Query 037395
Match_columns 121
No_of_seqs 106 out of 218
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 20:14:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ffk_W Ribosomal protein L37AE 99.9 7.9E-23 2.7E-27 138.8 2.5 51 67-121 9-59 (73)
2 3jyw_9 60S ribosomal protein L 99.9 1.6E-23 5.5E-28 142.4 -1.1 52 66-121 7-58 (72)
3 3j21_i 50S ribosomal protein L 99.9 6.4E-23 2.2E-27 142.5 1.3 52 66-121 16-67 (83)
4 3iz5_m 60S ribosomal protein L 99.8 1.4E-22 4.7E-27 143.1 0.9 53 65-121 16-68 (92)
5 3izc_m 60S ribosomal protein R 99.8 1.8E-22 6.1E-27 142.7 0.9 53 65-121 16-68 (92)
6 4a17_Y RPL37A, 60S ribosomal p 99.8 3.9E-22 1.3E-26 143.7 1.3 53 65-121 16-68 (103)
7 3cc2_Z 50S ribosomal protein L 99.8 4.9E-21 1.7E-25 140.0 1.4 52 66-121 41-92 (116)
8 1vq8_Z 50S ribosomal protein L 99.7 1.5E-19 5E-24 123.8 1.4 51 67-121 9-59 (83)
9 3j21_g 50S ribosomal protein L 97.9 1E-06 3.5E-11 56.3 -0.3 24 89-116 14-37 (51)
10 3j20_Y 30S ribosomal protein S 94.8 0.016 5.5E-07 35.9 2.3 28 90-117 20-47 (50)
11 1dl6_A Transcription factor II 93.1 0.027 9.1E-07 35.4 0.9 30 90-119 12-42 (58)
12 2k4x_A 30S ribosomal protein S 92.0 0.058 2E-06 33.9 1.4 28 90-117 19-46 (55)
13 1pft_A TFIIB, PFTFIIBN; N-term 91.9 0.039 1.3E-06 32.7 0.5 29 90-118 6-35 (50)
14 3u50_C Telomerase-associated p 90.3 0.093 3.2E-06 39.2 1.3 26 90-116 43-68 (172)
15 1l1o_C Replication protein A 7 90.1 0.11 3.8E-06 37.6 1.6 27 90-117 44-72 (181)
16 3ga8_A HTH-type transcriptiona 86.2 1.1 3.8E-05 28.4 4.2 29 91-119 4-48 (78)
17 1vd4_A Transcription initiatio 85.6 0.16 5.4E-06 29.3 0.0 29 90-118 15-50 (62)
18 4gop_C Putative uncharacterize 85.2 0.28 9.5E-06 39.2 1.2 29 88-117 307-337 (444)
19 1d0q_A DNA primase; zinc-bindi 84.7 0.29 9.9E-06 32.6 1.0 26 90-115 38-66 (103)
20 1wii_A Hypothetical UPF0222 pr 83.3 1.4 4.9E-05 29.9 4.0 28 90-117 24-57 (85)
21 1qyp_A RNA polymerase II; tran 82.9 1.2 4E-05 27.0 3.1 30 89-118 15-54 (57)
22 1nui_A DNA primase/helicase; z 82.3 0.43 1.5E-05 35.0 1.2 27 90-116 15-42 (255)
23 1twf_L ABC10-alpha, DNA-direct 81.7 0.15 5.3E-06 33.5 -1.3 27 89-116 28-54 (70)
24 1gh9_A 8.3 kDa protein (gene M 80.4 0.5 1.7E-05 31.3 0.8 26 90-117 5-30 (71)
25 4bbr_M Transcription initiatio 80.2 0.67 2.3E-05 36.7 1.7 36 77-118 15-53 (345)
26 1ovx_A ATP-dependent CLP prote 79.2 0.26 8.8E-06 32.8 -0.9 24 90-113 19-46 (67)
27 3uk3_C Zinc finger protein 217 77.6 0.41 1.4E-05 25.8 -0.2 11 108-118 33-43 (57)
28 2ds5_A CLPX, ATP-dependent CLP 76.8 0.68 2.3E-05 29.0 0.6 24 90-113 12-39 (51)
29 2au3_A DNA primase; zinc ribbo 73.6 1 3.5E-05 35.8 1.0 26 90-115 35-63 (407)
30 2xzm_9 RPS31E; ribosome, trans 73.5 1.4 4.7E-05 33.4 1.7 29 90-118 114-142 (189)
31 2con_A RUH-035 protein, NIN on 73.3 1.4 4.8E-05 29.8 1.5 20 88-107 29-48 (79)
32 1bbo_A Human enhancer-binding 72.9 0.69 2.4E-05 24.9 -0.1 10 108-117 30-39 (57)
33 3k1f_M Transcription initiatio 72.8 1.1 3.9E-05 35.2 1.1 29 90-118 22-53 (197)
34 2drp_A Protein (tramtrack DNA- 71.8 0.79 2.7E-05 25.5 -0.0 12 107-118 40-51 (66)
35 3qt1_I DNA-directed RNA polyme 71.3 0.89 3E-05 32.6 0.2 28 90-117 25-56 (133)
36 3k7a_M Transcription initiatio 70.4 0.65 2.2E-05 36.3 -0.8 28 90-117 22-52 (345)
37 1x6e_A Zinc finger protein 24; 69.4 0.85 2.9E-05 26.1 -0.2 11 108-118 43-53 (72)
38 2lv2_A Insulinoma-associated p 68.8 0.93 3.2E-05 29.0 -0.2 29 90-118 29-67 (85)
39 2d9h_A Zinc finger protein 692 67.7 0.72 2.5E-05 26.6 -0.8 11 107-117 38-48 (78)
40 2wbt_A B-129; zinc finger; 2.7 65.2 0.74 2.5E-05 28.9 -1.2 31 88-118 73-111 (129)
41 2m0e_A Zinc finger and BTB dom 64.9 2.2 7.4E-05 19.2 0.8 9 90-98 3-11 (29)
42 2xzm_Z RPS21E; ribosome, trans 64.9 3.2 0.00011 29.6 1.9 34 34-69 26-59 (97)
43 4gzn_C ZFP-57, zinc finger pro 64.8 1.3 4.4E-05 26.6 -0.1 11 108-118 33-43 (60)
44 2m0f_A Zinc finger and BTB dom 64.7 2.4 8.1E-05 19.2 0.9 9 90-98 3-11 (29)
45 1x6h_A Transcriptional repress 64.7 0.89 3E-05 26.1 -0.8 9 90-98 48-56 (86)
46 2lce_A B-cell lymphoma 6 prote 64.6 1.4 4.9E-05 25.1 0.1 10 108-117 46-55 (74)
47 1x5w_A Zinc finger protein 64, 64.6 1.3 4.3E-05 25.1 -0.2 10 108-117 38-47 (70)
48 2adr_A ADR1; transcription reg 64.2 1.2 4E-05 24.3 -0.3 10 108-117 31-40 (60)
49 1a1h_A QGSR zinc finger peptid 64.0 1.7 5.8E-05 25.1 0.3 30 89-118 34-73 (90)
50 1znf_A 31ST zinc finger from X 63.8 2.5 8.6E-05 19.1 0.9 10 90-99 2-11 (27)
51 3u5c_f 40S ribosomal protein S 63.6 2.8 9.5E-05 30.0 1.4 29 90-118 119-149 (152)
52 2kvf_A Zinc finger and BTB dom 63.4 2.8 9.5E-05 19.2 1.0 9 90-98 4-12 (28)
53 2kmk_A Zinc finger protein GFI 62.8 1.5 5.1E-05 24.8 -0.1 48 71-118 7-68 (82)
54 1klr_A Zinc finger Y-chromosom 62.5 2.5 8.6E-05 19.2 0.7 10 90-99 3-12 (30)
55 1rik_A E6APC1 peptide; E6-bind 62.4 3 0.0001 19.0 1.0 9 90-98 3-11 (29)
56 2m0d_A Zinc finger and BTB dom 61.9 2.9 0.0001 18.9 0.9 9 90-98 4-12 (30)
57 2kvh_A Zinc finger and BTB dom 61.2 3.8 0.00013 18.7 1.3 8 90-97 4-11 (27)
58 1ard_A Yeast transcription fac 61.2 2.9 9.8E-05 19.0 0.8 10 90-99 3-12 (29)
59 3u5c_V S26, YS25, 40S ribosoma 60.0 4.7 0.00016 28.1 2.0 35 34-70 11-45 (87)
60 1lko_A Rubrerythrin all-iron(I 59.3 7.5 0.00026 28.2 3.1 20 100-119 148-167 (191)
61 2cot_A Zinc finger protein 435 59.3 1.9 6.4E-05 24.8 -0.1 10 108-117 47-56 (77)
62 2kdx_A HYPA, hydrogenase/ureas 58.8 9.4 0.00032 25.6 3.4 22 98-119 64-85 (119)
63 1paa_A Yeast transcription fac 58.8 3.2 0.00011 19.1 0.8 10 90-99 3-12 (30)
64 2elx_A Zinc finger protein 406 58.5 3.9 0.00013 19.6 1.1 10 90-99 8-17 (35)
65 2lvu_A Zinc finger and BTB dom 62.4 2.1 7.3E-05 19.5 0.0 11 90-100 3-13 (26)
66 2dlq_A GLI-kruppel family memb 57.5 2 6.8E-05 26.0 -0.2 48 71-118 41-105 (124)
67 1p7a_A BF3, BKLF, kruppel-like 56.9 3.6 0.00012 20.1 0.8 10 90-99 12-21 (37)
68 2els_A Zinc finger protein 406 56.6 4.1 0.00014 19.8 1.0 10 89-98 9-18 (36)
69 2csh_A Zinc finger protein 297 56.4 2.7 9.4E-05 25.4 0.3 30 89-118 37-76 (110)
70 2dmd_A Zinc finger protein 64, 56.2 2.6 8.8E-05 24.7 0.2 29 90-118 37-75 (96)
71 2elt_A Zinc finger protein 406 56.1 4.3 0.00015 19.6 1.0 11 89-99 9-19 (36)
72 2yt9_A Zinc finger-containing 56.0 2.4 8.3E-05 24.7 0.0 49 70-118 12-76 (95)
73 2ctu_A Zinc finger protein 483 55.6 0.41 1.4E-05 26.6 -3.3 28 90-117 19-49 (73)
74 2elr_A Zinc finger protein 406 55.5 4 0.00014 19.7 0.8 10 90-99 10-19 (36)
75 2ctd_A Zinc finger protein 512 55.3 1.3 4.6E-05 27.8 -1.3 10 108-117 63-72 (96)
76 1srk_A Zinc finger protein ZFP 55.2 4.7 0.00016 19.4 1.1 10 90-99 8-17 (35)
77 2lvt_A Zinc finger and BTB dom 59.9 2.6 8.8E-05 19.5 0.0 10 90-99 3-12 (29)
78 2kfq_A FP1; protein, de novo p 54.6 3.8 0.00013 19.9 0.6 9 90-98 3-11 (32)
79 2elp_A Zinc finger protein 406 54.0 4.9 0.00017 19.7 1.0 10 90-99 10-19 (37)
80 2elv_A Zinc finger protein 406 53.2 5.3 0.00018 19.4 1.1 10 90-99 10-19 (36)
81 2elq_A Zinc finger protein 406 51.9 5.5 0.00019 19.4 1.0 11 89-99 9-19 (36)
82 2kvg_A Zinc finger and BTB dom 51.8 7.6 0.00026 17.9 1.5 8 90-97 4-11 (27)
83 2i13_A AART; DNA binding, zinc 51.7 3.6 0.00012 27.3 0.3 10 108-117 134-143 (190)
84 2lvr_A Zinc finger and BTB dom 57.0 3.1 0.00011 19.0 0.0 11 90-100 4-14 (30)
85 1rim_A E6APC2 peptide; E6-bind 51.2 5.1 0.00017 19.7 0.8 9 90-98 3-11 (33)
86 3a43_A HYPD, hydrogenase nicke 50.9 13 0.00045 26.1 3.2 42 77-119 40-82 (139)
87 1llm_C Chimera of ZIF23-GCN4; 49.3 3.5 0.00012 24.2 -0.0 11 108-118 32-42 (88)
88 1njq_A Superman protein; zinc- 48.4 6.6 0.00023 19.6 1.0 10 90-99 7-16 (39)
89 3h0g_I DNA-directed RNA polyme 47.6 8.5 0.00029 26.2 1.7 29 90-118 73-111 (113)
90 2pk7_A Uncharacterized protein 46.0 7.2 0.00025 25.2 1.1 27 91-117 10-36 (69)
91 1tfi_A Transcriptional elongat 45.8 13 0.00044 22.6 2.1 28 90-117 10-47 (50)
92 2epv_A Zinc finger protein 268 45.4 8 0.00027 19.8 1.1 11 89-99 12-22 (44)
93 2emi_A Zinc finger protein 484 44.7 8.3 0.00029 19.8 1.1 10 89-98 12-21 (46)
94 2ytb_A Zinc finger protein 32; 44.3 7.4 0.00025 19.4 0.8 10 90-99 12-21 (42)
95 2elm_A Zinc finger protein 406 44.1 11 0.00038 18.7 1.4 8 90-97 10-17 (37)
96 1kbe_A Kinase suppressor of RA 43.9 16 0.00056 22.0 2.4 23 90-117 15-37 (49)
97 2epr_A POZ-, at HOOK-, and zin 43.3 7.3 0.00025 20.5 0.7 9 89-97 40-48 (48)
98 2enf_A Zinc finger protein 347 43.2 8.3 0.00028 19.8 0.9 10 90-99 13-22 (46)
99 2yu5_A Zinc finger protein 473 42.8 9.1 0.00031 19.5 1.0 10 90-99 13-22 (44)
100 4e2x_A TCAB9; kijanose, tetron 42.8 25 0.00087 26.4 3.8 15 104-118 50-64 (416)
101 2eos_A B-cell lymphoma 6 prote 42.8 8.4 0.00029 19.4 0.9 11 89-99 11-21 (42)
102 2yte_A Zinc finger protein 473 42.5 8.4 0.00029 19.2 0.8 10 90-99 11-20 (42)
103 2en2_A B-cell lymphoma 6 prote 42.4 11 0.00039 18.8 1.3 8 90-97 12-19 (42)
104 2emj_A Zinc finger protein 28 42.2 9.4 0.00032 19.7 1.0 11 89-99 12-22 (46)
105 2en3_A ZFP-95, zinc finger pro 42.1 9.4 0.00032 19.6 1.0 10 90-99 13-22 (46)
106 1vk6_A NADH pyrophosphatase; 1 41.9 8 0.00027 29.3 0.9 28 89-116 107-134 (269)
107 2eq1_A Zinc finger protein 347 41.7 8.2 0.00028 19.8 0.7 11 89-99 12-22 (46)
108 2em4_A Zinc finger protein 28 41.6 9.9 0.00034 19.6 1.1 11 89-99 12-22 (46)
109 2eoy_A Zinc finger protein 473 41.4 9.8 0.00034 19.6 1.0 10 90-99 13-22 (46)
110 2dmi_A Teashirt homolog 3; zin 41.3 4.4 0.00015 24.6 -0.5 48 71-118 25-91 (115)
111 2emb_A Zinc finger protein 473 40.9 10 0.00034 19.3 1.0 10 90-99 13-22 (44)
112 2elo_A Zinc finger protein 406 40.7 9.5 0.00032 18.5 0.8 8 90-97 10-17 (37)
113 2en7_A Zinc finger protein 268 40.6 8.6 0.00029 19.4 0.7 10 90-99 13-22 (44)
114 1k81_A EIF-2-beta, probable tr 40.4 20 0.00069 20.4 2.3 27 91-117 2-31 (36)
115 1dvp_A HRS, hepatocyte growth 40.0 12 0.00043 27.1 1.7 26 90-119 162-189 (220)
116 3iuf_A Zinc finger protein UBI 39.9 10 0.00036 20.3 1.0 10 89-98 7-16 (48)
117 2fc7_A ZZZ3 protein; structure 39.7 16 0.00055 23.9 2.1 40 68-115 4-44 (82)
118 2ep1_A Zinc finger protein 484 39.5 9.4 0.00032 19.5 0.7 10 90-99 13-22 (46)
119 2eon_A ZFP-95, zinc finger pro 39.4 10 0.00035 19.6 0.9 11 89-99 12-22 (46)
120 2emg_A Zinc finger protein 484 39.4 9.9 0.00034 19.5 0.8 10 90-99 13-22 (46)
121 2eoh_A Zinc finger protein 28 39.3 9.8 0.00034 19.6 0.8 11 89-99 12-22 (46)
122 2ytj_A Zinc finger protein 484 39.3 11 0.00039 19.2 1.1 11 89-99 12-22 (46)
123 2yti_A Zinc finger protein 347 39.0 9 0.00031 19.7 0.6 10 90-99 13-22 (46)
124 2eoo_A ZFP-95, zinc finger pro 39.0 11 0.00038 19.4 1.0 10 90-99 13-22 (46)
125 1yui_A GAGA-factor; complex (D 38.8 11 0.00038 20.3 1.0 10 89-98 24-33 (54)
126 3po3_S Transcription elongatio 38.8 13 0.00044 27.3 1.6 30 89-118 137-176 (178)
127 2ee8_A Protein ODD-skipped-rel 38.8 3 0.0001 25.0 -1.5 49 70-118 22-84 (106)
128 2el4_A Zinc finger protein 268 38.8 11 0.00038 19.2 0.9 10 90-99 13-22 (46)
129 2epc_A Zinc finger protein 32; 38.7 14 0.00048 18.3 1.3 8 90-97 12-19 (42)
130 2eoz_A Zinc finger protein 473 38.6 15 0.00051 18.8 1.5 8 90-97 13-20 (46)
131 2emz_A ZFP-95, zinc finger pro 38.6 10 0.00035 19.5 0.8 11 89-99 12-22 (46)
132 2gqj_A Zinc finger protein KIA 38.2 13 0.00045 22.5 1.3 28 71-98 30-63 (98)
133 2eov_A Zinc finger protein 484 38.1 11 0.00038 19.2 0.9 10 90-99 13-22 (46)
134 2lt7_A Transcriptional regulat 38.1 6.7 0.00023 26.1 -0.0 48 71-118 28-89 (133)
135 2eq2_A Zinc finger protein 347 38.0 9.7 0.00033 19.5 0.6 10 90-99 13-22 (46)
136 2yth_A Zinc finger protein 224 37.8 11 0.00038 19.4 0.9 10 90-99 13-22 (46)
137 2em6_A Zinc finger protein 224 37.7 11 0.00039 19.3 0.9 10 90-99 13-22 (46)
138 2enh_A Zinc finger protein 28 37.4 11 0.00038 19.4 0.8 10 90-99 13-22 (46)
139 1vfy_A Phosphatidylinositol-3- 37.4 16 0.00056 22.7 1.7 10 108-117 28-37 (73)
140 2eom_A ZFP-95, zinc finger pro 37.3 11 0.00038 19.5 0.8 11 89-99 12-22 (46)
141 2eop_A Zinc finger protein 268 37.3 11 0.00038 19.2 0.8 10 90-99 13-22 (46)
142 2ytp_A Zinc finger protein 484 37.0 15 0.00052 18.8 1.3 8 90-97 13-20 (46)
143 2emy_A Zinc finger protein 268 36.9 15 0.00052 18.7 1.3 8 90-97 13-20 (46)
144 2qkd_A Zinc finger protein ZPR 36.8 34 0.0012 28.6 4.0 29 89-117 12-51 (404)
145 2ytn_A Zinc finger protein 347 36.7 12 0.0004 19.2 0.8 10 90-99 13-22 (46)
146 1twf_I B12.6, DNA-directed RNA 36.4 34 0.0012 23.4 3.4 30 89-118 72-111 (122)
147 2jr6_A UPF0434 protein NMA0874 36.4 15 0.0005 23.7 1.4 27 91-117 10-36 (68)
148 2yts_A Zinc finger protein 484 36.2 16 0.00054 18.6 1.3 8 90-97 13-20 (46)
149 2yrj_A Zinc finger protein 473 36.2 16 0.00054 18.6 1.3 8 90-97 13-20 (46)
150 2en9_A Zinc finger protein 28 36.2 12 0.00041 19.2 0.8 11 89-99 12-22 (46)
151 2hf1_A Tetraacyldisaccharide-1 36.2 14 0.00049 23.7 1.3 27 91-117 10-36 (68)
152 2emk_A Zinc finger protein 28 36.2 12 0.00042 19.2 0.9 10 90-99 13-22 (46)
153 2eof_A Zinc finger protein 268 36.1 16 0.00056 18.2 1.3 8 90-97 13-20 (44)
154 2ytf_A Zinc finger protein 268 36.1 16 0.00055 18.6 1.3 8 90-97 13-20 (46)
155 1x4u_A Zinc finger, FYVE domai 36.0 23 0.0008 22.5 2.3 9 109-117 32-40 (84)
156 3h0g_L DNA-directed RNA polyme 36.0 6.5 0.00022 25.6 -0.3 27 89-117 21-48 (63)
157 2ept_A Zinc finger protein 32; 36.0 16 0.00056 18.1 1.3 8 90-97 11-18 (41)
158 1yuz_A Nigerythrin; rubrythrin 35.8 16 0.00056 26.9 1.8 22 89-115 171-194 (202)
159 2el5_A Zinc finger protein 268 35.8 16 0.00056 18.1 1.3 8 90-97 11-18 (42)
160 2eou_A Zinc finger protein 473 35.8 12 0.0004 19.1 0.7 10 90-99 13-22 (44)
161 2emp_A Zinc finger protein 347 35.7 14 0.00048 18.9 1.1 10 89-98 12-21 (46)
162 2enc_A Zinc finger protein 224 35.7 14 0.00048 18.9 1.1 11 89-99 12-22 (46)
163 2ghf_A ZHX1, zinc fingers and 35.7 8.9 0.0003 25.0 0.3 11 108-118 51-61 (102)
164 2epx_A Zinc finger protein 28 35.5 13 0.00044 18.9 0.9 10 90-99 13-22 (47)
165 1wfe_A Riken cDNA 2310008M20 p 35.4 18 0.0006 24.3 1.7 24 90-118 26-51 (86)
166 2eoq_A Zinc finger protein 224 35.4 12 0.00042 19.1 0.8 10 90-99 13-22 (46)
167 2epu_A Zinc finger protein 32; 35.3 18 0.00062 18.4 1.5 8 90-97 13-20 (45)
168 2eox_A Zinc finger protein 473 35.3 18 0.00063 18.2 1.5 10 108-117 13-22 (44)
169 2js4_A UPF0434 protein BB2007; 35.0 15 0.00051 23.7 1.3 27 91-117 10-36 (70)
170 2iyb_E Testin, TESS, TES; LIM 35.0 20 0.00068 20.9 1.8 31 90-120 3-45 (65)
171 2em5_A ZFP-95, zinc finger pro 34.9 15 0.0005 18.9 1.1 9 90-98 13-21 (46)
172 1fv5_A First zinc finger of U- 34.8 9.8 0.00033 20.9 0.3 9 90-98 9-17 (36)
173 2em8_A Zinc finger protein 224 34.8 15 0.00051 18.9 1.1 10 90-99 13-22 (46)
174 2ep3_A Zinc finger protein 484 34.7 17 0.00059 18.5 1.3 8 90-97 13-20 (46)
175 2yw8_A RUN and FYVE domain-con 34.7 19 0.00065 22.9 1.7 10 109-118 37-46 (82)
