Query 037393
Match_columns 503
No_of_seqs 228 out of 579
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 11:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037393.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037393hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02923 xylose isomerase 100.0 3E-178 6E-183 1365.4 47.8 477 26-503 1-478 (478)
2 PRK12465 xylose isomerase; Pro 100.0 3E-166 6E-171 1276.5 44.6 433 70-503 10-443 (445)
3 COG2115 XylA Xylose isomerase 100.0 2E-163 4E-168 1221.7 37.6 435 69-503 2-438 (438)
4 TIGR02630 xylose_isom_A xylose 100.0 4E-162 9E-167 1249.8 45.9 432 72-503 1-434 (434)
5 PRK05474 xylose isomerase; Pro 100.0 5E-161 1E-165 1245.7 45.9 433 71-503 1-435 (437)
6 PRK12677 xylose isomerase; Pro 100.0 2.2E-65 4.7E-70 531.6 39.8 353 105-482 2-381 (384)
7 TIGR02631 xylA_Arthro xylose i 100.0 7.7E-63 1.7E-67 512.3 39.8 347 109-482 6-380 (382)
8 TIGR02629 L_rham_iso_rhiz L-rh 100.0 4.8E-47 1E-51 394.2 28.4 291 110-437 41-348 (412)
9 TIGR02635 RhaI_grampos L-rhamn 100.0 9.2E-45 2E-49 376.7 31.3 291 109-435 10-313 (378)
10 COG4952 Predicted sugar isomer 100.0 1.6E-33 3.4E-38 281.3 23.8 297 109-441 48-361 (430)
11 PRK01076 L-rhamnose isomerase; 100.0 1.6E-30 3.4E-35 269.1 22.8 272 140-438 69-357 (419)
12 TIGR01748 rhaA L-rhamnose isom 100.0 1.4E-29 3E-34 261.6 22.8 296 111-437 28-352 (414)
13 TIGR00542 hxl6Piso_put hexulos 99.8 4.1E-18 8.8E-23 168.1 27.2 245 153-435 20-273 (279)
14 cd00019 AP2Ec AP endonuclease 99.8 3E-18 6.6E-23 168.7 25.6 243 150-423 11-272 (279)
15 PF01261 AP_endonuc_2: Xylose 99.8 1.1E-19 2.5E-24 166.9 13.9 205 155-378 1-205 (213)
16 PRK09856 fructoselysine 3-epim 99.8 1.2E-17 2.6E-22 163.4 27.4 239 151-420 15-260 (275)
17 PF06134 RhaA: L-rhamnose isom 99.8 6E-19 1.3E-23 182.4 17.0 253 162-435 86-353 (417)
18 PRK13210 putative L-xylulose 5 99.8 3E-17 6.5E-22 160.8 27.3 237 152-420 19-267 (284)
19 PRK13209 L-xylulose 5-phosphat 99.8 2.2E-17 4.7E-22 162.5 26.2 222 152-408 24-255 (283)
20 TIGR03234 OH-pyruv-isom hydrox 99.8 4.9E-17 1.1E-21 157.9 25.8 226 151-410 16-243 (254)
21 PRK01060 endonuclease IV; Prov 99.8 6.2E-17 1.4E-21 159.1 20.9 229 151-407 14-260 (281)
22 smart00518 AP2Ec AP endonuclea 99.7 2.5E-15 5.4E-20 147.2 21.3 201 151-376 12-223 (273)
23 PRK09989 hypothetical protein; 99.7 2.6E-14 5.7E-19 139.8 25.1 226 153-411 19-245 (258)
24 PRK09997 hydroxypyruvate isome 99.6 1.6E-13 3.5E-18 134.2 24.3 226 153-412 19-246 (258)
25 TIGR00587 nfo apurinic endonuc 99.6 1E-13 2.2E-18 138.0 20.6 199 151-372 13-223 (274)
26 COG1082 IolE Sugar phosphate i 99.5 4.1E-12 8.9E-17 123.3 24.8 190 153-369 19-209 (274)
27 PTZ00372 endonuclease 4-like p 99.3 1.9E-10 4.1E-15 122.0 18.8 201 153-373 145-355 (413)
28 PRK03906 mannonate dehydratase 99.3 5.7E-10 1.2E-14 117.5 22.1 180 184-368 79-303 (385)
29 PRK02308 uvsE putative UV dama 98.8 4.8E-07 1E-11 92.7 21.4 189 150-369 49-251 (303)
30 COG3622 Hfi Hydroxypyruvate is 98.7 2E-06 4.3E-11 85.9 21.5 223 155-412 21-246 (260)
31 COG3623 SgaU Putative L-xylulo 98.7 3.7E-06 8.1E-11 83.8 21.5 247 156-437 25-283 (287)
32 TIGR00695 uxuA mannonate dehyd 98.6 4.7E-06 1E-10 88.4 22.1 165 226-395 151-336 (394)
33 COG0648 Nfo Endonuclease IV [D 98.5 8.7E-06 1.9E-10 83.0 17.8 199 151-376 16-225 (280)
34 COG4806 RhaA L-rhamnose isomer 98.0 5.9E-05 1.3E-09 77.2 11.4 268 142-437 71-352 (419)
35 TIGR00629 uvde UV damage endon 97.3 0.032 7E-07 58.1 20.5 162 150-342 53-225 (312)
36 COG4130 Predicted sugar epimer 97.0 0.091 2E-06 52.7 19.3 234 150-425 18-265 (272)
37 KOG3997 Major apurinic/apyrimi 96.7 0.025 5.3E-07 56.7 12.2 151 216-377 67-230 (281)
38 PRK09997 hydroxypyruvate isome 96.1 0.19 4.1E-06 49.5 15.0 66 146-212 82-148 (258)
39 PF03851 UvdE: UV-endonuclease 95.8 0.5 1.1E-05 48.6 16.7 183 150-367 46-251 (275)
40 PRK09989 hypothetical protein; 94.8 1.2 2.6E-05 43.9 15.2 93 144-252 80-173 (258)
41 TIGR03356 BGL beta-galactosida 93.6 1.6 3.6E-05 47.1 14.5 149 150-306 55-224 (427)
42 TIGR03234 OH-pyruv-isom hydrox 92.8 4.6 0.0001 39.5 15.2 68 142-210 77-145 (254)
43 KOG4518 Hydroxypyruvate isomer 91.9 5.5 0.00012 40.0 14.2 163 235-412 86-248 (264)
44 TIGR01233 lacG 6-phospho-beta- 89.5 6.7 0.00015 43.0 13.8 140 150-298 54-213 (467)
45 PF06230 DUF1009: Protein of u 88.0 26 0.00056 35.1 15.5 180 154-358 4-210 (214)
46 PRK13209 L-xylulose 5-phosphat 86.6 30 0.00066 34.3 15.3 64 144-208 94-158 (283)
47 PLN02849 beta-glucosidase 86.2 10 0.00022 42.2 12.8 141 150-298 80-254 (503)
48 KOG0622 Ornithine decarboxylas 83.9 13 0.00029 40.7 11.9 108 174-301 186-293 (448)
49 PRK09852 cryptic 6-phospho-bet 83.2 15 0.00034 40.4 12.4 142 150-298 72-235 (474)
50 PRK09593 arb 6-phospho-beta-gl 82.9 20 0.00043 39.6 13.2 142 150-298 74-237 (478)
51 PRK09589 celA 6-phospho-beta-g 81.1 25 0.00055 38.8 13.2 141 150-297 68-235 (476)
52 PF03786 UxuA: D-mannonate deh 80.7 32 0.00069 36.9 13.2 191 157-366 19-274 (351)
53 PF00150 Cellulase: Cellulase 80.6 15 0.00032 35.6 10.1 137 152-300 24-172 (281)
54 PF01261 AP_endonuc_2: Xylose 80.5 27 0.00058 32.0 11.3 95 144-256 66-163 (213)
55 PRK13210 putative L-xylulose 5 80.3 63 0.0014 31.8 15.3 64 144-208 89-153 (284)
56 PRK15014 6-phospho-beta-glucos 80.0 24 0.00052 39.0 12.5 147 153-306 73-248 (477)
57 PRK09856 fructoselysine 3-epim 79.9 65 0.0014 31.7 15.5 63 145-208 86-149 (275)
58 PRK13511 6-phospho-beta-galact 78.9 21 0.00045 39.2 11.6 138 152-298 57-214 (469)
59 PF10566 Glyco_hydro_97: Glyco 78.7 3 6.6E-05 42.9 4.8 123 234-365 31-158 (273)
60 PRK12677 xylose isomerase; Pro 78.1 1E+02 0.0023 33.1 18.3 64 145-208 110-179 (384)
61 PLN02998 beta-glucosidase 77.8 30 0.00066 38.5 12.5 98 150-255 83-185 (497)
62 cd00019 AP2Ec AP endonuclease 77.8 63 0.0014 32.1 13.8 64 143-208 79-143 (279)
63 PF00232 Glyco_hydro_1: Glycos 77.7 10 0.00023 41.1 8.8 151 150-307 59-230 (455)
64 TIGR00542 hxl6Piso_put hexulos 77.6 79 0.0017 31.4 16.5 64 144-208 89-153 (279)
65 PRK04452 acetyl-CoA decarbonyl 75.8 43 0.00093 35.5 12.3 110 158-302 85-212 (319)
66 PRK05409 hypothetical protein; 75.1 1.1E+02 0.0024 31.9 15.2 169 163-367 28-208 (281)
67 cd07947 DRE_TIM_Re_CS Clostrid 74.5 15 0.00031 37.9 8.4 61 237-299 76-136 (279)
68 PRK09485 mmuM homocysteine met 72.6 94 0.002 32.1 13.8 155 193-366 51-222 (304)
69 PF14488 DUF4434: Domain of un 72.1 16 0.00035 34.7 7.6 135 149-300 20-161 (166)
70 PRK05692 hydroxymethylglutaryl 71.4 16 0.00035 37.6 7.9 107 156-300 33-142 (287)
71 COG0854 PdxJ Pyridoxal phospha 69.9 25 0.00054 35.8 8.5 96 169-292 86-187 (243)
72 KOG3035 Isoamyl acetate-hydrol 68.7 14 0.00031 37.4 6.6 83 179-262 94-180 (245)
73 PF02784 Orn_Arg_deC_N: Pyrido 67.3 72 0.0016 31.4 11.3 107 175-300 134-244 (251)
74 PF08924 DUF1906: Domain of un 65.2 65 0.0014 29.7 9.8 118 157-292 12-130 (136)
75 PLN02814 beta-glucosidase 65.0 75 0.0016 35.5 11.9 148 151-306 79-262 (504)
76 PLN02746 hydroxymethylglutaryl 64.2 52 0.0011 35.2 10.1 124 192-323 72-205 (347)
77 COG3220 Uncharacterized protei 63.9 87 0.0019 32.7 11.1 177 217-408 64-251 (282)
78 COG3622 Hfi Hydroxypyruvate is 63.4 1.9E+02 0.0041 30.0 14.7 153 143-324 79-257 (260)
79 COG1830 FbaB DhnA-type fructos 62.7 43 0.00092 34.7 8.8 94 159-288 107-202 (265)
80 cd00423 Pterin_binding Pterin 62.4 1.8E+02 0.0038 29.3 15.1 128 157-303 32-176 (258)
81 PF02679 ComA: (2R)-phospho-3- 62.4 14 0.0003 37.7 5.2 173 108-338 39-230 (244)
82 COG1312 UxuA D-mannonate dehyd 62.1 2.4E+02 0.0051 30.6 15.0 95 265-366 179-279 (362)
83 KOG3916 UDP-Gal:glucosylcerami 60.7 6.7 0.00015 41.9 2.8 52 111-179 181-232 (372)
84 PF13200 DUF4015: Putative gly 60.4 1.2E+02 0.0027 32.0 12.0 198 149-388 13-250 (316)
85 cd07945 DRE_TIM_CMS Leptospira 59.9 43 0.00092 34.4 8.3 62 237-300 76-137 (280)
86 cd01842 SGNH_hydrolase_like_5 58.7 51 0.0011 32.4 8.2 110 143-255 28-149 (183)
87 PRK14842 undecaprenyl pyrophos 58.6 1.7E+02 0.0038 29.8 12.3 110 149-286 39-152 (241)
88 PRK08227 autoinducer 2 aldolas 57.5 51 0.0011 33.9 8.4 72 160-253 105-176 (264)
89 PRK07534 methionine synthase I 56.4 1.4E+02 0.0029 31.7 11.6 155 193-366 50-212 (336)
90 PF02574 S-methyl_trans: Homoc 55.4 1.7E+02 0.0036 29.9 11.8 161 190-366 43-221 (305)
91 PLN02489 homocysteine S-methyl 54.1 86 0.0019 33.1 9.6 85 274-366 163-249 (335)
92 PF07745 Glyco_hydro_53: Glyco 52.7 2.6E+02 0.0057 29.8 12.9 151 153-324 28-192 (332)
93 cd03174 DRE_TIM_metallolyase D 52.6 95 0.0021 30.3 9.2 109 154-300 24-137 (265)
94 cd06831 PLPDE_III_ODC_like_AZI 52.5 2.1E+02 0.0046 30.7 12.5 103 174-300 143-247 (394)
95 TIGR02631 xylA_Arthro xylose i 50.4 44 0.00096 35.9 6.9 64 145-208 111-180 (382)
96 PF07498 Rho_N: Rho terminatio 49.7 24 0.00053 26.4 3.5 33 469-501 4-37 (43)
97 cd04735 OYE_like_4_FMN Old yel 49.6 3E+02 0.0065 29.0 12.8 56 143-198 138-208 (353)
98 PRK05265 pyridoxine 5'-phospha 49.4 37 0.0008 34.7 5.8 74 187-292 112-185 (239)
99 PRK14827 undecaprenyl pyrophos 48.9 3.2E+02 0.007 28.8 12.7 96 149-260 98-197 (296)
100 COG3867 Arabinogalactan endo-1 48.7 2.6E+02 0.0056 30.2 11.8 135 152-300 66-222 (403)
101 cd06565 GH20_GcnA-like Glycosy 48.4 1.5E+02 0.0032 30.6 10.2 138 143-293 15-180 (301)
102 TIGR00559 pdxJ pyridoxine 5'-p 48.4 45 0.00098 34.0 6.2 73 188-292 110-183 (237)
103 PF02065 Melibiase: Melibiase; 48.3 11 0.00024 40.7 2.1 149 235-394 58-219 (394)
104 cd07948 DRE_TIM_HCS Saccharomy 48.1 55 0.0012 33.3 6.9 60 238-299 74-133 (262)
105 PRK06852 aldolase; Validated 47.2 62 0.0013 34.1 7.2 76 161-257 133-211 (304)
106 cd07938 DRE_TIM_HMGL 3-hydroxy 47.0 1.4E+02 0.0031 30.5 9.7 62 238-301 76-137 (274)
107 PF07172 GRP: Glycine rich pro 46.9 14 0.0003 32.5 2.0 19 26-44 1-20 (95)
108 PF07555 NAGidase: beta-N-acet 45.3 73 0.0016 33.5 7.4 93 146-259 88-191 (306)
109 PRK05265 pyridoxine 5'-phospha 45.3 1.9E+02 0.0041 29.7 10.0 133 141-338 24-157 (239)
110 PF13733 Glyco_transf_7N: N-te 44.9 9.4 0.0002 35.8 0.8 23 157-179 106-128 (136)
111 cd00003 PNPsynthase Pyridoxine 44.0 2E+02 0.0044 29.4 10.0 133 141-338 21-154 (234)
112 KOG4518 Hydroxypyruvate isomer 44.0 3.7E+02 0.008 27.4 13.9 95 144-254 81-176 (264)
113 PRK08645 bifunctional homocyst 44.0 2.6E+02 0.0057 31.9 12.1 152 193-366 48-205 (612)
114 COG2896 MoaA Molybdenum cofact 43.7 2.7E+02 0.0059 29.7 11.3 139 156-323 53-214 (322)
115 cd06547 GH85_ENGase Endo-beta- 43.6 57 0.0012 34.6 6.4 103 152-259 93-209 (339)
116 PLN02681 proline dehydrogenase 43.6 5E+02 0.011 28.8 14.9 167 176-369 90-307 (455)
117 TIGR00559 pdxJ pyridoxine 5'-p 43.4 2.2E+02 0.0047 29.2 10.1 133 141-338 21-154 (237)
118 PF00682 HMGL-like: HMGL-like 43.0 1.4E+02 0.003 29.0 8.6 66 235-302 67-132 (237)
119 PRK05157 pyrroloquinoline quin 42.4 38 0.00083 34.6 4.7 54 446-501 18-86 (246)
120 KOG0626 Beta-glucosidase, lact 41.1 2.7E+02 0.0058 31.7 11.2 157 153-317 95-288 (524)
121 PF02585 PIG-L: GlcNAc-PI de-N 40.2 1E+02 0.0022 26.9 6.6 93 194-305 18-112 (128)
122 PRK14834 undecaprenyl pyrophos 40.0 4.3E+02 0.0093 27.1 12.6 157 148-348 44-205 (249)
123 cd07940 DRE_TIM_IPMS 2-isoprop 39.9 1.6E+02 0.0036 29.5 8.8 26 275-300 111-136 (268)
124 COG0529 CysC Adenylylsulfate k 39.1 1.1E+02 0.0023 30.6 6.9 70 156-239 45-119 (197)
125 PRK00035 hemH ferrochelatase; 38.8 39 0.00084 35.0 4.2 97 110-240 225-322 (333)
126 PRK13762 tRNA-modifying enzyme 38.2 4.6E+02 0.01 27.5 12.0 76 233-325 206-288 (322)
127 PF05114 DUF692: Protein of un 37.7 2.6E+02 0.0057 29.0 10.0 123 238-369 77-208 (274)
128 COG2723 BglB Beta-glucosidase/ 37.6 1.3E+02 0.0028 33.6 8.1 176 76-270 41-236 (460)
129 PLN02814 beta-glucosidase 37.4 30 0.00064 38.6 3.3 112 91-220 75-197 (504)
130 KOG3911 Nucleolar protein NOP5 37.4 5.5 0.00012 42.4 -2.2 118 106-242 86-220 (378)
131 PRK09250 fructose-bisphosphate 37.4 1.3E+02 0.0028 32.4 7.9 83 159-257 156-240 (348)
132 TIGR00055 uppS undecaprenyl di 37.3 4.6E+02 0.0099 26.6 12.6 95 150-260 31-129 (226)
133 PRK10240 undecaprenyl pyrophos 37.1 4.6E+02 0.0099 26.6 12.6 111 149-287 24-138 (229)
134 cd04734 OYE_like_3_FMN Old yel 36.3 4.1E+02 0.0089 28.0 11.4 56 143-198 135-205 (343)
135 PF00331 Glyco_hydro_10: Glyco 36.0 2E+02 0.0044 29.9 9.0 36 227-262 252-290 (320)
136 PRK14828 undecaprenyl pyrophos 35.8 5E+02 0.011 26.7 12.5 99 146-260 55-154 (256)
137 cd06828 PLPDE_III_DapDC Type I 35.6 5.2E+02 0.011 26.7 13.1 107 175-302 146-258 (373)
138 PF00150 Cellulase: Cellulase 35.4 4.2E+02 0.009 25.6 11.7 130 229-366 56-202 (281)
139 PF02065 Melibiase: Melibiase; 35.0 6.3E+02 0.014 27.5 12.7 141 150-302 59-234 (394)
140 TIGR02026 BchE magnesium-proto 34.8 1.7E+02 0.0038 32.2 8.7 128 157-327 234-368 (497)
141 cd06810 PLPDE_III_ODC_DapDC_li 34.2 3.5E+02 0.0077 27.9 10.4 107 175-302 142-251 (368)
142 COG0648 Nfo Endonuclease IV [D 34.2 5.7E+02 0.012 26.8 11.8 104 162-284 60-165 (280)
143 COG0646 MetH Methionine syntha 34.1 6.1E+02 0.013 27.1 14.2 165 214-397 113-287 (311)
144 KOG4238 Bifunctional ATP sulfu 33.1 70 0.0015 35.1 5.0 52 156-207 72-128 (627)
145 PRK14831 undecaprenyl pyrophos 33.1 5.5E+02 0.012 26.3 12.5 96 149-260 51-150 (249)
146 cd00475 CIS_IPPS Cis (Z)-Isopr 33.0 5.2E+02 0.011 26.0 12.6 111 149-287 31-145 (221)
147 TIGR03099 dCO2ase_PEP1 pyridox 32.8 6.1E+02 0.013 26.7 12.1 104 175-300 165-275 (398)
148 cd04733 OYE_like_2_FMN Old yel 32.7 5.9E+02 0.013 26.5 13.8 55 144-198 144-213 (338)
149 PRK15014 6-phospho-beta-glucos 32.7 44 0.00094 37.0 3.6 102 91-210 67-177 (477)
150 COG3494 Uncharacterized protei 32.6 6.1E+02 0.013 26.7 12.9 171 151-343 57-258 (279)
151 cd07939 DRE_TIM_NifV Streptomy 32.1 2.1E+02 0.0046 28.6 8.1 61 238-300 72-132 (259)
152 PRK09589 celA 6-phospho-beta-g 32.0 60 0.0013 35.9 4.6 102 91-210 65-175 (476)
153 cd03680 MM_CoA_mutase_ICM_like 31.9 2E+02 0.0044 32.6 8.7 44 313-357 207-250 (538)
154 PRK09852 cryptic 6-phospho-bet 31.8 75 0.0016 35.2 5.2 102 91-210 69-179 (474)
155 cd00959 DeoC 2-deoxyribose-5-p 31.7 4.8E+02 0.01 25.2 10.3 159 154-366 22-181 (203)
156 PRK14836 undecaprenyl pyrophos 31.5 5.9E+02 0.013 26.2 13.0 95 150-260 46-144 (253)
157 smart00518 AP2Ec AP endonuclea 31.5 1.6E+02 0.0035 29.0 7.1 61 144-209 79-141 (273)
158 PRK02048 4-hydroxy-3-methylbut 31.4 4.9E+02 0.011 30.2 11.5 143 156-336 48-206 (611)
159 PF00374 NiFeSe_Hases: Nickel- 31.3 1.3E+02 0.0028 33.7 7.1 94 187-289 110-215 (507)
160 PRK14830 undecaprenyl pyrophos 31.3 5.9E+02 0.013 26.1 12.2 157 148-348 52-213 (251)
161 PTZ00248 eukaryotic translatio 31.2 1.6E+02 0.0034 31.4 7.2 69 222-302 191-271 (319)
162 PRK00694 4-hydroxy-3-methylbut 30.6 6.2E+02 0.014 29.4 12.0 140 156-333 52-207 (606)
163 TIGR01048 lysA diaminopimelate 30.6 6.8E+02 0.015 26.5 12.9 106 174-300 167-278 (417)
164 PRK08883 ribulose-phosphate 3- 30.5 3E+02 0.0065 27.4 8.7 113 153-282 72-217 (220)
165 PRK14838 undecaprenyl pyrophos 30.4 6.1E+02 0.013 25.9 12.7 96 149-260 41-138 (242)
166 cd03679 MM_CoA_mutase_alpha_li 30.3 3.9E+02 0.0086 30.4 10.6 44 313-357 204-247 (536)
167 PF15153 CYTL1: Cytokine-like 30.2 29 0.00064 32.4 1.5 15 43-57 12-26 (132)
168 COG2069 CdhD CO dehydrogenase/ 29.9 7.3E+02 0.016 26.8 11.6 101 141-275 150-270 (403)
169 cd08555 PI-PLCc_GDPD_SF Cataly 29.8 1.6E+02 0.0034 27.6 6.4 88 235-325 13-108 (179)
170 PRK14840 undecaprenyl pyrophos 29.7 6.4E+02 0.014 26.0 12.5 109 150-286 54-166 (250)
171 PF13999 MarB: MarB protein 29.6 1.2E+02 0.0026 25.4 4.7 57 37-97 5-65 (66)
172 KOG1602 Cis-prenyltransferase 29.5 2.9E+02 0.0062 28.9 8.5 131 99-257 29-166 (271)
173 cd00959 DeoC 2-deoxyribose-5-p 29.5 1.7E+02 0.0037 28.2 6.8 23 235-257 131-153 (203)
174 KOG3997 Major apurinic/apyrimi 29.2 4.9E+02 0.011 27.0 9.9 114 143-278 84-205 (281)
175 PRK06245 cofG FO synthase subu 29.1 5.1E+02 0.011 26.8 10.5 113 231-358 40-164 (336)
176 PF01583 APS_kinase: Adenylyls 28.9 1.7E+02 0.0037 27.8 6.5 79 156-257 24-107 (156)
177 PRK14582 pgaB outer membrane N 28.5 3.8E+02 0.0082 31.4 10.2 16 153-168 123-138 (671)
178 PRK09490 metH B12-dependent me 28.4 4.6E+02 0.01 32.9 11.4 185 193-396 70-305 (1229)
179 TIGR03849 arch_ComA phosphosul 28.3 1.6E+02 0.0035 30.0 6.5 114 108-254 26-153 (237)
180 PLN02998 beta-glucosidase 28.3 76 0.0016 35.4 4.6 100 91-208 80-187 (497)
181 cd00245 Glm_e Coenzyme B12-dep 28.0 8.7E+02 0.019 27.0 13.4 97 178-292 140-236 (428)
182 PRK09722 allulose-6-phosphate 27.7 3.8E+02 0.0082 27.1 9.0 40 239-283 181-222 (229)
183 cd06830 PLPDE_III_ADC Type III 27.3 4E+02 0.0086 28.6 9.7 127 280-430 124-267 (409)
184 PRK09593 arb 6-phospho-beta-gl 27.2 1.1E+02 0.0023 34.0 5.5 102 91-210 71-181 (478)
185 PF01255 Prenyltransf: Putativ 27.0 5.1E+02 0.011 25.7 9.7 113 149-289 25-143 (223)
186 cd06842 PLPDE_III_Y4yA_like Ty 27.0 7.4E+02 0.016 26.7 11.7 124 59-208 62-209 (423)
187 PRK01060 endonuclease IV; Prov 26.6 2.8E+02 0.0061 27.4 7.9 61 144-208 84-146 (281)
188 TIGR02090 LEU1_arch isopropylm 26.6 2E+02 0.0044 30.5 7.2 61 237-299 73-133 (363)
189 PRK08745 ribulose-phosphate 3- 26.5 4.6E+02 0.01 26.2 9.3 111 154-281 77-220 (223)
190 cd00598 GH18_chitinase-like Th 26.2 3.7E+02 0.008 25.1 8.2 91 200-304 63-154 (210)
191 TIGR01663 PNK-3'Pase polynucle 26.1 4.3E+02 0.0092 30.0 9.9 67 157-257 389-455 (526)
192 cd02803 OYE_like_FMN_family Ol 26.1 7.1E+02 0.015 25.3 12.2 56 143-198 135-205 (327)
193 PF10281 Ish1: Putative stress 25.9 1.3E+02 0.0029 21.6 4.1 31 471-501 5-37 (38)
194 PLN02746 hydroxymethylglutaryl 25.8 5.3E+02 0.011 27.7 10.1 52 230-285 157-208 (347)
195 PTZ00170 D-ribulose-5-phosphat 25.8 2.8E+02 0.0061 27.5 7.6 39 239-282 185-223 (228)
196 PRK14839 undecaprenyl pyrophos 25.7 5.8E+02 0.013 26.2 9.9 96 149-260 40-139 (239)
197 PRK14456 ribosomal RNA large s 25.4 8.2E+02 0.018 26.4 11.5 86 221-324 239-338 (368)
198 PLN02537 diaminopimelate decar 25.3 5.8E+02 0.013 27.2 10.4 83 201-302 181-269 (410)
199 PLN02951 Molybderin biosynthes 25.2 8.6E+02 0.019 26.0 13.1 127 155-306 99-242 (373)
200 PLN02925 4-hydroxy-3-methylbut 24.6 7.7E+02 0.017 29.3 11.6 141 156-334 117-273 (733)
201 cd04732 HisA HisA. Phosphorib 24.3 5.3E+02 0.012 24.8 9.2 26 141-174 29-54 (234)
202 KOG0186 Proline oxidase [Amino 24.2 2.5E+02 0.0055 31.6 7.5 122 264-391 256-386 (506)
203 COG3669 Alpha-L-fucosidase [Ca 24.1 4.7E+02 0.01 29.1 9.3 160 116-290 26-199 (430)
204 cd06418 GH25_BacA-like BacA is 24.1 5.3E+02 0.011 25.5 9.1 110 157-292 28-142 (212)
205 smart00633 Glyco_10 Glycosyl h 24.0 6.4E+02 0.014 25.0 9.8 29 234-262 202-231 (254)
206 TIGR02660 nifV_homocitr homoci 23.8 3.4E+02 0.0073 28.8 8.2 60 238-299 75-134 (365)
207 PRK00164 moaA molybdenum cofac 23.4 8.2E+02 0.018 25.1 13.1 151 149-324 52-219 (331)
208 PF09889 DUF2116: Uncharacteri 23.2 1.5E+02 0.0032 24.1 4.2 19 20-38 30-48 (59)
209 PRK08208 coproporphyrinogen II 23.1 2.4E+02 0.0053 30.5 7.2 23 235-257 208-230 (430)
210 PRK13813 orotidine 5'-phosphat 23.0 4.1E+02 0.0089 25.5 8.1 71 156-253 74-144 (215)
211 PRK15206 long polar fimbrial p 22.9 71 0.0015 34.4 3.0 33 25-57 1-34 (359)
212 cd06843 PLPDE_III_PvsE_like Ty 22.7 6.7E+02 0.015 26.3 10.2 87 200-300 162-251 (377)
213 COG2342 Predicted extracellula 22.7 4.5E+02 0.0097 27.9 8.5 121 153-283 130-270 (300)
214 cd06810 PLPDE_III_ODC_DapDC_li 22.7 8.6E+02 0.019 25.1 11.6 96 154-258 153-251 (368)
215 PRK11858 aksA trans-homoaconit 22.5 4.4E+02 0.0096 28.2 8.9 59 239-299 79-137 (378)
216 smart00513 SAP Putative DNA-bi 22.4 1.8E+02 0.004 20.5 4.1 31 468-500 2-33 (35)
217 TIGR03572 WbuZ glycosyl amidat 22.4 5.4E+02 0.012 25.0 8.8 75 137-254 147-226 (232)
218 PRK14837 undecaprenyl pyrophos 22.1 8.5E+02 0.018 24.8 12.1 95 150-260 38-136 (230)
219 PRK05354 arginine decarboxylas 22.0 4.5E+02 0.0098 30.5 9.3 129 280-432 183-328 (634)
220 cd02931 ER_like_FMN Enoate red 22.0 8.3E+02 0.018 26.2 10.8 104 95-198 76-215 (382)
221 PF02985 HEAT: HEAT repeat; I 21.8 95 0.0021 21.1 2.5 20 222-241 9-28 (31)
222 TIGR00587 nfo apurinic endonuc 21.5 3E+02 0.0064 27.7 7.0 59 144-207 83-143 (274)
223 PRK05301 pyrroloquinoline quin 21.2 4.8E+02 0.01 27.4 8.7 81 155-254 107-188 (378)
224 TIGR03581 EF_0839 conserved hy 21.0 4.6E+02 0.01 26.9 8.0 81 220-327 124-204 (236)
225 PF10566 Glyco_hydro_97: Glyco 20.7 4.9E+02 0.011 27.1 8.4 171 143-370 30-217 (273)
226 cd02932 OYE_YqiM_FMN Old yello 20.7 9.6E+02 0.021 24.9 12.4 55 144-198 149-218 (336)
227 PLN02849 beta-glucosidase 20.2 1.3E+02 0.0027 33.8 4.3 100 91-208 77-184 (503)
228 cd02929 TMADH_HD_FMN Trimethyl 20.2 6.5E+02 0.014 26.8 9.5 55 144-198 145-214 (370)
229 PRK05731 thiamine monophosphat 20.0 3.6E+02 0.0078 27.6 7.4 79 125-210 43-123 (318)
No 1
>PLN02923 xylose isomerase
Probab=100.00 E-value=2.7e-178 Score=1365.36 Aligned_cols=477 Identities=86% Similarity=1.392 Sum_probs=471.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcccCccCCccccccccCCCCCcccccCCCCCCCccccccCccchhcCCc
Q 037393 26 MEAQKILLLLLLCLNLVSSLVIAGAPPTCAANLDSKCADSDEWKGEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKK 105 (503)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~ 105 (503)
||++. |+++|||.++|+++..+++|++||++++.+|++.++|+++||++|+||+||||+|+||||||||||+|+|+|||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~yF~~i~kI~yeG~~s~nplaf~~Ynp~evv~GK~ 79 (478)
T PLN02923 1 MKGGS-ILLLLLCALLCLSGVIAAQPPTCPADLGSKCSDSDEWEGEFFPGIPKIKYEGPSSKNPLAYKWYNAEEEILGKK 79 (478)
T ss_pred CCcch-hhHHHHHHHHHHHHHHhcCCCCCchhhcccccccHHHHHHhcCCCCceeeeCCCCCCCccccccCchhhcCCcc
Confidence 67777 88888999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHH
Q 037393 106 MKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANA 185 (503)
Q Consensus 106 m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~ 185 (503)
|+|||||||||||||||+|+||||+||+.|||+..+|||++|++|+++|||+|+|||++||||||+|++|+|+|++|+++
T Consensus 80 M~ehlRFav~yWHTf~~~G~DpFG~~T~~rpw~~~~d~m~~A~~k~daaFEf~~kLG~~y~cFHD~Dl~Peg~sl~E~~~ 159 (478)
T PLN02923 80 MKDWMRFSVAFWHTFRGTGGDPFGAPTKYWPWEDGTNSLAMAKRRMRANFEFLKKLGVDRWCFHDRDIAPDGKTLEESNA 159 (478)
T ss_pred HHHhhhhhheeeeecCCCCCCCCCCCcCCCCcccCCCHHHHHHHHHHHHHHHHHHhCCCeEccCccccCCCCCCHHHHHh
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCC
Q 037393 186 NLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSL 264 (503)
Q Consensus 186 nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~ 264 (503)
||++||+++++++ +|||||+|+|+|||+|||||+||+|||||+||++|++|||+|||++++|||++||||||||||+|+
T Consensus 160 nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~GAaTspd~dV~ayAaaqvk~ald~t~eLGgenYVfWGGREGyetl 239 (478)
T PLN02923 160 NLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMHGAATSSEVGVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQTL 239 (478)
T ss_pred hHHHHHHHHHHHhHhhCceeeeeccccccCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCccchhhh
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCC
Q 037393 265 LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGH 344 (503)
Q Consensus 265 ~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~ 344 (503)
+|||++++++|++++|+|+++|+++|||+++|+|||||+|||+|||+||++|+|+||+++|+++.||||||+||++||||
T Consensus 240 lntD~k~e~d~~a~fl~ma~dY~~~iGf~g~flIEPKP~EPtkHqYd~d~at~laFL~~~gl~~~fklNiE~nHatLAGh 319 (478)
T PLN02923 240 LNTDMERELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIDEFKLNIECNHATLSGH 319 (478)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecCCCCCCCCCccCccHHHHHHHHHHhCChhhcccccchhhHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHH
Q 037393 345 SCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHI 424 (503)
Q Consensus 345 n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i 424 (503)
||+|++++|+++|+|||||+|+||+|+||||||||+|+++++++||+||++||+++||+|||+|+||+|+|+||+|++||
T Consensus 320 tf~Hela~A~~~G~LgSIDaN~GD~q~GwdtDQfp~d~~e~t~~m~eiL~~GG~~~Gg~nFDaK~rR~S~d~eDlf~aHI 399 (478)
T PLN02923 320 SCHHELETARINGLLGNIDANTGDAQTGWDTDQFLTDIAEATMVMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHI 399 (478)
T ss_pred CcHHHHHHHHHcCCeeeeeCCCCCcccCcccccCCccHHHHHHHHHHHHHhCCCCCCCCCcCCCCCcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcCCCCHHHHHHHHHHhCCCCCCCchhHHHHHHhhhcC
Q 037393 425 VGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 425 ~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g~~~~~~l~~~a~~~~~~~~~sg~qe~~e~~~n~~~ 503 (503)
++||+|||+|++|++|+++|.|++++++||+||++|+|++|++|++||++|++||+++++|+++|||||+||++||+||
T Consensus 400 ~gMD~~A~gl~~Aa~l~ed~~l~~~~~~RYas~~~g~G~~i~~G~~~l~~l~~~a~~~~~~~~~SGrqE~le~~~N~y~ 478 (478)
T PLN02923 400 SGMDTMARGLRNAAKLLEEGSLPELVRKRYASFDSELGAQIEAGKADFEELEKKALEWGEPKVPSAKQELAEMIFQSAL 478 (478)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHhccccchhchHHHcCcCCHHHHHHHHHhcCCCCCCcchHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999997
No 2
>PRK12465 xylose isomerase; Provisional
Probab=100.00 E-value=2.8e-166 Score=1276.47 Aligned_cols=433 Identities=54% Similarity=0.912 Sum_probs=430.3
Q ss_pred cccCCCCCcccccCCCCCCCccccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q 037393 70 GEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKR 149 (503)
Q Consensus 70 ~~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~ 149 (503)
++||++|+||+||||+|+||||||||||+|+|+||||+|||||||||||||||+|+||||+||+.|||+..+|||++||+
T Consensus 10 ~~~f~~i~~i~yeG~~s~nplaf~~Y~~~~~v~gK~M~ehlrFav~yWHtf~~~G~DpFG~~T~~rpw~~~~~~~~~Ak~ 89 (445)
T PRK12465 10 KEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHLRFAVAYWHSFCGNGADPFGPGTRAYPWDVGNTALARAEA 89 (445)
T ss_pred HhhcCCCCceeeeCCCCCCCccccccCchhhcCCccHHHhhceeeeeeecCCCCCCCCCCCccCCCCcccCCCHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHH
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVA 228 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~ 228 (503)
|+|+|||+|+|||++||||||+|++|+|+|++|+++||++||+++|+++ +|||||+|+|+|||+|||||+||+|||||+
T Consensus 90 k~daaFEf~~kLG~~~~~FHD~D~~Peg~s~~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~GA~TnPD~~ 169 (445)
T PRK12465 90 KSDAAFEFFTKLGVPYYCFHDIDLAPDADDIGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMNGASTNPDFN 169 (445)
T ss_pred HHHHHHHHHHHhCCCeeeccccccCCCCCCHHHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccCCcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCC
Q 037393 229 VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKH 308 (503)
Q Consensus 229 VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h 308 (503)
||++|++|+|+|||++++|||++|||||||||||+++++|++++++|++++++++++|++++||+++|+|||||+|||+|
T Consensus 170 Vra~A~~qvk~alD~~~eLGgenyV~WGGREGye~l~ntd~~~e~d~~a~fl~ma~dY~~~iGf~g~f~IEPKP~EPr~h 249 (445)
T PRK12465 170 VVARAAVQVKAAIDATVELGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIEPKPMEPMKH 249 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEECCCccchhhhhhhhHHHHHHHHHHHHHHHHHHhHhcCCCceEEeccCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHH
Q 037393 309 QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSI 388 (503)
Q Consensus 309 ~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~ 388 (503)
||+||++|+++||+++|++++||||||+||++||||||+|++++|+++|||||||+|+||+|+||||||||+|+++++++
T Consensus 250 qyd~d~aT~l~fL~~~gl~~~~glNiE~nHatlAGh~faHela~A~~~GkLgsID~N~gd~~~GWDtDqFp~~~~e~t~a 329 (445)
T PRK12465 250 QYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPTDLYDTVGA 329 (445)
T ss_pred ccCCcHHHHHHHHHHcCCccccccchhhhhHHHcCCChHHHHHHHHHcCCeeeeECCCCCcccCcccccCCcchHHHHHH
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcC
Q 037393 389 MLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAG 468 (503)
Q Consensus 389 m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g 468 (503)
||+||++||+.+||+|||+|+||+|+|+||+|++||++||+|||+|++|++|+++|.|++++++||+||++|+|++|++|
T Consensus 330 m~~iLk~gG~~~GG~NFDaK~RR~S~d~~Dlf~ahi~gmD~~A~gl~~A~~~~ed~~~~~~~~~RY~s~~~~~g~~i~~g 409 (445)
T PRK12465 330 MLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTSSPLEQWRAERYASFDSGAGADFAAG 409 (445)
T ss_pred HHHHHHhCCcCCCCcCcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcccchhhChHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhCCCCCCCchhHHHHHHhhhcC
Q 037393 469 KADFEMLEKKAMEWGEPKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 469 ~~~~~~l~~~a~~~~~~~~~sg~qe~~e~~~n~~~ 503 (503)
++||++|++||++ ++|+++|||||+||++||+||
T Consensus 410 ~~~l~~l~~~a~~-~~~~~~Sg~qE~~e~~~n~yi 443 (445)
T PRK12465 410 KSTLADLAAHAAG-NAPTQISGRQEAYENLINQYL 443 (445)
T ss_pred cCCHHHHHHHHHc-CCCCCCCchHHHHHHHHHHHh
Confidence 9999999999999 999999999999999999997
No 3
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-163 Score=1221.67 Aligned_cols=435 Identities=54% Similarity=0.951 Sum_probs=431.9
Q ss_pred ccccCCCCCcccccCCCCCCCccccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 037393 69 KGEFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAK 148 (503)
Q Consensus 69 ~~~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~ 148 (503)
.+.||.+|.||+||||+|+||||||||||+|+|+||+|+|||||||||||||||+|+||||.+|+.|||+..+|+|+.||
T Consensus 2 ~~~~F~di~ki~yEG~~StNplAFrhYnp~evv~GK~m~dhLrFavayWHTf~~~G~DpFG~~t~~RPW~~~~~~md~Ak 81 (438)
T COG2115 2 SAGYFGDIAKVRYEGPKSTNPLAFRHYNPDEVVLGKRMEEHLRFAVAYWHTFCWDGADPFGGGTFERPWQQPGDAMDLAK 81 (438)
T ss_pred CccccccchheeecCCCCCCcceeecCCHHHhhccccHHHHHHHHHHHhhhhccCCCCCCCcccccCCccccccHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCH
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEV 227 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~ 227 (503)
+|+|+|||++.|||++||||||.|+.|+|.+++|+.+|+++|||+++++| ++||||+|+|+|+|+|||||+|+.|||||
T Consensus 82 ~kad~aFEff~kL~vpyyCFHD~DvaPeG~~l~E~~~nl~~ivd~~~~kq~~sgvKLLWgTAN~FsnpRym~GaATnp~~ 161 (438)
T COG2115 82 RKADVAFEFFEKLGVPYYCFHDVDVAPEGASLKEYYNNLDEIVDVLAGKQKESGVKLLWGTANLFTNPRYMAGAATNPDP 161 (438)
T ss_pred HHHHHHHHHHHHhCCCeEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHhhCceeeecccccccCccccccccCCCCh
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 228 AVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 228 ~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
+|+++|++|||.|||++++|||+|||||||||||++++|||+++|+++++++++||++|+++|||+++|+|||||+||++
T Consensus 162 dVFa~aAaqVk~~~~~tk~LggENYVlWGGREGYETLLNTDl~~E~d~l~RF~~mvVeyk~kigf~gt~LIEPKPqEPtk 241 (438)
T COG2115 162 DVFAYAAAQVKTAMEATKKLGGENYVLWGGREGYETLLNTDLKRELEQLGRFMQMVVEYKHKIGFKGTFLIEPKPQEPTK 241 (438)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcceEEecCcccHHHHhhchHHHHHHHHHHHHHHHHHHHHhcCCcceEEecCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHH
Q 037393 308 HQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATS 387 (503)
Q Consensus 308 h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~ 387 (503)
|||++||+|+++||+++|+++.||||||.||++||||+|+|++++|+..|+|||||+|+||||+||||||||+|++++++
T Consensus 242 HQYDyDvATvy~FLk~~gLek~~K~NiEanHA~LaGHsFeHEl~~A~~lgifGSiDaNrgd~~lGWDTDqFP~~v~e~tL 321 (438)
T COG2115 242 HQYDYDVATVYGFLKQFGLEKEFKLNIEANHATLAGHSFEHELATARALGIFGSIDANRGDYQLGWDTDQFPNNVEENTL 321 (438)
T ss_pred ccccchHHHHHHHHHHcCchhheeeecccCceecccccHHHHHHHHHHhccccccccCCCCcccCCcccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhc
Q 037393 388 IMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEA 467 (503)
Q Consensus 388 ~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~ 467 (503)
+||+||++||+..||+|||+|+||+|+||+|++++||++||+|||+|++|++|++|+.|++.|++||+||++++|++|++
T Consensus 322 amyeiL~~GGf~~GG~NFDAKvRRqS~d~~DL~~gHI~gMD~~A~gLK~AakmieD~~l~~~i~eRYa~~~~~~gq~il~ 401 (438)
T COG2115 322 AMYEILKAGGFTTGGLNFDAKVRRQSFDPYDLFYGHIGGMDTFARGLKIAAKMIEDGVLSKPIAERYAGWNSELGQQILN 401 (438)
T ss_pred HHHHHHHcCCcCCCCcccchhhhhccCCHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHhhccchHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhC-CCCCCCchhHHHHHHhhhcC
Q 037393 468 GKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 468 g~~~~~~l~~~a~~~~-~~~~~sg~qe~~e~~~n~~~ 503 (503)
|++|||+|++||++++ +|++.|||||+|||+|||||
T Consensus 402 G~~~le~la~~~~~~~~~~~~~Sg~qE~len~vN~Y~ 438 (438)
T COG2115 402 GKTSLEELAAYALEHDLNPEHQSGRQEYLENLVNRYL 438 (438)
T ss_pred CcCCHHHHHHHHHhcCCCCCCCccHHHHHHHHHhccC
Confidence 9999999999999995 99999999999999999997
No 4
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=100.00 E-value=4.1e-162 Score=1249.80 Aligned_cols=432 Identities=66% Similarity=1.090 Sum_probs=429.0
Q ss_pred cCCCCCcccccCCCCCCCccccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q 037393 72 FFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRM 151 (503)
Q Consensus 72 ~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~ 151 (503)
||++|+||+||||+|+||||||||||+|+|+||||+|||||||||||||||+|+||||+||+.|||+..+|||+.|++|+
T Consensus 1 ~f~~i~~i~yeg~~s~np~af~~y~~~~~v~gk~m~~hlrFa~~~Wht~~~~G~DpFG~~T~~rpw~~~~d~~~~a~~k~ 80 (434)
T TIGR02630 1 FFPGIPKIQYEGPDSKNPLAFKYYNPEEVIGGKTMKDHLRFAVAYWHTFCGDGGDPFGDGTADRPWDGGTDPMDKAKAKV 80 (434)
T ss_pred CCCCCCceeecCCCCCCCcccccCCchhhhCCccHHHhhceeeeecccCCCCCCCCCCCccCCCCCccCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHH
Q 037393 152 RANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVY 230 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VR 230 (503)
|+|||+|+|||++||||||+|++|+|+|++|+++||++||+++|+++ +|||||+|+|+|||+||+||+||+|||||+||
T Consensus 81 daaFef~~kLg~~~~~FHD~D~~peg~~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~TnPd~~Vr 160 (434)
T TIGR02630 81 DAAFEFFEKLGVPYYCFHDRDIAPEGASLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMHGAATSPDADVF 160 (434)
T ss_pred HHHHHHHHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccCCcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCc
Q 037393 231 AYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQY 310 (503)
Q Consensus 231 a~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y 310 (503)
++|++|||+|||+|++|||++||||||||||||++|+||+++|++++++|+++++|++++||+++|+|||||+|||+|||
T Consensus 161 a~A~~qvk~alD~~~eLGgenyV~WgGREGye~~lntD~~~e~d~~~~~l~~~~dYa~~iGf~~~f~IEPKP~EPr~hqy 240 (434)
T TIGR02630 161 AYAAAQVKKALEVTKKLGGENYVFWGGREGYETLLNTDMKRELDHLARFLHMAVDYAKKIGFKGQFLIEPKPKEPTKHQY 240 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEECCCccccccccccCHHHHHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHH
Q 037393 311 DWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIML 390 (503)
Q Consensus 311 ~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~ 390 (503)
+||+||+|+||+++|++++||||||+||++||||||+|++++|+++|||||||+|+||+|+|||||||++++++++++|+
T Consensus 241 d~d~at~l~fl~~~gl~~~~gvNiE~~Ha~lAGh~~ahela~A~~~G~LgsId~N~Gd~~~GwDtDqF~~~v~~~tl~~~ 320 (434)
T TIGR02630 241 DFDAATVYAFLKKYGLDKDFKLNIEANHATLAGHTFEHELRVARDNGLLGSIDANQGDLLLGWDTDQFPTDVYETTLAMY 320 (434)
T ss_pred cccHHHHHHHHHHcCChhhcccChhhhHHHHcCCChHHHHHHHHHcCCeeeeeCCCCCcccCCcCCcCccchHHHHHHHH
Confidence 99999999999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcCCC
Q 037393 391 SVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKA 470 (503)
Q Consensus 391 ~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g~~ 470 (503)
++|++||+++|++|||+||||+|+|+||+|++||+|||+|||+|++|++|++++.|++++++||+||++|+|++|++|++
T Consensus 321 ~iLk~gG~~~Gg~nFDak~rR~s~~~eDl~~ahi~gmd~~ar~l~~a~kl~~~~~l~~~~~~ry~s~~~~~g~~i~~g~~ 400 (434)
T TIGR02630 321 EVLKNGGFTTGGLNFDAKVRRESFDPEDLFIAHIAGMDTFARGLKVAAKLLEDGFLDKFVAERYSSFNSGIGADIEAGKT 400 (434)
T ss_pred HHHHHcCCCCCCcccccCCCcCCCCccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhcccchhhhHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhCC-CCCCCchhHHHHHHhhhcC
Q 037393 471 DFEMLEKKAMEWGE-PKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 471 ~~~~l~~~a~~~~~-~~~~sg~qe~~e~~~n~~~ 503 (503)
||++|++||+++++ |+++|||||+||++||+||
T Consensus 401 ~l~~l~~~a~~~~~~~~~~sg~qe~~e~~~n~yi 434 (434)
T TIGR02630 401 DLEDLEKYALEKGDDPENKSGRQEYLESLINRYL 434 (434)
T ss_pred CHHHHHHHHHhcCCCCCCCCchHHHHHHHHHhhC
Confidence 99999999999997 9999999999999999997
No 5
>PRK05474 xylose isomerase; Provisional
Probab=100.00 E-value=5.1e-161 Score=1245.65 Aligned_cols=433 Identities=59% Similarity=0.990 Sum_probs=429.6
Q ss_pred ccCCCCCcccccCCCCCCCccccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q 037393 71 EFFPGIPKIKYEGPSSKNHLAFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRR 150 (503)
Q Consensus 71 ~~f~~i~~i~yeg~~s~n~~~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r 150 (503)
+||++|+||+||||+|+||||||||||+|+|+||||+|||||||||||||||+|+||||++|+.|||+..+|||+.|++|
T Consensus 1 ~~f~~i~~i~yeg~~s~np~af~~y~~~~~v~gk~m~~~lrFa~~~Wht~~~~G~DpFG~~T~~rpw~~~~d~~~~a~~k 80 (437)
T PRK05474 1 EYFPDIDKIRYEGPESDNPLAFRHYNPDEVVLGKTMEEHLRFAVAYWHTFCWPGADPFGGGTFQRPWDQPGDALDLAKAK 80 (437)
T ss_pred CCCCCCCceeecCCCCCCCcccccCCchhhcCCccHHHhhceeeeecccCCCCCCCCCCCccccCCCcCCCCHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred HHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHH
Q 037393 151 MRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAV 229 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~V 229 (503)
+++|||+|+|||++||||||+|++|+|+|++|+++||++||+++|+++ +|||||+|+|+|||+||+||+||+|||||+|
T Consensus 81 ~d~afe~~~kLg~~~~~FHD~D~~peg~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~GA~Tnpd~~V 160 (437)
T PRK05474 81 ADAAFEFFTKLGVPYYCFHDVDVAPEGASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMAGAATNPDPDV 160 (437)
T ss_pred HHHHHHHHHHhCCCeeccCccccCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccCCcCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCC
Q 037393 230 YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ 309 (503)
Q Consensus 230 Ra~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~ 309 (503)
|++|++|||+|||+|++|||++||||||||||||++||||+++|++++++|+++++|++++||+++|+|||||+|||+||
T Consensus 161 ra~A~~qvk~alD~~~eLGge~yV~WgGREGye~~~ntD~~~e~d~~~~~l~~v~dYa~~iGf~~~f~IEPKP~EPr~hq 240 (437)
T PRK05474 161 FAYAAAQVKTALDATKRLGGENYVFWGGREGYETLLNTDLKREREQLARFLQMVVDYKHKIGFKGTFLIEPKPQEPTKHQ 240 (437)
T ss_pred HHHHHHHHHHHHHHHHHhCCCeEEECCCcccccchhhcCHHHHHHHHHHHHHHHHHHhhhcCCCceEEeccCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHH
Q 037393 310 YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIM 389 (503)
Q Consensus 310 y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m 389 (503)
|+||++|+|+||+++|++++||||||+||++||||||+|++++|+++|+|||||+|+||+|+||||||||+++++++++|
T Consensus 241 yd~d~at~l~fl~~~gl~~~~gvNiE~~Ha~mAGh~~ahela~A~~~G~LgsID~N~Gd~q~GwDtDqf~~~v~~t~~~m 320 (437)
T PRK05474 241 YDYDAATVYGFLKQYGLEKEFKLNIEANHATLAGHTFEHELAVARALGILGSIDANRGDYQLGWDTDQFPNNVYETTLAM 320 (437)
T ss_pred ccccHHHHHHHHHHhCCccccccchhhhHHHHcCCChHHHHHHHHHcCCeeeeeCCCCCcccCCCcCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHHhhccCCChhhhhhHhcCC
Q 037393 390 LSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGK 469 (503)
Q Consensus 390 ~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa~l~~~~~l~~~~~~Ry~~~~~~~g~~~~~g~ 469 (503)
|+||++||+++|++|||+||||+|+||+|+|++||+|||+|++++++|++|+++++|++++++||+||++++|++|++|+
T Consensus 321 ~~iLk~gG~~~Gg~nFDak~rR~s~d~~dl~~~~~~~md~~a~~l~~A~~l~~d~~l~~~~~~rya~~~~~~g~~i~~g~ 400 (437)
T PRK05474 321 YEILKAGGFTTGGLNFDAKVRRQSTDPEDLFYAHIGGMDTFARGLKVAAKMIEDGVLEKLVAERYASWDSGLGQDILAGK 400 (437)
T ss_pred HHHHHhCCCCCCCcccccCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHhhhhhhhhHHHHHHHcCc
Confidence 99999999989999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCC-CCCCCchhHHHHHHhhhcC
Q 037393 470 ADFEMLEKKAMEWGE-PKVPSAKQELAEMIFQSAI 503 (503)
Q Consensus 470 ~~~~~l~~~a~~~~~-~~~~sg~qe~~e~~~n~~~ 503 (503)
+||++|++||+++++ |+++|||||+||++||+||
T Consensus 401 ~~l~~l~~~~~~~~~~~~~~sg~qe~~e~~~n~~i 435 (437)
T PRK05474 401 LSLEDLAAYALAHGLNPQHQSGRQELLENLVNRYI 435 (437)
T ss_pred CCHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHh
Confidence 999999999999997 7999999999999999997
No 6
>PRK12677 xylose isomerase; Provisional
Probab=100.00 E-value=2.2e-65 Score=531.65 Aligned_cols=353 Identities=29% Similarity=0.430 Sum_probs=315.1
Q ss_pred ccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHH
Q 037393 105 KMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEAN 184 (503)
Q Consensus 105 ~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~ 184 (503)
+++++ |||||+| ||+|.|.||||++|+ |+ .++.|.+ +.++++|+++|+||+.|++|++.+..+++
T Consensus 2 ~~~~~-~f~~~~w-~~~~~~~~~~g~~~~--~~---~~~~E~v--------~~~a~~Gf~gVElh~~~l~p~~~~~~~~~ 66 (384)
T PRK12677 2 PTPED-KFSFGLW-TVGWQGRDPFGDATR--PP---LDPVEAV--------HKLAELGAYGVTFHDDDLVPFGATDAERD 66 (384)
T ss_pred CCccc-eeEEEEe-eccCCCCCCCCCCCC--CC---CCHHHHH--------HHHHHhCCCEEEecccccCCCCCChhhhH
Confidence 56675 9999999 999999999999998 55 3555544 58999999999999999999999988887
Q ss_pred HhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCC
Q 037393 185 ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSL 264 (503)
Q Consensus 185 ~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~ 264 (503)
+++++ +.+.+.++||++.++|+|+|.||.|++|++||||+++|++|+++++++||+|++||++.|++|+|++|++|+
T Consensus 67 ~~~~~---lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~ 143 (384)
T PRK12677 67 RIIKR---FKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYD 143 (384)
T ss_pred HHHHH---HHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCc
Confidence 77776 233444999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCC
Q 037393 265 LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGH 344 (503)
Q Consensus 265 ~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~ 344 (503)
++.|+.+.|++++++|+.+++|+++.|++++|+|||||+||+.+.+++++++++.+++++|.++.+|||+|+||++|+|+
T Consensus 144 ~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEpkp~ep~~~~~l~t~~~al~li~~lg~~~~vGv~lD~gH~~m~g~ 223 (384)
T PRK12677 144 AAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEPKPNEPRGDILLPTVGHALAFIATLEHPEMVGLNPEVGHEQMAGL 223 (384)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEccCCCCCCCCeeeCCHHHHHHHHHHhCCCccEEEeeechHHHhcCC
Confidence 99999999999999999999999999988899999999999999999999999999999999988999999999999999
Q ss_pred CHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCC--cCCHHHHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHH
Q 037393 345 SCHHDIETARLNGLLGNIDANTGDPQVGWDTDQF--LTDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIA 422 (503)
Q Consensus 345 n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf--~~~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a 422 (503)
||+|.++.++..++|+|||+||+.+ ..||.|.- ..++..++.++. +|+..| |+|+++||++|.|+ .+.++++++
T Consensus 224 n~~~~i~~~l~~~kL~HvHlnD~~~-g~~D~dL~~G~G~~~~~~~~l~-~L~~~g-Y~G~~~~D~~p~rt-~~~~~v~~~ 299 (384)
T PRK12677 224 NFTHGIAQALWAGKLFHIDLNGQRG-IKYDQDLRFGHGDLKSAFFLVD-LLENGG-YDGPRHFDYKPSRT-EDEDGVWAS 299 (384)
T ss_pred CHHHHHHHHHhCCcEEEEEecCCCC-CCCCCCCCCCCCchhhHHHHHH-HHHHcC-CCCceeEEeeCCCC-CcchHHHHH
Confidence 9999999999999999999999432 12444432 248888855565 678777 48999999999998 889999999
Q ss_pred HHHHHHHHHHHHHHHHhh----------------------hcCC-ChhHHHHhh--ccCCChhhhhhHhcCCCCHHHHHH
Q 037393 423 HIVGMDTVARGLRTAAKL----------------------IEDG-SLPELVRKR--YQSFDSEIGQKIEAGKADFEMLEK 477 (503)
Q Consensus 423 ~i~~md~~ar~l~~Aa~l----------------------~~~~-~l~~~~~~R--y~~~~~~~g~~~~~g~~~~~~l~~ 477 (503)
+.+||++|.+..++|+++ +..| .+++++++| |++||... ..+..+.|+.|.|
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 376 (384)
T PRK12677 300 AAACMRTYLILKEKAAAFRADPEVQEALAAARVDELAQPTLAAGETYADLLADRSAFEDFDADA---AAERGYGFERLDQ 376 (384)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhCccccccCcCCCCccHHHHHhhhhhhhccCHHH---HhhcCcchhhHHH
Confidence 999999999999988665 4455 488899998 88999987 6689999999999
Q ss_pred HHHHh
Q 037393 478 KAMEW 482 (503)
Q Consensus 478 ~a~~~ 482 (503)
+|++|
T Consensus 377 ~~~~~ 381 (384)
T PRK12677 377 LALEH 381 (384)
T ss_pred HHHHH
Confidence 99987
No 7
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=100.00 E-value=7.7e-63 Score=512.29 Aligned_cols=347 Identities=30% Similarity=0.435 Sum_probs=313.2
Q ss_pred ccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHH
Q 037393 109 WMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLD 188 (503)
Q Consensus 109 ~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~ 188 (503)
-.|||||+| ||+|+|+||||++|+ || .++.+.. +.++++|+++|+||++|++|++.+..++..+++
T Consensus 6 ~~~f~~~~w-~~~~~~~~~~g~~~~--~~---~~~~e~i--------~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~ 71 (382)
T TIGR02631 6 EDRFTFGLW-TVGWVGRDPFGDATR--TA---LDPVEAV--------HKLAELGAYGVTFHDDDLIPFGAPPQERDQIVR 71 (382)
T ss_pred CCceEEEee-ccCCCCCCCCCCCCC--CC---cCHHHHH--------HHHHHhCCCEEEecccccCCCCCChhHHHHHHH
Confidence 369999999 999999999999999 77 4666655 489999999999999999999999988877777
Q ss_pred HHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCC
Q 037393 189 EVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTD 268 (503)
Q Consensus 189 ~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD 268 (503)
+ ..+.+.++|+++.++|+|+|++|.|+.|++||||+++|++|+++++++||+|++|||+.+++|+|++|+++..++|
T Consensus 72 ~---lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d 148 (382)
T TIGR02631 72 R---FKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKD 148 (382)
T ss_pred H---HHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccC
Confidence 5 2334449999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHH
Q 037393 269 MGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHH 348 (503)
Q Consensus 269 ~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah 348 (503)
+.++|++++++|+.+++|+++.|++++|+|||||+||+...+++++++++.+++++|.|+.+|||+|++|+.|+|+|+++
T Consensus 149 ~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~~pn~vgl~lDvgH~~~~g~n~~~ 228 (382)
T TIGR02631 149 VRAALDRMREALNLLAAYAEDQGYGLRFALEPKPNEPRGDILLPTVGHALAFIETLERPELFGLNPETGHEQMAGLNFTH 228 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCCCCCcceecCCHHHHHHHHHHcCCccceeEEEechhHhhcCCCHHH
Confidence 99999999999999999999999888999999999999999999999999999999999878999999999999999999
Q ss_pred HHHHHHHcCCeeEEecCCCCCCCCCCCCCCc----CCHHHHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHH
Q 037393 349 DIETARLNGLLGNIDANTGDPQVGWDTDQFL----TDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHI 424 (503)
Q Consensus 349 ~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~----~~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i 424 (503)
.++.+++.++|+|||+|| +.|..+||.+ .++..++.++ ..|+..| |+|+++||++|.|+ .++++++.++.
