BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037395
MKLRRQSKEAPGKGQMDEGIDSRSEVVSVDRDESRVPSICSCANRITPHAFDHGFILSGF
AEKDDQEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGG
A

High Scoring Gene Products

Symbol, full name Information P value
AT3G10950 protein from Arabidopsis thaliana 1.4e-07
AT3G60245 protein from Arabidopsis thaliana 4.8e-07
RpL37A
Ribosomal protein L37A
protein from Drosophila melanogaster 0.00072
rpl-43 gene from Caenorhabditis elegans 0.00072

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037395
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2085532 - symbol:AT3G10950 species:3702 "Arabi...   120  1.4e-07   1
TAIR|locus:505006406 - symbol:AT3G60245 species:3702 "Ara...   115  4.8e-07   1
FB|FBgn0261608 - symbol:RpL37A "Ribosomal protein L37A" s...    85  0.00072   1
WB|WBGene00004456 - symbol:rpl-43 species:6239 "Caenorhab...    85  0.00072   1


>TAIR|locus:2085532 [details] [associations]
            symbol:AT3G10950 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
            "translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
            evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
            evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
            InterPro:IPR002674 InterPro:IPR011331 InterPro:IPR011332
            Pfam:PF01780 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0006412 GO:GO:0003735 EMBL:AC009991 KO:K02921 GO:GO:0022625
            IPI:IPI00547833 RefSeq:NP_187706.1 UniGene:At.53262
            ProteinModelPortal:Q9SRK6 SMR:Q9SRK6 STRING:Q9SRK6 PaxDb:Q9SRK6
            EnsemblPlants:AT3G10950.1 GeneID:820266 KEGG:ath:AT3G10950
            TAIR:At3g10950 eggNOG:COG1997 HOGENOM:HOG000229493
            InParanoid:Q9SRK6 OMA:ISQHAEY PhylomeDB:Q9SRK6
            ProtClustDB:CLSN2684048 Genevestigator:Q9SRK6 GermOnline:AT3G10950
            Gene3D:2.20.25.30 SUPFAM:SSF57829 TIGRFAMs:TIGR00280 Uniprot:Q9SRK6
        Length = 92

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query:    97 KYAIKRKVVGIWSCKYCGKVKAGGA 121
             KY++KRKVVGIW CK CGKVKAGGA
Sbjct:    44 KYSVKRKVVGIWGCKDCGKVKAGGA 68


>TAIR|locus:505006406 [details] [associations]
            symbol:AT3G60245 species:3702 "Arabidopsis thaliana"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
            "translation" evidence=IEA;ISS] [GO:0042254 "ribosome biogenesis"
            evidence=ISS] [GO:0022625 "cytosolic large ribosomal subunit"
            evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
            InterPro:IPR002674 InterPro:IPR011331 InterPro:IPR011332
            Pfam:PF01780 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
            GO:GO:0006412 GO:GO:0003735 EMBL:AL163852 KO:K02921 GO:GO:0022625
            PIR:T49219 eggNOG:COG1997 HOGENOM:HOG000229493
            ProtClustDB:CLSN2684048 Gene3D:2.20.25.30 SUPFAM:SSF57829
            TIGRFAMs:TIGR00280 EMBL:AY117196 EMBL:AY080669 EMBL:AY088178
            IPI:IPI00523107 RefSeq:NP_567096.1 UniGene:At.43549
            ProteinModelPortal:Q8RXU5 SMR:Q8RXU5 STRING:Q8RXU5 PRIDE:Q8RXU5
            EnsemblPlants:AT3G60245.1 GeneID:825195 KEGG:ath:AT3G60245
            TAIR:At3g60245 InParanoid:Q8RXU5 OMA:ISTGIWQ PhylomeDB:Q8RXU5
            Genevestigator:Q8RXU5 GermOnline:AT3G60245 Uniprot:Q8RXU5
        Length = 92

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 20/25 (80%), Positives = 21/25 (84%)

Query:    97 KYAIKRKVVGIWSCKYCGKVKAGGA 121
             KY +KRK VGIW CK CGKVKAGGA
Sbjct:    44 KYGVKRKAVGIWGCKDCGKVKAGGA 68