176 2ely_A Zinc finger protein 224 34.6 13 0.00046 19.0 0.9 11 89-99 12-22 (46)
177 4ayb_P DNA-directed RNA polyme 34.6 9.9 0.00034 24.2 0.4 27 69-99 7-33 (48)
178 2ytq_A Zinc finger protein 268 34.5 14 0.00047 19.0 0.9 10 90-99 13-22 (46)
179 2epz_A Zinc finger protein 28 34.5 13 0.00045 19.0 0.8 11 89-99 12-22 (46)
180 2em3_A Zinc finger protein 28 34.5 18 0.0006 18.5 1.3 8 90-97 13-20 (46)
181 2eq4_A Zinc finger protein 224 34.2 12 0.00042 19.0 0.7 10 90-99 13-22 (46)
182 2jny_A Uncharacterized BCR; st 34.2 15 0.00053 23.6 1.2 27 91-117 12-38 (67)
183 2lcq_A Putative toxin VAPC6; P 34.1 16 0.00054 25.3 1.4 11 91-102 150-160 (165)
184 1joc_A EEA1, early endosomal a 34.1 18 0.00063 24.9 1.7 26 90-119 70-97 (125)
185 2eow_A Zinc finger protein 347 34.0 18 0.00062 18.3 1.3 8 90-97 13-20 (46)
186 2ab3_A ZNF29; zinc finger prot 34.0 22 0.00074 15.7 1.5 9 109-117 4-14 (29)
187 1vq8_3 50S ribosomal protein L 34.0 9.4 0.00032 26.6 0.2 29 72-112 59-87 (92)
188 2yso_A ZFP-95, zinc finger pro 33.9 15 0.00052 18.7 1.0 11 89-99 12-22 (46)
189 2ysp_A Zinc finger protein 224 33.8 20 0.00068 18.2 1.5 10 108-117 13-22 (46)
190 2emh_A Zinc finger protein 484 33.7 19 0.00064 18.4 1.3 8 90-97 13-20 (46)
191 2d9k_A FLN29 gene product; zin 33.6 18 0.00062 21.7 1.4 30 71-102 23-55 (75)
192 1l8d_A DNA double-strand break 33.4 13 0.00044 24.2 0.8 10 89-98 47-56 (112)
193 2ema_A Zinc finger protein 347 33.3 19 0.00064 18.4 1.3 8 90-97 13-20 (46)
194 2emf_A Zinc finger protein 484 33.3 19 0.00064 18.4 1.3 8 90-97 13-20 (46)
195 2yrm_A B-cell lymphoma 6 prote 33.2 15 0.0005 18.8 0.9 10 90-99 11-20 (43)
196 2em0_A Zinc finger protein 224 33.0 14 0.00049 18.8 0.8 10 90-99 13-22 (46)
197 2en1_A Zinc finger protein 224 33.0 21 0.00072 18.2 1.5 10 108-117 13-22 (46)
198 2eod_A TNF receptor-associated 33.0 23 0.00077 19.7 1.7 9 90-98 37-46 (66)
199 2yto_A Zinc finger protein 484 32.7 19 0.00067 18.4 1.3 8 90-97 13-20 (46)
200 2ytr_A Zinc finger protein 347 32.7 13 0.00043 19.0 0.5 10 90-99 13-22 (46)
201 1h7b_A Anaerobic ribonucleotid 32.6 10 0.00035 32.8 0.3 62 51-115 500-566 (605)
202 2epw_A Zinc finger protein 268 32.1 20 0.00069 18.1 1.3 8 90-97 13-20 (46)
203 2eor_A Zinc finger protein 224 32.1 21 0.00071 18.1 1.3 8 90-97 13-20 (46)
204 1z2q_A LM5-1; membrane protein 32.1 20 0.00067 22.9 1.5 23 91-117 23-47 (84)
205 2em2_A Zinc finger protein 28 31.9 20 0.0007 18.3 1.3 8 90-97 13-20 (46)
206 1a7i_A QCRP2 (LIM1); LIM domai 31.8 30 0.001 20.7 2.2 31 90-120 8-47 (81)
207 2elz_A Zinc finger protein 224 31.6 16 0.00056 18.7 0.9 10 90-99 13-22 (46)
208 2emx_A Zinc finger protein 268 31.6 20 0.0007 18.0 1.3 8 90-97 11-18 (44)
209 2ytg_A ZFP-95, zinc finger pro 31.5 21 0.00073 18.1 1.3 8 90-97 13-20 (46)
210 2en8_A Zinc finger protein 224 31.4 22 0.00074 18.0 1.3 8 90-97 13-20 (46)
211 1pqv_S STP-alpha, transcriptio 31.3 34 0.0011 26.8 3.0 29 89-117 268-306 (309)
212 2eq0_A Zinc finger protein 347 31.3 22 0.00074 18.1 1.3 8 90-97 13-20 (46)
213 2eml_A Zinc finger protein 28 31.3 21 0.00073 18.1 1.3 8 90-97 13-20 (46)
214 3zyq_A Hepatocyte growth facto 31.2 23 0.00078 26.2 1.9 10 108-117 181-190 (226)
215 2ep2_A Zinc finger protein 484 31.1 22 0.00074 18.1 1.3 8 90-97 13-20 (46)
216 2eq3_A Zinc finger protein 347 31.1 15 0.00053 18.6 0.7 8 90-97 13-20 (46)
217 2ytk_A Zinc finger protein 347 31.1 22 0.00074 18.1 1.3 8 90-97 13-20 (46)
218 2eoj_A Zinc finger protein 268 30.9 17 0.00057 18.3 0.8 8 90-97 13-20 (44)
219 2em9_A Zinc finger protein 224 30.7 22 0.00076 18.0 1.3 8 90-97 13-20 (46)
220 2eme_A Zinc finger protein 473 30.6 22 0.00076 18.0 1.3 8 90-97 13-20 (46)
221 2ene_A Zinc finger protein 347 30.4 23 0.00077 18.0 1.3 8 90-97 13-20 (46)
222 2ytm_A Zinc finger protein 28 30.4 14 0.00049 19.0 0.5 10 90-99 13-22 (46)
223 2em7_A Zinc finger protein 224 30.3 23 0.00078 18.0 1.3 8 90-97 13-20 (46)
224 2ytt_A Zinc finger protein 473 30.1 15 0.00052 18.8 0.6 10 90-99 13-22 (46)
225 2yu8_A Zinc finger protein 347 30.1 23 0.00079 18.0 1.3 8 90-97 13-20 (46)
226 2j7j_A Transcription factor II 29.9 8.5 0.00029 21.6 -0.5 29 89-118 31-72 (85)
227 2jrp_A Putative cytoplasmic pr 29.6 25 0.00087 23.7 1.8 7 91-97 20-26 (81)
228 2emm_A ZFP-95, zinc finger pro 29.4 24 0.00082 17.8 1.3 8 90-97 13-20 (46)
229 6rxn_A Rubredoxin; electron tr 29.2 23 0.00078 21.5 1.3 12 107-118 4-15 (46)
230 2eps_A POZ-, at HOOK-, and zin 28.9 17 0.00059 19.6 0.7 28 71-98 18-50 (54)
231 2ep0_A Zinc finger protein 28 28.9 25 0.00085 17.9 1.3 8 90-97 13-20 (46)
232 2zjr_Z 50S ribosomal protein L 28.9 14 0.00049 23.3 0.4 20 90-114 31-50 (60)
233 2en6_A Zinc finger protein 268 28.8 27 0.00093 17.7 1.5 8 90-97 13-20 (46)
234 4dvc_A Thiol:disulfide interch 28.6 3.5 0.00012 26.7 -2.6 17 77-97 22-38 (184)
235 2el6_A Zinc finger protein 268 27.7 26 0.00088 17.9 1.3 8 90-97 13-20 (46)
236 2ytd_A Zinc finger protein 473 27.3 27 0.00094 17.7 1.3 8 90-97 13-20 (46)
237 2zkr_2 60S ribosomal protein L 26.8 14 0.0005 26.1 0.2 23 91-116 18-40 (97)
238 3pwf_A Rubrerythrin; non heme 26.8 33 0.0011 24.7 2.1 11 89-99 138-148 (170)
239 2jne_A Hypothetical protein YF 26.3 39 0.0013 24.1 2.3 26 90-117 33-58 (101)
240 3iz6_T 40S ribosomal protein S 25.1 5.3 0.00018 27.6 -2.3 41 34-77 11-51 (82)
241 2lk0_A RNA-binding protein 5; 25.0 24 0.00082 19.5 0.8 11 106-116 4-14 (32)
242 1wfk_A Zinc finger, FYVE domai 24.4 42 0.0014 21.8 2.1 9 89-97 25-33 (88)
243 1f2i_G Fusion of N-terminal 17 24.3 33 0.0011 19.0 1.3 11 108-118 50-60 (73)
244 3v2d_5 50S ribosomal protein L 24.1 17 0.00057 23.1 0.1 20 90-114 31-50 (60)
245 2eoe_A Zinc finger protein 347 23.8 25 0.00085 17.8 0.7 8 90-97 13-20 (46)
246 1sp2_A SP1F2; zinc finger, tra 23.6 28 0.00095 16.0 0.8 9 90-98 3-13 (31)
247 1zso_A Hypothetical protein; s 23.2 19 0.00065 26.6 0.2 35 78-116 30-79 (164)
248 3c5k_A HD6, histone deacetylas 23.1 47 0.0016 22.7 2.2 24 90-119 25-48 (109)
249 2c6a_A Ubiquitin-protein ligas 23.0 31 0.0011 21.6 1.2 11 106-116 12-22 (46)
250 2dlk_A Novel protein; ZF-C2H2 22.8 25 0.00086 19.6 0.6 28 71-98 46-77 (79)
251 3m7n_A Putative uncharacterize 22.8 28 0.00096 24.9 1.1 25 90-116 141-165 (179)
252 1zfo_A LAsp-1; LIM domain, zin 22.6 30 0.001 18.6 0.9 9 91-99 5-13 (31)
253 3t7l_A Zinc finger FYVE domain 22.5 39 0.0013 21.9 1.6 9 109-117 38-46 (90)
254 3u6p_A Formamidopyrimidine-DNA 22.5 55 0.0019 25.1 2.7 24 91-114 247-272 (273)
255 3w0f_A Endonuclease 8-like 3; 22.4 35 0.0012 27.2 1.6 25 91-116 253-282 (287)
256 3f6q_B LIM and senescent cell 22.3 54 0.0018 18.6 2.0 31 90-120 12-52 (72)
257 2fnf_X Putative RAS effector N 22.0 36 0.0012 21.4 1.3 24 90-117 36-59 (72)
258 1wg2_A Zinc finger (AN1-like) 22.0 25 0.00085 23.0 0.6 24 90-119 16-40 (64)
259 2kn9_A Rubredoxin; metalloprot 21.8 44 0.0015 22.5 1.8 12 107-118 27-38 (81)
260 1rfh_A RAS association (ralgds 21.7 40 0.0014 20.2 1.5 24 90-117 23-46 (59)
261 2epq_A POZ-, at HOOK-, and zin 21.5 30 0.001 17.6 0.7 8 90-97 11-18 (45)
262 1k3x_A Endonuclease VIII; hydr 21.3 61 0.0021 24.6 2.7 24 91-114 236-261 (262)
263 1s24_A Rubredoxin 2; electron 21.2 44 0.0015 22.7 1.7 13 106-118 34-46 (87)
264 1k82_A Formamidopyrimidine-DNA 21.0 61 0.0021 24.7 2.7 25 90-114 241-267 (268)
265 1va1_A Transcription factor SP 20.2 39 0.0013 16.5 1.0 9 90-98 9-19 (37)
266 1zfd_A SWI5; DNA binding motif 20.1 36 0.0012 15.7 0.8 10 90-99 4-15 (32)
No 1
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=99.86 E-value=7.9e-23 Score=138.81 Aligned_cols=51 Identities=24% Similarity=0.248 Sum_probs=49.8
Q ss_pred ccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 67 EGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 67 ~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
-|.++||.+++||+-||.+ |+|||||+++|||.++|||+|++|+++|||||
T Consensus 9 YG~slRK~vkkie~~q~~k----y~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGA 59 (73)
T 1ffk_W 9 YGLKIRVRVRDVEIKHKKK----YKCPVCGFPKLKRASTSIWVCGHCGYKIAGGA 59 (73)
T ss_pred cChhHHHHHHHHHHhcccC----ccCCCCCCceeEEEEeEEEECCCCCcEEECCC
Confidence 4999999999999999999 99999999999999999999999999999997
No 2
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.86 E-value=1.6e-23 Score=142.42 Aligned_cols=52 Identities=29% Similarity=0.409 Sum_probs=50.3
Q ss_pred cccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 66 QEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 66 ~~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
.-|+++||+++++|+-||++ |+|||||+++|||.|+|||+|++|+++|||||
T Consensus 7 RYG~slRK~vkkie~~q~~k----y~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGA 58 (72)
T 3jyw_9 7 RYGSSLRRQVKKLEIQQHAR----YDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGA 58 (72)
T ss_dssp SSCHHHHTTTHHHHHHHHSC----BCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSS
T ss_pred ccChhHHHHHHHHHHHhccC----ccCCCCCCceeEecCCCeEECCCCCCEEeCCc
Confidence 35899999999999999999 99999999999999999999999999999998
No 3
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.85 E-value=6.4e-23 Score=142.51 Aligned_cols=52 Identities=27% Similarity=0.412 Sum_probs=50.5
Q ss_pred cccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 66 QEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 66 ~~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
.-|+++||+++++|+-||++ |+|||||+++|||.++|||+|++|+++|||||
T Consensus 16 RYG~slRK~vkkie~~q~~k----y~CpfCGk~~vkR~a~GIW~C~kCg~~~AGGA 67 (83)
T 3j21_i 16 RYGLKIRRRVAAVEAKMRQK----HTCPVCGRKAVKRISTGIWQCQKCGATFAGGA 67 (83)
T ss_dssp CSCHHHHHHHHHHHHHHHSC----BCCSSSCSSCEEEEETTEEEETTTCCEEECCS
T ss_pred CcChhHHHHHHHHHHHhhcc----cCCCCCCCceeEecCcCeEEcCCCCCEEeCCc
Confidence 46899999999999999999 99999999999999999999999999999998
No 4
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=99.84 E-value=1.4e-22 Score=143.11 Aligned_cols=53 Identities=42% Similarity=0.649 Sum_probs=50.9
Q ss_pred ccccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 65 DQEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 65 ~~~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
..-|+++||+++++|+-||++ |+|||||+++|||.|+|||+|++|+++|||||
T Consensus 16 ~RYG~slRK~vkkie~~q~~k----y~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGGA 68 (92)
T 3iz5_m 16 TRYGASLRKQIKKMEVSQHSK----YFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGA 68 (92)
T ss_dssp TSSCHHHHHHHHHHHHHHHSC----BCCTTTCSSCBEEEETTEEECSSSCCEEECCS
T ss_pred CCcChHHHHHHHHHHHHHhcc----ccCcccCCCeeEecCcceEEcCCCCCEEeCCc
Confidence 346899999999999999999 99999999999999999999999999999998
No 5
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=99.84 E-value=1.8e-22 Score=142.69 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=50.9
Q ss_pred ccccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 65 DQEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 65 ~~~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
..-|+++||+++++|+-||++ |+|||||+++|||.|+|||+|++|+++|||||
T Consensus 16 ~RYG~slRK~vkkie~~q~~k----y~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGA 68 (92)
T 3izc_m 16 VRYGSSLRRQVKKLEIQQHAR----YDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGA 68 (92)
T ss_dssp SCSCHHHHHHHHHHHHHHHSC----CCCSSSCSSCCEEEETTEEECTTTCCEEECCS
T ss_pred CCcChhHHHHHHHHHHHHhcC----CcCCCCCCceeeecccceEEcCCCCCEEeCCc
Confidence 346899999999999999999 99999999999999999999999999999998
No 6
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=99.83 E-value=3.9e-22 Score=143.66 Aligned_cols=53 Identities=34% Similarity=0.444 Sum_probs=50.9
Q ss_pred ccccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 65 DQEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 65 ~~~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
-.-|+++||+++++|+-||.+ |+|||||+++|||.++|||+|++|+++|||||
T Consensus 16 tRYGaslRK~vkkIE~~q~ak----y~CpfCgk~~vKR~a~GIW~C~kCg~~~AGGA 68 (103)
T 4a17_Y 16 TRYGASLRKVVKKFEITQHAK----YGCPFCGKVAVKRAAVGIWKCKPCKKIIAGGA 68 (103)
T ss_dssp TTTCHHHHHHHHHHHHHHHSC----EECTTTCCEEEEEEETTEEEETTTTEEEECCS
T ss_pred CCCChhHHHHHHHHHHHhhcC----CCCCCCCCceeeecCcceEEcCCCCCEEeCCc
Confidence 346899999999999999999 99999999999999999999999999999998
No 7
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=99.80 E-value=4.9e-21 Score=139.99 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=50.4
Q ss_pred cccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 66 QEGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 66 ~~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
.-|.++||.+++||.-||.+ |+|||||+++|||.|+|||+|++|+++|||||
T Consensus 41 RYGaslRK~vkkiE~~q~ak----ytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGA 92 (116)
T 3cc2_Z 41 RYGRVSRRRVAEIESEMNED----HACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 92 (116)
T ss_dssp CSCHHHHHHHHHHHHHHHSC----EECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred ccchHHHHHHHHHHHHhccC----CcCCCCCCceeEecCceeEECCCCCCEEECCC
Confidence 45999999999999999999 99999999999999999999999999999997
No 8
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=99.75 E-value=1.5e-19 Score=123.82 Aligned_cols=51 Identities=20% Similarity=0.268 Sum_probs=49.6
Q ss_pred ccccccccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEecCC
Q 037395 67 EGMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAGGA 121 (121)
Q Consensus 67 ~g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAGGA 121 (121)
-|+++||.+++||+-||.. |+|||||++.|+|.++|||+|++|+++|||||
T Consensus 9 YG~~lRk~vk~ie~~q~~~----y~Cp~CG~~~v~r~atGiW~C~~Cg~~~agga 59 (83)
T 1vq8_Z 9 YGRVSRRRVAEIESEMNED----HACPNCGEDRVDRQGTGIWQCSYCDYKFTGGS 59 (83)
T ss_dssp SCHHHHHHHHHHHHHHHSC----EECSSSCCEEEEEEETTEEEETTTCCEEECCS
T ss_pred cchHHHHHHHHHHHhcccc----CcCCCCCCcceeccCCCeEECCCCCCEecCCE
Confidence 4899999999999999998 99999999999999999999999999999997
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.94 E-value=1e-06 Score=56.29 Aligned_cols=24 Identities=17% Similarity=0.071 Sum_probs=22.2
Q ss_pred eeecccCCCcceEEeEEEEeeeCCCCce
Q 037395 89 VAWGSWNYKYAIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 89 ~htCPFCGK~kVKR~AVGIWkCkkCgkt 116 (121)
+|.||.||.. .++|||+|++||++
T Consensus 14 k~iCpkC~a~----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 14 KYVCLRCGAT----NPWGAKKCRKCGYK 37 (51)
T ss_dssp EEECTTTCCE----ECTTCSSCSSSSSC
T ss_pred CccCCCCCCc----CCCCceecCCCCCc
Confidence 4999999985 99999999999987
No 10
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.80 E-value=0.016 Score=35.90 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=23.3
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
-.||.||...+-...-..|.|.+||.|.
