BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037402
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 4 LSGILFELLAVCLGVDRKHYKKF---FEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
L+ +F+ L+V LG++ +K E+ M++N+YP C L LG H D S++
Sbjct: 179 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 238
Query: 61 TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
T +L V GL++F KW T + PD++V+ IGDT LSNG YKS LHR +VN E+ R
Sbjct: 239 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 121 RSLAFFVTPKADKVV-RPPQDLICREGTRLYPDFTWSQ 157
S A F P DK+V +P +++ E +P T++Q
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 336
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 4 LSGILFELLAVCLGVDRKHYKKF---FEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
L+ +F+ L+V LG++ +K E+ M++N+YP C L LG H D S++
Sbjct: 178 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSAL 237
Query: 61 TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
T +L V GL++F KW T + PD++V+ IGDT LSNG YKS LHR +VN E+ R
Sbjct: 238 TFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 297
Query: 121 RSLAFFVTPKADKVV-RPPQDLICREGTRLYPDFTWSQ 157
S A F P DK+V +P +++ E +P T++Q
Sbjct: 298 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQ 335
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 4 LSGILFELLAVCLGVDRKHYKKF---FEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSI 60
L+ +F+ L+V LG++ +K E+ ++N+YP C L LG H D S++
Sbjct: 179 LATKVFKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSAL 238
Query: 61 TILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERER 120
T +L V GL++F KW T + PD++V IGDT LSNG YKS LHR +VN E+ R
Sbjct: 239 TFILHNXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVR 298
Query: 121 RSLAFFVTPKADKVV-RPPQDLICREGTRLYPDFTWSQ 157
S A F P DK+V +P + + E +P T++Q
Sbjct: 299 ISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQ 336
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 87/186 (46%), Gaps = 19/186 (10%)
Query: 1 MWKLSGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNF------YPPCNNSALTLGTSPH 54
+ KL+ L +LL LG+++ + K F Y NF YPPC L G H
Sbjct: 121 LEKLAEELLDLLCENLGLEKGYLKNAF---YGSKGPNFGTKVSNYPPCPKPDLIKGLRAH 177
Query: 55 YDPSSITILLQE-RVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAV 113
D I +L Q+ +V GL++ + +W V P ++V+ +GD ++NG YKS HR +
Sbjct: 178 TDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVI 237
Query: 114 VNGERERRSLAFFVTPKADKVVRPPQDLI---CREGTRLYPDFTWSQL------LGFTQK 164
+ R SLA F P +D V+ P L+ E ++YP F + L F K
Sbjct: 238 AQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAK 297
Query: 165 HHRVDA 170
R +A
Sbjct: 298 EPRFEA 303
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 5 SGILFELLAVCLGVDRKHYKKFFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILL 64
G + E +A L ++R +K +DG S++RL YPP A + H D ++IT+LL
Sbjct: 142 GGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLL 201
Query: 65 QERVEGLEVFS-NNKWQTVRPRPDALVIIIGDTFMALSNGIYKSCLHRAVVNGERERRSL 123
GLEV + +W + P P LVI IGD L+N + S +HR VVN ERR +
Sbjct: 202 GAEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGV 260
Query: 124 AFFVTP-----KADKVVRPPQDLICREGTRLYPD 152
+ TP +D ++ Q+ + E YP+
Sbjct: 261 PRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPE 294
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 1 MWKLSGILFELLAVCLGVDRKHYKKFF--EDGYSIMRLNFYP---PCNNSALTLGTSP-- 53
++ LS L + A+ LG + + + F +D + + L YP P +A+
Sbjct: 149 VFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTK 208
Query: 54 -----HYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSC 108
H D S IT+L Q V+ L+V + +Q + +I G L+N YK+
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAP 268
Query: 109 LHRAV-VNGERERRSLAFFVTPKADKVVRP 137
+HR VN ER+ SL FFV D V+ P
Sbjct: 269 IHRVKWVNAERQ--SLPFFVNLGYDSVIDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 1 MWKLSGILFELLAVCLGVDRKHYKKFF--EDGYSIMRLNFYP---PCNNSALTLGTSP-- 53
++ LS L + A+ LG + + + F +D + + L YP P +A+
Sbjct: 149 VFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTK 208
Query: 54 -----HYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALSNGIYKSC 108
H D S IT+L Q V+ L+V + +Q + +I G L+N YK+
Sbjct: 209 LSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAP 268
Query: 109 LHRAV-VNGERERRSLAFFVTPKADKVVRP 137