T Consensus 229 ~i~~~l~~~kl~HvhlnD---~~g~~~D~hL~~G~G~l~~~~~~l-~~L~~~G-Y~G~i~~d~~P~r~-~~~~~~~~~~~ 302 (382)
T TIGR02631 229 GIAQALWAGKLFHIDLNG---QRGIKFDQDLRFGHGDLKAAFFLV-DLLESGG-YQGPRHFDYKPSRT-EDYDGVWASAK 302 (382)
T ss_pred HHHHHHhCCCEEEEecCC---CCCCCccCCcCCCCCCHHHHHHHH-HHHHHCC-CCCceeEEecCCcC-CchHHHHHHHH
Confidence 999999999999999999 5555556532 3788775455 5678777 48999999999999 89999999999
Q ss_pred HHHHHHHHHHHHHHhh----------------------hcCCChhHHHHhh--ccCCChhhhhhHhcCCCCHHHHHHHHH
Q 037393 425 VGMDTVARGLRTAAKL----------------------IEDGSLPELVRKR--YQSFDSEIGQKIEAGKADFEMLEKKAM 480 (503)
Q Consensus 425 ~~md~~ar~l~~Aa~l----------------------~~~~~l~~~~~~R--y~~~~~~~g~~~~~g~~~~~~l~~~a~ 480 (503)
+||++|.+..+.++++ +.+| +++++++| |++||... ..+..+.|+.|.|+|+
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 378 (382)
T TIGR02631 303 GCMRMYLILKERAEAFRADPEVQEALAASYVDELAAPTLNGG-YADLLADRSAFAEFDAEA---AAARGYAFERLDQLAI 378 (382)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHcCcccccccccccc-HHHHhhhhhhccccCHHH---HhhcCcchhhHHHHHH
Confidence 9999999988888665 4446 88889999 88999887 5688999999999999
Q ss_pred Hh
Q 037393 481 EW 482 (503)
Q Consensus 481 ~~ 482 (503)
+|
T Consensus 379 ~~ 380 (382)
T TIGR02631 379 EH 380 (382)
T ss_pred hh
Confidence 87
No 8
>TIGR02629 L_rham_iso_rhiz L-rhamnose catabolism isomerase, Pseudomonas stutzeri subtype. Members of this family are isomerases in the pathway of L-rhamnose catabolism as found in Pseudomonas stutzeri and in a number of the Rhizobiales. This family differs from the L-rhamnose isomerases of Escherichia coli (see TIGR01748). This enzyme catalyzes the isomerization step in rhamnose catabolism. Genetic evidence in Rhizobium leguminosarum bv. trifolii suggests phosphorylation occurs first, then isomerization of the the phosphorylated sugar, but characterization of the recombinant enzyme from Pseudomonas stutzeri does show L-rhamnose isomerase activity. The name given is deliberately vague because the relative order of phosphorylation and isomerization is unclear.
Probab=100.00 E-value=4.8e-47 Score=394.23 Aligned_cols=291 Identities=15% Similarity=0.098 Sum_probs=240.0
Q ss_pred cceeeeeccccCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCceecccCCCCCCCCC-CHHHHHH
Q 037393 110 MRFSVAFWHTFRGTGSDPFG--VPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL-GVDFWCFHDRDIAPDGE-TLKEANA 185 (503)
Q Consensus 110 lrFsv~~Wht~~~~g~DpFG--~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kL-G~~~~~fHD~Dl~P~g~-t~~e~~~ 185 (503)
++.|+--| -+...|.. || +|. ..+.++.|... .++++ ++.+.+...+.++|... +.++
T Consensus 41 ~~is~p~W-~~~~gGtr-fg~fpg~-----g~~R~~~E~i~--------D~~~v~~Lt~~~~~v~LH~~wd~vD~~e--- 102 (412)
T TIGR02629 41 FFVAVPSW-GVGTGGTR-FARFPGT-----GEPRGIFDKLE--------DCAVIQQLTRATPNVSLHIPWDKADPKE--- 102 (412)
T ss_pred Cceeeecc-ccCCCCcc-cCcCCCC-----CCCCCHHHHHH--------HHHHHHhhcCCCCCccccCCCCcCCHHH---
Confidence 57788888 55555555 77 221 11245555433 33333 56666666677777632 3332
Q ss_pred hHHHHHHHHHHHh-cCCceeeeeccCCCCCc-----cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCc
Q 037393 186 NLDEVVALAKELQ-GTKVRPLWGTAQLFSHP-----RYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGRE 259 (503)
Q Consensus 186 nl~~i~~~lk~l~-~tGvkl~~~tanlF~~p-----rfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrE 259 (503)
+++.+ ++||++..++||+|+|| .||.|++|||||+||++|++++|+|+|++++||++.+++|.| |
T Consensus 103 --------lk~~A~e~GL~lda~Npn~Fs~~~~q~~~yk~GSLtnPD~~VR~~AIeh~~~~i~Ig~elGs~~v~IW~g-D 173 (412)
T TIGR02629 103 --------LKARGSALGLGFDAMNSNTFSDAPGQAHSYKFGSLSHTDAATRRQAVEHNLECIEIGKALGSKALTVWIG-D 173 (412)
T ss_pred --------HHHHHHHcCCccceeccccccCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECC-C
Confidence 34555 99999999999999765 799999999999999999999999999999999999999999 9
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCcc-ccHHHHHHHHHHhCCCCCceeeccccc
Q 037393 260 GYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYD-WDAATAANFLRKYGLINDFKLNIECNH 338 (503)
Q Consensus 260 Gydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~-~dvgt~l~fl~~~gl~~~~gVniD~gH 338 (503)
||+||+|.|+++.|++++++|++++++.++ + .+++|||||+||+..+|+ +||+++++.++++|.++ + |++|+||
T Consensus 174 G~~yP~Q~~~~~~~~rl~esL~eI~~~~pd-~--~k~~iEyKpfEP~~ys~~v~d~g~~yl~~~~lg~~~-~-vlLD~GH 248 (412)
T TIGR02629 174 GSNFPGQSNFTRAFERYLDAMKAVYAGLPD-D--WKLFTEHKMYEPAFYSTVVQDWGTNYLIAQELGPKA-F-CLVDLGH 248 (412)
T ss_pred CCCCcCccchHHHHHHHHHHHHHHHhhCCc-c--ceEEEecccCCCceeeeechHHHHHHHHHHHhCCCc-E-EEeecCC
Confidence 999999999999999999999999999776 3 499999999999998887 99999999999999876 4 9999999
Q ss_pred ccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCC--cCCHHHHHHHHHHHHHhCCC----CCCcccccccCcCC
Q 037393 339 ATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQF--LTDIGEATSIMLSVIKNGGL----APGGFNFDAKLRRE 412 (503)
Q Consensus 339 a~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf--~~~~~e~~~~m~~iLk~gG~----~~Ggi~FDakprR~ 412 (503)
+..++|++..++.++..|+|||+|+||..| | |+|.. ++||++++++|++|++.++. ++|.+.||++|.++
T Consensus 249 -~~P~~nie~ivs~ll~~gkL~GfHfNd~~y--g-DDdL~vGSv~p~qlf~i~~el~~~~~~~~~~~~~~~m~Dq~hn~e 324 (412)
T TIGR02629 249 -HAPNVNIEMIVARLIQFKKLGGFHFNDSKY--G-DDDLDAGSIDPYRLFLVFNELVDAEARGAKGFDPAHMLDQSHNVT 324 (412)
T ss_pred -CCcccCHHHHHHHHHhhCCcceeecCCCCc--c-cCCcceecCCHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCC
Confidence 589999999999999999999999999655 3 44433 46999999999999998422 57899999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH
Q 037393 413 STDVEDLFIAHIVGMDTVARGLRTA 437 (503)
Q Consensus 413 s~d~edl~~a~i~~md~~ar~l~~A 437 (503)
..+|++.++....++.|++++++.
T Consensus 325 -dpie~~~~sv~~~~~~~a~al~vd 348 (412)
T TIGR02629 325 -DPIESLMNSANEVRRAYAQALLVD 348 (412)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888888888877754
No 9
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=100.00 E-value=9.2e-45 Score=376.71 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=227.1
Q ss_pred ccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh--CCceecccCCCCCCCCCCHHHHHHh
Q 037393 109 WMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL--GVDFWCFHDRDIAPDGETLKEANAN 186 (503)
Q Consensus 109 ~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kL--G~~~~~fHD~Dl~P~g~t~~e~~~n 186 (503)
.++|+++.| .|...|+ .|++ + .+...+.++.|... ++ +...+| +-+.|.+|-+. |...+
T Consensus 10 ~~~~~~~~w-~~~~~~t-Rf~~--f-~~~g~~r~~~e~~~----d~-~~v~~L~~~~~~v~lH~~~--d~~~d------- 70 (378)
T TIGR02635 10 ALKIETPSW-AYGNSGT-RFKV--F-HQEGAARNVFEKIE----DA-ALVHRLTGICPTVALHIPW--DRVED------- 70 (378)
T ss_pred hcEeecccc-ccCCCCc-cccc--C-CCCCCCCCHHHHHH----HH-HHHHhhcCCCCceeeccCC--ccccC-------
Confidence 479999999 6554433 3653 1 12223345555332 21 233334 23778888443 22222
Q ss_pred HHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCC
Q 037393 187 LDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLL 265 (503)
Q Consensus 187 l~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~ 265 (503)
+++ ++++. ++|+++..+|||+|+||.|+.|+||||||+||++|++++|+|||+|++||++.+++|++ ||++|++
T Consensus 71 ~~~----~~~~l~~~GL~v~~i~p~~f~~~~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~-DG~~~~g 145 (378)
T TIGR02635 71 YEE----LARYAEELGLKIGAINPNLFQDDDYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLA-DGTNYPG 145 (378)
T ss_pred HHH----HHHHHHHcCCceeeeeCCccCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecC-CcCcCCc
Confidence 333 33444 99999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCc-cccHHHHHHHHHHhCCCCCceeecccccccccCC
Q 037393 266 NTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQY-DWDAATAANFLRKYGLINDFKLNIECNHATLSGH 344 (503)
Q Consensus 266 qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y-~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~ 344 (503)
|.|++++|++++++|+++++++. .+++++|||||+||+...- .+|+++++++++++|.+ ++||+|+||. ++|+
T Consensus 146 ~~~~~~a~~rl~esL~eI~~~~~---~~v~~~iE~Kp~Ep~~y~t~~~~~~~~l~l~~~lg~~--~~v~lD~GH~-~~~E 219 (378)
T TIGR02635 146 QDDFRSRKDRLEESLAEVYEHLG---ADMRLLIEYKFFEPAFYHTDIPDWGTAYALSEKLGER--ALVLVDTGHH-AQGT 219 (378)
T ss_pred ccCHHHHHHHHHHHHHHHHHhCc---CCCEEEEecCCCCCceeeecCCcHHHHHHHHHhhCCC--ceEEeecCcc-CCCC
Confidence 99999999999999999998753 3579999999999997443 69999999999999965 7999999996 5899
Q ss_pred CHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCC--cCCHHHHHHHHHHHHHhCCCCCC-------cccccccCcCCCCC
Q 037393 345 SCHHDIETARLNGLLGNIDANTGDPQVGWDTDQF--LTDIGEATSIMLSVIKNGGLAPG-------GFNFDAKLRRESTD 415 (503)
Q Consensus 345 n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf--~~~~~e~~~~m~~iLk~gG~~~G-------gi~FDakprR~s~d 415 (503)
|+++.++++++.|+|+|||+|++. .||.|-. ..|+.+++.++++|++.++ .| .+.||+||.++ ..
T Consensus 220 nia~~~a~l~~~~kL~hiH~nd~~---~~Ddd~~vG~~d~~e~~~il~el~~~~~--~~~~~~~~~~~~lD~f~~~~-~~ 293 (378)
T TIGR02635 220 NIEFIVATLLDEKKLGGFHFNSRK---YADDDLTVGAINPYELFLIFKEIVRAGR--DPEDSASDVALMLDQCHNLE-PK 293 (378)
T ss_pred CHHHHHHHHhhCCceeEEEecCCC---cccCCCceecCCHHHHHHHHHHHHhcCC--CCcccccceEEEEecCcccc-cc
Confidence 999999999999999999999954 4775543 3599999999999987764 45 78899999998 55
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 037393 416 VEDLFIAHIVGMDTVARGLR 435 (503)
Q Consensus 416 ~edl~~a~i~~md~~ar~l~ 435 (503)
+++++++..+.+++++++++
T Consensus 294 i~a~~~~~~~~~~~~~~All 313 (378)
T TIGR02635 294 IPAMIRSVLNVQELFAKALL 313 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 55555555444444444443
No 10
>COG4952 Predicted sugar isomerase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-33 Score=281.25 Aligned_cols=297 Identities=15% Similarity=0.120 Sum_probs=241.1
Q ss_pred ccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh-C-CceecccCCCCCCCCC--CHHHHH
Q 037393 109 WMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL-G-VDFWCFHDRDIAPDGE--TLKEAN 184 (503)
Q Consensus 109 ~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kL-G-~~~~~fHD~Dl~P~g~--t~~e~~ 184 (503)
-++|++.-| -|+-. ||++--....+.| .....|++++ ..+..| + -+.|.+| +|++. +++
T Consensus 48 e~~vavPSW-gvgtg-------GTRFArFpg~Gep-RniFdkieDc-Avi~qLT~atP~VsLH----IPWDKved~~--- 110 (430)
T COG4952 48 EFKVAVPSW-GVGTG-------GTRFARFPGEGEP-RNIFDKIEDC-AVIHQLTRATPSVSLH----IPWDKVEDPE--- 110 (430)
T ss_pred HHeeecccc-cccCC-------CceeeecCCCCCc-chHHHHHHHH-HHHHHHhcCCCceeee----cChhcccCHH---
Confidence 378999999 32221 2442222122222 2233344443 245555 3 5888888 45442 333
Q ss_pred HhHHHHHHHHHHHh-cCCceeeeeccCCCCCc-----cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCC
Q 037393 185 ANLDEVVALAKELQ-GTKVRPLWGTAQLFSHP-----RYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGR 258 (503)
Q Consensus 185 ~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~p-----rfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGr 258 (503)
.+|+.. +.|+++..+++|+|+|| .||.|+++|||+..|++|++++.+|+||++.+|++.+++|.|
T Consensus 111 --------~Lke~a~~~GL~fdAmNsNtFsDa~~q~~sYKyGSLsh~d~~tR~qAieHnlECveIg~~~GSKaltvWvg- 181 (430)
T COG4952 111 --------RLKEFASALGLGFDAMNSNTFSDAPGQGHSYKYGSLSHTDAATRRQAIEHNLECVEIGKALGSKALTVWVG- 181 (430)
T ss_pred --------HHHHHHHhcCCCccccCcccccCCcccccccccccccCccHHHHHHHHHhhHHHHHHHHhhCcceEEEEec-
Confidence 356666 88999999999999999 999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC-CCccccHHHHHHHHHHhCCCCCceeecccc
Q 037393 259 EGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK-HQYDWDAATAANFLRKYGLINDFKLNIECN 337 (503)
Q Consensus 259 EGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~-h~y~~dvgt~l~fl~~~gl~~~~gVniD~g 337 (503)
||.++|.|.|+.+..+|+.++++.+++. +.-++++++|+|-+||.+ |+.++||||.++..+++| ++.-+.+|.|
T Consensus 182 DGsnfPGQ~nF~r~feRyl~sm~~iY~~---lPaDw~lf~EhKmfEPAFYsTvvqDWGtnYLia~~LG--erA~cLVDLG 256 (430)
T COG4952 182 DGSNFPGQSNFTRAFERYLDSMKAIYAA---LPADWRLFTEHKMFEPAFYSTVVQDWGTNYLIAEELG--ERAFCLVDLG 256 (430)
T ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHh---CchhhhHHHhhhcccchhhhcccccccHHHHHHHHhc--cceEEEEecC
Confidence 9999999999999999999999999986 556799999999999998 888999999999999999 6689999999
Q ss_pred cccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCC--cCCHHHHHHHHHHHHHhCCC-CCC---cccccccCcC
Q 037393 338 HATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQF--LTDIGEATSIMLSVIKNGGL-APG---GFNFDAKLRR 411 (503)
Q Consensus 338 Ha~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf--~~~~~e~~~~m~~iLk~gG~-~~G---gi~FDakprR 411 (503)
| +..+.|++.+|+.++..+|||++|+||.+| -|+|.+ +.|||+.|+++.+|+....- ..| .--||+.++-
T Consensus 257 H-HapntNIEmIVarLiqfkKLGGFHfNdsKY---gDDDLd~gSI~PYrlFLvFnElVdAe~r~~egfdpAhM~DQsHnv 332 (430)
T COG4952 257 H-HAPNTNIEMIVARLIQFKKLGGFHFNDSKY---GDDDLDAGSIDPYRLFLVFNELVDAEYRGAEGFDPAHMLDQSHNV 332 (430)
T ss_pred C-CCCCCCHHHHHHHHHhhccccceecCcccc---ccccccccccCcchhhhhHHHHHhhhhcCcccCChHHhhhhcccc
Confidence 9 899999999999999999999999999887 123333 46999999999999986411 111 2357999988
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037393 412 ESTDVEDLFIAHIVGMDTVARGLRTAAKLI 441 (503)
Q Consensus 412 ~s~d~edl~~a~i~~md~~ar~l~~Aa~l~ 441 (503)
+ ..+|.+++++.-..+.|+++|.+..+-+
T Consensus 333 T-dPIesli~Sa~e~qrayaqALlvDr~aL 361 (430)
T COG4952 333 T-DPIESLIQSALEVQRAYAQALLVDRKAL 361 (430)
T ss_pred C-cHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 8 6689999999999999999999886543
No 11
>PRK01076 L-rhamnose isomerase; Provisional
Probab=99.97 E-value=1.6e-30 Score=269.14 Aligned_cols=272 Identities=14% Similarity=0.115 Sum_probs=215.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHh-CCceecccCCCCCC-CCCCHHHH-HHhHHHHHHHHHHHhcCCceeeeeccCCCCCcc
Q 037393 140 GTNSMAMAKRRMRANFEFIDKL-GVDFWCFHDRDIAP-DGETLKEA-NANLDEVVALAKELQGTKVRPLWGTAQLFSHPR 216 (503)
Q Consensus 140 ~~d~~e~a~~r~~~afe~l~kL-G~~~~~fHD~Dl~P-~g~t~~e~-~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~pr 216 (503)
+.+|-| ++.++=..++-. |-+.+.+|-+--.. +..+-.|. -+.....++..+ +.|+++. .+||+|+||.
T Consensus 69 aR~~~E----l~~D~~~~~~L~pg~~~vnLH~~y~~~~~~vdrd~~~p~~f~~w~~~Ak---~~GlglD-fNpn~Fsh~~ 140 (419)
T PRK01076 69 ARNADE----LRADLEKALSLIPGKHRLNLHAIYLESDTPVDRDEIEPEHFKNWVEWAK---ENGLGLD-FNPTCFSHPL 140 (419)
T ss_pred CCCHHH----HHHHHHHHHHhcCCCCceeeecccccCCCcccccccCcccHHHHHHHHH---HcCCCcC-cCcccCCCcc
Confidence 345555 333333334434 67888888544310 01111111 134444333333 7788888 8899999999
Q ss_pred ccCC-CCCCCCHHHHHHHHHHHHHHHHHHH----HhCCCe-EEEccCCcCcC-CCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 037393 217 YMHG-AATSSEVAVYAYAAAQVKKAMEVTH----YLGGEN-YVFWGGREGYQ-SLLNTDMGREIDHMANFFESAAAYKKK 289 (503)
Q Consensus 217 fk~G-A~TnPD~~VRa~Ai~~vkraiDia~----eLGa~~-~v~WgGrEGyd-y~~qtD~~~~~d~l~e~l~~v~dya~~ 289 (503)
|++| +++||||+||++|+++.++|++|+. +||..+ +++|.+ ||+. ||.| ++ ..++||.++|+++.+..-+
T Consensus 141 ~k~G~SLs~pD~~iR~fwI~H~~~c~~I~~~~g~~lGs~~~~niWip-DG~kd~P~q-~~-~~r~Rl~eSLdeI~a~~~d 217 (419)
T PRK01076 141 SADGFTLSHPDPEIRQFWIEHCKASRRISAYFGEELGTPCVMNIWIP-DGMKDIPVD-RL-APRQRLLESLDEIISEKLD 217 (419)
T ss_pred ccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeEEeC-CCCCCCccc-cc-CHHHHHHHHHHHHHHhhcC
Confidence 9999 9999999999999999999999999 999999 899999 9999 9999 88 9999999999999986411
Q ss_pred cCCCceEEeccCCCCCCCC---CccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHH-HHHHHcCCeeEEecC
Q 037393 290 IGFKGNLLIEPKPQEPTKH---QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDI-ETARLNGLLGNIDAN 365 (503)
Q Consensus 290 iG~~~~~~IEPKP~EP~~h---~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~v-a~A~~~gkLg~ihlN 365 (503)
+-+.+.+||+|++||..- .-.+++++.++..++ ..+++|.|| +..++|+++.| ++++..++| .+|+|
T Consensus 218 -~~~~~~~vE~KlFg~g~EsYtvgs~df~~~ya~~~~------~~~llD~GH-~hPtenIe~kvsA~Ll~~~~L-~lH~s 288 (419)
T PRK01076 218 -PAHHIDAVESKLFGIGAESYTVGSHEFYMGYATSRQ------TALCLDAGH-FHPTEVISDKISAAMLYVPRL-LLHVS 288 (419)
T ss_pred -cccceeeeeeeccccccceeeccchHHHHHHHHHcC------CEEEEeCCC-CCCCCCHHHHHHHHHhcCCce-eEecC
Confidence 224699999999999983 447999999997743 899999999 89999999999 999999999 99999
Q ss_pred CCCCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCC---CCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 037393 366 TGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLA---PGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAA 438 (503)
Q Consensus 366 dg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~gG~~---~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~Aa 438 (503)
++.+ ||.|......-++++++.+|++++... .|-=.||++++| +++++++..+.+.++++||.+..
T Consensus 289 r~~r---wDsDhvv~~~Del~~I~~ElVr~~~l~r~~~gldffDaSiNr----I~A~v~g~rn~qkAll~ALL~p~ 357 (419)
T PRK01076 289 RPVR---WDSDHVVLLDDETQAIASEIVRHDLLDRVHIGLDFFDASINR----IAAWVIGTRNMKKALLRALLEPT 357 (419)
T ss_pred CCcc---ccccceeechHHHHHHHHHHHhcCccccccCCcchhhccccH----HHHHHHHHHHHHHHHHHHHcCCH
Confidence 9665 999987655559999999999998652 332248999995 68999999999999999998663
No 12
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=99.97 E-value=1.4e-29 Score=261.55 Aligned_cols=296 Identities=15% Similarity=0.140 Sum_probs=226.2
Q ss_pred ceeeeeccccCCCCCCC--CC-------CCC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHh-CCceecccCCCCCCC-
Q 037393 111 RFSVAFWHTFRGTGSDP--FG-------VPT---KSWPWEDGTNSMAMAKRRMRANFEFIDKL-GVDFWCFHDRDIAPD- 176 (503)
Q Consensus 111 rFsv~~Wht~~~~g~Dp--FG-------~~T---~~rpw~~~~d~~e~a~~r~~~afe~l~kL-G~~~~~fHD~Dl~P~- 176 (503)
++.++. | ||.|-|. || +|| .+-| ..+.+|-| ++.++=..++-. |-+.+.+|-+-....
T Consensus 28 ~~~Is~-h--cWqgddv~gf~~~~~~ltGGir~tgn~P-G~aR~~~E----l~~D~~~~~~L~pg~~~vnLH~~y~~~d~ 99 (414)
T TIGR01748 28 RLPISM-H--CWQGDDVSGFENPEGELTGGIQATGNYP-GKARTPSE----LRADLEKAMSLIPGKHRLNLHAIYLETDE 99 (414)
T ss_pred cCceee-c--cCCCCcccccccCCCCCCCceeeecCCC-CCCCCHHH----HHHHHHHHHHhcCCCCceeeecccccCCC
Confidence 455555 4 6777666 44 223 2222 23345555 333333344444 678888886543111
Q ss_pred CCCHHHH-HHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCC-CCCCCCHHHHHHHHHHHHHHHHH----HHHhCCC
Q 037393 177 GETLKEA-NANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHG-AATSSEVAVYAYAAAQVKKAMEV----THYLGGE 250 (503)
Q Consensus 177 g~t~~e~-~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~G-A~TnPD~~VRa~Ai~~vkraiDi----a~eLGa~ 250 (503)
-.+-.|. -+.....++..+ +.|+.+. .+||+|+||.|+.| +++|||++||+++|++.++|++| +++||..
T Consensus 100 ~vdrd~~~p~hf~~w~~~Ak---~~glglD-fNpn~Fsh~~~k~G~SLshpD~~iR~fwI~H~~~c~~I~~~fg~~lGs~ 175 (414)
T TIGR01748 100 PVSRDEIKPEHFKNWVEWAK---ANGLGLD-FNPTCFSHPLSADGFTLSHPDDSIRQFWIDHCKASRRISEYFGKELGTP 175 (414)
T ss_pred cccccccCcccHHHHHHHHH---HcCCCcC-cCcccCCCccccCCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 0111111 134444333333 7788888 88999999999999 99999999999999999999999 9999999
Q ss_pred eE-EEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCc-eEEeccCCCCCCCC---CccccHHHHHHHHHHhC
Q 037393 251 NY-VFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKG-NLLIEPKPQEPTKH---QYDWDAATAANFLRKYG 325 (503)
Q Consensus 251 ~~-v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~-~~~IEPKP~EP~~h---~y~~dvgt~l~fl~~~g 325 (503)
++ ++|.+ ||+.++.|.+++. ++||.++|+++.+. +++.+. +.++|+|++||..- .-.+++++.++..
T Consensus 176 ~l~niWip-DG~kd~~~d~~~~-r~Rl~eSLdeI~a~--~l~~~~~~~~vE~KlFg~g~EsYtvgs~df~~~ya~~---- 247 (414)
T TIGR01748 176 SVMNIWIP-DGMKDIPVDRLTP-RKRLLEALDEVFSE--KLNEAHHIDAVESKLFGLGAESYTVGSHEFYMGYATT---- 247 (414)
T ss_pred hhheeecC-CCCCCCCcccccH-HHHHHHHHHHHHHh--hcCchhhhhhheeeccccccceeeccchHHHHHHHcc----
Confidence 99 99999 9999999999999 99999999999864 465555 89999999999983 4479999999875
Q ss_pred CCCCceeecccccccccCCCHH-HHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCC---CC
Q 037393 326 LINDFKLNIECNHATLSGHSCH-HDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGGLA---PG 401 (503)
Q Consensus 326 l~~~~gVniD~gHa~lAG~n~a-h~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~gG~~---~G 401 (503)
++..|++|.|| +..++|++ +.+++++..++|+ +|+|+ -.-||.|....==-++++++.+|++++... .|
T Consensus 248 --~~~~~llD~GH-~hPtenIedkI~A~Ll~~~~L~-lH~sr---~vrWDSDHv~~~DDdl~~I~~EiVr~~~l~r~~~g 320 (414)
T TIGR01748 248 --RQKLLCLDAGH-FHPTEVISNKISSAMLYVPQLL-LHVSR---PVRWDSDHVVLLDDELQEIASEIVRNDLLDRVHIG 320 (414)
T ss_pred --CCcEEEEeCCC-CCCCCcHHHHHHHHHhcCCcee-EeecC---CcccCCCceEEeCHHHHHHHHHHHhcCccccccCC
Confidence 45899999999 89999999 9999999999999 99999 567999975332234589999999988653 23
Q ss_pred cccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 037393 402 GFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTA 437 (503)
Q Consensus 402 gi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~A 437 (503)
-=.||++++| +++++++..+.+.++++||.+.
T Consensus 321 ldffDaSiNr----I~A~vig~rn~qkAll~ALL~p 352 (414)
T TIGR01748 321 LDFFDASINR----IAAWVIGTRNMKKALLRALLEP 352 (414)
T ss_pred cchhhccccH----HHHHHHHHHHHHHHHHHHHcCC
Confidence 2238999995 6899999999999999999866
No 13
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=99.83 E-value=4.1e-18 Score=168.08 Aligned_cols=245 Identities=12% Similarity=0.068 Sum_probs=172.6
Q ss_pred HHHHHHHHhCCceecccCCC----CCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHH
Q 037393 153 ANFEFIDKLGVDFWCFHDRD----IAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVA 228 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~D----l~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~ 228 (503)
++++.++++|++++++.-.+ +.|.+.+..+ +++ ..+.+.++||+|..++.+.+.. -.++++|++
T Consensus 20 e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~----~~~---~~~~l~~~gl~i~~~~~~~~~~-----~~l~~~~~~ 87 (279)
T TIGR00542 20 ERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQ----RLA---LVNAIIETGVRIPSMCLSAHRR-----FPLGSKDKA 87 (279)
T ss_pred HHHHHHHHcCCCEEEEecCCccchhhccCCCHHH----HHH---HHHHHHHcCCCceeeecCCCcc-----CcCCCcCHH
Confidence 45678999999999983221 2223333332 222 3344559999998875542221 357899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCC
Q 037393 229 VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKH 308 (503)
Q Consensus 229 VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h 308 (503)
+|+.+++.++++|++|++||++.++++++.. ....+..+.|+++++.|+++++++++.|. +++||+-+.
T Consensus 88 ~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv--~l~lE~~~~----- 156 (279)
T TIGR00542 88 VRQQGLEIMEKAIQLARDLGIRTIQLAGYDV----YYEEHDEETRRRFREGLKEAVELAARAQV--TLAVEIMDT----- 156 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEecCccc----ccCcCCHHHHHHHHHHHHHHHHHHHHcCC--EEEEeeCCC-----
Confidence 9999999999999999999999998876532 22344577899999999999999999876 999997542
Q ss_pred CccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCc-----CCHH
Q 037393 309 QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFL-----TDIG 383 (503)
Q Consensus 309 ~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~-----~~~~ 383 (503)
.++.+...++.+++.++.|+ +|+++|++|+...|.++..++. ...++++|||++|.+. + ..+.-| .+..
T Consensus 157 ~~~~t~~~~~~li~~v~~~~-v~~~~D~~h~~~~~~~~~~~i~--~~~~~i~~vHikD~~~--~-~~~~~p~G~G~id~~ 230 (279)
T TIGR00542 157 PFMSSISKWLKWDHYLNSPW-FTLYPDIGNLSAWDNDVQMELQ--LGIDKIVAIHLKDTKP--G-QFKDVPFGEGCVDFE 230 (279)
T ss_pred chhcCHHHHHHHHHHcCCCc-eEEEeCcChhhhccCCHHHHHH--HhhhhEEEEEeCCCCC--C-ccCCcCCCCCccCHH
Confidence 35677888899999999885 9999999999999999988764 3358999999999643 1 112222 2444
Q ss_pred HHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHH
Q 037393 384 EATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLR 435 (503)
Q Consensus 384 e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~ 435 (503)
.. ...|+..| |+|++.+..+..+-+ ++. .+...+++...+.+.
T Consensus 231 ~~----~~aL~~~g-y~G~l~iE~~~~~~~-~~~---~~~~~~~~~l~~~~~ 273 (279)
T TIGR00542 231 RC----FKTLKQLN-YRGPFLIEMWSEKAE-EPV---AEIIQARDWIEARMA 273 (279)
T ss_pred HH----HHHHHHhC-CceeEEEEecCCccc-ChH---HHHHHHHHHHHHHHH
Confidence 33 33445555 489999988765542 443 333444444444433
No 14
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=99.82 E-value=3e-18 Score=168.73 Aligned_cols=243 Identities=10% Similarity=0.046 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcC-CceeeeeccCCCCCccccCCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGT-KVRPLWGTAQLFSHPRYMHGAATSSE 226 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~t-Gvkl~~~tanlF~~prfk~GA~TnPD 226 (503)
.++.+|+.++++|++++.+ +..+..+.... +...+++ +.+.+.++ |+.+... +.+ .+.+.+|+
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~---~~~~~~~---l~~~~~~~~~~~i~~~-~~~-------~~~~~~~~ 76 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMFLGNPRSWLSRPL---KKERAEK---FKAIAEEGPSICLSVH-APY-------LINLASPD 76 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEEcCCCCccCCCCC---CHHHHHH---HHHHHHHcCCCcEEEE-cCc-------eeccCCCC
Confidence 4567788999999999977 44443332221 2234443 22333366 5554433 211 24578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC
Q 037393 227 VAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT 306 (503)
Q Consensus 227 ~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~ 306 (503)
+++|+.+++.+++++++|++||++.+++|+|... ..+..+.|+.+++.++.+++++++.|. +++||+.|..+
T Consensus 77 ~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~-----~~~~~~~~~~~~~~l~~l~~~a~~~gi--~l~lEn~~~~~- 148 (279)
T cd00019 77 KEKREKSIERLKDEIERCEELGIRLLVFHPGSYL-----GQSKEEGLKRVIEALNELIDKAETKGV--VIALETMAGQG- 148 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCC-----CCCHHHHHHHHHHHHHHHHHhccCCCC--EEEEeCCCCCC-
Confidence 9999999999999999999999999999999643 157889999999999999999988876 99999999875
Q ss_pred CCCccccHHHHHHHHHHhC-CCCCceeecccccccccCCC------HHHHHHHHHH---cCCeeEEecCCCCCCCCCCCC
Q 037393 307 KHQYDWDAATAANFLRKYG-LINDFKLNIECNHATLSGHS------CHHDIETARL---NGLLGNIDANTGDPQVGWDTD 376 (503)
Q Consensus 307 ~h~y~~dvgt~l~fl~~~g-l~~~~gVniD~gHa~lAG~n------~ah~va~A~~---~gkLg~ihlNdg~~q~Gwd~D 376 (503)
..+..++..++.++++++ .|+ +|+++|++|+.+.|.+ ++..+..... .+++.+||++|++...+-..+
T Consensus 149 -~~~~~t~~~~~~li~~v~~~~~-~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~~~~~ 226 (279)
T cd00019 149 -NEIGSSFEELKEIIDLIKEKPR-VGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELGSGKD 226 (279)
T ss_pred -CCCCCCHHHHHHHHHhcCCCCC-eEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCcccCCCc
Confidence 355788899999999999 665 9999999999999998 5555554433 346899999997643221112
Q ss_pred CC-c-----CCHHHHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHH
Q 037393 377 QF-L-----TDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAH 423 (503)
Q Consensus 377 qf-~-----~~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~ 423 (503)
.. | ++..+. ...|+.-|+++|++.+-.+++. ++++.+...
T Consensus 227 ~~~~~G~G~id~~~~----l~~L~~~~y~~g~~~lE~~~~~---~~~~~~~~~ 272 (279)
T cd00019 227 RHEPIGEGDIDGEEL----FKELKKDPYQNIPLILETPSEN---RDAAKIKKE 272 (279)
T ss_pred cccCCCCCCcCCHHH----HHHHHhCcccCCCEEEeCCCCC---ccchhHHHH
Confidence 21 1 244443 2344555544899999886542 354544433
No 15
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=99.82 E-value=1.1e-19 Score=166.87 Aligned_cols=205 Identities=17% Similarity=0.214 Sum_probs=160.0
Q ss_pred HHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHH
Q 037393 155 FEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAA 234 (503)
Q Consensus 155 fe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai 234 (503)
|+.++++|++++++...+..+.... ...+++ +.+.+.++||++.+.++.......... ..++.++ |+.++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~----~~~~~~---~~~~~~~~gl~i~~~~~~~~~~~~~~~--~~~~~~~-r~~~~ 70 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK----DDEAEE---LRRLLEDYGLKIASLHPPTNFWSPDEE--NGSANDE-REEAL 70 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH----HHHHHH---HHHHHHHTTCEEEEEEEEESSSCTGTT--STTSSSH-HHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc----hHHHHH---HHHHHHHcCCeEEEEeccccccccccc--ccCcchh-hHHHH
Confidence 5789999999999966664432211 222332 233344999999888766555433222 3344444 99999
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccH
Q 037393 235 AQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDA 314 (503)
Q Consensus 235 ~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dv 314 (503)
+.++++|++|++||++.+++|+|+ +....+.+..+.++++++.|+.+++++.+.|. +++|||.|..+....+. +
T Consensus 71 ~~~~~~i~~a~~lg~~~i~~~~g~--~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~i~lE~~~~~~~~~~~~--~ 144 (213)
T PF01261_consen 71 EYLKKAIDLAKRLGAKYIVVHSGR--YPSGPEDDTEENWERLAENLRELAEIAEEYGV--RIALENHPGPFSETPFS--V 144 (213)
T ss_dssp HHHHHHHHHHHHHTBSEEEEECTT--ESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTS--EEEEE-SSSSSSSEESS--H
T ss_pred HHHHHHHHHHHHhCCCceeecCcc--cccccCCCHHHHHHHHHHHHHHHHhhhhhhcc--eEEEecccCccccchhh--H
Confidence 999999999999999999999996 55677889999999999999999999999985 99999999997654443 7
Q ss_pred HHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCC
Q 037393 315 ATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQF 378 (503)
Q Consensus 315 gt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf 378 (503)
..+..++++++.++ +|+++|++|..+++.++.+.+...... +.+||++|.....+|..++.
T Consensus 145 ~~~~~~l~~~~~~~-~~i~~D~~h~~~~~~~~~~~i~~~~~~--i~~vHi~D~~~~~~~~~~~~ 205 (213)
T PF01261_consen 145 EEIYRLLEEVDSPN-VGICFDTGHLIMAGEDPDEAIKRLAPR--IKHVHIKDANGDLDWGRDDH 205 (213)
T ss_dssp HHHHHHHHHHTTTT-EEEEEEHHHHHHTTHHHHHHHHHHHHG--EEEEEE-EESSTTTSSSTTE
T ss_pred HHHHHHHhhcCCCc-ceEEEehHHHHHcCCCHHHHHHHhhcc--eeEEEEeCCCCcccCCCCcc
Confidence 99999999999987 999999999999999999988777665 99999999776555665553
No 16
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=99.81 E-value=1.2e-17 Score=163.41 Aligned_cols=239 Identities=14% Similarity=0.120 Sum_probs=169.5
Q ss_pred HHHHHHHHHHhCCceecccC--CCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCH
Q 037393 151 MRANFEFIDKLGVDFWCFHD--RDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEV 227 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~fHD--~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~ 227 (503)
++++|+.++++|++++++.- +..++ .++. ...++ .++++. +.|+++...++-. + .| .-.+.++++
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~--~~~~--~~~~~----~l~~~~~~~gl~v~s~~~~~--~-~~-~~~~~~~~~ 82 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFA--PDLK--AGGIK----QIKALAQTYQMPIIGYTPET--N-GY-PYNMMLGDE 82 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccc--cccC--chHHH----HHHHHHHHcCCeEEEecCcc--c-Cc-CccccCCCH
Confidence 34556799999999999831 11111 1111 11223 334444 9999987765411 1 01 012456789
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 228 AVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 228 ~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
+.|+.+++.++++|++|++||++.+++|++..|+. .+..+.|+++++.|+.+++++++.|. +++|||=+ |..
T Consensus 83 ~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~----~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~iE~~~--~~~ 154 (275)
T PRK09856 83 HMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYL----TPPNVIWGRLAENLSELCEYAENIGM--DLILEPLT--PYE 154 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcCC--EEEEecCC--CCc
Confidence 99999999999999999999999999999988764 46788999999999999999999875 99999742 223
Q ss_pred CCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCc----CCHH
Q 037393 308 HQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFL----TDIG 383 (503)
Q Consensus 308 h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~----~~~~ 383 (503)
..++.+...++.+++.++.|+ +|+++|++|+...|+++...+... .+++++||++|++.. .+....| ++..
T Consensus 155 ~~~~~t~~~~~~l~~~~~~~~-v~~~~D~~h~~~~~~~~~~~i~~~--~~rI~~vHi~D~~~~--~~~~~~pG~G~id~~ 229 (275)
T PRK09856 155 SNVVCNANDVLHALALVPSPR-LFSMVDICAPYVQAEPVMSYFDKL--GDKLRHLHIVDSDGA--SDTHYIPGEGKMPLR 229 (275)
T ss_pred ccccCCHHHHHHHHHHcCCCc-ceeEEeecchhcCCCCHHHHHHHh--CCcEEEEEEEcCCCC--CCCCcCCCCCCCCHH
Confidence 456788999999999999876 999999999999999988766654 478999999997542 1111122 2443
Q ss_pred HHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHH
Q 037393 384 EATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLF 420 (503)
Q Consensus 384 e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~ 420 (503)
++ .+.|+..|+ +|++.+-..+. ...+|....
T Consensus 230 ~i----~~~L~~~gy-~g~~~lE~~~~-~~~~p~~~~ 260 (275)
T PRK09856 230 EL----MRDIIDRGY-EGYCTVELVTM-YMNEPRLYA 260 (275)
T ss_pred HH----HHHHHHcCC-CceEEEEeccc-cccCHHHHH
Confidence 33 333455554 89988877543 234554433
No 17
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=99.81 E-value=6e-19 Score=182.43 Aligned_cols=253 Identities=17% Similarity=0.217 Sum_probs=153.4
Q ss_pred CCceecccCCCCCCCCCCH---HHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCC-CCCCCCHHHHHHHHHHH
Q 037393 162 GVDFWCFHDRDIAPDGETL---KEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHG-AATSSEVAVYAYAAAQV 237 (503)
Q Consensus 162 G~~~~~fHD~Dl~P~g~t~---~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~G-A~TnPD~~VRa~Ai~~v 237 (503)
|-.-+.+|-.-....|... +-..++++.-++..| +.|+.+- .+|++||||.+++| +++|||++||+++|+++
T Consensus 86 G~~rlnLHa~Y~~~~g~~vdrd~iep~hF~~Wv~wAk---e~glgLd-fNpt~Fshp~~~dg~TLs~pD~~IR~fwI~H~ 161 (417)
T PF06134_consen 86 GKHRLNLHAIYADTDGEKVDRDEIEPEHFEKWVDWAK---ENGLGLD-FNPTFFSHPKAKDGLTLSHPDEEIRDFWIEHG 161 (417)
T ss_dssp S-EEEEEEGGG---TTS---GGG--GGGGHHHHHHHH---HCT-EEE-EE---SSSGGGTTS-STT-SSHHHHHHHHHHH
T ss_pred CCcccchhHHHHHhcCCcccccccChHHHHHHHHHHH---HcCCCcc-cCccccCCccccCCCcccCCCHHHHHHHHHHH
Confidence 7777777655444332221 112345665555554 6688886 67999999999999 89999999999999999
Q ss_pred HHHHHHHHHhCCC-----eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC-ceEEeccCCCCCCCCCcc
Q 037393 238 KKAMEVTHYLGGE-----NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFK-GNLLIEPKPQEPTKHQYD 311 (503)
Q Consensus 238 kraiDia~eLGa~-----~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~-~~~~IEPKP~EP~~h~y~ 311 (503)
|+|++|+...|.+ ...+|.. ||+.++.+.++.-+ +||.++|+++.+.. +... ..-++|+|-++|-.-+|.
T Consensus 162 ~~cr~I~~~~G~~lg~~cv~niWip-DG~kd~p~Dr~~~R-~RL~eSLdeI~a~~--~d~~~~~d~vEsKlFgiG~Esyt 237 (417)
T PF06134_consen 162 KACRRIAEYFGSELGSPCVMNIWIP-DGTKDPPQDRLRPR-QRLKESLDEIFAEK--IDPKYVLDAVESKLFGIGFESYT 237 (417)
T ss_dssp HHHHHHHHHHHHHHTS-EEEEEE----EESS--S-SHHHH-HHHHHHHHHHTCS-----TTTEEEEEE--S-BTTBSSEE
T ss_pred HHHHHHHHHHHHhhCCCcceeeecC-CCCCCCCcccchHH-HHHHHHHHHHHHhh--cCHHhhhhhhheeccccceeeEe
Confidence 9999999887765 4799999 99999999999877 59999999998642 2222 245899999999887773
Q ss_pred -ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHH-HHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHH
Q 037393 312 -WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIE-TARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIM 389 (503)
Q Consensus 312 -~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va-~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m 389 (503)
++..-.++.+ ++ ++.-|++|.|| .-.+++++.-+. +++-.++| .+|+|++ --||.|....---+++.++
T Consensus 238 VgSheFy~~YA--~~--~~~~~~lD~GH-fhPtE~Isdkisa~Llf~~~l-~lHvsRp---vrWDSDHVV~~dDel~~I~ 308 (417)
T PF06134_consen 238 VGSHEFYMGYA--LG--RNKMVCLDTGH-FHPTENISDKISALLLFVDEL-ALHVSRP---VRWDSDHVVIFDDELFEIA 308 (417)
T ss_dssp SS-HHHHHHHH--HH--CT-EEEEETTS-SSTT--CHHHHHHHCTTSS-E-EEEE-B----SSSS--B---SSHHHHHHH
T ss_pred cCchHHHHHHh--hc--CCcEEEEeCCC-CCCCCcHHHHHHHHHHhCCCe-eEeecCC---ccccCCeEEeecHHHHHHH
Confidence 3322222222 33 55789999999 678889986554 55555555 6999995 4599998654444999999
Q ss_pred HHHHHhCCCCCCccc---ccccCcCCCCChHHHHHHHHHHHHHHHHHHH
Q 037393 390 LSVIKNGGLAPGGFN---FDAKLRRESTDVEDLFIAHIVGMDTVARGLR 435 (503)
Q Consensus 390 ~~iLk~gG~~~Ggi~---FDakprR~s~d~edl~~a~i~~md~~ar~l~ 435 (503)
.+|++++++..=.+. ||+..+| +-..+++..+-+.++++||.
T Consensus 309 ~EiVR~~~ldrv~igLDfFDasInR----IaAwviG~rn~qKAll~ALL 353 (417)
T PF06134_consen 309 KEIVRNDALDRVHIGLDFFDASINR----IAAWVIGTRNMQKALLKALL 353 (417)
T ss_dssp HHHHHTTTTTTEEEEE----TSS-H----HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcCcccceeeehhhhhhHHHH----HHHHHHHHHHHHHHHHHHHC
Confidence 999999987322343 3555554 34555555555555555544
No 18
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=99.80 E-value=3e-17 Score=160.76 Aligned_cols=237 Identities=13% Similarity=0.063 Sum_probs=167.1
Q ss_pred HHHHHHHHHhCCceecccCCC----CCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCH
Q 037393 152 RANFEFIDKLGVDFWCFHDRD----IAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEV 227 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~fHD~D----l~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~ 227 (503)
+++++..+++|++++++.-.+ ..+.+.+.. .+++ ..+.+.++||++...+...+. .| .+++||+
T Consensus 19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~----~~~~---l~~~l~~~Gl~i~~~~~~~~~--~~---~~~~~d~ 86 (284)
T PRK13210 19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKE----ERLS---LVKAIYETGVRIPSMCLSGHR--RF---PFGSRDP 86 (284)
T ss_pred HHHHHHHHHcCCCeEEEecCCcccccccccCCHH----HHHH---HHHHHHHcCCCceEEeccccc--Cc---CCCCCCH
Confidence 345679999999999994222 122222222 2332 223344999999877543221 12 4778999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 228 AVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 228 ~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
+.|+.+++.++++|++|++||++.++++++...+ ..+....|+++++.|+.+++++.+.|. +++||+-|+
T Consensus 87 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lE~~~~---- 156 (284)
T PRK13210 87 ATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYY----EEKSEETRQRFIEGLAWAVEQAAAAQV--MLAVEIMDT---- 156 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEECCccccc----ccccHHHHHHHHHHHHHHHHHHHHhCC--EEEEEecCc----
Confidence 9999999999999999999999999997553221 233467899999999999999999986 999999763
Q ss_pred CCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCC---CCCCCCCc-----
Q 037393 308 HQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQV---GWDTDQFL----- 379 (503)
Q Consensus 308 h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~---Gwd~Dqf~----- 379 (503)
.+..+...++.+++.++.|+ +|+++|+||+...|.++...+.. -.+++.+||++|..... .......|
T Consensus 157 -~~~~~~~~~~~l~~~v~~~~-~~~~~D~~h~~~~~~~~~~~l~~--~~~~i~~vHikD~~~~~~~~~g~~~~~p~G~G~ 232 (284)
T PRK13210 157 -PFMNSISKWKKWDKEIDSPW-LTVYPDVGNLSAWGNDVWSELKL--GIDHIAAIHLKDTYAVTETSKGQFRDVPFGEGC 232 (284)
T ss_pred -cccCCHHHHHHHHHHcCCCc-eeEEecCChhhhcCCCHHHHHHH--hcCeEEEEEeccccccccCCCCccccccCCCcc
Confidence 36788889999999999875 99999999998889999887653 46899999999964211 01111112
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHH
Q 037393 380 TDIGEATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLF 420 (503)
Q Consensus 380 ~~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~ 420 (503)
+|..+. +..|+..|+ +|++.+-..+... .++++.+
T Consensus 233 id~~~~----~~~L~~~gy-~G~~~~E~~~~~~-~~~~~~~ 267 (284)
T PRK13210 233 VDFVGI----FKTLKELNY-RGPFLIEMWTEKA-EEPRAEI 267 (284)
T ss_pred cCHHHH----HHHHHHcCC-CceEEEEEecCcc-cCHHHHH
Confidence 244333 345566664 8999888765432 3454443
No 19
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=99.80 E-value=2.2e-17 Score=162.50 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=163.1
Q ss_pred HHHHHHHHHhCCceecccCCCC----CCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCC
Q 037393 152 RANFEFIDKLGVDFWCFHDRDI----APDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSE 226 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~fHD~Dl----~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD 226 (503)
+++|+.++++|++++++.-.+. .+.+.+.. .++ .++++. ++||++..+++..+. . -.+++||
T Consensus 24 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~----~~~----~l~~~l~~~gl~i~~~~~~~~~--~---~~~~~~~ 90 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMSVDESDERLARLDWSRE----QRL----ALVNALVETGFRVNSMCLSAHR--R---FPLGSED 90 (283)
T ss_pred HHHHHHHHHcCCCeEEEecCccccchhccCCCHH----HHH----HHHHHHHHcCCceeEEeccccc--c---cCCCCCC
Confidence 3456789999999999953321 11111222 233 234444 999999887654332 1 2367899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC
Q 037393 227 VAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT 306 (503)
Q Consensus 227 ~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~ 306 (503)
+++|+.++++++++|+.|++||++.+++.++.. ....+....|+++++.|+.+++++++.|. +++||+-++
T Consensus 91 ~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~GV--~i~iE~~~~--- 161 (283)
T PRK13209 91 DAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDV----YYEQANNETRRRFIDGLKESVELASRASV--TLAFEIMDT--- 161 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCccc----cccccHHHHHHHHHHHHHHHHHHHHHhCC--EEEEeecCC---
Confidence 999999999999999999999999999876533 23455688899999999999999999886 999999754
Q ss_pred CCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCc-----CC
Q 037393 307 KHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFL-----TD 381 (503)
Q Consensus 307 ~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~-----~~ 381 (503)
.+..+...++.++++++.|+ +|+++|+||....+.++...+. ...+++.+||++|... + ..+..| +|
T Consensus 162 --~~~~~~~~~~~ll~~v~~~~-lgl~~D~~h~~~~~~~~~~~i~--~~~~~i~~vHikD~~~--~-~~~~~~~G~G~id 233 (283)
T PRK13209 162 --PFMNSISKALGYAHYLNSPW-FQLYPDIGNLSAWDNDVQMELQ--AGIGHIVAFHVKDTKP--G-VFKNVPFGEGVVD 233 (283)
T ss_pred --cccCCHHHHHHHHHHhCCCc-cceEeccchHHHhcCCHHHHHH--hCcCcEEEEEeccCCC--C-CCceeCCCCCccC
Confidence 36678999999999999875 9999999999999888876553 4569999999999643 1 111112 24
Q ss_pred HHHHHHHHHHHHHhCCCCCCccccccc
Q 037393 382 IGEATSIMLSVIKNGGLAPGGFNFDAK 408 (503)
Q Consensus 382 ~~e~~~~m~~iLk~gG~~~Ggi~FDak 408 (503)
..+. ...|+..|+ +|++..-..
T Consensus 234 ~~~i----~~~L~~~gy-~g~~~~E~~ 255 (283)
T PRK13209 234 FERC----FKTLKQSGY-CGPYLIEMW 255 (283)
T ss_pred HHHH----HHHHHHcCC-CceEEEEec
Confidence 4443 244566664 898888766
No 20
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=99.79 E-value=4.9e-17 Score=157.88 Aligned_cols=226 Identities=14% Similarity=0.091 Sum_probs=164.4
Q ss_pred HHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHH
Q 037393 151 MRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAV 229 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~V 229 (503)
++++++.++++|++++++.. |...+ +++ ++++. ++||++...+..+..-..-..|..+.|++..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~----~~~~~-------~~~----l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLF----PYDWD-------AEA----LKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREE 80 (254)
T ss_pred HHHHHHHHHHcCCCEEEecC----CccCC-------HHH----HHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHH
Confidence 45667899999999999964 33222 232 23344 9999998875443211111234456677664
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc-CCCCCCCC
Q 037393 230 YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP-KPQEPTKH 308 (503)
Q Consensus 230 Ra~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP-KP~EP~~h 308 (503)
...++++++|++|++||++.+++|.|+. +.+.+..+.|+++++.++.+++++.+.|. +++||| .|.+ ...
T Consensus 81 --~~~~~~~~~i~~a~~lg~~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~A~~~gi--~l~lE~~~~~~-~~~ 151 (254)
T TIGR03234 81 --EFREGVALAIAYARALGCPQVNCLAGKR----PAGVSPEEARATLVENLRYAADALDRIGL--TLLIEPINSFD-MPG 151 (254)
T ss_pred --HHHHHHHHHHHHHHHhCCCEEEECcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCC--EEEEEECCccc-CCC
Confidence 3578999999999999999999999865 45577889999999999999999999875 999997 4432 223
Q ss_pred CccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHH
Q 037393 309 QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSI 388 (503)
Q Consensus 309 ~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~ 388 (503)
.++.+...++.++++++.|+ +|+++|++|..+.|+++...+... .+++.|||++|+.. .+.-.+-.+|..+.
T Consensus 152 ~~l~t~~~~~~li~~v~~~~-~~i~~D~~h~~~~~e~~~~~i~~~--~~~i~~vHi~D~~~--~~~~G~G~id~~~i--- 223 (254)
T TIGR03234 152 FFLTTTEQALAVIDDVGREN-LKLQYDLYHMQRMGGDLARTLAAY--AAHIGHVQIADNPG--RHEPGTGEINYRFL--- 223 (254)
T ss_pred ChhcCHHHHHHHHHHhCCCC-EeEeeehhhhhhhCCCHHHHHHHh--hccEeEEEeCCCCC--CCCCCCCccCHHHH---
Confidence 46789999999999999876 999999999999999998876665 57999999998531 11122222344332
Q ss_pred HHHHHHhCCCCCCcccccccCc
Q 037393 389 MLSVIKNGGLAPGGFNFDAKLR 410 (503)
Q Consensus 389 m~~iLk~gG~~~Ggi~FDakpr 410 (503)
...|+..|+ +|++.+-..|.
T Consensus 224 -l~~L~~~gy-~g~~~~E~~~~ 243 (254)
T TIGR03234 224 -FAVLDRLGY-DGWVGLEYKPL 243 (254)
T ss_pred -HHHHHHCCC-CceEEEEEecC
Confidence 334455554 89988876654
No 21
>PRK01060 endonuclease IV; Provisional
Probab=99.76 E-value=6.2e-17 Score=159.09 Aligned_cols=229 Identities=12% Similarity=0.099 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhCCceecc--cCCCCCCC-CCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCC
Q 037393 151 MRANFEFIDKLGVDFWCF--HDRDIAPD-GETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSE 226 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~f--HD~Dl~P~-g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD 226 (503)
++++++.++++|++++++ +.+..+.. ..+.+ .+++ ++++. ++|+++..+++ |..|- ..+++||
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~----~~~~----lk~~~~~~gl~~~~~~~----h~~~~-~nl~~~d 80 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEEL----NIEA----FKAACEKYGISPEDILV----HAPYL-INLGNPN 80 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHH----HHHH----HHHHHHHcCCCCCceEE----ecceE-ecCCCCC
Confidence 345667999999999998 33332211 12222 2332 33344 89998754432 22332 6789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC
Q 037393 227 VAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT 306 (503)
Q Consensus 227 ~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~ 306 (503)
+++|+++++.+++++++|++||++.+++++|.. ....+..+.|+++++.++.+++.+ . +++++||+-|...
T Consensus 81 ~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~----~~~~~~~~~~~~~~e~l~~l~~~~--~--gv~l~iEn~~~~~- 151 (281)
T PRK01060 81 KEILEKSRDFLIQEIERCAALGAKLLVFHPGSH----LGDIDEEDCLARIAESLNEALDKT--Q--GVTIVLENTAGQG- 151 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcC----CCCCcHHHHHHHHHHHHHHHHhcC--C--CCEEEEecCCCCC-
Confidence 999999999999999999999999999999953 223345569999999999997643 2 3699999987542
Q ss_pred CCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHH----HHHHHHHH---cCCeeEEecCCCCCCCCCCCCCC-
Q 037393 307 KHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCH----HDIETARL---NGLLGNIDANTGDPQVGWDTDQF- 378 (503)
Q Consensus 307 ~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~a----h~va~A~~---~gkLg~ihlNdg~~q~Gwd~Dqf- 378 (503)
..+..+......+++.++.++.+|+++|+||+.+.|.++. ..+..... .+++.+||+||++...|-..|+.
T Consensus 152 -~~~~~~~~~~~~l~~~v~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~~~~~d~H~ 230 (281)
T PRK01060 152 -SELGRRFEELARIIDGVEDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEFGSRKDRHA 230 (281)
T ss_pred -CcccCCHHHHHHHHHhcCCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcccCCCCccc
Confidence 4566788888999999987656999999999999999988 44443333 25999999999765433222321
Q ss_pred -c----CCHHHHHHHHHHHHHhCCCCCCc-ccccc
Q 037393 379 -L----TDIGEATSIMLSVIKNGGLAPGG-FNFDA 407 (503)
Q Consensus 379 -~----~~~~e~~~~m~~iLk~gG~~~Gg-i~FDa 407 (503)
+ .+. ..+..+|+.-|+ +|+ +-+-.
T Consensus 231 ~~G~G~id~----~~~~~~L~~~~y-~g~~l~lE~ 260 (281)
T PRK01060 231 NLGEGTIGF----DALRYIVHDPRF-DGIPKILET 260 (281)
T ss_pred CCcCCcCCH----HHHHHHHhCccc-CCCeEEEeC
Confidence 1 132 334556677664 564 65554
No 22
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=99.69 E-value=2.5e-15 Score=147.21 Aligned_cols=201 Identities=13% Similarity=0.120 Sum_probs=145.1
Q ss_pred HHHHHHHHHHhCCceecccCCCCCCC-CCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHH
Q 037393 151 MRANFEFIDKLGVDFWCFHDRDIAPD-GETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVA 228 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~fHD~Dl~P~-g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~ 228 (503)
+..+|+.+.++|++++.++-...... +..+. ...++ .++++. ++||++..-+ |-+ ..+++||++
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~gl~ls~h~------p~~--~nl~s~d~~ 77 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLS--EETAE----KFKEALKENNIDVSVHA------PYL--INLASPDKE 77 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCC--HHHHH----HHHHHHHHcCCCEEEEC------Cce--ecCCCCCHH
Confidence 44577899999999999965553211 11111 11223 234444 8899865432 222 458899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCC
Q 037393 229 VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKH 308 (503)
Q Consensus 229 VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h 308 (503)
+|+.++++++++|++|++||++.+++|+|+. ...+..+.|+++++.|+.++++ +.| ++++||..|..+ +
T Consensus 78 ~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~-----~~~~~e~~~~~~~~~l~~l~~~--~~g--v~l~lEn~~~~~--~ 146 (273)
T smart00518 78 KVEKSIERLIDEIKRCEELGIKALVFHPGSY-----LKQSKEEALNRIIESLNEVIDE--TKG--VVILLETTAGKG--S 146 (273)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccc-----cCCCHHHHHHHHHHHHHHHHhc--cCC--cEEEEeccCCCC--C
Confidence 9999999999999999999999999999853 2466789999999999999994 344 599999998664 3
Q ss_pred CccccHHHHHHHHHHhCCCCCceeecccccccccCCC---H---HHHHHHHH-Hc--CCeeEEecCCCCCCCCCCCC
Q 037393 309 QYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHS---C---HHDIETAR-LN--GLLGNIDANTGDPQVGWDTD 376 (503)
Q Consensus 309 ~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n---~---ah~va~A~-~~--gkLg~ihlNdg~~q~Gwd~D 376 (503)
.+..+......+++.++..+++|+++|+||+.++|.+ + ...+.... .. +++.+||++|++...|-..|
T Consensus 147 ~~~~~~~~~~~ll~~v~~~~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~~g~~~d 223 (273)
T smart00518 147 QIGSTFEDLKEIIDLIKELDRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIELGSGKD 223 (273)
T ss_pred ccCCCHHHHHHHHHhcCCCCCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCccCCCCc
Confidence 4455788899999999863359999999999999986 2 22222221 12 58999999997653333334
No 23
>PRK09989 hypothetical protein; Provisional
Probab=99.67 E-value=2.6e-14 Score=139.82 Aligned_cols=226 Identities=16% Similarity=0.065 Sum_probs=157.4
Q ss_pred HHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCC-CCCCCHHHHH
Q 037393 153 ANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGA-ATSSEVAVYA 231 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA-~TnPD~~VRa 231 (503)
++|+.++++|+++|++-. |.+.+.++ ..+.+.++||++...++... .+..|. .++.++.-+.
T Consensus 19 ~~l~~~~~~Gfd~VEl~~----~~~~~~~~----------~~~~l~~~Gl~v~~~~~~~~---~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09989 19 ERFAAARKAGFDAVEFLF----PYDYSTLQ----------IQKQLEQNHLTLALFNTAPG---DINAGEWGLSALPGREH 81 (258)
T ss_pred HHHHHHHHcCCCEEEECC----cccCCHHH----------HHHHHHHcCCcEEEeccCCC---ccCCCCCcccCCCccHH
Confidence 456789999999999842 33333321 12233399999887654321 111122 2334444456
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCcc
Q 037393 232 YAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311 (503)
Q Consensus 232 ~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~ 311 (503)
.+.+.++++|++|++||++.+++++|.- +...+..+.++++++.|+.+++++.+.|. ++.+||=|.-=..+.+.