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 4599999977666667889999999986
No 11
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=93.09 E-value=0.027 Score=35.38 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.4
Q ss_pred eecccCCCcc-eEEeEEEEeeeCCCCceEec
Q 037395 90 AWGSWNYKYA-IKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 90 htCPFCGK~k-VKR~AVGIWkCkkCgktfAG 119 (121)
..||.||... +.-.+.|.+.|..||.+++-
T Consensus 12 ~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e 42 (58)
T 1dl6_A 12 VTCPNHPDAILVEDYRAGDMICPECGLVVGD 42 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCCEECC
T ss_pred ccCcCCCCCceeEeCCCCeEEeCCCCCEEec
Confidence 4799999854 45558899999999998864
No 12
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=91.97 E-value=0.058 Score=33.90 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=21.2
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
..||.||...+=-...+-|.|.+|+++.
T Consensus 19 ~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 19 RFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 5799999865422335789999999985
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=91.92 E-value=0.039 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=22.7
Q ss_pred eecccCCCcc-eEEeEEEEeeeCCCCceEe
Q 037395 90 AWGSWNYKYA-IKRKVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~k-VKR~AVGIWkCkkCgktfA 118 (121)
..||.||... +.-.+.|-+.|..||.++.
T Consensus 6 ~~CP~C~~~~l~~d~~~gelvC~~CG~v~~ 35 (50)
T 1pft_A 6 KVCPACESAELIYDPERGEIVCAKCGYVIE 35 (50)
T ss_dssp CSCTTTSCCCEEEETTTTEEEESSSCCBCC
T ss_pred EeCcCCCCcceEEcCCCCeEECcccCCccc
Confidence 5799999844 4445779999999998764
No 14
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=90.30 E-value=0.093 Score=39.17 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=21.3
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCce
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgkt 116 (121)
.-||-|.|..+ ....|.|.|.+|++.
T Consensus 43 ~ACp~CnKKV~-~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVL-KYHGDSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEE-EETTTEEEETTTTEE
T ss_pred hhchhhCCEee-eCCCCeEECCCCCCC
Confidence 56889987655 567899999999986
No 15
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=90.12 E-value=0.11 Score=37.63 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=21.8
Q ss_pred eeccc--CCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSW--NYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPF--CGK~kVKR~AVGIWkCkkCgktf 117 (121)
.-||- |.|.. .-..-|.|.|.+|++++
T Consensus 44 ~aC~~~~CnKKv-~~~~~g~~~CekC~~~~ 72 (181)
T 1l1o_C 44 QACPTQDCNKKV-IDQQNGLYRCEKCDTEF 72 (181)
T ss_dssp EBCCSTTCCCBC-EEETTTEEEETTTTEEE
T ss_pred CCCCchhcCCcc-ccCCCCeEECCCCCCcC
Confidence 56898 98864 45677999999999875
No 16
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=86.22 E-value=1.1 Score=28.36 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=20.5
Q ss_pred ecccCCCcceEE----------------eEEEEeeeCCCCceEec
Q 037395 91 WGSWNYKYAIKR----------------KVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 91 tCPFCGK~kVKR----------------~AVGIWkCkkCgktfAG 119 (121)
+||+||...+.+ ..|=-|.|..||..+..
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~ 48 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN 48 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence 699998753322 13456999999988754
No 17
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=85.59 E-value=0.16 Score=29.31 Aligned_cols=29 Identities=10% Similarity=0.041 Sum_probs=17.2
Q ss_pred eecccCCCcc-----eEEeEE--EEeeeCCCCceEe
Q 037395 90 AWGSWNYKYA-----IKRKVV--GIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~k-----VKR~AV--GIWkCkkCgktfA 118 (121)
|.|+.||+.- ++|.-+ .-+.|..|++.|.
T Consensus 15 ~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~ 50 (62)
T 1vd4_A 15 FKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVE 50 (62)
T ss_dssp EECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCE
T ss_pred ccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccc
Confidence 6778887741 222222 3477888887764
No 18
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=85.16 E-value=0.28 Score=39.18 Aligned_cols=29 Identities=14% Similarity=0.241 Sum_probs=22.5
Q ss_pred ceeeccc--CCCcceEEeEEEEeeeCCCCceE
Q 037395 88 CVAWGSW--NYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 88 ~~htCPF--CGK~kVKR~AVGIWkCkkCgktf 117 (121)
+-.-||. |+|. |....-|.|.|.+|++++
T Consensus 307 ~Y~aC~~~~C~kk-v~~~~~g~~~C~~C~~~~ 337 (444)
T 4gop_C 307 YYTACASEGCNKK-VNLDHENNWRCEKCDRSY 337 (444)
T ss_dssp EEEECCSTTCCCB-EEECTTSCEEETTTTEEE
T ss_pred EEccCCcccCCCc-cccCCCccEECCCCCCcC
Confidence 3467999 9885 445667899999999875
No 19
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=84.68 E-value=0.29 Score=32.57 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=18.7
Q ss_pred eecccCCCc--ceE-EeEEEEeeeCCCCc
Q 037395 90 AWGSWNYKY--AIK-RKVVGIWSCKYCGK 115 (121)
Q Consensus 90 htCPFCGK~--kVK-R~AVGIWkCkkCgk 115 (121)
+.||||+-. +++ ....|+|+|-.||+
T Consensus 38 ~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~ 66 (103)
T 1d0q_A 38 GLCPFHGEKTPSFSVSPEKQIFHCFGCGA 66 (103)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred EECCCCCCCCCcEEEEcCCCEEEECCCCC
Confidence 689999743 332 22458999999995
No 20
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=83.35 E-value=1.4 Score=29.88 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.2
Q ss_pred eecccCCCc-c--eEE---eEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKY-A--IKR---KVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~-k--VKR---~AVGIWkCkkCgktf 117 (121)
.+||||+.. + |+. ..+|.=.|+.|+..+
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 579999988 3 333 369999999999766
No 21
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=82.93 E-value=1.2 Score=26.96 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=22.1
Q ss_pred eeecccCCCcceE------E----eEEEEeeeCCCCceEe
Q 037395 89 VAWGSWNYKYAIK------R----KVVGIWSCKYCGKVKA 118 (121)
Q Consensus 89 ~htCPFCGK~kVK------R----~AVGIWkCkkCgktfA 118 (121)
...||.||...+. | ..+=++.|.+||.++.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR 54 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEec
Confidence 3689999987543 1 1255799999999875
No 22
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=82.33 E-value=0.43 Score=35.00 Aligned_cols=27 Identities=15% Similarity=-0.150 Sum_probs=18.2
Q ss_pred eecccCCCc-ceEEeEEEEeeeCCCCce
Q 037395 90 AWGSWNYKY-AIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 90 htCPFCGK~-kVKR~AVGIWkCkkCgkt 116 (121)
-.||.||.. ...--..|-|.|.+||..
T Consensus 15 ~~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 15 IPCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp ECCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred CcCCCCCCCCCceEeCCCCeecccCCCc
Confidence 469999984 322112345999999975
No 23
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=81.73 E-value=0.15 Score=33.51 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=18.6
Q ss_pred eeecccCCCcceEEeEEEEeeeCCCCce
Q 037395 89 VAWGSWNYKYAIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 89 ~htCPFCGK~kVKR~AVGIWkCkkCgkt 116 (121)
.|.|+.||...-....-.| +|+.||..
T Consensus 28 ~Y~C~~CG~~~e~~~~d~i-rCp~CG~R 54 (70)
T 1twf_L 28 KYICAECSSKLSLSRTDAV-RCKDCGHR 54 (70)
T ss_dssp CEECSSSCCEECCCTTSTT-CCSSSCCC
T ss_pred EEECCCCCCcceeCCCCCc-cCCCCCce
Confidence 4899999998422222334 89999974
No 24
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=80.41 E-value=0.5 Score=31.25 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=19.7
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
..|| ||...+-+...--=+|. ||+++
T Consensus 5 v~C~-C~~~~~~~~~~kT~~C~-CG~~~ 30 (71)
T 1gh9_A 5 FRCD-CGRALYSREGAKTRKCV-CGRTV 30 (71)
T ss_dssp EEET-TSCCEEEETTCSEEEET-TTEEE
T ss_pred EECC-CCCEEEEcCCCcEEECC-CCCee
Confidence 5788 99987766665656787 99876
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=80.23 E-value=0.67 Score=36.73 Aligned_cols=36 Identities=25% Similarity=0.245 Sum_probs=24.5
Q ss_pred chhhhhhhhhcceeecccCCC---cceEEeEEEEeeeCCCCceEe
Q 037395 77 NPALMFYFVFACVAWGSWNYK---YAIKRKVVGIWSCKYCGKVKA 118 (121)
Q Consensus 77 ~~~lm~~~~~~~~htCPFCGK---~kVKR~AVGIWkCkkCgktfA 118 (121)
.|.|+. ..+||.||. ..|.....|--.|..||.++.
T Consensus 15 ~~~l~~------~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~ 53 (345)
T 4bbr_M 15 GPNLNI------VLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp -------------CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEE
T ss_pred Cccccc------CCcCCCCCCCCCceeEECCCCcEEeCCCCCCcc
Confidence 455654 357999996 346788999999999998874
No 26
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=79.16 E-value=0.26 Score=32.82 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=17.1
Q ss_pred eecccCCCcc--eEEeEEE--EeeeCCC
Q 037395 90 AWGSWNYKYA--IKRKVVG--IWSCKYC 113 (121)
Q Consensus 90 htCPFCGK~k--VKR~AVG--IWkCkkC 113 (121)
..|+||||.. |++.-.| +.-|..|
T Consensus 19 ~~CSFCGK~e~eV~~LIaGpgvyICdeC 46 (67)
T 1ovx_A 19 LYCSFCGKSQHEVRKLIAGPSVYICDEC 46 (67)
T ss_dssp CCCTTTCCCTTTSSSEEECSSCEEEHHH
T ss_pred cEecCCCCCHHHHcccCCCCCCChhHHH
Confidence 4699999986 7776544 5667655
No 27
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=77.65 E-value=0.41 Score=25.85 Aligned_cols=11 Identities=27% Similarity=0.990 Sum_probs=6.5
Q ss_pred eeeCCCCceEe
Q 037395 108 WSCKYCGKVKA 118 (121)
Q Consensus 108 WkCkkCgktfA 118 (121)
+.|..|++.|.
T Consensus 33 ~~C~~C~~~f~ 43 (57)
T 3uk3_C 33 YKCEFCEYAAA 43 (57)
T ss_dssp EECSSSSCEES
T ss_pred cCCCCCcchhC
Confidence 56666666553
No 28
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=76.79 E-value=0.68 Score=28.95 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=16.8
Q ss_pred eecccCCCcc--eEEeEEE--EeeeCCC
Q 037395 90 AWGSWNYKYA--IKRKVVG--IWSCKYC 113 (121)
Q Consensus 90 htCPFCGK~k--VKR~AVG--IWkCkkC 113 (121)
..|+||||.. |++.-.| +.-|..|
T Consensus 12 ~~CSFCGk~~~ev~~LIaGpgv~IC~eC 39 (51)
T 2ds5_A 12 LYCSFCGKSQHEVRKLIAGPSVYICDEC 39 (51)
T ss_dssp CBCTTTCCBTTTSSCEEECSSCEEEHHH
T ss_pred cEecCCCCCHHHhcccCCCCCCEehHHH
Confidence 4699999986 7777544 4566554
No 29
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=73.56 E-value=1 Score=35.82 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=18.1
Q ss_pred eecccCCCc--ce-EEeEEEEeeeCCCCc
Q 037395 90 AWGSWNYKY--AI-KRKVVGIWSCKYCGK 115 (121)
Q Consensus 90 htCPFCGK~--kV-KR~AVGIWkCkkCgk 115 (121)
..||||+-. ++ -....|+|+|-.||+
T Consensus 35 ~~CPfh~ektpSf~V~~~k~~~~CFgCg~ 63 (407)
T 2au3_A 35 TNCPFHPDDTPSFYVSPSKQIFKCFGCGV 63 (407)
T ss_dssp ECCSSSCCSSCCEEEETTTTEEEETTTCC
T ss_pred eeCcCCCCCCCeEEEECCCCEEEECCCCC
Confidence 579999743 22 123458999999994
No 30
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=73.55 E-value=1.4 Score=33.38 Aligned_cols=29 Identities=10% Similarity=-0.144 Sum_probs=22.4
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceEe
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktfA 118 (121)
..||.||.-.+=..--.=|+|.+|+.|+.
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~~CGkC~~t~~ 142 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRHYCGKCHLTLK 142 (189)
T ss_dssp EECSTTCSSCEEEECSSCEEETTTCCCBC
T ss_pred ccCCccCCCccccCccCCCccCCceeEEE
Confidence 67999997754445556799999999863
No 31
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=73.31 E-value=1.4 Score=29.75 Aligned_cols=20 Identities=15% Similarity=0.058 Sum_probs=17.2
Q ss_pred ceeecccCCCcceEEeEEEE
Q 037395 88 CVAWGSWNYKYAIKRKVVGI 107 (121)
Q Consensus 88 ~~htCPFCGK~kVKR~AVGI 107 (121)
-++.||.||...++|+++-+
T Consensus 29 ~k~FCp~CGn~TL~Rvsvsv 48 (79)
T 2con_A 29 NRVFCGHCGNKTLKKVSVTI 48 (79)
T ss_dssp SCCSCSSSCCSCCEEEECBC
T ss_pred ccccccccCcccceEEEEEE
Confidence 46889999999999999754
No 32
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=72.87 E-value=0.69 Score=24.91 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=5.7
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 30 ~~C~~C~~~f 39 (57)
T 1bbo_A 30 YHCTYCNFSF 39 (57)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5555565555
No 33
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=72.78 E-value=1.1 Score=35.24 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=24.0
Q ss_pred eecccCCCc---ceEEeEEEEeeeCCCCceEe
Q 037395 90 AWGSWNYKY---AIKRKVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~---kVKR~AVGIWkCkkCgktfA 118 (121)
..||.||.. .+.....|-..|..||.++.
T Consensus 22 ~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred eECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 479999983 46777899999999998763
No 34
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=71.77 E-value=0.79 Score=25.49 Aligned_cols=12 Identities=25% Similarity=0.791 Sum_probs=6.8
Q ss_pred EeeeCCCCceEe
Q 037395 107 IWSCKYCGKVKA 118 (121)
Q Consensus 107 IWkCkkCgktfA 118 (121)
.+.|..|++.|.
T Consensus 40 ~~~C~~C~k~f~ 51 (66)
T 2drp_A 40 VYPCPFCFKEFT 51 (66)
T ss_dssp CEECTTTCCEES
T ss_pred CeECCCCCCccC
Confidence 356666666553
No 35
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=71.33 E-value=0.89 Score=32.58 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=21.2
Q ss_pred eecccCCCcceEEe----EEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRK----VVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~----AVGIWkCkkCgktf 117 (121)
..||.||....-+. ..-+|.|+.|+++.
T Consensus 25 ~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 25 RFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred eeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 35999999864443 35589999999875
No 36
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=70.36 E-value=0.65 Score=36.34 Aligned_cols=28 Identities=25% Similarity=0.254 Sum_probs=24.0
Q ss_pred eecccCCCc---ceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKY---AIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~---kVKR~AVGIWkCkkCgktf 117 (121)
..||.||.. .+...+.|-..|..||.++
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 469999995 5677889999999999876
No 37
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=69.42 E-value=0.85 Score=26.12 Aligned_cols=11 Identities=36% Similarity=0.911 Sum_probs=6.3
Q ss_pred eeeCCCCceEe
Q 037395 108 WSCKYCGKVKA 118 (121)
Q Consensus 108 WkCkkCgktfA 118 (121)
+.|..|++.|.
T Consensus 43 ~~C~~C~~~f~ 53 (72)
T 1x6e_A 43 YKCLECGKAFS 53 (72)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 55666666553
No 38
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=68.84 E-value=0.93 Score=28.95 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=17.5
Q ss_pred eecccCCCcceE--------EeEE--EEeeeCCCCceEe
Q 037395 90 AWGSWNYKYAIK--------RKVV--GIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~kVK--------R~AV--GIWkCkkCgktfA 118 (121)
|+|+.|||.-.. |.-+ -.+.|..|+++|.
T Consensus 29 h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 29 HLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp EECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred EECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeC
Confidence 778888775321 1212 2477888888774
No 39
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.69 E-value=0.72 Score=26.61 Aligned_cols=11 Identities=36% Similarity=1.071 Sum_probs=6.1
Q ss_pred EeeeCCCCceE
Q 037395 107 IWSCKYCGKVK 117 (121)
Q Consensus 107 IWkCkkCgktf 117 (121)
.+.|..|++.|
T Consensus 38 ~~~C~~C~k~f 48 (78)
T 2d9h_A 38 RFPCEFCGKRF 48 (78)
T ss_dssp CEECTTTCCEE
T ss_pred ccCCCCCCchh
Confidence 35555555555
No 40
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=65.24 E-value=0.74 Score=28.88 Aligned_cols=31 Identities=10% Similarity=-0.109 Sum_probs=20.6
Q ss_pred ceeecccCCCcceEEe--------EEEEeeeCCCCceEe
Q 037395 88 CVAWGSWNYKYAIKRK--------VVGIWSCKYCGKVKA 118 (121)
Q Consensus 88 ~~htCPFCGK~kVKR~--------AVGIWkCkkCgktfA 118 (121)
=.|.|+.|||.-..+. -..-+.|..|++.|+
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCS
T ss_pred CCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccC
Confidence 4588999998632111 034488999998875
No 41
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=64.87 E-value=2.2 Score=19.24 Aligned_cols=9 Identities=11% Similarity=-0.373 Sum_probs=6.9
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.||+.