>FB|FBgn0261608 [details] [associations]
            symbol:RpL37A "Ribosomal protein L37A" species:7227
            "Drosophila melanogaster" [GO:0006412 "translation" evidence=ISS]
            [GO:0003735 "structural constituent of ribosome" evidence=ISS]
            [GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS]
            [GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0007052
            "mitotic spindle organization" evidence=IMP] InterPro:IPR002674
            InterPro:IPR011331 InterPro:IPR011332 Pfam:PF01780 EMBL:AE014134
            GO:GO:0046872 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
            GO:GO:0000022 KO:K02921 eggNOG:COG1997 Gene3D:2.20.25.30
            SUPFAM:SSF57829 TIGRFAMs:TIGR00280 OMA:ISTGIWQ CTD:6168
            ChiTaRS:RpL37A GeneTree:ENSGT00390000016988 EMBL:AY071189
            EMBL:AY071725 RefSeq:NP_001188691.1 RefSeq:NP_524781.1
            RefSeq:NP_723060.1 UniGene:Dm.1819 ProteinModelPortal:Q9VMU4
            SMR:Q9VMU4 IntAct:Q9VMU4 MINT:MINT-943843 STRING:Q9VMU4
            PaxDb:Q9VMU4 PRIDE:Q9VMU4 EnsemblMetazoa:FBtr0079016
            EnsemblMetazoa:FBtr0079017 EnsemblMetazoa:FBtr0302570 GeneID:44783
            KEGG:dme:Dmel_CG5827 FlyBase:FBgn0261608 InParanoid:Q9VMU4
            OrthoDB:EOG48CZC2 PhylomeDB:Q9VMU4 GenomeRNAi:44783 NextBio:837609
            Bgee:Q9VMU4 GermOnline:CG5827 Uniprot:Q9VMU4
        Length = 92

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 16/25 (64%), Positives = 19/25 (76%)

Query:    97 KYAIKRKVVGIWSCKYCGKVKAGGA 121
             K ++KR VVGIWSCK C +  AGGA
Sbjct:    44 KDSMKRAVVGIWSCKRCKRTVAGGA 68


>WB|WBGene00004456 [details] [associations]
            symbol:rpl-43 species:6239 "Caenorhabditis elegans"
            [GO:0003735 "structural constituent of ribosome" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] InterPro:IPR002674 InterPro:IPR011331
            InterPro:IPR011332 Pfam:PF01780 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0046872 GO:GO:0006412
            GO:GO:0005840 EMBL:AL110490 GO:GO:0003735 KO:K02921 eggNOG:COG1997
            HOGENOM:HOG000229493 Gene3D:2.20.25.30 SUPFAM:SSF57829
            TIGRFAMs:TIGR00280 OMA:ISTGIWQ GeneTree:ENSGT00390000016988
            PIR:T26996 RefSeq:NP_496957.1 ProteinModelPortal:Q9U2A8 SMR:Q9U2A8
            DIP:DIP-27124N MINT:MINT-1077447 STRING:Q9U2A8 PaxDb:Q9U2A8
            EnsemblMetazoa:Y48B6A.2.1 EnsemblMetazoa:Y48B6A.2.2
            EnsemblMetazoa:Y48B6A.2.3 GeneID:175070 KEGG:cel:CELE_Y48B6A.2
            UCSC:Y48B6A.2.1 CTD:175070 WormBase:Y48B6A.2 InParanoid:Q9U2A8
            NextBio:886628 Uniprot:Q9U2A8
        Length = 91

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 16/25 (64%), Positives = 18/25 (72%)

Query:    97 KYAIKRKVVGIWSCKYCGKVKAGGA 121
             K A+KRK  GIW+C  C KV AGGA
Sbjct:    44 KEAMKRKATGIWNCAKCHKVVAGGA 68


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.456    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.48    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  153 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.74u 0.10s 12.84t   Elapsed:  00:00:01
  Total cpu time:  12.74u 0.10s 12.84t   Elapsed:  00:00:01
  Start:  Sat May 11 12:05:16 2013   End:  Sat May 11 12:05:17 2013

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