T Consensus 82 ~~~~~l~~~i~~A~~lg~~~v~v~~g~~----~~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lE~l~~~~~~~~~~ 155 (258)
T PRK09989 82 EARADIDLALEYALALNCEQVHVMAGVV----PAGEDAERYRAVFIDNLRYAADRFAPHGK--RILVEALSPGVKPHYLF 155 (258)
T ss_pred HHHHHHHHHHHHHHHhCcCEEEECccCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCC--EEEEEeCCCCCCCCCcc
Confidence 6788999999999999999998877642 22346788999999999999999999886 99999865410124456
Q ss_pred ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHH
Q 037393 312 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLS 391 (503)
Q Consensus 312 ~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~ 391 (503)
.+...++.++++++.++ +|+++|++|+..+|.++...+... .++++|||+.|... ..--.+--.|+.+. ..
T Consensus 156 ~~~~~~~~ll~~v~~~~-v~l~lD~~h~~~~~~~~~~~i~~~--~~ri~hvHi~D~~~--~~~pG~G~id~~~i----~~ 226 (258)
T PRK09989 156 SSQYQALAIVEEVARDN-VFIQLDTFHAQKVDGNLTHLIRDY--AGKYAHVQIAGLPD--RHEPDDGEINYPWL----FR 226 (258)
T ss_pred CCHHHHHHHHHHcCCCC-eEEEeehHhHHHcCCCHHHHHHHh--hhhEEEEEECCCCC--CCCCCCCCcCHHHH----HH
Confidence 78889999999999876 999999999999999987766653 47899999987210 01011111355443 33
Q ss_pred HHHhCCCCCCcccccccCcC
Q 037393 392 VIKNGGLAPGGFNFDAKLRR 411 (503)
Q Consensus 392 iLk~gG~~~Ggi~FDakprR 411 (503)
.|+..| |+|++.+-.++.-
T Consensus 227 al~~~G-y~g~is~E~~~~~ 245 (258)
T PRK09989 227 LFDEVG-YQGWIGCEYKPRG 245 (258)
T ss_pred HHHHcC-CCeEEEEEEeeCC
Confidence 455566 4899999888863
No 24
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=99.62 E-value=1.6e-13 Score=134.23 Aligned_cols=226 Identities=16% Similarity=0.107 Sum_probs=150.4
Q ss_pred HHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCC-CCCHHHHH
Q 037393 153 ANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAAT-SSEVAVYA 231 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~T-nPD~~VRa 231 (503)
..++.++++|+++|++.. |...++++.. +.+.++||++... ++ ....+..+... +.+|..++
T Consensus 19 ~~l~~~a~~Gf~~VEl~~----~~~~~~~~~~----------~~l~~~gl~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK09997 19 ARFEKAAQCGFRGVEFMF----PYDYDIEELK----------QVLASNKLEHTLH--NL-PAGDWAAGERGIACIPGREE 81 (258)
T ss_pred HHHHHHHHhCCCEEEEcC----CCCCCHHHHH----------HHHHHcCCcEEEE--cC-CCCccccCcCccccCCCcHH
Confidence 345689999999999843 3443433221 2233899998542 11 11112222211 12333455
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccC-CCCCCCCCc
Q 037393 232 YAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPK-PQEPTKHQY 310 (503)
Q Consensus 232 ~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPK-P~EP~~h~y 310 (503)
...+.++++|++|++||++.+++-.|.. +...+..+.|+++++.|+.+++++++.|. +++|||= +.| ....+
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~~~g~~----~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv--~l~lE~~n~~~-~~~~~ 154 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINCLVGKT----PAGFSSEQIHATLVENLRYAANMLMKEDI--LLLIEPINHFD-IPGFH 154 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeCCCcC-CCCCc
Confidence 6678999999999999999887644421 22234677799999999999999999875 9999983 322 12345
Q ss_pred cccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHH
Q 037393 311 DWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIML 390 (503)
Q Consensus 311 ~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~ 390 (503)
+.+...++.++++++.|+ +|+++|++|+..+|.++...+... .++++|||+.|.....-..+.. .+.... .
T Consensus 155 ~~~~~~~~~ll~~v~~~~-v~l~~D~~h~~~~g~~~~~~~~~~--~~ri~~vHikD~~~~~~~G~G~--id~~~i----~ 225 (258)
T PRK09997 155 LTGTRQALKLIDDVGCCN-LKIQYDIYHMQRMEGELTNTMTQW--ADKIGHLQIADNPHRGEPGTGE--INYDYL----F 225 (258)
T ss_pred cCCHHHHHHHHHHhCCCC-EEEEeEHHHhhhcCCcHHHHHHHh--hCcccEEEeCCCCCCCCCCCCc--CCHHHH----H
Confidence 678999999999999876 999999999999999987765543 6899999999852111001111 244333 3
Q ss_pred HHHHhCCCCCCcccccccCcCC
Q 037393 391 SVIKNGGLAPGGFNFDAKLRRE 412 (503)
Q Consensus 391 ~iLk~gG~~~Ggi~FDakprR~ 412 (503)
..|+..| |+|++.+-..|...
T Consensus 226 ~aL~~~G-y~G~~~~E~~p~~~ 246 (258)
T PRK09997 226 KVIENSD-YNGWVGCEYKPQTT 246 (258)
T ss_pred HHHHHhC-CCeEEEEEEecCCC
Confidence 3455555 48999887766543
No 25
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=1e-13 Score=138.04 Aligned_cols=199 Identities=14% Similarity=0.110 Sum_probs=142.8
Q ss_pred HHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHH-HhcCCceeeeeccCCCCCccccCCCCCCCCH
Q 037393 151 MRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKE-LQGTKVRPLWGTAQLFSHPRYMHGAATSSEV 227 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~-l~~tGvkl~~~tanlF~~prfk~GA~TnPD~ 227 (503)
+..+++.++++|++.+.+ +.|.-......-.+.. . .+++ +.+.++.+..+ ..|.-|. =.++|||+
T Consensus 13 ~~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~---~----~~~~~~~~~~~~~~~i----~~Hapy~-iNlas~~~ 80 (274)
T TIGR00587 13 LQAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVI---D----WFKAALETNKNLSQIV----LVHAPYL-INLASPDE 80 (274)
T ss_pred HHHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHH---H----HHHHHHHHcCCCCcce----eccCCee-eecCCCCH
Confidence 345678999999999999 3333221111111112 1 2233 33776663222 2233454 45789999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 228 AVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 228 ~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
++|+.+++.+++++++|+.||++.+|+-+|.-.. .+..+.|+++.++|+.+++++. | ++++||.=|..+
T Consensus 81 ~~r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~-----~~~e~~~~~~~~~l~~l~~~~~--~--v~l~lEN~~~~~-- 149 (274)
T TIGR00587 81 EKEEKSLDVLDEELKRCELLGIMLYNFHPGSALK-----CSEEEGLDNLIESLNVVIKETK--I--VTILLENMAGQG-- 149 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCC-----CCHHHHHHHHHHHHHHHHhccC--C--CEEEEEeCCCCC--
Confidence 9999999999999999999999999999996421 2567899999999999998643 3 599999877553
Q ss_pred CCccccHHHHHHHHHHhCCCCCceeecccccccccCCCH--HHHHHHHHH-------cCCeeEEecCCCCCCCC
Q 037393 308 HQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSC--HHDIETARL-------NGLLGNIDANTGDPQVG 372 (503)
Q Consensus 308 h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~--ah~va~A~~-------~gkLg~ihlNdg~~q~G 372 (503)
+.+..+......+++.++..+++|+++|+||+..+|.++ ...+....+ .+++.+||+||++...|
T Consensus 150 ~~l~~~~~el~~ll~~~~~~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g 223 (274)
T TIGR00587 150 SELGRSFEELAYIIKVIVDKRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG 223 (274)
T ss_pred CccCCCHHHHHHHHHhcCCCCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc
Confidence 556678888999999998645699999999999999876 333443333 26899999999764334
No 26
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=99.53 E-value=4.1e-12 Score=123.31 Aligned_cols=190 Identities=19% Similarity=0.173 Sum_probs=141.3
Q ss_pred HHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHH
Q 037393 153 ANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAY 232 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~ 232 (503)
+.++.++++|++++++-..+..|..... +++ +.+.+.+.|+++....+. .+. +.+|++..|+.
T Consensus 19 ~~l~~~~~~G~~gvEi~~~~~~~~~~~~------~~~---l~~~l~~~gl~i~~~~~~-------~~~-~~~~~~~~~~~ 81 (274)
T COG1082 19 EILRKAAELGFDGVELSPGDLFPADYKE------LAE---LKELLADYGLEITSLAPF-------SNN-LLSPDEEEREE 81 (274)
T ss_pred HHHHHHHHhCCCeEecCCcccCCchhhh------HHH---HHHHHHHcCcEEEeeccc-------CCC-cCCCchhhHHH
Confidence 3456899999999988654444332111 232 233444899998775322 122 88999999999
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccC-CcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCcc
Q 037393 233 AAAQVKKAMEVTHYLGGENYVFWGG-REGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311 (503)
Q Consensus 233 Ai~~vkraiDia~eLGa~~~v~WgG-rEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~ 311 (503)
+++..++.+++|++||++.+++=.| .-+-.... .....|++..+.++++++++.+.|. ++.+|| ++....+.
T Consensus 82 ~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~--~~~~~~~~~~~~l~~l~~~a~~~~i--~l~~e~---~~~~~~~~ 154 (274)
T COG1082 82 ALEELKRAIELAKELGAKVVVVHPGLGAGADDPD--SPEEARERWAEALEELAEIAEELGI--GLALEN---HHHPGNVV 154 (274)
T ss_pred HHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCC--CCcccHHHHHHHHHHHHHHHHHhCC--ceEEee---cCCcccee
Confidence 9999999999999999998875554 22222111 4556668999999999999999855 999999 44445667
Q ss_pred ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCC
Q 037393 312 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDP 369 (503)
Q Consensus 312 ~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~ 369 (503)
.+..+++.++.+.+.+ ++|+++|++|+...|.+|...+..... +++|||+.|.+.
T Consensus 155 ~~~~~~~~~~~~~~~~-~v~~~lD~~H~~~~~~d~~~~~~~~~~--rI~hvH~kD~~~ 209 (274)
T COG1082 155 ETGADALDLLREVDSP-NVGLLLDTGHAFFAGEDPLEAIRKLGD--RIGHVHLKDADG 209 (274)
T ss_pred ecCHHHHHHHHhcCCC-ceEEEEecCchhhccCCHHHHHHHhhc--ceeEEEEeecCc
Confidence 7778899999999988 699999999999999977665554444 999999999764
No 27
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=99.27 E-value=1.9e-10 Score=121.99 Aligned_cols=201 Identities=9% Similarity=0.066 Sum_probs=138.6
Q ss_pred HHHHHHHHhCCceecccCCCCCCCCCCHH-HHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHH
Q 037393 153 ANFEFIDKLGVDFWCFHDRDIAPDGETLK-EANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYA 231 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~Dl~P~g~t~~-e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa 231 (503)
.|++.-.++|...+.+--.. |-+.... -....+++ +.+.+.++|+.+..+++ |--|- --++|||+++|+
T Consensus 145 ~a~~~a~~~g~~afqiF~~n--pr~w~~~~~~~~~~~~---f~~~~~~~gi~~~~i~~----HapYl-INLASpd~e~re 214 (413)
T PTZ00372 145 NSPINAYNIAGQAFALFLKN--QRTWNSPPLSDETIDK---FKENCKKYNYDPKFILP----HGSYL-INLANPDKEKRE 214 (413)
T ss_pred HHHHHHHHcCCCEEEEEcCC--CccCCCCCCCHHHHHH---HHHHHHHcCCCcceEEe----ecCce-ecCCCCCHHHHH
Confidence 36677788999988883333 3221111 01112222 22333388776544422 33343 447889999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCcc
Q 037393 232 YAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311 (503)
Q Consensus 232 ~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~ 311 (503)
++++.+++.|+.|.+||++.||+=+|.- ....+..+.|++++++|.++.+. .. +++++||.=|.. .+..-
T Consensus 215 kSv~~~~~eL~rA~~LGa~~VV~HPGs~----~~~~~~ee~i~~i~e~L~~~la~--~~--gV~IlLENmag~--g~~lG 284 (413)
T PTZ00372 215 KSYDAFLDDLQRCEQLGIKLYNFHPGST----VGQCSKEEGIKNIADCINKAHEE--TK--SVIIVLENTAGQ--KNSVG 284 (413)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECCCcC----CCCCCHHHHHHHHHHHHHHHHhC--cC--CCEEEEecCCCC--CCccc
Confidence 9999999999999999999999999963 34556688999999999998642 33 469999976654 23445
Q ss_pred ccHHHHHHHHHHhCCCCCceeecccccccccCCCH---HHHHHHHH------HcCCeeEEecCCCCCCCCC
Q 037393 312 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSC---HHDIETAR------LNGLLGNIDANTGDPQVGW 373 (503)
Q Consensus 312 ~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~---ah~va~A~------~~gkLg~ihlNdg~~q~Gw 373 (503)
.+......+++.++.++++||++|+||+..+|.++ +-...+.. -.++|.+||+||.+.-.|-
T Consensus 285 ~~~eeL~~Iid~v~~~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS 355 (413)
T PTZ00372 285 SKFEDLRDIIALVEDKSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGS 355 (413)
T ss_pred CCHHHHHHHHHhcCCcCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCC
Confidence 67778888889888767899999999999999643 22121211 1358999999998765443
No 28
>PRK03906 mannonate dehydratase; Provisional
Probab=99.27 E-value=5.7e-10 Score=117.53 Aligned_cols=180 Identities=13% Similarity=0.090 Sum_probs=134.7
Q ss_pred HHhHHHHHHHHHHHhcCCceeeeeccCCCCC-----cccc--C-----------------------CCCCCCCHHHHHHH
Q 037393 184 NANLDEVVALAKELQGTKVRPLWGTAQLFSH-----PRYM--H-----------------------GAATSSEVAVYAYA 233 (503)
Q Consensus 184 ~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~-----prfk--~-----------------------GA~TnPD~~VRa~A 233 (503)
.+.++...+.++.+...||++...+.--..+ -.+. + ++..++++++|++|
T Consensus 79 d~~ie~y~~sirnlg~~GI~~icYnfmpv~dwtrt~l~~~~~~ga~~l~f~~~~~~~~~~~~l~~~~~~~~~~~~~~~~a 158 (385)
T PRK03906 79 DRYIENYKQTLRNLAAAGIKVVCYNFMPVFDWTRTDLAYELPDGSTALRFDQIDFAAFDPHILKRPGAEADYGEEEIAQA 158 (385)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEecCcccccccCccccccCCCCchhhhcchhhHhhcCHHHhcccchhhcCCHHHHHHH
Confidence 3334444446677779999987665411111 0111 1 33447799999999
Q ss_pred HHHHHHHHHH-HHHhCCCeEEEccCCc-CcC---------CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccC-
Q 037393 234 AAQVKKAMEV-THYLGGENYVFWGGRE-GYQ---------SLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPK- 301 (503)
Q Consensus 234 i~~vkraiDi-a~eLGa~~~v~WgGrE-Gyd---------y~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPK- 301 (503)
.+..++.++. +.+||+..+..=+|.+ +|. .....+..+.|++++++|+.++.+|.+.|. +++|||-
T Consensus 159 ~~~f~~~~~~~~~~L~~~~i~~lpG~~~~~~~~~~~~~~~~y~~i~~e~lw~~l~~fL~~v~p~Aee~GV--~LaihPdD 236 (385)
T PRK03906 159 AARFAAMSEEDKARLTRNIIAGLPGWEEPYTLEQFRALLELYKDIDEEKLRENLAYFLKAIIPVAEEVGV--KMAIHPDD 236 (385)
T ss_pred HHHHHhCCHHHHHHhhccEEEeCCCCCccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC--EEEEeeCC
Confidence 9999999999 7888888777667733 211 233689999999999999999999999986 9999986
Q ss_pred CCCCCC--CCccccHHHHHHHHHHhCCCCCceeecccccccccC-CCHHHHHHHHHHcCCeeEEecCCCC
Q 037393 302 PQEPTK--HQYDWDAATAANFLRKYGLINDFKLNIECNHATLSG-HSCHHDIETARLNGLLGNIDANTGD 368 (503)
Q Consensus 302 P~EP~~--h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG-~n~ah~va~A~~~gkLg~ihlNdg~ 368 (503)
|-+|-. ..++.+......+++.++.|. +|+++|+||....+ .++...+.... +++.+||+.|.+
T Consensus 237 Pp~~~~Gl~riv~t~~d~~rll~~v~Sp~-~gl~lDtG~l~~~~e~D~~~~I~~~g--~RI~hvHlrdv~ 303 (385)
T PRK03906 237 PPRPIFGLPRIVSTEEDLQRLLDAVDSPA-NGLTLCTGSLGARPDNDLPAMIREFG--DRIHFAHLRNVK 303 (385)
T ss_pred ccccccccCceeCCHHHHHHHHHhcCCCc-eeEEEchhhhhhcCCCCHHHHHHHhh--hhEEEEeeccCc
Confidence 434422 247889999999999999765 99999999987765 48888777776 589999999975
No 29
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=98.83 E-value=4.8e-07 Score=92.72 Aligned_cols=189 Identities=11% Similarity=0.146 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHH----HHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKE----ANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e----~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.+..+++...+.|+..|=+-. +++|++.-++. .....++..+.+.++. ++|+++..= |..|.+ +.|
T Consensus 49 ~l~~~l~~~~~~~I~~~R~sS-~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~H-p~y~in-------L~S 119 (303)
T PRK02308 49 NLLRILKYNIAHGIGLFRLSS-SLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFH-PDQFVV-------LNS 119 (303)
T ss_pred HHHHHHHHHHHCCCCEEEccc-CcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeecc-Chhhhc-------CCC
Confidence 445566777788888777643 66776654321 0111122222344454 678854332 445544 788
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC---eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccC
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGE---NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPK 301 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~---~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPK 301 (503)
|+|+||+.++..+...++++..||++ .+|+=+|. .| .|..+.++++++.++.+.+.. +.++.||--
T Consensus 120 ~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~-~~-----~~ke~al~r~~~~l~~l~~~~-----~~~L~LEN~ 188 (303)
T PRK02308 120 PKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGG-AY-----GDKEKALERFIENIKKLPESI-----KKRLTLEND 188 (303)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCc-cC-----CCHHHHHHHHHHHHHHhhHHh-----CCEEEEeeC
Confidence 99999999999999999999999999 99999995 33 577889999999999997763 249999988
Q ss_pred CCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHH------HHHHHHHHcCCeeEEecCCCCC
Q 037393 302 PQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCH------HDIETARLNGLLGNIDANTGDP 369 (503)
Q Consensus 302 P~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~a------h~va~A~~~gkLg~ihlNdg~~ 369 (503)
++- ++...++.++++++. .|++|++|...+|-... ..+..-...+.+-.||+||.++
T Consensus 189 ~~~-------~t~~ell~I~e~~~i----pv~~D~hH~~~~g~~l~~~e~~~~~~~tw~~~~~~~~iHlsd~k~ 251 (303)
T PRK02308 189 DKT-------YTVEELLYICEKLGI----PVVFDYHHHMCNPDGESLEEALELAFETWEHEDLPPKVHISSPRE 251 (303)
T ss_pred CCC-------CCHHHHHHHHHHcCC----CEEEeHHhhhhcCCCCChHHHHHHHHHHhhccCCCeeEEeCCCCC
Confidence 774 789999999999974 49999999988886652 2222333345689999999754
No 30
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=98.74 E-value=2e-06 Score=85.86 Aligned_cols=223 Identities=17% Similarity=0.121 Sum_probs=161.4
Q ss_pred HHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccC---CCCCCCCHHHHH
Q 037393 155 FEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMH---GAATSSEVAVYA 231 (503)
Q Consensus 155 fe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~---GA~TnPD~~VRa 231 (503)
|+..++.|+.+|.|- +|...+.++..+.++ .+|+...-- |+-.. .+.. |-.+.|+..+=
T Consensus 21 f~aaa~aGF~~ve~l----fPyd~~~~~i~~~l~----------~~~L~~~Lf--n~pag-Dw~~gErg~aalp~r~~~- 82 (260)
T COG3622 21 FAAAAKAGFRGVEFL----FPYDYDAEELKARLD----------FNGLTQVLF--NLPAG-DWAAGERGIAALPGREEE- 82 (260)
T ss_pred HHHHHHcCCceEEEc----CCCcccHHHHHHHHH----------HcCCceeee--CCCCc-chhhhhcchhcCCCchHH-
Confidence 458899999999984 455555554433333 666653221 11121 2333 44677774432
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCcc
Q 037393 232 YAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311 (503)
Q Consensus 232 ~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~ 311 (503)
.-.-|-+|++.|..||++.+..=.|.- |-.+|-.+.|.-+++-|+-+++...+.|. +|+|||=-..-...-++
T Consensus 83 -fr~~v~~a~~ya~aLg~~~vh~mag~~----p~~~~~~~~~~t~venLr~aAd~l~~~gi--~~liEplN~~d~PG~~l 155 (260)
T COG3622 83 -FRLGVALAIEYATALGCKQVHCLAGIP----PEGVDTEAMWATFVENLRYAADLLAAEGI--RLLIEPLNLRDMPGYFL 155 (260)
T ss_pred -HHhHHHHHHHHHHHhCCCceeeeecCC----CCCccHHHHHHHHHHHHHHHHHHHHhcCC--EEEEecCCCCCCCCccc
Confidence 234466789999999999999999965 66799999999999999999999988876 99999977655557889
Q ss_pred ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHH
Q 037393 312 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLS 391 (503)
Q Consensus 312 ~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~ 391 (503)
.+...++..++++|.|| ++|++|+=|++--.=|..+-+.. ..++++||++-|--...--++.. +|-. .+..
T Consensus 156 ~~~~~al~li~~V~~~N-l~lq~D~YH~Q~~eGnL~~~lr~--~~~~ighvQiAdvP~RhEPgtGE--INY~----~lf~ 226 (260)
T COG3622 156 TSQEQALALIDEVGRPN-LFLQLDLYHAQIMEGNLTRLLRE--YLPKIGHVQIADVPGRHEPGTGE--INYP----YLFK 226 (260)
T ss_pred ccHHHHHHHHHHhCCCC-eEeehhHHHHHHhccHHHHHHHH--hhhhhceeeecCCCCCCCCCCCc--cccH----HHHH
Confidence 99999999999999997 99999999998877777664433 35889999998843222223322 2322 2445
Q ss_pred HHHhCCCCCCcccccccCcCC
Q 037393 392 VIKNGGLAPGGFNFDAKLRRE 412 (503)
Q Consensus 392 iLk~gG~~~Ggi~FDakprR~ 412 (503)
.|+.-| |+|||.--.||+-+
T Consensus 227 ~l~~~G-Y~GwIGcEy~p~g~ 246 (260)
T COG3622 227 ALDAMG-YDGWIGCEYKPRGD 246 (260)
T ss_pred HHHHcC-CCCceeeeeccCCC
Confidence 567777 59999999999876
No 31
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=3.7e-06 Score=83.76 Aligned_cols=247 Identities=18% Similarity=0.162 Sum_probs=171.3
Q ss_pred HHHHHhCCceecccCCCCCCCCCCHHHHHHhHH----HHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHH
Q 037393 156 EFIDKLGVDFWCFHDRDIAPDGETLKEANANLD----EVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYA 231 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~----~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa 231 (503)
.+-+++|++++++--+. -+|+..+|| ++..+.+++.++|+.+.+.. |-.|.||-.| |.|+.+|+
T Consensus 25 ~~AK~~GFDFvEmSvDE-------sDeRLaRLDWs~~er~~l~~ai~etgv~ipSmC--lSaHRRfPfG---S~D~~~r~ 92 (287)
T COG3623 25 ALAKELGFDFVEMSVDE-------SDERLARLDWSKEERLALVNAIQETGVRIPSMC--LSAHRRFPFG---SKDEATRQ 92 (287)
T ss_pred HHHHHcCCCeEEEeccc-------hHHHHHhcCCCHHHHHHHHHHHHHhCCCccchh--hhhhccCCCC---CCCHHHHH
Confidence 35667899999872211 123444443 35556677779999998864 5568888555 78999999
Q ss_pred HHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCcc
Q 037393 232 YAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYD 311 (503)
Q Consensus 232 ~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~ 311 (503)
+|....++||++|+.||-..+-+ -|||.-...--....+|+.++++.+++-|.+.++ .+++|- ....|+
T Consensus 93 ~aleiM~KaI~LA~dLGIRtIQL----AGYDVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV--~lAvEi-----MDtpfm 161 (287)
T COG3623 93 QALEIMEKAIQLAQDLGIRTIQL----AGYDVYYEEADEETRQRFIEGLKWAVELAARAQV--MLAVEI-----MDTPFM 161 (287)
T ss_pred HHHHHHHHHHHHHHHhCceeEee----ccceeeeccCCHHHHHHHHHHHHHHHHHHHhhcc--EEEeee-----cccHHH
Confidence 99999999999999999999887 5777655555567789999999999999999876 666653 345577
Q ss_pred ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCc--------CCHH
Q 037393 312 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFL--------TDIG 383 (503)
Q Consensus 312 ~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~--------~~~~ 383 (503)
.++.-.+...++++-|- |-|-+|+|...-=+-+...+ +.+-.+++..||+-|-+.-..=.-.||- +|..
T Consensus 162 ~sIsk~~~~~~~I~sP~-f~vYPDiGNlsaw~ndv~~E--l~lG~~~I~aiHlKDTy~vte~~~GqFrdvpfGeG~Vdf~ 238 (287)
T COG3623 162 NSISKWLKYDKYINSPW-FTVYPDIGNLSAWNNDVQSE--LQLGIDKIVAIHLKDTYAVTETSPGQFRDVPFGEGCVDFE 238 (287)
T ss_pred HHHHHHHHHHHHhCCCc-EEecCCcccHhhhhhhHHHH--HHcCcCceEEEEecccccccccCCCccccCCcCCcchhHH
Confidence 78999999999999986 99999999855444444444 4556788999999995433333345652 2443
Q ss_pred HHHHHHHHHHHhCCCCCCcccccccCcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 037393 384 EATSIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTA 437 (503)
Q Consensus 384 e~~~~m~~iLk~gG~~~Ggi~FDakprR~s~d~edl~~a~i~~md~~ar~l~~A 437 (503)
++ ...|+.-. |.|.+=...-. .+.|+....-+.+.+-+...++.|
T Consensus 239 ~~----f~~lk~~n-y~gpfLIEMWs----e~~ee~~~~i~~A~~~~~~~~~~A 283 (287)
T COG3623 239 EC----FKTLKQLN-YRGPFLIEMWS----ETAEEPVAEIIQARDWIEQRMKKA 283 (287)
T ss_pred HH----HHHHHHhC-CCCceehhhhh----hhhhhhHHHHHHHHHHHHHHHHHh
Confidence 33 33445543 46765433322 234555555566666655555444
No 32
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=98.64 E-value=4.7e-06 Score=88.44 Aligned_cols=165 Identities=11% Similarity=0.080 Sum_probs=123.8
Q ss_pred CHHHHHHHHHHHHHHH-HHHHHhCCCeEEEccC-CcCcC---------CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 037393 226 EVAVYAYAAAQVKKAM-EVTHYLGGENYVFWGG-REGYQ---------SLLNTDMGREIDHMANFFESAAAYKKKIGFKG 294 (503)
Q Consensus 226 D~~VRa~Ai~~vkrai-Dia~eLGa~~~v~WgG-rEGyd---------y~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~ 294 (503)
+++.|++|.+..++.+ +.+.+|++..+..=+| -++|. .-...|-.+.|+|++.||+.|+..|.+.|.
T Consensus 151 ~~e~~~~a~~~f~~~~~~~~~~L~~~ii~~lpGw~~~~~~~~~~~~~~~y~~i~~e~lwenl~yFL~~ViPvAEe~GV-- 228 (394)
T TIGR00695 151 NQEELIRAVEEASDMSEQDIAQLTRNIIAGLPGAEEGYTLDRFKELLAAYKDIDEEKLRDNLAFFLQEILPVAEEYGV-- 228 (394)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHhhhhhhhcCCCCCccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 5689999999999999 8899999988887777 33332 234689999999999999999999999987
Q ss_pred eEEecc-CCCCCCC--CCccccHHHHHHHHHHhCCCCCceeecccccccccC-CCHHHHHHHHHHcCCeeEEecCC----
Q 037393 295 NLLIEP-KPQEPTK--HQYDWDAATAANFLRKYGLINDFKLNIECNHATLSG-HSCHHDIETARLNGLLGNIDANT---- 366 (503)
Q Consensus 295 ~~~IEP-KP~EP~~--h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG-~n~ah~va~A~~~gkLg~ihlNd---- 366 (503)
+++|+| .|-+|-. -..+.+....-.+++.++-|. .|+|+.+|=....+ .++...+.... +++.+||+=+
T Consensus 229 ~LAiHPDDPP~~i~GlpRIvst~ed~~rll~~V~Spa-nGlt~CtGSlg~~~~ndl~~~i~~fg--~RI~fvH~Rnv~~~ 305 (394)
T TIGR00695 229 QMAIHPDDPPRPILGLPRIVSTIEDMQWLVATSDSPA-NGFTMCTGSYGVRPDNDLVEMAKQFA--GRIYFSHLRSTKRE 305 (394)
T ss_pred EEEECCCCCCccccCCCcccCCHHHHHHHHHhcCCcc-ccEEEEecccccCCCCCHHHHHHHHc--cceeEEEEeccccc
Confidence 999999 6666422 346777888888888898876 89999999776645 67777666653 7999999988
Q ss_pred CCCCCCCCCCC--CcCCHHHHHHHHHHHHHh
Q 037393 367 GDPQVGWDTDQ--FLTDIGEATSIMLSVIKN 395 (503)
Q Consensus 367 g~~q~Gwd~Dq--f~~~~~e~~~~m~~iLk~ 395 (503)
|+...=-.+.. =.+|.+++..+++..++.
T Consensus 306 g~~~~F~Ea~Hl~Gd~DM~~v~kall~~~~~ 336 (394)
T TIGR00695 306 ENPLTFHEAAHLTGDVDMNNVVKAVMEEEHR 336 (394)
T ss_pred CCCCCceecccCCCCccHHHHHHHHHHHhhh
Confidence 32100000111 135888888888877653
No 33
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=98.47 E-value=8.7e-06 Score=82.99 Aligned_cols=199 Identities=16% Similarity=0.123 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhCCceecccCCCC-CCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHH
Q 037393 151 MRANFEFIDKLGVDFWCFHDRDI-APDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAV 229 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~fHD~Dl-~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~V 229 (503)
+..+++...++|.+.+.+--.-- +=....+++.... ..++.++ +...+.+-+-++-| +.||++++
T Consensus 16 ~~~~~~~a~~iG~na~~if~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~i~vHApYlIN-------l~s~~~e~ 81 (280)
T COG0648 16 LVNAVERAREIGLNAFEIFLVNPRVWISPPLAEDAIE------LFKAALK-DDVQLSVHAPYLIN-------LASPEKEK 81 (280)
T ss_pred HHHHHHHHHHcCCCEEEEEecCcccccCCCchHHHHH------HHHHhhc-cCceEEeecceeec-------CCCCCHHH
Confidence 34566788999999998732220 1022233322211 1122213 23333333333333 78999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCC
Q 037393 230 YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ 309 (503)
Q Consensus 230 Ra~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~ 309 (503)
++++++.....++.|..||+..+||=||.= +- .+....+++++++|+++.+- +. ..+.+|.=-.|-+.-.
T Consensus 82 ~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~----~~-~~~e~~l~~i~~~Ln~~~~~-~~----v~i~~e~~agegs~~g 151 (280)
T COG0648 82 VEKSIERLIDEIDRCEQLGAKLLVFHPGSY----LG-QGKEEGLNRIAEALNELLEE-EG----VIILLENTAGEGSGKG 151 (280)
T ss_pred HHHHHHHHHHHHHHHHHcCCcEEEECCccc----cC-CCHHHHHHHHHHHHHHHhhc-cC----CeEEEEEeccccCccc
Confidence 999999999999999999999999999832 33 44899999999999999974 22 4889998777766422
Q ss_pred -ccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHH------HH-HHHHcC--CeeEEecCCCCCCCCCCCC
Q 037393 310 -YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHD------IE-TARLNG--LLGNIDANTGDPQVGWDTD 376 (503)
Q Consensus 310 -y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~------va-~A~~~g--kLg~ihlNdg~~q~Gwd~D 376 (503)
=.-+.+.++.. ....+++||+||++|++-+|.+.-.. +. +-..-| .+-++|+||-++-+|=.-|
T Consensus 152 ~~F~~L~eii~~---~~~~~~igvCiDtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlndsk~~~G~~kD 225 (280)
T COG0648 152 TQFGELAEIIDL---IEEKERIGVCIDTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDSKYPLGSNKD 225 (280)
T ss_pred cchhhHHHHHHh---hcccCceEEEEEchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCcccccccccc
Confidence 22334444444 44445799999999999999776552 21 112224 6889999999987776445
No 34
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=97.98 E-value=5.9e-05 Score=77.20 Aligned_cols=268 Identities=17% Similarity=0.231 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHH----HhHHHHHHHHHHHhcCCceeeeeccCCCCCccc
Q 037393 142 NSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEAN----ANLDEVVALAKELQGTKVRPLWGTAQLFSHPRY 217 (503)
Q Consensus 142 d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~----~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prf 217 (503)
.|-| .++.++.|+.++- |-..+.+|-.-+ +.++.-|++ +.+..-|+-.| ..|+.+-.. |.+||||.+
T Consensus 71 t~~e-LR~DLEkAlsLIP--G~~rlNLHAIY~--etd~~V~r~~ieP~HF~~WV~WAK---~~gLGLDFN-Pt~FSH~~~ 141 (419)
T COG4806 71 NAEE-LRADLEKALSLIP--GPKRLNLHAIYL--ESDTPVERDQIKPEHFKNWVEWAK---ANGLGLDFN-PTCFSHPLS 141 (419)
T ss_pred CHHH-HHHHHHHHHhhCC--CccccceeEEEe--cCCCcchhcccChhhhhHHHHHHH---hcCCCCccC-cccccCccc
Confidence 4444 5556665544431 555566654321 222332222 23444444444 444554454 999999999
Q ss_pred cCCC-CCCCCHHHHHHHHHHHHHHHHHHH----HhCCCe-EEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 037393 218 MHGA-ATSSEVAVYAYAAAQVKKAMEVTH----YLGGEN-YVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIG 291 (503)
Q Consensus 218 k~GA-~TnPD~~VRa~Ai~~vkraiDia~----eLGa~~-~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG 291 (503)
++|= +.+||++||+.=|++++.+-.++. +||..+ ..+|-- |||-- --.|.-.-.+||.++|.++.... +.
T Consensus 142 ~Dg~TLshpD~eiR~FWI~Hc~asRri~eYFGkeLgtp~~~NiWiP-DG~KD-~P~DRltPRkRL~eaLDev~sek--l~ 217 (419)
T COG4806 142 ADGFTLSHPDDEIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIP-DGMKD-IPVDRLAPRQRLLEALDEVISEK--LD 217 (419)
T ss_pred cCCccccCCCHHHHHHHHHHHHHHHHHHHHHHhhhCCCceeeeecC-CCccc-CcccccChHHHHHHHHHHHHHHh--cC
Confidence 9998 999999999999999999998864 577664 579998 99863 34555567788999999987642 32
Q ss_pred CCc-eEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCC
Q 037393 292 FKG-NLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQ 370 (503)
Q Consensus 292 ~~~-~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q 370 (503)
..- .=++|-|-+---.-+| +||+- -|---|++.+.--+++|+||.+-...----.-++++-..+| -+|..+ -
T Consensus 218 ~~~~~davESKLFGiGaEsY--~VGS~-EFYm~Ya~~~~k~~~LDaGHfHPTE~iSnKiSs~~L~~~~l-~LHVSR---P 290 (419)
T COG4806 218 PAHHIDAVESKLFGIGAESY--TVGSN-EFYMGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPKL-LLHVSR---P 290 (419)
T ss_pred hhhhhHHHHHHhhcccccee--eeccc-ceeehhhhccceeEeeccCCCCchhHHhHHHHHHHHhccce-eeeecc---c
Confidence 111 1144444432222222 12211 11112455566789999999653322222222333333332 355655 5
Q ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCC--cc-cccccCcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 037393 371 VGWDTDQFLTDIGEATSIMLSVIKNGGLAPG--GF-NFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTA 437 (503)
Q Consensus 371 ~Gwd~Dqf~~~~~e~~~~m~~iLk~gG~~~G--gi-~FDakprR~s~d~edl~~a~i~~md~~ar~l~~A 437 (503)
.-||.|...+=--++-++-.+|+++.-+..= |+ .||+..+|- .+-.-|-+.+.++|..|
T Consensus 291 VRWDSDHVV~~DDE~~eIa~EivR~~~~~~v~IGLDFFDAsINRi--------AAW~iGTRN~~KaLL~A 352 (419)
T COG4806 291 VRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRI--------AAWVIGTRNMKKALLRA 352 (419)
T ss_pred ccccCCeEEEechHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhh--------HhhhccchHHHHHHHHH
Confidence 6899998644234555777888887643211 33 358888884 23344445556666655
No 35
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.032 Score=58.11 Aligned_cols=162 Identities=13% Similarity=0.144 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHH---HHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKE---ANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e---~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnP 225 (503)
.+..+++...+.|+..|=+- .+++|++.-..- ....+.+....+.++. +.|++|-+= |..|.+ +.||
T Consensus 53 ~l~~~L~~n~~~~I~f~Ris-S~l~P~ash~~~~~~~~~~~~~~l~~iG~~a~~~~iRLS~H-p~qfi~-------LnS~ 123 (312)
T TIGR00629 53 DTMKTLHWNIGHGIPFYRFS-SSIFPFASHPDVGYDLVTFAQKELREIGELAKTHQHRLTFH-PGQFTQ-------FTSP 123 (312)
T ss_pred HHHHHHHHHHHcCCcEEecC-ccccCcCcCchhhhhHHHHHHHHHHHHHHHHHHcCeEEEEC-CCcccc-------CCCC
Confidence 34556667777788887764 567776643210 1112223333455666 889997665 555554 8899
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCC-------CeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEe
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGG-------ENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLI 298 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa-------~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~I 298 (503)
+++|++.++..+....++...||+ ..+||=+| || | .|-...++++.+.++.+-+.++ . ++.+
T Consensus 124 ~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~G--g~-~---gdk~~alerf~~n~~~L~~~i~-~----rL~l 192 (312)
T TIGR00629 124 RESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIG--GA-F---GNKDTTLARFHQNYKRLSQSIK-E----RLVL 192 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccC--cC-C---CCHHHHHHHHHHHHHHhhHHHH-h----cEEe
Confidence 999999999999999999999994 47778876 22 2 5889999999999999999873 2 7777
Q ss_pred ccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeeccccccccc
Q 037393 299 EPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLS 342 (503)
Q Consensus 299 EPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lA 342 (503)
|--=+- +++.-+|..+++++ +-+.+|+.|..+.
T Consensus 193 End~k~-------~sl~evL~lc~e~~----iP~v~D~hHh~~n 225 (312)
T TIGR00629 193 ENDDVT-------WTVEDLLPVCEELN----IPFVLDFHHHNIN 225 (312)
T ss_pred ccCCCc-------CCHHHHHHHHHhcC----CCEEEEhHHhhhC
Confidence 753322 78999999999988 5689999995544
No 36
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.091 Score=52.66 Aligned_cols=234 Identities=18% Similarity=0.159 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhCCceecc-cCCC--CCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF-HDRD--IAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f-HD~D--l~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnP 225 (503)
.+++.|.+.+.||+.-|++ +|.- -+-.|...+| +|+++ ++|+.+.++++=.= |--=
T Consensus 18 ~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~-----------vka~Aek~Gl~IvSINAlyp---------Fn~w 77 (272)
T COG4130 18 SVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAE-----------VKALAEKAGLTIVSINALYP---------FNEW 77 (272)
T ss_pred CHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHH-----------HHHHHHHcCcEEEEeecccc---------cccc
Confidence 3557889999999999998 4432 1213444443 24555 89999999975422 2223
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCC
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEP 305 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP 305 (503)
+++++++| ..-++.|+..||+.+|+-+=-||.- +.+. ...+.++++|+.+-.--.+.|. +=++||=-++-
T Consensus 78 t~~~~a~a----~~la~yA~acGA~aLvlcPlNd~s~-~~~~---vr~~~lv~AlkaLkpil~~~gi--~GLVEPLGF~~ 147 (272)
T COG4130 78 TEERVAEA----RGLADYAAACGAKALVLCPLNDGSW-PGTA---VRREDLVEALKALKPILDEYGI--TGLVEPLGFRV 147 (272)
T ss_pred ChHHHHHH----HHHHHHHHhcCCceEEEEeccCCCC-CCcc---cchHHHHHHHHHhhHHHHHhCc--cccccccCchh
Confidence 45555554 4457889999999999999888532 2222 2345666666666655555665 66888877764
Q ss_pred CCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCC-CC---CCCCCCC-CcC
Q 037393 306 TKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGD-PQ---VGWDTDQ-FLT 380 (503)
Q Consensus 306 ~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~-~q---~Gwd~Dq-f~~ 380 (503)
. -+-+-.-+...|+..|-+..|+|-.|+=|.+|+||+.-.. ..-|-||+-.-. +. ..|.+.+ .++
T Consensus 148 c---sLRsk~eA~~aI~aa~g~~~fklvhDTFHHhLagE~~ffp-------dlTGLVHiSgV~d~~~~~~dm~d~hRVlv 217 (272)
T COG4130 148 C---SLRSKAEAAEAIRAAGGERVFKLVHDTFHHHLAGETEFFP-------DLTGLVHISGVEDPRLDVEDMRDPHRVLV 217 (272)
T ss_pred h---hhhhHHHHHHHHHHhCCCceeeeehhhhhhhhcccceecc-------cccceeEecccCCCcccHhhhcCcceEEe
Confidence 2 2445666777888889888899999999999999987663 333555553310 00 1121111 111
Q ss_pred ---CHHHHHHHHHHHHHhCCCCCCcccccccCcC--CCCChHHHHHHHHH
Q 037393 381 ---DIGEATSIMLSVIKNGGLAPGGFNFDAKLRR--ESTDVEDLFIAHIV 425 (503)
Q Consensus 381 ---~~~e~~~~m~~iLk~gG~~~Ggi~FDakprR--~s~d~edl~~a~i~ 425 (503)
|..+-.-.+-. |++.| |.|.+.|--|..- +-.||++.+.+.|.
T Consensus 218 ~~~Drl~N~~Qir~-L~d~G-Y~Gp~sFePFa~~vhel~~~a~~l~esi~ 265 (272)
T COG4130 218 GEKDRLDNIAQIRR-LEDMG-YRGPYSFEPFASEVHELSDPAAALAESID 265 (272)
T ss_pred cCccccccHHHHHH-HHhcC-cCCccccCcchhhhccccChHHHHHHHHH
Confidence 22222122233 45666 4899998544321 22366666655443
No 37
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=96.69 E-value=0.025 Score=56.67 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=106.5
Q ss_pred cccCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 037393 216 RYMHGA----ATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIG 291 (503)
Q Consensus 216 rfk~GA----~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG 291 (503)
.--||+ +.|||++-++++..-...-+.-|.+||--.|.|-||. ....+-..-+..+++-+..+++..+..
T Consensus 67 ivpHGsYliN~~npd~ek~eks~~~~vDdl~Rce~LGIgmYN~HPGS-----t~~~~kee~l~~ia~~in~a~eetk~V- 140 (281)
T KOG3997|consen 67 IVPHGSYLINAGNPDAEKLEKSRECFVDDLQRCEKLGIGMYNFHPGS-----TVGKEKEECLTTIAETINFAVEETKNV- 140 (281)
T ss_pred cccccchhcccCCccHHHHHHHHHHHHHHHHHHHHhCceeeecCCCc-----cccccHHHHHHHHHHHHHHHHHhccce-
Confidence 344566 7899999999999999999999999999999999993 455678888888888888888765433
Q ss_pred CCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHH---------HHcCCeeEE
Q 037393 292 FKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETA---------RLNGLLGNI 362 (503)
Q Consensus 292 ~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A---------~~~gkLg~i 362 (503)
.+.+|-=...- ...=.+....-..+.++...+++||+||++|..-||-++--+-+.- .-..-|-.+
T Consensus 141 ---~ivlEnMAGqG--n~vG~tfeelk~ii~~Ikdk~RigVClDTCH~FaaGyDI~Tee~y~evmkeFdevVG~kylka~ 215 (281)
T KOG3997|consen 141 ---IIVLENMAGQG--NSVGGTFEELKFIIGKIKDKSRIGVCLDTCHTFAAGYDIRTEEAYEEVMKEFDEVVGWKYLKAI 215 (281)
T ss_pred ---EEEeecccCCC--CcccccHHHHHHHHHhhcchhhheeeHhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhhe
Confidence 88888654432 2221222222223355566678999999999888887654332221 112336789
Q ss_pred ecCCCCCCCCCCCCC
Q 037393 363 DANTGDPQVGWDTDQ 377 (503)
Q Consensus 363 hlNdg~~q~Gwd~Dq 377 (503)
|+||.+.-+|-.-|-
T Consensus 216 HiNDSK~~lGskrD~ 230 (281)
T KOG3997|consen 216 HINDSKAPLGSKRDR 230 (281)
T ss_pred eecCcccccccccch
Confidence 999988777766663
No 38
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=96.13 E-value=0.19 Score=49.52 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCC
Q 037393 146 MAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLF 212 (503)
Q Consensus 146 ~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF 212 (503)
.....++.++++.++||++.+..+.... |.+.+.++..+++.+....+.++. +.||++..-+-|.+
T Consensus 82 ~~~~~~~~~i~~a~~lga~~i~~~~g~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~ 148 (258)
T PRK09997 82 EFRDGVAAAIRYARALGNKKINCLVGKT-PAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHF 148 (258)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCc
Confidence 3445688899999999999987765442 455555555445544333444444 88999888765543
No 39
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=95.80 E-value=0.5 Score=48.60 Aligned_cols=183 Identities=14% Similarity=0.178 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCH------H-HHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETL------K-EANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGA 221 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~------~-e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA 221 (503)
.+..+++...+-|+..|=+- .+++|++..+ . +....++ .+.++. ++|++|-+= |+=|. -
T Consensus 46 ~l~~~L~~n~~~~I~~yRis-S~liP~ashp~~~~~~~~~~~~~l~----~iG~~~~~~~iRls~H-P~qf~-------v 112 (275)
T PF03851_consen 46 DLLRILEYNIAHGIRFYRIS-SDLIPLASHPEVGWDWEEEFAEELA----EIGDLAKENGIRLSMH-PDQFT-------V 112 (275)
T ss_dssp HHHHHHHHHHHTT--EEE---TTSSTTTTSTT--S-HHHHHHHHHH----HHHHHHHHTT-EEEE----TT---------
T ss_pred HHHHHHHHHHHcCCCEEecC-cccCCCCCCcccccchHHHHHHHHH----HHHHHHHHcCCeEEec-CCcce-------e
Confidence 34556677778898888776 4888865543 2 3333444 345555 889998764 44333 3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCC-----eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceE
Q 037393 222 ATSSEVAVYAYAAAQVKKAMEVTHYLGGE-----NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNL 296 (503)
Q Consensus 222 ~TnPD~~VRa~Ai~~vkraiDia~eLGa~-----~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~ 296 (503)
+.||+++|.+.|++-+.--.++...||.. .+++=.|- -| .|-.+.++||++.++.+=+.+++ ++
T Consensus 113 LnSp~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG-~Y-----gdK~~al~RF~~~~~~L~~~ir~-----rL 181 (275)
T PF03851_consen 113 LNSPREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGG-VY-----GDKEAALERFIENFKRLPESIRK-----RL 181 (275)
T ss_dssp TT-SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE-----S-----S-HHHHHHHHHHHHHT--HHHHT-----TE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCC-CC-----CChHHHHHHHHHHHhhCCHhhhh-----cE
Confidence 88999999999999999999999999964 46777771 22 58889999999999999888776 89
Q ss_pred EeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeeccccccccc---CCCHHHH-----HHHHHHcCC--eeEEecCC
Q 037393 297 LIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLS---GHSCHHD-----IETARLNGL--LGNIDANT 366 (503)
Q Consensus 297 ~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lA---G~n~ah~-----va~A~~~gk--Lg~ihlNd 366 (503)
.||=.=+ -+++..+|..++++|.| |-.|+=|..+. +...... .+.+-|.++ -=-||+-+
T Consensus 182 ~lENDd~-------~yt~~d~L~ic~~~giP----~VfD~hHh~~~~~~~~~l~~~~~~~~~~~~TW~~~~~~pk~H~Ss 250 (275)
T PF03851_consen 182 TLENDDK-------TYTVEDVLPICEKLGIP----MVFDYHHHRCNPPDEESLDEALPLLERILATWKRRGIRPKIHYSS 250 (275)
T ss_dssp EEE--SS-------S--HHHHHHHHHHHT------EEEEHHHHHHS--TT--HHHHHH---HHGGG-SSS----EEEE--
T ss_pred EEecCCC-------ccCHHHHHHHHHHhCCC----EEEEhHHhhcCCCCCcccchhhhHHHHHHhcccCCCCCceEEeCC
Confidence 9996443 27899999999999954 88899887776 2233222 233344433 35577766
Q ss_pred C
Q 037393 367 G 367 (503)
Q Consensus 367 g 367 (503)
+
T Consensus 251 p 251 (275)
T PF03851_consen 251 P 251 (275)
T ss_dssp B
T ss_pred C
Confidence 4
No 40
>PRK09989 hypothetical protein; Provisional
Probab=94.75 E-value=1.2 Score=43.89 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCC
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAA 222 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~ 222 (503)
.+.+.+.++.++++.++||.+++-.|-.- .|.+.+.++..+++.+-...+.+.. +.|+++.--+.+...++.| +
T Consensus 80 ~~~~~~~l~~~i~~A~~lg~~~v~v~~g~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~----~ 154 (258)
T PRK09989 80 EHEARADIDLALEYALALNCEQVHVMAGV-VPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHY----L 154 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCcCEEEECccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCC----c
Confidence 34455678899999999999999766443 3455554443333332222333333 7899887665443333322 2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeE
Q 037393 223 TSSEVAVYAYAAAQVKKAMEVTHYLGGENY 252 (503)
Q Consensus 223 TnPD~~VRa~Ai~~vkraiDia~eLGa~~~ 252 (503)
.+ ....+.++.++++.+++
T Consensus 155 ~~-----------~~~~~~~ll~~v~~~~v 173 (258)
T PRK09989 155 FS-----------SQYQALAIVEEVARDNV 173 (258)
T ss_pred cC-----------CHHHHHHHHHHcCCCCe
Confidence 22 23345556666666554
No 41
>TIGR03356 BGL beta-galactosidase.
Probab=93.59 E-value=1.6 Score=47.06 Aligned_cols=149 Identities=21% Similarity=0.243 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc--CCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM--HGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk--~GA~TnP 225 (503)
+.++=+++|+++|++.+-| --.-+.|.|.. .-+++-++..-+.+.++.+.||++. +|-.-|..|... .|+++||
T Consensus 55 ~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~-~~n~~~~~~y~~~i~~l~~~gi~pi-vtL~Hfd~P~~l~~~gGw~~~ 132 (427)
T TIGR03356 55 RYEEDVALMKELGVDAYRFSIAWPRIFPEGTG-PVNPKGLDFYDRLVDELLEAGIEPF-VTLYHWDLPQALEDRGGWLNR 132 (427)
T ss_pred hHHHHHHHHHHcCCCeEEcccchhhcccCCCC-CcCHHHHHHHHHHHHHHHHcCCeeE-EeeccCCccHHHHhcCCCCCh
Confidence 4445567999999999988 55677788543 1223334444456777779999864 567778888762 3999995
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEc------------cCCcCcCCCCCCC---HHHHHHHHHHHHHHHHHHHHhc
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFW------------GGREGYQSLLNTD---MGREIDHMANFFESAAAYKKKI 290 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~W------------gGrEGydy~~qtD---~~~~~d~l~e~l~~v~dya~~i 290 (503)
+ +.+.=++.++.+. +++|.. +.+| +...|...|...+ .-+...++..+=..+++..+++
T Consensus 133 ~--~~~~f~~ya~~~~---~~~~d~-v~~w~t~NEp~~~~~~~y~~G~~~P~~~~~~~~~~~~hnll~Aha~A~~~~~~~ 206 (427)
T TIGR03356 133 D--TAEWFAEYAAVVA---ERLGDR-VKHWITLNEPWCSAFLGYGLGVHAPGLRDLRAALQAAHHLLLAHGLAVQALRAN 206 (427)
T ss_pred H--HHHHHHHHHHHHH---HHhCCc-CCEEEEecCcceecccchhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 5555566666654 666642 2222 3334433344333 2367778888888888888887
Q ss_pred CCCceEEe--ccCCCCCC
Q 037393 291 GFKGNLLI--EPKPQEPT 306 (503)
Q Consensus 291 G~~~~~~I--EPKP~EP~ 306 (503)
..+++|.| -.-|.+|.
T Consensus 207 ~~~~~IGi~~~~~~~~P~ 224 (427)
T TIGR03356 207 GPGAQVGIVLNLTPVYPA 224 (427)
T ss_pred CCCCeEEEEEeCCeeeeC
Confidence 77767654 33344443
No 42
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=92.84 E-value=4.6 Score=39.49 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccC
Q 037393 142 NSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQ 210 (503)
Q Consensus 142 d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tan 210 (503)
++.+...+.++.++++.++||.+.+.++-.- .|...+.++..+.+.+.+..+.+++ +.||++..-+-|
T Consensus 77 ~~~~~~~~~~~~~i~~a~~lg~~~i~~~~g~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~ 145 (254)
T TIGR03234 77 GREEEFREGVALAIAYARALGCPQVNCLAGK-RPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPIN 145 (254)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCEEEECcCC-CCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 3444455678889999999999998775332 2444445554444333333334455 889998887544
No 43
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=91.93 E-value=5.5 Score=39.96 Aligned_cols=163 Identities=18% Similarity=0.118 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccH
Q 037393 235 AQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDA 314 (503)
Q Consensus 235 ~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dv 314 (503)
.++-.+||.|+.|||..+.+=.|+- +-..|...+-.-+-+-|+.+++--++. ++-=+|||=-+=--..-|+.+-
T Consensus 86 ~~Ld~ai~yAkalgC~rIHlmAG~~----k~g~d~~~~~~ty~eNlr~AA~~l~~~--kligliEPINkyt~PgY~ln~y 159 (264)
T KOG4518|consen 86 KSLDTAIEYAKALGCCRIHLMAGIP----KSGDDLENAHQTYSENLRFAAEKLKEH--KLIGLIEPINKYTIPGYHLNNY 159 (264)
T ss_pred HHHHHHHHHHHHhCCceEEEeccCC----CCCchHHHHHHHHHHHHHHHHHHhhhh--ceeeeecchhcccCcchhcCCH
Confidence 3556789999999999999999976 666788888888889999888865554 3456899976443335567888
Q ss_pred HHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Q 037393 315 ATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIK 394 (503)
Q Consensus 315 gt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk 394 (503)
..+.+.++.++.+| +++..|+=|++--.-|.--.+.-.. ..+|||+.-+--...--|+..- .|. -++...|+
T Consensus 160 ~~Aa~Ilq~v~~~N-lqlq~D~fH~Q~~~Gni~~~~re~k--~~iGhiQvAQVP~Rgepd~~GE-ldy----~fiF~~l~ 231 (264)
T KOG4518|consen 160 EDAADILQMVQSNN-LQLQYDTFHAQQINGNIGAIMRELK--DYIGHIQVAQVPNRGEPDTRGE-LDY----HFIFDELR 231 (264)
T ss_pred HHHHHHHHHhcCCc-eehhHHHHHHHHhcChHHHHHHHHH--HhhceeeeeecCCCCCCCCCCc-ccc----HHHHHHHH
Confidence 88999999999876 9999999998766666655444433 4588998755211111111110 011 23344567
Q ss_pred hCCCCCCcccccccCcCC
Q 037393 395 NGGLAPGGFNFDAKLRRE 412 (503)
Q Consensus 395 ~gG~~~Ggi~FDakprR~ 412 (503)
.-| |+|++.=..||+-.
T Consensus 232 ~~g-y~g~iGcEYkPk~d 248 (264)
T KOG4518|consen 232 SIG-YSGVIGCEYKPKLD 248 (264)
T ss_pred HhC-CCceeeeeeccCcC
Confidence 666 48999999898765
No 44
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=89.52 E-value=6.7 Score=43.04 Aligned_cols=140 Identities=16% Similarity=0.158 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc--CCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM--HGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk--~GA~TnP 225 (503)
|.++=+++|++||++.+-| --.-|.|.|.. +-+++-++-.-+++.+|.+.||+ .++|-.-|..|... .|+++|+
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~-~~N~~gl~~Y~~lid~l~~~GI~-P~VTL~H~dlP~~L~~~GGW~n~ 131 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYG-EVNEKGVEFYHKLFAECHKRHVE-PFVTLHHFDTPEALHSNGDFLNR 131 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCC-CcCHHHHHHHHHHHHHHHHcCCE-EEEeccCCCCcHHHHHcCCCCCH
Confidence 4444457999999999888 67778888653 23444566555677888899999 68899999999764 5999985
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC--------Cc----CcCCCCCCC----HHHHHHHHHHHHHHHHHHHHh
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG--------RE----GYQSLLNTD----MGREIDHMANFFESAAAYKKK 289 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--------rE----Gydy~~qtD----~~~~~d~l~e~l~~v~dya~~ 289 (503)
+ +-..=++.++.|. +++| + |..|.- .. |.--|...+ .-+...++..+=..+++..++
T Consensus 132 ~--~v~~F~~YA~~~f---~~fg-d-Vk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~a~hn~l~AHa~A~~~~~~ 204 (467)
T TIGR01233 132 E--NIEHFIDYAAFCF---EEFP-E-VNYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVSHARAVKLYKD 204 (467)
T ss_pred H--HHHHHHHHHHHHH---HHhC-C-CCEEEEecchhhhhhccchhcccCCCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 5555556666654 6788 6 888853 12 322222211 235667777777788888788
Q ss_pred cCCCceEEe
Q 037393 290 IGFKGNLLI 298 (503)
Q Consensus 290 iG~~~~~~I 298 (503)
++.+++|.|
T Consensus 205 ~~~~~~IGi 213 (467)
T TIGR01233 205 KGYKGEIGV 213 (467)
T ss_pred hCCCCeEEE
Confidence 777777754
No 45
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=88.05 E-value=26 Score=35.11 Aligned_cols=180 Identities=17% Similarity=0.186 Sum_probs=121.3
Q ss_pred HHHHHHHhCCceecc----cCCCCCCCCCCHHHHH----------HhHHHHHH-HHHHHhcCCceeeeeccCCCCCcccc
Q 037393 154 NFEFIDKLGVDFWCF----HDRDIAPDGETLKEAN----------ANLDEVVA-LAKELQGTKVRPLWGTAQLFSHPRYM 218 (503)
Q Consensus 154 afe~l~kLG~~~~~f----HD~Dl~P~g~t~~e~~----------~nl~~i~~-~lk~l~~tGvkl~~~tanlF~~prfk 218 (503)
.|++|++-|+..++| |-+.+.+.-.|+.... ++=+.+.. .+.++.+.|+++...+ .+..+=--.
T Consensus 4 ~i~~lk~~gv~~vvmaG~v~rp~~~~~~~D~~~~~~l~~~~~~l~~gDd~lL~av~~~le~~G~~vv~~~-~~~p~Ll~~ 82 (214)
T PF06230_consen 4 IIKFLKREGVTRVVMAGKVKRPIFSDLRPDWRALKLLPRLLKALDRGDDALLRAVIDELEKEGFKVVGAH-EYLPDLLAP 82 (214)
T ss_pred HHHHHHHcCCCEEEEeecccCccccccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCEEEcHH-HhhHHhcCC
Confidence 567999999999999 7777777777764332 22222322 3344449999998763 222222224
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhC----CCeEEEccC-------CcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037393 219 HGAATSSEVAVYAYAAAQVKKAMEVTHYLG----GENYVFWGG-------REGYQSLLNTDMGREIDHMANFFESAAAYK 287 (503)
Q Consensus 219 ~GA~TnPD~~VRa~Ai~~vkraiDia~eLG----a~~~v~WgG-------rEGydy~~qtD~~~~~d~l~e~l~~v~dya 287 (503)
.|-+|.+-|+-. ..+-+..+++++++|| |..+|+=.| .||+| +.|+.+.+..
T Consensus 83 ~G~lt~~~p~~~--~~~Di~~g~~ia~~lg~lDiGQ~vVV~~g~VlAVEa~EGTD---------------~~i~R~~~l~ 145 (214)
T PF06230_consen 83 EGVLTGRKPSKE--ELADIEFGFEIAKALGRLDIGQAVVVKDGRVLAVEAIEGTD---------------AMIRRAGELR 145 (214)
T ss_pred CccccCCCCCHH--HHHHHHHHHHHHHHhcccCCCceEEEECCEEEEEeccccHH---------------HHHHHHHHhc
Confidence 577887666543 4566788999999988 355666555 46654 5666666665
Q ss_pred HhcCCCceEEeccCCCCCCCCCccccHHH-HHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCC
Q 037393 288 KKIGFKGNLLIEPKPQEPTKHQYDWDAAT-AANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGL 358 (503)
Q Consensus 288 ~~iG~~~~~~IEPKP~EP~~h~y~~dvgt-~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gk 358 (503)
+ .+-++.+.==|||+.- .+..+|++|. |+.-+.+.|+ -++-+|.|+.++.. .+.-++.|-.+|.