T Consensus 3 ~~C~~C~~~ 11 (29)
T 2m0e_A 3 HKCPHCDKK 11 (29)
T ss_dssp CCCSSCCCC
T ss_pred CcCCCCCcc
Confidence 678888875
No 42
>2xzm_Z RPS21E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Z
Probab=64.87 E-value=3.2 Score=29.56 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=29.7
Q ss_pred CCCCcccccccccCccccccceeecccccccccccc
Q 037395 34 SRVPSICSCANRITPHAFDHGFILSGFAEKDDQEGM 69 (121)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 69 (121)
--+|--||=.|||. +|-||+-|---+++-|+. |.
T Consensus 26 LYiPRKCSaTNRiI-~AKDHaSVQInIa~vd~~-G~ 59 (97)
T 2xzm_Z 26 AYLPRKCDWSNKLI-FSNDQSSVQIAIAEVGEN-GQ 59 (97)
T ss_dssp SSCCCBCTTTCCBC-CSSCTTCEEEEEEEECSS-SC
T ss_pred EeccccccccCCcc-ccCCceeEEEEhhhcCcc-cc
Confidence 47999999999997 589999999999998876 64
No 43
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=64.81 E-value=1.3 Score=26.58 Aligned_cols=11 Identities=45% Similarity=0.794 Sum_probs=6.3
Q ss_pred eeeCCCCceEe
Q 037395 108 WSCKYCGKVKA 118 (121)
Q Consensus 108 WkCkkCgktfA 118 (121)
+.|..|++.|.
T Consensus 33 ~~C~~C~k~F~ 43 (60)
T 4gzn_C 33 RSCPECGKCFR 43 (60)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCCCcC
Confidence 55666666553
No 44
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=64.73 E-value=2.4 Score=19.21 Aligned_cols=9 Identities=11% Similarity=-0.569 Sum_probs=6.6
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.||+.
T Consensus 3 ~~C~~C~k~ 11 (29)
T 2m0f_A 3 LKCRECGKQ 11 (29)
T ss_dssp EECTTTSCE
T ss_pred ccCCCCCCc
Confidence 678888775
No 45
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.67 E-value=0.89 Score=26.11 Aligned_cols=9 Identities=22% Similarity=-0.466 Sum_probs=4.4
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.|++.
T Consensus 48 ~~C~~C~~~ 56 (86)
T 1x6h_A 48 FVCSKCGKT 56 (86)
T ss_dssp EECSSSCCE
T ss_pred eECCCCCCh
Confidence 455555543
No 46
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=64.64 E-value=1.4 Score=25.13 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=5.8
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 46 ~~C~~C~k~f 55 (74)
T 2lce_A 46 YRCNICGAQF 55 (74)
T ss_dssp EECTTTCCEE
T ss_pred EECCCCCchh
Confidence 5566666555
No 47
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.56 E-value=1.3 Score=25.11 Aligned_cols=10 Identities=30% Similarity=0.986 Sum_probs=5.8
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 38 ~~C~~C~~~f 47 (70)
T 1x5w_A 38 FKCNYCSFDT 47 (70)
T ss_dssp EECSSSSCEE
T ss_pred EeCCCCCCcc
Confidence 5566665555
No 48
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=64.24 E-value=1.2 Score=24.31 Aligned_cols=10 Identities=20% Similarity=0.876 Sum_probs=4.6
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 31 ~~C~~C~~~f 40 (60)
T 2adr_A 31 YPCGLCNRAF 40 (60)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCCcc
Confidence 4444444444
No 49
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=63.97 E-value=1.7 Score=25.09 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=19.1
Q ss_pred eeecccCCCcceE-----E-----eEEEEeeeCCCCceEe
Q 037395 89 VAWGSWNYKYAIK-----R-----KVVGIWSCKYCGKVKA 118 (121)
Q Consensus 89 ~htCPFCGK~kVK-----R-----~AVGIWkCkkCgktfA 118 (121)
.|.|+.|++.-.. + .+...+.|..|++.|+
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73 (90)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence 3788888875321 1 1233588988988875
No 50
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=63.76 E-value=2.5 Score=19.07 Aligned_cols=10 Identities=0% Similarity=-0.462 Sum_probs=7.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 2 ~~C~~C~k~f 11 (27)
T 1znf_A 2 YKCGLCERSF 11 (27)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCCCCCcC
Confidence 6788888753
No 51
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=63.55 E-value=2.8 Score=30.00 Aligned_cols=29 Identities=14% Similarity=-0.095 Sum_probs=20.9
Q ss_pred eeccc--CCCcceEEeEEEEeeeCCCCceEe
Q 037395 90 AWGSW--NYKYAIKRKVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPF--CGK~kVKR~AVGIWkCkkCgktfA 118 (121)
..||. ||.-.+=-.----|.|.+|++|+.
T Consensus 119 ~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 119 RECSNPTCGAGVFLANHKDRLYCGKCHSVYK 149 (152)
T ss_dssp CBCCSTTSCSSSBEEECSSCEEESSSSSCCE
T ss_pred CcCCCccCCCceEecccCCCcccCCCceEEE
Confidence 67999 998543333334699999999874
No 52
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=63.38 E-value=2.8 Score=19.19 Aligned_cols=9 Identities=22% Similarity=-0.452 Sum_probs=7.0
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.|||.
T Consensus 4 ~~C~~C~k~ 12 (28)
T 2kvf_A 4 YSCSVCGKR 12 (28)
T ss_dssp EECSSSCCE
T ss_pred ccCCCCCcc
Confidence 678888875
No 53
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=62.80 E-value=1.5 Score=24.79 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=29.9
Q ss_pred ccccccch-hhhhhhhh---cceeecccCCCcceEE----------eEEEEeeeCCCCceEe
Q 037395 71 CWKPFVNP-ALMFYFVF---ACVAWGSWNYKYAIKR----------KVVGIWSCKYCGKVKA 118 (121)
Q Consensus 71 ~~k~~~~~-~lm~~~~~---~~~htCPFCGK~kVKR----------~AVGIWkCkkCgktfA 118 (121)
|-+.|.+. .|..|... .-.|.|+.|++.-..+ .....+.|..|++.|.
T Consensus 7 C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 7 CGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68 (82)
T ss_dssp SCCEESSHHHHHHHHHHHHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEES
T ss_pred CcccccCchhHHHHHHHcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhC
Confidence 45555544 35555442 2358999999864221 1235689999999885
No 54
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=62.46 E-value=2.5 Score=19.16 Aligned_cols=10 Identities=0% Similarity=-0.366 Sum_probs=7.6
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1klr_A 3 YQCQYCEFRS 12 (30)
T ss_dssp CCCSSSSCCC
T ss_pred ccCCCCCCcc
Confidence 6788888764
No 55
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=62.39 E-value=3 Score=19.04 Aligned_cols=9 Identities=11% Similarity=-0.562 Sum_probs=6.9
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.||+.
T Consensus 3 ~~C~~C~k~ 11 (29)
T 1rik_A 3 FACPECPKR 11 (29)
T ss_dssp EECSSSSCE
T ss_pred ccCCCCCch
Confidence 678888875
No 56
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=61.93 E-value=2.9 Score=18.91 Aligned_cols=9 Identities=0% Similarity=-0.267 Sum_probs=6.9
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.||+.
T Consensus 4 ~~C~~C~~~ 12 (30)
T 2m0d_A 4 YQCDYCGRS 12 (30)
T ss_dssp EECTTTCCE
T ss_pred ccCCCCCcc
Confidence 678888875
No 57
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=61.21 E-value=3.8 Score=18.72 Aligned_cols=8 Identities=13% Similarity=-0.392 Sum_probs=4.1
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 4 ~~C~~C~k 11 (27)
T 2kvh_A 4 FSCSLCPQ 11 (27)
T ss_dssp EECSSSSC
T ss_pred ccCCCcCh
Confidence 44555554
No 58
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=61.21 E-value=2.9 Score=19.00 Aligned_cols=10 Identities=0% Similarity=-0.489 Sum_probs=7.4
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 6788888753
No 59
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_T 3u5g_V
Probab=59.96 E-value=4.7 Score=28.09 Aligned_cols=35 Identities=37% Similarity=0.517 Sum_probs=29.7
Q ss_pred CCCCcccccccccCccccccceeeccccccccccccc
Q 037395 34 SRVPSICSCANRITPHAFDHGFILSGFAEKDDQEGMN 70 (121)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 70 (121)
.-+|--||=.|||. +|-||+-|---+++-|.. |.-
T Consensus 11 LYiPRKCSaTNriI-~AKDHaSVQIni~~vd~~-G~~ 45 (87)
T 3u5c_V 11 LYVPRKCSATNRII-KADDHASVQINVAKVDEE-GRA 45 (87)
T ss_dssp SCCCCCCTTTCCCC-CTTCTTCEEEEEECCCSS-SCC
T ss_pred EEccccccccCCce-ecCCcceEEEeeeeECCc-ccE
Confidence 46899999999997 589999999999998865 654
No 60
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=59.28 E-value=7.5 Score=28.22 Aligned_cols=20 Identities=35% Similarity=0.893 Sum_probs=12.7
Q ss_pred eEEeEEEEeeeCCCCceEec
Q 037395 100 IKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 100 VKR~AVGIWkCkkCgktfAG 119 (121)
++|...-+|.|.-||+++-|
T Consensus 148 ~~~~~~~~~~C~~CG~~~~g 167 (191)
T 1lko_A 148 FLREQATKWRCRNCGYVHEG 167 (191)
T ss_dssp SEEEEEEEEEETTTCCEEEE
T ss_pred cccCCCceEEECCCCCEeeC
Confidence 34555557777777777654
No 61
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=59.28 E-value=1.9 Score=24.81 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=5.7
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 47 ~~C~~C~~~f 56 (77)
T 2cot_A 47 YKCDECGKAF 56 (77)
T ss_dssp EECSSSCCEE
T ss_pred eeCCCCCCcc
Confidence 5555555555
No 62
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=58.85 E-value=9.4 Score=25.65 Aligned_cols=22 Identities=18% Similarity=0.049 Sum_probs=13.9
Q ss_pred cceEEeEEEEeeeCCCCceEec
Q 037395 98 YAIKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 98 ~kVKR~AVGIWkCkkCgktfAG 119 (121)
...-+..-+.|+|..||+.+..
T Consensus 64 ~L~i~~~p~~~~C~~CG~~~e~ 85 (119)
T 2kdx_A 64 ILDIVDEKVELECKDCSHVFKP 85 (119)
T ss_dssp CEEEEEECCEEECSSSSCEECS
T ss_pred EEEEEeccceEEcCCCCCEEeC
Confidence 3333455567888888877653
No 63
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=58.83 E-value=3.2 Score=19.06 Aligned_cols=10 Identities=0% Similarity=-0.432 Sum_probs=7.5
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 3 ~~C~~C~k~f 12 (30)
T 1paa_A 3 YACGLCNRAF 12 (30)
T ss_dssp SBCTTTCCBC
T ss_pred cCCcccCccc
Confidence 6788888763
No 64
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=58.46 E-value=3.9 Score=19.55 Aligned_cols=10 Identities=10% Similarity=-0.310 Sum_probs=7.8
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 8 ~~C~~C~k~f 17 (35)
T 2elx_A 8 YVCALCLKKF 17 (35)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCcchh
Confidence 7889998763
No 65
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=62.45 E-value=2.1 Score=19.46 Aligned_cols=11 Identities=9% Similarity=-0.354 Sum_probs=8.0
Q ss_pred eecccCCCcce
Q 037395 90 AWGSWNYKYAI 100 (121)
Q Consensus 90 htCPFCGK~kV 100 (121)
|.|+.||+.-.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 67888887643
No 66
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=57.55 E-value=2 Score=26.03 Aligned_cols=48 Identities=17% Similarity=0.056 Sum_probs=26.3
Q ss_pred ccccccch-hhhhhhhh------cceeecccCCCcceEE--------e--EEEEeeeCCCCceEe
Q 037395 71 CWKPFVNP-ALMFYFVF------ACVAWGSWNYKYAIKR--------K--VVGIWSCKYCGKVKA 118 (121)
Q Consensus 71 ~~k~~~~~-~lm~~~~~------~~~htCPFCGK~kVKR--------~--AVGIWkCkkCgktfA 118 (121)
|-+.|... .|..|... .-.|.|+.|++.-..+ . ....+.|..|++.|.
T Consensus 41 C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 41 CGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp TCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEES
T ss_pred CCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhC
Confidence 45555443 35555442 2347788888763211 1 223478888888774
No 67
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=56.86 E-value=3.6 Score=20.09 Aligned_cols=10 Identities=0% Similarity=-0.592 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 12 ~~C~~C~k~f 21 (37)
T 1p7a_A 12 FQCPDCDRSF 21 (37)
T ss_dssp BCCTTTCCCB
T ss_pred ccCCCCCccc
Confidence 7899999864
No 68
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.62 E-value=4.1 Score=19.85 Aligned_cols=10 Identities=10% Similarity=-0.047 Sum_probs=7.9
Q ss_pred eeecccCCCc
Q 037395 89 VAWGSWNYKY 98 (121)
Q Consensus 89 ~htCPFCGK~ 98 (121)
.|.|+.||+.
T Consensus 9 ~~~C~~C~k~ 18 (36)
T 2els_A 9 IFTCEYCNKV 18 (36)
T ss_dssp CEECTTTCCE
T ss_pred CEECCCCCce
Confidence 3789999885
No 69
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.39 E-value=2.7 Score=25.38 Aligned_cols=30 Identities=13% Similarity=-0.007 Sum_probs=19.1
Q ss_pred eeecccCCCcceE--------Ee--EEEEeeeCCCCceEe
Q 037395 89 VAWGSWNYKYAIK--------RK--VVGIWSCKYCGKVKA 118 (121)
Q Consensus 89 ~htCPFCGK~kVK--------R~--AVGIWkCkkCgktfA 118 (121)
.|.|+.|++.-.. |. ....+.|..|++.|.
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 76 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFM 76 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEES
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhc
Confidence 3788888875211 11 223588999998875
No 70
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=56.21 E-value=2.6 Score=24.69 Aligned_cols=29 Identities=10% Similarity=-0.032 Sum_probs=16.9
Q ss_pred eecccCCCcceEE----------eEEEEeeeCCCCceEe
Q 037395 90 AWGSWNYKYAIKR----------KVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~kVKR----------~AVGIWkCkkCgktfA 118 (121)
|.|+.|++.-..+ .....+.|..|++.|.
T Consensus 37 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 75 (96)
T 2dmd_A 37 YKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASR 75 (96)
T ss_dssp EECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEES
T ss_pred EeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 6777777643110 1223477888887774
No 71
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.08 E-value=4.3 Score=19.59 Aligned_cols=11 Identities=0% Similarity=-0.562 Sum_probs=8.3
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||+.-
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elt_A 9 PYKCPQCSYAS 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CCCCCCCCccc
Confidence 37899998753
No 72
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=55.97 E-value=2.4 Score=24.74 Aligned_cols=49 Identities=18% Similarity=0.009 Sum_probs=30.8
Q ss_pred cccccccch-hhhhhhhhc---ceeecccCCCcceE--------EeEE----EEeeeCCCCceEe
Q 037395 70 NCWKPFVNP-ALMFYFVFA---CVAWGSWNYKYAIK--------RKVV----GIWSCKYCGKVKA 118 (121)
Q Consensus 70 ~~~k~~~~~-~lm~~~~~~---~~htCPFCGK~kVK--------R~AV----GIWkCkkCgktfA 118 (121)
.|-+.|.+. .|..|...- -.|.|+.|++.-.. |.-. ..+.|..|++.|.
T Consensus 12 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~ 76 (95)
T 2yt9_A 12 ICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76 (95)
T ss_dssp SSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred CCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence 356666544 566666532 24889999986422 1222 4589999998875
No 73
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.60 E-value=0.41 Score=26.64 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=13.0
Q ss_pred eecccCCCcceEEeE---EEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKV---VGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~A---VGIWkCkkCgktf 117 (121)
|.|+.||+.-..+.. ...+.|..|++.|
T Consensus 19 ~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f 49 (73)
T 2ctu_A 19 QKCSKCGIIFIRRSTLSRRKTPMCEKCRKDS 49 (73)
T ss_dssp EECSSSCCEEECCCCCCCSSSCCCHHHHHTC
T ss_pred eeCCcccchhCCHHHhCcCCCCCCCCCChhh
Confidence 566666654321111 2335555555544
No 74
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.54 E-value=4 Score=19.71 Aligned_cols=10 Identities=10% Similarity=-0.363 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elr_A 10 HLCDMCGKKF 19 (36)
T ss_dssp CBCTTTCCBC
T ss_pred eecCcCCCCc
Confidence 7899998863
No 75
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.27 E-value=1.3 Score=27.84 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=4.6
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
..|..|++.|
T Consensus 63 ~~C~~Cgk~F 72 (96)
T 2ctd_A 63 FTCHHCGKQL 72 (96)
T ss_dssp CCCSSSCCCC
T ss_pred eECCCCCCee
Confidence 3444444443
No 76
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=55.19 E-value=4.7 Score=19.41 Aligned_cols=10 Identities=0% Similarity=-0.499 Sum_probs=7.8
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 8 ~~C~~C~k~f 17 (35)
T 1srk_A 8 FVCRICLSAF 17 (35)
T ss_dssp EECSSSCCEE
T ss_pred eeCCCCCccc
Confidence 7888898753
No 77
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=59.85 E-value=2.6 Score=19.47 Aligned_cols=10 Identities=10% Similarity=-0.439 Sum_probs=7.9
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2lvt_A 3 CQCVMCGKAF 12 (29)
Confidence 6789998864
No 78
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=54.62 E-value=3.8 Score=19.94 Aligned_cols=9 Identities=11% Similarity=-0.536 Sum_probs=7.4
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.|||.
T Consensus 3 ~~C~~C~k~ 11 (32)
T 2kfq_A 3 FACPACPKR 11 (32)
T ss_dssp SSSSSSCTT
T ss_pred CCCCCCCcc
Confidence 678999886
No 79
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.98 E-value=4.9 Score=19.70 Aligned_cols=10 Identities=10% Similarity=-0.133 Sum_probs=7.9
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 10 ~~C~~C~k~f 19 (37)
T 2elp_A 10 MKCPYCDFYF 19 (37)
T ss_dssp EECSSSSCEE
T ss_pred eECCCCChhh
Confidence 7899998763
No 80
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.16 E-value=5.3 Score=19.44 Aligned_cols=10 Identities=0% Similarity=-0.582 Sum_probs=7.9
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 10 ~~C~~C~k~f 19 (36)
T 2elv_A 10 YDCHICERKF 19 (36)
T ss_dssp EECSSSCCEE
T ss_pred eECCCCCCcc
Confidence 7899998753
No 81
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=51.90 E-value=5.5 Score=19.36 Aligned_cols=11 Identities=9% Similarity=-0.489 Sum_probs=8.3
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||+.-
T Consensus 9 ~~~C~~C~k~f 19 (36)
T 2elq_A 9 PFKCSLCEYAT 19 (36)
T ss_dssp SEECSSSSCEE
T ss_pred CccCCCCCchh
Confidence 37899998763
No 82
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=51.77 E-value=7.6 Score=17.86 Aligned_cols=8 Identities=0% Similarity=-0.416 Sum_probs=4.1
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 4 ~~C~~C~k 11 (27)
T 2kvg_A 4 YRCPLCRA 11 (27)
T ss_dssp EEETTTTE
T ss_pred cCCCCCCc
Confidence 45555554
No 83
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=51.71 E-value=3.6 Score=27.26 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=5.5
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|+++|
T Consensus 134 ~~C~~C~~~f 143 (190)
T 2i13_A 134 YKCPECGKSF 143 (190)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 5555555554
No 84
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=57.03 E-value=3.1 Score=19.03 Aligned_cols=11 Identities=0% Similarity=-0.450 Sum_probs=8.3
Q ss_pred eecccCCCcce
Q 037395 90 AWGSWNYKYAI 100 (121)
Q Consensus 90 htCPFCGK~kV 100 (121)
|.|+.||+.-.