+HR VN ER+ SL FFV D V+ P
Sbjct: 269 IHRVKWVNAERQ--SLPFFVNLGYDSVIDP 296
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 32 SIMRLNFYPPC--NNSALTLGTSPHYDPSSITILLQERVEGLEVFS-NNKWQTVRPRPDA 88
+++R+ YPP + + + H D + IT+L GL+V + + W V
Sbjct: 150 TLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGN 209
Query: 89 LVIIIGDTFMALSNGIYKSCLHRAVVNGE-----RERRSLAFFVTPKADKVV 135
++I IGD S+G + S HR V+N E + R SL F+ P V+
Sbjct: 210 IIINIGDXLQEASDGYFPSTSHR-VINPEGTDKTKSRISLPLFLHPHPSVVL 260
>pdb|3PHS|A Chain A, Crystal Structure Of Gbs52, The Minor Pilin In
Gram-Positive Pathogen Streptococcus Agalactiae
Length = 249
Score = 30.0 bits (66), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 96 TFMALSNGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRP 137
TF L +GIY AV GE+ R AF V DKV+ P
Sbjct: 91 TFNQLPDGIYYGL---AVKAGEKNRNVSAFLVDLSEDKVIYP 129
>pdb|1I82|A Chain A, Family 9 Carbohydrate-Binding Module From Thermotoga
Maritima Xylanase 10a With Cellobiose
pdb|1I8A|A Chain A, Family 9 Carbohydrate-Binding Module From Thermotoga
Maritima Xylanase 10a With Glucose
pdb|1I8U|A Chain A, Family 9 Carbohydrate-Binding Module From Thermotoga
Maritima Xylanase 10a
Length = 189
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 9 FELLAVCLGVDRKHYKK-FFEDGYSIMRLNFYPPCNNSALTLGTSPHYDPSSITILLQER 67
+E +V + +D ++K ++ED + R+N+ N G SP +++ ++
Sbjct: 72 WEQDSVEIFIDENNHKTGYYEDDDAQFRVNY---MNEQTFGTGGSPARFKTAVKLIEG-- 126
Query: 68 VEGLEVFSNNKWQTVRPRPDALV 90
G V + KW+T++P P+ ++
Sbjct: 127 --GYIVEAAIKWKTIKPTPNTVI 147
>pdb|3DTV|B Chain B, Crystal Structure Of Arylmalonate Decarboxylase
pdb|3DTV|C Chain C, Crystal Structure Of Arylmalonate Decarboxylase
Length = 240
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|2VLB|A Chain A, Structure Of Unliganded Arylmalonate Decarboxylase
pdb|2VLB|B Chain B, Structure Of Unliganded Arylmalonate Decarboxylase
pdb|2VLB|C Chain C, Structure Of Unliganded Arylmalonate Decarboxylase
pdb|2VLB|D Chain D, Structure Of Unliganded Arylmalonate Decarboxylase
Length = 251
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 8 TPTIGMIVPPAAGLVPADGARLYPDLPF 35
>pdb|3DTV|A Chain A, Crystal Structure Of Arylmalonate Decarboxylase
Length = 240
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|3DG9|A Chain A, Crystal Structure Of Malonate Decarboxylase From
Bordatella Bronchiseptica
pdb|3IP8|A Chain A, Crystal Structure Of Arylmalonate Decarboxylase (Amdase)
From Bordatella Bronchiseptic In Complex With
Benzylphosphonate
Length = 248
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|3IXM|A Chain A, Structure Of The Gly74cys Mutant Of Arylmalonate
Decarboxylase In The Sulfate Ion Associated Form
Length = 240
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|3EIS|A Chain A, Crystal Structure Of Arylmalonate Decarboxylase
pdb|3EIS|B Chain B, Crystal Structure Of Arylmalonate Decarboxylase
pdb|3EIS|C Chain C, Crystal Structure Of Arylmalonate Decarboxylase
pdb|3EIS|D Chain D, Crystal Structure Of Arylmalonate Decarboxylase
Length = 240
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|3IXL|A Chain A, Crystal Structure Of The Gly74cys-Cys188ser Mutant Of
Arylmalonate Decarboxylase In The Liganded Form
Length = 240
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|3DTV|D Chain D, Crystal Structure Of Arylmalonate Decarboxylase
Length = 240
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 128 TPKADKVVRPPQDLICREGTRLYPDFTW 155
TP +V P L+ +G RLYPD +
Sbjct: 6 TPTIGMIVPPAAGLVPADGARLYPDLPF 33
>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9
Signalosome Subunit 7 (Csn7)
Length = 169
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 42 CNNSALTLGTSPHYDPSSITILLQERVEGLEVFSNNKWQTVRPRPDALVIIIGDTFMALS 101
CN + L PH P I L Q L V + + V P +V + L
Sbjct: 79 CNATRL-----PHLSPDQILKLKQ-----LTVLTLAESNKVLPYDTLMVELDVSNVRELE 128
Query: 102 NGIYKSCLHRAVVNGERERRSLAFFVTPKADKVVRPPQ 139
+ + C++ +V G+ ++ F V A + +RP Q
Sbjct: 129 DFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQ 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,096,333
Number of Sequences: 62578
Number of extensions: 237595
Number of successful extensions: 607
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 19
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)