T Consensus 146 ~-~~~~~VlvK~~Kp~QD-~R~DlPtIG~~Tv~~~~~ag~---~~laveAg~tl~ld--~~~~i~~Ad~~gi 210 (214)
T PF06230_consen 146 G-KGKGGVLVKVPKPGQD-LRFDLPTIGPDTVENAAEAGL---AGLAVEAGKTLILD--REEVIALADKAGI 210 (214)
T ss_pred C-CCCCEEEEEccCCCCc-ccccccccCHHHHHHHHHcCC---eEEEEecCcEEEec--HHHHHHHHHHcCC
Confidence 5 2334577778999873 3456788885 7888888997 49999999988876 4666777777765
No 46
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=86.63 E-value=30 Score=34.27 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeec
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGT 208 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~t 208 (503)
-+.+.++++.+++..++||+++++++-.+ .|.+.+.++..+++.+..+.+.+++ +.||++..-|
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYD-VYYEQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcc-ccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 34556678889999999999999997543 2233444444444443333444455 7899888775
No 47
>PLN02849 beta-glucosidase
Probab=86.20 E-value=10 Score=42.17 Aligned_cols=141 Identities=15% Similarity=0.191 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATS 224 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~Tn 224 (503)
|.++=+++|++||++.+-| -=.-|.|.|.. +-+++-++-.-+++.+|.+.||+ .++|-.-|..|.+. .|+++|
T Consensus 80 rY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g-~vN~~gl~fY~~lid~l~~~GI~-P~VTL~H~dlP~~L~~~yGGW~n 157 (503)
T PLN02849 80 KYKEDVKLMVETGLDAFRFSISWSRLIPNGRG-SVNPKGLQFYKNFIQELVKHGIE-PHVTLFHYDHPQYLEDDYGGWIN 157 (503)
T ss_pred hHHHHHHHHHHcCCCeEEEeccHHhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCe-EEEeecCCCCcHHHHHhcCCcCC
Confidence 4444557999999998888 77778888653 23455566666678888899999 47899999999864 499999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC------------CcCcCCCCCC--------------CHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG------------REGYQSLLNT--------------DMGREIDHMAN 278 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG------------rEGydy~~qt--------------D~~~~~d~l~e 278 (503)
++ +-..=++.++.| .+++| +.|..|.- ..|.-.|... ..-+...++.-
T Consensus 158 r~--~v~~F~~YA~~~---f~~fg-DrVk~WiT~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~~~~~~~~~a~hn~ll 231 (503)
T PLN02849 158 RR--IIKDFTAYADVC---FREFG-NHVKFWTTINEANIFTIGGYNDGITPPGRCSSPGRNCSSGNSSTEPYIVGHNLLL 231 (503)
T ss_pred ch--HHHHHHHHHHHH---HHHhc-CcCCEEEEecchhhhhhchhhhccCCCCccccccccccccchhHHHHHHHHHHHH
Confidence 87 333333444443 44555 34444421 2233222211 13355666666
Q ss_pred HHHHHHHHHHhcC---CCceEEe
Q 037393 279 FFESAAAYKKKIG---FKGNLLI 298 (503)
Q Consensus 279 ~l~~v~dya~~iG---~~~~~~I 298 (503)
+=..+++..+++. .+++|.|
T Consensus 232 AHa~A~~~~~~~~~~~~~~~IGi 254 (503)
T PLN02849 232 AHASVSRLYKQKYKDMQGGSIGF 254 (503)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEE
Confidence 6666666655541 3456655
No 48
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=83.90 E-value=13 Score=40.65 Aligned_cols=108 Identities=18% Similarity=0.236 Sum_probs=72.7
Q ss_pred CCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 037393 174 APDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYV 253 (503)
Q Consensus 174 ~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v 253 (503)
.++|.++++...-|+ ..| ++|++|..+. |--|+ +-+|++.+..|+...+.-.|.+.++|-+...
T Consensus 186 ~KFG~~~~~~~~lLd----~ak---~l~lnvvGvs--------fHvGS-gc~d~~~y~~Ai~dAr~vfd~g~e~Gf~m~~ 249 (448)
T KOG0622|consen 186 LKFGCSLDNCRHLLD----MAK---ELELNVVGVS--------FHVGS-GCTDLQAYRDAISDARNVFDMGAELGFEMDI 249 (448)
T ss_pred CccCCCHHHHHHHHH----HHH---HcCceEEEEE--------EEecC-CCCCHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 468888885544444 344 5578877762 33344 5579999999999999999999999998544
Q ss_pred EccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccC
Q 037393 254 FWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPK 301 (503)
Q Consensus 254 ~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPK 301 (503)
|=-| -|+ +...+..-..+-..+.++.+.|--=.-| +.+|..||=
T Consensus 250 LdiG-GGf--~g~~~~~~~fe~i~~~In~ald~~Fp~~-~v~iiaEpG 293 (448)
T KOG0622|consen 250 LDIG-GGF--PGDEGHAVVFEEIADVINTALDLYFPSG-GVDIIAEPG 293 (448)
T ss_pred eecC-CCC--CCccchhhhhhhHHHHHHHHHHHhCCCC-CceEEeccc
Confidence 4333 333 2223334567788888888887433333 558888874
No 49
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=83.18 E-value=15 Score=40.45 Aligned_cols=142 Identities=11% Similarity=0.151 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATS 224 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~Tn 224 (503)
|.++=+++|++||++.+-| --.-|.|.|..-.-+++-++-.-+++.++.+.||++ ++|-..|..|.+- .|++.|
T Consensus 72 ry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p-~VtL~H~~~P~~l~~~~GGW~~ 150 (474)
T PRK09852 72 RYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEP-LVTLCHFDVPMHLVTEYGSWRN 150 (474)
T ss_pred hhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEE-EEEeeCCCCCHHHHHhcCCCCC
Confidence 3444556999999998888 777788887532124455555556778888999985 7889999999874 499999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC--------CcCc-----CCCCCCC----HHHHHHHHHHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG--------REGY-----QSLLNTD----MGREIDHMANFFESAAAYK 287 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--------rEGy-----dy~~qtD----~~~~~d~l~e~l~~v~dya 287 (503)
++ +-..=++.++.| .+++|. .|..|.- .-|| .++...+ .-+...++.-+=..+++..
T Consensus 151 ~~--~~~~F~~ya~~~---~~~fgd-~Vk~WiTfNEPn~~~~~gy~~~g~~~~p~~~~~~~~~~~~hn~llAHa~A~~~~ 224 (474)
T PRK09852 151 RK--MVEFFSRYARTC---FEAFDG-LVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHELVASALATKIA 224 (474)
T ss_pred HH--HHHHHHHHHHHH---HHHhcC-cCCeEEeecchhhhhccCccccCcccCCCCCchHhHHHHHHHHHHHHHHHHHHH
Confidence 55 333334444433 556663 4444422 1123 2222211 2345666666667777766
Q ss_pred HhcCCCceEEe
Q 037393 288 KKIGFKGNLLI 298 (503)
Q Consensus 288 ~~iG~~~~~~I 298 (503)
+++..+++|.|
T Consensus 225 ~~~~~~~~IGi 235 (474)
T PRK09852 225 HEVNPQNQVGC 235 (474)
T ss_pred HHhCCCCeEEE
Confidence 77666656544
No 50
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=82.90 E-value=20 Score=39.59 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATS 224 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~Tn 224 (503)
|.++=+++|++||++.+-| -=.-|.|.|..-.-+++-|+-.-+++.+|.+.||+ .++|-.-|..|... .|+++|
T Consensus 74 ry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~-P~VTL~H~dlP~~L~~~~GGW~n 152 (478)
T PRK09593 74 HYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIE-PLVTITHFDCPMHLIEEYGGWRN 152 (478)
T ss_pred hhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecccCCCHHHHhhcCCCCC
Confidence 4444456999999998888 77888998753212344555555677888899998 57889999999864 499999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEcc-----------CC--cCcCCCCCC----CHHHHHHHHHHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWG-----------GR--EGYQSLLNT----DMGREIDHMANFFESAAAYK 287 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~Wg-----------Gr--EGydy~~qt----D~~~~~d~l~e~l~~v~dya 287 (503)
++ +...=++.++.| .+++|- .|..|. |. -|..++... ..-+...++.-+=..+++..
T Consensus 153 ~~--~v~~F~~YA~~~---~~~fgd-rVk~WiT~NEP~~~~~~~~~~~g~~~~~g~~~~~~~~~a~h~~llAHa~A~~~~ 226 (478)
T PRK09593 153 RK--MVGFYERLCRTL---FTRYKG-LVKYWLTFNEINMILHAPFMGAGLYFEEGENKEQVKYQAAHHELVASAIATKIA 226 (478)
T ss_pred hH--HHHHHHHHHHHH---HHHhcC-cCCEEEeecchhhhhcccccccCcccCCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 76 434444444444 456663 333332 21 232222211 12355667777777777777
Q ss_pred HhcCCCceEEe
Q 037393 288 KKIGFKGNLLI 298 (503)
Q Consensus 288 ~~iG~~~~~~I 298 (503)
++.+.+++|.|
T Consensus 227 ~~~~~~g~VGi 237 (478)
T PRK09593 227 HEVDPENKVGC 237 (478)
T ss_pred HHhCCCCeEEE
Confidence 77666666644
No 51
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=81.14 E-value=25 Score=38.75 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATS 224 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~Tn 224 (503)
|-++=+++|++||++.+-| -=.-|.|.|..-.-+++-|+-.-+++.+|.+.||+ .++|-.-|..|..- .|+++|
T Consensus 68 ry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~-P~VTL~H~dlP~~L~~~yGGW~n 146 (476)
T PRK09589 68 RYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIE-PVVTLSHFEMPYHLVTEYGGWRN 146 (476)
T ss_pred hhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCE-EEEEecCCCCCHHHHHhcCCcCC
Confidence 4444556999999998887 77788898753212345566555677888899998 57899999999754 499999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEcc----------------C-C-cCcCCCCCCC----HHHHHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWG----------------G-R-EGYQSLLNTD----MGREIDHMANFFES 282 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~Wg----------------G-r-EGydy~~qtD----~~~~~d~l~e~l~~ 282 (503)
++ +...=++.++.| .+++|- .|..|. | . .|..++...+ .-+...++..+=..
T Consensus 147 ~~--~i~~F~~YA~~~---f~~fgd-rVk~WiT~NEp~~~~~~~~~~~~~~~~g~~~~pg~~~~~~~~~~~h~~llAha~ 220 (476)
T PRK09589 147 RK--LIDFFVRFAEVV---FTRYKD-KVKYWMTFNEINNQANFSEDFAPFTNSGILYSPGEDREQIMYQAAHYELVASAL 220 (476)
T ss_pred hH--HHHHHHHHHHHH---HHHhcC-CCCEEEEecchhhhhccccccCCccccccccCCCCchhHHHHHHHHHHHHHHHH
Confidence 75 444444555554 445663 333331 1 1 2322222111 23555666666667
Q ss_pred HHHHHHhcCCCceEE
Q 037393 283 AAAYKKKIGFKGNLL 297 (503)
Q Consensus 283 v~dya~~iG~~~~~~ 297 (503)
+++..++++.+++|.
T Consensus 221 A~~~~~~~~~~~~iG 235 (476)
T PRK09589 221 AVKTGHEINPDFQIG 235 (476)
T ss_pred HHHHHHHhCCCCcEE
Confidence 777777766666664
No 52
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=80.74 E-value=32 Score=36.92 Aligned_cols=191 Identities=15% Similarity=0.120 Sum_probs=110.0
Q ss_pred HHHHh-CCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 157 FIDKL-GVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 157 ~l~kL-G~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
.+++. |+.++-.+-++ .|.|..|. .+.+.+ +.+...+.|+++..+- ++--+..-|.|. |+ |..-|+
T Consensus 19 ~irQ~~Gv~giV~al~~-~p~g~~W~--~e~i~~---~k~~ie~~GL~~~vIE-svpv~e~IklG~---~~---RD~~Ie 85 (351)
T PF03786_consen 19 DIRQQPGVTGIVTALHD-IPNGEVWD--YEEIRA---LKERIEAAGLTLSVIE-SVPVHEDIKLGL---PG---RDEEIE 85 (351)
T ss_dssp HHCTSTTEEEEEE--SS-S-TTS-----HHHHHH---HHHHHHCTT-EEEEEE-S----HHHHCT----TT---HHHHHH
T ss_pred HHHHhcCCCCeeeCCCC-CCCCCCCC--HHHHHH---HHHHHHHcCCeEEEEe-cCChHHHHhcCC---Cc---HHHHHH
Confidence 36664 99999887666 45566665 223333 3344448999987764 222233445554 33 778999
Q ss_pred HHHHHHHHHHHhCCCeE--EE-----c-------cCCcCcCCC-------------------------------------
Q 037393 236 QVKKAMEVTHYLGGENY--VF-----W-------GGREGYQSL------------------------------------- 264 (503)
Q Consensus 236 ~vkraiDia~eLGa~~~--v~-----W-------gGrEGydy~------------------------------------- 264 (503)
..++.|+-..++|-+.+ .| | .+|+|..++
T Consensus 86 ny~~~Irnlg~~GI~vvcYNFMPv~dWtRT~l~~~~rgGa~~l~Fd~~~~~~~d~~il~~~~a~~~~~lPg~~~~~~~~~ 165 (351)
T PF03786_consen 86 NYKQTIRNLGKAGIKVVCYNFMPVFDWTRTDLAYPLRGGATALRFDHDDFAAFDPHILKRPGAEADYTLPGWEEEYLEEF 165 (351)
T ss_dssp HHHHHHHHHHHTT--EEEEE--SS-S---SEEEEE-TTS-EEEEEECCCCCTS-HHHHHHT------------CCCHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeeeeeeeeeccccccCCCCcEEEEEcHHHHhccCHHhhhccccccCCCCCCCChHHHHHH
Confidence 99999999999998844 33 3 223332110
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCC-----ccccHHHHHHHHHHhCCCCCcee
Q 037393 265 -------LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQ-----YDWDAATAANFLRKYGLINDFKL 332 (503)
Q Consensus 265 -------~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~-----y~~dvgt~l~fl~~~gl~~~~gV 332 (503)
-..+-.+.|++|.-||+.|+--|.+.|. +++|-|. +|--.. .+.+...---+++.+..| .-|+
T Consensus 166 ~~~l~~y~~i~~e~lw~nl~yFL~~v~PvAEe~gV--~laiHPD--DPP~~~~GlpRi~~~~e~~~~~~~~~~Sp-~nGl 240 (351)
T PF03786_consen 166 RELLAAYGGIDEEQLWENLKYFLEAVIPVAEEAGV--KLAIHPD--DPPWPLFGLPRIVSTAEDLKRILDLVDSP-ANGL 240 (351)
T ss_dssp HHHHHHCCT--HHHHHHHHHHHHHHHHHHHHHCT---EEEEE----SSSS-BTTB---TTSHHHHHHHHHCT-ST-TEEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHhCC--EEEeCCC--CCCCccCCCCcccCCHHHHHHHHHhCCCc-cccE
Confidence 0223578899999999999999999987 9999764 443322 233333333444445554 4899
Q ss_pred eccccccc-ccCCCHHHHHHHHHHcCCeeEEecCC
Q 037393 333 NIECNHAT-LSGHSCHHDIETARLNGLLGNIDANT 366 (503)
Q Consensus 333 niD~gHa~-lAG~n~ah~va~A~~~gkLg~ihlNd 366 (503)
|+=+|=.- +++.+....+...... ++.-||+-+
T Consensus 241 tfC~Gs~g~~~~ndl~~~ir~f~~~-rI~fvH~Rn 274 (351)
T PF03786_consen 241 TFCTGSLGAMPDNDLPEMIREFGER-RIHFVHFRN 274 (351)
T ss_dssp EEECCHHHCSTTS-HHHHHHHCHHT-GEEEEEE-E
T ss_pred EeecCccccCCCCCHHHHHHHHhcc-CcceEEecc
Confidence 99887543 3446777777777777 999999966
No 53
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=80.57 E-value=15 Score=35.65 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=77.0
Q ss_pred HHHHHHHHHhCCceecc--cCCCCCCCCCC---HHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCC
Q 037393 152 RANFEFIDKLGVDFWCF--HDRDIAPDGET---LKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSE 226 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~f--HD~Dl~P~g~t---~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD 226 (503)
++.|+.++.+|+..|=+ +...+.+..++ ....-+.+++ .++...+.||+|. .+++..|.+..+.-..+.
T Consensus 24 ~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~---~v~~a~~~gi~vi---ld~h~~~~w~~~~~~~~~ 97 (281)
T PF00150_consen 24 EADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDR---IVDAAQAYGIYVI---LDLHNAPGWANGGDGYGN 97 (281)
T ss_dssp HHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHH---HHHHHHHTT-EEE---EEEEESTTCSSSTSTTTT
T ss_pred HHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHH---HHHHHHhCCCeEE---EEeccCcccccccccccc
Confidence 45678999999988776 44444422222 2455566666 4455568899874 466777776444333333
Q ss_pred HHHHHHHHHHHHH-HHHHHHHh-CCCeEEEccCCcCcCCCCCC--C---HHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 227 VAVYAYAAAQVKK-AMEVTHYL-GGENYVFWGGREGYQSLLNT--D---MGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 227 ~~VRa~Ai~~vkr-aiDia~eL-Ga~~~v~WgGrEGydy~~qt--D---~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
... ..+..++ .-.+++.+ +-..++.|-= .+-|-.. + -....+.+.+.++.+++..++.+++..|.++
T Consensus 98 ~~~---~~~~~~~~~~~la~~y~~~~~v~~~el---~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 98 NDT---AQAWFKSFWRALAKRYKDNPPVVGWEL---WNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHH---HHHHHHHHHHHHHHHHTTTTTTEEEES---SSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred chh---hHHHHHhhhhhhccccCCCCcEEEEEe---cCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 222 2222333 45566777 4445555531 1112221 1 1222366778888888888888887677776
Q ss_pred c
Q 037393 300 P 300 (503)
Q Consensus 300 P 300 (503)
.
T Consensus 172 ~ 172 (281)
T PF00150_consen 172 G 172 (281)
T ss_dssp E
T ss_pred C
Confidence 5
No 54
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.49 E-value=27 Score=32.01 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCC--CCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCC
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDR--DIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHG 220 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~--Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~G 220 (503)
-+.+.+.+..+++..++||++++.+|-. . .+...+.++..+++.+..+.+.+.. +.|+++..-|..-... .
T Consensus 66 r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~-----~ 139 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRLGAKYIVVHSGRYP-SGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS-----E 139 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTBSEEEEECTTES-SSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS-----S
T ss_pred hHHHHHHHHHHHHHHHHhCCCceeecCcccc-cccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc-----c
Confidence 4556668888999999999999999966 3 2344555555556555555555555 8898887774332221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEcc
Q 037393 221 AATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWG 256 (503)
Q Consensus 221 A~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~Wg 256 (503)
...+ +.+..++.++++.+++-+..
T Consensus 140 ~~~~------------~~~~~~~l~~~~~~~~~i~~ 163 (213)
T PF01261_consen 140 TPFS------------VEEIYRLLEEVDSPNVGICF 163 (213)
T ss_dssp EESS------------HHHHHHHHHHHTTTTEEEEE
T ss_pred chhh------------HHHHHHHHhhcCCCcceEEE
Confidence 1111 67778888999988776654
No 55
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.30 E-value=63 Score=31.83 Aligned_cols=64 Identities=19% Similarity=0.119 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeec
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGT 208 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~t 208 (503)
-+.+.+.+..+++..++||++++.++..+.. .....++..+++.+..+.+.++. +.||++..-+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYDVY-YEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcccc-cccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 3455667888999999999999998644321 11111222222222111223334 8899988764
No 56
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=80.00 E-value=24 Score=38.98 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCCCCH
Q 037393 153 ANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATSSEV 227 (503)
Q Consensus 153 ~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~TnPD~ 227 (503)
+=+++|++||++.+=| --.-|.|.|..-.-+++-++-.-+++.+|.+.||+. ++|-.-|..|..- .|+++|+
T Consensus 73 EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P-~vTL~H~dlP~~L~~~yGGW~n~-- 149 (477)
T PRK15014 73 EDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEP-VITLSHFEMPLHLVQQYGSWTNR-- 149 (477)
T ss_pred HHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEE-EEEeeCCCCCHHHHHhcCCCCCh--
Confidence 3446999999998887 778889987532224555666666788888999985 6788889999864 4999996
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEccC-------------CcCcC-----CCCCCC----HHHHHHHHHHHHHHHHH
Q 037393 228 AVYAYAAAQVKKAMEVTHYLGGENYVFWGG-------------REGYQ-----SLLNTD----MGREIDHMANFFESAAA 285 (503)
Q Consensus 228 ~VRa~Ai~~vkraiDia~eLGa~~~v~WgG-------------rEGyd-----y~~qtD----~~~~~d~l~e~l~~v~d 285 (503)
++-..=++.++.|+ +++|- .|..|.- ..||. .+...+ .-+...++.-+=..+++
T Consensus 150 ~~~~~F~~Ya~~~f---~~fgd-rVk~WiT~NEp~~~~~~~~~~~gy~~~g~~~~~~~~~~~~~~~~~h~~llAHa~A~~ 225 (477)
T PRK15014 150 KVVDFFVRFAEVVF---ERYKH-KVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFVASALAVK 225 (477)
T ss_pred HHHHHHHHHHHHHH---HHhcC-cCCEEEEecCcccccccccccccccccccccCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 45555566666554 45663 2333321 11332 122122 33667777777777788
Q ss_pred HHHhcCCCceEEecc--CCCCCC
Q 037393 286 YKKKIGFKGNLLIEP--KPQEPT 306 (503)
Q Consensus 286 ya~~iG~~~~~~IEP--KP~EP~ 306 (503)
..++++.+++|.|=. -|.+|.
T Consensus 226 ~~~~~~~~~~IGi~~~~~~~~P~ 248 (477)
T PRK15014 226 AARRINPEMKVGCMLAMVPLYPY 248 (477)
T ss_pred HHHHhCCCCeEEEEEeCceeccC
Confidence 777776666665433 355554
No 57
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=79.92 E-value=65 Score=31.73 Aligned_cols=63 Identities=5% Similarity=-0.020 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeec
Q 037393 145 AMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGT 208 (503)
Q Consensus 145 e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~t 208 (503)
+.+.+.++.++++.+.||++.+.+|-.+. ....+.++..+++-+..+.+.+++ +.||++.--+
T Consensus 86 ~~~~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 86 RESLDMIKLAMDMAKEMNAGYTLISAAHA-GYLTPPNVIWGRLAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 34556788899999999999998864321 122344444444444333444445 8899887663
No 58
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=78.94 E-value=21 Score=39.22 Aligned_cols=138 Identities=16% Similarity=0.161 Sum_probs=88.8
Q ss_pred HHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc--CCCCCCCCH
Q 037393 152 RANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM--HGAATSSEV 227 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk--~GA~TnPD~ 227 (503)
++=+++|++||++.+=| -=.-|.|.|.. .-+++-++-.-+++.+|.+.||+ .++|-.-|..|..- .|+++|++
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g-~vN~~gl~~Y~~lid~l~~~GI~-P~VTL~H~dlP~~L~~~GGW~n~~- 133 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSRIFPDGYG-EVNPKGVEYYHRLFAECHKRHVE-PFVTLHHFDTPEALHSNGDWLNRE- 133 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCE-EEEEecCCCCcHHHHHcCCCCCHH-
Confidence 34446999999998888 67778888753 22445566555677788899998 47889999999854 59999986
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEccC--------CcCc----CCCC-CC---CHHHHHHHHHHHHHHHHHHHHhcC
Q 037393 228 AVYAYAAAQVKKAMEVTHYLGGENYVFWGG--------REGY----QSLL-NT---DMGREIDHMANFFESAAAYKKKIG 291 (503)
Q Consensus 228 ~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--------rEGy----dy~~-qt---D~~~~~d~l~e~l~~v~dya~~iG 291 (503)
+-..=++.++.| .+++|- |..|.- ..|| --|. +. ..-+...++.-+=..+++..++++
T Consensus 134 -~v~~F~~YA~~~---~~~fgd--Vk~W~T~NEP~~~~~~gy~~G~~~Pg~~~~~~~~~~~~hn~llAHa~A~~~~~~~~ 207 (469)
T PRK13511 134 -NIDHFVRYAEFC---FEEFPE--VKYWTTFNEIGPIGDGQYLVGKFPPGIKYDLAKVFQSHHNMMVAHARAVKLFKDKG 207 (469)
T ss_pred -HHHHHHHHHHHH---HHHhCC--CCEEEEccchhhhhhcchhhcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 323333344433 567774 777743 2233 2232 11 233566677777677777666766
Q ss_pred CCceEEe
Q 037393 292 FKGNLLI 298 (503)
Q Consensus 292 ~~~~~~I 298 (503)
.+++|.|
T Consensus 208 ~~g~IGi 214 (469)
T PRK13511 208 YKGEIGV 214 (469)
T ss_pred CCCeEEE
Confidence 6666543
No 59
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=78.66 E-value=3 Score=42.95 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEccCCcCcCC---CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCc
Q 037393 234 AAQVKKAMEVTHYLGGENYVFWGGREGYQS---LLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQY 310 (503)
Q Consensus 234 i~~vkraiDia~eLGa~~~v~WgGrEGydy---~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y 310 (503)
.+..|+-||.|+++|-+.+.+ -+|++. ..+.|.-+.... .-|.++++|++++|+++-+-.--+..--... +
T Consensus 31 t~~~k~yIDfAa~~G~eYvlv---D~GW~~~~~~~~~d~~~~~~~--~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~-~ 104 (273)
T PF10566_consen 31 TETQKRYIDFAAEMGIEYVLV---DAGWYGWEKDDDFDFTKPIPD--FDLPELVDYAKEKGVGIWLWYHSETGGNVAN-L 104 (273)
T ss_dssp HHHHHHHHHHHHHTT-SEEEE---BTTCCGS--TTT--TT-B-TT----HHHHHHHHHHTT-EEEEEEECCHTTBHHH-H
T ss_pred HHHHHHHHHHHHHcCCCEEEe---ccccccccccccccccccCCc--cCHHHHHHHHHHcCCCEEEEEeCCcchhhHh-H
Confidence 457899999999999999999 455542 222222222222 5688999999999987777666555110000 2
Q ss_pred cccHHHHHHHHHHhCCCCCceeeccc--ccccccCCCHHHHHHHHHHcCCeeEEecC
Q 037393 311 DWDAATAANFLRKYGLINDFKLNIEC--NHATLSGHSCHHDIETARLNGLLGNIDAN 365 (503)
Q Consensus 311 ~~dvgt~l~fl~~~gl~~~~gVniD~--gHa~lAG~n~ah~va~A~~~gkLg~ihlN 365 (503)
.......+..+++.|. .||-+|+ +|.+-.=.-....+..|+++..|..+|=-
T Consensus 105 ~~~~~~~f~~~~~~Gv---~GvKidF~~~d~Q~~v~~y~~i~~~AA~~~LmvnfHg~ 158 (273)
T PF10566_consen 105 EKQLDEAFKLYAKWGV---KGVKIDFMDRDDQEMVNWYEDILEDAAEYKLMVNFHGA 158 (273)
T ss_dssp HCCHHHHHHHHHHCTE---EEEEEE--SSTSHHHHHHHHHHHHHHHHTT-EEEETTS
T ss_pred HHHHHHHHHHHHHcCC---CEEeeCcCCCCCHHHHHHHHHHHHHHHHcCcEEEecCC
Confidence 2235788888999996 5888886 22222222245667788888999999853
No 60
>PRK12677 xylose isomerase; Provisional
Probab=78.09 E-value=1e+02 Score=33.10 Aligned_cols=64 Identities=14% Similarity=0.177 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhCCceecccCC---CCCCCCCCHHHHHHhHHHHHHHHHHHh-c--CCceeeeec
Q 037393 145 AMAKRRMRANFEFIDKLGVDFWCFHDR---DIAPDGETLKEANANLDEVVALAKELQ-G--TKVRPLWGT 208 (503)
Q Consensus 145 e~a~~r~~~afe~l~kLG~~~~~fHD~---Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~--tGvkl~~~t 208 (503)
+.|.+.+..+++.-++||++.+.+|-- .-.|...+..+..+++.+-++.+.+.. + .||++.--+
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 445667889999999999999988633 223445566655555544333343443 4 558766653
No 61
>PLN02998 beta-glucosidase
Probab=77.83 E-value=30 Score=38.45 Aligned_cols=98 Identities=18% Similarity=0.317 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATS 224 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~Tn 224 (503)
|.++=+++|++||++.+-| -=.-|.|.|.. .-+++-++-.-+++.+|.+.||+. ++|-.-|..|... .|+++|
T Consensus 83 ry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g-~vN~~gl~~Y~~lid~L~~~GIeP-~VTL~H~dlP~~L~~~yGGW~n 160 (497)
T PLN02998 83 KYKEDVKLMADMGLEAYRFSISWSRLLPSGRG-PINPKGLQYYNNLIDELITHGIQP-HVTLHHFDLPQALEDEYGGWLS 160 (497)
T ss_pred hhHHHHHHHHHcCCCeEEeeccHHhcCcCCCC-CcCHHHHHHHHHHHHHHHHcCCce-EEEecCCCCCHHHHHhhCCcCC
Confidence 3344456999999998888 77778898754 234555666666788888999984 7889999999864 499999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFW 255 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~W 255 (503)
++ +...=++.++.| .+++| +.|..|
T Consensus 161 ~~--~v~~F~~YA~~~---~~~fg-drVk~W 185 (497)
T PLN02998 161 QE--IVRDFTAYADTC---FKEFG-DRVSHW 185 (497)
T ss_pred ch--HHHHHHHHHHHH---HHHhc-CcCCEE
Confidence 86 433334444444 44566 445555
No 62
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=77.83 E-value=63 Score=32.10 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeec
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGT 208 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~t 208 (503)
.-+.+..++..++++.++||++++.+|-... + +.+.++..+.+-+....+.++. ..||++.--|
T Consensus 79 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~-~-~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 79 KREKSIERLKDEIERCEELGIRLLVFHPGSY-L-GQSKEEGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-C-CCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 4555666788899999999999999876532 2 2344444433333333333444 7899887764
No 63
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=77.65 E-value=10 Score=41.12 Aligned_cols=151 Identities=21% Similarity=0.225 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccC--CCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMH--GAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~--GA~TnP 225 (503)
|.++=+++|++||+..+-| -=.-|.|.|..-.-+.+-++-..+++++|.+.||+. ++|-.-|..|.+.. |++.|+
T Consensus 59 ~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P-~vtL~H~~~P~~l~~~ggw~~~ 137 (455)
T PF00232_consen 59 RYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEP-IVTLYHFDLPLWLEDYGGWLNR 137 (455)
T ss_dssp HHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EE-EEEEESS--BHHHHHHTGGGST
T ss_pred hhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccce-eeeeeecccccceeecccccCH
Confidence 5556678999999999887 445566775222223444555555778888999995 67899999998764 999996
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC------------CcCcCCCCCCC---HHHHHHHHHHHHHHHHHHHHhc
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG------------REGYQSLLNTD---MGREIDHMANFFESAAAYKKKI 290 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG------------rEGydy~~qtD---~~~~~d~l~e~l~~v~dya~~i 290 (503)
+ +-..=++.++. +.+++| +.|.+|.- ..|.-.|...+ .-+...++..+=..+++..+++
T Consensus 138 ~--~~~~F~~Ya~~---~~~~~g-d~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~ 211 (455)
T PF00232_consen 138 E--TVDWFARYAEF---VFERFG-DRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEK 211 (455)
T ss_dssp H--HHHHHHHHHHH---HHHHHT-TTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHH---HHHHhC-CCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhc
Confidence 5 32333333333 445666 45666632 23333344333 3345667788888888888887
Q ss_pred CCCceEEe--ccCCCCCCC
Q 037393 291 GFKGNLLI--EPKPQEPTK 307 (503)
Q Consensus 291 G~~~~~~I--EPKP~EP~~ 307 (503)
..+++|.| -.-|.+|..
T Consensus 212 ~~~~~IGi~~~~~~~~P~~ 230 (455)
T PF00232_consen 212 YPDGKIGIALNFSPFYPLS 230 (455)
T ss_dssp TCTSEEEEEEEEEEEEESS
T ss_pred ccceEEeccccccccCCCC
Confidence 77777744 444555544
No 64
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=77.59 E-value=79 Score=31.45 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeec
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGT 208 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~t 208 (503)
.+.+.+.+..+++..++||++.+.++-.+..+...+ ++..+++.+....+.+++ ++||++..-+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHD-EETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCC-HHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 444556788999999999999999987654332222 333333333222333444 8899888874
No 65
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=75.79 E-value=43 Score=35.47 Aligned_cols=110 Identities=15% Similarity=0.302 Sum_probs=66.2
Q ss_pred HHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCcee-eeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 158 IDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRP-LWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 158 l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl-~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
-.++|+++++++...-.|.+.+-+ .+.+.+ .++..+ .+++-| ..++.| -++||+|-+.|++
T Consensus 85 ~~~~GAd~Idl~~~s~dp~~~d~~--~~e~~~---~Vk~V~eavd~PL~Id~s~n------------~~kD~evleaale 147 (319)
T PRK04452 85 VEEYGADMITLHLISTDPNGKDKS--PEEAAK---TVEEVLQAVDVPLIIGGSGN------------PEKDAEVLEKVAE 147 (319)
T ss_pred HHHhCCCEEEEECCCCCcccccch--HHHHHH---HHHHHHHhCCCCEEEecCCC------------CCCCHHHHHHHHH
Confidence 458999999998766566543322 112233 344454 667776 554333 2678888888887
Q ss_pred HHH---------------HHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCc-eEEec
Q 037393 236 QVK---------------KAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKG-NLLIE 299 (503)
Q Consensus 236 ~vk---------------raiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~-~~~IE 299 (503)
.++ +-+.+|++-|+ .++.|.-.| .+.++.+.....+.|+.. +|.|-
T Consensus 148 ~~~g~~pLInSat~en~~~i~~lA~~y~~-~Vva~s~~D-----------------ln~ak~L~~~l~~~Gi~~edIviD 209 (319)
T PRK04452 148 AAEGERCLLGSAEEDNYKKIAAAAMAYGH-AVIAWSPLD-----------------INLAKQLNILLTELGVPRERIVMD 209 (319)
T ss_pred HhCCCCCEEEECCHHHHHHHHHHHHHhCC-eEEEEcHHH-----------------HHHHHHHHHHHHHcCCCHHHEEEe
Confidence 766 56778888887 566666433 234444444445566621 56665
Q ss_pred cCC
Q 037393 300 PKP 302 (503)
Q Consensus 300 PKP 302 (503)
|=.
T Consensus 210 P~~ 212 (319)
T PRK04452 210 PTT 212 (319)
T ss_pred CCc
Confidence 544
No 66
>PRK05409 hypothetical protein; Provisional
Probab=75.07 E-value=1.1e+02 Score=31.85 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=98.8
Q ss_pred CceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh--cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHH
Q 037393 163 VDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ--GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKA 240 (503)
Q Consensus 163 ~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~--~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkra 240 (503)
+++++.|-......|-...+.-+.+.+ ..- -+|+.+ .-|+..-+|++- +++-
T Consensus 28 vdf~Ev~~EN~~~~gg~~~~~L~~i~e------~~Pv~~HGv~L-------------slGs~~~ld~~~-------L~~l 81 (281)
T PRK05409 28 VDFFEVHPENYMGAGGPPLAQLDAIRE------RYPLSLHGVSL-------------SLGGAAPLDKDH-------LKRL 81 (281)
T ss_pred CCEEEECcccccCcCCchHHHHHHHHh------cCCEEEccccc-------------ccCCCCCCCHHH-------HHHH
Confidence 789999888777555444433222221 111 233332 235666677663 2333
Q ss_pred HHHHHHhCCCeEEE---ccCCcCcCC--CCCCCHHH-HHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC-CCCcccc
Q 037393 241 MEVTHYLGGENYVF---WGGREGYQS--LLNTDMGR-EIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT-KHQYDWD 313 (503)
Q Consensus 241 iDia~eLGa~~~v~---WgGrEGydy--~~qtD~~~-~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~-~h~y~~d 313 (503)
-.++.+++..-|+= |..- |... ++-..+-+ .++++++-++.+-+. +|- +|+||==+.=.+ .+..++-
T Consensus 82 ~~l~~~~~~~~vSeHL~~~~~-g~~~~dLlPlP~T~e~l~~v~~ri~~vQd~---lgr--plllEN~s~yl~~~~~~m~E 155 (281)
T PRK05409 82 KALADRYQPPLVSEHLAWSSD-GGHLYDLLPLPYTEEALDHVAERIRQVQDI---LGR--PLLLENPSSYLAFPDSEMSE 155 (281)
T ss_pred HHHHHHHCCCEEEeeeeeecC-CCccCccCCCCCCHHHHHHHHHHHHHHHHH---hCC--CeEEeccccccCCCCCCCCH
Confidence 34555666655542 4332 4433 44445544 489999988888887 443 999996554333 2333443
Q ss_pred HHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHH---HHHcCCeeEEecCCC
Q 037393 314 AATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIET---ARLNGLLGNIDANTG 367 (503)
Q Consensus 314 vgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~---A~~~gkLg~ihlNdg 367 (503)
+ .|++++=.....|+.+|+||......|.-..... +.-..+..-||+..+
T Consensus 156 ~----eFl~el~~rtgc~lLLDvnNvyvna~N~g~dp~~~L~~lP~~rV~eiHlAG~ 208 (281)
T PRK05409 156 W----EFLNELAERTGCGLLLDVNNVYVNAVNHGFDPLAYLDALPLERVAYIHLAGH 208 (281)
T ss_pred H----HHHHHHHHhcCCCEEEEecceeeehhcCCCCHHHHHHhCCHHHeEEEEccCC
Confidence 4 3555544444499999999999888776433322 333468999999987
No 67
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=74.47 E-value=15 Score=37.86 Aligned_cols=61 Identities=8% Similarity=0.016 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 237 VKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 237 vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
.++.+|.+.+.|.+.+.+...- .+.-.+.++++-.++..+-+..+++|+++.|...++.+|
T Consensus 76 ~~~die~A~~~g~~~v~i~~s~--S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e 136 (279)
T cd07947 76 NKEDLKLVKEMGLKETGILMSV--SDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE 136 (279)
T ss_pred CHHHHHHHHHcCcCEEEEEEcC--CHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4577888888899988887542 122334555566677777788888899989988899997
No 68
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=72.60 E-value=94 Score=32.12 Aligned_cols=155 Identities=12% Similarity=0.049 Sum_probs=84.1
Q ss_pred HHHHHhcCCceeeeeccCCCCCccccCCCCCCCC---HHHHHHHHHHHHHHHHHHHHhCCCeEEEccC--C------cCc
Q 037393 193 LAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSE---VAVYAYAAAQVKKAMEVTHYLGGENYVFWGG--R------EGY 261 (503)
Q Consensus 193 ~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD---~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--r------EGy 261 (503)
..++..+.|..+ +++|.|+-.+.+.....-+. .++-+.|++.++++.+-. |.....+.+- - +|-
T Consensus 51 vH~~yl~AGadi--I~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~---~~~~~~VaGsiGP~g~~l~~~~ 125 (304)
T PRK09485 51 VHLDYFRAGADC--AITASYQATFQGFAARGLSEAEAEELIRRSVELAKEARDEF---WAEKPLVAGSVGPYGAYLADGS 125 (304)
T ss_pred HHHHHHHhCCCE--EEeeccccCHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhh---ccCCceEEEecCCcccccCCCC
Confidence 445555667776 66788875554443333221 233344444444443321 1111222221 1 222
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccC--CCCCCCCCccccHHHHHHHHHHh--CCCCCceeecc
Q 037393 262 QSLL--NTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPK--PQEPTKHQYDWDAATAANFLRKY--GLINDFKLNIE 335 (503)
Q Consensus 262 dy~~--qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPK--P~EP~~h~y~~dvgt~l~fl~~~--gl~~~~gVniD 335 (503)
+|.. ..+.. .+.+.+++-++.-.+-|+| -|++|-= ..| +-.++..+++. ++|=-+.++++
T Consensus 126 ~y~g~~~~~~~----~~~~~~~~q~~~l~~~gvD-~i~~ET~~~~~E---------~~~~~~~~~~~~~~~pv~is~~~~ 191 (304)
T PRK09485 126 EYRGDYGLSEE----ELQDFHRPRIEALAEAGAD-LLACETIPNLDE---------AEALVELLKEEFPGVPAWLSFTLR 191 (304)
T ss_pred CCCCCCCCCHH----HHHHHHHHHHHHHhhCCCC-EEEEeccCCHHH---------HHHHHHHHHHhcCCCcEEEEEEeC
Confidence 2221 23344 4444444444444445665 6777743 334 44555556655 78867777887
Q ss_pred cccccccCCCHHHHHHHHHHcCCeeEEecCC
Q 037393 336 CNHATLSGHSCHHDIETARLNGLLGNIDANT 366 (503)
Q Consensus 336 ~gHa~lAG~n~ah~va~A~~~gkLg~ihlNd 366 (503)
-+..+.-|++++..+..+...+....|=+|=
T Consensus 192 ~~g~l~~G~~~~~~~~~l~~~~~~~~iGiNC 222 (304)
T PRK09485 192 DGTHISDGTPLAEAAALLAASPQVVAVGVNC 222 (304)
T ss_pred CCCcCCCCCCHHHHHHHHhcCCCceEEEecC
Confidence 6656899999999888887656677788887
No 69
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=72.12 E-value=16 Score=34.71 Aligned_cols=135 Identities=17% Similarity=0.185 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCceecc-----cCCCCCCCCCCHHHH-HHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCF-----HDRDIAPDGETLKEA-NANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAA 222 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~f-----HD~Dl~P~g~t~~e~-~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~ 222 (503)
.+.+.-|+.|+++|++.+=+ ++....|..-..... ....+-+...|.+-++.|++|..+ |-.+|+|=. .
T Consensus 20 ~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~G---l~~~~~~w~-~- 94 (166)
T PF14488_consen 20 AQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVG---LYFDPDYWD-Q- 94 (166)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEe---CCCCchhhh-c-
Confidence 36777889999999988844 554444432200000 011111222444444999999988 344666666 3
Q ss_pred CCCCHHHHHHHHHHHH-HHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 223 TSSEVAVYAYAAAQVK-KAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 223 TnPD~~VRa~Ai~~vk-raiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
++++. .+...+ -+-|+.+.-|... ...|+--|...+... .+..+.++.+..+.+.+-.+..++|=|
T Consensus 95 ~~~~~-----~~~~~~~v~~el~~~yg~h~-----sf~GWYip~E~~~~~--~~~~~~~~~l~~~lk~~s~~~Pv~ISp 161 (166)
T PF14488_consen 95 GDLDW-----EAERNKQVADELWQRYGHHP-----SFYGWYIPYEIDDYN--WNAPERFALLGKYLKQISPGKPVMISP 161 (166)
T ss_pred cCHHH-----HHHHHHHHHHHHHHHHcCCC-----CCceEEEecccCCcc--cchHHHHHHHHHHHHHhCCCCCeEEec
Confidence 55555 112222 2223333334321 334443333222221 233677777777777765555666644
No 70
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=71.42 E-value=16 Score=37.56 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=65.1
Q ss_pred HHHHHhCCceecc---cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHH
Q 037393 156 EFIDKLGVDFWCF---HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAY 232 (503)
Q Consensus 156 e~l~kLG~~~~~f---HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~ 232 (503)
+.|.++|++.++. .++..+|.-.+..|. +.. +.. ..++++.+..+
T Consensus 33 ~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~---~~~----l~~--~~~~~~~~l~~----------------------- 80 (287)
T PRK05692 33 DRLSAAGLSYIEVASFVSPKWVPQMADAAEV---MAG----IQR--RPGVTYAALTP----------------------- 80 (287)
T ss_pred HHHHHcCCCEEEeCCCcCcccccccccHHHH---HHh----hhc--cCCCeEEEEec-----------------------
Confidence 5799999999875 688888875544322 222 111 22344433211
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 233 AAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 233 Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
..+.+|.|.+.|.+.+.+...-- +...+.++++-+++..+-+..+++++++.|......|.+
T Consensus 81 ----~~~~ie~A~~~g~~~v~i~~~~s--~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~ 142 (287)
T PRK05692 81 ----NLKGLEAALAAGADEVAVFASAS--EAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSC 142 (287)
T ss_pred ----CHHHHHHHHHcCCCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEE
Confidence 14455777788999888875421 111223444445566667778888888899877777776
No 71
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=69.94 E-value=25 Score=35.78 Aligned_cols=96 Identities=16% Similarity=0.261 Sum_probs=60.8
Q ss_pred cCCCCCCCCCCHHHH------HHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHH
Q 037393 169 HDRDIAPDGETLKEA------NANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAME 242 (503)
Q Consensus 169 HD~Dl~P~g~t~~e~------~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiD 242 (503)
|+..|+|+...--.+ ....+.+.+.+++++.-|++| .||.| ||+ +.|+
T Consensus 86 ~~vtLVPe~r~evTTegGlD~~~~~~~l~~~v~~L~~~GirV-----SLFiD----------~d~-----------~qi~ 139 (243)
T COG0854 86 HQVTLVPEKREEVTTEGGLDVAGQLDKLRDAVRRLKNAGIRV-----SLFID----------PDP-----------EQIE 139 (243)
T ss_pred CeEEeCCCchhhcccccchhhhhhhhhHHHHHHHHHhCCCeE-----EEEeC----------CCH-----------HHHH
Confidence 455567765432111 122344455667777888885 34554 565 4689
Q ss_pred HHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 037393 243 VTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGF 292 (503)
Q Consensus 243 ia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~ 292 (503)
.+++.|++.+-+-.|+=+ ...+..-....+...+-|+..++++.+.|.
T Consensus 140 aa~~~gA~~IELhTG~Ya--~~~~~~~~~~~~~el~rl~~~a~~A~~lGL 187 (243)
T COG0854 140 AAAEVGAPRIELHTGPYA--DAHDAAEQARADAELERLAKAAKLAAELGL 187 (243)
T ss_pred HHHHhCCCEEEEeccccc--ccCChHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999999999999643 222222444555566677788888888765
No 72
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=68.69 E-value=14 Score=37.42 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=55.4
Q ss_pred CHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCc---cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q 037393 179 TLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHP---RYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFW 255 (503)
Q Consensus 179 t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~p---rfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~W 255 (503)
-+.|..+|++.||..+|.+. --.++.-+||-..... ++.-+..+..-...-+-.....+.|+.+|.++|-..+.+|
T Consensus 94 Pl~Ey~dNlr~iv~~lks~~-~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la~e~~l~~vdlw 172 (245)
T KOG3035|consen 94 PLEEYKDNLRKIVSHLKSLS-PETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLAQEIGLYVVDLW 172 (245)
T ss_pred CHHHHHHHHHHHHHHhhccC-CcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHHHHhCCeeeeHH
Confidence 46999999999999998885 3355566666655443 2222222222111223355667889999999999999999
Q ss_pred cC-CcCcC
Q 037393 256 GG-REGYQ 262 (503)
Q Consensus 256 gG-rEGyd 262 (503)
.- ++++|
T Consensus 173 s~~Q~~~d 180 (245)
T KOG3035|consen 173 SKMQESDD 180 (245)
T ss_pred hhhhhccc
Confidence 87 55544
No 73
>PF02784 Orn_Arg_deC_N: Pyridoxal-dependent decarboxylase, pyridoxal binding domain; InterPro: IPR022644 These enzymes are collectively known as group IV decarboxylases []. Pyridoxal-dependent decarboxylases acting on ornithine, lysine, arginine and related substrates can be classified into two different families on the basis of sequence similarities [, ]. Members of this family while most probably evolutionary related, do not share extensive regions of sequence similarities. The proteins contain a conserved lysine residue which is known, in mouse ODC [], to be the site of attachment of the pyridoxal-phosphate group. The proteins also contain a stretch of three consecutive glycine residues and has been proposed to be part of a substrate- binding region [].; GO: 0003824 catalytic activity; PDB: 2OO0_A 2ON3_A 1D7K_B 3VAB_A 2J66_A 3C5Q_A 2QGH_A 1TWI_B 1TUF_A 3N2O_A ....
Probab=67.32 E-value=72 Score=31.39 Aligned_cols=107 Identities=17% Similarity=0.091 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHH-HhCCC---
Q 037393 175 PDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTH-YLGGE--- 250 (503)
Q Consensus 175 P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~-eLGa~--- 250 (503)
.+|-++++ . +.+ .++.+...++.+...- |--|+ -..+++.+..+++++.+.++-.. ++|-+
T Consensus 134 kFGi~~~~-~--~~~---~l~~~~~~~l~l~GlH--------~H~gS-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~ 198 (251)
T PF02784_consen 134 KFGIDIEE-E--AEE---ALERAKELGLRLVGLH--------FHVGS-QILDAEAFRQAIERLLDLAEELKEELGFEDLE 198 (251)
T ss_dssp SSSBEGGG-H--HHH---HHHHHHHTTEEEEEEE--------E-HCS-SBSSCHHHHHHHHHHHHHHHHHHHHTTTTT-S
T ss_pred cCCcChHH-H--HHH---HHHhhccceEEEEEee--------eeecc-CCcchHHHHHHHHHHHHHHhhhcccccccccc
Confidence 47777776 1 333 3333446667777761 22244 22467788888998888777766 88844
Q ss_pred eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 251 NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 251 ~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
.+.+=|| -|..|....|+....+.+.+.++..... ...+.++.+||
T Consensus 199 ~idiGGG-~~~~y~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~l~~Ep 244 (251)
T PF02784_consen 199 FIDIGGG-FGVPYDDEYDLEEYAEVIREALKEYFEE---GLPGPKLIIEP 244 (251)
T ss_dssp EEEEESS-B-SSSSSSSCHHHHHHHHHHHHHHHHCH---TCTTSEEEEEE
T ss_pred EEEeeCC-CCCCCcccccchhHHHHHHHHHHHHHhc---cCCCCEEEEee
Confidence 6666555 7777776788887777777776666654 34456999998
No 74
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=65.23 E-value=65 Score=29.65 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=50.7
Q ss_pred HHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHH
Q 037393 157 FIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQ 236 (503)
Q Consensus 157 ~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~ 236 (503)
-++..|+..|.-=-.+-.+-. . ...++|.. +.++.+...|+++.-+ |+.+.. -++.-..-++.....
T Consensus 12 ~l~~aGy~~VgrYl~~~~~~~--~-~~~k~Lt~--~e~~~i~~~Gl~i~pI----yq~~~~----~~~~~~~~~~~G~~d 78 (136)
T PF08924_consen 12 ALKAAGYRAVGRYLSGSRGGC--A-MRQKNLTA--GEVQDIRAAGLRIFPI----YQGGGR----ETSDFTYGYAQGVAD 78 (136)
T ss_dssp HHHHT---SEEEESS-BTTTB--------B--H--HHHHHHHHTT-EEEEE----E------------S-B--HHHHHHH
T ss_pred HHHHCCCCEEEEEcCCCCCCc--c-cccCCCCH--HHHHHHHHCCCEEEEE----Eecccc----cccccccHHHHHHHH
Confidence 577889988855323322211 1 34445543 2345555889998876 333211 222222345678889
Q ss_pred HHHHHHHHHHhCCCe-EEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 037393 237 VKKAMEVTHYLGGEN-YVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGF 292 (503)
Q Consensus 237 vkraiDia~eLGa~~-~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~ 292 (503)
.++|+..+++||... -+++..-| || +-..+.....-.+-+++..++ ...||
T Consensus 79 A~~A~~~A~~lG~p~gt~IYfavD-~d-~~~~~~~~~i~~Y~~g~~~~l---~~~gY 130 (136)
T PF08924_consen 79 ARDAVAAARALGFPAGTPIYFAVD-YD-ATDAECDSAILPYFRGWNSAL---GASGY 130 (136)
T ss_dssp HHHHHHHHHHTT--SS-EEEEE---TS--B-HH-------HHHHHHHHH---GGGT-
T ss_pred HHHHHHHHHHcCCCCCCEEEEEee-cC-CCchhhhhHHHHHHHHHHHHH---hhCCC
Confidence 999999999999986 99999988 55 333333333333444444444 33554
No 75
>PLN02814 beta-glucosidase
Probab=64.98 E-value=75 Score=35.51 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhCCceecc--cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCCC
Q 037393 151 MRANFEFIDKLGVDFWCF--HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATSS 225 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~f--HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~TnP 225 (503)
.++=+++|++||++.+=| -=.-|.|.|.. +-+++-|+-.-+++.+|.+.||+. ++|-.-|..|... .|+++|+
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g-~~N~~Gl~fY~~lId~l~~~GI~P-~VTL~H~dlP~~L~~~yGGW~n~ 156 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRG-LINPKGLLFYKNLIKELRSHGIEP-HVTLYHYDLPQSLEDEYGGWINR 156 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCC-CCCHHHHHHHHHHHHHHHHcCCce-EEEecCCCCCHHHHHhcCCcCCh
Confidence 334446999999998888 77788888653 234555665566788888999994 7889999999763 4999998
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC--------CcCcC---CCCCC---------------CHHHHHHHHHHH
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG--------REGYQ---SLLNT---------------DMGREIDHMANF 279 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--------rEGyd---y~~qt---------------D~~~~~d~l~e~ 279 (503)
+ +-..=++.++.+ .+++|. .|..|.- ..||. .|... ..-+...++.-+
T Consensus 157 ~--~i~~F~~YA~~~---f~~fgd-rVk~WiT~NEP~~~~~~gy~~G~~pg~~~~~~~~~~~~~~~~~~~~~a~hn~llA 230 (504)
T PLN02814 157 K--IIEDFTAFADVC---FREFGE-DVKLWTTINEATIFAIGSYGQGIRYGHCSPNKFINCSTGNSCTETYIAGHNMLLA 230 (504)
T ss_pred h--HHHHHHHHHHHH---HHHhCC-cCCEEEeccccchhhhcccccCcCCCCCCcccccccccCcchHHHHHHHHHHHHH
Confidence 6 333333444443 455663 4444421 11221 12111 133556666666
Q ss_pred HHHHHHHHHhc---CCCceEEe--ccCCCCCC
Q 037393 280 FESAAAYKKKI---GFKGNLLI--EPKPQEPT 306 (503)
Q Consensus 280 l~~v~dya~~i---G~~~~~~I--EPKP~EP~ 306 (503)
=..+++..++. +.+++|.| -..|.+|.
T Consensus 231 Ha~Av~~~~~~~~~~~~g~IGi~~~~~~~~P~ 262 (504)
T PLN02814 231 HASASNLYKLKYKSKQRGSIGLSIFAFGLSPY 262 (504)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEEeCceeecC
Confidence 66666666653 44555543 34455554
No 76
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=64.20 E-value=52 Score=35.16 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=68.1
Q ss_pred HHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHH----------HHHHHHHHHHHHHHhCCCeEEEccCCcCc
Q 037393 192 ALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAY----------AAAQVKKAMEVTHYLGGENYVFWGGREGY 261 (503)
Q Consensus 192 ~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~----------Ai~~vkraiDia~eLGa~~~v~WgGrEGy 261 (503)
++++.|.+.||...-++ -|.+|.+. +...-+.++.+. ++...++.+|.+.+.|.+.+.+...- .
T Consensus 72 ~ia~~L~~~GV~~IEvG--s~vspk~v--Pqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~--S 145 (347)
T PLN02746 72 ELIQRLVSSGLPVVEAT--SFVSPKWV--PQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASA--S 145 (347)
T ss_pred HHHHHHHHcCCCEEEEC--CCcCcccc--cccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEec--C
Confidence 35566778899877763 22233221 111111222211 12226788899999999987777541 1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHH
Q 037393 262 QSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRK 323 (503)
Q Consensus 262 dy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~ 323 (503)
|.-.+.+.++-.+...+-+..+++|+++.|...+..|..--.-|-... .+....+.++++
T Consensus 146 d~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r--~~~~~l~~~~~~ 205 (347)
T PLN02746 146 ESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP--VPPSKVAYVAKE 205 (347)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC--CCHHHHHHHHHH
Confidence 223333444445566666777888888888877766766433332221 244445555443
No 77
>COG3220 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.87 E-value=87 Score=32.66 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=108.0
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 037393 217 YMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLL--NTDMGREIDHMANFFESAAAYKKKIGFKG 294 (503)
Q Consensus 217 fk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~--qtD~~~~~d~l~e~l~~v~dya~~iG~~~ 294 (503)
+..|+.+..|.+..++..+.++|+==. +=++.++ |..-+|.-|.+ -.=-+...+++++-++++-|- ++ .
T Consensus 64 lslgg~~~ld~~~l~~~k~li~r~~~~---~~SeHL~-~~~~~g~~yDLlPlP~teea~~~va~~I~~~Qd~---Le--r 134 (282)
T COG3220 64 LSLGGQAPLDLDLLRRIKALIKRYDPA---FFSEHLS-YCTDDGHLYDLLPLPFTEEAVDHVAARIREVQDV---LE--R 134 (282)
T ss_pred eccCCCCCCCHHHHHHHHHHHHHhCch---hhhhhee-eeccCCeeeccccCcccHHHHHHHHHHHHHHHHH---hc--C
Confidence 345899999999988877777765211 1123333 55557763322 222356678888888887765 43 3
Q ss_pred eEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHH---HHHHHHHHcCCeeEEecCCCCCCC
Q 037393 295 NLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCH---HDIETARLNGLLGNIDANTGDPQV 371 (503)
Q Consensus 295 ~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~a---h~va~A~~~gkLg~ihlNdg~~q~ 371 (503)
+++||--+.=+..+. ..-.=..|++++-.+..+|+.+|+||....+-|.- |+.=-+....+..-||++.-+++.
T Consensus 135 plllEN~s~Y~~~~~---~~m~E~~FL~al~~~~~CglLLDvNNiyVna~NHG~d~~~yL~~~p~~rV~eIHlAGh~~~~ 211 (282)
T COG3220 135 PLLLENPSYYLHSPC---SAMNEVEFLNALAREAGCGLLLDVNNIYVNAVNHGFDPEEYLAALPVERVGEIHLAGHDEEE 211 (282)
T ss_pred ceeecCccccccccc---ccccHHHHHHHHHHhcCCCEEEeecceEEeccccCCCHHHHHhcCCHHHheeeeeccCCcCc
Confidence 999997766655432 22233456666666677999999999888776642 333344555889999999977752
Q ss_pred -C---CCCCCCcC--CHHHHHHHHHHHHHhCCCCCCccccccc
Q 037393 372 -G---WDTDQFLT--DIGEATSIMLSVIKNGGLAPGGFNFDAK 408 (503)
Q Consensus 372 -G---wd~Dqf~~--~~~e~~~~m~~iLk~gG~~~Ggi~FDak 408 (503)
| .||-.-|+ .+|...+..+. .-|..+=-+-.|.+
T Consensus 212 ~G~LlIDTHg~pV~~~VW~Ll~~a~a---~~gp~ptllErD~~ 251 (282)
T COG3220 212 EGELLIDTHGAPVKDEVWDLLEAAYA---RLGPRPTLLERDFN 251 (282)
T ss_pred CCceeeecCCCccchhHHHHHHHHHH---hcCCCCeeeeeccC
Confidence 1 34433333 55655444443 22334445566743
No 78
>COG3622 Hfi Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=63.42 E-value=1.9e+02 Score=29.99 Aligned_cols=153 Identities=19% Similarity=0.242 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccC-CCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCC
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHD-RDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHG 220 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD-~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~G 220 (503)
..+-.+.-++.|++--+-||.+.+ |- .=+.|.+.+-.+....+-+=+.+..++. ..||+++--.-|.+.+|-|-.+
T Consensus 79 r~~~fr~~v~~a~~ya~aLg~~~v--h~mag~~p~~~~~~~~~~t~venLr~aAd~l~~~gi~~liEplN~~d~PG~~l~ 156 (260)
T COG3622 79 REEEFRLGVALAIEYATALGCKQV--HCLAGIPPEGVDTEAMWATFVENLRYAADLLAAEGIRLLIEPLNLRDMPGYFLT 156 (260)
T ss_pred chHHHHhHHHHHHHHHHHhCCCce--eeeecCCCCCccHHHHHHHHHHHHHHHHHHHHhcCCEEEEecCCCCCCCCcccc
Confidence 344567788889999999997664 21 1235688887776555444344555555 9999999999999999887655
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCC---CCHHHHHHHHHHHHH----------------
Q 037393 221 AATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLN---TDMGREIDHMANFFE---------------- 281 (503)
Q Consensus 221 A~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~q---tD~~~~~d~l~e~l~---------------- 281 (503)
. ...++.+.++.|..|+-+=.- =| -.| -|+.+..++....+.
T Consensus 157 ~---------------~~~al~li~~V~~~Nl~lq~D--~Y--H~Q~~eGnL~~~lr~~~~~ighvQiAdvP~RhEPgtG 217 (260)
T COG3622 157 S---------------QEQALALIDEVGRPNLFLQLD--LY--HAQIMEGNLTRLLREYLPKIGHVQIADVPGRHEPGTG 217 (260)
T ss_pred c---------------HHHHHHHHHHhCCCCeEeehh--HH--HHHHhccHHHHHHHHhhhhhceeeecCCCCCCCCCCC
Confidence 4 345677788888888755221 00 000 122222222221111
Q ss_pred -----HHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHh
Q 037393 282 -----SAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKY 324 (503)
Q Consensus 282 -----~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~ 324 (503)
-+.+.-.++||++-|.-||||.- ++...|++++++
T Consensus 218 EINY~~lf~~l~~~GY~GwIGcEy~p~g--------~T~~gL~wf~~~ 257 (260)
T COG3622 218 EINYPYLFKALDAMGYDGWIGCEYKPRG--------DTEAGLGWFRPY 257 (260)
T ss_pred ccccHHHHHHHHHcCCCCceeeeeccCC--------CchHHHHHHHHh
Confidence 12333445788888888888876 566667666543
No 79
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=62.69 E-value=43 Score=34.72 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=60.7
Q ss_pred HHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceee-eeccCCCCCccccCCCCCCCCHHHHHHHHHHH
Q 037393 159 DKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPL-WGTAQLFSHPRYMHGAATSSEVAVYAYAAAQV 237 (503)
Q Consensus 159 ~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~-~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~v 237 (503)
-+||++.+++| +..|...+ .+.+.++.+..+...+.|+.+. |..|+ .|.++++ +.+..+.+
T Consensus 107 i~lgadAV~~~----Vy~Gse~e--~~~i~~~~~v~~~a~~~Gmp~v~~~YpR---g~~~~~~---------~~~d~~~v 168 (265)
T COG1830 107 IRLGADAVGAT----VYVGSETE--REMIENISQVVEDAHELGMPLVAWAYPR---GPAIKDE---------YHRDADLV 168 (265)
T ss_pred HhCCCcEEEEE----EecCCcch--HHHHHHHHHHHHHHHHcCCceEEEEecc---CCccccc---------ccccHHHH
Confidence 38999999997 33443333 3344444445555558888754 46544 3444444 33455667
Q ss_pred HHHHHHHHHhCCCeEEE-ccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037393 238 KKAMEVTHYLGGENYVF-WGGREGYQSLLNTDMGREIDHMANFFESAAAYKK 288 (503)
Q Consensus 238 kraiDia~eLGa~~~v~-WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~ 288 (503)
..|..++.+|||+.+.. |+| ++ +.|+.++++++
T Consensus 169 ~~aaRlaaelGADIiK~~ytg--------~~----------e~F~~vv~~~~ 202 (265)
T COG1830 169 GYAARLAAELGADIIKTKYTG--------DP----------ESFRRVVAACG 202 (265)
T ss_pred HHHHHHHHHhcCCeEeecCCC--------Ch----------HHHHHHHHhCC
Confidence 77788999999998754 444 22 88999999966
No 80
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.43 E-value=1.8e+02 Score=29.27 Aligned_cols=128 Identities=12% Similarity=0.125 Sum_probs=75.3
Q ss_pred HHHHhCCceecccCCCCCCCC--CCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHH
Q 037393 157 FIDKLGVDFWCFHDRDIAPDG--ETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYA 233 (503)
Q Consensus 157 ~l~kLG~~~~~fHD~Dl~P~g--~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~A 233 (503)
.+.+-|++.+..-=.---|.. .+.++..+++. ..++.++ ..++.+ ++-+.+|+|-+.|
T Consensus 32 ~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~---~~v~~l~~~~~~pi----------------SIDT~~~~v~~aa 92 (258)
T cd00423 32 RMVEEGADIIDIGGESTRPGAEPVSVEEELERVI---PVLRALAGEPDVPI----------------SVDTFNAEVAEAA 92 (258)
T ss_pred HHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHH---HHHHHHHhcCCCeE----------------EEeCCcHHHHHHH
Confidence 567889988855321112221 12333333344 4566665 334432 2346778888888
Q ss_pred HHHH-------------HHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCc-eEEec
Q 037393 234 AAQV-------------KKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKG-NLLIE 299 (503)
Q Consensus 234 i~~v-------------kraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~-~~~IE 299 (503)
++.. .+.++++++.|+..+++-....|=.-.-..+|..-.+...+.++..++.+.+.|++- ++.|-
T Consensus 93 L~~g~~iINdis~~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilD 172 (258)
T cd00423 93 LKAGADIINDVSGGRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILD 172 (258)
T ss_pred HHhCCCEEEeCCCCCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 7542 456788999999988887543332111123345556666677777777777788643 78887
Q ss_pred cCCC
Q 037393 300 PKPQ 303 (503)
Q Consensus 300 PKP~ 303 (503)
|=..