T Consensus 4 ~~C~~C~k~f~ 14 (30)
T 2lvr_A 4 YVCIHCQRQFA 14 (30)
Confidence 67889988643
No 85
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=51.15 E-value=5.1 Score=19.67 Aligned_cols=9 Identities=11% Similarity=-0.562 Sum_probs=7.1
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.|||.
T Consensus 3 ~~C~~C~k~ 11 (33)
T 1rim_A 3 FACPECPKR 11 (33)
T ss_dssp CCCSSSCCC
T ss_pred ccCCCCCch
Confidence 678888875
No 86
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=50.92 E-value=13 Score=26.08 Aligned_cols=42 Identities=7% Similarity=-0.053 Sum_probs=23.2
Q ss_pred chh-hhhhhhhcceeecccCCCcceEEeEEEEeeeCCCCceEec
Q 037395 77 NPA-LMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 77 ~~~-lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkkCgktfAG 119 (121)
.|+ |-|.|....+-| .+=|....-...-+.|.|..||+++.+
T Consensus 40 ~~e~l~faf~~~~~gt-~~e~A~L~i~~~p~~~~C~~CG~~~~~ 82 (139)
T 3a43_A 40 AEDIVKFAMEQLFAGT-IAEGAEIEFVEEEAVFKCRNCNYEWKL 82 (139)
T ss_dssp CHHHHHHHHHHHHTTS-TTTTCEEEEEEECCEEEETTTCCEEEG
T ss_pred hHHHHHHHHHHHHcCC-cccCCEEEEEecCCcEECCCCCCEEec
Confidence 444 344454444444 222333333345578999999998865
No 87
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=49.34 E-value=3.5 Score=24.21 Aligned_cols=11 Identities=36% Similarity=1.035 Sum_probs=6.0
Q ss_pred eeeCCCCceEe
Q 037395 108 WSCKYCGKVKA 118 (121)
Q Consensus 108 WkCkkCgktfA 118 (121)
+.|..|++.|.
T Consensus 32 ~~C~~C~k~f~ 42 (88)
T 1llm_C 32 FACDICGRKFA 42 (88)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCCccC
Confidence 55555555553
No 88
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=48.43 E-value=6.6 Score=19.58 Aligned_cols=10 Identities=10% Similarity=-0.266 Sum_probs=7.9
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 7 ~~C~~C~k~f 16 (39)
T 1njq_A 7 YTCSFCKREF 16 (39)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 7889998763
No 89
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=47.60 E-value=8.5 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.046 Sum_probs=21.0
Q ss_pred eecccCCCcceEE----------eEEEEeeeCCCCceEe
Q 037395 90 AWGSWNYKYAIKR----------KVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPFCGK~kVKR----------~AVGIWkCkkCgktfA 118 (121)
.+||.||.....= ..+-...|.+||++|.
T Consensus 73 ~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 73 KECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp SCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCCCC
T ss_pred cCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCEEe
Confidence 7899999875321 1344689999999874
No 90
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=46.02 E-value=7.2 Score=25.24 Aligned_cols=27 Identities=7% Similarity=-0.363 Sum_probs=18.3
Q ss_pred ecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
.||.|+....--...|-=.|+.|+..+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 10 ACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp CCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred eCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 499998764332334556799998765
No 91
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=45.83 E-value=13 Score=22.56 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=20.4
Q ss_pred eecccCCCcceE------E----eEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIK------R----KVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVK------R----~AVGIWkCkkCgktf 117 (121)
..||.||....- | ..+=...|.+||+.|
T Consensus 10 ~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 10 FTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp SCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred cCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 579999987542 2 135578999999876
No 92
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=45.41 E-value=8 Score=19.85 Aligned_cols=11 Identities=9% Similarity=-0.625 Sum_probs=8.4
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||+.-
T Consensus 12 ~~~C~~C~k~F 22 (44)
T 2epv_A 12 PYECNECGKAF 22 (44)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCCccc
Confidence 37899998863
No 93
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.75 E-value=8.3 Score=19.79 Aligned_cols=10 Identities=20% Similarity=-0.575 Sum_probs=8.2
Q ss_pred eeecccCCCc
Q 037395 89 VAWGSWNYKY 98 (121)
Q Consensus 89 ~htCPFCGK~ 98 (121)
.|.|+.|||.
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2emi_A 12 HYECSECGKA 21 (46)
T ss_dssp CEECSSSCCE
T ss_pred CCCCCCCCcc
Confidence 3889999986
No 94
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=44.33 E-value=7.4 Score=19.43 Aligned_cols=10 Identities=10% Similarity=-0.499 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 12 ~~C~~C~k~f 21 (42)
T 2ytb_A 12 YRCDQCGKAF 21 (42)
T ss_dssp BCCTTTTCCB
T ss_pred eeCCCccchh
Confidence 7899999863
No 95
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.13 E-value=11 Score=18.66 Aligned_cols=8 Identities=13% Similarity=-0.276 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 10 ~~C~~C~k 17 (37)
T 2elm_A 10 YYCSQCHY 17 (37)
T ss_dssp EECSSSSC
T ss_pred eECCCCCc
Confidence 55555554
No 96
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=43.88 E-value=16 Score=22.03 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=17.2
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
-+|..|++... .| .+|+.|+++.
T Consensus 15 t~C~~C~k~i~----~G-~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSMI----FG-VKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSSC----CE-EEETTTTEEE
T ss_pred cCccccCceeE----Cc-CCCCCCCCcc
Confidence 35889988875 35 6899998764
No 97
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.28 E-value=7.3 Score=20.49 Aligned_cols=9 Identities=0% Similarity=-0.500 Sum_probs=7.5
Q ss_pred eeecccCCC
Q 037395 89 VAWGSWNYK 97 (121)
Q Consensus 89 ~htCPFCGK 97 (121)
.|.|+.|||
T Consensus 40 ~~~C~~C~k 48 (48)
T 2epr_A 40 PYSSGPSSG 48 (48)
T ss_dssp CCCSCCCCC
T ss_pred CccCCCCCC
Confidence 478999987
No 98
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=43.16 E-value=8.3 Score=19.80 Aligned_cols=10 Identities=10% Similarity=-0.565 Sum_probs=8.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2enf_A 13 YKCNECGKVF 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCccc
Confidence 7899999863
No 99
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.84 E-value=9.1 Score=19.46 Aligned_cols=10 Identities=10% Similarity=-0.475 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (44)
T 2yu5_A 13 FKCSKCDRVF 22 (44)
T ss_dssp EECSSSSCEE
T ss_pred eECCCCCchh
Confidence 7899998863
No 100
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=42.81 E-value=25 Score=26.42 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=11.6
Q ss_pred EEEEeeeCCCCceEe
Q 037395 104 VVGIWSCKYCGKVKA 118 (121)
Q Consensus 104 AVGIWkCkkCgktfA 118 (121)
..-++.|..|+..+.
T Consensus 50 ~l~~~~C~~Cg~v~~ 64 (416)
T 4e2x_A 50 RLAVGRCDSCEMVQL 64 (416)
T ss_dssp EEEEEEETTTCCEEE
T ss_pred cceEEECCCCCceee
Confidence 456789999997764
No 101
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.78 E-value=8.4 Score=19.38 Aligned_cols=11 Identities=0% Similarity=-0.674 Sum_probs=8.4
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||+.-
T Consensus 11 ~~~C~~C~k~f 21 (42)
T 2eos_A 11 PYPCEICGTRF 21 (42)
T ss_dssp CBCCSSSCCCB
T ss_pred CEECCCCCCcc
Confidence 37899999863
No 102
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.47 E-value=8.4 Score=19.21 Aligned_cols=10 Identities=0% Similarity=-0.582 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 11 ~~C~~C~k~f 20 (42)
T 2yte_A 11 YSCAECKETF 20 (42)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCCcc
Confidence 7899999863
No 103
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.42 E-value=11 Score=18.76 Aligned_cols=8 Identities=0% Similarity=-0.711 Sum_probs=4.1
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 12 ~~C~~C~k 19 (42)
T 2en2_A 12 YKCETCGA 19 (42)
T ss_dssp EECTTTCC
T ss_pred EeCCCcCh
Confidence 44555554
No 104
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=42.16 E-value=9.4 Score=19.67 Aligned_cols=11 Identities=9% Similarity=-0.613 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~F 22 (46)
T 2emj_A 12 PFECAECGKSF 22 (46)
T ss_dssp SEECSSSSCEE
T ss_pred CEECCCCCccc
Confidence 37899998863
No 105
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=42.10 E-value=9.4 Score=19.58 Aligned_cols=10 Identities=0% Similarity=-0.731 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2en3_A 13 FQCKECGMNF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred eeCcccChhh
Confidence 7899998863
No 106
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=41.87 E-value=8 Score=29.35 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=21.5
Q ss_pred eeecccCCCcceEEeEEEEeeeCCCCce
Q 037395 89 VAWGSWNYKYAIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 89 ~htCPFCGK~kVKR~AVGIWkCkkCgkt 116 (121)
-..||.||.......+--...|..|+..
T Consensus 107 ~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 107 HKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp TSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CCccccCCCcCccCCCceeeeCCCCCCE
Confidence 3579999998866655556789999875
No 107
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=41.66 E-value=8.2 Score=19.83 Aligned_cols=11 Identities=9% Similarity=-0.601 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2eq1_A 12 PYKCNECGKAF 22 (46)
T ss_dssp CCCCTTTTCCC
T ss_pred CeECCcCChhh
Confidence 37899999863
No 108
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.64 E-value=9.9 Score=19.57 Aligned_cols=11 Identities=9% Similarity=-0.707 Sum_probs=8.4
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2em4_A 12 PYECIECGKAF 22 (46)
T ss_dssp SEECSSSCCEE
T ss_pred CcCCCCCCCcc
Confidence 37899998863
No 109
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.35 E-value=9.8 Score=19.59 Aligned_cols=10 Identities=10% Similarity=-0.525 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eoy_A 13 FKCNKCEKTF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred EECcCCCCcC
Confidence 7899999863
No 110
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.33 E-value=4.4 Score=24.63 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=25.5
Q ss_pred ccccccch-hhhhhhhh----cce--eecccCCCcc--e-----EE---eE--EEEeeeCCCCceEe
Q 037395 71 CWKPFVNP-ALMFYFVF----ACV--AWGSWNYKYA--I-----KR---KV--VGIWSCKYCGKVKA 118 (121)
Q Consensus 71 ~~k~~~~~-~lm~~~~~----~~~--htCPFCGK~k--V-----KR---~A--VGIWkCkkCgktfA 118 (121)
|-|.|... .|..|... .++ +.|+.|++.- . ++ .- .-.+.|..|++.|+
T Consensus 25 C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~ 91 (115)
T 2dmi_A 25 CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFE 91 (115)
T ss_dssp SSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSCBCSSSCCBCS
T ss_pred cCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcceECCCCCCccC
Confidence 55555543 34445442 121 2488888653 1 11 11 23478888888775
No 111
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.91 E-value=10 Score=19.27 Aligned_cols=10 Identities=10% Similarity=-0.592 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (44)
T 2emb_A 13 YECSKCQATF 22 (44)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCCcc
Confidence 7899998863
No 112
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.71 E-value=9.5 Score=18.46 Aligned_cols=8 Identities=13% Similarity=-0.454 Sum_probs=4.2
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 10 ~~C~~C~k 17 (37)
T 2elo_A 10 YSCPVCEK 17 (37)
T ss_dssp CEETTTTE
T ss_pred cCCCCCCC
Confidence 45555554
No 113
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=40.63 E-value=8.6 Score=19.37 Aligned_cols=10 Identities=10% Similarity=-0.572 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (44)
T 2en7_A 13 YVCNECGKAF 22 (44)
T ss_dssp SCCTTTCCCC
T ss_pred eECCCCCCcc
Confidence 7899999863
No 114
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=40.39 E-value=20 Score=20.43 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=18.7
Q ss_pred ecccCCCcc---eEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKYA---IKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~k---VKR~AVGIWkCkkCgktf 117 (121)
.|+.|+.+. ++....=+=+|+.||...
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 589999873 333344556799999864
No 115
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=40.00 E-value=12 Score=27.14 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=15.3
Q ss_pred eecccCCCc--ceEEeEEEEeeeCCCCceEec
Q 037395 90 AWGSWNYKY--AIKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 90 htCPFCGK~--kVKR~AVGIWkCkkCgktfAG 119 (121)
..|+.|++. ..+|. -+|+.||..|-+
T Consensus 162 ~~C~~C~~~F~~~~rr----hhCr~CG~v~C~ 189 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRK----HHCRNCGQVFCG 189 (220)
T ss_dssp SBCTTTCCBCCSSSCC----EECTTTCCEECS
T ss_pred CccCCCCCccCCcccc----cccCCcCCEECh
Confidence 357777665 23333 477777776644
No 116
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=39.94 E-value=10 Score=20.28 Aligned_cols=10 Identities=10% Similarity=-0.506 Sum_probs=7.8
Q ss_pred eeecccCCCc
Q 037395 89 VAWGSWNYKY 98 (121)
Q Consensus 89 ~htCPFCGK~ 98 (121)
.|.|+.|||.
T Consensus 7 p~~C~~C~k~ 16 (48)
T 3iuf_A 7 PYACDICGKR 16 (48)
T ss_dssp CEECTTTCCE
T ss_pred CEECCCcCcc
Confidence 3788899875
No 117
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=39.74 E-value=16 Score=23.92 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=25.0
Q ss_pred cccccccccchhhhhhhhhcceeecccCCCcceE-EeEEEEeeeCCCCc
Q 037395 68 GMNCWKPFVNPALMFYFVFACVAWGSWNYKYAIK-RKVVGIWSCKYCGK 115 (121)
Q Consensus 68 g~~~~k~~~~~~lm~~~~~~~~htCPFCGK~kVK-R~AVGIWkCkkCgk 115 (121)
|+++-.-....+.+.|.. +.|..|++.-+. +. |+|..|--
T Consensus 4 ~~~~~~~~~~~~~~~H~~----~~Cd~C~~~pI~G~R----ykC~~C~d 44 (82)
T 2fc7_A 4 GSSGQQMQAESGFVQHVG----FKCDNCGIEPIQGVR----WHCQDCPP 44 (82)
T ss_dssp CCCCSSSCSSTTSCEESS----CCCSSSCCSSEESCE----EEESSSCS
T ss_pred ccchhhhhccccCCeeCc----CCCCCCCCCcceece----EECCcCCC
Confidence 444444444556666766 678889875432 22 99999853
No 118
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.48 E-value=9.4 Score=19.48 Aligned_cols=10 Identities=20% Similarity=-0.605 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ep1_A 13 YECSDCGKSF 22 (46)
T ss_dssp SCCSSSCCCC
T ss_pred cCCCCCCchh
Confidence 7899999863
No 119
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.42 E-value=10 Score=19.61 Aligned_cols=11 Identities=9% Similarity=-0.571 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2eon_A 12 PYKCQVCGKAF 22 (46)
T ss_dssp SCBCSSSCCBC
T ss_pred ccCCCCCCccc
Confidence 37899999863
No 120
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.41 E-value=9.9 Score=19.48 Aligned_cols=10 Identities=20% Similarity=-0.469 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2emg_A 13 FICSECGKVF 22 (46)
T ss_dssp CBCTTTCCBC
T ss_pred EECCccCccc
Confidence 7899999863
No 121
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.32 E-value=9.8 Score=19.60 Aligned_cols=11 Identities=9% Similarity=-0.574 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||+.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2eoh_A 12 PYECKECRKTF 22 (46)
T ss_dssp SCCCSSSCCCC
T ss_pred CcCCCCcCchh
Confidence 37899999863
No 122
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.27 E-value=11 Score=19.24 Aligned_cols=11 Identities=9% Similarity=-0.544 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||+.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2ytj_A 12 PYICAECGKAF 22 (46)
T ss_dssp SEECSSSCCEE
T ss_pred CeECCCCChhh
Confidence 38899999863
No 123
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.02 E-value=9 Score=19.65 Aligned_cols=10 Identities=10% Similarity=-0.565 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2yti_A 13 YKCNECGKVF 22 (46)
T ss_dssp TCCSSSCCCC
T ss_pred eECCCCCccc
Confidence 7899999863
No 124
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.97 E-value=11 Score=19.35 Aligned_cols=10 Identities=10% Similarity=-0.592 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2eoo_A 13 YGCNECGKNF 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred EEccccCccc
Confidence 7899999863
No 125
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=38.85 E-value=11 Score=20.32 Aligned_cols=10 Identities=20% Similarity=-0.057 Sum_probs=8.4
Q ss_pred eeecccCCCc
Q 037395 89 VAWGSWNYKY 98 (121)
Q Consensus 89 ~htCPFCGK~ 98 (121)
.|.|+.||+.
T Consensus 24 ~~~C~~C~k~ 33 (54)
T 1yui_A 24 PATCPICYAV 33 (54)
T ss_dssp CEECTTTCCE
T ss_pred CccCCCCCcc
Confidence 4889999986
No 126
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=38.85 E-value=13 Score=27.33 Aligned_cols=30 Identities=13% Similarity=0.168 Sum_probs=21.9
Q ss_pred eeecccCCCcceE------E----eEEEEeeeCCCCceEe
Q 037395 89 VAWGSWNYKYAIK------R----KVVGIWSCKYCGKVKA 118 (121)
Q Consensus 89 ~htCPFCGK~kVK------R----~AVGIWkCkkCgktfA 118 (121)
..+||.||..... | ..+-...|..||+.|-
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 3589999987532 2 2466889999999873
No 127
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=38.82 E-value=3 Score=24.96 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=31.5
Q ss_pred cccccccch-hhhhhhhhc---ceeecccCCCcceE--------Ee--EEEEeeeCCCCceEe
Q 037395 70 NCWKPFVNP-ALMFYFVFA---CVAWGSWNYKYAIK--------RK--VVGIWSCKYCGKVKA 118 (121)
Q Consensus 70 ~~~k~~~~~-~lm~~~~~~---~~htCPFCGK~kVK--------R~--AVGIWkCkkCgktfA 118 (121)
.|-+.|.+. .|..|...- =.|.|+.|++.-.. |. ....+.|..|++.|.
T Consensus 22 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 84 (106)
T 2ee8_A 22 FCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84 (106)
T ss_dssp SSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred CCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence 477788765 455665432 24899999986422 12 233588999998874
No 128
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=38.79 E-value=11 Score=19.20 Aligned_cols=10 Identities=20% Similarity=-0.453 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2el4_A 13 YGCSQCAKTF 22 (46)
T ss_dssp EECSSSSCEE
T ss_pred eECCCCCchh
Confidence 7899999863
No 129
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=38.70 E-value=14 Score=18.33 Aligned_cols=8 Identities=13% Similarity=-0.404 Sum_probs=4.4
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 12 ~~C~~C~k 19 (42)
T 2epc_A 12 YLCGQCGK 19 (42)
T ss_dssp EECSSSCC
T ss_pred eECCCCCc
Confidence 45555554
No 130
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.63 E-value=15 Score=18.84 Aligned_cols=8 Identities=13% Similarity=-0.488 Sum_probs=3.9
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2eoz_A 13 YSCNVCGK 20 (46)
T ss_dssp EEETTTTE
T ss_pred eECcccCh
Confidence 44555544
No 131
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.58 E-value=10 Score=19.52 Aligned_cols=11 Identities=9% Similarity=-0.658 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|++.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2emz_A 12 PFKCNECGKGF 22 (46)
T ss_dssp SCCCSSSCCCC
T ss_pred CeECCCCCccc
Confidence 37899999863
No 132
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.17 E-value=13 Score=22.54 Aligned_cols=28 Identities=11% Similarity=-0.234 Sum_probs=13.8
Q ss_pred cccccc--chhhhhhhhh----cceeecccCCCc
Q 037395 71 CWKPFV--NPALMFYFVF----ACVAWGSWNYKY 98 (121)
Q Consensus 71 ~~k~~~--~~~lm~~~~~----~~~htCPFCGK~ 98 (121)
|-|.|. +..|..|... .-.|.|+.|||.
