid Derivative, O-Methyl 5-N-
Propaonyl-3,5-Dideoxy-D-Glycero-A-D-Galacto-2-
Nonulopyranosylonic Acid
pdb|2WGU|A Chain A, Structure Of Human Adenovirus Serotype 37 Fibre Head In
Complex With A Sialic Acid Derivative, O-Methyl 5-N-
Methoxycarbonyl -3,5-Dideoxy-D-Glycero-A-D-Galacto-2-
Nonulopyranosylonic Acid
pdb|2WGU|B Chain B, Structure Of Human Adenovirus Serotype 37 Fibre Head In
Complex With A Sialic Acid Derivative, O-Methyl 5-N-
Methoxycarbonyl -3,5-Dideoxy-D-Glycero-A-D-Galacto-2-
Nonulopyranosylonic Acid
pdb|2WGU|C Chain C, Structure Of Human Adenovirus Serotype 37 Fibre Head In
Complex With A Sialic Acid Derivative, O-Methyl 5-N-
Methoxycarbonyl -3,5-Dideoxy-D-Glycero-A-D-Galacto-2-
Nonulopyranosylonic Acid
pdb|3N0I|A Chain A, Crystal Structure Of Ad37 Fiber Knob In Complex With Gd1a
Oligosaccharide
pdb|3N0I|B Chain B, Crystal Structure Of Ad37 Fiber Knob In Complex With Gd1a
Oligosaccharide
pdb|3N0I|C Chain C, Crystal Structure Of Ad37 Fiber Knob In Complex With Gd1a
Oligosaccharide
pdb|3QND|A Chain A, Crystal Structure Of Ad37 Fiber Knob In Complex With
Trivalent Sialic Acid Inhibitor
pdb|3QND|B Chain B, Crystal Structure Of Ad37 Fiber Knob In Complex With
Trivalent Sialic Acid Inhibitor
pdb|3QND|C Chain C, Crystal Structure Of Ad37 Fiber Knob In Complex With
Trivalent Sialic Acid Inhibitor
pdb|3QND|E Chain E, Crystal Structure Of Ad37 Fiber Knob In Complex With
Trivalent Sialic Acid Inhibitor
pdb|3QND|F Chain F, Crystal Structure Of Ad37 Fiber Knob In Complex With
Trivalent Sialic Acid Inhibitor
pdb|3QND|G Chain G, Crystal Structure Of Ad37 Fiber Knob In Complex With
Trivalent Sialic Acid Inhibitor
Length = 194
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 283 AAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311
+ AY+K IGF NL+ PKP K+ D
Sbjct: 106 STAYEKAIGFMPNLVAYPKPSNSKKYARD 134
>pdb|2PBI|A Chain A, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|C Chain C, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 424
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 127 PFGVPTKSWPWEDGTNSMAMAKRRMRA----------NFEFIDKLGVDFWCFHDRDIAPD 176
P+ PT+ WP ED ++ +AKR ++ N++F++K W F
Sbjct: 108 PYFWPTQQWPAEDTDYAIYLAKRNIKKKGILEEYEKENYDFLNKKINYKWDFVIMQAKEQ 167
Query: 177 GETLKEAN 184
T KE N
Sbjct: 168 YRTGKERN 175
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,072,493
Number of Sequences: 62578
Number of extensions: 629907
Number of successful extensions: 1544
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1479
Number of HSP's gapped (non-prelim): 39
length of query: 503
length of database: 14,973,337
effective HSP length: 103
effective length of query: 400
effective length of database: 8,527,803
effective search space: 3411121200
effective search space used: 3411121200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)