T Consensus 173 Pg~g 176 (258)
T cd00423 173 PGIG 176 (258)
T ss_pred CCCC
Confidence 7554
No 81
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=62.37 E-value=14 Score=37.75 Aligned_cols=173 Identities=17% Similarity=0.237 Sum_probs=87.6
Q ss_pred cccceeeeeccccCC-------------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCC
Q 037393 108 DWMRFSVAFWHTFRG-------------TGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIA 174 (503)
Q Consensus 108 ~~lrFsv~~Wht~~~-------------~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~ 174 (503)
|-+||+.|-+ ++.. .|.++|=+||.. -+...+.++++-++.+++||++.+++-|--+.
T Consensus 39 D~~K~g~Gt~-~l~~~~~l~eki~l~~~~gV~v~~GGtl~--------E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~ 109 (244)
T PF02679_consen 39 DFLKFGWGTS-ALYPEEILKEKIDLAHSHGVYVYPGGTLF--------EVAYQQGKFDEYLEECKELGFDAIEISDGTID 109 (244)
T ss_dssp SEEEE-TTGG-GGSTCHHHHHHHHHHHCTT-EEEE-HHHH--------HHHHHTT-HHHHHHHHHHCT-SEEEE--SSS-
T ss_pred cEEEecCcee-eecCHHHHHHHHHHHHHcCCeEeCCcHHH--------HHHHhcChHHHHHHHHHHcCCCEEEecCCcee
Confidence 3457777776 4443 466666667762 24455778999999999999999998665432
Q ss_pred CCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 037393 175 PDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGA-ATSSEVAVYAYAAAQVKKAMEVTHYLGGENYV 253 (503)
Q Consensus 175 P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA-~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v 253 (503)
-+.+++. ++++...+.|+++..-.- .|+.. ....+ -...++++++.+|. ||..+.
T Consensus 110 ---l~~~~r~-------~~I~~~~~~Gf~v~~EvG-------~K~~~~~~~~~---~~~~i~~~~~dLeA----GA~~Vi 165 (244)
T PF02679_consen 110 ---LPEEERL-------RLIRKAKEEGFKVLSEVG-------KKDPESDFSLD---PEELIEQAKRDLEA----GADKVI 165 (244)
T ss_dssp -----HHHHH-------HHHHHHCCTTSEEEEEES--------SSHHHHTT-----CCHHHHHHHHHHHH----TECEEE
T ss_pred ---CCHHHHH-------HHHHHHHHCCCEEeeccc-------CCCchhcccCC---HHHHHHHHHHHHHC----CCCEEE
Confidence 1222222 244555588988887632 11111 11111 12456677777765 776666
Q ss_pred EccCCc---C-cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCC
Q 037393 254 FWGGRE---G-YQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLIND 329 (503)
Q Consensus 254 ~WgGrE---G-ydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~ 329 (503)
+=+--- | |+...+.+ .+.+..+++. +|. -++..|-=.+ ..-.-|++++| .+
T Consensus 166 iEarEsG~~Gi~~~~g~~r--------~d~v~~i~~~---~~~-~~lifEAp~k-----------~qq~~~I~~~G--~~ 220 (244)
T PF02679_consen 166 IEARESGKGGIYDNDGEVR--------TDLVEKIIER---LGL-EKLIFEAPQK-----------EQQEWFIKRFG--PN 220 (244)
T ss_dssp E--TTT--STTB-TTS-B---------HHHHHHHHTT---S-G-GGEEEE--SH-----------HHHHHHHHHH---TT
T ss_pred EeeeccCCCCccCCCCCcc--------HHHHHHHHHh---CCH-hHEEEeCCCH-----------hHHHHHHHHhC--CC
Confidence 643311 3 32222222 2334444433 443 2777775332 45567899999 45
Q ss_pred cee-eccccc
Q 037393 330 FKL-NIECNH 338 (503)
Q Consensus 330 ~gV-niD~gH 338 (503)
|-| ||+..+
T Consensus 221 VNLgNI~~~e 230 (244)
T PF02679_consen 221 VNLGNIAPSE 230 (244)
T ss_dssp --EEEEEGGG
T ss_pred cCcccCCHHH
Confidence 888 888775
No 82
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=62.08 E-value=2.4e+02 Score=30.61 Aligned_cols=95 Identities=9% Similarity=0.090 Sum_probs=62.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCc-cc----cHHHHHHHHHHhCCCCCceeecccccc
Q 037393 265 LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQY-DW----DAATAANFLRKYGLINDFKLNIECNHA 339 (503)
Q Consensus 265 ~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y-~~----dvgt~l~fl~~~gl~~~~gVniD~gHa 339 (503)
-+.|-.+.|++|+.||++|+--|.+.|+ +++|-|. +|---.+ +| +.+..-.+++.+..|. =|+|+=.|-.
T Consensus 179 ~~Id~~~L~~nL~yFL~~ViPVAEe~gV--kmaiHPD--DPP~pi~GLpRIvst~ed~~~ll~~vdSp~-NGiTlCtGS~ 253 (362)
T COG1312 179 GGIDEEKLWENLAYFLKEVIPVAEEVGV--KMAIHPD--DPPWPIFGLPRIVSTIEDYQRLLEMVDSPY-NGITLCTGSL 253 (362)
T ss_pred cCCCHHHHHHHHHHHHHhhcchHHhcCc--eEEeCCC--CCCccccCcchhcCCHHHHHHHHHhccCcc-CCEEEecccc
Confidence 4789999999999999999999999987 8898764 3332233 34 4444445556667664 5888877753
Q ss_pred cc-cCCCHHHHHHHHHHcCCeeEEecCC
Q 037393 340 TL-SGHSCHHDIETARLNGLLGNIDANT 366 (503)
Q Consensus 340 ~l-AG~n~ah~va~A~~~gkLg~ihlNd 366 (503)
.. +..+....+..-.+ +..-+|+-+
T Consensus 254 G~~~dnDl~~mir~F~~--rI~F~H~Rn 279 (362)
T COG1312 254 GARADNDLPEMIREFAS--RIHFVHLRN 279 (362)
T ss_pred ccCccccHHHHHHHHhh--hchhhhhhh
Confidence 22 22344443333333 777777755
No 83
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=60.70 E-value=6.7 Score=41.90 Aligned_cols=52 Identities=23% Similarity=0.526 Sum_probs=34.2
Q ss_pred ceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCC
Q 037393 111 RFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGET 179 (503)
Q Consensus 111 rFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t 179 (503)
|...++. .+-..|.+||..+-. +- +. ..|.++++|.+-+-|||+|++|+.+-
T Consensus 181 rL~y~iy-VieQ~g~~~FNRakL----------~N-VG-----f~eAlkd~~wdCfIFHDVDllPenDr 232 (372)
T KOG3916|consen 181 RLDYRIY-VIEQAGNKPFNRAKL----------LN-VG-----FLEALKDYGWDCFIFHDVDLLPENDR 232 (372)
T ss_pred hhceeEE-EEEecCCCcccHHHh----------hh-hH-----HHHHHHhcCCCEEEEecccccccCCC
Confidence 4445554 445677777776654 11 11 23456778999999999999998753
No 84
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=60.39 E-value=1.2e+02 Score=31.99 Aligned_cols=198 Identities=15% Similarity=0.129 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhCCceecc---cCCCCCCCC------CCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcc---
Q 037393 149 RRMRANFEFIDKLGVDFWCF---HDRDIAPDG------ETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPR--- 216 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~f---HD~Dl~P~g------~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~pr--- 216 (503)
.+++..++++.+.|+..+-+ .|.=.+... .........+..+-++++.+.+.||-+..- --.|.||.
T Consensus 13 ~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IAR-Iv~FkD~~la~ 91 (316)
T PF13200_consen 13 ERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIAR-IVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEE-EEEecChHHhh
Confidence 36778889999999988876 222222221 111111222223334566666889877655 23355552
Q ss_pred --------------ccC---CCCCCC-CHHHHHHHHHHHHHHHHHHHHhCCCeEE----EccC---CcCcCCCCCCCHHH
Q 037393 217 --------------YMH---GAATSS-EVAVYAYAAAQVKKAMEVTHYLGGENYV----FWGG---REGYQSLLNTDMGR 271 (503)
Q Consensus 217 --------------fk~---GA~TnP-D~~VRa~Ai~~vkraiDia~eLGa~~~v----~WgG---rEGydy~~qtD~~~ 271 (503)
|.+ -+++|| +++|++|-++.++++. ++|=+.+- =.|. .++..|..+..-..
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa----~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~ 167 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAA----KLGFDEIQFDYIRFPDEGRLSGLDYSENDTEES 167 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHH----HcCCCEEEeeeeecCCCCcccccccCCCCCcch
Confidence 111 236676 6899999999888854 56877544 4666 44556666666666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHH
Q 037393 272 EIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIE 351 (503)
Q Consensus 272 ~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va 351 (503)
..+-+.+||+.+.+..+..|..+-.- -||.+.-..-...-|.+++. ++
T Consensus 168 r~~aI~~Fl~~a~~~l~~~~v~vSaD-------------------------------VfG~~~~~~~~~~iGQ~~~~-~a 215 (316)
T PF13200_consen 168 RVDAITDFLAYAREELHPYGVPVSAD-------------------------------VFGYVAWSPDDMGIGQDFEK-IA 215 (316)
T ss_pred HHHHHHHHHHHHHHHHhHcCCCEEEE-------------------------------ecccccccCCCCCcCCCHHH-Hh
Confidence 77888888888888776665422221 13333222122345555555 33
Q ss_pred HHHHc--CCeeEEecCCCCCCCCCCCCCCc-CCHHHHHHH
Q 037393 352 TARLN--GLLGNIDANTGDPQVGWDTDQFL-TDIGEATSI 388 (503)
Q Consensus 352 ~A~~~--gkLg~ihlNdg~~q~Gwd~Dqf~-~~~~e~~~~ 388 (503)
--.+. .|+.-=|++.|.. |.+ .| .+|++++..
T Consensus 216 ~~vD~IsPMiYPSh~~~g~~--g~~---~P~~~PY~~v~~ 250 (316)
T PF13200_consen 216 EYVDYISPMIYPSHYGPGFF--GID---KPDLEPYEIVYR 250 (316)
T ss_pred hhCCEEEecccccccCcccC--CCC---CcccChHHHHHH
Confidence 33333 7788888888743 222 23 377777554
No 85
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=59.87 E-value=43 Score=34.39 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 237 VKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 237 vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
..+.++.+.+.|.+.+.+...-- +.-.+.++++-.++..+-+..+++|+++.|....+.+|-
T Consensus 76 ~~~~~~~A~~~g~~~i~i~~~~S--~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d 137 (280)
T cd07945 76 GDKSVDWIKSAGAKVLNLLTKGS--LKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED 137 (280)
T ss_pred cHHHHHHHHHCCCCEEEEEEeCC--HHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe
Confidence 34568888888999888876411 112222333445666666777788999999999999995
No 86
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.69 E-value=51 Score=32.44 Aligned_cols=110 Identities=15% Similarity=0.100 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhC-------CceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCc
Q 037393 143 SMAMAKRRMRANFEFIDKLG-------VDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHP 215 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG-------~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~p 215 (503)
+..+.|.|.+..|+-=+=+| +=-.|+||-.-.+. .++++..+||++++..+++...++-++.|.|+-=. |
T Consensus 28 ~~~~lr~k~e~~f~~D~ll~gg~~DVIi~Ns~LWDl~ry~~-~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv--~ 104 (183)
T cd01842 28 SSSQLKAKGELSFENDVLLEGGRLDLVIMNSCLWDLSRYQR-NSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPV--A 104 (183)
T ss_pred cHHHHhhhhhhhhccceeecCCceeEEEEecceecccccCC-CCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCC--C
Confidence 34556667766665433332 12357788887764 59999999999999888887777899999987633 4
Q ss_pred cccCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEc
Q 037393 216 RYMHGAATSSE-----VAVYAYAAAQVKKAMEVTHYLGGENYVFW 255 (503)
Q Consensus 216 rfk~GA~TnPD-----~~VRa~Ai~~vkraiDia~eLGa~~~v~W 255 (503)
.-..|+|.-|. ..+|..+++.-.-|..++++-|-+..-+|
T Consensus 105 ~~~~ggfl~~~~~~~~~~lr~dv~eaN~~A~~va~~~~~dVlDLh 149 (183)
T cd01842 105 EEIKGGFLLPELHDLSKSLRYDVLEGNFYSATLAKCYGFDVLDLH 149 (183)
T ss_pred cCCcCceeccccccccccchhHHHHHHHHHHHHHHHcCceeeehH
Confidence 55556655442 33677788888888888888765544443
No 87
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=58.58 E-value=1.7e+02 Score=29.80 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHH----hcCCceeeeeccCCCCCccccCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKEL----QGTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l----~~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.++...++.+.++||+++++--.-.-=+.-+.+|.+.-++-+.++++++ .+.||+|..+ |....
T Consensus 39 ~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~i------------G~~~~ 106 (241)
T PRK14842 39 NAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETRLDTIHARGIRIHHS------------GSRKK 106 (241)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE------------eChhh
Confidence 3677888999999999998832222234567788777777666665553 2679999877 66666
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAY 286 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dy 286 (503)
-.++|+ +.++++.+.++.-.+-.+.+-.+..| .+.++++++.++.-
T Consensus 107 Lp~~l~----~~i~~~e~~T~~~~~~~Lnia~~Ygg------------r~EI~~A~~~~~~~ 152 (241)
T PRK14842 107 LTRTVL----DKIDFAMAKTKKNKNLTVNFCLNYGS------------HDELLRAAQEVFLA 152 (241)
T ss_pred CCHHHH----HHHHHHHHHhcCCCceEEEEEecCCC------------HHHHHHHHHHHHHH
Confidence 666665 45677778887766667777666444 22345666666644
No 88
>PRK08227 autoinducer 2 aldolase; Validated
Probab=57.53 E-value=51 Score=33.93 Aligned_cols=72 Identities=11% Similarity=0.058 Sum_probs=48.5
Q ss_pred HhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHH
Q 037393 160 KLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKK 239 (503)
Q Consensus 160 kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkr 239 (503)
+||.+.|.+|= ..|... | .+.+.++.+...+..+.|+-++... |+ |.-.+.+++ .+..
T Consensus 105 rlGAdAV~~~v----~~Gs~~-E-~~~l~~l~~v~~ea~~~G~Plla~~------pr---G~~~~~~~~-------~ia~ 162 (264)
T PRK08227 105 RLNACAVAAQV----FIGSEY-E-HQSIKNIIQLVDAGLRYGMPVMAVT------AV---GKDMVRDAR-------YFSL 162 (264)
T ss_pred HCCCCEEEEEE----ecCCHH-H-HHHHHHHHHHHHHHHHhCCcEEEEe------cC---CCCcCchHH-------HHHH
Confidence 78999998873 244322 2 3455555556666668899887753 33 554333444 7788
Q ss_pred HHHHHHHhCCCeEE
Q 037393 240 AMEVTHYLGGENYV 253 (503)
Q Consensus 240 aiDia~eLGa~~~v 253 (503)
|..++.+|||+.+.
T Consensus 163 aaRiaaELGADiVK 176 (264)
T PRK08227 163 ATRIAAEMGAQIIK 176 (264)
T ss_pred HHHHHHHHcCCEEe
Confidence 89999999999776
No 89
>PRK07534 methionine synthase I; Validated
Probab=56.44 E-value=1.4e+02 Score=31.69 Aligned_cols=155 Identities=12% Similarity=0.032 Sum_probs=85.5
Q ss_pred HHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---eEEEccC--CcCcCC-C-C
Q 037393 193 LAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGE---NYVFWGG--REGYQS-L-L 265 (503)
Q Consensus 193 ~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~---~~v~WgG--rEGydy-~-~ 265 (503)
.-++..+.|..+.. +|.|+-.....+... ..+.+.+..++++++|++.-.+ .+-+.+. -=|-.+ + .
T Consensus 50 vH~~Yl~AGAdiI~--TnTy~as~~~l~~~~-----~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~ 122 (336)
T PRK07534 50 LHQGFVDAGSDIIL--TNSFGGTAARLKLHD-----AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMG 122 (336)
T ss_pred HHHHHHHhcCCEEE--ecCcccCHHHHHhcC-----cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCC
Confidence 34455577766554 666764332222211 1234566666666666665321 2223322 112111 1 1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCC
Q 037393 266 NTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHS 345 (503)
Q Consensus 266 qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n 345 (503)
..+..+..+.+.+-++.+.+ -|.| -|++|-=|.-. -+-.++..+++.+.|=-+.++++-+..++.|++
T Consensus 123 ~~~~~e~~~~~~~qi~~l~~----~gvD-~l~~ET~p~l~-------E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~ 190 (336)
T PRK07534 123 ALTHALAVEAFHEQAEGLKA----GGAD-VLWVETISAPE-------EIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLT 190 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHh----CCCC-EEEEeccCCHH-------HHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCc
Confidence 23444455555544444433 4555 67787444221 255666667888888777888877666899999
Q ss_pred HHHHHHHHHHcC-CeeEEecCC
Q 037393 346 CHHDIETARLNG-LLGNIDANT 366 (503)
Q Consensus 346 ~ah~va~A~~~g-kLg~ihlNd 366 (503)
++..+..+...+ .+..|=+|=
T Consensus 191 ~~~~~~~~~~~~~~~~avGvNC 212 (336)
T PRK07534 191 PADLADLVEKLGEPPLAFGANC 212 (336)
T ss_pred HHHHHHHHHhcCCCceEEEecC
Confidence 999888876544 345666776
No 90
>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2.1.1.10 from EC from Escherichia coli accepts selenohomocysteine as a substrate. S-methylmethionine is an abundant plant product that can be utilised for methionine biosynthesis []. Human methionine synthase (5-methyltetrahydrofolate:L-homocysteine S-transmethylase; 2.1.1.13 from EC) shares 53 and 63% identity with the E. coli and the presumptive Caenorhabditis elegans proteins, respectively, and contains all residues implicated in B12 binding to the E. coli protein []. Betaine--homocysteine S-methyltransferase (2.1.1.5 from EC) converts betaine and homocysteine to dimethylglycine and methionine, respectively. This reaction is also required for the irreversible oxidation of choline [].; GO: 0008898 homocysteine S-methyltransferase activity; PDB: 1UMY_A 1LT8_B 1LT7_B 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B 1Q8J_B ....
Probab=55.36 E-value=1.7e+02 Score=29.92 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=90.3
Q ss_pred HHHHHHHHhcCCceeeeeccCCCCCccccCC--CCCCCC-HHHHHHHHHHHHHHHHHHHHhCCCeEEEcc--CCc-----
Q 037393 190 VVALAKELQGTKVRPLWGTAQLFSHPRYMHG--AATSSE-VAVYAYAAAQVKKAMEVTHYLGGENYVFWG--GRE----- 259 (503)
Q Consensus 190 i~~~lk~l~~tGvkl~~~tanlF~~prfk~G--A~TnPD-~~VRa~Ai~~vkraiDia~eLGa~~~v~Wg--GrE----- 259 (503)
|.+.-++....|-.+. ++|.|+-.+.+.+ .+.+-. .++-+.|++.+++|.+-.. -++.+-+.+ |.=
T Consensus 43 v~~iH~~yl~AGAdiI--~TnTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~a~~~~~--~~~~~~VaGsiGP~ga~l~ 118 (305)
T PF02574_consen 43 VRQIHRDYLEAGADII--TTNTYQASRERLKEYGLSDEEAEELNRAAVELAREAADEYG--SGRKVLVAGSIGPYGAYLS 118 (305)
T ss_dssp HHHHHHHHHHHT-SEE--EEC-TT-SHHHHGGGT-GGGCHHHHHHHHHHHHHHHHTT-----TT-SEEEEEEE--S----
T ss_pred HHHHHHHHHHCCCCeE--EecCCcCchhhhhhcCCcHHHHHHHHHHHHHHHHHHHhhcc--CCCccEEEEEcccccccch
Confidence 3334556657777744 4677774443332 345545 5666667777777666633 111222222 111
Q ss_pred CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec--cCCCCCCCCCccccHHHHHHHHHH-hCCCCCceeeccc
Q 037393 260 GYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE--PKPQEPTKHQYDWDAATAANFLRK-YGLINDFKLNIEC 336 (503)
Q Consensus 260 Gydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE--PKP~EP~~h~y~~dvgt~l~fl~~-~gl~~~~gVniD~ 336 (503)
|.+|..+-+ ...+.+.++.++-++.-.+.|+| -|++| |...| +-.++..+++ .+.|-.+.+++..
T Consensus 119 g~~y~~~~~--~~~~~~~~~~~~q~~~l~~~gvD-~l~~ET~~~~~E---------~~aa~~a~~~~~~~p~~is~~~~~ 186 (305)
T PF02574_consen 119 GSEYPGDYG--LSFEELRDFHREQAEALADAGVD-LLLFETMPSLAE---------AKAALEAIKEVTGLPVWISFSCKD 186 (305)
T ss_dssp ----CTTCT--T-HHHHHHHHHHHHHHHHHTT-S-EEEEEEEC-CSC---------HHHHHHHHHHHHHCCSSEEE-EEE
T ss_pred hhhcccccc--ccHHHHHHHHHHHHHHHHhcCCC-EEEEecCcHHHH---------HHHHHHHHHhhhhhhceeccchhh
Confidence 244444332 23336666666666655556776 78899 77777 7778888888 8888777888887
Q ss_pred ccccccCCCHHHHHHHHHHc-----CCeeEEecCC
Q 037393 337 NHATLSGHSCHHDIETARLN-----GLLGNIDANT 366 (503)
Q Consensus 337 gHa~lAG~n~ah~va~A~~~-----gkLg~ihlNd 366 (503)
+..+..|+++...+..+... .....|=+|=
T Consensus 187 ~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~iGvNC 221 (305)
T PF02574_consen 187 SGRLRDGTSLEDAVQVIDELLRALPPGPDAIGVNC 221 (305)
T ss_dssp EES-TCTTBCTTSHHHHHHHHHHHCTT-SEEEEES
T ss_pred hccccCCCCHHHHHHHHHHHHHHhhhhhheEEcCC
Confidence 77688999998888877776 4566666776
No 91
>PLN02489 homocysteine S-methyltransferase
Probab=54.13 E-value=86 Score=33.07 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhC--CCCCceeecccccccccCCCHHHHHH
Q 037393 274 DHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYG--LINDFKLNIECNHATLSGHSCHHDIE 351 (503)
Q Consensus 274 d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~g--l~~~~gVniD~gHa~lAG~n~ah~va 351 (503)
+.+.+..+.-++.-.+-|.| -|++|-=|.-. -+-.++..+++.+ .|--+.++++-+..+..|++++..+.
T Consensus 163 ~e~~~~~~~qi~~l~~~gvD-~i~~ET~~~l~-------E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~ 234 (335)
T PLN02489 163 EKLKDFHRRRLQVLAEAGPD-LIAFETIPNKL-------EAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECAS 234 (335)
T ss_pred HHHHHHHHHHHHHHHhCCCC-EEEEeccCChH-------HHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHH
Confidence 34444444444433345665 67787444221 1445556667664 45445566666666899999999877
Q ss_pred HHHHcCCeeEEecCC
Q 037393 352 TARLNGLLGNIDANT 366 (503)
Q Consensus 352 ~A~~~gkLg~ihlNd 366 (503)
.+.....+..|=+|=
T Consensus 235 ~~~~~~~~~~iGiNC 249 (335)
T PLN02489 235 IADSCKKVVAVGINC 249 (335)
T ss_pred HHHhcCCceEEEecC
Confidence 765444567777777
No 92
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=52.69 E-value=2.6e+02 Score=29.76 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHHHHhCCceecc---cCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccc-------cCCCC
Q 037393 153 ANFEFIDKLGVDFWCF---HDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRY-------MHGAA 222 (503)
Q Consensus 153 ~afe~l~kLG~~~~~f---HD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prf-------k~GA~ 222 (503)
+.|+.|++.|+.+|-+ ++|.- .|.. +++.+++.+|+..+.|++++- +++....+ +--+-
T Consensus 28 d~~~ilk~~G~N~vRlRvwv~P~~--~g~~------~~~~~~~~akrak~~Gm~vll---dfHYSD~WaDPg~Q~~P~aW 96 (332)
T PF07745_consen 28 DLFQILKDHGVNAVRLRVWVNPYD--GGYN------DLEDVIALAKRAKAAGMKVLL---DFHYSDFWADPGKQNKPAAW 96 (332)
T ss_dssp -HHHHHHHTT--EEEEEE-SS-TT--TTTT------SHHHHHHHHHHHHHTT-EEEE---EE-SSSS--BTTB-B--TTC
T ss_pred CHHHHHHhcCCCeEEEEeccCCcc--cccC------CHHHHHHHHHHHHHCCCeEEE---eecccCCCCCCCCCCCCccC
Confidence 5678999999999987 55553 2322 222333344444488888762 34443333 33444
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHhCCC--eEEEccC-CcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEe
Q 037393 223 TS-SEVAVYAYAAAQVKKAMEVTHYLGGE--NYVFWGG-REGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLI 298 (503)
Q Consensus 223 Tn-PD~~VRa~Ai~~vkraiDia~eLGa~--~~v~WgG-rEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~I 298 (503)
.+ .-.++-...-++++..|..-+.-|.. .|.+.-- .-|.-.+... ...|+++++.|+...+..++.+.+.++.|
T Consensus 97 ~~~~~~~l~~~v~~yT~~vl~~l~~~G~~pd~VQVGNEin~Gmlwp~g~--~~~~~~~a~ll~ag~~AVr~~~p~~kV~l 174 (332)
T PF07745_consen 97 ANLSFDQLAKAVYDYTKDVLQALKAAGVTPDMVQVGNEINNGMLWPDGK--PSNWDNLAKLLNAGIKAVREVDPNIKVML 174 (332)
T ss_dssp TSSSHHHHHHHHHHHHHHHHHHHHHTT--ESEEEESSSGGGESTBTTTC--TT-HHHHHHHHHHHHHHHHTHSSTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCCCccEEEeCccccccccCcCCC--ccCHHHHHHHHHHHHHHHHhcCCCCcEEE
Confidence 44 44566677788999999999998876 3333221 1143333323 56788999999999998888887778877
Q ss_pred ccCCCCCCCCCccccHHHHHHHHHHh
Q 037393 299 EPKPQEPTKHQYDWDAATAANFLRKY 324 (503)
Q Consensus 299 EPKP~EP~~h~y~~dvgt~l~fl~~~ 324 (503)
=-.-.. +.+..--|...+
T Consensus 175 H~~~~~--------~~~~~~~~f~~l 192 (332)
T PF07745_consen 175 HLANGG--------DNDLYRWFFDNL 192 (332)
T ss_dssp EES-TT--------SHHHHHHHHHHH
T ss_pred EECCCC--------chHHHHHHHHHH
Confidence 654433 455555555443
No 93
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=52.59 E-value=95 Score=30.31 Aligned_cols=109 Identities=16% Similarity=0.113 Sum_probs=55.4
Q ss_pred HHHHHHHhCCceecccCCC---CCCCCCCHHHHHHhHHHHHHHHHHHhcC--CceeeeeccCCCCCccccCCCCCCCCHH
Q 037393 154 NFEFIDKLGVDFWCFHDRD---IAPDGETLKEANANLDEVVALAKELQGT--KVRPLWGTAQLFSHPRYMHGAATSSEVA 228 (503)
Q Consensus 154 afe~l~kLG~~~~~fHD~D---l~P~g~t~~e~~~nl~~i~~~lk~l~~t--Gvkl~~~tanlF~~prfk~GA~TnPD~~ 228 (503)
.++.+.++|++++++=.+. .+|.-.+..+ .++++.+. ++++...+.| |
T Consensus 24 i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~----------~i~~l~~~~~~~~~~~l~~~---------~-------- 76 (265)
T cd03174 24 IAEALDEAGVDSIEVGSGASPKAVPQMEDDWE----------VLRAIRKLVPNVKLQALVRN---------R-------- 76 (265)
T ss_pred HHHHHHHcCCCEEEeccCcCccccccCCCHHH----------HHHHHHhccCCcEEEEEccC---------c--------
Confidence 4568899999999993333 2344333332 22333322 4665333322 1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 229 VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 229 VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
++.++.+++.|.+.+.+=.. +.+.-.+.+..+-.+...+-+...++++++.|+...+.+|.
T Consensus 77 ---------~~~i~~a~~~g~~~i~i~~~--~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 137 (265)
T cd03174 77 ---------EKGIERALEAGVDEVRIFDS--ASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLED 137 (265)
T ss_pred ---------hhhHHHHHhCCcCEEEEEEe--cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 55667777778776655443 21111111111222233444445555666677766777764
No 94
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=52.51 E-value=2.1e+02 Score=30.66 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--Ce
Q 037393 174 APDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG--EN 251 (503)
Q Consensus 174 ~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa--~~ 251 (503)
.+||.+.++..+-+ +...+.|+.+..+. |--|+- ..|++.+..|++.+++.+++++++|- +.
T Consensus 143 ~KFGi~~~~~~~~l-------~~~~~~~l~~~Gih--------~HiGS~-~~~~~~~~~a~~~~~~~~~~~~~~g~~l~~ 206 (394)
T cd06831 143 MKFGTTLKNCRHLL-------ECAKELDVQIVGVK--------FHVSSS-CKEYQTYVHALSDARCVFDMAEEFGFKMNM 206 (394)
T ss_pred CCCCCCHHHHHHHH-------HHHHHCCCeEEEEE--------EECCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCE
Confidence 36788877544322 22335578777662 333653 36888899999999999999999874 56
Q ss_pred EEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 252 YVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 252 ~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
+.+=||..|-+ .|+. .+.+.++.+.+..-..+.+.++.+||
T Consensus 207 ldiGGGf~~~~----~~~~----~~~~~i~~~l~~~~~~~~~~~li~EP 247 (394)
T cd06831 207 LDIGGGFTGSE----IQLE----EVNHVIRPLLDVYFPEGSGIQIIAEP 247 (394)
T ss_pred EEeCCCcCCCC----CCHH----HHHHHHHHHHHHhcCcCCCCEEEEeC
Confidence 66666654311 2443 34455544443211111234888876
No 95
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=50.38 E-value=44 Score=35.88 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHhCCceecccCCCC---CCCCCCHHHHHHhHHHHHHHHHHHh-c--CCceeeeec
Q 037393 145 AMAKRRMRANFEFIDKLGVDFWCFHDRDI---APDGETLKEANANLDEVVALAKELQ-G--TKVRPLWGT 208 (503)
Q Consensus 145 e~a~~r~~~afe~l~kLG~~~~~fHD~Dl---~P~g~t~~e~~~nl~~i~~~lk~l~-~--tGvkl~~~t 208 (503)
+.+-+++..+++..++||.+.+.+|---. .+...+.++.-+++.+-+..+.+.+ + .||++.--+
T Consensus 111 ~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp 180 (382)
T TIGR02631 111 RYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP 180 (382)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence 45556778899999999999998864321 1223334444333333222333333 3 367766653
No 96
>PF07498 Rho_N: Rho termination factor, N-terminal domain; InterPro: IPR011112 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers []. This domain is found to the N terminus of the RNA binding domain (IPR011113 from INTERPRO).; GO: 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=49.66 E-value=24 Score=26.37 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHhCCCCC-CCchhHHHHHHhhh
Q 037393 469 KADFEMLEKKAMEWGEPKV-PSAKQELAEMIFQS 501 (503)
Q Consensus 469 ~~~~~~l~~~a~~~~~~~~-~sg~qe~~e~~~n~ 501 (503)
.+++.+|.++|.+.|-+.. .=-|||++..|+..
T Consensus 4 ~~~~~eL~~iAk~lgI~~~~~~~K~eLI~~Il~~ 37 (43)
T PF07498_consen 4 SMTLSELREIAKELGIEGYSKMRKQELIFAILKA 37 (43)
T ss_dssp CS-HHHHHHHHHCTT-TTGCCS-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCCcCCHHHHHHHHHHH
Confidence 4689999999999995543 34699999999864
No 97
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=49.59 E-value=3e+02 Score=28.99 Aligned_cols=56 Identities=16% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCC-------CCC--------CCCCHHHHHHhHHHHHHHHHHHh
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRD-------IAP--------DGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~D-------l~P--------~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
-++...+..-+|-+...+.|+++|++|-.+ +-| .|-+++-+-+-+.+|++.+++-.
T Consensus 138 eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~v 208 (353)
T cd04735 138 EIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVI 208 (353)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 455566666677778888999999998533 223 56778877777888777776543
No 98
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=49.39 E-value=37 Score=34.66 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCC
Q 037393 187 LDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLN 266 (503)
Q Consensus 187 l~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~q 266 (503)
.+.+.+.++.|.+.||++ .||- .||++ .|+.|+++|++.+-|-.|.=. ..+.
T Consensus 112 ~~~l~~~i~~L~~~gIrV-----SLFi----------dP~~~-----------qi~~A~~~GAd~VELhTG~yA--~a~~ 163 (239)
T PRK05265 112 FDKLKPAIARLKDAGIRV-----SLFI----------DPDPE-----------QIEAAAEVGADRIELHTGPYA--DAKT 163 (239)
T ss_pred HHHHHHHHHHHHHCCCEE-----EEEe----------CCCHH-----------HHHHHHHhCcCEEEEechhhh--cCCC
Confidence 334444667777888874 2344 35554 688999999999999999321 1122
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCC
Q 037393 267 TDMGREIDHMANFFESAAAYKKKIGF 292 (503)
Q Consensus 267 tD~~~~~d~l~e~l~~v~dya~~iG~ 292 (503)
..-.++ .+-+..++.++.++|.
T Consensus 164 ~~~~~e----l~~~~~aa~~a~~lGL 185 (239)
T PRK05265 164 EAEAAE----LERIAKAAKLAASLGL 185 (239)
T ss_pred cchHHH----HHHHHHHHHHHHHcCC
Confidence 222333 3556667777777764
No 99
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=48.88 E-value=3.2e+02 Score=28.79 Aligned_cols=96 Identities=14% Similarity=0.019 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHH----HhcCCceeeeeccCCCCCccccCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKE----LQGTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~----l~~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.++.+.++.+.++||+++++-..=.-=+.-+.+|.+.-+.-+.+++++ +.+.||++.++ |....
T Consensus 98 ~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~~~~~~~~irir~i------------G~~~~ 165 (296)
T PRK14827 98 AVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDNLNKMGVRIRWV------------GSRPR 165 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE------------echhh
Confidence 367777888899999999883332222344555654444333333333 33789999998 66666
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
--++|++ .++++.+.++.-..-.+++-....|
T Consensus 166 Lp~~v~~----~i~~~e~~T~~n~~~~Lnia~~YgG 197 (296)
T PRK14827 166 LWRSVIN----ELAIAEEMTKSNDVITINYCVNYGG 197 (296)
T ss_pred CCHHHHH----HHHHHHHHhcCCCCeEEEEEecCCC
Confidence 6666653 4566677777766667777776555
No 100
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=48.66 E-value=2.6e+02 Score=30.16 Aligned_cols=135 Identities=15% Similarity=0.234 Sum_probs=83.1
Q ss_pred HHHHHHHHHhCCceecc---cCC---CCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeee--ccCCCCCccccC--CC
Q 037393 152 RANFEFIDKLGVDFWCF---HDR---DIAPDGETLKEANANLDEVVALAKELQGTKVRPLWG--TAQLFSHPRYMH--GA 221 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~f---HD~---Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~--tanlF~~prfk~--GA 221 (503)
.++|+.|+.-||.|+-+ .|| |=-+.|-.-.. +..+++..|+--..|+||+.- =.+.|.||.+.. -|
T Consensus 66 qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD----~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPakQ~kPka 141 (403)
T COG3867 66 QDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNND----LKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAKQKKPKA 141 (403)
T ss_pred HHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcch----HHHHHHHHHHHHhcCcEEEeeccchhhccChhhcCCcHH
Confidence 36788999999999988 332 33333322222 333443444444889998753 345566665543 33
Q ss_pred CCCCCHHHHHHHH-HHHHHHHHHHHHhCCC-----------eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 037393 222 ATSSEVAVYAYAA-AQVKKAMEVTHYLGGE-----------NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKK 289 (503)
Q Consensus 222 ~TnPD~~VRa~Ai-~~vkraiDia~eLGa~-----------~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~ 289 (503)
.-+-..+--++|+ +++|..|...+.-|.. +=-+|+--|| +.|+.|++.|.+.....++
T Consensus 142 W~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~----------~~f~k~a~L~n~g~~avre 211 (403)
T COG3867 142 WENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEG----------RNFDKMAALLNAGIRAVRE 211 (403)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCC----------cChHHHHHHHHHHhhhhhh
Confidence 5555555555554 6777788777776643 2347884443 2577777777777777777
Q ss_pred cCCCceEEecc
Q 037393 290 IGFKGNLLIEP 300 (503)
Q Consensus 290 iG~~~~~~IEP 300 (503)
..++.++.|--
T Consensus 212 v~p~ikv~lHl 222 (403)
T COG3867 212 VSPTIKVALHL 222 (403)
T ss_pred cCCCceEEEEe
Confidence 77777777754
No 101
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=48.42 E-value=1.5e+02 Score=30.64 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHH-------HHHhHHHHHHHHHHHhcCCceeeeeccCC----
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKE-------ANANLDEVVALAKELQGTKVRPLWGTAQL---- 211 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e-------~~~nl~~i~~~lk~l~~tGvkl~~~tanl---- 211 (503)
+++..|+ .++.|+.+|+..+-+|-.|-+|....++- +.+.+++|+++.+ +.||.|.-. -+.
T Consensus 15 ~~~~lk~----~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~---~~gI~vIPe-id~pGH~ 86 (301)
T cd06565 15 KVSYLKK----LLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAA---ELGIEVIPL-IQTLGHL 86 (301)
T ss_pred CHHHHHH----HHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHH---HcCCEEEec-CCCHHHH
Confidence 4676664 45699999999999999998876443321 2344555554444 667766533 111
Q ss_pred ---CCCccccC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHH------HHHH
Q 037393 212 ---FSHPRYMH--------GAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMG------REID 274 (503)
Q Consensus 212 ---F~~prfk~--------GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~------~~~d 274 (503)
..+|.|.. +.+.-.+|+..+..-+.+.+.+++-. + .++-=||-|=++ +...... ..-+
T Consensus 87 ~~~l~~~~~~~l~~~~~~~~~l~~~~~~t~~fi~~li~ev~~~f~---s-~~~HIG~DE~~~-~g~~~~~~~~~~~~~~~ 161 (301)
T cd06565 87 EFILKHPEFRHLREVDDPPQTLCPGEPKTYDFIEEMIRQVLELHP---S-KYIHIGMDEAYD-LGRGRSLRKHGNLGRGE 161 (301)
T ss_pred HHHHhCcccccccccCCCCCccCCCChhHHHHHHHHHHHHHHhCC---C-CeEEECCCcccc-cCCCHHHHHhcCCCHHH
Confidence 12333332 55666778888877777777777643 2 222334433222 1111111 2346
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 037393 275 HMANFFESAAAYKKKIGFK 293 (503)
Q Consensus 275 ~l~e~l~~v~dya~~iG~~ 293 (503)
-+.+.++.++++.++.|.+
T Consensus 162 l~~~~~~~v~~~v~~~g~~ 180 (301)
T cd06565 162 LYLEHLKKVLKIIKKRGPK 180 (301)
T ss_pred HHHHHHHHHHHHHHHcCCE
Confidence 6888999999999998864
No 102
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=48.37 E-value=45 Score=34.03 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCC
Q 037393 188 DEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNT 267 (503)
Q Consensus 188 ~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qt 267 (503)
+.+.+.++.+.+.|+++ .||- .||+ +.|+.|+++|++.+-|-.|.=. ..+..
T Consensus 110 ~~l~~~i~~l~~~gI~V-----SLFi----------DP~~-----------~qi~~A~~~GAd~VELhTG~YA--~a~~~ 161 (237)
T TIGR00559 110 DKLCELVKRFHAAGIEV-----SLFI----------DADK-----------DQISAAAEVGADRIEIHTGPYA--NAYNK 161 (237)
T ss_pred HHHHHHHHHHHHCCCEE-----EEEe----------CCCH-----------HHHHHHHHhCcCEEEEechhhh--cCCCc
Confidence 33444667777888874 3444 4554 4688999999999999999321 12221
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHhcCC
Q 037393 268 -DMGREIDHMANFFESAAAYKKKIGF 292 (503)
Q Consensus 268 -D~~~~~d~l~e~l~~v~dya~~iG~ 292 (503)
...++ .+-+..++.++.++|.
T Consensus 162 ~~~~~e----l~~i~~aa~~A~~lGL 183 (237)
T TIGR00559 162 KEMAEE----LQRIVKASVHAHSLGL 183 (237)
T ss_pred hhHHHH----HHHHHHHHHHHHHcCC
Confidence 11223 3446666777777654
No 103
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=48.28 E-value=11 Score=40.65 Aligned_cols=149 Identities=16% Similarity=0.152 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhCCCeEEE---ccCCcCcCC----CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 235 AQVKKAMEVTHYLGGENYVF---WGGREGYQS----LLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 235 ~~vkraiDia~eLGa~~~v~---WgGrEGydy----~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
+.+++.+|.++++|.+.+++ |-+..+-++ ....|. ++|-.+|+.++++.++.|++.=+-+||.--.|..
T Consensus 58 ~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~----~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S 133 (394)
T PF02065_consen 58 EKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDP----KKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDS 133 (394)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBT----TTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSS
T ss_pred HHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeECh----hhhCCcHHHHHHHHHHCCCeEEEEeccccccchh
Confidence 56778888889999999998 654221121 122333 3566799999999999999777777877444444
Q ss_pred CCc--cccHHHHHHHHHHhCCC---CCceeecccccccccCCCHHHHHHHHHHcCC-eeEEecCCCCCCCCCCCCCCcCC
Q 037393 308 HQY--DWDAATAANFLRKYGLI---NDFKLNIECNHATLSGHSCHHDIETARLNGL-LGNIDANTGDPQVGWDTDQFLTD 381 (503)
Q Consensus 308 h~y--~~dvgt~l~fl~~~gl~---~~~gVniD~gHa~lAG~n~ah~va~A~~~gk-Lg~ihlNdg~~q~Gwd~Dqf~~~ 381 (503)
..| .|||... .-+.+ .+-..-+|..|--...+-......+..+.|. -.-+|+|..-.+.|...-. ..
T Consensus 134 ~l~~~hPdw~l~-----~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~--~~ 206 (394)
T PF02065_consen 134 DLYREHPDWVLR-----DPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLP--EG 206 (394)
T ss_dssp CHCCSSBGGBTC-----CTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS---GH
T ss_pred HHHHhCccceee-----cCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCch--HH
Confidence 222 4665311 00000 1112235555532222222233345566674 7889999853322222111 22
Q ss_pred HHHHHHHHHHHHH
Q 037393 382 IGEATSIMLSVIK 394 (503)
Q Consensus 382 ~~e~~~~m~~iLk 394 (503)
....++.+|++++
T Consensus 207 ~~~~~~~~y~l~~ 219 (394)
T PF02065_consen 207 YHRYVLGLYRLLD 219 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444455666655
No 104
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=48.11 E-value=55 Score=33.28 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 238 KKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 238 kraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
++.+|.+.+.|.+.+.+...-. +...+.+.++-++...+.+..+++++++.|+...+.+|
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~S--~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~e 133 (262)
T cd07948 74 MDDARIAVETGVDGVDLVFGTS--PFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSE 133 (262)
T ss_pred HHHHHHHHHcCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 3457777888999888776411 11122233444556667777778888888988888887
No 105
>PRK06852 aldolase; Validated
Probab=47.22 E-value=62 Score=34.07 Aligned_cols=76 Identities=16% Similarity=0.121 Sum_probs=46.9
Q ss_pred hCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCC-CC-CCHHHHHHHHHHHH
Q 037393 161 LGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAA-TS-SEVAVYAYAAAQVK 238 (503)
Q Consensus 161 LG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~-Tn-PD~~VRa~Ai~~vk 238 (503)
||++.|.+|= + .|...+ .+.+.++.+...+..+.|+-++.. .|-.|.- .+ .|| +.+.
T Consensus 133 ~~AdAV~v~v---~-~Gs~~E--~~ml~~l~~v~~ea~~~GlPll~~--------~yprG~~i~~~~~~-------~~ia 191 (304)
T PRK06852 133 LNILGVGYTI---Y-LGSEYE--SEMLSEAAQIIYEAHKHGLIAVLW--------IYPRGKAVKDEKDP-------HLIA 191 (304)
T ss_pred CCceEEEEEE---e-cCCHHH--HHHHHHHHHHHHHHHHhCCcEEEE--------eeccCcccCCCccH-------HHHH
Confidence 5588998873 2 343322 345555555666666888887642 1333653 23 233 4667
Q ss_pred HHHHHHHHhCCCeEEE-ccC
Q 037393 239 KAMEVTHYLGGENYVF-WGG 257 (503)
Q Consensus 239 raiDia~eLGa~~~v~-WgG 257 (503)
.|+.+|.+|||+.+.. |++
T Consensus 192 ~aaRiaaELGADIVKv~y~~ 211 (304)
T PRK06852 192 GAAGVAACLGADFVKVNYPK 211 (304)
T ss_pred HHHHHHHHHcCCEEEecCCC
Confidence 7779999999998864 554
No 106
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=47.01 E-value=1.4e+02 Score=30.46 Aligned_cols=62 Identities=13% Similarity=0.173 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccC
Q 037393 238 KKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPK 301 (503)
Q Consensus 238 kraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPK 301 (503)
.+.++.+.+.|.+.+.+...-- |.-.+.++++-.++..+....+++++++.|...++.|++-
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~S--d~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~ 137 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSAS--ETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTA 137 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecC--HHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeE
Confidence 4456777788888877775421 1111223333345666667777788888998888777764
No 107
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.88 E-value=14 Score=32.53 Aligned_cols=19 Identities=42% Similarity=0.450 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHH-HHHHHHH
Q 037393 26 MEAQKILLLLLL-CLNLVSS 44 (503)
Q Consensus 26 ~~~~~~~~~~~~-~~~~~~~ 44 (503)
|.+..+|||.|| +++|+++
T Consensus 1 MaSK~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLIS 20 (95)
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 344443444333 3334444
No 108
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=45.31 E-value=73 Score=33.48 Aligned_cols=93 Identities=24% Similarity=0.318 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCceecccCCCCCC----CC----CCHHHHHHhHHHHHHHH-HHHh-c-CCceeeeeccCCCCC
Q 037393 146 MAKRRMRANFEFIDKLGVDFWCFHDRDIAP----DG----ETLKEANANLDEVVALA-KELQ-G-TKVRPLWGTAQLFSH 214 (503)
Q Consensus 146 ~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P----~g----~t~~e~~~nl~~i~~~l-k~l~-~-tGvkl~~~tanlF~~ 214 (503)
....++-+.|+-+.++||..+++--+|+-. .+ .+..+.. ..++..+ +++. . .+++-+...
T Consensus 88 ~d~~~L~~K~~ql~~lGvr~FailfDDi~~~~~~~~~~~~~~~~~~q---~~l~n~v~~~l~~~~~~~~~l~~c------ 158 (306)
T PF07555_consen 88 EDFEALKAKFDQLYDLGVRSFAILFDDIDGDLWHCDKDDFNSLAQAQ---ARLLNRVNKELIKKKGDVKPLIFC------ 158 (306)
T ss_dssp HHHHHHHHHHHHHHCTT--EEEEE-TS-SSC--TTTTTT-SCHHHHH---HHHHHHHHHHTTTCSSSS--EEEE------
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeecCCCCccccccccccchHHHHH---HHHHHHHHHHHhccCCCCCCceEE------
Confidence 344466677789999999999885555432 11 2222221 1222233 4443 2 234433333
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCc
Q 037393 215 PRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGRE 259 (503)
Q Consensus 215 prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrE 259 (503)
|.+-.+..++| .-=-++++.|.-+..+||.|..
T Consensus 159 Pt~Y~~~~~~~------------~Yl~~l~~~L~~~i~i~WTG~~ 191 (306)
T PF07555_consen 159 PTEYCGDWASP------------EYLRTLGEQLDPDIQIFWTGPK 191 (306)
T ss_dssp -SS-SCHHHCC------------HHHHHHHHHS-TTSEEEE-CSS
T ss_pred ChhhcCCCCCh------------HHHHHHHhhCCCCCEEEEcCCc
Confidence 44444555555 1122567788899999999954
No 109
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=45.31 E-value=1.9e+02 Score=29.69 Aligned_cols=133 Identities=14% Similarity=0.218 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCC
Q 037393 141 TNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHG 220 (503)
Q Consensus 141 ~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~G 220 (503)
.||++.|. ...+.|+++++.|=+. +++-=+-+. |..+++...+-+-+++.
T Consensus 24 Pd~v~aA~--------~a~~aGAdgITvHlRe--------DrRHI~d~D-v~~L~~~~~~~lNlE~a------------- 73 (239)
T PRK05265 24 PDPVRAAL--------IAEQAGADGITVHLRE--------DRRHIRDRD-VRLLRETLKTELNLEMA------------- 73 (239)
T ss_pred CCHHHHHH--------HHHHcCCCEEEecCCC--------CcccCCHHH-HHHHHHhcCCCEEeccC-------------
Confidence 48999886 5677799999998553 101001111 12344443333333332
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC-CcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 221 AATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG-REGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 221 A~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG-rEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
|.+ +-++++.++--+.+++=|- |+.--+...-|..+..+.+.+.++.+. +.|....++|+
T Consensus 74 ----~~~-----------em~~ia~~~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~----~~gIrVSLFid 134 (239)
T PRK05265 74 ----ATE-----------EMLDIALEVKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLK----DAGIRVSLFID 134 (239)
T ss_pred ----CCH-----------HHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHH----HCCCEEEEEeC
Confidence 222 4689999999999999987 565555666677766666666666654 47777788998
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHhCCCCCceeeccccc
Q 037393 300 PKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNH 338 (503)
Q Consensus 300 PKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gH 338 (503)
|.|.. +...+++|.+ -|-+-+||
T Consensus 135 P~~~q-------------i~~A~~~GAd---~VELhTG~ 157 (239)
T PRK05265 135 PDPEQ-------------IEAAAEVGAD---RIELHTGP 157 (239)
T ss_pred CCHHH-------------HHHHHHhCcC---EEEEechh
Confidence 87754 6677889976 56667776
No 110
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=44.92 E-value=9.4 Score=35.78 Aligned_cols=23 Identities=26% Similarity=0.570 Sum_probs=15.6
Q ss_pred HHHHhCCceecccCCCCCCCCCC
Q 037393 157 FIDKLGVDFWCFHDRDIAPDGET 179 (503)
Q Consensus 157 ~l~kLG~~~~~fHD~Dl~P~g~t 179 (503)
.+++.+++.+.|||.|+.|+.+.
T Consensus 106 A~~~~~~dc~ifHDVDllP~~~~ 128 (136)
T PF13733_consen 106 ALKDDDFDCFIFHDVDLLPENDR 128 (136)
T ss_dssp HHHHS--SEEEEE-TTEEESBTT
T ss_pred HhhccCCCEEEEecccccccCCC
Confidence 44455899999999999998753
No 111
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=44.00 E-value=2e+02 Score=29.42 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCC
Q 037393 141 TNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHG 220 (503)
Q Consensus 141 ~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~G 220 (503)
.||++.|. ...+.|+++++.|=+. +++ ..-++=|..+++...+-+-+++.
T Consensus 21 Pdpv~aA~--------~a~~aGAdgITvHlRe--------DrR-HI~d~Dv~~L~~~~~~~lNlE~a------------- 70 (234)
T cd00003 21 PDPVEAAL--------LAEKAGADGITVHLRE--------DRR-HIQDRDVRLLRELVRTELNLEMA------------- 70 (234)
T ss_pred CCHHHHHH--------HHHHcCCCEEEecCCC--------CcC-cCCHHHHHHHHHHcCCCEEeccC-------------
Confidence 58999986 5667799999998553 000 01111122344443444444443
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC-CcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 221 AATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG-REGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 221 A~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG-rEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
| ..+-++++.++.-+.+++=|- |+.--+...-|..+..+.+.+.++.+. +.|....++|+
T Consensus 71 ----~-----------t~em~~ia~~~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~----~~gI~VSLFiD 131 (234)
T cd00003 71 ----P-----------TEEMLEIALEVKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLK----DAGIRVSLFID 131 (234)
T ss_pred ----C-----------CHHHHHHHHHCCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHH----HCCCEEEEEeC
Confidence 1 236789999999999999987 555555556677666666666655554 47877788999
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHhCCCCCceeeccccc
Q 037393 300 PKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNH 338 (503)
Q Consensus 300 PKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gH 338 (503)
|.|.. +...+++|.+ -|-+-+|+
T Consensus 132 Pd~~q-------------i~~A~~~GAd---~VELhTG~ 154 (234)
T cd00003 132 PDPEQ-------------IEAAKEVGAD---RVELHTGP 154 (234)
T ss_pred CCHHH-------------HHHHHHhCcC---EEEEechh
Confidence 98754 5667888876 45566665
No 112
>KOG4518 consensus Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]
Probab=43.99 E-value=3.7e+02 Score=27.44 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCC
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAA 222 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~ 222 (503)
-..-+..+|.|+++-+.||...+-+- .-++|.|.++++..+-.-+=++...+.. ++.+..+--.-|-.+.|-|-.
T Consensus 81 ~k~FR~~Ld~ai~yAkalgC~rIHlm-AG~~k~g~d~~~~~~ty~eNlr~AA~~l~~~kligliEPINkyt~PgY~l--- 156 (264)
T KOG4518|consen 81 KKEFRKSLDTAIEYAKALGCCRIHLM-AGIPKSGDDLENAHQTYSENLRFAAEKLKEHKLIGLIEPINKYTIPGYHL--- 156 (264)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEe-ccCCCCCchHHHHHHHHHHHHHHHHHHhhhhceeeeecchhcccCcchhc---
Confidence 44456689999999999998877432 2346778887665544433333334444 555665555556666665532
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 037393 223 TSSEVAVYAYAAAQVKKAMEVTHYLGGENYVF 254 (503)
Q Consensus 223 TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~ 254 (503)
|+ -.+|++|-+..+++|+-+
T Consensus 157 -n~-----------y~~Aa~Ilq~v~~~Nlql 176 (264)
T KOG4518|consen 157 -NN-----------YEDAADILQMVQSNNLQL 176 (264)
T ss_pred -CC-----------HHHHHHHHHHhcCCceeh
Confidence 22 224555666666666543
No 113
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=43.96 E-value=2.6e+02 Score=31.91 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=71.7
Q ss_pred HHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC--CcCcCCCC-CCCH
Q 037393 193 LAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG--REGYQSLL-NTDM 269 (503)
Q Consensus 193 ~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--rEGydy~~-qtD~ 269 (503)
.-++..+.|-. .+++|.|+-.+.+.....- -..+.+..++|+++|++.-.+..-+.+. -=|.--+. ..+.
T Consensus 48 vH~~yl~AGAd--vi~TnTy~as~~~l~~~g~-----~~~~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~ 120 (612)
T PRK08645 48 IHREYIEAGAD--VIQTNTFGANRIKLKRYGL-----EDKVKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISL 120 (612)
T ss_pred HHHHHHHhCCC--EEecCcccccHHHHHhcCc-----hHHHHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCH
Confidence 44455577766 4557777643333222111 1346777777888777765432222222 11110111 1244
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEeccCC--CCCCCCCccccHHHHHHHHHHhC-CCCCceeecccccccccCCCH
Q 037393 270 GREIDHMANFFESAAAYKKKIGFKGNLLIEPKP--QEPTKHQYDWDAATAANFLRKYG-LINDFKLNIECNHATLSGHSC 346 (503)
Q Consensus 270 ~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP--~EP~~h~y~~dvgt~l~fl~~~g-l~~~~gVniD~gHa~lAG~n~ 346 (503)
.+..+...+-++.+. +-|.| -|++|==| .| +-.++..+++.+ +|--+.++++-+..+.-|+++
T Consensus 121 ~~~~~~~~~~~~~l~----~~gvD-~l~~ET~~~~~E---------a~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~ 186 (612)
T PRK08645 121 EEIRREFREQIDALL----EEGVD-GLLLETFYDLEE---------LLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSL 186 (612)
T ss_pred HHHHHHHHHHHHHHH----hcCCC-EEEEEccCCHHH---------HHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCH
Confidence 444444444444433 34444 45566322 22 333444445554 454455555544445666666
Q ss_pred HHHHHHHHHcCCeeEEecCC
Q 037393 347 HHDIETARLNGLLGNIDANT 366 (503)
Q Consensus 347 ah~va~A~~~gkLg~ihlNd 366 (503)
+..+..+...+ ...|=+|=
T Consensus 187 ~~~~~~~~~~~-~~avGiNC 205 (612)
T PRK08645 187 EEALKELVAAG-ADVVGLNC 205 (612)
T ss_pred HHHHHHHHhCC-CCEEEecC
Confidence 66655554444 34444444
No 114
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=43.68 E-value=2.7e+02 Score=29.66 Aligned_cols=139 Identities=18% Similarity=0.134 Sum_probs=89.3
Q ss_pred HHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc-----------CCCCCC
Q 037393 156 EFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM-----------HGAATS 224 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk-----------~GA~Tn 224 (503)
+.+.++|++-|=+=--. + ..++.+.+|+..++++ |+.=++.|+|=+.=+++. +=++=+
T Consensus 53 ~~~~~~Gv~kvRlTGGE-------P-llR~dl~eIi~~l~~~---~~~~islTTNG~~L~~~a~~Lk~AGl~rVNVSLDs 121 (322)
T COG2896 53 RAFAELGVEKVRLTGGE-------P-LLRKDLDEIIARLARL---GIRDLSLTTNGVLLARRAADLKEAGLDRVNVSLDS 121 (322)
T ss_pred HHHHHcCcceEEEeCCC-------c-hhhcCHHHHHHHHhhc---ccceEEEecchhhHHHHHHHHHHcCCcEEEeeccc
Confidence 45666999888542211 1 1245666666555544 777778888876555442 346778
Q ss_pred CCHHHHHHHH-----HHHHHHHHHHHHhCCC----eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 037393 225 SEVAVYAYAA-----AQVKKAMEVTHYLGGE----NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGN 295 (503)
Q Consensus 225 PD~~VRa~Ai-----~~vkraiDia~eLGa~----~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~ 295 (503)
-||+.+++.- ++|+++||.|.+.|-. |.|+=.|. |-. =+-..++++++.|..++
T Consensus 122 ld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgv---------Nd~--------ei~~l~e~~~~~~~~lr 184 (322)
T COG2896 122 LDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGV---------NDD--------EIEDLLEFAKERGAQLR 184 (322)
T ss_pred CCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCC---------CHH--------HHHHHHHHHhhcCCceE
Confidence 8999998887 9999999999999998 66776662 222 23455677777887544
Q ss_pred EEeccCCCCCCC---CCccccHHHHHHHHHH
Q 037393 296 LLIEPKPQEPTK---HQYDWDAATAANFLRK 323 (503)
Q Consensus 296 ~~IEPKP~EP~~---h~y~~dvgt~l~fl~~ 323 (503)
+||+-|.-... ..+.-+.......+.+
T Consensus 185 -fIE~m~~g~~~~~~~~~~~~~~~i~~~l~~ 214 (322)
T COG2896 185 -FIELMPLGEGNSWRLDKYLSLDEILRKLEE 214 (322)
T ss_pred -EEEEeecCcccchhhhccccHHHHHHHHHh
Confidence 58888866522 1233445555555544
No 115
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=43.62 E-value=57 Score=34.57 Aligned_cols=103 Identities=13% Similarity=0.133 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhc---CCceeeeeccCCCCCccccCCCCCCCCHH
Q 037393 152 RANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQG---TKVRPLWGTAQLFSHPRYMHGAATSSEVA 228 (503)
Q Consensus 152 ~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~---tGvkl~~~tanlF~~prfk~GA~TnPD~~ 228 (503)
+.-+++++..|++||-++---.. . ..+..+++...+.++++.+. .+..|.|-.+-.-....-=.+++++-+..