T Consensus 30 C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~ 63 (98)
T 2gqj_A 30 CNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQ 63 (98)
T ss_dssp TCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCC
T ss_pred CCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCc
Confidence 555554 2344444332 223667777664
No 133
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.13 E-value=11 Score=19.20 Aligned_cols=10 Identities=20% Similarity=-0.578 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eov_A 13 YKCSDCGKSF 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred ccCCccChhh
Confidence 7899999863
No 134
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=38.12 E-value=6.7 Score=26.09 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=24.5
Q ss_pred ccccccch-hhhhhhhh---cceeecccCCCcceE--------Ee--EEEEeeeCCCCceEe
Q 037395 71 CWKPFVNP-ALMFYFVF---ACVAWGSWNYKYAIK--------RK--VVGIWSCKYCGKVKA 118 (121)
Q Consensus 71 ~~k~~~~~-~lm~~~~~---~~~htCPFCGK~kVK--------R~--AVGIWkCkkCgktfA 118 (121)
|-|.|... .|..|... .-.|.|+.||+.-.. |. +.--+.|..|+++|+
T Consensus 28 C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 89 (133)
T 2lt7_A 28 CKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFI 89 (133)
T ss_dssp TCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEES
T ss_pred CCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcC
Confidence 45555443 34444331 124677777765221 11 122477777777764
No 135
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=38.04 E-value=9.7 Score=19.52 Aligned_cols=10 Identities=10% Similarity=-0.575 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eq2_A 13 YQCNECGKAF 22 (46)
T ss_dssp SSCCSSCCCC
T ss_pred eECCCCCccc
Confidence 7899999863
No 136
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.77 E-value=11 Score=19.36 Aligned_cols=10 Identities=10% Similarity=-0.589 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2yth_A 13 FQCEECGKRF 22 (46)
T ss_dssp BCCSSSCCCB
T ss_pred CCCCCCCccc
Confidence 7899999863
No 137
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.69 E-value=11 Score=19.34 Aligned_cols=10 Identities=10% Similarity=-0.575 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2em6_A 13 YKCDVCGKEF 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCccc
Confidence 7899999863
No 138
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.43 E-value=11 Score=19.37 Aligned_cols=10 Identities=10% Similarity=-0.512 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2enh_A 13 YECDVCRKAF 22 (46)
T ss_dssp CBCTTTCCBC
T ss_pred cCCCCcCchh
Confidence 7899999863
No 139
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=37.38 E-value=16 Score=22.74 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=5.4
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
-+|+.||+.|
T Consensus 28 HHCR~CG~v~ 37 (73)
T 1vfy_A 28 HHCRSCGGVF 37 (73)
T ss_dssp EECTTTCCEE
T ss_pred ccCCCCCEEE
Confidence 3555555554
No 140
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.30 E-value=11 Score=19.48 Aligned_cols=11 Identities=18% Similarity=-0.314 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|+|.-
T Consensus 12 ~~~C~~C~k~F 22 (46)
T 2eom_A 12 GHRCSDCGKFF 22 (46)
T ss_dssp SCCCSSSCCCC
T ss_pred CcCCCCCCCee
Confidence 37899999863
No 141
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.30 E-value=11 Score=19.17 Aligned_cols=10 Identities=10% Similarity=-0.608 Sum_probs=8.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eop_A 13 HECRECGKSF 22 (46)
T ss_dssp CBCTTTCCBC
T ss_pred eeCCCCCchh
Confidence 7899999863
No 142
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.98 E-value=15 Score=18.83 Aligned_cols=8 Identities=25% Similarity=-0.545 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2ytp_A 13 YECSECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCcCCc
Confidence 55555554
No 143
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.89 E-value=15 Score=18.73 Aligned_cols=8 Identities=13% Similarity=-0.644 Sum_probs=4.2
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2emy_A 13 YECHECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred cCCCCCCc
Confidence 45555554
No 144
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=36.84 E-value=34 Score=28.55 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=21.0
Q ss_pred eeecccCCCcceEEeE-E----------EEeeeCCCCceE
Q 037395 89 VAWGSWNYKYAIKRKV-V----------GIWSCKYCGKVK 117 (121)
Q Consensus 89 ~htCPFCGK~kVKR~A-V----------GIWkCkkCgktf 117 (121)
.-.||.||+..+.|.- + =-+.|.+||++.
T Consensus 12 ~s~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn 51 (404)
T 2qkd_A 12 ESLCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNN 51 (404)
T ss_dssp EEECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEE
T ss_pred cccCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCch
Confidence 4579999987665542 3 338999999874
No 145
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.66 E-value=12 Score=19.20 Aligned_cols=10 Identities=10% Similarity=-0.565 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2ytn_A 13 YKCNECGKVF 22 (46)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCCee
Confidence 7899999863
No 146
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=36.40 E-value=34 Score=23.41 Aligned_cols=30 Identities=13% Similarity=0.101 Sum_probs=22.0
Q ss_pred eeecccCCCcceE------Ee----EEEEeeeCCCCceEe
Q 037395 89 VAWGSWNYKYAIK------RK----VVGIWSCKYCGKVKA 118 (121)
Q Consensus 89 ~htCPFCGK~kVK------R~----AVGIWkCkkCgktfA 118 (121)
...||.||...+- |. .+=.+.|.+||++|-
T Consensus 72 ~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~w~ 111 (122)
T 1twf_I 72 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFT 111 (122)
T ss_dssp CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEE
T ss_pred CCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCEec
Confidence 4789999987532 21 355789999999874
No 147
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=36.37 E-value=15 Score=23.70 Aligned_cols=27 Identities=0% Similarity=-0.380 Sum_probs=18.3
Q ss_pred ecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
.||.|+....--...|-=.|+.|+..+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 10 VCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp BCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 599997764333334666799998765
No 148
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.23 E-value=16 Score=18.57 Aligned_cols=8 Identities=13% Similarity=-0.495 Sum_probs=4.4
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2yts_A 13 YICNECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred EECCCCCh
Confidence 55555554
No 149
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.20 E-value=16 Score=18.56 Aligned_cols=8 Identities=13% Similarity=-0.507 Sum_probs=4.3
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2yrj_A 13 YRCGECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCC
Confidence 45555554
No 150
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.19 E-value=12 Score=19.24 Aligned_cols=11 Identities=9% Similarity=-0.429 Sum_probs=8.4
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~F 22 (46)
T 2en9_A 12 LFKCNECKKTF 22 (46)
T ss_dssp CCBCTTTCCBC
T ss_pred CEECCccCccc
Confidence 37899999863
No 151
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=36.19 E-value=14 Score=23.74 Aligned_cols=27 Identities=11% Similarity=-0.220 Sum_probs=18.3
Q ss_pred ecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
.||.|+....--...|-=.|+.|+..+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 10 VCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred ECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 599997764333334666799998765
No 152
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=36.16 E-value=12 Score=19.18 Aligned_cols=10 Identities=10% Similarity=-0.655 Sum_probs=8.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2emk_A 13 YECKECGKAF 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred eECCCCCchh
Confidence 7899999863
No 153
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.13 E-value=16 Score=18.24 Aligned_cols=8 Identities=13% Similarity=-0.503 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (44)
T 2eof_A 13 YECNECQK 20 (44)
T ss_dssp EECTTTCC
T ss_pred eECCCCCc
Confidence 55555554
No 154
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.13 E-value=16 Score=18.55 Aligned_cols=8 Identities=25% Similarity=-0.454 Sum_probs=4.4
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2ytf_A 13 FECSECQK 20 (46)
T ss_dssp EECSSSCC
T ss_pred cCCCCCCc
Confidence 55555554
No 155
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.01 E-value=23 Score=22.50 Aligned_cols=9 Identities=44% Similarity=0.999 Sum_probs=5.1
Q ss_pred eeCCCCceE
Q 037395 109 SCKYCGKVK 117 (121)
Q Consensus 109 kCkkCgktf 117 (121)
+|+.||+.|
T Consensus 32 HCR~CG~vf 40 (84)
T 1x4u_A 32 SCSNCGNSF 40 (84)
T ss_dssp ECSSSCCEE
T ss_pred hhcCCCcEE
Confidence 555555554
No 156
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.01 E-value=6.5 Score=25.55 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=19.1
Q ss_pred eeecccCCCcc-eEEeEEEEeeeCCCCceE
Q 037395 89 VAWGSWNYKYA-IKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 89 ~htCPFCGK~k-VKR~AVGIWkCkkCgktf 117 (121)
.|.|..||... ++. . .-=+|+.||..+
T Consensus 21 ~Y~C~~Cg~~~~l~~-~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 21 IYLCADCGARNTIQA-K-EVIRCRECGHRV 48 (63)
T ss_dssp CCBCSSSCCBCCCCS-S-SCCCCSSSCCCC
T ss_pred EEECCCCCCeeecCC-C-CceECCCCCcEE
Confidence 48899999885 553 2 335899998754
No 157
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.96 E-value=16 Score=18.14 Aligned_cols=8 Identities=13% Similarity=-0.628 Sum_probs=4.3
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 11 ~~C~~C~k 18 (41)
T 2ept_A 11 YECQECGK 18 (41)
T ss_dssp EECSSSCC
T ss_pred eECCCCCC
Confidence 45555554
No 158
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=35.85 E-value=16 Score=26.91 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=14.5
Q ss_pred eeecccCCCcceEEeEEEE--eeeCCCCc
Q 037395 89 VAWGSWNYKYAIKRKVVGI--WSCKYCGK 115 (121)
Q Consensus 89 ~htCPFCGK~kVKR~AVGI--WkCkkCgk 115 (121)
+|.|+.||-.-. |+ |.|.-|+.
T Consensus 171 ~~~C~~CG~i~~-----g~~p~~CP~C~~ 194 (202)
T 1yuz_A 171 FHLCPICGYIHK-----GEDFEKCPICFR 194 (202)
T ss_dssp EEECSSSCCEEE-----SSCCSBCTTTCC
T ss_pred EEEECCCCCEEc-----CcCCCCCCCCCC
Confidence 477777776532 47 77777764
No 159
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=35.83 E-value=16 Score=18.14 Aligned_cols=8 Identities=25% Similarity=-0.545 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 11 ~~C~~C~k 18 (42)
T 2el5_A 11 YECSECGK 18 (42)
T ss_dssp EECSSSCC
T ss_pred ccCCCcCh
Confidence 55666654
No 160
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.80 E-value=12 Score=19.11 Aligned_cols=10 Identities=10% Similarity=-0.492 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (44)
T 2eou_A 13 SECQECGKIF 22 (44)
T ss_dssp CCCTTTCCCC
T ss_pred eECCCCCccc
Confidence 7899999863
No 161
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.75 E-value=14 Score=18.87 Aligned_cols=10 Identities=10% Similarity=-0.502 Sum_probs=8.2
Q ss_pred eeecccCCCc
Q 037395 89 VAWGSWNYKY 98 (121)
Q Consensus 89 ~htCPFCGK~ 98 (121)
.|.|+.|||.
T Consensus 12 ~~~C~~C~k~ 21 (46)
T 2emp_A 12 PYMCNECGKA 21 (46)
T ss_dssp SEECSSSCCE
T ss_pred CeECCCCCch
Confidence 3789999986
No 162
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.70 E-value=14 Score=18.87 Aligned_cols=11 Identities=9% Similarity=-0.680 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2enc_A 12 PFKCEECGKGF 22 (46)
T ss_dssp SEECSSSCCEE
T ss_pred CcCCCCCCCcC
Confidence 37899999863
No 163
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.67 E-value=8.9 Score=25.03 Aligned_cols=11 Identities=18% Similarity=0.615 Sum_probs=6.2
Q ss_pred eeeCCCCceEe
Q 037395 108 WSCKYCGKVKA 118 (121)
Q Consensus 108 WkCkkCgktfA 118 (121)
..|..|++.|.
T Consensus 51 f~C~~Cgk~F~ 61 (102)
T 2ghf_A 51 YVCVECNFLTK 61 (102)
T ss_dssp EEETTTTEEES
T ss_pred cCCCCCCcccC
Confidence 55666665553
No 164
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.54 E-value=13 Score=18.95 Aligned_cols=10 Identities=10% Similarity=-0.718 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (47)
T 2epx_A 13 YECIECGKAF 22 (47)
T ss_dssp BCCSSSCCCB
T ss_pred EECCccCchh
Confidence 7899999863
No 165
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=35.40 E-value=18 Score=24.32 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=18.1
Q ss_pred eeccc--CCCcceEEeEEEEeeeCCCCceEe
Q 037395 90 AWGSW--NYKYAIKRKVVGIWSCKYCGKVKA 118 (121)
Q Consensus 90 htCPF--CGK~kVKR~AVGIWkCkkCgktfA 118 (121)
..|++ |.+..+ ++ ..|+.|+.+|-
T Consensus 26 ~~C~~~~Ck~~~~----l~-f~C~~C~~~FC 51 (86)
T 1wfe_A 26 YSCSFKGCTDVEL----VA-VICPYCEKNFC 51 (86)
T ss_dssp EECCSTTCCCEES----SC-EECTTTCCEEC
T ss_pred CCCCCcCCCCCCc----cc-eECCCCCcccc
Confidence 78999 987754 33 38999999874
No 166
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.38 E-value=12 Score=19.10 Aligned_cols=10 Identities=10% Similarity=-0.525 Sum_probs=8.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eoq_A 13 FKCDICGKSF 22 (46)
T ss_dssp CCCSSSCCCC
T ss_pred cCCCcCCchh
Confidence 7899999863
No 167
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.34 E-value=18 Score=18.41 Aligned_cols=8 Identities=13% Similarity=-0.433 Sum_probs=3.8
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (45)
T 2epu_A 13 FECTHCGK 20 (45)
T ss_dssp EEETTTTE
T ss_pred ccCCCCCC
Confidence 44555544
No 168
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.34 E-value=18 Score=18.22 Aligned_cols=10 Identities=40% Similarity=1.089 Sum_probs=4.8
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 13 ~~C~~C~k~F 22 (44)
T 2eox_A 13 YNCNECGKAF 22 (44)
T ss_dssp EEETTTTEEE
T ss_pred eECcccCccc
Confidence 4455555444
No 169
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=35.04 E-value=15 Score=23.75 Aligned_cols=27 Identities=4% Similarity=-0.259 Sum_probs=18.3
Q ss_pred ecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
.||.|+....--...|-=.|+.|+..+
T Consensus 10 ~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 10 VCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp BCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred ECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 599997764333334556799998765
No 170
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=35.01 E-value=20 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=18.1
Q ss_pred eecccCCCcce--EE---eEEEEee-------eCCCCceEecC
Q 037395 90 AWGSWNYKYAI--KR---KVVGIWS-------CKYCGKVKAGG 120 (121)
Q Consensus 90 htCPFCGK~kV--KR---~AVGIWk-------CkkCgktfAGG 120 (121)
..|+.|++... .+ ..-..|+ |..|++.+.|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~ 45 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQ 45 (65)
T ss_dssp EECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTS
T ss_pred CCCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCC
Confidence 46777777643 11 1223677 77777766543
No 171
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.90 E-value=15 Score=18.88 Aligned_cols=9 Identities=0% Similarity=-0.628 Sum_probs=7.7
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|.|+.||+.
T Consensus 13 ~~C~~C~k~ 21 (46)
T 2em5_A 13 HQCHECGRG 21 (46)
T ss_dssp EECSSSCCE
T ss_pred eECCcCCCc
Confidence 789999986
No 172
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=34.84 E-value=9.8 Score=20.93 Aligned_cols=9 Identities=0% Similarity=-0.828 Sum_probs=7.3
Q ss_pred eecccCCCc
Q 037395 90 AWGSWNYKY 98 (121)
Q Consensus 90 htCPFCGK~ 98 (121)
|+|+.|||.
T Consensus 9 ~~C~~CgK~ 17 (36)
T 1fv5_A 9 FMCLPCGIA 17 (36)
T ss_dssp CEETTTTEE
T ss_pred eECCCCCCc
Confidence 788888876
No 173
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.75 E-value=15 Score=18.86 Aligned_cols=10 Identities=10% Similarity=-0.721 Sum_probs=8.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2em8_A 13 YKCVECGKGY 22 (46)
T ss_dssp EECSSSCCEE
T ss_pred eECcccCchh
Confidence 7899999863
No 174
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.73 E-value=17 Score=18.50 Aligned_cols=8 Identities=13% Similarity=-0.478 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2ep3_A 13 YRCAECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCc
Confidence 55666655
No 175
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=34.65 E-value=19 Score=22.91 Aligned_cols=10 Identities=30% Similarity=1.052 Sum_probs=5.7
Q ss_pred eeCCCCceEe
Q 037395 109 SCKYCGKVKA 118 (121)
Q Consensus 109 kCkkCgktfA 118 (121)
+|+.||+.|-
T Consensus 37 HCR~CG~v~C 46 (82)
T 2yw8_A 37 HCRNCGHIFC 46 (82)
T ss_dssp ECTTTCCEEC
T ss_pred cCCCCCCEEC
Confidence 5666665553
No 176
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=34.61 E-value=13 Score=19.04 Aligned_cols=11 Identities=9% Similarity=-0.716 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2ely_A 12 PFKCVECGKGF 22 (46)
T ss_dssp SBCCSSSCCCB
T ss_pred CcccCccCccc
Confidence 37899999863
No 177
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=34.61 E-value=9.9 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=18.7
Q ss_pred ccccccccchhhhhhhhhcceeecccCCCcc
Q 037395 69 MNCWKPFVNPALMFYFVFACVAWGSWNYKYA 99 (121)
Q Consensus 69 ~~~~k~~~~~~lm~~~~~~~~htCPFCGK~k 99 (121)
+.||+.|.+-+|---- .-.||.||-..
T Consensus 7 ~rCg~~fs~~el~~lP----~IrCpyCGyri 33 (48)
T 4ayb_P 7 GKCWKTFTDEQLKVLP----GVRCPYCGYKI 33 (48)
T ss_dssp CCTTTTCCCCCSCCCS----SSCCTTTCCSC
T ss_pred eccCCCccHHHHhhCC----CcccCccCcEE
Confidence 5688888888873222 25799999753
No 178
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.54 E-value=14 Score=19.01 Aligned_cols=10 Identities=20% Similarity=-0.575 Sum_probs=8.2
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ytq_A 13 YGCSECGKAF 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred cCCCccChhh
Confidence 7899999863
No 179
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.52 E-value=13 Score=19.00 Aligned_cols=11 Identities=9% Similarity=-0.764 Sum_probs=8.6
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2epz_A 12 PFDCIDCGKAF 22 (46)
T ss_dssp SBCCTTTCCCB
T ss_pred CeECCCCCcee
Confidence 37899999863
No 180
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.46 E-value=18 Score=18.47 Aligned_cols=8 Identities=13% Similarity=-0.474 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2em3_A 13 YECKVCSK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCc
Confidence 55666654
No 181
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.24 E-value=12 Score=19.01 Aligned_cols=10 Identities=10% Similarity=-0.622 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2eq4_A 13 YNCKECGKSF 22 (46)
T ss_dssp CCBTTTTBCC
T ss_pred eECCCCCCcc
Confidence 7899999863
No 182
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=34.20 E-value=15 Score=23.64 Aligned_cols=27 Identities=0% Similarity=-0.365 Sum_probs=18.3
Q ss_pred ecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
.||.|+....--...|-=.|+.|+..+
T Consensus 12 ~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 12 ACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp BCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred CCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 499997764433344556799998765
No 183
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=34.09 E-value=16 Score=25.29 Aligned_cols=11 Identities=9% Similarity=-0.393 Sum_probs=6.7
Q ss_pred ecccCCCcceEE
Q 037395 91 WGSWNYKYAIKR 102 (121)
Q Consensus 91 tCPFCGK~kVKR 102 (121)
.||.||.. ++|
T Consensus 150 ~Cp~CG~~-~~~ 160 (165)
T 2lcq_A 150 VCPDCGSK-VKL 160 (165)
T ss_dssp BCTTTCCB-EEE
T ss_pred cCCCCCCc-cee
Confidence 57777765 444
No 184
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.07 E-value=18 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=16.0
Q ss_pred eecccCCCcc--eEEeEEEEeeeCCCCceEec
Q 037395 90 AWGSWNYKYA--IKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 90 htCPFCGK~k--VKR~AVGIWkCkkCgktfAG 119 (121)
..|..|++.- .+|. -+|+.||..|-+
T Consensus 70 ~~C~~C~~~Fs~~~Rr----HHCR~CG~vfC~ 97 (125)
T 1joc_A 70 QNCMACGKGFSVTVRR----HHCRQCGNIFCA 97 (125)
T ss_dssp CBCTTTCCBCCSSSCC----EECTTTCCEECG
T ss_pred CCCcCcCCcccccccc----ccCCCCCeEECh
Confidence 4577777652 3343 478888777643
No 185
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.02 E-value=18 Score=18.33 Aligned_cols=8 Identities=13% Similarity=-0.566 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2eow_A 13 YKCNECGK 20 (46)
T ss_dssp EECTTSCC
T ss_pred eeccccCC
Confidence 55555554
No 186
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=33.99 E-value=22 Score=15.75 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=4.7
Q ss_pred eeC--CCCceE
Q 037395 109 SCK--YCGKVK 117 (121)
Q Consensus 109 kCk--kCgktf 117 (121)
.|. .|++.|
T Consensus 4 ~C~~~~C~k~f 14 (29)
T 2ab3_A 4 VCHFENCGRSF 14 (29)
T ss_dssp EECSTTTCEEE
T ss_pred CCcCCcCcCcc
Confidence 455 555554
No 187
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=33.97 E-value=9.4 Score=26.64 Aligned_cols=29 Identities=17% Similarity=0.019 Sum_probs=21.8
Q ss_pred cccccchhhhhhhhhcceeecccCCCcceEEeEEEEeeeCC
Q 037395 72 WKPFVNPALMFYFVFACVAWGSWNYKYAIKRKVVGIWSCKY 112 (121)
Q Consensus 72 ~k~~~~~~lm~~~~~~~~htCPFCGK~kVKR~AVGIWkCkk 112 (121)
-|+-+++.|- +.|..||+..++ .||.|++
T Consensus 59 aK~TKKi~Lr--------l~C~~C~~~~~~----~~~R~k~ 87 (92)
T 1vq8_3 59 DKPTKKTDLK--------YRCGECGKAHLR----EGWRAGR 87 (92)
T ss_dssp CCSSCBCCEE--------EEETTTCCEECC----CCCBCSC
T ss_pred CcccceEEEE--------EEecccChhhcc----ccceeeE
Confidence 5777777763 899999988776 3677764
No 188
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.87 E-value=15 Score=18.74 Aligned_cols=11 Identities=0% Similarity=-0.559 Sum_probs=8.5
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.|||.-
T Consensus 12 ~~~C~~C~k~f 22 (46)
T 2yso_A 12 SHQCRECGEIF 22 (46)
T ss_dssp CEECTTTCCEE
T ss_pred CEEccccChhh
Confidence 37899999863
No 189
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.76 E-value=20 Score=18.24 Aligned_cols=10 Identities=40% Similarity=1.022 Sum_probs=4.7
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ysp_A 13 YKCEKCGKGY 22 (46)
T ss_dssp EEETTTTEEE
T ss_pred eECCCCCCcc
Confidence 4444444444
No 190
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.69 E-value=19 Score=18.36 Aligned_cols=8 Identities=13% Similarity=-0.400 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2emh_A 13 YICTVCGK 20 (46)
T ss_dssp EECTTTCC
T ss_pred cCCCCCCc
Confidence 55555554
No 191
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.55 E-value=18 Score=21.65 Aligned_cols=30 Identities=10% Similarity=-0.161 Sum_probs=20.3
Q ss_pred ccccccchhhhhhhhhcc---eeecccCCCcceEE
Q 037395 71 CWKPFVNPALMFYFVFAC---VAWGSWNYKYAIKR 102 (121)
Q Consensus 71 ~~k~~~~~~lm~~~~~~~---~htCPFCGK~kVKR 102 (121)
|-+.|....|-.|. ..| .+.|+.||+. ++|
T Consensus 23 C~~~~~~~~L~~H~-~~c~~~~~~C~~C~~~-~~~ 55 (75)
T 2d9k_A 23 CDLELSILKLKEHE-DYCGARTELCGNCGRN-VLV 55 (75)
T ss_dssp SCCEECHHHHHHHH-HHHHHCEEECSSSCCE-EET
T ss_pred cChHhhHHHHHHHH-hHcCCCceEcccCCCc-CcH
Confidence 55666667777776 445 5789999885 444
No 192
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.39 E-value=13 Score=24.16 Aligned_cols=10 Identities=0% Similarity=-0.485 Sum_probs=8.0
Q ss_pred eeecccCCCc
Q 037395 89 VAWGSWNYKY 98 (121)
Q Consensus 89 ~htCPFCGK~ 98 (121)
.-+||.||..
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 4689999975
No 193
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=33.33 E-value=19 Score=18.35 Aligned_cols=8 Identities=13% Similarity=-0.566 Sum_probs=4.8
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2ema_A 13 YKCNECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred cCCCCCcc
Confidence 55666665
No 194
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.25 E-value=19 Score=18.44 Aligned_cols=8 Identities=13% Similarity=-0.578 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2emf_A 13 FECTECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCc
Confidence 55666655
No 195
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.18 E-value=15 Score=18.78 Aligned_cols=10 Identities=0% Similarity=-0.515 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 11 ~~C~~C~k~f 20 (43)
T 2yrm_A 11 FFCNECDCRF 20 (43)
T ss_dssp BCCSSSCCCB
T ss_pred EECCCCCCee
Confidence 7899998864
No 196
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=33.02 E-value=14 Score=18.85 Aligned_cols=10 Identities=0% Similarity=-0.741 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.||+.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2em0_A 13 WKCRECDMCF 22 (46)
T ss_dssp CCCSSSCCCC
T ss_pred eECCCCCccc
Confidence 7899999863
No 197
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.98 E-value=21 Score=18.16 Aligned_cols=10 Identities=40% Similarity=0.989 Sum_probs=4.9
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
+.|..|++.|
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2en1_A 13 FKCEECGKRF 22 (46)
T ss_dssp EEETTTTEEE
T ss_pred eeCCCCCccc
Confidence 4455555544
No 198
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.95 E-value=23 Score=19.71 Aligned_cols=9 Identities=0% Similarity=-0.710 Sum_probs=4.8
Q ss_pred eecc-cCCCc
Q 037395 90 AWGS-WNYKY 98 (121)
Q Consensus 90 htCP-FCGK~ 98 (121)
|.|+ .|||.
T Consensus 37 ~~C~~~C~k~ 46 (66)
T 2eod_A 37 VACPNQCGVG 46 (66)
T ss_dssp EECTTCCSCC
T ss_pred ccCCcccCcc
Confidence 4555 55554
No 199
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.73 E-value=19 Score=18.38 Aligned_cols=8 Identities=25% Similarity=-0.549 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2yto_A 13 YKCSDCGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred EECcccCC
Confidence 55666654
No 200
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.67 E-value=13 Score=18.96 Aligned_cols=10 Identities=10% Similarity=-0.602 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ytr_A 13 YKCNECGKAF 22 (46)
T ss_dssp TCCTTTCCCC
T ss_pred cCCCCCCCcc
Confidence 7899999863
No 201
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=32.57 E-value=10 Score=32.77 Aligned_cols=62 Identities=18% Similarity=0.134 Sum_probs=17.5
Q ss_pred cccceeeccccccc--cccc-ccccccccchhhhhhhh-hcceeecccCCCcce-EEeEEEEeeeCCCCc
Q 037395 51 FDHGFILSGFAEKD--DQEG-MNCWKPFVNPALMFYFV-FACVAWGSWNYKYAI-KRKVVGIWSCKYCGK 115 (121)
Q Consensus 51 ~~~~~~~~~~~~~~--~~~g-~~~~k~~~~~~lm~~~~-~~~~htCPFCGK~kV-KR~AVGIWkCkkCgk 115 (121)
+.-|.|+--+-... +.+. +++|+-+.+ . +-||- ..-.-.|+.||.... .+...+ |.|.+||.
T Consensus 500 ~~GG~i~~v~l~~~~~n~~a~~~lv~~~~~-~-i~Y~~~n~~~~~C~~CGy~~~~~~~~~~-~~CP~Cg~ 566 (605)
T 1h7b_A 500 ATGGHISYVELPDMKNNLKGLEAVWDYAAQ-H-LDYFGVNMPVDKCFTCGSTHEMTPTENG-FVCSICGE 566 (605)
T ss_dssp CTTBCCEEEECCCCTTCHHHHHHHHHHHHH-H-CSEEEEECCEEET------------------------
T ss_pred cCCeeEEEEEcCCCCCCHHHHHHHHHHHHh-C-CCeEEeCCCCccCcccCCcCccCccccC-CcCCCCCC
Confidence 34466665553321 1222 344444332 1 34544 334568999997653 433222 99999995
No 202
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.14 E-value=20 Score=18.13 Aligned_cols=8 Identities=13% Similarity=-0.429 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2epw_A 13 CKCTECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eeCCCCCC
Confidence 55555554
No 203
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.10 E-value=21 Score=18.10 Aligned_cols=8 Identities=13% Similarity=-0.599 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2eor_A 13 YNCEECGK 20 (46)
T ss_dssp EECTTTCC
T ss_pred ccCCCCCC
Confidence 55666655
No 204
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=32.08 E-value=20 Score=22.93 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=11.4
Q ss_pred ecccCCCc--ceEEeEEEEeeeCCCCceE
Q 037395 91 WGSWNYKY--AIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 91 tCPFCGK~--kVKR~AVGIWkCkkCgktf 117 (121)
.|..|++. .++|. -+|+.||+.|
T Consensus 23 ~C~~C~~~Fs~~~Rr----HHCR~CG~v~ 47 (84)
T 1z2q_A 23 ACNGCGCVFTTTVRR----HHCRNCGYVL 47 (84)
T ss_dssp BCTTTCCBCCTTSCC----EECTTTCCEE
T ss_pred CCcCcCCccccchhc----ccccCCCcEE
Confidence 45555554 13333 3566666555
No 205
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.89 E-value=20 Score=18.29 Aligned_cols=8 Identities=13% Similarity=-0.603 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2em2_A 13 FKCKECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred EECCcCCc
Confidence 55666655
No 206
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=31.76 E-value=30 Score=20.71 Aligned_cols=31 Identities=10% Similarity=-0.059 Sum_probs=18.5
Q ss_pred eecccCCCcce----EEeEEEEee-----eCCCCceEecC
Q 037395 90 AWGSWNYKYAI----KRKVVGIWS-----CKYCGKVKAGG 120 (121)
Q Consensus 90 htCPFCGK~kV----KR~AVGIWk-----CkkCgktfAGG 120 (121)
..|+.|++... -+..-..|+ |..|++.+.++
T Consensus 8 ~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~ 47 (81)
T 1a7i_A 8 NKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDST 47 (81)
T ss_dssp CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSS
T ss_pred CcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCC
Confidence 67888877542 222224674 77787776554
No 207
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.60 E-value=16 Score=18.69 Aligned_cols=10 Identities=10% Similarity=-0.711 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~F 22 (46)
T 2elz_A 13 YKCEDCGKGY 22 (46)
T ss_dssp CBCSSSCCBC
T ss_pred eeCcccCchh
Confidence 7899999863
No 208
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.58 E-value=20 Score=18.03 Aligned_cols=8 Identities=25% Similarity=-0.346 Sum_probs=4.2
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 11 ~~C~~C~k 18 (44)
T 2emx_A 11 FGCSCCEK 18 (44)
T ss_dssp EECSSSSC
T ss_pred ccCCCCCc
Confidence 45555554
No 209
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.54 E-value=21 Score=18.13 Aligned_cols=8 Identities=13% Similarity=-0.591 Sum_probs=4.3
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2ytg_A 13 FKCGECGK 20 (46)
T ss_dssp EECTTTCC
T ss_pred eECCCCCc
Confidence 45555554
No 210
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.38 E-value=22 Score=18.02 Aligned_cols=8 Identities=13% Similarity=-0.524 Sum_probs=4.2
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2en8_A 13 HTCDECGK 20 (46)
T ss_dssp EECTTTCC
T ss_pred eECCCcCc
Confidence 45555554
No 211
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=31.34 E-value=34 Score=26.82 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=20.9
Q ss_pred eeecccCCCcceE------EeE----EEEeeeCCCCceE
Q 037395 89 VAWGSWNYKYAIK------RKV----VGIWSCKYCGKVK 117 (121)
Q Consensus 89 ~htCPFCGK~kVK------R~A----VGIWkCkkCgktf 117 (121)
.++||.||...+. |.| +=...|..||..|
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 4789999987642 222 3367899999886
No 212
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.32 E-value=22 Score=18.10 Aligned_cols=8 Identities=13% Similarity=-0.611 Sum_probs=4.7
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2eq0_A 13 YKCHECGK 20 (46)
T ss_dssp EECTTTCC
T ss_pred eECCCCCc
Confidence 55666655
No 213
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.27 E-value=21 Score=18.13 Aligned_cols=8 Identities=25% Similarity=-0.474 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2eml_A 13 YECSVCGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eeCCCcCC
Confidence 55555654
No 214
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=31.19 E-value=23 Score=26.22 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=4.9
Q ss_pred eeeCCCCceE
Q 037395 108 WSCKYCGKVK 117 (121)
Q Consensus 108 WkCkkCgktf 117 (121)
-+|+.||..|
T Consensus 181 hHCR~CG~v~ 190 (226)
T 3zyq_A 181 HHCRACGQIF 190 (226)
T ss_dssp EECTTTCCEE
T ss_pred cccCCCcCEe
Confidence 3455555544
No 215
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.11 E-value=22 Score=18.11 Aligned_cols=8 Identities=25% Similarity=-0.441 Sum_probs=4.4
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2ep2_A 13 YECSICGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred cCCCCCCc
Confidence 45555554
No 216
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.09 E-value=15 Score=18.62 Aligned_cols=8 Identities=13% Similarity=-0.533 Sum_probs=4.2
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2eq3_A 13 YECNQCGK 20 (46)
T ss_dssp SEETTTTE
T ss_pred eECCCCCh
Confidence 45555554
No 217
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.06 E-value=22 Score=18.11 Aligned_cols=8 Identities=13% Similarity=-0.566 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2ytk_A 13 YKCNECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred EeCCcCCC
Confidence 55555554
No 218
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.93 E-value=17 Score=18.29 Aligned_cols=8 Identities=13% Similarity=-0.632 Sum_probs=4.3
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (44)
T 2eoj_A 13 YECCECGK 20 (44)
T ss_dssp CEETTTTE
T ss_pred eeCCCCCC
Confidence 45555554
No 219
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=30.73 E-value=22 Score=17.98 Aligned_cols=8 Identities=13% Similarity=-0.603 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2em9_A 13 YNCKECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCcccc
Confidence 45555554
No 220
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.60 E-value=22 Score=17.97 Aligned_cols=8 Identities=13% Similarity=-0.197 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2eme_A 13 YVCDYCGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCh
Confidence 55666654
No 221
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.39 E-value=23 Score=18.03 Aligned_cols=8 Identities=13% Similarity=-0.566 Sum_probs=4.7
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2ene_A 13 YKCNECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCc
Confidence 55666655
No 222
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.37 E-value=14 Score=19.00 Aligned_cols=10 Identities=10% Similarity=-0.678 Sum_probs=8.1
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ytm_A 13 YKCMECGKAF 22 (46)
T ss_dssp SSBTTTTBCC
T ss_pred cCCCCCCchh
Confidence 7899999863
No 223
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.27 E-value=23 Score=18.02 Aligned_cols=8 Identities=13% Similarity=-0.595 Sum_probs=4.8
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2em7_A 13 YKCEECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred ccCCCccc
Confidence 55666665
No 224
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.12 E-value=15 Score=18.80 Aligned_cols=10 Identities=20% Similarity=-0.522 Sum_probs=8.0
Q ss_pred eecccCCCcc
Q 037395 90 AWGSWNYKYA 99 (121)
Q Consensus 90 htCPFCGK~k 99 (121)
|.|+.|||.-
T Consensus 13 ~~C~~C~k~f 22 (46)
T 2ytt_A 13 YQCSECGKSF 22 (46)
T ss_dssp TCCSSSCCCC
T ss_pred eeCCCCCccc
Confidence 6799999863
No 225
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.06 E-value=23 Score=18.00 Aligned_cols=8 Identities=13% Similarity=-0.566 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2yu8_A 13 YKCNECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCcCCc
Confidence 55565654
No 226
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=29.90 E-value=8.5 Score=21.57 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=17.3
Q ss_pred eeeccc--CCCcceE--------EeEEEEeeeCC---CCceEe
Q 037395 89 VAWGSW--NYKYAIK--------RKVVGIWSCKY---CGKVKA 118 (121)
Q Consensus 89 ~htCPF--CGK~kVK--------R~AVGIWkCkk---CgktfA 118 (121)
.|.|+. |++.-.. |.-.| +.|.. |++++.
T Consensus 31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~~~f~ 72 (85)
T 2j7j_A 31 PYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGK 72 (85)
T ss_dssp CEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSCCCEES
T ss_pred CeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCCCCccC
Confidence 367877 8765321 22233 77877 887764
No 227
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=29.64 E-value=25 Score=23.75 Aligned_cols=7 Identities=14% Similarity=-0.324 Sum_probs=3.1
Q ss_pred ecccCCC
Q 037395 91 WGSWNYK 97 (121)
Q Consensus 91 tCPFCGK 97 (121)
.|+.|++
T Consensus 20 ~C~~C~~ 26 (81)
T 2jrp_A 20 HCETCAK 26 (81)
T ss_dssp ECTTTCC
T ss_pred ECccccc
Confidence 3444444
No 228
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.44 E-value=24 Score=17.84 Aligned_cols=8 Identities=13% Similarity=-0.507 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2emm_A 13 HKCNECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eeCCCCCh
Confidence 55566654
No 229
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.24 E-value=23 Score=21.48 Aligned_cols=12 Identities=25% Similarity=0.664 Sum_probs=9.1
Q ss_pred EeeeCCCCceEe
Q 037395 107 IWSCKYCGKVKA 118 (121)
Q Consensus 107 IWkCkkCgktfA 118 (121)
+|+|.-||++.-
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 588888888764
No 230
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.94 E-value=17 Score=19.58 Aligned_cols=28 Identities=18% Similarity=-0.095 Sum_probs=16.9
Q ss_pred ccccccch-hhhhhhh----hcceeecccCCCc
Q 037395 71 CWKPFVNP-ALMFYFV----FACVAWGSWNYKY 98 (121)
Q Consensus 71 ~~k~~~~~-~lm~~~~----~~~~htCPFCGK~ 98 (121)
|-|.|... .|..|.. ..=.|.|+.||+.