T Consensus 93 ~kLv~lak~yGfDGw~iN~E~~~-~---~~~~~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ 168 (339)
T cd06547 93 DKLVEVAKYYGFDGWLINIETEL-G---DAEKAKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKP 168 (339)
T ss_pred HHHHHHHHHhCCCceEeeeeccC-C---cHHHHHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHH
Confidence 44567788889999966433211 0 23445666766666666653 38999998765443322223456666555
Q ss_pred HHHHHH-----------HHHHHHHHHHHHhCCCeEEEccCCc
Q 037393 229 VYAYAA-----------AQVKKAMEVTHYLGGENYVFWGGRE 259 (503)
Q Consensus 229 VRa~Ai-----------~~vkraiDia~eLGa~~~v~WgGrE 259 (503)
-+ .+. ..+.++++.|+.+|-..+-++.|.|
T Consensus 169 ff-~~~D~~FlNY~W~~~~l~~s~~~a~~~g~~~~dvy~GiD 209 (339)
T cd06547 169 FF-DVCDGIFLNYWWTEESLERSVQLAEGLGRSPYDVYVGVD 209 (339)
T ss_pred HH-hhhcceeEecCCCcchHHHHHHHHHHcCCCHhHEEEEEE
Confidence 55 222 3667788888888888777777744
No 116
>PLN02681 proline dehydrogenase
Probab=43.57 E-value=5e+02 Score=28.85 Aligned_cols=167 Identities=11% Similarity=0.039 Sum_probs=104.0
Q ss_pred CCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eEE
Q 037393 176 DGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGE--NYV 253 (503)
Q Consensus 176 ~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~--~~v 253 (503)
-|.|.+|....++ +|.+.|+.. +-++.. .... +++.....++..+++||.+...+.. .++
T Consensus 90 aGEt~~e~~~~i~-------~L~~~G~~~---iLdy~~-------E~~~-~e~~~d~~~~~~l~~Id~~~~~~~~~~~vs 151 (455)
T PLN02681 90 AGEDAEEAARTVR-------RLWELGLGG---ILDYAA-------EDAG-DNAACDRNLEKFLAAIRAAATLPPSSSSAA 151 (455)
T ss_pred cCCCHHHHHHHHH-------HHHHCCCeE---Eeeccc-------cCcC-CHHHHHHHHHHHHHHHHHHhhcCCCCCceE
Confidence 5777777665554 455667774 233222 2222 5666777888899999999987542 222
Q ss_pred E-ccCCcCcC--------------------------------------------CCCCCCHHHHHHHHHHHHHHHHHHHH
Q 037393 254 F-WGGREGYQ--------------------------------------------SLLNTDMGREIDHMANFFESAAAYKK 288 (503)
Q Consensus 254 ~-WgGrEGyd--------------------------------------------y~~qtD~~~~~d~l~e~l~~v~dya~ 288 (503)
+ |.| =|-. -++...-.+.|+.+.+-++.+|++|.
T Consensus 152 iK~Ta-lg~~~ll~~~s~~~~~~~~~~~~~l~~~~~~~~l~~~~s~~~~~~~~~~~l~~~e~~~~~~~~~rl~~i~~~A~ 230 (455)
T PLN02681 152 VKITA-LCPPSLLERVSDLLRWQDRDPNGKLPWKQWSFPLFADSSPLYHATSEPEPLTAEEERLLELAHERLQKLCERAA 230 (455)
T ss_pred Eeecc-CCcHHHHHhhhhhhhhccccccccccccccccccccccchhhhhccccccCchhhhhHHHHHHHHHHHHHHHHH
Confidence 2 333 2210 23444556688999999999999999
Q ss_pred hcCCCceEEeccCCCCCCCCCccccHHH-HHHHHHHhCC---CCCceeecccccccccCCCHHHHHHHHHHcCCeeEEec
Q 037393 289 KIGFKGNLLIEPKPQEPTKHQYDWDAAT-AANFLRKYGL---INDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDA 364 (503)
Q Consensus 289 ~iG~~~~~~IEPKP~EP~~h~y~~dvgt-~l~fl~~~gl---~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihl 364 (503)
+.|..+.|--|.--..| .+-. ++.+.++++- ...++.|+-.= ..=+-.+....++.|...|.-++|-+
T Consensus 231 ~~gv~l~IDAE~s~~q~-------aid~l~~~l~~~yN~~~~~~~V~~T~QaY-Lk~t~~~l~~~l~~a~~~g~~~gvKL 302 (455)
T PLN02681 231 QLGVPLLIDAEYTSLQP-------AIDYITYDLAREFNKGKDRPIVYGTYQAY-LKDARERLRLDLERSEREGVPLGAKL 302 (455)
T ss_pred HCCCEEEEeCCcccchh-------HHHHHHHHHHHHhccccCCCcEEEEEeCc-cccCHHHHHHHHHHHHhcCCCcceEE
Confidence 99875555445433332 3333 5556677743 13477777531 11222345567888888998889999
Q ss_pred CCCCC
Q 037393 365 NTGDP 369 (503)
Q Consensus 365 Ndg~~ 369 (503)
=.|=|
T Consensus 303 VRGAY 307 (455)
T PLN02681 303 VRGAY 307 (455)
T ss_pred EecCC
Confidence 88876
No 117
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=43.36 E-value=2.2e+02 Score=29.23 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=84.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCC
Q 037393 141 TNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHG 220 (503)
Q Consensus 141 ~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~G 220 (503)
.||++.|. ...+.|+++++.|=+. +++-=+-+. |..+++...+-+-+++.
T Consensus 21 Pd~v~aA~--------~a~~aGAdgITvHlRe--------DrRHI~d~D-v~~l~~~~~~~lNlE~a------------- 70 (237)
T TIGR00559 21 PDPLRAAL--------IAEQAGADGITVHLRE--------DRRHIQDRD-VYDLKEALTTPFNIEMA------------- 70 (237)
T ss_pred CCHHHHHH--------HHHHcCCCEEEecCCC--------CcCcCCHHH-HHHHHHHcCCCEEeccC-------------
Confidence 58999886 5667799999998554 100000111 11334443443333332
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC-CcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 221 AATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG-REGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 221 A~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG-rEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
|.+ +-++++.++.-+.+++=|- |+.--+...-|..+..+.+.+.++.+ ++.|....++|+
T Consensus 71 ----~~~-----------emi~ia~~vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l----~~~gI~VSLFiD 131 (237)
T TIGR00559 71 ----PTE-----------EMIRIAEEIKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRF----HAAGIEVSLFID 131 (237)
T ss_pred ----CCH-----------HHHHHHHHcCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHH----HHCCCEEEEEeC
Confidence 222 6689999999999999987 55555555566666665555555555 557887788898
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHhCCCCCceeeccccc
Q 037393 300 PKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNH 338 (503)
Q Consensus 300 PKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gH 338 (503)
|.|.. +...+++|.+ -|-+-+|+
T Consensus 132 P~~~q-------------i~~A~~~GAd---~VELhTG~ 154 (237)
T TIGR00559 132 ADKDQ-------------ISAAAEVGAD---RIEIHTGP 154 (237)
T ss_pred CCHHH-------------HHHHHHhCcC---EEEEechh
Confidence 88654 6777888876 46666666
No 118
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=42.97 E-value=1.4e+02 Score=29.02 Aligned_cols=66 Identities=14% Similarity=0.234 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCC
Q 037393 235 AQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKP 302 (503)
Q Consensus 235 ~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP 302 (503)
..++++++.++..|.+.+.++.... +...+..+.+-.+...+.+..+++++++.|++..|.+|.-+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~ 132 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVS--DLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDAS 132 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETS--HHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTG
T ss_pred HHHHHHHHhhHhccCCEEEecCccc--HHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccc
Confidence 3466667777889999999887632 11112223344456667777778888888887777776543
No 119
>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional
Probab=42.42 E-value=38 Score=34.64 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=43.4
Q ss_pred hhHHHHhhccCCChhhhhhHhcCCCCHHHHHHHHHHh---------------CCCCCCCchhHHHHHHhhh
Q 037393 446 LPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEW---------------GEPKVPSAKQELAEMIFQS 501 (503)
Q Consensus 446 l~~~~~~Ry~~~~~~~g~~~~~g~~~~~~l~~~a~~~---------------~~~~~~sg~qe~~e~~~n~ 501 (503)
|++.+ +||.. ...+-+.+.+||+|.+.|..||.+. ..-.-.+.|++++++|+..
T Consensus 18 L~~~~-~~yh~-~HPF~~~~~~Gklt~~qlq~wa~nrYyyq~~~P~kdaaI~S~c~D~e~Rr~w~~ri~d~ 86 (246)
T PRK05157 18 LRAIG-ARYHI-HHPFHRLLHEGKLTREQIQAWVANRFYYQINIPLKDAAILSNCPDRETRREWRQRILDH 86 (246)
T ss_pred HHHHH-Hhhcc-cChHHHHHHcCCCCHHHHHHHHHHhchhhccchHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 67777 79987 9999999999999999999998871 1112356799999999864
No 120
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=41.14 E-value=2.7e+02 Score=31.72 Aligned_cols=157 Identities=21% Similarity=0.240 Sum_probs=94.6
Q ss_pred HHHHHHHHhCCceecc--cCCCCCCCCC-CHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc---CCCCCCCC
Q 037393 153 ANFEFIDKLGVDFWCF--HDRDIAPDGE-TLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM---HGAATSSE 226 (503)
Q Consensus 153 ~afe~l~kLG~~~~~f--HD~Dl~P~g~-t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk---~GA~TnPD 226 (503)
+=+++|++||++.+-| --.-|.|.|. +-..+++-++=.-+++++|.++||+. .+|---+..|..- .|++-||.
T Consensus 95 eDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P-~VTLfHwDlPq~LeDeYgGwLn~~ 173 (524)
T KOG0626|consen 95 EDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEP-FVTLFHWDLPQALEDEYGGWLNPE 173 (524)
T ss_pred HHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeE-EEEEecCCCCHHHHHHhccccCHH
Confidence 3356999999999988 7788999998 43445666776667889999999985 6677777777553 48888874
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEccC--------CcCcCCC------------------CCCCHHHHHHHHHHHH
Q 037393 227 VAVYAYAAAQVKKAMEVTHYLGGENYVFWGG--------REGYQSL------------------LNTDMGREIDHMANFF 280 (503)
Q Consensus 227 ~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG--------rEGydy~------------------~qtD~~~~~d~l~e~l 280 (503)
-++.-++=.|+|=+-=|+.|.+|-- .-||+.- -.+..--.-.+|.-+=
T Consensus 174 ------ivedF~~yA~~CF~~fGDrVK~WiT~NEP~v~s~~gY~~G~~aPGrCs~~~~~c~~g~s~~epYiv~HNllLAH 247 (524)
T KOG0626|consen 174 ------IVEDFRDYADLCFQEFGDRVKHWITFNEPNVFSIGGYDTGTKAPGRCSKYVGNCSAGNSGTEPYIVAHNLLLAH 247 (524)
T ss_pred ------HHHHHHHHHHHHHHHhcccceeeEEecccceeeeehhccCCCCCCCCCcccccCCCCCCCCCcchHHHHHHHHH
Confidence 1222222235664433477888843 2233311 1123333444444444
Q ss_pred HHHHHH-----HHhcCCCceEEeccCCCCCCCCCccccHHHH
Q 037393 281 ESAAAY-----KKKIGFKGNLLIEPKPQEPTKHQYDWDAATA 317 (503)
Q Consensus 281 ~~v~dy-----a~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~ 317 (503)
+.+++. .+.+|-.+-|++-+-=.||.... ..|...+
T Consensus 248 A~Av~~yr~kyk~~Q~G~IGi~~~~~w~eP~~~s-~~D~~Aa 288 (524)
T KOG0626|consen 248 AAAVDLYRKKYKKKQGGKIGIALSARWFEPYDDS-KEDKEAA 288 (524)
T ss_pred HHHHHHHHHhhhhhcCCeEeEEEeeeeeccCCCC-hHHHHHH
Confidence 444432 22355545566667768887765 4444433
No 121
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=40.18 E-value=1e+02 Score=26.91 Aligned_cols=93 Identities=16% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHH--HHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHH
Q 037393 194 AKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVY--AYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGR 271 (503)
Q Consensus 194 lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VR--a~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~ 271 (503)
+..+.+.|..+..++. ..|....++.... +.+..+-++..+.++.||.+++.+|.-.||.... .
T Consensus 18 i~~~~~~g~~v~vv~~--------t~G~~~~~~~~~~~~~~~~~R~~E~~~a~~~lGv~~~~~l~~~D~~~~~------~ 83 (128)
T PF02585_consen 18 IAKLAEAGHRVVVVTL--------TDGEAGHPDPTPWARELGEIRRAEARAAAEILGVENVIFLDFPDGQLPG------W 83 (128)
T ss_dssp HHHHHHTT-EEEEEEC--------E--TTTSSSSHHHHHSCHHHHHHHHHHHHHHCT-EEEEEEEECTTSCTC------H
T ss_pred HHHHHhcCCeEEEEEe--------cccccCCcccchhhHhHHHHHHHHHHHHHHHcCCceEEEeecCCCCccc------c
Confidence 3444455666655531 2255555544332 3344466788889999999999999987875433 3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCC
Q 037393 272 EIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEP 305 (503)
Q Consensus 272 ~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP 305 (503)
.++.+.+.|..++. +..+ .+.+=|-|..+
T Consensus 84 ~~~~~~~~l~~~i~---~~~p--~~V~t~~~~~~ 112 (128)
T PF02585_consen 84 SWEELVRDLEDLIR---EFRP--DVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHH---HH-E--SEEEEE-STTS
T ss_pred cHHHHHHHHHHHHH---HcCC--CEEEECCCCCC
Confidence 34444444444443 2322 55666777665
No 122
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.04 E-value=4.3e+02 Score=27.10 Aligned_cols=157 Identities=18% Similarity=0.117 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHH----HhcCCceeeeeccCCCCCccccCCCCC
Q 037393 148 KRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKE----LQGTKVRPLWGTAQLFSHPRYMHGAAT 223 (503)
Q Consensus 148 ~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~----l~~tGvkl~~~tanlF~~prfk~GA~T 223 (503)
-.++...++.+.++||+++++--.=.-.+.-+.+|.+..++-+.+.+++ +.+.|+++..+ |.+.
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~iri~vi------------Gd~~ 111 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLFIRRDLAELHRNGVRVRVI------------GERA 111 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE------------cChh
Confidence 3478888899999999999985444445677778877665554444443 33789999888 5555
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCC
Q 037393 224 SSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQ 303 (503)
Q Consensus 224 nPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~ 303 (503)
.-.++++ ..++++.+.++.-..=.+.+=.+..| .+.++++++.+++-..+- ++. |.
T Consensus 112 ~Lp~~l~----~~i~~~e~~T~~~~~~~lnla~~Ygg------------r~EI~~A~k~~~~~~~~g----~~~----~~ 167 (249)
T PRK14834 112 GLEADIC----ALLNEAEELTRNNTGLNLVIAFNYGS------------RDEIARAVRRLAREVAEG----RLD----PA 167 (249)
T ss_pred hCCHHHH----HHHHHHHHhhccCCceEEEEEeccCC------------HHHHHHHHHHHHHHHHcC----CCC----hh
Confidence 5445554 44566777777666556667766555 234456666665543322 222 11
Q ss_pred CCCCCCccccHHHHHHHHHHhCCCCCceeeccc-ccccccCCCHHH
Q 037393 304 EPTKHQYDWDAATAANFLRKYGLINDFKLNIEC-NHATLSGHSCHH 348 (503)
Q Consensus 304 EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~-gHa~lAG~n~ah 348 (503)
+= +....-..+..-+.|+ .-|.|=+ |...|.|=-|-|
T Consensus 168 dI-------~e~~i~~~L~~~~~pd-pDLLIRTsGe~RLSnFLlWQ 205 (249)
T PRK14834 168 SI-------DAETISANLDTADIPD-PDLIIRTSGEQRLSNFLLWQ 205 (249)
T ss_pred hC-------CHHHHHHHhccCCCCC-CCEEEEcCCcccccCChHHh
Confidence 10 1111111111223443 6677766 777777777766
No 123
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=39.89 E-value=1.6e+02 Score=29.52 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 275 HMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 275 ~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
...+.+..+++++++.|+.+.|..|.
T Consensus 111 ~~~~~~~~~i~~a~~~G~~v~~~~~~ 136 (268)
T cd07940 111 EVLERAVEAVEYAKSHGLDVEFSAED 136 (268)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEeeec
Confidence 33455556666777777766665544
No 124
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=39.11 E-value=1.1e+02 Score=30.59 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=54.5
Q ss_pred HHHHHhCCceecccCCCCC-----CCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHH
Q 037393 156 EFIDKLGVDFWCFHDRDIA-----PDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVY 230 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~-----P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VR 230 (503)
+.|.+.|+.-+-++-+.+- --|-|-+++.+|+.++.+..|.+.+.|+.++. ||.||-.+.|
T Consensus 45 ~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviv--------------a~ISP~r~~R 110 (197)
T COG0529 45 EKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIV--------------AFISPYREDR 110 (197)
T ss_pred HHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEE--------------EeeCccHHHH
Confidence 5688999887766333221 25678899999999999888877799998776 4889999999
Q ss_pred HHHHHHHHH
Q 037393 231 AYAAAQVKK 239 (503)
Q Consensus 231 a~Ai~~vkr 239 (503)
++|-+.+.+
T Consensus 111 ~~aR~~~~~ 119 (197)
T COG0529 111 QMARELLGE 119 (197)
T ss_pred HHHHHHhCc
Confidence 998877654
No 125
>PRK00035 hemH ferrochelatase; Reviewed
Probab=38.77 E-value=39 Score=35.04 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=56.1
Q ss_pred cceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHH
Q 037393 110 MRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDE 189 (503)
Q Consensus 110 lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~ 189 (503)
+.+...-| .+++... ||++ ||..+ .++++++.+.+.|++.+ .++|.+-.- +--+.+.+
T Consensus 225 l~~~~~~~-~~~fqs~--~g~~----~Wl~P---------~~~~~l~~l~~~g~k~V-----~v~P~~Fv~-D~lEtl~e 282 (333)
T PRK00035 225 LGLPDEDY-DLTYQSR--FGPE----PWLEP---------YTDDTLEELAEKGVKKV-----VVVPPGFVS-DHLETLEE 282 (333)
T ss_pred hCCCCCCe-EEEeeCC--CCCC----ccCCC---------CHHHHHHHHHHcCCCeE-----EEECCeeec-cchhHHHH
Confidence 33333456 3455554 6754 88665 23455668889999888 446765333 22223333
Q ss_pred HHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHH
Q 037393 190 VVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKA 240 (503)
Q Consensus 190 i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkra 240 (503)
|....++.. +.|.+..-. -..-|.+|.+.+.=++++++.
T Consensus 283 i~~e~~~~~~~~G~~~~~~------------~~~ln~~~~~i~~l~~~v~~~ 322 (333)
T PRK00035 283 IDIEYREIAEEAGGEEFRR------------IPCLNDSPEFIEALADLVREN 322 (333)
T ss_pred HHHHHHHHHHHcCCceEEE------------CCCCCCCHHHHHHHHHHHHHH
Confidence 333456665 788743332 344677888877777777764
No 126
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=38.23 E-value=4.6e+02 Score=27.48 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCC----
Q 037393 233 AAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKH---- 308 (503)
Q Consensus 233 Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h---- 308 (503)
+.+.+.++++..++.|....+-..=-.|++ .+... .+++ .+.+.|+ -.||-||..|...
T Consensus 206 ~~~~vl~~L~~l~~~~~~~~ir~tlv~g~N----d~e~~---~~a~-------l~~~~~~---~~Iel~~y~~~G~~k~~ 268 (322)
T PRK13762 206 AWERILETLELLPSKKTRTVIRITLVKGYN----MHDPE---GFAK-------LIERANP---DFVEVKAYMHVGYSRNR 268 (322)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEEEEECCcC----ccHHH---HHHH-------HHHHcCC---CEEEEECCeECCCcccc
Confidence 567889999999999876543333223332 22221 2333 3333443 3567788766542
Q ss_pred ---CccccHHHHHHHHHHhC
Q 037393 309 ---QYDWDAATAANFLRKYG 325 (503)
Q Consensus 309 ---~y~~dvgt~l~fl~~~g 325 (503)
..+|+-.....|.+++.
T Consensus 269 l~~~~~p~~eev~~~~~~l~ 288 (322)
T PRK13762 269 LTRDNMPSHEEVREFAKELA 288 (322)
T ss_pred ccccCCcCHHHHHHHHHHHH
Confidence 23577788888876654
No 127
>PF05114 DUF692: Protein of unknown function (DUF692); InterPro: IPR007801 The proteins in this entry are functionally uncharacterised.; PDB: 3BWW_A.
Probab=37.68 E-value=2.6e+02 Score=28.96 Aligned_cols=123 Identities=12% Similarity=0.071 Sum_probs=56.0
Q ss_pred HHHHHHHHHhCCCeEE---EccCCcCcCCC-CCCCH-HHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC-CCcc
Q 037393 238 KKAMEVTHYLGGENYV---FWGGREGYQSL-LNTDM-GREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK-HQYD 311 (503)
Q Consensus 238 kraiDia~eLGa~~~v---~WgGrEGydy~-~qtD~-~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~-h~y~ 311 (503)
++--.++.+++..-|+ -|..-+|+-+. +-..+ +..++++++-++.+-+. .| .+++||-=+.=... +.-+
T Consensus 77 ~~l~~l~~~~~~~~vSeHL~~~~~~g~~~dLlP~p~t~e~l~~~~~~i~~vQ~~---l~--~plllEN~s~y~~~~~~~m 151 (274)
T PF05114_consen 77 RRLKALADRLNPPWVSEHLCWSSVGGHLYDLLPLPYTEEALDHVVDRIRRVQDA---LG--RPLLLENPSSYLPFPGSEM 151 (274)
T ss_dssp HHHHHHHHHTT----EE-S--------------B---HHHHHHHHHHHHHHHHH---HT--S--EEE----S-B-TT-SS
T ss_pred HHHHHHHHHHCCCEEEeEEEEecCCCccCCcCCCCCCHHHHHHHHHHHHHHHHH---hC--CCeEEeCchhhcCCCcCCC
Confidence 3333455566655443 34455775442 23333 34568888888888887 43 39999976654332 2444
Q ss_pred ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHH---cCCeeEEecCCCCC
Q 037393 312 WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARL---NGLLGNIDANTGDP 369 (503)
Q Consensus 312 ~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~---~gkLg~ihlNdg~~ 369 (503)
+.+.-.-..+++.| .|+.+|++|....-.|.-....--++ ..+...||+..+..
T Consensus 152 ~E~eFl~~l~~rtg----cglLLDinNlyvna~N~g~dp~~~l~~lP~~rV~eiHlAG~~~ 208 (274)
T PF05114_consen 152 SEPEFLRELVERTG----CGLLLDINNLYVNAVNHGFDPYEYLDALPLERVVEIHLAGHSE 208 (274)
T ss_dssp -HHHHHHHHHHHHT-----EEEEEHHHHHHHHHHH---HHHHHHHS-GGGEEEEEE-----
T ss_pred CHHHHHHHHHHHhC----CCEEEEhhhhhhhhhcCCCCHHHHHHhCCHHHhEEEEccCCCC
Confidence 45544444556666 89999999988876665444333333 37899999998754
No 128
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=37.64 E-value=1.3e+02 Score=33.63 Aligned_cols=176 Identities=15% Similarity=0.153 Sum_probs=106.6
Q ss_pred CCcccccCCCCCCCcc-ccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 037393 76 IPKIKYEGPSSKNHLA-FKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRA 153 (503)
Q Consensus 76 i~~i~yeg~~s~n~~~-f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~ 153 (503)
|+.-.++|-.+.+.-- |+.|..|=..+ |.|. .=+|||+++ +|..|..+...|.+.+-+==+.
T Consensus 41 ~~~~~~~~~~~~~a~d~YhrYkeDi~L~-~emG~~~~R~SI~W---------------sRIfP~g~~~e~N~~gl~fY~~ 104 (460)
T COG2723 41 IPGRLVSGDPPEEASDFYHRYKEDIALA-KEMGLNAFRTSIEW---------------SRIFPNGDGGEVNEKGLRFYDR 104 (460)
T ss_pred cCCcccCCCCCccccchhhhhHHHHHHH-HHcCCCEEEeeeeE---------------EEeecCCCCCCcCHHHHHHHHH
Confidence 6666677755544443 67776664432 2222 237999986 3555665554566666666778
Q ss_pred HHHHHHHhCC-ceecccCCCCCCCC-----CCHHHHHHhHHHHHHHHHHHh-cCC-ceeeeec---cCCCCCccccCCCC
Q 037393 154 NFEFIDKLGV-DFWCFHDRDIAPDG-----ETLKEANANLDEVVALAKELQ-GTK-VRPLWGT---AQLFSHPRYMHGAA 222 (503)
Q Consensus 154 afe~l~kLG~-~~~~fHD~Dl~P~g-----~t~~e~~~nl~~i~~~lk~l~-~tG-vkl~~~t---anlF~~prfk~GA~ 222 (503)
-|+.|.+.|+ +.|++||-| .|.. ..+. +++.++..+.+.+.+. ..| .+=.|.| +|.+.+--|..|.+
T Consensus 105 l~del~~~gIep~vTL~Hfd-~P~~L~~~ygGW~-nR~~i~~F~~ya~~vf~~f~dkVk~W~TFNE~n~~~~~~y~~~~~ 182 (460)
T COG2723 105 LFDELKARGIEPFVTLYHFD-LPLWLQKPYGGWE-NRETVDAFARYAATVFERFGDKVKYWFTFNEPNVVVELGYLYGGH 182 (460)
T ss_pred HHHHHHHcCCEEEEEecccC-CcHHHhhccCCcc-CHHHHHHHHHHHHHHHHHhcCcceEEEEecchhhhhccccccccc
Confidence 8899999998 788999999 4532 1333 4567777788888877 766 5556777 34445545665553
Q ss_pred C--CCCHHHHHHHHHHH----HHHHHHHHHhCCC-eEEEccCCcCcCCCCCCCHH
Q 037393 223 T--SSEVAVYAYAAAQV----KKAMEVTHYLGGE-NYVFWGGREGYQSLLNTDMG 270 (503)
Q Consensus 223 T--nPD~~VRa~Ai~~v----kraiDia~eLGa~-~~v~WgGrEGydy~~qtD~~ 270 (503)
- .-+++.--+|+-+. -+|+++.++++-+ -+-+=.. -+--||+..+.+
T Consensus 183 ~p~~~~~~~~~qa~hh~~lA~A~avk~~~~~~~~~kIG~~~~-~~p~YP~s~~p~ 236 (460)
T COG2723 183 PPGIVDPKAAYQVAHHMLLAHALAVKAIKKINPKGKVGIILN-LTPAYPLSDKPE 236 (460)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcCceEEEec-cCcCCCCCCCHH
Confidence 3 22333322333222 2567888888876 4444334 455678876663
No 129
>PLN02814 beta-glucosidase
Probab=37.42 E-value=30 Score=38.62 Aligned_cols=112 Identities=16% Similarity=0.239 Sum_probs=63.7
Q ss_pred cccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceecc
Q 037393 91 AFKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCF 168 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~f 168 (503)
.|++|..|-..+ |.|. ++.|||+++ --+-.+| .|. + .+.+-+.=+..|+.|.+-|+ |.||+
T Consensus 75 ~Yhry~EDI~L~-k~lG~~ayRfSIsW-sRI~P~G-----~g~----~------N~~Gl~fY~~lId~l~~~GI~P~VTL 137 (504)
T PLN02814 75 GYHKYKEDVKLM-AEMGLESFRFSISW-SRLIPNG-----RGL----I------NPKGLLFYKNLIKELRSHGIEPHVTL 137 (504)
T ss_pred HHHhhHHHHHHH-HHcCCCEEEEeccH-hhcCcCC-----CCC----C------CHHHHHHHHHHHHHHHHcCCceEEEe
Confidence 577776665544 4444 789999986 2322222 221 1 22222345567788999998 79999
Q ss_pred cCCCCCCCCCCHH----HHHHhHHHHHHHHHHHh-cCCcee-eeec---cCCCCCccccCC
Q 037393 169 HDRDIAPDGETLK----EANANLDEVVALAKELQ-GTKVRP-LWGT---AQLFSHPRYMHG 220 (503)
Q Consensus 169 HD~Dl~P~g~t~~----e~~~nl~~i~~~lk~l~-~tGvkl-~~~t---anlF~~prfk~G 220 (503)
||-|+ |..-.-+ .+.+.++..+++.+.+. ..|=+| .|+| ||.+...-|..|
T Consensus 138 ~H~dl-P~~L~~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk~WiT~NEP~~~~~~gy~~G 197 (504)
T PLN02814 138 YHYDL-PQSLEDEYGGWINRKIIEDFTAFADVCFREFGEDVKLWTTINEATIFAIGSYGQG 197 (504)
T ss_pred cCCCC-CHHHHHhcCCcCChhHHHHHHHHHHHHHHHhCCcCCEEEeccccchhhhcccccC
Confidence 99995 6321111 12345566666776666 544433 6887 444444345444
No 130
>KOG3911 consensus Nucleolar protein NOP52/RRP1 [RNA processing and modification]
Probab=37.40 E-value=5.5 Score=42.37 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=67.2
Q ss_pred cccccceeeeeccccC--CCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHhCCce------ec------c-c
Q 037393 106 MKDWMRFSVAFWHTFR--GTGSDPFGVPTKSWPWEDGTNS-MAMAKRRMRANFEFIDKLGVDF------WC------F-H 169 (503)
Q Consensus 106 m~~~lrFsv~~Wht~~--~~g~DpFG~~T~~rpw~~~~d~-~e~a~~r~~~afe~l~kLG~~~------~~------f-H 169 (503)
-+..++|.-|||-|+| |.|-|..- .|- .=..++=+.+.|++|+..|-+. +. . -
T Consensus 86 ~~a~i~F~~~FwktM~rEW~gIDr~R-----------lDKflmLiRrvlr~~l~~Lk~~~W~~~li~e~~~~~q~~~~~~ 154 (378)
T KOG3911|consen 86 TEAQILFVSAFWKTMCREWFGIDRLR-----------LDKFLMLIRRVLRASLRVLKERNWEKDLIDEYLKVLQEWVLSP 154 (378)
T ss_pred hHHHHHHHHHHHHHHhhhhcCcHHHH-----------HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHhhcCC
Confidence 3667899999999988 55555221 221 2234556778888888776210 00 0 1
Q ss_pred CCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHH
Q 037393 170 DRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAME 242 (503)
Q Consensus 170 D~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiD 242 (503)
+.--.|.|-..- +..| ++.++. ..|..+...+.++|.+| |+.++.+..|..+-+..++.+...+-
T Consensus 155 ~s~~np~Gi~fH-----f~dI--~ldEL~kv~~~e~~~~q~~~~~d~-~~~~~a~~~d~~~l~~~~~~v~e~l~ 220 (378)
T KOG3911|consen 155 DSQSNPNGIKFH-----FADI--LLDELDKVGGEELTADQNLLFIDP-FCRIIADTKDYKLLALIERIVFEILV 220 (378)
T ss_pred CCCCCCCccchh-----HHHH--HHHHHHHhcCCcchhhhhhcccCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112222221 1111 344555 56666777878888864 66777777777777766666666553
No 131
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=37.36 E-value=1.3e+02 Score=32.40 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=52.3
Q ss_pred HHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCC-CCCCCHHHHHHHHHHH
Q 037393 159 DKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGA-ATSSEVAVYAYAAAQV 237 (503)
Q Consensus 159 ~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA-~TnPD~~VRa~Ai~~v 237 (503)
-.||.++|.+|= ..|.+.+ .+.+.++.+...+..+.|+-++.. .|-.|. +++++ -...+.+.+
T Consensus 156 lrLGAdAV~~tv----y~Gs~~E--~~ml~~l~~i~~ea~~~GlPlv~~--------~YpRG~~i~~~~--d~~~~~d~I 219 (348)
T PRK09250 156 LRLGAVAVGATI----YFGSEES--RRQIEEISEAFEEAHELGLATVLW--------SYLRNSAFKKDG--DYHTAADLT 219 (348)
T ss_pred HHCCCCEEEEEE----ecCCHHH--HHHHHHHHHHHHHHHHhCCCEEEE--------ecccCcccCCcc--cccccHHHH
Confidence 368999998872 2443322 446666665666666888876642 133365 44433 112345678
Q ss_pred HHHHHHHHHhCCCeEEE-ccC
Q 037393 238 KKAMEVTHYLGGENYVF-WGG 257 (503)
Q Consensus 238 kraiDia~eLGa~~~v~-WgG 257 (503)
..|..+|.+|||+.+.. |+|
T Consensus 220 a~AaRiaaELGADIVKv~yp~ 240 (348)
T PRK09250 220 GQANHLAATIGADIIKQKLPT 240 (348)
T ss_pred HHHHHHHHHHcCCEEEecCCC
Confidence 88889999999998864 444
No 132
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=37.29 E-value=4.6e+02 Score=26.58 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHH----HhcCCceeeeeccCCCCCccccCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKE----LQGTKVRPLWGTAQLFSHPRYMHGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~----l~~tGvkl~~~tanlF~~prfk~GA~TnP 225 (503)
++...++.+.++||+++++--.=.--+.-+.+|.+.-++-+.++++. +.+.|++|..+ |-...-
T Consensus 31 ~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i------------Gd~~~L 98 (226)
T TIGR00055 31 SLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRII------------GDLSLL 98 (226)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE------------eChhhC
Confidence 67778889999999999873222222445566766665555555543 33789999988 666555
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
.++++ +.++++.+.++.-.+-.+.+=....|
T Consensus 99 p~~~~----~~i~~~e~~T~~n~~~~lnia~~Ygg 129 (226)
T TIGR00055 99 SKELQ----EKIKKAEEDTKNNTDFTLNIAFNYGG 129 (226)
T ss_pred CHHHH----HHHHHHHHHhcCCCceEEEEEecCCC
Confidence 55654 44567777887766667777666444
No 133
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.12 E-value=4.6e+02 Score=26.55 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHH----HhcCCceeeeeccCCCCCccccCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKE----LQGTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~----l~~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.++.+.++.+.++||+++++--.=.--+.-+.+|.+.-++-+.+.++. +.+.|++|..+ |.+..
T Consensus 24 ~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~i------------G~~~~ 91 (229)
T PRK10240 24 KSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRII------------GDTSR 91 (229)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE------------eChhh
Confidence 367788899999999998872222222445667777666655555444 33789999998 66655
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYK 287 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya 287 (503)
--+++++ .++++.+.++.-.+=.+.+=....| .+.++++++.+++-.
T Consensus 92 Lp~~l~~----~i~~~e~~T~~~~~~~Lnla~~Ygg------------r~EI~~A~~~~~~~v 138 (229)
T PRK10240 92 FNSRLQE----RIRKSEALTAGNTGLTLNIAANYGG------------RWDIVQGVRQLAEQV 138 (229)
T ss_pred CCHHHHH----HHHHHHHHhcCCCCeEEEEEeccCC------------HHHHHHHHHHHHHHH
Confidence 5555543 3556666676655556666666554 234456666666543
No 134
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=36.33 E-value=4.1e+02 Score=27.97 Aligned_cols=56 Identities=16% Similarity=0.109 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCC-------CCC--------CCCCHHHHHHhHHHHHHHHHHHh
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRD-------IAP--------DGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~D-------l~P--------~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
-++...+..-.|-+...+.|+++|.+|-.+ +.| .|-+++.+-+.+.+|++.+++..
T Consensus 135 eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v 205 (343)
T cd04734 135 DIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV 205 (343)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc
Confidence 345555566667778888999999998743 244 57788888888888777776553
No 135
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=36.03 E-value=2e+02 Score=29.90 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC---CCeEEEccCCcCcC
Q 037393 227 VAVYAYAAAQVKKAMEVTHYLG---GENYVFWGGREGYQ 262 (503)
Q Consensus 227 ~~VRa~Ai~~vkraiDia~eLG---a~~~v~WgGrEGyd 262 (503)
++..+.-++..++-++++.+.. .+.+++||=.|++.
T Consensus 252 ~~~~~~qA~~~~~~~~~~~~~~~~~v~git~Wg~~D~~s 290 (320)
T PF00331_consen 252 AEEEEAQAEYYRDFLTACFSHPPAAVEGITWWGFTDGYS 290 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCTEEEEEESSSBTTGS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCccCCCEEEEECCCCCCc
Confidence 7777778889999999999999 88999999999874
No 136
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.83 E-value=5e+02 Score=26.67 Aligned_cols=99 Identities=17% Similarity=0.106 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCC
Q 037393 146 MAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 146 ~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.-..++...++.+.++||+++++--.=.--+.-+.+|.+.-++-+.+.+.++. +.++++..+ |.+..
T Consensus 55 ~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~~~~~~irv~~i------------G~~~~ 122 (256)
T PRK14828 55 AGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQLAPDGRWRVRHV------------GSLDL 122 (256)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHHHHHhCCeEEEEE------------CChhh
Confidence 34457888889999999999988333222345566777777777777888777 788888877 66666
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
-.+++++ .++++.+.++.-.+-.+.+=.+..|
T Consensus 123 lp~~~~~----~~~~~e~~T~~~~~~~Lnia~~Ygg 154 (256)
T PRK14828 123 LPAPSAN----RLKEAEEATVGNDGIKVNVAVGYGG 154 (256)
T ss_pred CCHHHHH----HHHHHHHhhcCCCCcEEEEEecCCC
Confidence 6666643 3445667777666666777666554
No 137
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=35.63 E-value=5.2e+02 Score=26.74 Aligned_cols=107 Identities=19% Similarity=0.149 Sum_probs=58.5
Q ss_pred CCCCCHHHHHHhHHHHHHHHHHHhc-CCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC--CCe
Q 037393 175 PDGETLKEANANLDEVVALAKELQG-TKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLG--GEN 251 (503)
Q Consensus 175 P~g~t~~e~~~nl~~i~~~lk~l~~-tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLG--a~~ 251 (503)
.+|.+.+|..+ .++.+.. .|+++..+. .| .|+- ..|++....+++++.+.++..++.| -+.
T Consensus 146 rfGi~~~e~~~-------~~~~~~~~~~l~l~Gi~----~H----~gs~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 209 (373)
T cd06828 146 KFGIPLEQALE-------AYRRAKELPGLKLVGLH----CH----IGSQ-ILDLEPFVEAAEKLLDLAAELRELGIDLEF 209 (373)
T ss_pred CCCCCHHHHHH-------HHHHHHhCCCCcEEEEE----Ee----cCCC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 46777765433 3333433 678876662 22 2332 2466677777777666666554444 457
Q ss_pred EEEccCCcCcCCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCC
Q 037393 252 YVFWGGREGYQSLLN---TDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKP 302 (503)
Q Consensus 252 ~v~WgGrEGydy~~q---tD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP 302 (503)
+.+-||- |..|... .|+.+.-+.+.+.++.... ...+.++.+||=-
T Consensus 210 idiGGG~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~l~~EpGR 258 (373)
T cd06828 210 LDLGGGL-GIPYRDEDEPLDIEEYAEAIAEALKELCE----GGPDLKLIIEPGR 258 (373)
T ss_pred EEeCCCC-CcccCCCCCCCCHHHHHHHHHHHHHHHHc----cCCCceEEEecCc
Confidence 8888885 5555432 3555444444444433322 1224588887743
No 138
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=35.39 E-value=4.2e+02 Score=25.57 Aligned_cols=130 Identities=10% Similarity=-0.045 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCc--CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC
Q 037393 229 VYAYAAAQVKKAMEVTHYLGGENYVFWGGREGY--QSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT 306 (503)
Q Consensus 229 VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGy--dy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~ 306 (503)
+-...++++++.|+.|++.|-..++-+-.-.|+ ............+++.+.++.++.+-++. ...+.+|.. |||.
T Consensus 56 ~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~--~~v~~~el~-NEP~ 132 (281)
T PF00150_consen 56 YDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDN--PPVVGWELW-NEPN 132 (281)
T ss_dssp BTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTT--TTTEEEESS-SSGC
T ss_pred ccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCC--CcEEEEEec-CCcc
Confidence 345789999999999999998865544442333 12233455556677777777777754332 236777764 5666
Q ss_pred CCC------------ccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHH---HHcCCeeEEecCC
Q 037393 307 KHQ------------YDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETA---RLNGLLGNIDANT 366 (503)
Q Consensus 307 ~h~------------y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A---~~~gkLg~ihlNd 366 (503)
... +..-...++..|++.+.. .-|.++.+.- +.++......- ...+.++++|.=.
T Consensus 133 ~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~--~~i~~~~~~~---~~~~~~~~~~~P~~~~~~~~~~~H~Y~ 202 (281)
T PF00150_consen 133 GGNDDANWNAQNPADWQDWYQRAIDAIRAADPN--HLIIVGGGGW---GADPDGAAADNPNDADNNDVYSFHFYD 202 (281)
T ss_dssp STTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSS--SEEEEEEHHH---HTBHHHHHHHSTTTTTTSEEEEEEEET
T ss_pred ccCCccccccccchhhhhHHHHHHHHHHhcCCc--ceeecCCCcc---ccccchhhhcCcccccCceeEEeeEeC
Confidence 532 234456677778888843 5666666431 11221111111 2345688999833
No 139
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=34.97 E-value=6.3e+02 Score=27.52 Aligned_cols=141 Identities=15% Similarity=0.224 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCceecccCC-------------CCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceee-ee-------c
Q 037393 150 RMRANFEFIDKLGVDFWCFHDR-------------DIAPDGETLKEANANLDEVVALAKELQGTKVRPL-WG-------T 208 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~-------------Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~-~~-------t 208 (503)
++.+..+.++++|++++.++|- |..|.-.-+ -.-++.+++.++++ |++.. |. .
T Consensus 59 ~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kF---P~Gl~~l~~~i~~~---Gmk~GlW~ePe~v~~~ 132 (394)
T PF02065_consen 59 KILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKF---PNGLKPLADYIHSL---GMKFGLWFEPEMVSPD 132 (394)
T ss_dssp HHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTS---TTHHHHHHHHHHHT---T-EEEEEEETTEEESS
T ss_pred HHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhh---CCcHHHHHHHHHHC---CCeEEEEeccccccch
Confidence 4455566789999999887432 122211111 12366666666544 55542 33 2
Q ss_pred cCCCC-CccccCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHH
Q 037393 209 AQLFS-HPRYMHGA-------------ATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREID 274 (503)
Q Consensus 209 anlF~-~prfk~GA-------------~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d 274 (503)
++++. ||.+..+. +-=..|+||++-.+.+.+.+ ++-|-+ |+=|=.........+......+.
T Consensus 133 S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll---~~~gid-YiK~D~n~~~~~~~~~~~~~~~~ 208 (394)
T PF02065_consen 133 SDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLL---REWGID-YIKWDFNRDITEAGSPSLPEGYH 208 (394)
T ss_dssp SCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHH---HHTT-S-EEEEE-TS-TTS-SSTTS-GHHH
T ss_pred hHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHH---HhcCCC-EEEeccccCCCCCCCCCchHHHH
Confidence 33443 77664321 33347889888877666655 466654 44443321111122222225666
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeccCC
Q 037393 275 HMANFFESAAAYKKKIGFKGNLLIEPKP 302 (503)
Q Consensus 275 ~l~e~l~~v~dya~~iG~~~~~~IEPKP 302 (503)
+...++-.+.+.-++..+ .+.||==.
T Consensus 209 ~~~~~~y~l~~~L~~~~P--~v~iE~Cs 234 (394)
T PF02065_consen 209 RYVLGLYRLLDRLRARFP--DVLIENCS 234 (394)
T ss_dssp HHHHHHHHHHHHHHHHTT--TSEEEE-B
T ss_pred HHHHHHHHHHHHHHHhCC--CcEEEecc
Confidence 666767777776666655 66777554
No 140
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=34.81 E-value=1.7e+02 Score=32.22 Aligned_cols=128 Identities=11% Similarity=0.156 Sum_probs=62.6
Q ss_pred HHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCC-ceeeeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 157 FIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTK-VRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 157 ~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tG-vkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
..++.|+..+.|.|.+.. .+ .+.+.+ +++++.+.| +++.|.... . ......|++
T Consensus 234 l~~~~gv~~~~~~Dd~f~---~~----~~~~~~---l~~~l~~~~~l~i~w~~~~---r-----~~~i~~d~e------- 288 (497)
T TIGR02026 234 LVRTHGVGFFILADEEPT---IN----RKKFQE---FCEEIIARNPISVTWGINT---R-----VTDIVRDAD------- 288 (497)
T ss_pred HHHHcCCCEEEEEecccc---cC----HHHHHH---HHHHHHhcCCCCeEEEEec---c-----cccccCCHH-------
Confidence 345689999999887632 11 222333 455555555 777775210 0 001111332
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHH-----HHHHHHHHHHHHHHHHhcCCCceEEec-cCCCCCCCCC
Q 037393 236 QVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGRE-----IDHMANFFESAAAYKKKIGFKGNLLIE-PKPQEPTKHQ 309 (503)
Q Consensus 236 ~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~-----~d~l~e~l~~v~dya~~iG~~~~~~IE-PKP~EP~~h~ 309 (503)
-++..++.|...+.+ |-|-.+ +..++.. .+...++++ ..++.|+.....+= ==|+|-
T Consensus 289 ----ll~~l~~aG~~~v~i--GiES~~---~~~L~~~~K~~t~~~~~~ai~----~l~~~Gi~~~~~~I~G~P~et---- 351 (497)
T TIGR02026 289 ----ILHLYRRAGLVHISL--GTEAAA---QATLDHFRKGTTTSTNKEAIR----LLRQHNILSEAQFITGFENET---- 351 (497)
T ss_pred ----HHHHHHHhCCcEEEE--ccccCC---HHHHHHhcCCCCHHHHHHHHH----HHHHCCCcEEEEEEEECCCCC----
Confidence 345566778765544 655322 1111111 123334444 44445654332211 225552
Q ss_pred ccccHHHHHHHHHHhCCC
Q 037393 310 YDWDAATAANFLRKYGLI 327 (503)
Q Consensus 310 y~~dvgt~l~fl~~~gl~ 327 (503)
.-++..++.|+.+++.+
T Consensus 352 -~e~~~~t~~~~~~l~~~ 368 (497)
T TIGR02026 352 -DETFEETYRQLLDWDPD 368 (497)
T ss_pred -HHHHHHHHHHHHHcCCC
Confidence 23677788888888854
No 141
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=34.23 E-value=3.5e+02 Score=27.90 Aligned_cols=107 Identities=18% Similarity=0.111 Sum_probs=58.8
Q ss_pred CCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--eE
Q 037393 175 PDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGE--NY 252 (503)
Q Consensus 175 P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~--~~ 252 (503)
-+|-+.++..+ .++.+.+.++.+..+ +.| .|+. ..|++.+..+++++.+.++..++.|-+ .+
T Consensus 142 rfGi~~~e~~~-------~~~~~~~~~l~l~Gl----~~H----~gs~-~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~i 205 (368)
T cd06810 142 KFGLSLSEARA-------ALERAKELDLRLVGL----HFH----VGSQ-ILDLETIVQALSDARELIEELVEMGFPLEML 205 (368)
T ss_pred CcCCCHHHHHH-------HHHHHHhCCCcEEEE----EEc----CCcC-CCCHHHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 36777654332 223333445666554 223 2333 347888899999988888877776643 45
Q ss_pred EEccCCcCcCCC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCC
Q 037393 253 VFWGGREGYQSL-LNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKP 302 (503)
Q Consensus 253 v~WgGrEGydy~-~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP 302 (503)
++=|| =|.+|. -+.| ++.+.+.++.+.+.......+.++.+||=.
T Consensus 206 d~GGG-~~~~y~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~l~~EpGr 251 (368)
T cd06810 206 DLGGG-LGIPYDEQPLD----FEEYAALINPLLKKYFPNDPGVTLILEPGR 251 (368)
T ss_pred EeCCC-cccccCCCCCC----HHHHHHHHHHHHHHHhccCCCcEEEEecCh
Confidence 55444 344554 2233 455666665555432211123477787754
No 142
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=34.16 E-value=5.7e+02 Score=26.78 Aligned_cols=104 Identities=13% Similarity=0.075 Sum_probs=70.8
Q ss_pred CCceecccCCCCCCCCCCHHH-HHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHH
Q 037393 162 GVDFWCFHDRDIAPDGETLKE-ANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKA 240 (503)
Q Consensus 162 G~~~~~fHD~Dl~P~g~t~~e-~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkra 240 (503)
+-..+--|.+.++--+..-+| .++-++.+++.++.....|.+.+-. ||-|-.| -. .+.++++++++
T Consensus 60 ~~~~i~vHApYlINl~s~~~e~~ekS~~~l~~e~~r~~~lG~~~lv~------HpG~~~~----~~---~e~~l~~i~~~ 126 (280)
T COG0648 60 DDVQLSVHAPYLINLASPEKEKVEKSIERLIDEIDRCEQLGAKLLVF------HPGSYLG----QG---KEEGLNRIAEA 126 (280)
T ss_pred cCceEEeecceeecCCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEE------CCccccC----CC---HHHHHHHHHHH
Confidence 566777799988876655544 6666777888888877888876665 5533333 22 45688999999
Q ss_pred HHHHHH-hCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHH
Q 037393 241 MEVTHY-LGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAA 284 (503)
Q Consensus 241 iDia~e-LGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~ 284 (503)
++-... =+...+.-|.+-+|. ......+.|.+-++.+-
T Consensus 127 Ln~~~~~~~v~i~~e~~agegs------~~g~~F~~L~eii~~~~ 165 (280)
T COG0648 127 LNELLEEEGVIILLENTAGEGS------GKGTQFGELAEIIDLIE 165 (280)
T ss_pred HHHHhhccCCeEEEEEeccccC------ccccchhhHHHHHHhhc
Confidence 987776 446778889998884 44444555555555443
No 143
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=34.09 E-value=6.1e+02 Score=27.10 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=103.4
Q ss_pred CccccCCCC--------CCCC-HHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHH
Q 037393 214 HPRYMHGAA--------TSSE-VAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAA 284 (503)
Q Consensus 214 ~prfk~GA~--------TnPD-~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~ 284 (503)
-|||..|++ ++|| .--+....+.-++.++.-.+-|++.+.|=.=+| ..++..++..+.
T Consensus 113 k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D-------------~l~~KaA~~a~~ 179 (311)
T COG0646 113 KPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFD-------------TLNAKAAVFAAR 179 (311)
T ss_pred CceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhcc-------------HHHHHHHHHHHH
Confidence 478888763 2332 233666777778888888999999887755444 234445555555
Q ss_pred HHHHhcCCCceEEeccCCCCCCCCCcc-ccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEe
Q 037393 285 AYKKKIGFKGNLLIEPKPQEPTKHQYD-WDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNID 363 (503)
Q Consensus 285 dya~~iG~~~~~~IEPKP~EP~~h~y~-~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ih 363 (503)
+--.+.|.+..+.|-=--.+ +..+.. -++...+.-++.+| +.-+|+|-=.|= .+.-+|...++.-.....|++
T Consensus 180 ~~~~~~~~~LPv~~s~Ti~~-sG~tl~Gq~~~a~~~~l~~~~-~~~vGlNCa~Gp----~~m~~~l~~ls~~~~~~vs~~ 253 (311)
T COG0646 180 EVFEELGVRLPVMISGTITD-SGRTLSGQTIEAFLNSLEHLG-PDAVGLNCALGP----DEMRPHLRELSRIADAFVSVY 253 (311)
T ss_pred HHHHhcCCcccEEEEEEEec-CceecCCCcHHHHHHHhhccC-CcEEeeccccCH----HHHHHHHHHHHhccCceEEEe
Confidence 55555666555443322222 333332 34555566667788 456999987774 334567677777789999999
Q ss_pred cCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhCC
Q 037393 364 ANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNGG 397 (503)
Q Consensus 364 lNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~gG 397 (503)
-|-|-+...-..=-.+.++.++...+-.+.+.|+
T Consensus 254 PNAGLP~~~g~~~~Y~~~p~~~a~~~~~f~~~g~ 287 (311)
T COG0646 254 PNAGLPNAFGERAVYDLTPEYMAEALAEFAEEGG 287 (311)
T ss_pred CCCCCCcccCCccccCCCHHHHHHHHHHHHHhCC
Confidence 9999775433311134577777777777777764
No 144
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=33.11 E-value=70 Score=35.07 Aligned_cols=52 Identities=13% Similarity=0.260 Sum_probs=43.2
Q ss_pred HHHHHhCCceecccCCCCCC-----CCCCHHHHHHhHHHHHHHHHHHhcCCceeeee
Q 037393 156 EFIDKLGVDFWCFHDRDIAP-----DGETLKEANANLDEVVALAKELQGTKVRPLWG 207 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P-----~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~ 207 (503)
+.|-++|++-|+++-.+|-. -|-+.+.+++|+++|.+..|-.++.|+.++..
T Consensus 72 ~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcits 128 (627)
T KOG4238|consen 72 EYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITS 128 (627)
T ss_pred HHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeeh
Confidence 47899999999997666543 57788999999999998888777999997764
No 145
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.10 E-value=5.5e+02 Score=26.29 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHH----HHhcCCceeeeeccCCCCCccccCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAK----ELQGTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk----~l~~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.++...++.+.++||+++++-..-.-=+.-+.+|.+.-++-+.+.++ .+.+.|+++.++ |-...
T Consensus 51 ~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~~~~~~~~iri~~i------------G~~~~ 118 (249)
T PRK14831 51 DALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRRELEELMEENVRIRFV------------GDLDP 118 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE------------echhh
Confidence 46778889999999999998333222234555565544443333333 333789999988 66655
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
-.++++ +.++++.+.++.-..-.+.+-....|
T Consensus 119 Lp~~l~----~~i~~~e~~T~~~~~~~Lnia~~Ygg 150 (249)
T PRK14831 119 LPKSLQ----EEISRSTELTKNNNGIHFNVCTNYGG 150 (249)
T ss_pred CCHHHH----HHHHHHHHHhccCCceEEEEEecCCC
Confidence 566664 34555677777655556777776555
No 146
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=33.03 E-value=5.2e+02 Score=25.97 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHH----hcCCceeeeeccCCCCCccccCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKEL----QGTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l----~~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.++...++.+.++||+++++--.=.-=+.-+.+|...-++-+.++++++ .+.|+++..+ |-...
T Consensus 31 ~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~i~vr~i------------Gd~~~ 98 (221)
T cd00475 31 EKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRILKELEKLGVRIRII------------GDLSL 98 (221)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE------------eChhh
Confidence 3677788899999999988722221124456677666666555555553 2679999888 66555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYK 287 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya 287 (503)
--++++ +.++++.+.++.-.+-.+.+-...+|- +-++++++.+++..
T Consensus 99 Lp~~~~----~~~~~~e~~T~~~~~~~lni~~~Y~gr------------~eI~~a~~~~~~~~ 145 (221)
T cd00475 99 LPESLQ----KEIKKAEEATKNNTGFTLNVAFNYGGR------------QEIIHAVREIAEKV 145 (221)
T ss_pred CCHHHH----HHHHHHHHHhccCCCcEEEEEecCCCH------------HHHHHHHHHHHHHH
Confidence 555654 445667777777666678887776652 34456666665543
No 147
>TIGR03099 dCO2ase_PEP1 pyridoxal-dependent decarboxylase, exosortase system type 1 associated. The sequences in this family contain the pyridoxal binding domain (pfam02784) and C-terminal sheet domain (pfam00278) of a family of Pyridoxal-dependent decarboxylases. Characterized enzymes in this family decarboxylate substrates such as ornithine, diaminopimelate and arginine. The genes of the family modeled here, with the exception of those observed in certain Burkholderia species, are all found in the context of exopolysaccharide biosynthesis loci containing the exosortase/PEP-CTERM protein sorting system. More specifically, these are characteristic of the type 1 exosortase system represented by the Genome Property GenProp0652. The substrate of these enzymes may be a precursor of the carrier or linker which is hypothesized to release the PEP-CTERM protein from the exosortase enzyme. These enzymes are apparently most closely related to the diaminopimelate decarboxylase modeled by TIGR01048
Probab=32.77 E-value=6.1e+02 Score=26.73 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHH-HHHHHHHHHhCC--Ce
Q 037393 175 PDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQV-KKAMEVTHYLGG--EN 251 (503)
Q Consensus 175 P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~v-kraiDia~eLGa--~~ 251 (503)
.+|-+.++.. +++ +.+.+.|+++...+ +-.|+- .+|++....++..+ ..+.++.++.|- +.
T Consensus 165 rFGi~~~e~~----~~~---~~~~~~~l~l~Glh--------~h~gs~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 228 (398)
T TIGR03099 165 QFGIDAEQVP----AAL---AFIKAADLDFQGFH--------IFAGSQ-NLNAEAIIEAQAKTLALALRLAESAPAPVRV 228 (398)
T ss_pred cCCCCHHHHH----HHH---HHHHhCCCeEEEEE--------eccccc-CCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 4677775433 322 22334488887762 223442 33554444444444 356777777764 57
Q ss_pred EEEccCCcCcCCCCC---CCHHHHHHHHHHHHHHHHHH-HHhcCCCceEEecc
Q 037393 252 YVFWGGREGYQSLLN---TDMGREIDHMANFFESAAAY-KKKIGFKGNLLIEP 300 (503)
Q Consensus 252 ~v~WgGrEGydy~~q---tD~~~~~d~l~e~l~~v~dy-a~~iG~~~~~~IEP 300 (503)
+.+-||. |..|... .|+. ++.+.+..+.+. .+.. .+.++.+||
T Consensus 229 idiGGG~-~v~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~-~~~~l~~EP 275 (398)
T TIGR03099 229 INIGGGF-GIPYFPGNPPLDLA----PVGAALAALFARLRDAL-PEVEILLEL 275 (398)
T ss_pred EEeCCcc-cCCCCCCCCCCCHH----HHHHHHHHHHHHHhhcC-CCCEEEEec
Confidence 8888884 6555322 3544 444444444332 1112 235888876
No 148
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=32.69 E-value=5.9e+02 Score=26.52 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCC-------CCC--------CCCCHHHHHHhHHHHHHHHHHHh
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRD-------IAP--------DGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~D-------l~P--------~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
++......-+|-+...+.|+++|++|=.+ +.| .|-+++.+-+-+.++++.+++..
T Consensus 144 I~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~av 213 (338)
T cd04733 144 IEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAV 213 (338)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHc
Confidence 44455555566678888999999997554 444 36788877777777776666554
No 149
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=32.66 E-value=44 Score=37.01 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=59.0
Q ss_pred cccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceecc
Q 037393 91 AFKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCF 168 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~f 168 (503)
.|+.|..|=..+ |.|. .+.|||+++ .-+-..|. +.. +-+..-+.-+..|+.|.+.|+ +.||+
T Consensus 67 ~Yhry~EDI~Lm-~elG~~~yRfSIsW-sRI~P~G~-----~~~---------~N~~gl~~Y~~lid~l~~~GI~P~vTL 130 (477)
T PRK15014 67 FYGHYKEDIKLF-AEMGFKCFRTSIAW-TRIFPKGD-----EAQ---------PNEEGLKFYDDMFDELLKYNIEPVITL 130 (477)
T ss_pred cccccHHHHHHH-HHcCCCEEEecccc-eeeccCCC-----CCC---------CCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 466676666555 4554 678999986 34333322 111 122222345567789999998 89999
Q ss_pred cCCCCCCCC-----CCHHHHHHhHHHHHHHHHHHh-cCCc-eeeeeccC
Q 037393 169 HDRDIAPDG-----ETLKEANANLDEVVALAKELQ-GTKV-RPLWGTAQ 210 (503)
Q Consensus 169 HD~Dl~P~g-----~t~~e~~~nl~~i~~~lk~l~-~tGv-kl~~~tan 210 (503)
||-|+ |.. -.+. +.+.++..+++.+.+. ..|= +-.|+|-|
T Consensus 131 ~H~dl-P~~L~~~yGGW~-n~~~~~~F~~Ya~~~f~~fgdrVk~WiT~N 177 (477)
T PRK15014 131 SHFEM-PLHLVQQYGSWT-NRKVVDFFVRFAEVVFERYKHKVKYWMTFN 177 (477)
T ss_pred eCCCC-CHHHHHhcCCCC-ChHHHHHHHHHHHHHHHHhcCcCCEEEEec
Confidence 99884 431 1111 1234555556666665 5553 33788855
No 150
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.65 E-value=6.1e+02 Score=26.66 Aligned_cols=171 Identities=18% Similarity=0.207 Sum_probs=104.1
Q ss_pred HHHHHHHHHHhCCceecc--------cCCCCCCCCCCHHHHHHhHH-------HHHH-HHHHHhcCCceeeeeccCCCCC
Q 037393 151 MRANFEFIDKLGVDFWCF--------HDRDIAPDGETLKEANANLD-------EVVA-LAKELQGTKVRPLWGTAQLFSH 214 (503)
Q Consensus 151 ~~~afe~l~kLG~~~~~f--------HD~Dl~P~g~t~~e~~~nl~-------~i~~-~lk~l~~tGvkl~~~tanlF~~ 214 (503)
+-..++.|.+-|++.++| |-.||.|...++....+.+. .+.. .+..+...|.|+..-. .+..+
T Consensus 57 vg~lik~l~~~~v~~vVl~G~v~~Rp~~~~L~~d~~~l~~lp~Iv~~~~~gDDaLLk~vi~~~E~~GfKvigah-ei~~~ 135 (279)
T COG3494 57 VGKLIKLLKTEGVDRVVLAGGVERRPNFRDLRPDKIGLAVLPKIVEALIRGDDALLKAVIDFIESRGFKVIGAH-EIVPG 135 (279)
T ss_pred HHHHHHHHHHcCCcEEEEecccccCcchhhcccccchhhHHHHHHHHhccCcHHHHHHHHHHHHhcCcEEecHh-hhhhh
Confidence 445678899999999999 67789998888532222221 1111 2233338899987631 11112
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC----CeEEEccC-------CcCcCCCCCCCHHHHHHHHHHHHHHH
Q 037393 215 PRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG----ENYVFWGG-------REGYQSLLNTDMGREIDHMANFFESA 283 (503)
Q Consensus 215 prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa----~~~v~WgG-------rEGydy~~qtD~~~~~d~l~e~l~~v 283 (503)
--.-.|.+|+..|+-.. ..-..-++++|+.||+ ...|.=+| .||+| +.|+.+
T Consensus 136 ll~~~g~lt~~~P~~~d--~~dI~~g~~aA~~lg~lDVGQ~aV~~~g~vvAvEg~EGTd---------------~ml~R~ 198 (279)
T COG3494 136 LLAETGPLTKKEPDNED--LRDIELGIEAANALGALDVGQGAVVVGGRVVAVEGAEGTD---------------AMLRRV 198 (279)
T ss_pred hccCCCcccCCCCChhh--HHHHHHHHHHHHHhccccccceeEEeCCeEEEEeeccchH---------------HHHHHH
Confidence 22223777665544332 2345667888888774 34444444 57765 567777
Q ss_pred HHHHHh--cC-CCceEEeccCCCCCCCCCccccHH-HHHHHHHHhCCCCCceeecccccccccC
Q 037393 284 AAYKKK--IG-FKGNLLIEPKPQEPTKHQYDWDAA-TAANFLRKYGLINDFKLNIECNHATLSG 343 (503)
Q Consensus 284 ~dya~~--iG-~~~~~~IEPKP~EP~~h~y~~dvg-t~l~fl~~~gl~~~~gVniD~gHa~lAG 343 (503)
.++..+ .+ -++.+.=-+||+.- .+..+|++| .|+.-+.+.|+ -|+-+|.|-+..-+
T Consensus 199 a~lr~~gr~~rr~gvLvK~aKp~QD-~R~DlPtIG~~Ti~~a~kaGl---aGIaieagr~lile 258 (279)
T COG3494 199 ADLRKAGRAERRGGVLVKMAKPQQD-ERADLPTIGPNTIENAAKAGL---AGIAIEAGRVLILE 258 (279)
T ss_pred HHHhhcccccccCCEEEEccCCCcc-ccccCCccCHHHHHHHHHcCc---cceeeecCcEEEec
Confidence 777653 00 12344455777652 356788887 47777888996 49999999876654
No 151
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=32.11 E-value=2.1e+02 Score=28.58 Aligned_cols=61 Identities=13% Similarity=0.061 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 238 KKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 238 kraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
.+.++.+.+.|.+.+.+...-. +...+.++..-.+...+.+..+++++++.|+...|.+|.