T Consensus 18 C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~ 50 (54)
T 2eps_A 18 CGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSG 50 (54)
T ss_dssp SCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCS
T ss_pred CCcccCCHHHHHHHHHHhcCCCCCccCCCCCCC
Confidence 55666543 4555643 1234899999985
No 231
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.87 E-value=25 Score=17.86 Aligned_cols=8 Identities=13% Similarity=-0.437 Sum_probs=4.6
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|+|
T Consensus 13 ~~C~~C~k 20 (46)
T 2ep0_A 13 YKCDVCHK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eeCcccCc
Confidence 55666654
No 232
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=28.86 E-value=14 Score=23.34 Aligned_cols=20 Identities=15% Similarity=0.322 Sum_probs=11.7
Q ss_pred eecccCCCcceEEeEEEEeeeCCCC
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCG 114 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCg 114 (121)
-.||.||...+.... |..||
T Consensus 31 ~~c~~cG~~~~pH~v-----c~~CG 50 (60)
T 2zjr_Z 31 TECPQCHGKKLSHHI-----CPNCG 50 (60)
T ss_dssp EECTTTCCEECTTBC-----CTTTC
T ss_pred eECCCCCCEeCCceE-----cCCCC
Confidence 467777777544332 55565
No 233
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.78 E-value=27 Score=17.70 Aligned_cols=8 Identities=13% Similarity=-0.587 Sum_probs=3.8
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2en6_A 13 YGCNECGK 20 (46)
T ss_dssp EEETTTTE
T ss_pred eECCCCCc
Confidence 44555543
No 234
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=28.63 E-value=3.5 Score=26.74 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=12.8
Q ss_pred chhhhhhhhhcceeecccCCC
Q 037395 77 NPALMFYFVFACVAWGSWNYK 97 (121)
Q Consensus 77 ~~~lm~~~~~~~~htCPFCGK 97 (121)
+|.+.-||- |+||+|.+
T Consensus 22 ~~~vvEf~d----y~Cp~C~~ 38 (184)
T 4dvc_A 22 SPVVSEFFS----FYCPHCNT 38 (184)
T ss_dssp SCEEEEEEC----TTCHHHHH
T ss_pred CCEEEEEEC----CCCHhHHH
Confidence 456777776 99999964
No 235
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=27.75 E-value=26 Score=17.88 Aligned_cols=8 Identities=25% Similarity=-0.391 Sum_probs=4.5
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 13 ~~C~~C~k 20 (46)
T 2el6_A 13 YKCSQCEK 20 (46)
T ss_dssp EECSSSSC
T ss_pred eECCCCCc
Confidence 55666655
No 236
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.35 E-value=27 Score=17.69 Aligned_cols=8 Identities=25% Similarity=-0.512 Sum_probs=4.4
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2ytd_A 13 YKCSECGK 20 (46)
T ss_dssp EECSSSCC
T ss_pred eECCCCCC
Confidence 45555554
No 237
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=26.83 E-value=14 Score=26.05 Aligned_cols=23 Identities=17% Similarity=0.081 Sum_probs=14.8
Q ss_pred ecccCCCcceEEeEEEEeeeCCCCce
Q 037395 91 WGSWNYKYAIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 91 tCPFCGK~kVKR~AVGIWkCkkCgkt 116 (121)
.|+.||..+.-- -=+.|.+||+.
T Consensus 18 lCrRCG~~sfH~---qK~~CgkCGYp 40 (97)
T 2zkr_2 18 LCRRCGSKAYHL---QKSTCGKCGYP 40 (97)
T ss_dssp CCTTTCSSCEET---TSCCBTTTCTT
T ss_pred cCCCCCCccCcC---ccccCcccCCc
Confidence 588888876411 12578888864
No 238
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=26.77 E-value=33 Score=24.73 Aligned_cols=11 Identities=18% Similarity=-0.342 Sum_probs=6.1
Q ss_pred eeecccCCCcc
Q 037395 89 VAWGSWNYKYA 99 (121)
Q Consensus 89 ~htCPFCGK~k 99 (121)
.|.|+.||-.-
T Consensus 138 ~~~C~~CG~i~ 148 (170)
T 3pwf_A 138 VYICPICGYTA 148 (170)
T ss_dssp EEECTTTCCEE
T ss_pred eeEeCCCCCee
Confidence 45566666543
No 239
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=26.33 E-value=39 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=17.7
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
-.||.|..... |.+ |.++|..|.+.|
T Consensus 33 ~~CP~Cq~eL~-~~g-~~~hC~~C~~~f 58 (101)
T 2jne_A 33 LHCPQCQHVLD-QDN-GHARCRSCGEFI 58 (101)
T ss_dssp CBCSSSCSBEE-EET-TEEEETTTCCEE
T ss_pred ccCccCCCcce-ecC-CEEECccccchh
Confidence 46888877644 443 477788888765
No 240
>3iz6_T 40S ribosomal protein S21 (S21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.12 E-value=5.3 Score=27.56 Aligned_cols=41 Identities=32% Similarity=0.445 Sum_probs=30.9
Q ss_pred CCCCcccccccccCccccccceeecccccccccccccccccccc
Q 037395 34 SRVPSICSCANRITPHAFDHGFILSGFAEKDDQEGMNCWKPFVN 77 (121)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~k~~~~ 77 (121)
.-+|--||=.|||. +|-||+-|---+++-| ..|.- -.+|+.
T Consensus 11 LYiPRKCSaTNriI-~AKDHaSVQInv~~vd-~~G~~-~g~~~t 51 (82)
T 3iz6_T 11 LYVPRKCSATNRII-TAKDHASVQINIGHVD-ENGLY-DGRFTT 51 (82)
T ss_dssp CHHHHHHHHHHHHH-HTTSSSSCCCCCEEEC-SSSCE-EEECCC
T ss_pred EeccccccccCCcc-ccCCceeEEEEEEEEc-CCccC-CCCeeE
Confidence 35789999999997 5899999999999888 45543 334443
No 241
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=24.99 E-value=24 Score=19.52 Aligned_cols=11 Identities=27% Similarity=0.694 Sum_probs=9.2
Q ss_pred EEeeeCCCCce
Q 037395 106 GIWSCKYCGKV 116 (121)
Q Consensus 106 GIWkCkkCgkt 116 (121)
|=|.|.+|+..
T Consensus 4 gDW~C~~C~~~ 14 (32)
T 2lk0_A 4 EDWLCNKCCLN 14 (32)
T ss_dssp SEEECTTTCCE
T ss_pred CCCCcCcCcCC
Confidence 67999999875
No 242
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.36 E-value=42 Score=21.85 Aligned_cols=9 Identities=0% Similarity=-0.614 Sum_probs=4.3
Q ss_pred eeecccCCC
Q 037395 89 VAWGSWNYK 97 (121)
Q Consensus 89 ~htCPFCGK 97 (121)
+|-|-.||+
T Consensus 25 rHHCR~CG~ 33 (88)
T 1wfk_A 25 EYGCKNCGR 33 (88)
T ss_dssp EEECSSSCC
T ss_pred cccCCCCCC
Confidence 355555544
No 243
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=24.27 E-value=33 Score=18.96 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=6.6
Q ss_pred eeeCCCCceEe
Q 037395 108 WSCKYCGKVKA 118 (121)
Q Consensus 108 WkCkkCgktfA 118 (121)
+.|..|++.|.
T Consensus 50 ~~C~~C~~~f~ 60 (73)
T 1f2i_G 50 FQCRICMRNFS 60 (73)
T ss_dssp EECTTTCCEES
T ss_pred eECCCCCchhC
Confidence 56666666653
No 244
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=24.09 E-value=17 Score=23.06 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=11.2
Q ss_pred eecccCCCcceEEeEEEEeeeCCCC
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCG 114 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCg 114 (121)
-.||.||...+.=.+ |..||
T Consensus 31 ~~c~~cGe~~~~H~v-----c~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMKPPHTV-----CPECG 50 (60)
T ss_dssp EECTTTCCEECTTSC-----CTTTC
T ss_pred eECCCCCCeecceEE-----cCCCC
Confidence 467777765433322 66665
No 245
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.77 E-value=25 Score=17.77 Aligned_cols=8 Identities=13% Similarity=-0.566 Sum_probs=4.2
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.||+
T Consensus 13 ~~C~~C~k 20 (46)
T 2eoe_A 13 YKCNECGK 20 (46)
T ss_dssp SEETTTTE
T ss_pred eECCCcCh
Confidence 45555554
No 246
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=23.65 E-value=28 Score=16.05 Aligned_cols=9 Identities=11% Similarity=-0.149 Sum_probs=6.3
Q ss_pred eecc--cCCCc
Q 037395 90 AWGS--WNYKY 98 (121)
Q Consensus 90 htCP--FCGK~ 98 (121)
|.|+ .|||.
T Consensus 3 ~~C~~~~C~k~ 13 (31)
T 1sp2_A 3 FMCTWSYCGKR 13 (31)
T ss_dssp CBCCSTTCCCB
T ss_pred cCCcCCCCCcc
Confidence 5676 78775
No 247
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=23.16 E-value=19 Score=26.60 Aligned_cols=35 Identities=9% Similarity=-0.107 Sum_probs=25.2
Q ss_pred hhhhhhhhhcceeecccCCCcce---------------EEeEEEEeeeCCCCce
Q 037395 78 PALMFYFVFACVAWGSWNYKYAI---------------KRKVVGIWSCKYCGKV 116 (121)
Q Consensus 78 ~~lm~~~~~~~~htCPFCGK~kV---------------KR~AVGIWkCkkCgkt 116 (121)
+..-.+|+ -+|+-||-..- |..|-=+|+|+.|++.
T Consensus 30 ~~~~~~fk----vkC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~re 79 (164)
T 1zso_A 30 DEYLWIFN----IRDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPKY 79 (164)
T ss_dssp TTCCEEEE----EEETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSCC
T ss_pred CCcEEEEE----EEECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCCc
Confidence 44445555 88999987532 5577788999999874
No 248
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=23.11 E-value=47 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=19.7
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceEec
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktfAG 119 (121)
..|+.|+... .+|-|=.||+..-|
T Consensus 25 ~~C~~C~~~~------~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 25 QPCGDCGTIQ------ENWVCLSCYQVYCG 48 (109)
T ss_dssp CCCTTTCCCS------SEEEETTTCCEEEC
T ss_pred CcCccccCCC------CeeeeeecCccccC
Confidence 6799998763 57999999998754
No 249
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=22.98 E-value=31 Score=21.57 Aligned_cols=11 Identities=27% Similarity=1.153 Sum_probs=8.5
Q ss_pred EEeeeCCCCce
Q 037395 106 GIWSCKYCGKV 116 (121)
Q Consensus 106 GIWkCkkCgkt 116 (121)
.-|+|.+|++.
T Consensus 12 D~WkC~~C~~~ 22 (46)
T 2c6a_A 12 DYWKCTSCNEM 22 (46)
T ss_dssp GCEECTTTCCE
T ss_pred ceEeccccccc
Confidence 46999999854
No 250
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.82 E-value=25 Score=19.60 Aligned_cols=28 Identities=14% Similarity=-0.023 Sum_probs=17.3
Q ss_pred ccccccchh-hhhhhhh---cceeecccCCCc
Q 037395 71 CWKPFVNPA-LMFYFVF---ACVAWGSWNYKY 98 (121)
Q Consensus 71 ~~k~~~~~~-lm~~~~~---~~~htCPFCGK~ 98 (121)
|-+.|.... |..|... .=.|.|+.||+.
T Consensus 46 C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~ 77 (79)
T 2dlk_A 46 CGKSFNFKKHLKEHMKLHSDTRDYICEFSGPS 77 (79)
T ss_dssp TCCEESSHHHHHHHHHHHHTSCCCSCCSSSCC
T ss_pred CcCccCCHHHHHHHHHHhCCCCCeeCCCCCCC
Confidence 667776544 4445432 234889999874
No 251
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=22.82 E-value=28 Score=24.89 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=18.2
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCce
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKV 116 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgkt 116 (121)
..|+.||..-++ .+ ..-+|..||.+
T Consensus 141 a~~~~~g~~m~~-~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVR-EG-DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEE-CS-SSEECSSSCCE
T ss_pred ecccccCCceEE-CC-CEEECCCCCCE
Confidence 568888876655 44 67888888865
No 252
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=22.59 E-value=30 Score=18.61 Aligned_cols=9 Identities=11% Similarity=-0.340 Sum_probs=7.3
Q ss_pred ecccCCCcc
Q 037395 91 WGSWNYKYA 99 (121)
Q Consensus 91 tCPFCGK~k 99 (121)
.|+.|+|+.
T Consensus 5 ~C~~C~k~V 13 (31)
T 1zfo_A 5 NCARCGKIV 13 (31)
T ss_dssp BCSSSCSBC
T ss_pred cCCccCCEE
Confidence 689999874
No 253
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=22.54 E-value=39 Score=21.91 Aligned_cols=9 Identities=56% Similarity=1.228 Sum_probs=4.3
Q ss_pred eeCCCCceE
Q 037395 109 SCKYCGKVK 117 (121)
Q Consensus 109 kCkkCgktf 117 (121)
+|+.||..|
T Consensus 38 hCr~CG~v~ 46 (90)
T 3t7l_A 38 HCRACGKVF 46 (90)
T ss_dssp ECTTTCCEE
T ss_pred cccCCCCEE
Confidence 455555444
No 254
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=22.47 E-value=55 Score=25.08 Aligned_cols=24 Identities=17% Similarity=-0.024 Sum_probs=17.3
Q ss_pred ecccCCCcceEEe--EEEEeeeCCCC
Q 037395 91 WGSWNYKYAIKRK--VVGIWSCKYCG 114 (121)
Q Consensus 91 tCPFCGK~kVKR~--AVGIWkCkkCg 114 (121)
.|+.||....|-. +-+.|.|..|-
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCeEEEEEECCCCeEECCCCC
Confidence 7999997644322 34689999995
No 255
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=22.45 E-value=35 Score=27.16 Aligned_cols=25 Identities=12% Similarity=-0.073 Sum_probs=18.4
Q ss_pred ecccCCCcceEEeE-----EEEeeeCCCCce
Q 037395 91 WGSWNYKYAIKRKV-----VGIWSCKYCGKV 116 (121)
Q Consensus 91 tCPFCGK~kVKR~A-----VGIWkCkkCgkt 116 (121)
.|+.||.+. +|.. -..|.|..|-|-
T Consensus 253 pC~~CGt~I-~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHSKI-TVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCCBC-EEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCCEE-EEEEecCCCCCEEECCCcccc
Confidence 899999754 4433 458999999763
No 256
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=22.31 E-value=54 Score=18.56 Aligned_cols=31 Identities=13% Similarity=0.013 Sum_probs=17.3
Q ss_pred eecccCCCcce-----EEeEEEEee-----eCCCCceEecC
Q 037395 90 AWGSWNYKYAI-----KRKVVGIWS-----CKYCGKVKAGG 120 (121)
Q Consensus 90 htCPFCGK~kV-----KR~AVGIWk-----CkkCgktfAGG 120 (121)
-.|..|++... -+..-..|+ |..|++.+.++
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~ 52 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEG 52 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGG
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCC
Confidence 46777777532 122334675 66677665543
No 257
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=22.03 E-value=36 Score=21.42 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=17.2
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
-.|..||+.. .|++ .+|+.|+.+.
T Consensus 36 t~C~~C~~~l-~~qG---~kC~~C~~~c 59 (72)
T 2fnf_X 36 GWCDLCGREV-LRQA---LRCANCKFTC 59 (72)
T ss_dssp CBCTTTSSBC-SSCC---EECTTSSCEE
T ss_pred cchhhhhHHH-HhCc---CccCCCCCee
Confidence 4588898877 4444 5898888764
No 258
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.96 E-value=25 Score=23.01 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=15.9
Q ss_pred eecccCCCc-ceEEeEEEEeeeCCCCceEec
Q 037395 90 AWGSWNYKY-AIKRKVVGIWSCKYCGKVKAG 119 (121)
Q Consensus 90 htCPFCGK~-kVKR~AVGIWkCkkCgktfAG 119 (121)
..|..|+|. .+- -.+| .||.+|-+
T Consensus 16 ~rC~~C~kkvgl~-----~f~C-rCg~~FC~ 40 (64)
T 1wg2_A 16 NRCFSCNKKVGVM-----GFKC-KCGSTFCG 40 (64)
T ss_dssp CSCTTTCCCCTTS-----CEEC-TTSCEECS
T ss_pred CcChhhCCccccc-----CeEe-ecCCEecc
Confidence 568888775 221 2788 79888754
No 259
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=21.83 E-value=44 Score=22.49 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.8
Q ss_pred EeeeCCCCceEe
Q 037395 107 IWSCKYCGKVKA 118 (121)
Q Consensus 107 IWkCkkCgktfA 118 (121)
+|.|.-||++.-
T Consensus 27 ~y~C~vCGyvYD 38 (81)
T 2kn9_A 27 LFRCIQCGFEYD 38 (81)
T ss_dssp EEEETTTCCEEE
T ss_pred eEEeCCCCEEEc
Confidence 588888887764
No 260
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=21.72 E-value=40 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=17.2
Q ss_pred eecccCCCcceEEeEEEEeeeCCCCceE
Q 037395 90 AWGSWNYKYAIKRKVVGIWSCKYCGKVK 117 (121)
Q Consensus 90 htCPFCGK~kVKR~AVGIWkCkkCgktf 117 (121)
-.|..||+.. .|++ .+|+.|+.+.
T Consensus 23 t~C~~C~~~i-~kqg---~kC~~C~~~c 46 (59)
T 1rfh_A 23 GWCDLCGREV-LRQA---LRCANCKFTC 46 (59)
T ss_dssp EECTTTCSEE-CSCC---EECTTTSCEE
T ss_pred eEchhcchhh-hhCc---cEeCCCCCeE
Confidence 4588898877 4444 5898888764
No 261
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.45 E-value=30 Score=17.55 Aligned_cols=8 Identities=0% Similarity=-0.728 Sum_probs=4.4
Q ss_pred eecccCCC
Q 037395 90 AWGSWNYK 97 (121)
Q Consensus 90 htCPFCGK 97 (121)
|.|+.|||
T Consensus 11 ~~C~~C~k 18 (45)
T 2epq_A 11 YSCPVCGL 18 (45)
T ss_dssp SEETTTTE
T ss_pred CcCCCCCc
Confidence 45555554
No 262
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=21.28 E-value=61 Score=24.56 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=17.1
Q ss_pred ecccCCCcceEEe--EEEEeeeCCCC
Q 037395 91 WGSWNYKYAIKRK--VVGIWSCKYCG 114 (121)
Q Consensus 91 tCPFCGK~kVKR~--AVGIWkCkkCg 114 (121)
.|+.||....+-. +-+.|.|..|-
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6999987643322 34789999995
No 263
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.18 E-value=44 Score=22.71 Aligned_cols=13 Identities=31% Similarity=0.841 Sum_probs=10.1
Q ss_pred EEeeeCCCCceEe
Q 037395 106 GIWSCKYCGKVKA 118 (121)
Q Consensus 106 GIWkCkkCgktfA 118 (121)
.+|.|.-||++.-
T Consensus 34 ~~y~C~vCGyvYD 46 (87)
T 1s24_A 34 LKWICITCGHIYD 46 (87)
T ss_dssp CEEEETTTTEEEE
T ss_pred ceEECCCCCeEec
Confidence 3688988988764
No 264
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=21.04 E-value=61 Score=24.68 Aligned_cols=25 Identities=12% Similarity=0.101 Sum_probs=17.7
Q ss_pred eecccCCCcceEEe--EEEEeeeCCCC
Q 037395 90 AWGSWNYKYAIKRK--VVGIWSCKYCG 114 (121)
Q Consensus 90 htCPFCGK~kVKR~--AVGIWkCkkCg 114 (121)
-.|+.||....+-. +-+.|.|..|-
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 36999997743332 34789999995
No 265
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=20.20 E-value=39 Score=16.47 Aligned_cols=9 Identities=11% Similarity=-0.377 Sum_probs=6.6
Q ss_pred eeccc--CCCc
Q 037395 90 AWGSW--NYKY 98 (121)
Q Consensus 90 htCPF--CGK~ 98 (121)
|.|++ |||.
T Consensus 9 ~~C~~~~C~k~ 19 (37)
T 1va1_A 9 HICHIQGCGKV 19 (37)
T ss_dssp EECCSTTCCCE
T ss_pred CCCCCCCCCCc
Confidence 77875 8875
No 266
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.11 E-value=36 Score=15.67 Aligned_cols=10 Identities=10% Similarity=-0.559 Sum_probs=6.8
Q ss_pred eecc--cCCCcc
Q 037395 90 AWGS--WNYKYA 99 (121)
Q Consensus 90 htCP--FCGK~k 99 (121)
|.|+ .||+.-
T Consensus 4 ~~C~~~~C~k~f 15 (32)
T 1zfd_A 4 YSCDHPGCDKAF 15 (32)
T ss_dssp BCCCCTTCCCCB
T ss_pred CcCcCCCCCCcc
Confidence 6677 687753
Done!