T Consensus 72 ~~~v~~a~~~g~~~i~i~~~~s--~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~ 132 (259)
T cd07939 72 KEDIEAALRCGVTAVHISIPVS--DIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAED 132 (259)
T ss_pred HHHHHHHHhCCcCEEEEEEecC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeecc
Confidence 3446667788888777766422 111222333334555666777888888899877777753
No 152
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=32.02 E-value=60 Score=35.87 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=57.5
Q ss_pred cccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceecc
Q 037393 91 AFKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCF 168 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~f 168 (503)
.|+.|..|=.++- .|. .+.|||+++ --+-.. |.+.. ++ ..-++ -=+..|+.|.+.|+ |.||+
T Consensus 65 ~Yhry~eDi~Lm~-~lG~~~yRfSIsW-sRI~P~-----G~~~~---~N--~~gl~----~Y~~lid~L~~~GI~P~VTL 128 (476)
T PRK09589 65 FYHRYKEDIALFA-EMGFKCFRTSIAW-TRIFPQ-----GDELE---PN--EEGLQ----FYDDLFDECLKQGIEPVVTL 128 (476)
T ss_pred HHHhhHHHHHHHH-HcCCCEEEeccch-hhcCcC-----CCCCC---CC--HHHHH----HHHHHHHHHHHcCCEEEEEe
Confidence 4666666655443 333 578999986 222222 21111 10 11233 44566778999998 89999
Q ss_pred cCCCCCCCC-----CCHHHHHHhHHHHHHHHHHHh-cCCcee-eeeccC
Q 037393 169 HDRDIAPDG-----ETLKEANANLDEVVALAKELQ-GTKVRP-LWGTAQ 210 (503)
Q Consensus 169 HD~Dl~P~g-----~t~~e~~~nl~~i~~~lk~l~-~tGvkl-~~~tan 210 (503)
||-| .|.. -.+. +.+.++..+++.+.+. ..|=+| .|+|-|
T Consensus 129 ~H~d-lP~~L~~~yGGW~-n~~~i~~F~~YA~~~f~~fgdrVk~WiT~N 175 (476)
T PRK09589 129 SHFE-MPYHLVTEYGGWR-NRKLIDFFVRFAEVVFTRYKDKVKYWMTFN 175 (476)
T ss_pred cCCC-CCHHHHHhcCCcC-ChHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999 4531 1222 1234555666777666 666444 788744
No 153
>cd03680 MM_CoA_mutase_ICM_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, isobutyryl-CoA mutase (ICM)-like subfamily; contains archaeal and bacterial proteins similar to the large subunit of Streptomyces cinnamonensis coenzyme B12-dependent ICM. ICM from S. cinnamonensis is comprised of a large and a small subunit. The holoenzyme appears to be an alpha2beta2 heterotetramer with up to 2 molecules of coenzyme B12 bound. The small subunit binds coenzyme B12. ICM catalyzes the reversible rearrangement of n-butyryl-CoA to isobutyryl-CoA, intermediates in fatty acid and valine catabolism, which in S. cinnamonensis can be converted to methylmalonyl-CoA and used in polyketide synthesis.
Probab=31.92 E-value=2e+02 Score=32.63 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=33.0
Q ss_pred cHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcC
Q 037393 313 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNG 357 (503)
Q Consensus 313 dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~g 357 (503)
.++.++.++.+ ..|+---|+|+.-|.+=+|-|+++++++++..+
T Consensus 207 ~~~d~~~~~~~-~~p~~~~isv~g~~~~eAGAt~vQELA~tLA~~ 250 (538)
T cd03680 207 LVTDIIEYCAK-NVPKWNPISISGYHIREAGATAVQELAFTLADG 250 (538)
T ss_pred HHHHHHHHHHH-hCCCceEEEEechhHhhCCCCHHHHHHHHHHHH
Confidence 45555566655 345544799999999999999999999876654
No 154
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=31.76 E-value=75 Score=35.20 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=60.6
Q ss_pred cccccCccchhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceeccc
Q 037393 91 AFKWYNPEEVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCFH 169 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~fH 169 (503)
.|+.|..|-..+-+-=-...|||+++. -+-.+|. +.. +-+.+-+.-+..|+.|.+.|+ +.||+|
T Consensus 69 ~Yhry~eDi~l~~~lG~~~yR~si~Ws-Ri~P~g~-----~~~---------~n~~~~~~Y~~~i~~l~~~gi~p~VtL~ 133 (474)
T PRK09852 69 FYHRYKEDIALMAEMGFKVFRTSIAWS-RLFPQGD-----ELT---------PNQQGIAFYRSVFEECKKYGIEPLVTLC 133 (474)
T ss_pred hhhhhHHHHHHHHHcCCCeEEeeceee-eeeeCCC-----CCC---------CCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 366667666554322235789999986 4333332 111 123344467778899999998 688999
Q ss_pred CCCCCCCCCCHHH------HHHhHHHHHHHHHHHh-cCCc-eeeeeccC
Q 037393 170 DRDIAPDGETLKE------ANANLDEVVALAKELQ-GTKV-RPLWGTAQ 210 (503)
Q Consensus 170 D~Dl~P~g~t~~e------~~~nl~~i~~~lk~l~-~tGv-kl~~~tan 210 (503)
|-| .|.- +.+ +.+.++..+++.+.+. ..|= +-.|.|-|
T Consensus 134 H~~-~P~~--l~~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~WiTfN 179 (474)
T PRK09852 134 HFD-VPMH--LVTEYGSWRNRKMVEFFSRYARTCFEAFDGLVKYWLTFN 179 (474)
T ss_pred CCC-CCHH--HHHhcCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEEeec
Confidence 888 4532 111 2345555666766666 5553 33788844
No 155
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=31.68 E-value=4.8e+02 Score=25.15 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=82.0
Q ss_pred HHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHH
Q 037393 154 NFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAY 232 (503)
Q Consensus 154 afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~ 232 (503)
..+...+.|++.+|.|-. ++...++.. ++++++.... .|-+|.. +.
T Consensus 22 ~~~~a~~~~~~av~v~p~------------------~v~~~~~~l~~~~~~v~~~~-------~fp~g~~--~~------ 68 (203)
T cd00959 22 LCDEAKEYGFAAVCVNPC------------------FVPLAREALKGSGVKVCTVI-------GFPLGAT--TT------ 68 (203)
T ss_pred HHHHHHHcCCCEEEEcHH------------------HHHHHHHHcCCCCcEEEEEE-------ecCCCCC--cH------
Confidence 334566689999987611 111223333 6677766652 2444552 21
Q ss_pred HHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccc
Q 037393 233 AAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDW 312 (503)
Q Consensus 233 Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~ 312 (503)
+.....++-|.++||+.+.++.-. |+ ....++ +.+.+-+..+++.++ |...++-+|.-+.. +-
T Consensus 69 --~~k~~eve~A~~~GAdevdvv~~~-g~--~~~~~~----~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~------~~ 131 (203)
T cd00959 69 --EVKVAEAREAIADGADEIDMVINI-GA--LKSGDY----EAVYEEIAAVVEACG--GAPLKVILETGLLT------DE 131 (203)
T ss_pred --HHHHHHHHHHHHcCCCEEEEeecH-HH--HhCCCH----HHHHHHHHHHHHhcC--CCeEEEEEecCCCC------HH
Confidence 112222555777899988887762 21 223344 445555666666654 44456666664442 22
Q ss_pred cHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCCeeEEecCC
Q 037393 313 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGLLGNIDANT 366 (503)
Q Consensus 313 dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gkLg~ihlNd 366 (503)
.+..+...+.+.|.+ -+|.. +|= .-.|-++++.-.+...-+.=..|-+..
T Consensus 132 ~i~~a~ria~e~GaD-~IKTs--TG~-~~~~at~~~v~~~~~~~~~~v~ik~aG 181 (203)
T cd00959 132 EIIKACEIAIEAGAD-FIKTS--TGF-GPGGATVEDVKLMKEAVGGRVGVKAAG 181 (203)
T ss_pred HHHHHHHHHHHhCCC-EEEcC--CCC-CCCCCCHHHHHHHHHHhCCCceEEEeC
Confidence 456666666777765 35544 332 124566665333333322112555544
No 156
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.52 E-value=5.9e+02 Score=26.16 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHH----HHhcCCceeeeeccCCCCCccccCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAK----ELQGTKVRPLWGTAQLFSHPRYMHGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk----~l~~tGvkl~~~tanlF~~prfk~GA~TnP 225 (503)
++...++.+.++||+++++--.=.--+.-+.+|.+..++-+.+.++ .+.+.|++|..+ |.....
T Consensus 46 ~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~irv~vi------------G~~~~L 113 (253)
T PRK14836 46 AVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDREVDKLHRNGIRVRFI------------GDRSRL 113 (253)
T ss_pred HHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE------------eccccC
Confidence 6777888999999999887332222234555666665554444433 344789999888 776666
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
.+++++ .++++.+.++.-.+=.+.+=....|
T Consensus 114 p~~~~~----~i~~~e~~T~~n~~~~Lnla~~Ygg 144 (253)
T PRK14836 114 SPKLQE----RMEYAERLTASNTRLILSLAVSYGG 144 (253)
T ss_pred CHHHHH----HHHHHHHHhccCCceEEEEEecCCC
Confidence 666654 5666777777766667777766555
No 157
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=31.49 E-value=1.6e+02 Score=28.95 Aligned_cols=61 Identities=16% Similarity=0.251 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh--cCCceeeeecc
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ--GTKVRPLWGTA 209 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~--~tGvkl~~~ta 209 (503)
.+.+.+.+..++++.++||++.+.+|-... +. .+.+ +.++.+++.++++. +.|+++..-|.
T Consensus 79 r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~-~~-~~~e---~~~~~~~~~l~~l~~~~~gv~l~lEn~ 141 (273)
T smart00518 79 VEKSIERLIDEIKRCEELGIKALVFHPGSY-LK-QSKE---EALNRIIESLNEVIDETKGVVILLETT 141 (273)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccc-cC-CCHH---HHHHHHHHHHHHHHhccCCcEEEEecc
Confidence 445566788999999999999999986432 22 2222 34444455666655 57888766543
No 158
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=31.37 E-value=4.9e+02 Score=30.22 Aligned_cols=143 Identities=13% Similarity=0.101 Sum_probs=88.3
Q ss_pred HHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 156 EFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
..|++.|.+.|-+--++ .+..+++..|+ +++...|+.+.-+ ++.+.+|+. |
T Consensus 48 ~~l~~aGceiVRvtv~~--------~~~a~~l~~I~---~~l~~~G~~iPLV-ADIHF~~~~---------------A-- 98 (611)
T PRK02048 48 KRIIDAGGEYVRLTTQG--------VREAENLMNIN---IGLRSQGYMVPLV-ADVHFNPKV---------------A-- 98 (611)
T ss_pred HHHHHcCCCEEEEcCCC--------HHHHHhHHHHH---HHHhhcCCCCCEE-EecCCCcHH---------------H--
Confidence 37899999988554444 44456777644 4444778887777 777776442 1
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcCc--------CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 236 QVKKAMEVTHYLGGENYVFWGGREGY--------QSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 236 ~vkraiDia~eLGa~~~v~WgGrEGy--------dy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
..|++. .+.+-+=||-=|- +|- ..+|.++++++.+-+..+++.+++.|.-+||.+-.=-=+.+-
T Consensus 99 --~~a~~~-----v~kiRINPGN~~~~~k~f~~~~Yt-deey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN~GSL~~~i 170 (611)
T PRK02048 99 --DVAAQY-----AEKVRINPGNYVDPGRTFKKLEYT-DEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVNHGSLSDRI 170 (611)
T ss_pred --HHHHHh-----hCCEEECCCcCCCccccccccccc-hhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHH
Confidence 223332 4555555552221 231 567999999999999999999999998888854322222221
Q ss_pred -CCc----cccHHHHHHHH---HHhCCCCCceeeccc
Q 037393 308 -HQY----DWDAATAANFL---RKYGLINDFKLNIEC 336 (503)
Q Consensus 308 -h~y----~~dvgt~l~fl---~~~gl~~~~gVniD~ 336 (503)
..| ..-+.+++.|+ +++|..+ +.+-+=.
T Consensus 171 ~~~yg~tpe~mVeSAle~~~i~e~~~f~d-iviS~Ks 206 (611)
T PRK02048 171 MSRYGDTPEGMVESCMEFLRICVEEHFTD-VVISIKA 206 (611)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHCCCCc-EEEEEEe
Confidence 112 22355666665 6677754 6666544
No 159
>PF00374 NiFeSe_Hases: Nickel-dependent hydrogenase; InterPro: IPR001501 Hydrogenases are enzymes that catalyze the reversible activation of hydrogen and which occur widely in prokaryotes as well as in some eukaryotes. There are various types of hydrogenases, but all of them seem to contain at least one iron-sulphur cluster. They can be broadly divided into two groups: hydrogenases containing nickel and, in some cases, also selenium (the [NiFe] and [NiFeSe] hydrogenases) and those lacking nickel (the [Fe] hydrogenases). The [NiFe] and [NiFeSe] hydrogenases are heterodimer that consist of a small subunit that contains a signal peptide and a large subunit. All the known large subunits seem to be evolutionary related []; they contain two Cys-x-x-Cys motifs; one at their N-terminal end; the other at their C-terminal end. These four cysteines are involved in the binding of nickel []. In the [NiFeSe] hydrogenases the first cysteine of the C-terminal motif is a selenocysteine which has experimentally been shown to be a nickel ligand [].; GO: 0016151 nickel ion binding; PDB: 1E3D_D 3USC_M 3USE_L 3UQY_M 3RGW_L 1CC1_L 1YQ9_I 2FRV_D 1FRV_B 3MYR_F ....
Probab=31.34 E-value=1.3e+02 Score=33.71 Aligned_cols=94 Identities=18% Similarity=0.194 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------hCCCe---EEEcc
Q 037393 187 LDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHY-------LGGEN---YVFWG 256 (503)
Q Consensus 187 l~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~e-------LGa~~---~v~Wg 256 (503)
+.++-+.++.+.++|= +.--+..++.||.|+. .|++--.|+++-++|+++.++ +||++ -.+.+
T Consensus 110 ~~~vq~kl~~~v~~g~-lg~f~~~y~~h~~y~l------~pe~nl~~v~hYleAL~~qr~~~ei~AIfGGK~PH~s~~vp 182 (507)
T PF00374_consen 110 FKAVQDKLKKFVESGQ-LGPFANGYWGHPDYKL------PPEVNLIAVAHYLEALEIQRKAHEIMAIFGGKWPHPSSIVP 182 (507)
T ss_dssp HHHHHHHHHHHHHTTH-HGGGTTHTTT-TT--S-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSS-SSEET
T ss_pred HHHHHHHHHHHhccCC-CCccCCCCCCCccccC------ChhHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCCccC
Confidence 4445556666655443 4556678888888883 455666666666666666655 77773 24444
Q ss_pred CCcCcCCCCCCCH--HHHHHHHHHHHHHHHHHHHh
Q 037393 257 GREGYQSLLNTDM--GREIDHMANFFESAAAYKKK 289 (503)
Q Consensus 257 GrEGydy~~qtD~--~~~~d~l~e~l~~v~dya~~ 289 (503)
| |--...+.|- .+.+..+...++++.+...+
T Consensus 183 G--GVt~~~~~~~~~~erl~~~~~~~~e~~~Fi~~ 215 (507)
T PF00374_consen 183 G--GVTCAPNLDDINMERLAEFKSLLEEVRDFIEN 215 (507)
T ss_dssp T--EESSGCGGSHB-HHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 3333444443 33456666667777776544
No 160
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.28 E-value=5.9e+02 Score=26.09 Aligned_cols=157 Identities=17% Similarity=0.080 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHH----HhcCCceeeeeccCCCCCccccCCCCC
Q 037393 148 KRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKE----LQGTKVRPLWGTAQLFSHPRYMHGAAT 223 (503)
Q Consensus 148 ~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~----l~~tGvkl~~~tanlF~~prfk~GA~T 223 (503)
-.++...++.+.++||+++++--.=.--+..+.+|...-++-+.+++.+ +.+.|++|..+ |...
T Consensus 52 ~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~iri~vi------------G~~~ 119 (251)
T PRK14830 52 MDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKFVPELIENNVKVNVI------------GDTD 119 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEE------------cChh
Confidence 3478888899999999998873322222345566666665544444444 23579999888 5555
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCC
Q 037393 224 SSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQ 303 (503)
Q Consensus 224 nPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~ 303 (503)
.--+++++. ++++.+.++.=.+-.+.+=.+..| .+.++++++.+++-..+- .+. |.
T Consensus 120 ~Lp~~~~~~----~~~~e~~T~~~~~~~Lnia~~Ygg------------R~EI~~A~~~~~~~v~~g----~l~----~~ 175 (251)
T PRK14830 120 RLPEHTLRA----LEKAIEKTKNNTGLILNFALNYGG------------RAEIVSAVKEIAKDVLDG----KLN----PE 175 (251)
T ss_pred hCCHHHHHH----HHHHHHHccCCCceEEEEEecCCC------------HHHHHHHHHHHHHHHHcC----CCC----hH
Confidence 444455433 566667776655556777777665 234456666665543322 221 11
Q ss_pred CCCCCCccccHHHHHHHHHHhCCCCCceeeccc-ccccccCCCHHH
Q 037393 304 EPTKHQYDWDAATAANFLRKYGLINDFKLNIEC-NHATLSGHSCHH 348 (503)
Q Consensus 304 EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~-gHa~lAG~n~ah 348 (503)
+- +..+.-..+..-+.|+ .-|.|=+ |+.-+.|=-+-|
T Consensus 176 ~I-------~e~~i~~~L~~~~~pd-pDLlIRTsGe~RLSnFLlWQ 213 (251)
T PRK14830 176 DI-------TEELISNYLMTKGLPD-PDLLIRTSGELRLSNFLLWQ 213 (251)
T ss_pred hC-------CHHHHHHHhCcCCCCC-CCEEEeCCCCCcccCChHHH
Confidence 10 1111111222223443 6677777 787788777776
No 161
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=31.23 E-value=1.6e+02 Score=31.41 Aligned_cols=69 Identities=17% Similarity=0.167 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCC------------CeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 037393 222 ATSSEVAVYAYAAAQVKKAMEVTHYLGG------------ENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKK 289 (503)
Q Consensus 222 ~TnPD~~VRa~Ai~~vkraiDia~eLGa------------~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~ 289 (503)
+|++.++ -++.+|+|+..+...+. ..|++= .-..|++...+.|.+++..+.+...+
T Consensus 191 l~c~~~d----GIe~IK~aL~~~~~~~~~~~~i~i~~igaP~Y~i~--------~~~~d~k~g~~~l~~a~~~i~~~i~~ 258 (319)
T PTZ00248 191 VSCFDYE----GIDAVKEALIAGQEVATDECKITIKLIAPPQYVIV--------TTCSDKDKGMEIIGAALEAIKEVIKK 258 (319)
T ss_pred EEeCCCc----hHHHHHHHHHHHHhcCCCcCcEEEEEEcCCeEEEE--------EEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 68899999999876544 334332 22579999999999999999999999
Q ss_pred cCCCceEEeccCC
Q 037393 290 IGFKGNLLIEPKP 302 (503)
Q Consensus 290 iG~~~~~~IEPKP 302 (503)
.|-.+.|--+||.
T Consensus 259 ~gG~~~~~~~p~~ 271 (319)
T PTZ00248 259 KGGDFKVKGEPEV 271 (319)
T ss_pred cCCeEEEEECCEE
Confidence 8876666666664
No 162
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=30.62 E-value=6.2e+02 Score=29.36 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=83.8
Q ss_pred HHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 156 EFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
..|++.|.+.|-+--++ .+..+++..|. ++|...|..+.-+ ++.+.+| .+-
T Consensus 52 ~~L~~aGceiVRvtvp~--------~~~A~al~~I~---~~L~~~g~~iPLV-ADIHF~~------------~~A----- 102 (606)
T PRK00694 52 CALQEWGCDIVRVTVQG--------LKEAQACEHIK---ERLIQQGISIPLV-ADIHFFP------------QAA----- 102 (606)
T ss_pred HHHHHcCCCEEEEcCCC--------HHHHHhHHHHH---HHHhccCCCCCEE-eecCCCh------------HHH-----
Confidence 47899999988554444 34456777643 4455788888777 6766643 221
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcC--------cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 236 QVKKAMEVTHYLGGENYVFWGGREG--------YQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 236 ~vkraiDia~eLGa~~~v~WgGrEG--------ydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
..|++. .+.+-+=||-=| =+|- ..+|.++++++.+-+..+++.+++.|.-+||.+-.=-=+.+-
T Consensus 103 --~~a~~~-----vdkiRINPGNi~~~~k~F~~~~Yt-DeeY~~el~~I~e~~~~vV~~ake~~~~IRIGvN~GSL~~~i 174 (606)
T PRK00694 103 --MHVADF-----VDKVRINPGNYVDKRNMFTGKIYT-DEQYAHSLLRLEEKFSPLVEKCKRLGKAMRIGVNHGSLSERV 174 (606)
T ss_pred --HHHHHh-----cCceEECCcccCCccccccccccc-hhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecCCcCchHHH
Confidence 122222 344445455222 2332 456999999999999999999999998888855332222221
Q ss_pred -CCc----cccHHHHHHHH---HHhCCCCCceee
Q 037393 308 -HQY----DWDAATAANFL---RKYGLINDFKLN 333 (503)
Q Consensus 308 -h~y----~~dvgt~l~fl---~~~gl~~~~gVn 333 (503)
..| ..-+.+++.|+ +++|..+ +.+-
T Consensus 175 ~~~yG~tpegmVeSAle~~~i~e~~~f~d-iviS 207 (606)
T PRK00694 175 MQRYGDTIEGMVYSALEYIEVCEKLDYRD-VVFS 207 (606)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHCCCCc-EEEE
Confidence 122 22355666665 5566643 4443
No 163
>TIGR01048 lysA diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis.
Probab=30.56 E-value=6.8e+02 Score=26.54 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=59.1
Q ss_pred CCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--C
Q 037393 174 APDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG--E 250 (503)
Q Consensus 174 ~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa--~ 250 (503)
-.+|.+.++..+.+ +.+. ..++++..+ +.| -|+-+. |++....+++++.+.++..++.|- +
T Consensus 167 srfGi~~~~~~~~~-------~~~~~~~~l~l~Gl----h~H----~gs~~~-d~~~~~~~~~~~~~~~~~l~~~g~~l~ 230 (417)
T TIGR01048 167 SKFGIDVEEALEAY-------LYALQLPHLELVGI----HCH----IGSQIT-DLSPFVEAAEKVVDLVEELKAEGIDLE 230 (417)
T ss_pred CCCCCCHHHHHHHH-------HHHHhCCCCCEEEE----EEe----CCCCCC-ChHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34677776533222 2233 335776655 222 244332 677788888888888777766653 3
Q ss_pred eEEEccCCcCcCCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCceEEecc
Q 037393 251 NYVFWGGREGYQSLLN---TDMGREIDHMANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 251 ~~v~WgGrEGydy~~q---tD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
.+.+=|| -|..|... .|+.+.-+.+.+.++..+. .+.+.++.+||
T Consensus 231 ~idiGGG-~~~~y~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~l~~EP 278 (417)
T TIGR01048 231 FLDLGGG-LGIPYTPEEEPPDPEEYAQAILAALEGYAD----LGLDPKLILEP 278 (417)
T ss_pred EEEeCCc-cccccCCCCCCCCHHHHHHHHHHHHHHHHh----cCCCcEEEEcc
Confidence 4555444 35555433 3565555555555544332 23456888877
No 164
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=30.45 E-value=3e+02 Score=27.35 Aligned_cols=113 Identities=15% Similarity=0.123 Sum_probs=63.0
Q ss_pred HHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCCC---------------CCcc
Q 037393 153 ANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQLF---------------SHPR 216 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanlF---------------~~pr 216 (503)
.-++.+.+.|++.++||.--. .++.++.+.+++.- ..|+.+.-.||--. .+|-
T Consensus 72 ~~i~~~~~~gad~i~~H~Ea~-----------~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PG 140 (220)
T PRK08883 72 RIIPDFAKAGASMITFHVEAS-----------EHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPG 140 (220)
T ss_pred HHHHHHHHhCCCEEEEcccCc-----------ccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCC
Confidence 344689999999999997641 12333333445444 44554443333110 2455
Q ss_pred ccCCCCCCCCHHHHHHHHHHH----------------HHHHHHHHHhCCCeEEEccCCcCcCCCC-CCCHHHHHHHHHHH
Q 037393 217 YMHGAATSSEVAVYAYAAAQV----------------KKAMEVTHYLGGENYVFWGGREGYQSLL-NTDMGREIDHMANF 279 (503)
Q Consensus 217 fk~GA~TnPD~~VRa~Ai~~v----------------kraiDia~eLGa~~~v~WgGrEGydy~~-qtD~~~~~d~l~e~ 279 (503)
|.-..|....-+--++..+.. .+.+....+.|++.++.=++ .+ +.|+++.++++.+.
T Consensus 141 fgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSa------If~~~d~~~~i~~l~~~ 214 (220)
T PRK08883 141 FGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSA------IFGQPDYKAVIDEMRAE 214 (220)
T ss_pred CCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHH------HhCCCCHHHHHHHHHHH
Confidence 554445544433222222222 24556667789998887333 33 46888888888776
Q ss_pred HHH
Q 037393 280 FES 282 (503)
Q Consensus 280 l~~ 282 (503)
++.
T Consensus 215 ~~~ 217 (220)
T PRK08883 215 LAK 217 (220)
T ss_pred HHh
Confidence 543
No 165
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.41 E-value=6.1e+02 Score=25.94 Aligned_cols=96 Identities=16% Similarity=0.044 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHH--hcCCceeeeeccCCCCCccccCCCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKEL--QGTKVRPLWGTAQLFSHPRYMHGAATSSE 226 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l--~~tGvkl~~~tanlF~~prfk~GA~TnPD 226 (503)
.++...++.+.++||+++++--.=.-=+.-+.+|.+.-++-+.+.+++. .+.|+++..+ |-+..-.
T Consensus 41 ~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~~~~~~~~irir~i------------G~~~~Lp 108 (242)
T PRK14838 41 ETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEETFMKNNIRFRII------------GDIAKLP 108 (242)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHHHHHHHcCcEEEEE------------eChhhCC
Confidence 4677888999999999998732222234566677777777666666542 2789999998 6665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 227 VAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 227 ~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
+++++ .++++.+.++.-.+-.+.+-.+..|
T Consensus 109 ~~l~~----~i~~~e~~T~~~~~~~lnia~~Ygg 138 (242)
T PRK14838 109 EEVQE----RLNECEEHTAKNTGMCLVLALSYSS 138 (242)
T ss_pred HHHHH----HHHHHHHHhcCCCceEEEEeecCCC
Confidence 66653 4556667776554445555555443
No 166
>cd03679 MM_CoA_mutase_alpha_like Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, Alpha subunit-like subfamily; contains proteins similar to the alpha subunit of Propionbacterium shermanni MCM, as well as human and E. coli MCM. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In higher animals, MCM is involved in the breakdown of odd-chain fatty acids, several amino acids, and cholesterol. Methylobacterium extorquens MCM participates in the glyoxylate regeneration pathway. In M. extorquens, MCM forms a complex with
Probab=30.33 E-value=3.9e+02 Score=30.39 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=32.4
Q ss_pred cHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcC
Q 037393 313 DAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNG 357 (503)
Q Consensus 313 dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~g 357 (503)
.++.++.++.+. .|+---|+|+.-|.+=+|-|+++++++++..+
T Consensus 204 ~~~d~~~~~~~~-~p~~~~isv~g~~~~eAGAt~vQELA~tLA~~ 247 (536)
T cd03679 204 IIADIFAYTSKN-MPKFNSISISGYHMQEAGATADLELAYTLADG 247 (536)
T ss_pred HHHHHHHHHHhc-CCCceEEEEechhHhhCCCCHHHHHHHHHHHH
Confidence 445555555543 45544699999999999999999999876654
No 167
>PF15153 CYTL1: Cytokine-like protein 1
Probab=30.23 E-value=29 Score=32.37 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=9.9
Q ss_pred HHHHHhcCCCCccCc
Q 037393 43 SSLVIAGAPPTCAAN 57 (503)
Q Consensus 43 ~~~~~~~~~~~~~~~ 57 (503)
....+.++||||-.-
T Consensus 12 ~~~~A~~aPPTCYSR 26 (132)
T PF15153_consen 12 LPPLAQPAPPTCYSR 26 (132)
T ss_pred hhhhccCCCCcHHHH
Confidence 344667888888644
No 168
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=29.88 E-value=7.3e+02 Score=26.81 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCC--CCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCcccc
Q 037393 141 TNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPD--GETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYM 218 (503)
Q Consensus 141 ~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~--g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk 218 (503)
.||.|=|| .-.++.|++-++.|..--.|. +.+.+|.-+-+.+ .|++ |+|..+
T Consensus 150 edP~eWAr-------k~Vk~fgadmvTiHlIsTdPki~D~p~~EAak~lEd---vLqA-----VdvPii----------- 203 (403)
T COG2069 150 EDPGEWAR-------KCVKKFGADMVTIHLISTDPKIKDTPAKEAAKTLED---VLQA-----VDVPII----------- 203 (403)
T ss_pred hCHHHHHH-------HHHHHhCCceEEEEeecCCccccCCCHHHHHHHHHH---HHHh-----cCcCEE-----------
Confidence 46777777 456789999999998887884 4555665555554 3433 233322
Q ss_pred CCCCCCC--CHHHHHHHHHHH----------------HHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHH
Q 037393 219 HGAATSS--EVAVYAYAAAQV----------------KKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDH 275 (503)
Q Consensus 219 ~GA~TnP--D~~VRa~Ai~~v----------------kraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~ 275 (503)
-|+..|| ||.|.++|++-+ ++-.++|.+-| -++--|.--| .|+.+.++|
T Consensus 204 iGGSGnpeKDpeVlekaAEvaEGeRclLaSanldlDy~~ia~AA~ky~-H~VLswt~~D-------~N~qk~LNr 270 (403)
T COG2069 204 IGGSGNPEKDPEVLEKAAEVAEGERCLLASANLDLDYERIAEAALKYD-HVVLSWTQMD-------VNMQKTLNR 270 (403)
T ss_pred ecCCCCCccCHHHHHHHHHhhcCceEEeeccccccCHHHHHHHHHhcC-ceEEEeeccC-------hHHHHHHHH
Confidence 1444554 899999988754 45566676666 4555676544 555554443
No 169
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=29.85 E-value=1.6e+02 Score=27.65 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCCC--eEEEccCCcCcCCCCCCCHHH------HHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC
Q 037393 235 AQVKKAMEVTHYLGGE--NYVFWGGREGYQSLLNTDMGR------EIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT 306 (503)
Q Consensus 235 ~~vkraiDia~eLGa~--~~v~WgGrEGydy~~qtD~~~------~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~ 306 (503)
+.+..++..|.++|++ -+-+|...||--.......-. ..-.|.+.|+.+.++...-+.+..+.||-|+..+
T Consensus 13 eNT~~af~~a~~~G~~~iE~DV~lt~Dg~lvv~HD~~~~r~~~~~~~ptl~evl~~~~~~~~~~~~~~~l~iEiK~~~~- 91 (179)
T cd08555 13 ENTLEAFYRALDAGARGLELDVRLTKDGELVVYHGPTLDRTTAGILPPTLEEVLELIADYLKNPDYTIILSLEIKQDSP- 91 (179)
T ss_pred ccHHHHHHHHHHcCCCEEEEEEeEcCCCeEEEECCCccccccCCCCCCCHHHHHHHHHhhhhcCCCceEEEEEeCCCCC-
Confidence 6677888899999998 456788888865555444322 3345666666666554322345689999997543
Q ss_pred CCCccccHHHHHHHHHHhC
Q 037393 307 KHQYDWDAATAANFLRKYG 325 (503)
Q Consensus 307 ~h~y~~dvgt~l~fl~~~g 325 (503)
.+..-....+..+++++
T Consensus 92 --~~~~~~~~~~~~~~~~~ 108 (179)
T cd08555 92 --EYDEFLAKVLKELRVYF 108 (179)
T ss_pred --cchHHHHHHHHHHHHcC
Confidence 33344567777788887
No 170
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.69 E-value=6.4e+02 Score=25.96 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHH----HhcCCceeeeeccCCCCCccccCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKE----LQGTKVRPLWGTAQLFSHPRYMHGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~----l~~tGvkl~~~tanlF~~prfk~GA~TnP 225 (503)
++...++.+.++||+++++--.=.--+.-+.+|.+.-++-+.+.+++ +.+.|+++..+ |-+..-
T Consensus 54 ~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i------------Gd~~~L 121 (250)
T PRK14840 54 SLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQLDSQLPYLHENEIRLRCI------------GDLSKL 121 (250)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE------------eChhhC
Confidence 66677889999999999873222222455667776655544444333 33789999998 666665
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHH
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAY 286 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dy 286 (503)
.++|+ ..++++.+.++.-.+-.+.+-....|- +-++++.+.++.-
T Consensus 122 p~~l~----~~i~~~e~~T~~~~~~~Lnla~~Yggr------------~EI~~A~~~~~~~ 166 (250)
T PRK14840 122 PQELQ----NNIEQASSATAHYSRMELVLAINYGGK------------DELVRAFKKLHQD 166 (250)
T ss_pred CHHHH----HHHHHHHHHhccCCceEEEEEecCCcH------------HHHHHHHHHHHHH
Confidence 66665 345667777777766677777665552 2345666666543
No 171
>PF13999 MarB: MarB protein
Probab=29.56 E-value=1.2e+02 Score=25.43 Aligned_cols=57 Identities=21% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCccCcccCccCCcccc----ccccCCCCCcccccCCCCCCCccccccCc
Q 037393 37 LCLNLVSSLVIAGAPPTCAANLDSKCADSDEW----KGEFFPGIPKIKYEGPSSKNHLAFKWYNP 97 (503)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~f~~i~~i~yeg~~s~n~~~f~~y~~ 97 (503)
+.|+++.++-..|.+.|||+. ..|.|-.-. ...=|. +... =.|.+..+-|.--|||-
T Consensus 5 ~~LL~L~SGqs~AEQTt~p~~--~~~~d~~i~p~~~~~sp~D-~nhm-~agSDKSDeLGVpYyN~ 65 (66)
T PF13999_consen 5 LALLLLFSGQSFAEQTTQPVV--QNCRDVMIVPSSHEQSPFD-FNHM-GAGSDKSDELGVPYYNQ 65 (66)
T ss_pred HHHHHHHhhhhhhhccCCccc--cCCCceEEecCcCCCCCcc-cccc-cCCCCcccccCCccccC
Confidence 334444556888999999998 778765421 111111 1111 02444457777777773
No 172
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=29.51 E-value=2.9e+02 Score=28.91 Aligned_cols=131 Identities=15% Similarity=0.045 Sum_probs=85.1
Q ss_pred chhcCCccccccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCC
Q 037393 99 EVILGKKMKDWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGE 178 (503)
Q Consensus 99 ~~i~gk~m~~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~ 178 (503)
+.+.+-+|-.| |+| .-+|.-.|-.--..-+|.. =++--.++-..++.+-++||+++++--.-+--+.-
T Consensus 29 ~~~~~g~~P~H----VaF----IMDGNRR~AKk~~L~~~~G----H~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkR 96 (271)
T KOG1602|consen 29 RLLARGPMPRH----VAF----IMDGNRRYAKKRGLETSEG----HEAGFEALKEILELCKELGIKEVTVFAFSIENFKR 96 (271)
T ss_pred HHHhcCCCcce----eEE----EecCchHHHHhcCCCcccc----hHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCC
Confidence 35666677787 333 3466655543333223322 22333456667789999999998885555556777
Q ss_pred CHHHHHHhHHHHHHHHHHHh-------cCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Q 037393 179 TLKEANANLDEVVALAKELQ-------GTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGEN 251 (503)
Q Consensus 179 t~~e~~~nl~~i~~~lk~l~-------~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~ 251 (503)
+..|.+.-++-+.+.++++. ..||++..+ |-++--++++|+. +++++++++.--.-.
T Consensus 97 s~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririi------------GdlslL~~~l~k~----i~~ieE~Tknn~~~~ 160 (271)
T KOG1602|consen 97 SPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVI------------GDLSLLPESLRKA----IKKIEEATKNNTRLI 160 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEE------------cchhhCCHHHHHH----HHHHHHHhhcCCceE
Confidence 88888777766666666544 378888777 7788888888864 567788888765555
Q ss_pred EEEccC
Q 037393 252 YVFWGG 257 (503)
Q Consensus 252 ~v~WgG 257 (503)
+.+-.+
T Consensus 161 L~vcf~ 166 (271)
T KOG1602|consen 161 LNVCFA 166 (271)
T ss_pred EEEEec
Confidence 555444
No 173
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=29.49 E-value=1.7e+02 Score=28.20 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEccC
Q 037393 235 AQVKKAMEVTHYLGGENYVFWGG 257 (503)
Q Consensus 235 ~~vkraiDia~eLGa~~~v~WgG 257 (503)
+++.++.+++.++|++.+..=.|
T Consensus 131 ~~i~~a~ria~e~GaD~IKTsTG 153 (203)
T cd00959 131 EEIIKACEIAIEAGADFIKTSTG 153 (203)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCC
Confidence 57889999999999998887544
No 174
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=29.20 E-value=4.9e+02 Score=26.96 Aligned_cols=114 Identities=12% Similarity=0.258 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh--cCCceeeeeccCCCCCccccCC
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ--GTKVRPLWGTAQLFSHPRYMHG 220 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~--~tGvkl~~~tanlF~~prfk~G 220 (503)
-+|.+...+-+-++++++||+.-|.||--- .-+.+-+|--.++.+ .+..-. -.+|.++.- |+-. -|
T Consensus 84 k~eks~~~~vDdl~Rce~LGIgmYN~HPGS--t~~~~kee~l~~ia~---~in~a~eetk~V~ivlE--nMAG-----qG 151 (281)
T KOG3997|consen 84 KLEKSRECFVDDLQRCEKLGIGMYNFHPGS--TVGKEKEECLTTIAE---TINFAVEETKNVIIVLE--NMAG-----QG 151 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhCceeeecCCCc--cccccHHHHHHHHHH---HHHHHHHhccceEEEee--cccC-----CC
Confidence 577777777788899999999999999222 123344555555555 443333 445555443 2222 24
Q ss_pred CCCCCCHHHHHHHHHHHH------HHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHH
Q 037393 221 AATSSEVAVYAYAAAQVK------KAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMAN 278 (503)
Q Consensus 221 A~TnPD~~VRa~Ai~~vk------raiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e 278 (503)
...-...+-.+.-+..+| -|+|.|+-.+| |||-.-+..|.+.|++|-+
T Consensus 152 n~vG~tfeelk~ii~~Ikdk~RigVClDTCH~Faa----------GyDI~Tee~y~evmkeFde 205 (281)
T KOG3997|consen 152 NSVGGTFEELKFIIGKIKDKSRIGVCLDTCHTFAA----------GYDIRTEEAYEEVMKEFDE 205 (281)
T ss_pred CcccccHHHHHHHHHhhcchhhheeeHhhhhhhcc----------ccccchHHHHHHHHHHHHH
Confidence 444444555555555554 47888887774 7886666666666665544
No 175
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=29.14 E-value=5.1e+02 Score=26.80 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCC---CCHHH-HHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCC
Q 037393 231 AYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLN---TDMGR-EIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPT 306 (503)
Q Consensus 231 a~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~q---tD~~~-~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~ 306 (503)
..-.+.+.+-++.++++|...+.|=+| +.-++.+. .++.. -...+.+.++.+++...+.|. ...+.|+.
T Consensus 40 ~ls~eei~~~~~~~~~~G~~ei~l~gG-~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~--~~~~~~~~---- 112 (336)
T PRK06245 40 LLSPEEVKEILRRGADAGCTEALFTFG-EVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGL--LPHTNAGI---- 112 (336)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecC-CCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCC--CccccCCC----
Confidence 456677777788888999999777777 42111111 11100 013455666666666555443 22222221
Q ss_pred CCCccccHHHHHHHHHHhCCCCCceeeccccccc--------ccCCCHHHHHHHHHHcCC
Q 037393 307 KHQYDWDAATAANFLRKYGLINDFKLNIECNHAT--------LSGHSCHHDIETARLNGL 358 (503)
Q Consensus 307 ~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~--------lAG~n~ah~va~A~~~gk 358 (503)
-....+..+++.|. .+++++|.+... ..++++...+.......+
T Consensus 113 ------lt~e~i~~Lk~ag~--~l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~ 164 (336)
T PRK06245 113 ------LTREEMEKLKEVNA--SMGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGK 164 (336)
T ss_pred ------CCHHHHHHHHHhCC--CCCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHH
Confidence 23344567777773 378888887533 357777776666555544
No 176
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=28.94 E-value=1.7e+02 Score=27.79 Aligned_cols=79 Identities=10% Similarity=0.111 Sum_probs=53.8
Q ss_pred HHHHHhCCceecccCCC----CCC-CCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHH
Q 037393 156 EFIDKLGVDFWCFHDRD----IAP-DGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVY 230 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~D----l~P-~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VR 230 (503)
+.|.+.|++-+-++-.. +.+ .+.+.+++.+++.++.+..+.+.+.|+.+..- +++|.+++|
T Consensus 24 ~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva--------------~isp~~~~R 89 (156)
T PF01583_consen 24 RRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA--------------FISPYREDR 89 (156)
T ss_dssp HHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE------------------SHHHH
T ss_pred HHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe--------------eccCchHHH
Confidence 56788898887772111 111 36788999999999998887777999987764 689999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEccC
Q 037393 231 AYAAAQVKKAMEVTHYLGGENYVFWGG 257 (503)
Q Consensus 231 a~Ai~~vkraiDia~eLGa~~~v~WgG 257 (503)
+.+-+.+... +.+.+|..
T Consensus 90 ~~~R~~~~~~---------~f~eVyv~ 107 (156)
T PF01583_consen 90 EWARELIPNE---------RFIEVYVD 107 (156)
T ss_dssp HHHHHHHHTT---------EEEEEEEE
T ss_pred HHHHHhCCcC---------ceEEEEeC
Confidence 9888776642 67777776
No 177
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=28.49 E-value=3.8e+02 Score=31.41 Aligned_cols=16 Identities=6% Similarity=-0.050 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCceecc
Q 037393 153 ANFEFIDKLGVDFWCF 168 (503)
Q Consensus 153 ~afe~l~kLG~~~~~f 168 (503)
.|+..|++.|++..-|
T Consensus 123 ~A~PILkkygvpATfF 138 (671)
T PRK14582 123 RVFPILQAFQWPAVWA 138 (671)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 3678999999998755
No 178
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=28.42 E-value=4.6e+02 Score=32.89 Aligned_cols=185 Identities=13% Similarity=0.063 Sum_probs=89.9
Q ss_pred HHHHHhcCCceeeeeccCCCCCccccCCCCCCCC--HHHHHHHHHHHHHHHHHHHH--hCCCeEEE----------ccCC
Q 037393 193 LAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSE--VAVYAYAAAQVKKAMEVTHY--LGGENYVF----------WGGR 258 (503)
Q Consensus 193 ~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD--~~VRa~Ai~~vkraiDia~e--LGa~~~v~----------WgGr 258 (503)
.-++..+.|-. -+++|.|+-.+.+.+...-.+ .++-..|+..+++|.+-... -|.+.+|. ..+
T Consensus 70 IH~~Yl~AGAD--II~TNTF~a~~~~L~~ygl~~~~~eln~~av~LAreAa~~~~~~~~~~~~~VAGSIGP~g~~~sl~- 146 (1229)
T PRK09490 70 IHRAYLEAGAD--IIETNTFNATTIAQADYGMESLVYELNFAAARLAREAADEWTAKTPDKPRFVAGVLGPTNRTASIS- 146 (1229)
T ss_pred HHHHHHHHhCc--eeecCCCCCCHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhccCCCceEEEEecCCCCcccccC-
Confidence 44555577766 566888986666655432221 34444555556665554211 01122211 111
Q ss_pred cCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHh------CCCCCc
Q 037393 259 EGYQSLL--NTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKY------GLINDF 330 (503)
Q Consensus 259 EGydy~~--qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~------gl~~~~ 330 (503)
.|.+++. +.++.+..+.+.+-++.++ +-|.+ -|+||-=|.- -.+-.++..++++ ++|=.+
T Consensus 147 p~~e~pg~~~it~del~~~y~eQi~~L~----e~GVD-llliETi~d~-------~EakAal~a~~~~~~~~~~~lPv~v 214 (1229)
T PRK09490 147 PDVNDPGFRNVTFDELVAAYREQTRGLI----EGGAD-LILIETIFDT-------LNAKAAIFAVEEVFEELGVRLPVMI 214 (1229)
T ss_pred CCcccccccCCCHHHHHHHHHHHHHHHH----hCCCC-EEEEeeeCCH-------HHHHHHHHHHHHHHhhcCCCCeEEE
Confidence 2223322 3455555555555544444 34554 4566632211 0122333333433 344445
Q ss_pred eeec-c-cccccccCCCHHHHHHH---------------------------HHHcCCeeEEecCCCCCCCCCCCCCCcCC
Q 037393 331 KLNI-E-CNHATLSGHSCHHDIET---------------------------ARLNGLLGNIDANTGDPQVGWDTDQFLTD 381 (503)
Q Consensus 331 gVni-D-~gHa~lAG~n~ah~va~---------------------------A~~~gkLg~ihlNdg~~q~Gwd~Dqf~~~ 381 (503)
.+++ | .|+ ++.|.+++..+.. +...+...+++-|-|-++. .+.+..+
T Consensus 215 S~T~~d~~Gr-~lsG~~~ea~~~~l~~~~~~avGlNCs~GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~---~~~yd~t 290 (1229)
T PRK09490 215 SGTITDASGR-TLSGQTTEAFWNSLRHAKPLSIGLNCALGADELRPYVEELSRIADTYVSAHPNAGLPNA---FGEYDET 290 (1229)
T ss_pred EEEEECCCCc-cCCCCcHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHHhcCCeEEEEeCCCCCCC---CCCCCCC
Confidence 5555 2 354 4555444433222 1233567788888876543 2234446
Q ss_pred HHHHHHHHHHHHHhC
Q 037393 382 IGEATSIMLSVIKNG 396 (503)
Q Consensus 382 ~~e~~~~m~~iLk~g 396 (503)
+.+....+.++++.|
T Consensus 291 Pe~~a~~~~~~~~~G 305 (1229)
T PRK09490 291 PEEMAAQIGEFAESG 305 (1229)
T ss_pred HHHHHHHHHHHHHcC
Confidence 777777777777776
No 179
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=28.34 E-value=1.6e+02 Score=30.03 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred cccceeeeeccccCCC-------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCC
Q 037393 108 DWMRFSVAFWHTFRGT-------------GSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIA 174 (503)
Q Consensus 108 ~~lrFsv~~Wht~~~~-------------g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~ 174 (503)
|-+||+.|-| ++... |..++=+||. =-.-.++.++++-++.+++||++.+++-+--
T Consensus 26 D~lKfg~Gt~-~l~~~~~l~eki~la~~~~V~v~~GGtl--------~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~-- 94 (237)
T TIGR03849 26 TFVKFGWGTS-ALIDRDIVKEKIEMYKDYGIKVYPGGTL--------FEIAHSKGKFDEYLNECDELGFEAVEISDGS-- 94 (237)
T ss_pred eeEEecCceE-eeccHHHHHHHHHHHHHcCCeEeCCccH--------HHHHHHhhhHHHHHHHHHHcCCCEEEEcCCc--
Q ss_pred CCCCCHHHHHHhHHHHHHH-HHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEE
Q 037393 175 PDGETLKEANANLDEVVAL-AKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYV 253 (503)
Q Consensus 175 P~g~t~~e~~~nl~~i~~~-lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v 253 (503)
..-+.++..+-++.+.+. ++.+-+.|+|- +.++. +....+..+-++-.-+.||+.+.
T Consensus 95 -~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~--------------------~~~~~-~~~~~~~i~~~~~~LeAGA~~Vi 152 (237)
T TIGR03849 95 -MEISLEERCNLIERAKDNGFMVLSEVGKKS--------------------PEKDS-ELTPDDRIKLINKDLEAGADYVI 152 (237)
T ss_pred -cCCCHHHHHHHHHHHHhCCCeEeccccccC--------------------Ccccc-cCCHHHHHHHHHHHHHCCCcEEE
Q ss_pred E
Q 037393 254 F 254 (503)
Q Consensus 254 ~ 254 (503)
+
T Consensus 153 i 153 (237)
T TIGR03849 153 I 153 (237)
T ss_pred E
No 180
>PLN02998 beta-glucosidase
Probab=28.28 E-value=76 Score=35.40 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=58.5
Q ss_pred cccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceecc
Q 037393 91 AFKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCF 168 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~f 168 (503)
.|++|-.|-..+ |.|. .+.|||+++ --+-. -|.+. + | +.+-+.=+..|+.|.+.|+ +.||+
T Consensus 80 ~Yhry~EDi~lm-k~lG~~~YRfSIsW-sRI~P-----~G~g~----v----N--~~gl~~Y~~lid~L~~~GIeP~VTL 142 (497)
T PLN02998 80 QYHKYKEDVKLM-ADMGLEAYRFSISW-SRLLP-----SGRGP----I----N--PKGLQYYNNLIDELITHGIQPHVTL 142 (497)
T ss_pred HHHhhHHHHHHH-HHcCCCeEEeeccH-HhcCc-----CCCCC----c----C--HHHHHHHHHHHHHHHHcCCceEEEe
Confidence 466666555444 3443 678999986 23332 23221 2 1 2222345567789999998 69999
Q ss_pred cCCCCCCCCCCHH----HHHHhHHHHHHHHHHHh-cCCcee-eeec
Q 037393 169 HDRDIAPDGETLK----EANANLDEVVALAKELQ-GTKVRP-LWGT 208 (503)
Q Consensus 169 HD~Dl~P~g~t~~----e~~~nl~~i~~~lk~l~-~tGvkl-~~~t 208 (503)
||-|+ |..-..+ .+.+.++..+++.+.+. ..|=+| .|+|
T Consensus 143 ~H~dl-P~~L~~~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk~WiT 187 (497)
T PLN02998 143 HHFDL-PQALEDEYGGWLSQEIVRDFTAYADTCFKEFGDRVSHWTT 187 (497)
T ss_pred cCCCC-CHHHHHhhCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 99995 7432111 22345566666777666 555433 6887
No 181
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=27.99 E-value=8.7e+02 Score=27.01 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=67.3
Q ss_pred CCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccC
Q 037393 178 ETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGG 257 (503)
Q Consensus 178 ~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgG 257 (503)
.+++++-+..+.+=+.++...+.||.+.- ..|. | +.|-++.| .-+-|++.+..+ +++++|-+.++|--+
T Consensus 140 ~~Le~si~~wqy~~rl~~~y~e~gv~in~---E~fg-~--l~~~l~pp---tla~aiaylea~--la~glgV~~lS~~f~ 208 (428)
T cd00245 140 VPLEKSIENWQYCDRLVGFYEENGVPINR---EPFG-P--LTGTLVPP---SILIAIQILEAL--LAAEQGVKSISVGYA 208 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceecc---cCCc-C--cccCcCCc---HHHHHHHHHHHH--HHccCCCCEEEEEee
Confidence 37888888875444455666688988652 2222 1 34444444 555588888777 667899999988555
Q ss_pred CcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 037393 258 REGYQSLLNTDMGREIDHMANFFESAAAYKKKIGF 292 (503)
Q Consensus 258 rEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~ 292 (503)
-+.|+.++..-+..+=++...|.++.|+
T Consensus 209 -------~~~n~~qDIAk~RA~RrL~a~~l~efG~ 236 (428)
T cd00245 209 -------QQGNLTQDIAALRALRELAKEYLPKYGY 236 (428)
T ss_pred -------cCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4578999998888888888888777555
No 182
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=27.66 E-value=3.8e+02 Score=27.06 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCeEEEccCCcCcCCCCC--CCHHHHHHHHHHHHHHH
Q 037393 239 KAMEVTHYLGGENYVFWGGREGYQSLLN--TDMGREIDHMANFFESA 283 (503)
Q Consensus 239 raiDia~eLGa~~~v~WgGrEGydy~~q--tD~~~~~d~l~e~l~~v 283 (503)
+.+....+.|++.+|. |.-+.|+ .|+++.++.+.+.++.+
T Consensus 181 ~~i~~~~~aGad~~V~-----Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 181 KTYEKLMEAGADVFIV-----GTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred HHHHHHHHcCCCEEEE-----ChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 4556677889998887 2222553 57998888887655444
No 183
>cd06830 PLPDE_III_ADC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase. This subfamily includes plants and biosynthetic prokaryotic arginine decarboxylases (ADC, EC 4.1.1.19). ADC is involved in the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. It catalyzes the decarboxylation of L-arginine to agmatine, which is then hydrolyzed to putrescine by agmatinase. ADC is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Homodimer formation and the presence of both PLP and Mg2+ cofactors may be required for catalytic activity. Prokaryotic ADCs (biodegradative), which are fold type I PLP-dependent enzymes, are not included in this family.
Probab=27.32 E-value=4e+02 Score=28.62 Aligned_cols=127 Identities=18% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcC--
Q 037393 280 FESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNG-- 357 (503)
Q Consensus 280 l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~g-- 357 (503)
|+.+.+.+++.+...+++|=-+|.....|..+-+.+ .+..||+.+| ...+.+..+...|
T Consensus 124 L~~l~~~a~~~~~~~~v~lRinp~~~~~~~~~~~~~----------~~sKFGi~~~---------~~~~~~~~~~~~~~~ 184 (409)
T cd06830 124 LDLILELAKKLGVKPLLGVRIKLASKGSGKWQESGG----------DRSKFGLTAS---------EILEVVEKLKEAGML 184 (409)
T ss_pred HHHHHHHHHHcCCCceEEEEEccCCCCCcceeccCC----------CCCCCCCCHH---------HHHHHHHHHHhcCcC
Q ss_pred -CeeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhC--------CCCCCcccccccCc------CCCCChHHHHHH
Q 037393 358 -LLGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNG--------GLAPGGFNFDAKLR------RESTDVEDLFIA 422 (503)
Q Consensus 358 -kLg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~g--------G~~~Ggi~FDakpr------R~s~d~edl~~a 422 (503)
+|.++|+--| -.--|.+.+...+..+..++..+-+.| | ||+.-+.... -...|.++....
T Consensus 185 l~l~GlH~H~G--Sq~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~iDiG---GGf~v~y~~~~~~~~~~~~~d~~~~~~~ 259 (409)
T cd06830 185 DRLKLLHFHIG--SQITDIRRIKSALREAARIYAELRKLGANLRYLDIG---GGLGVDYDGSRSSSDSSFNYSLEEYAND 259 (409)
T ss_pred CeEEEEEEecC--CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEcC---CCcccCCCCCcCcccCCCCCCHHHHHHH
Q ss_pred HHHHHHHH
Q 037393 423 HIVGMDTV 430 (503)
Q Consensus 423 ~i~~md~~ 430 (503)
....++.+
T Consensus 260 i~~~l~~~ 267 (409)
T cd06830 260 IVKTVKEI 267 (409)
T ss_pred HHHHHHHH
No 184
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=27.22 E-value=1.1e+02 Score=34.01 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=56.1
Q ss_pred cccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceecc
Q 037393 91 AFKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCF 168 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~f 168 (503)
.|+.|-.|=..+ |.|. ++.|||+++ --+-.. |.+. .+.+.+-+-=+.-|+.|.+-|+ +.||+
T Consensus 71 ~Yhry~eDi~Lm-~~lG~~aYRfSIsW-sRI~P~-----G~~~---------~~N~~gl~~Y~~lId~L~~~GI~P~VTL 134 (478)
T PRK09593 71 MYHHYKEDIALF-AEMGFKTYRMSIAW-TRIFPK-----GDEL---------EPNEAGLQFYEDIFKECHKYGIEPLVTI 134 (478)
T ss_pred hHHhhHHHHHHH-HHcCCCEEEEecch-hhcccC-----CCCC---------CCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 466665554443 4443 688999986 222222 2111 1122222345566778999998 79999
Q ss_pred cCCCCCCCC-----CCHHHHHHhHHHHHHHHHHHh-cCCcee-eeeccC
Q 037393 169 HDRDIAPDG-----ETLKEANANLDEVVALAKELQ-GTKVRP-LWGTAQ 210 (503)
Q Consensus 169 HD~Dl~P~g-----~t~~e~~~nl~~i~~~lk~l~-~tGvkl-~~~tan 210 (503)
||-|+ |.- -.+. +.+.++..+++.+-+. ..|=+| .|+|-|
T Consensus 135 ~H~dl-P~~L~~~~GGW~-n~~~v~~F~~YA~~~~~~fgdrVk~WiT~N 181 (478)
T PRK09593 135 THFDC-PMHLIEEYGGWR-NRKMVGFYERLCRTLFTRYKGLVKYWLTFN 181 (478)
T ss_pred cccCC-CHHHHhhcCCCC-ChHHHHHHHHHHHHHHHHhcCcCCEEEeec
Confidence 99984 521 1111 1234455555666655 555433 687733
No 185
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=27.02 E-value=5.1e+02 Score=25.67 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh------cCCceeeeeccCCCCCccccCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ------GTKVRPLWGTAQLFSHPRYMHGAA 222 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~------~tGvkl~~~tanlF~~prfk~GA~ 222 (503)
.++....+.+.++||+++++--.-.-=+.-+.+|.+.-++-+.+.++++. +.|++|.++ |..
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~i------------Gd~ 92 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVI------------GDL 92 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEE------------S-G
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEE------------ecc
Confidence 36677888999999999887322211234556676666655544444433 579999998 666
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 037393 223 TSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKK 289 (503)
Q Consensus 223 TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~ 289 (503)
+.-.+++++ .+.++.+.++.=.+-.+++=.+..| .+.++++.+.+++...+
T Consensus 93 ~~Lp~~~~~----~i~~~e~~T~~n~~l~Lnia~~Ygg------------r~eI~~a~~~~~~~~~~ 143 (223)
T PF01255_consen 93 SLLPEELQK----AIAEAEEKTKNNTGLTLNIAINYGG------------RDEIVDAARKLAEEVQS 143 (223)
T ss_dssp GGS-HHHHH----HHHHHHHHHTTSSSEEEEEEECE-H------------HHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHH----HHHHHHHhhccCcceeEEEEecCCc------------HHHHHHHHHHhhhhhcc
Confidence 555566654 3445555665444444555554333 44566677777765443
No 186
>cd06842 PLPDE_III_Y4yA_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Y4yA. This subfamily is composed of the hypothetical Rhizobium sp. protein Y4yA and similar uncharacterized bacterial proteins. These proteins are homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarboxylases.
Probab=26.96 E-value=7.4e+02 Score=26.71 Aligned_cols=124 Identities=19% Similarity=0.220 Sum_probs=70.4
Q ss_pred cCccCCccccccccCCCC--CcccccCCCCC-C--------CccccccCccchh---------cCCccccccceeeeecc
Q 037393 59 DSKCADSDEWKGEFFPGI--PKIKYEGPSSK-N--------HLAFKWYNPEEVI---------LGKKMKDWMRFSVAFWH 118 (503)
Q Consensus 59 ~~~~~~~~~~~~~~f~~i--~~i~yeg~~s~-n--------~~~f~~y~~~~~i---------~gk~m~~~lrFsv~~Wh 118 (503)
+..|.+..|-..-.=.++ ++|-|.|+... . -+.+--=|.+|+- .|++.+=+||...+..
T Consensus 62 g~dvaS~~E~~~~~~~G~~~~~I~~~g~~k~~~~i~~a~~~gi~i~vDs~~el~~l~~~a~~~~~~~~~v~lRIn~~~~- 140 (423)
T cd06842 62 GVDVASLAELRQALAAGVRGDRIVATGPAKTDEFLWLAVRHGATIAVDSLDELDRLLALARGYTTGPARVLLRLSPFPA- 140 (423)
T ss_pred CEEECCHHHHHHHHHCCCCCCeEEEECCCCCHHHHHHHHhCCCEEEECCHHHHHHHHHHHHhcCCCCCEEEEEEeCCCC-
Confidence 456666665544222234 36889988733 1 1233334555531 4567777888877652
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh--C--CceecccCCCCCCCCCCHHHHHHhHHHHHHHH
Q 037393 119 TFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKL--G--VDFWCFHDRDIAPDGETLKEANANLDEVVALA 194 (503)
Q Consensus 119 t~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kL--G--~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~l 194 (503)
.+...||-. .+.+ .+.++.++++ | +.++.+|-..- +.++..+.++.+.+.+
T Consensus 141 ----~~~sRfGi~------------~~e~----~~~~~~i~~~~~~l~l~Glh~H~gs~-----~~~~~~~~~~~~~~~~ 195 (423)
T cd06842 141 ----SLPSRFGMP------------AAEV----RTALERLAQLRERVRLVGFHFHLDGY-----SAAQRVAALQECLPLI 195 (423)
T ss_pred ----CCCCCCCCC------------HHHH----HHHHHHHHhcCCCCeEEEEEEEcCCC-----CHHHHHHHHHHHHHHH
Confidence 344556631 1212 2233456665 5 45666676551 5666777778777777
Q ss_pred HHHhcCCceeeeec
Q 037393 195 KELQGTKVRPLWGT 208 (503)
Q Consensus 195 k~l~~tGvkl~~~t 208 (503)
+++.+.|+.+.+++
T Consensus 196 ~~l~~~g~~~~~id 209 (423)
T cd06842 196 DRARALGLAPRFID 209 (423)
T ss_pred HHHHhcCCCCCEEE
Confidence 77766677776664
No 187
>PRK01060 endonuclease IV; Provisional
Probab=26.65 E-value=2.8e+02 Score=27.39 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh--cCCceeeeec
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ--GTKVRPLWGT 208 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~--~tGvkl~~~t 208 (503)
.+.+..++..++++.++||++++.+|-.... ...+.+ +.++.+++.++++. ..||++..-|
T Consensus 84 r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~-~~~~~~---~~~~~~~e~l~~l~~~~~gv~l~iEn 146 (281)
T PRK01060 84 LEKSRDFLIQEIERCAALGAKLLVFHPGSHL-GDIDEE---DCLARIAESLNEALDKTQGVTIVLEN 146 (281)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcCCcCC-CCCcHH---HHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 4556678889999999999999999865422 222222 23444445666553 5688777664
No 188
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=26.60 E-value=2e+02 Score=30.49 Aligned_cols=61 Identities=16% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 237 VKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 237 vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
.++.++.+.+.|.+.+.+...-- +.-.+..+++-.++..+.+..+++++++.|....+.+|
T Consensus 73 ~~~di~~a~~~g~~~i~i~~~~S--d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e 133 (363)
T TIGR02090 73 LKKDIDKAIDCGVDSIHTFIATS--PIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE 133 (363)
T ss_pred CHHHHHHHHHcCcCEEEEEEcCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 35668888888998887766521 11111122223344455566666777888988888887
No 189
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=26.55 E-value=4.6e+02 Score=26.21 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred HHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCC---------------CCCccc
Q 037393 154 NFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQL---------------FSHPRY 217 (503)
Q Consensus 154 afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanl---------------F~~prf 217 (503)
-++.+.+.|++.++||.--. .++.++.+.++++- ..||.+.-.|+-= --+|-|
T Consensus 77 ~i~~~~~~gad~I~~H~Ea~-----------~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf 145 (223)
T PRK08745 77 IVPDFADAGATTISFHPEAS-----------RHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGF 145 (223)
T ss_pred HHHHHHHhCCCEEEEcccCc-----------ccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCC
Confidence 34689999999999997641 12333334555555 5666655444320 124666
Q ss_pred cCCCCCCCC-HHHHHHHHH---------------HHHHHHHHHHHhCCCeEEEccCCcCcCCCC-CCCHHHHHHHHHHHH
Q 037393 218 MHGAATSSE-VAVYAYAAA---------------QVKKAMEVTHYLGGENYVFWGGREGYQSLL-NTDMGREIDHMANFF 280 (503)
Q Consensus 218 k~GA~TnPD-~~VRa~Ai~---------------~vkraiDia~eLGa~~~v~WgGrEGydy~~-qtD~~~~~d~l~e~l 280 (503)
.-..|.... .++++.... -..+.+...++.|++.+|. |+- .| +.|+++.++.+.+.+
T Consensus 146 ~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~--GSa----iF~~~d~~~~~~~lr~~~ 219 (223)
T PRK08745 146 GGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVA--GSA----IFNAPDYAQVIAQMRAAV 219 (223)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEE--Chh----hhCCCCHHHHHHHHHHHH
Confidence 655555422 233322211 1135666778899998887 322 44 457888888777654
Q ss_pred H
Q 037393 281 E 281 (503)
Q Consensus 281 ~ 281 (503)
.
T Consensus 220 ~ 220 (223)
T PRK08745 220 A 220 (223)
T ss_pred H
Confidence 3
No 190
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=26.16 E-value=3.7e+02 Score=25.07 Aligned_cols=91 Identities=9% Similarity=0.093 Sum_probs=49.8
Q ss_pred CCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE-ccCCcCcCCCCCCCHHHHHHHHHH
Q 037393 200 TKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVF-WGGREGYQSLLNTDMGREIDHMAN 278 (503)
Q Consensus 200 tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~-WgGrEGydy~~qtD~~~~~d~l~e 278 (503)
.|+++.-.--+--....+ ..-.+++.|+.-++.+ ++..++-|-+.+.+ | +++...+- ..++++.+
T Consensus 63 ~g~kv~~sigg~~~~~~~----~~~~~~~~~~~f~~~~---~~~v~~~~~DGidiD~------E~~~~~~~-~~~~~~~~ 128 (210)
T cd00598 63 PGLKVLISIGGWTDSSPF----TLASDPASRAAFANSL---VSFLKTYGFDGVDIDW------EYPGAADN-SDRENFIT 128 (210)
T ss_pred CCCEEEEEEcCCCCCCCc----hhhcCHHHHHHHHHHH---HHHHHHcCCCceEEee------eCCCCcCc-cHHHHHHH
Confidence 488876553321111111 2234555555544444 55666666665555 2 12222211 35678888
Q ss_pred HHHHHHHHHHhcCCCceEEeccCCCC
Q 037393 279 FFESAAAYKKKIGFKGNLLIEPKPQE 304 (503)
Q Consensus 279 ~l~~v~dya~~iG~~~~~~IEPKP~E 304 (503)
+++++.+.-++.++...+++.+.|..
T Consensus 129 ll~~lr~~l~~~~~~ls~a~~~~~~~ 154 (210)
T cd00598 129 LLRELRSALGAANYLLTIAVPASYFD 154 (210)
T ss_pred HHHHHHHHhcccCcEEEEEecCChHH
Confidence 99998888776677566666666543
No 191
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=26.08 E-value=4.3e+02 Score=29.98 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=41.9
Q ss_pred HHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHH
Q 037393 157 FIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQ 236 (503)
Q Consensus 157 ~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~ 236 (503)
++..+|+..+.-++ +... +..+..+++....|..+.. -.||++++.|+..
T Consensus 389 l~~~~g~~~vn~D~---------lg~~----~~~~~~a~~~L~~G~sVVI--------------DaTn~~~~~R~~~--- 438 (526)
T TIGR01663 389 FFQPAGYKHVNADT---------LGST----QNCLTACERALDQGKRCAI--------------DNTNPDAASRAKF--- 438 (526)
T ss_pred HHHHcCCeEECcHH---------HHHH----HHHHHHHHHHHhCCCcEEE--------------ECCCCCHHHHHHH---
Confidence 56667877763321 1222 2233344555566666555 3588888888665
Q ss_pred HHHHHHHHHHhCCCeEEEccC
Q 037393 237 VKKAMEVTHYLGGENYVFWGG 257 (503)
Q Consensus 237 vkraiDia~eLGa~~~v~WgG 257 (503)
+++|++.|.+...+|.-
T Consensus 439 ----i~lAk~~gv~v~~i~~~ 455 (526)
T TIGR01663 439 ----LQCARAAGIPCRCFLFN 455 (526)
T ss_pred ----HHHHHHcCCeEEEEEeC
Confidence 45667899999999877
No 192
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=26.05 E-value=7.1e+02 Score=25.35 Aligned_cols=56 Identities=20% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCC---------------CCCCCCCHHHHHHhHHHHHHHHHHHh
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRD---------------IAPDGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~D---------------l~P~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
-++......-.|.+...+.|++++.+|-.+ -.-.|-+++.+-+-+.++++.+++..
T Consensus 135 ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~ 205 (327)
T cd02803 135 EIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV 205 (327)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc
Confidence 456666666677788888999999997432 11257788777777777766666553
No 193
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.90 E-value=1.3e+02 Score=21.65 Aligned_cols=31 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHhCCCCCCC--chhHHHHHHhhh
Q 037393 471 DFEMLEKKAMEWGEPKVPS--AKQELAEMIFQS 501 (503)
Q Consensus 471 ~~~~l~~~a~~~~~~~~~s--g~qe~~e~~~n~ 501 (503)
|-++|.++-.++|.+.+.+ -|.|+++.+=..
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 5678999999999666654 477777765433
No 194
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=25.81 E-value=5.3e+02 Score=27.67 Aligned_cols=52 Identities=4% Similarity=-0.177 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHH
Q 037393 230 YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAA 285 (503)
Q Consensus 230 Ra~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~d 285 (503)
++.+++.++++++.+++.|.+..+...--.|.++..-+|+. .+.+..+.+.+
T Consensus 157 ~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~----~l~~~~~~~~~ 208 (347)
T PLN02746 157 IEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPS----KVAYVAKELYD 208 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHH----HHHHHHHHHHH
Confidence 67899999999999999998764333322343334445654 44444444443
No 195
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=25.76 E-value=2.8e+02 Score=27.50 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHH
Q 037393 239 KAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFES 282 (503)
Q Consensus 239 raiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~ 282 (503)
+.+..+.+.|++.+|+ |+-=|. +.|+++.++.+.+.++.
T Consensus 185 ~ti~~~~~aGad~iVv--GsaI~~---a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 185 ETIDIAADAGANVIVA--GSSIFK---AKDRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHHHHcCCCEEEE--chHHhC---CCCHHHHHHHHHHHHHH
Confidence 4455677789998887 444332 46899888888877765
No 196
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.75 E-value=5.8e+02 Score=26.15 Aligned_cols=96 Identities=13% Similarity=-0.017 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHH----HHhcCCceeeeeccCCCCCccccCCCCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAK----ELQGTKVRPLWGTAQLFSHPRYMHGAATS 224 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk----~l~~tGvkl~~~tanlF~~prfk~GA~Tn 224 (503)
.++...++.+.++||+++++--.=.--+.-+.+|.+.-++-+.+.+. .+.+.||++.++ |-...
T Consensus 40 ~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i------------Gd~~~ 107 (239)
T PRK14839 40 EAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRAYLRNETERLARNGVRLTVI------------GRRDR 107 (239)
T ss_pred HHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE------------eChhh
Confidence 36777888999999999987222222245566777766665554443 333789999888 66555
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 225 SEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 225 PD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
-.++++ +.++++.+.++.-.+=.+.+-.+.-|
T Consensus 108 Lp~~l~----~~i~~~e~~T~~n~~~~Lnia~~Ygg 139 (239)
T PRK14839 108 LPDGIP----EAIARAEAATAGGDRLHLRIAVDYSA 139 (239)
T ss_pred CCHHHH----HHHHHHHHHhcCCCceEEEEEecCCC
Confidence 556654 45667777787766666776665444
No 197
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.38 E-value=8.2e+02 Score=26.35 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=52.0
Q ss_pred CCCCCCHHHHHH---------HHHHHHHHHH-HHHHhCCC---eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 037393 221 AATSSEVAVYAY---------AAAQVKKAME-VTHYLGGE---NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYK 287 (503)
Q Consensus 221 A~TnPD~~VRa~---------Ai~~vkraiD-ia~eLGa~---~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya 287 (503)
|+-+++++.|++ .++.++++++ .+++.|-. +|++..| + | |-.+..+.|+++++.
T Consensus 239 SL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~G---v----N-Ds~eda~~L~~~l~~----- 305 (368)
T PRK14456 239 SLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEG---I----N-DSPEDARKLIRFASR----- 305 (368)
T ss_pred EecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcC---C----C-CCHHHHHHHHHHHhc-----
Confidence 356788888874 3488888887 56666643 2444544 3 2 444445555555542
Q ss_pred HhcCCCceE-EeccCCCCCCCCCccccHHHHHHHHHHh
Q 037393 288 KKIGFKGNL-LIEPKPQEPTKHQYDWDAATAANFLRKY 324 (503)
Q Consensus 288 ~~iG~~~~~-~IEPKP~EP~~h~y~~dvgt~l~fl~~~ 324 (503)
.+. ++ +|+|.|..+.++. -|+-.....|.+.+
T Consensus 306 --~~~--~VnlIpyn~~~~~~~~-~ps~e~i~~F~~~L 338 (368)
T PRK14456 306 --FFC--KINLIDYNSIVNIKFE-PVCSSTRERFRDRL 338 (368)
T ss_pred --CCC--eeEEeeeccCCCCCCC-CCCHHHHHHHHHHH
Confidence 222 33 6788888776643 56666777776544
No 198
>PLN02537 diaminopimelate decarboxylase
Probab=25.30 E-value=5.8e+02 Score=27.16 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=49.6
Q ss_pred CceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC--CeEEEccCCcCcCCCC-C---CCHHHHHH
Q 037393 201 KVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG--ENYVFWGGREGYQSLL-N---TDMGREID 274 (503)
Q Consensus 201 Gvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa--~~~v~WgGrEGydy~~-q---tD~~~~~d 274 (503)
++++..+ ++| .|+- ..+++....+++.+.+.++..++.|- +.+.+=|| -|..|.. + .|+ +
T Consensus 181 ~l~l~Gl----h~H----~gs~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~idiGGG-f~v~y~~~~~~~~~~----~ 246 (410)
T PLN02537 181 ELKLVGA----HCH----LGST-ITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGG-LGIDYYHAGAVLPTP----R 246 (410)
T ss_pred CCcEEEE----Eec----cCCC-CCchHHHHHHHHHHHHHHHHHHHcCCCccEEEcCCC-ccccCCCCCCCCCCH----H
Confidence 7887776 333 2332 34788889999999998888888764 34555455 3544421 1 143 3
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeccCC
Q 037393 275 HMANFFESAAAYKKKIGFKGNLLIEPKP 302 (503)
Q Consensus 275 ~l~e~l~~v~dya~~iG~~~~~~IEPKP 302 (503)
.+++.++.+.+ +.+ .++.+||=-
T Consensus 247 ~~~~~i~~~~~---~~~--~~li~EPGR 269 (410)
T PLN02537 247 DLIDTVRELVL---SRD--LTLIIEPGR 269 (410)
T ss_pred HHHHHHHHHHH---hcC--CEEEEccCh
Confidence 44444444443 333 489998744
No 199
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=25.22 E-value=8.6e+02 Score=25.99 Aligned_cols=127 Identities=15% Similarity=0.172 Sum_probs=69.2
Q ss_pred HHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccc-----cCC------CCC
Q 037393 155 FEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRY-----MHG------AAT 223 (503)
Q Consensus 155 fe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prf-----k~G------A~T 223 (503)
++.+.++|+..+.|---+ |. + ...+.+++++++++ .|+.-..+|+|-+.-++. ..| ++-
T Consensus 99 i~~~~~~Gv~~I~~tGGE--Pl---l---r~dl~eli~~l~~~--~gi~~i~itTNG~lL~~~~~~L~~aGld~VnISLD 168 (373)
T PLN02951 99 AGLFVAAGVDKIRLTGGE--PT---L---RKDIEDICLQLSSL--KGLKTLAMTTNGITLSRKLPRLKEAGLTSLNISLD 168 (373)
T ss_pred HHHHHHCCCCEEEEECCC--Cc---c---hhhHHHHHHHHHhc--CCCceEEEeeCcchHHHHHHHHHhCCCCeEEEeec
Confidence 456788999999874432 21 1 12345544444432 366555666665542221 112 233
Q ss_pred CCCHHHHHH-----HHHHHHHHHHHHHHhCCCeEEE-ccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEE
Q 037393 224 SSEVAVYAY-----AAAQVKKAMEVTHYLGGENYVF-WGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLL 297 (503)
Q Consensus 224 nPD~~VRa~-----Ai~~vkraiDia~eLGa~~~v~-WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~ 297 (503)
+.+|+.++. ..+++.++|+.+++.|-..+.+ ..--.|+ +.. + +..+++++++.|.. --.
T Consensus 169 sl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~------N~~-E-------i~~li~~a~~~gi~-vr~ 233 (373)
T PLN02951 169 TLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGF------NDD-E-------ICDFVELTRDKPIN-VRF 233 (373)
T ss_pred cCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCC------CHH-H-------HHHHHHHHHhCCCe-EEE
Confidence 556665543 2478999999999998643221 2222232 221 2 34444555556654 337
Q ss_pred eccCCCCCC
Q 037393 298 IEPKPQEPT 306 (503)
Q Consensus 298 IEPKP~EP~ 306 (503)
||+.|...+
T Consensus 234 ie~mP~~~~ 242 (373)
T PLN02951 234 IEFMPFDGN 242 (373)
T ss_pred EEcccCCCC
Confidence 899988755
No 200
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=24.64 E-value=7.7e+02 Score=29.29 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 156 EFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
..|++.|.+.|-+--++ .+..+++..|. ++|.+.|+.+.-+ ++.+.+|+. |+
T Consensus 117 ~~l~~aGceiVRvtv~~--------~~~A~al~~I~---~~L~~~g~~iPLV-ADIHF~~~~---------------Al- 168 (733)
T PLN02925 117 MRIADKGADIVRITVQG--------KKEADACFEIK---NTLVQKGYNIPLV-ADIHFAPSV---------------AL- 168 (733)
T ss_pred HHHHHcCCCEEEEcCCC--------HHHHHhHHHHH---HHHhhcCCCCCEE-EecCCCHHH---------------HH-
Confidence 37899999988554444 34455777644 4444667777766 777766432 11
Q ss_pred HHHHHHHHHHHhCCCeEEEccCCcC--------cCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCC
Q 037393 236 QVKKAMEVTHYLGGENYVFWGGREG--------YQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTK 307 (503)
Q Consensus 236 ~vkraiDia~eLGa~~~v~WgGrEG--------ydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~ 307 (503)
+|++. .+.+-+=||-=| =+|- ..+|.++++++.+-+..+++.+++.|.-+||.+-.=-=+.+-
T Consensus 169 ---~a~~~-----vdkiRINPGN~~~~~k~F~~~eYt-deeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~GSLs~ri 239 (733)
T PLN02925 169 ---RVAEC-----FDKIRVNPGNFADRRAQFEKLEYT-EDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNHGSLSDRI 239 (733)
T ss_pred ---HHHHh-----cCCeEECCcccCCccccccccccc-hhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCCcCchHHH
Confidence 22222 455555555222 2333 577999999999999999999999998888865322222221
Q ss_pred -CCc----cccHHHHHHHH---HHhCCCCCceeec
Q 037393 308 -HQY----DWDAATAANFL---RKYGLINDFKLNI 334 (503)
Q Consensus 308 -h~y----~~dvgt~l~fl---~~~gl~~~~gVni 334 (503)
..| ..-+.+++-|+ +++|..+ +.+-+
T Consensus 240 ~~~yGdtp~gmVeSAle~~~i~e~~~f~d-iviS~ 273 (733)
T PLN02925 240 MSYYGDSPRGMVESAFEFARICRKLDYHN-FVFSM 273 (733)
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHCCCCc-EEEEE
Confidence 112 22355666665 5566653 55543
No 201
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=24.28 E-value=5.3e+02 Score=24.78 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCceecccCCCCC
Q 037393 141 TNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIA 174 (503)
Q Consensus 141 ~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~ 174 (503)
.||++.|+ .+.+.|++.+.+||.+-.
T Consensus 29 ~dp~~~a~--------~~~~~g~d~l~v~dl~~~ 54 (234)
T cd04732 29 DDPVEVAK--------KWEEAGAKWLHVVDLDGA 54 (234)
T ss_pred CCHHHHHH--------HHHHcCCCEEEEECCCcc
Confidence 58999997 677899999999988744
No 202
>KOG0186 consensus Proline oxidase [Amino acid transport and metabolism]
Probab=24.20 E-value=2.5e+02 Score=31.62 Aligned_cols=122 Identities=20% Similarity=0.159 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccc--
Q 037393 264 LLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATL-- 341 (503)
Q Consensus 264 ~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~l-- 341 (503)
++++--+++++.+.+-++.+++++.+.++..-+--|+-=.+|.- -..++.+.++++-++...+..-+=-+.|
T Consensus 256 ~ls~eee~el~~~~~rl~~v~~~a~e~~V~llvDAE~T~lqpai------~~lt~~l~~kfN~~k~~p~v~NTyQaYLKd 329 (506)
T KOG0186|consen 256 PLSAEEEQELEKMLSRLDKVAQRAQEKGVRLLVDAEQTYLQPAI------SYLTYELARKFNSDKERPIVFNTYQAYLKD 329 (506)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCceeechhhhhhhhHH------HHHHHHHHHHhCCCCCCceEeeeHHHHHhh
Confidence 57888899999999999999999999988444444554445421 2345555677875432222222212222
Q ss_pred cCCCHHHHHHHHHHcCCeeEEecCCCCCCCCC------CCCCCcC-CHHHHHHHHHH
Q 037393 342 SGHSCHHDIETARLNGLLGNIDANTGDPQVGW------DTDQFLT-DIGEATSIMLS 391 (503)
Q Consensus 342 AG~n~ah~va~A~~~gkLg~ihlNdg~~q~Gw------d~Dqf~~-~~~e~~~~m~~ 391 (503)
+|++..+++..|.++|..+|+-+=+|-|..-= ..+.+|+ +-+++|..+|.
T Consensus 330 a~e~l~~d~k~A~reG~~~G~KLVRGAYl~sEra~a~~~G~edp~~d~yeat~~~y~ 386 (506)
T KOG0186|consen 330 AGERLHLDLKLARREGWPFGAKLVRGAYLSSERARAISIGYEDPTNDTYEATSAMYN 386 (506)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhhhhhhhccchhHHHhcCCcCCCCchHHHHHHHHH
Confidence 68999999999999999999999888764321 2233455 55777777664
No 203
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=24.13 E-value=4.7e+02 Score=29.06 Aligned_cols=160 Identities=17% Similarity=0.186 Sum_probs=82.0
Q ss_pred eccccCCCCCCC--CCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHhCCceecc---cCCCC--CCCCCCHHHHHHh-
Q 037393 116 FWHTFRGTGSDP--FGVPTKSWPWE-DGTNSMAMAKRRMRANFEFIDKLGVDFWCF---HDRDI--APDGETLKEANAN- 186 (503)
Q Consensus 116 ~Wht~~~~g~Dp--FG~~T~~rpw~-~~~d~~e~a~~r~~~afe~l~kLG~~~~~f---HD~Dl--~P~g~t~~e~~~n- 186 (503)
+||.=-++-.|+ ||.--+.--|. ..-||-+-|+ .+++.|++|+-. ||+-. .|-..|..-+-+.
T Consensus 26 ~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eWar--------~fK~aGAKyvilvakHHDGFaLw~t~ys~wnsvk~G 97 (430)
T COG3669 26 FYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWAR--------LFKEAGAKYVILVAKHHDGFALWPTDYSVWNSVKRG 97 (430)
T ss_pred eEEeccccccCcccccccccccccCcccCCHHHHHH--------HHHHcCCcEEEEeeeecCCeeecccccccccccccC
Confidence 345444555566 66544422221 1238999997 899999999988 66543 3432222211111
Q ss_pred -HHHHHHHHHHHh-cCCceeeeeccCCCCCccccCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcC-
Q 037393 187 -LDEVVALAKELQ-GTKVRPLWGTAQLFSHPRYMHGAATSS-EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQ- 262 (503)
Q Consensus 187 -l~~i~~~lk~l~-~tGvkl~~~tanlF~~prfk~GA~TnP-D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGyd- 262 (503)
=+.||-.+++-. +.|+...--..+- -||.+.++..-.. |..--.++..+.++. ++.++++.=++++=+.
T Consensus 98 pKrDlvgela~Avr~qGL~FGvy~s~a-~h~W~~~~g~~~~~d~~dp~y~~~~~~~~------~~~~~~~~~~~~d~~~~ 170 (430)
T COG3669 98 PKRDLVGELAKAVREQGLRFGVYLSGA-WHPWDFHSGYYADSDEKDPNYYLAQLQEL------LSGANYGNAGPFDEVWL 170 (430)
T ss_pred CcccHHHHHHHHHHHcCCeeeEeeccC-cccccccCCccccccccCcccccccHHHH------hcccccccCCCCcchhh
Confidence 012333333333 7787755443321 2355555542211 111112224444444 3444444433333221
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 037393 263 -SLLNTDMGREIDHMANFFESAAAYKKKI 290 (503)
Q Consensus 263 -y~~qtD~~~~~d~l~e~l~~v~dya~~i 290 (503)
..-+.....-.++|++-+..+..|.++.
T Consensus 171 dnaw~~~~~~~~~wl~r~~e~i~~y~P~~ 199 (430)
T COG3669 171 DNAWGNGPAKVNYWLARWFELIRRYQPDL 199 (430)
T ss_pred cccccCChHHHHHHHHHHHHHHHhhCCCe
Confidence 1222446778899999999999997775
No 204
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=24.07 E-value=5.3e+02 Score=25.55 Aligned_cols=110 Identities=12% Similarity=0.031 Sum_probs=64.1
Q ss_pred HHHHhCCceecccCCCCCC----CCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHH
Q 037393 157 FIDKLGVDFWCFHDRDIAP----DGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAY 232 (503)
Q Consensus 157 ~l~kLG~~~~~fHD~Dl~P----~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~ 232 (503)
.++.-|+..|.-=--+..| ..-|..| ++.+...|+++..+ |-.|.- ....--++.
T Consensus 28 ~l~~~gy~~vgrYls~~~~~~~~k~lt~~e-----------~~~i~~~Gl~~~pI---------yq~~~~-~~~~~~~~~ 86 (212)
T cd06418 28 TLKAAGYGIVGRYLTGSPGGCLSKNLTATE-----------LETITAAGLKVFPI---------YQGGGY-SLDYFGYEQ 86 (212)
T ss_pred HHHHCCCeEEEEEcCCCCCCCCCCCCCHHH-----------HHHHHHCCCEEEEE---------EECCCc-cccccCHHH
Confidence 4677888877652222112 2233332 34455889998776 322221 122224577
Q ss_pred HHHHHHHHHHHHHHhCCC-eEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Q 037393 233 AAAQVKKAMEVTHYLGGE-NYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGF 292 (503)
Q Consensus 233 Ai~~vkraiDia~eLGa~-~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~ 292 (503)
.....++|+..+++||.. .-.++..-|-+.+..+ +....--+-+++..++ ...||
T Consensus 87 G~~dA~~A~~~A~~lG~p~gs~IYfavD~d~~~~~--~~~~v~~Y~~a~~~~l---~~~gY 142 (212)
T cd06418 87 GVKDARDAVAAARALGFPPGTIIYFAVDFDALDDE--VTEVILPYFRGWNDAL---HEAGY 142 (212)
T ss_pred HHHHHHHHHHHHHHcCCCCCCEEEEEeecCCCcch--hHHHHHHHHHHHHHHH---HhcCC
Confidence 899999999999999998 7889999885543322 4433333344444443 34554
No 205
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=23.95 E-value=6.4e+02 Score=25.05 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHh-CCCeEEEccCCcCcC
Q 037393 234 AAQVKKAMEVTHYL-GGENYVFWGGREGYQ 262 (503)
Q Consensus 234 i~~vkraiDia~eL-Ga~~~v~WgGrEGyd 262 (503)
++..++-++++.+. +...+++|+-.||+.
T Consensus 202 A~~~~~~l~~~~~~p~v~gi~~Wg~~d~~~ 231 (254)
T smart00633 202 AADYEEVFKACLAHPAVTGVTVWGVTDKYS 231 (254)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeCCccCCc
Confidence 45556666666665 567899999888864
No 206
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=23.83 E-value=3.4e+02 Score=28.83 Aligned_cols=60 Identities=7% Similarity=0.032 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 238 KKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 238 kraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
.+.+|.+.+.|.+.+.+...-. +...+..+++-.++..+.+..+++|+++.|....|..|
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~S--d~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~e 134 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVS--DLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGE 134 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccC--HHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeec
Confidence 4456777788998887776521 11112222333445556666777888889987777776
No 207
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=23.35 E-value=8.2e+02 Score=25.07 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCceecccCCCCCC-CCCCHHHHHHhHHH---------------HHHHHHHHhcCCceeeeeccCCC
Q 037393 149 RRMRANFEFIDKLGVDFWCFHDRDIAP-DGETLKEANANLDE---------------VVALAKELQGTKVRPLWGTAQLF 212 (503)
Q Consensus 149 ~r~~~afe~l~kLG~~~~~fHD~Dl~P-~g~t~~e~~~nl~~---------------i~~~lk~l~~tGvkl~~~tanlF 212 (503)
+.+...++.+.++|+..+.|..-+ | --.++.+.-+.+.+ +.+.++++.+.|+.-+.+..+-+
T Consensus 52 eei~~~i~~~~~~gi~~I~~tGGE--Pll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i~ISlds~ 129 (331)
T PRK00164 52 EEIERLVRAFVALGVRKVRLTGGE--PLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRVNVSLDSL 129 (331)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCC--CcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEEEEEeccC
Q ss_pred CCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCC-CeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 037393 213 SHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGG-ENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIG 291 (503)
Q Consensus 213 ~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa-~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG 291 (503)
....|.. ++.. ...+++.++++.+++.|- ...+--....|.+. +-+..+++++.+.|
T Consensus 130 ~~e~~~~--i~~~------~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~--------------~ei~~l~~~~~~~g 187 (331)
T PRK00164 130 DPERFKA--ITGR------DRLDQVLAGIDAALAAGLTPVKVNAVLMKGVND--------------DEIPDLLEWAKDRG 187 (331)
T ss_pred CHHHhcc--CCCC------CCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCH--------------HHHHHHHHHHHhCC
Q ss_pred CCceEEeccCCCCCCCCCccccHHHHHHHHHHh
Q 037393 292 FKGNLLIEPKPQEPTKHQYDWDAATAANFLRKY 324 (503)
Q Consensus 292 ~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~ 324 (503)
+..+ .||+-|..+....+....-+...+++.+
T Consensus 188 v~v~-~ie~~p~~~~~~~~~~~~~~~~~~~~~l 219 (331)
T PRK00164 188 IQLR-FIELMPTGEGNEWFRKHHLSGAEIRARL 219 (331)
T ss_pred CeEE-EEEeeECCCCcchhhhcCCCHHHHHHHH
No 208
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=23.25 E-value=1.5e+02 Score=24.14 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037393 20 HERKRMMEAQKILLLLLLC 38 (503)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~ 38 (503)
.+||||.+...|+.++++.
T Consensus 30 k~qk~~~~~~~i~~~~~i~ 48 (59)
T PF09889_consen 30 KRQKRMRKTQYIFFGIFIL 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666644444333
No 209
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=23.15 E-value=2.4e+02 Score=30.48 Aligned_cols=23 Identities=9% Similarity=0.069 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhCCCeEEEccC
Q 037393 235 AQVKKAMEVTHYLGGENYVFWGG 257 (503)
Q Consensus 235 ~~vkraiDia~eLGa~~~v~WgG 257 (503)
+..++.++.+.+||.+.+++.+-
T Consensus 208 e~~~~~l~~~~~l~~~~is~y~L 230 (430)
T PRK08208 208 ASWMESLDQALVYRPEELFLYPL 230 (430)
T ss_pred HHHHHHHHHHHhCCCCEEEEccc
Confidence 34455556666666666666653
No 210
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=22.98 E-value=4.1e+02 Score=25.48 Aligned_cols=71 Identities=18% Similarity=0.155 Sum_probs=39.4
Q ss_pred HHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHH
Q 037393 156 EFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAA 235 (503)
Q Consensus 156 e~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~ 235 (503)
+.+.++|++++++|-.- + . ..+.++ ++...+.|+++.-.. ++ +++ ++.-.. ..
T Consensus 74 ~~~~~~gad~vtvh~e~--g-----~---~~l~~~---i~~~~~~g~~~~v~~-~~-~~~----~~~~~~--------~~ 126 (215)
T PRK13813 74 EAVFEAGAWGIIVHGFT--G-----R---DSLKAV---VEAAAESGGKVFVVV-EM-SHP----GALEFI--------QP 126 (215)
T ss_pred HHHHhCCCCEEEEcCcC--C-----H---HHHHHH---HHHHHhcCCeEEEEE-eC-CCC----CCCCCH--------HH
Confidence 56788999999999752 1 1 123332 233335666665442 21 111 111111 24
Q ss_pred HHHHHHHHHHHhCCCeEE
Q 037393 236 QVKKAMEVTHYLGGENYV 253 (503)
Q Consensus 236 ~vkraiDia~eLGa~~~v 253 (503)
++.+.+.++.++|....+
T Consensus 127 ~~~~v~~m~~e~G~~g~~ 144 (215)
T PRK13813 127 HADKLAKLAQEAGAFGVV 144 (215)
T ss_pred HHHHHHHHHHHhCCCeEE
Confidence 567778889999876554
No 211
>PRK15206 long polar fimbrial protein LpfD; Provisional
Probab=22.88 E-value=71 Score=34.39 Aligned_cols=33 Identities=24% Similarity=0.258 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCccCc
Q 037393 25 MMEAQKILLLLLLCLNLVSSLVIAGAP-PTCAAN 57 (503)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 57 (503)
|||+-.+++.+|+++.++...+.+|+. ..|..+
T Consensus 1 ~~~k~~~~~~~l~~~~~~~~~a~~a~~~G~C~~~ 34 (359)
T PRK15206 1 MLKKLMMFTGLLGGSVLFSGQALAAADWGPCTPE 34 (359)
T ss_pred ChHHHHHHHHHHHHHHHhccchhhcccCCcccCC
Confidence 666665556666666555442323332 577554
No 212
>cd06843 PLPDE_III_PvsE_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme PvsE. This subfamily is composed of PvsE from Vibrio parahaemolyticus and similar proteins. PvsE is a vibrioferrin biosynthesis protein which is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. It has been suggested that PvsE may be involved in the biosynthesis of the polycarboxylate siderophore vibrioferrin. It may catalyze the decarboxylation of serine to yield ethanolamine. PvsE may require homodimer formation and the presence of the PLP cofactor for activity.
Probab=22.73 E-value=6.7e+02 Score=26.27 Aligned_cols=87 Identities=13% Similarity=-0.098 Sum_probs=47.0
Q ss_pred CCceeeeeccCCCCCccccCCCCCCCCHHHHHHHHHHH-HHHHHHHHHhCC--CeEEEccCCcCcCCCCCCCHHHHHHHH
Q 037393 200 TKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYAAAQV-KKAMEVTHYLGG--ENYVFWGGREGYQSLLNTDMGREIDHM 276 (503)
Q Consensus 200 tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~Ai~~v-kraiDia~eLGa--~~~v~WgGrEGydy~~qtD~~~~~d~l 276 (503)
.++++..+ +.| .|+- ..|++.+..++..+ +.+.++..++|- +.+.+=|| -|..|.... ..-.++.+
T Consensus 162 ~~l~~~Gl----h~H----~gs~-~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~idiGGG-f~~~y~~~~-~~~~~~~~ 230 (377)
T cd06843 162 PNIRLRGF----HFH----LMSH-NLDAAAHLALVKAYLETARQWAAEHGLDLDVVNVGGG-IGVNYADPE-EQFDWAGF 230 (377)
T ss_pred CCccEEEE----EEE----cCcC-cCChHHHHHHHHHHHHHHHHHHHHhCCCCcEEEecCc-cccccCCCC-CCCCHHHH
Confidence 36777665 333 2443 34666677777764 556666777663 45555555 466654322 00123455
Q ss_pred HHHHHHHHHHHHhcCCCceEEecc
Q 037393 277 ANFFESAAAYKKKIGFKGNLLIEP 300 (503)
Q Consensus 277 ~e~l~~v~dya~~iG~~~~~~IEP 300 (503)
.+.++.+++.. +.+.++.+||
T Consensus 231 ~~~i~~~~~~~---~~~~~l~~Ep 251 (377)
T cd06843 231 CEGLDQLLAEY---EPGLTLRFEC 251 (377)
T ss_pred HHHHHHHHHhc---CCCCEEEEcc
Confidence 55565555431 1345888877
No 213
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=22.69 E-value=4.5e+02 Score=27.90 Aligned_cols=121 Identities=16% Similarity=0.094 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCceecccCCCCC---------CCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCC
Q 037393 153 ANFEFIDKLGVDFWCFHDRDIA---------PDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAAT 223 (503)
Q Consensus 153 ~afe~l~kLG~~~~~fHD~Dl~---------P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~T 223 (503)
+.++.+.++|++||=++-.|-. -.....++..+-+.+|.+++++.-..=+.+.-..+++|-.+- +|.+.
T Consensus 130 ~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi~qng~~l~d~~~--a~l~~ 207 (300)
T COG2342 130 SYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVNAAKKMVKFIAAIAEYARAANPLFRVIPQNGAELFDADG--AGLLP 207 (300)
T ss_pred HHHHHHHHccCceEEEeeechHHHHHHhcccccccHHHHHHHHHHHHHHHHHhcCCcEEEEecccHhhcCccc--cchhh
Confidence 4557999999999977655522 112223333333445444444432221222233355565441 22233
Q ss_pred CCCHHH-----------HHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHH
Q 037393 224 SSEVAV-----------YAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESA 283 (503)
Q Consensus 224 nPD~~V-----------Ra~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v 283 (503)
|-+..+ +-...+.-.+-++.-..+|.-.||+==+-+| +|++. .|+.+.+...
T Consensus 208 ~~~~~~~vE~~~~d~~~~~~~~~~~e~~Lr~l~~~G~~V~vieY~~d~------~~~~~--~r~~~~~~kt 270 (300)
T COG2342 208 RLGFGVAVETVFYDDERPLESADTFEEYLRKLCRLGKPVYVIEYALDP------TDPRE--SRLEDLFEKT 270 (300)
T ss_pred ccccceEEEEEEecCccCCCchhhHHHHHHHHHhcCCcEEEEEecCCC------Cchhh--HHHHHHHHHh
Confidence 222111 1122222235667777899999998666554 33333 5555555444
No 214
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=22.68 E-value=8.6e+02 Score=25.08 Aligned_cols=96 Identities=18% Similarity=0.088 Sum_probs=52.3
Q ss_pred HHHHHHHhC--CceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHhcCCceeeeeccC-CCCCccccCCCCCCCCHHHH
Q 037393 154 NFEFIDKLG--VDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQGTKVRPLWGTAQ-LFSHPRYMHGAATSSEVAVY 230 (503)
Q Consensus 154 afe~l~kLG--~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~~tGvkl~~~tan-lF~~prfk~GA~TnPD~~VR 230 (503)
.++.+.+++ +.++.+|-.. ...+.++..+.++.+.+...++.+.|..+.++... =|+.| |. -.+++-+-.
T Consensus 153 ~~~~~~~~~l~l~Gl~~H~gs---~~~d~~~~~~~~~~~~~~~~~l~~~g~~~~~id~GGG~~~~-y~---~~~~~~~~~ 225 (368)
T cd06810 153 ALERAKELDLRLVGLHFHVGS---QILDLETIVQALSDARELIEELVEMGFPLEMLDLGGGLGIP-YD---EQPLDFEEY 225 (368)
T ss_pred HHHHHHhCCCcEEEEEEcCCc---CCCCHHHHHHHHHHHHHHHHHHHhcCCCCCEEEeCCCcccc-cC---CCCCCHHHH
Confidence 344566655 4566666654 44578888888888777777776667666555421 13332 22 134565555
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEccCC
Q 037393 231 AYAAAQVKKAMEVTHYLGGENYVFWGGR 258 (503)
Q Consensus 231 a~Ai~~vkraiDia~eLGa~~~v~WgGr 258 (503)
+.++....+ +.....+-..+++=+||
T Consensus 226 ~~~i~~~~~--~~~~~~~~~~l~~EpGr 251 (368)
T cd06810 226 AALINPLLK--KYFPNDPGVTLILEPGR 251 (368)
T ss_pred HHHHHHHHH--HHhccCCCcEEEEecCh
Confidence 555544433 22222333455555663
No 215
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=22.49 E-value=4.4e+02 Score=28.15 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 239 KAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 239 raiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
+.++.+.+.|.+.+.+...-- +.-.+..++.-.++..+.+..+++++++.|....+..|
T Consensus 79 ~di~~a~~~g~~~i~i~~~~S--d~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~e 137 (378)
T PRK11858 79 SDIDASIDCGVDAVHIFIATS--DIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAE 137 (378)
T ss_pred HHHHHHHhCCcCEEEEEEcCC--HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 346667778888777765411 11111222223455555666667788888987787766
No 216
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=22.44 E-value=1.8e+02 Score=20.46 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHhCCCCCCCc-hhHHHHHHhh
Q 037393 468 GKADFEMLEKKAMEWGEPKVPSA-KQELAEMIFQ 500 (503)
Q Consensus 468 g~~~~~~l~~~a~~~~~~~~~sg-~qe~~e~~~n 500 (503)
.+++..+|.+...+.|-|. || |+|+.+.+.+
T Consensus 2 ~~l~~~~Lk~~l~~~gl~~--~G~K~~Lv~Rl~~ 33 (35)
T smart00513 2 AKLKVSELKDELKKRGLST--SGTKAELVDRLLE 33 (35)
T ss_pred CcCcHHHHHHHHHHcCCCC--CCCHHHHHHHHHH
Confidence 3678999999999999753 55 5566655543
No 217
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=22.36 E-value=5.4e+02 Score=24.97 Aligned_cols=75 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHHHHhCCceecccC--CCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCceeeeeccCC
Q 037393 137 WED--GTNSMAMAKRRMRANFEFIDKLGVDFWCFHD--RDIAPDGETLKEANANLDEVVALAKELQ-GTKVRPLWGTAQL 211 (503)
Q Consensus 137 w~~--~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD--~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGvkl~~~tanl 211 (503)
|.. ..++++.++ .+.+.|++.+.+|+ ++---.|.+++ .++++. ..++.+...
T Consensus 147 ~~~~~~~~~~~~~~--------~~~~~G~d~i~i~~i~~~g~~~g~~~~-----------~~~~i~~~~~ipvia~---- 203 (232)
T TIGR03572 147 GRRATGRDPVEWAR--------EAEQLGAGEILLNSIDRDGTMKGYDLE-----------LIKTVSDAVSIPVIAL---- 203 (232)
T ss_pred CcccCCCCHHHHHH--------HHHHcCCCEEEEeCCCccCCcCCCCHH-----------HHHHHHhhCCCCEEEE----
Q ss_pred CCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Q 037393 212 FSHPRYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVF 254 (503)
Q Consensus 212 F~~prfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~ 254 (503)
|...|+ ....++.++.|++.+.+
T Consensus 204 --------GGi~s~------------~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 204 --------GGAGSL------------DDLVEVALEAGASAVAA 226 (232)
T ss_pred --------CCCCCH------------HHHHHHHHHcCCCEEEE
No 218
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.08 E-value=8.5e+02 Score=24.79 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHH----HHhcCCceeeeeccCCCCCccccCCCCCCC
Q 037393 150 RMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAK----ELQGTKVRPLWGTAQLFSHPRYMHGAATSS 225 (503)
Q Consensus 150 r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk----~l~~tGvkl~~~tanlF~~prfk~GA~TnP 225 (503)
++...++.+.++||+++++--.-.--+.-+.+|...-++-+.++++ .+.+.||+|..+ |-...-
T Consensus 38 ~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~i------------Gd~~~L 105 (230)
T PRK14837 38 RAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVS------------GDIESL 105 (230)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEE------------cChhhC
Confidence 6677788999999999987222222244566777665555444443 344789999888 555554
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcC
Q 037393 226 EVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREG 260 (503)
Q Consensus 226 D~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEG 260 (503)
.++++ +.++++.+.++.-.+-.+.+=....|
T Consensus 106 p~~l~----~~i~~~e~~T~~n~~~~Lnia~~Ygg 136 (230)
T PRK14837 106 SEEVK----KSIKDAISFTKNFDGLVLNLAINYGG 136 (230)
T ss_pred CHHHH----HHHHHHHHHhcCCCCcEEEEEecCCC
Confidence 45543 55667777777766666666655443
No 219
>PRK05354 arginine decarboxylase; Provisional
Probab=22.04 E-value=4.5e+02 Score=30.48 Aligned_cols=129 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCCceEEeccCCCCCCCCCccccHHHHHHHHHHhCCCCCceeecccccccccCCCHHHHHHHHHHcCC-
Q 037393 280 FESAAAYKKKIGFKGNLLIEPKPQEPTKHQYDWDAATAANFLRKYGLINDFKLNIECNHATLSGHSCHHDIETARLNGL- 358 (503)
Q Consensus 280 l~~v~dya~~iG~~~~~~IEPKP~EP~~h~y~~dvgt~l~fl~~~gl~~~~gVniD~gHa~lAG~n~ah~va~A~~~gk- 358 (503)
|+.+.+.+++.|...++.|--+|.-...+....+.|. ...||++++ .....+..+...|+
T Consensus 183 L~~I~~~a~~~~~~p~IglRi~~~~~~~g~~~~tgG~----------~SKFGl~~~---------ei~~~i~~lk~~~~l 243 (634)
T PRK05354 183 LELILEEAKELGVKPRLGVRARLASQGSGKWQSSGGE----------KSKFGLSAT---------EVLEAVERLREAGLL 243 (634)
T ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCCCCCcccCCCC----------CCCCCCCHH---------HHHHHHHHHHhCCCC
Q ss_pred --eeEEecCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHhC--------CCCCCcccccccCcCCC------CChHHHHHH
Q 037393 359 --LGNIDANTGDPQVGWDTDQFLTDIGEATSIMLSVIKNG--------GLAPGGFNFDAKLRRES------TDVEDLFIA 422 (503)
Q Consensus 359 --Lg~ihlNdg~~q~Gwd~Dqf~~~~~e~~~~m~~iLk~g--------G~~~Ggi~FDakprR~s------~d~edl~~a 422 (503)
|.++|+--| -.--+...+..-+.++..++.++.+.| | ||+.-|....+.+ .++++....
T Consensus 244 ~~L~GLHfHiG--SQi~d~~~~~~al~e~~~~~~eL~~~G~~l~~LDIG---GGlgV~Y~g~~~~~~~s~nydl~eya~~ 318 (634)
T PRK05354 244 DCLQLLHFHLG--SQIANIRDIKTAVREAARFYVELRKLGAPIQYLDVG---GGLGVDYDGTRSQSDSSVNYSLQEYAND 318 (634)
T ss_pred CceEEEEEeCC--CCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCEEEeC---CCcCcCCCCCcccccccCCCCHHHHHHH
Q ss_pred HHHHHHHHHH
Q 037393 423 HIVGMDTVAR 432 (503)
Q Consensus 423 ~i~~md~~ar 432 (503)
.+..+..+..
T Consensus 319 Iv~~l~~~~~ 328 (634)
T PRK05354 319 VVYTLKEICE 328 (634)
T ss_pred HHHHHHHHHH
No 220
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.98 E-value=8.3e+02 Score=26.15 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=59.1
Q ss_pred cCccchhcC-Ccccc-----ccceeeeeccccCCC-C------CCCCCCCCCCCCCCCC-------CCHHHHHHHHHHHH
Q 037393 95 YNPEEVILG-KKMKD-----WMRFSVAFWHTFRGT-G------SDPFGVPTKSWPWEDG-------TNSMAMAKRRMRAN 154 (503)
Q Consensus 95 y~~~~~i~g-k~m~~-----~lrFsv~~Wht~~~~-g------~DpFG~~T~~rpw~~~-------~d~~e~a~~r~~~a 154 (503)
++.++.|-+ |++.+ --+..+-+||..+.. . ..|.++.....|+... .+-++...+..-+|
T Consensus 76 ~~~~~~i~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~A 155 (382)
T cd02931 76 YNPTAFIRTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGES 155 (382)
T ss_pred cCCHHHhHHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 344555665 55554 237888899952211 1 1223333221122110 12344444455555
Q ss_pred HHHHHHhCCceecccCCC---C-------------CCCCCCHHHHHHhHHHHHHHHHHHh
Q 037393 155 FEFIDKLGVDFWCFHDRD---I-------------APDGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 155 fe~l~kLG~~~~~fHD~D---l-------------~P~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
-+...+.|+++|++|-.+ | .-.|-+++.+-+-+-+|++.+++-.
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~ 215 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARC 215 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhc
Confidence 567778999999987533 2 1257889988888888887777654
No 221
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=21.84 E-value=95 Score=21.05 Aligned_cols=20 Identities=15% Similarity=-0.014 Sum_probs=14.7
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 037393 222 ATSSEVAVYAYAAAQVKKAM 241 (503)
Q Consensus 222 ~TnPD~~VRa~Ai~~vkrai 241 (503)
+.+|+++||..|+.-+.+-+
T Consensus 9 l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 9 LNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HT-SSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 56899999999987665543
No 222
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.51 E-value=3e+02 Score=27.73 Aligned_cols=59 Identities=15% Similarity=0.178 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh--cCCceeeee
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ--GTKVRPLWG 207 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~--~tGvkl~~~ 207 (503)
-+.+.+++.++++..++||++++.+|--...+. +.++. ++.+++.+.++. ..|++|.--
T Consensus 83 r~~sv~~~~~~i~~A~~lga~~vv~H~G~~~~~--~~e~~---~~~~~~~l~~l~~~~~~v~l~lE 143 (274)
T TIGR00587 83 EEKSLDVLDEELKRCELLGIMLYNFHPGSALKC--SEEEG---LDNLIESLNVVIKETKIVTILLE 143 (274)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCC--CHHHH---HHHHHHHHHHHHhccCCCEEEEE
Confidence 345566888999999999999999997664432 22333 333333444443 346665544
No 223
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=21.20 E-value=4.8e+02 Score=27.36 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=44.4
Q ss_pred HHHHHHhCCceecccCCCCCCCCCCHHH-HHHhHHHHHHHHHHHhcCCceeeeeccCCCCCccccCCCCCCCCHHHHHHH
Q 037393 155 FEFIDKLGVDFWCFHDRDIAPDGETLKE-ANANLDEVVALAKELQGTKVRPLWGTAQLFSHPRYMHGAATSSEVAVYAYA 233 (503)
Q Consensus 155 fe~l~kLG~~~~~fHD~Dl~P~g~t~~e-~~~nl~~i~~~lk~l~~tGvkl~~~tanlF~~prfk~GA~TnPD~~VRa~A 233 (503)
++.|.+.|+..+.+.=....|+..+.-. .....+++++.++.+.+.|+++...+ - ++..+
T Consensus 107 ~~~L~~~g~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v~i~~-v-----------v~~~N------- 167 (378)
T PRK05301 107 LAALKDAGLDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPLTLNA-V-----------IHRHN------- 167 (378)
T ss_pred HHHHHHcCCCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCceEEEE-E-----------eecCC-------
Confidence 3578888988877622211121111000 00134555556666667787754332 1 11111
Q ss_pred HHHHHHHHHHHHHhCCCeEEE
Q 037393 234 AAQVKKAMEVTHYLGGENYVF 254 (503)
Q Consensus 234 i~~vkraiDia~eLGa~~~v~ 254 (503)
++++.+.++.+++||.+.+.+
T Consensus 168 ~~~i~~~~~~~~~lgv~~i~~ 188 (378)
T PRK05301 168 IDQIPRIIELAVELGADRLEL 188 (378)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 356788899999999998765
No 224
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.98 E-value=4.6e+02 Score=26.88 Aligned_cols=81 Identities=20% Similarity=0.179 Sum_probs=53.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCceEEec
Q 037393 220 GAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGNLLIE 299 (503)
Q Consensus 220 GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~~~IE 299 (503)
|.+.|-.++ |+=-+..||.+.+.+|+..+.|.+= .| .+... =++.+++.+.+.||
T Consensus 124 Gp~Ss~~~~----~iV~vetAiaml~dmG~~SiKffPM-~G------l~~le-------E~~avA~aca~~g~------- 178 (236)
T TIGR03581 124 GPLSSQGKE----AIVPIETAIAMLKDMGGSSVKFFPM-GG------LKHLE-------EYAAVAKACAKHGF------- 178 (236)
T ss_pred CcccccCCC----ceeeHHHHHHHHHHcCCCeeeEeec-CC------cccHH-------HHHHHHHHHHHcCC-------
Confidence 666665554 5566888999999999999999987 66 33443 34555556667776
Q ss_pred cCCCCCCCCCccccHHHHHHHHHHhCCC
Q 037393 300 PKPQEPTKHQYDWDAATAANFLRKYGLI 327 (503)
Q Consensus 300 PKP~EP~~h~y~~dvgt~l~fl~~~gl~ 327 (503)
+-||+.-+.......-+..+.+.|.+
T Consensus 179 --~lEPTGGIdl~Nf~~I~~i~ldaGv~ 204 (236)
T TIGR03581 179 --YLEPTGGIDLDNFEEIVQIALDAGVE 204 (236)
T ss_pred --ccCCCCCccHHhHHHHHHHHHHcCCC
Confidence 24777766555555555555555543
No 225
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.70 E-value=4.9e+02 Score=27.07 Aligned_cols=171 Identities=19% Similarity=0.257 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceecccCCCCC-C-----CCCCHHHHHHhHHHHHHHHHHHhcCCcee-eeeccCCCCCc
Q 037393 143 SMAMAKRRMRANFEFIDKLGVDFWCFHDRDIA-P-----DGETLKEANANLDEVVALAKELQGTKVRP-LWGTAQLFSHP 215 (503)
Q Consensus 143 ~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~-P-----~g~t~~e~~~nl~~i~~~lk~l~~tGvkl-~~~tanlF~~p 215 (503)
..+..|+=+ ++-+++|++|+-++. --. + .+.+-..-...+.++++|.+++ ||.| +|...+-..
T Consensus 30 ~t~~~k~yI----DfAa~~G~eYvlvD~-GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~K---gVgi~lw~~~~~~~-- 99 (273)
T PF10566_consen 30 TTETQKRYI----DFAAEMGIEYVLVDA-GWYGWEKDDDFDFTKPIPDFDLPELVDYAKEK---GVGIWLWYHSETGG-- 99 (273)
T ss_dssp SHHHHHHHH----HHHHHTT-SEEEEBT-TCCGS--TTT--TT-B-TT--HHHHHHHHHHT---T-EEEEEEECCHTT--
T ss_pred CHHHHHHHH----HHHHHcCCCEEEecc-ccccccccccccccccCCccCHHHHHHHHHHc---CCCEEEEEeCCcch--
Confidence 366677544 599999999998711 110 0 0111111234677888888765 6554 444322111
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEccCCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCce
Q 037393 216 RYMHGAATSSEVAVYAYAAAQVKKAMEVTHYLGGENYVFWGGREGYQSLLNTDMGREIDHMANFFESAAAYKKKIGFKGN 295 (503)
Q Consensus 216 rfk~GA~TnPD~~VRa~Ai~~vkraiDia~eLGa~~~v~WgGrEGydy~~qtD~~~~~d~l~e~l~~v~dya~~iG~~~~ 295 (503)
+.....++ ..+++...+++|...+.+ | -++.|-....+++.+.++.+++| +
T Consensus 100 ---------~~~~~~~~----~~~~f~~~~~~Gv~GvKi----d----F~~~d~Q~~v~~y~~i~~~AA~~--------~ 150 (273)
T PF10566_consen 100 ---------NVANLEKQ----LDEAFKLYAKWGVKGVKI----D----FMDRDDQEMVNWYEDILEDAAEY--------K 150 (273)
T ss_dssp ---------BHHHHHCC----HHHHHHHHHHCTEEEEEE----E------SSTSHHHHHHHHHHHHHHHHT--------T
T ss_pred ---------hhHhHHHH----HHHHHHHHHHcCCCEEee----C----cCCCCCHHHHHHHHHHHHHHHHc--------C
Confidence 11112222 378889999999987765 1 22346677788888888888877 3
Q ss_pred EEec-cCCCCCCC--CCccccHHHHHHHHHHhCCCCCceeeccc--cccc-----ccCCCHHHHHHHHHHcCCeeEEecC
Q 037393 296 LLIE-PKPQEPTK--HQYDWDAATAANFLRKYGLINDFKLNIEC--NHAT-----LSGHSCHHDIETARLNGLLGNIDAN 365 (503)
Q Consensus 296 ~~IE-PKP~EP~~--h~y~~dvgt~l~fl~~~gl~~~~gVniD~--gHa~-----lAG~n~ah~va~A~~~gkLg~ihlN 365 (503)
++|- .-+.-||. ++| || =+|-|. |... -.+.++.|.+.+.--+...|.+|..
T Consensus 151 LmvnfHg~~kPtG~~RTy----------------PN--~mT~EgVrG~E~~~~~~~~~~~p~h~~~lPFTR~l~GpmDyT 212 (273)
T PF10566_consen 151 LMVNFHGATKPTGLRRTY----------------PN--LMTREGVRGQEYNKWSGDGGNPPEHNTTLPFTRMLAGPMDYT 212 (273)
T ss_dssp -EEEETTS---TTHHHCS----------------TT--EEEE--S--GGGGGTT-TTS-HCCHHCTCCCTCCCCS-B---
T ss_pred cEEEecCCcCCCcccccC----------------cc--HHHHHHhhhhhhcccccCCCCCCcceeeccchhcCcCCcccC
Confidence 3332 23444443 222 11 122222 1111 2456777878888888899999987
Q ss_pred CCCCC
Q 037393 366 TGDPQ 370 (503)
Q Consensus 366 dg~~q 370 (503)
-|-..
T Consensus 213 Pg~f~ 217 (273)
T PF10566_consen 213 PGAFS 217 (273)
T ss_dssp ---SS
T ss_pred Chhcc
Confidence 76543
No 226
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=20.68 E-value=9.6e+02 Score=24.89 Aligned_cols=55 Identities=20% Similarity=0.123 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCC---------------CCCCCCCHHHHHHhHHHHHHHHHHHh
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRD---------------IAPDGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~D---------------l~P~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
++......-.|-+...+.|+++|.+|-.+ -.-.|-+++.+-+.+.+|++.+++..
T Consensus 149 I~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~v 218 (336)
T cd02932 149 IAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVW 218 (336)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHc
Confidence 45555566667778888999999997321 12357888888888888777776554
No 227
>PLN02849 beta-glucosidase
Probab=20.21 E-value=1.3e+02 Score=33.78 Aligned_cols=100 Identities=15% Similarity=0.161 Sum_probs=55.7
Q ss_pred cccccCccchhcCCccc-cccceeeeeccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhCC-ceecc
Q 037393 91 AFKWYNPEEVILGKKMK-DWMRFSVAFWHTFRGTGSDPFGVPTKSWPWEDGTNSMAMAKRRMRANFEFIDKLGV-DFWCF 168 (503)
Q Consensus 91 ~f~~y~~~~~i~gk~m~-~~lrFsv~~Wht~~~~g~DpFG~~T~~rpw~~~~d~~e~a~~r~~~afe~l~kLG~-~~~~f 168 (503)
.|++|..|-..+- .|. .+.|||+++ --+-. .|.+ ++ | +..-+-=++.|+.|.+-|+ |.||+
T Consensus 77 ~YhrY~eDI~Lm~-~lG~~aYRfSIsW-sRI~P-----~G~g----~v----N--~~gl~fY~~lid~l~~~GI~P~VTL 139 (503)
T PLN02849 77 GYHKYKEDVKLMV-ETGLDAFRFSISW-SRLIP-----NGRG----SV----N--PKGLQFYKNFIQELVKHGIEPHVTL 139 (503)
T ss_pred HHHhHHHHHHHHH-HcCCCeEEEeccH-HhcCc-----CCCC----CC----C--HHHHHHHHHHHHHHHHcCCeEEEee
Confidence 4556655544432 232 568999985 22222 2322 12 2 2222245567789999998 79999
Q ss_pred cCCCCCCCCCCHH----HHHHhHHHHHHHHHHHh-cCCcee-eeec
Q 037393 169 HDRDIAPDGETLK----EANANLDEVVALAKELQ-GTKVRP-LWGT 208 (503)
Q Consensus 169 HD~Dl~P~g~t~~----e~~~nl~~i~~~lk~l~-~tGvkl-~~~t 208 (503)
||-| .|.--.-+ .+.+.++..+++.+.+. ..|=+| .|+|
T Consensus 140 ~H~d-lP~~L~~~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk~WiT 184 (503)
T PLN02849 140 FHYD-HPQYLEDDYGGWINRRIIKDFTAYADVCFREFGNHVKFWTT 184 (503)
T ss_pred cCCC-CcHHHHHhcCCcCCchHHHHHHHHHHHHHHHhcCcCCEEEE
Confidence 9998 46421111 12345566666776666 544433 6887
No 228
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=20.17 E-value=6.5e+02 Score=26.82 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCceecccCCC----------C-----CCCCCCHHHHHHhHHHHHHHHHHHh
Q 037393 144 MAMAKRRMRANFEFIDKLGVDFWCFHDRD----------I-----APDGETLKEANANLDEVVALAKELQ 198 (503)
Q Consensus 144 ~e~a~~r~~~afe~l~kLG~~~~~fHD~D----------l-----~P~g~t~~e~~~nl~~i~~~lk~l~ 198 (503)
++......-+|-+...+.|+++|.+|--+ . .-+|-+++.+-+-+-+|++.+++..
T Consensus 145 I~~ii~~f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~v 214 (370)
T cd02929 145 IKRVRRWYVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAV 214 (370)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHc
Confidence 55555566667778888999999997554 1 1248899988888888887777664
No 229
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=20.03 E-value=3.6e+02 Score=27.59 Aligned_cols=79 Identities=14% Similarity=0.122 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHhCCceecccCCCCCCCCCCHHHHHHhHHHHHHHHHHHh-cCCc
Q 037393 125 SDPFGVPTKSWP-WEDGTNSMAMAKRRMRANFEFIDKLGVDFWCFHDRDIAPDGETLKEANANLDEVVALAKELQ-GTKV 202 (503)
Q Consensus 125 ~DpFG~~T~~rp-w~~~~d~~e~a~~r~~~afe~l~kLG~~~~~fHD~Dl~P~g~t~~e~~~nl~~i~~~lk~l~-~tGv 202 (503)
.|.|+.++.++| | .+|-..++.-+..++.-+.-.|+.=..+=+.-..|+..+... +.++++-+++.. +.|+
T Consensus 43 ~D~~~~~~~~~~~~---~~p~~~g~~av~~~~sDi~a~Ga~P~~~~~~l~~p~~~~~~~----l~~i~~Gi~~~~~~~g~ 115 (318)
T PRK05731 43 TDMLVEGVHFRPDW---SSPEDLGYKALAVNLSDLAAMGARPAAFLLALALPKDLDEAW----LEALADGLFELADRYGA 115 (318)
T ss_pred ecccccccCcCCCC---CCHHHHHHHHHHHHHHHHHHcCCCcceEEEEEEcCCCCCHHH----HHHHHHHHHHHHHHhCC
Confidence 477888887766 6 567778887788888888889986655545555676555443 455555555555 8899
Q ss_pred eeeeeccC
Q 037393 203 RPLWGTAQ 210 (503)
Q Consensus 203 kl~~~tan 210 (503)
.+..+..+
T Consensus 116 ~ivGG~t~ 123 (318)
T PRK05731 116 ELIGGDTT 123 (318)
T ss_pred eEECcccC
Confidence 98888655
Done!