BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037404
         (605 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  911 bits (2355), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/595 (71%), Positives = 496/595 (83%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           MS P RAPTW S RRL EEKLQ+LHKC + N  K++ AQIIK +L  D Y+APKLIS+ +
Sbjct: 7   MSLPTRAPTWVSTRRLFEEKLQDLHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFS 66

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
           LC QM LA+ VFN IQDP+VHLYNTLIRA VQNS + +AF  F DMQ+ G+F DNFTYPF
Sbjct: 67  LCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPF 126

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           LLKACNGK W   VQMIH  + K G+FGD+FVPNSLIDSYSKCG++GV+ A KLFM MGE
Sbjct: 127 LLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGE 186

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           +D+VSWNSMI GLVK G+L  AR+LFDEM ERDAVSWNTILDGY KAGEM+ AF LFEK+
Sbjct: 187 KDLVSWNSMIGGLVKAGDLGRARKLFDEMAERDAVSWNTILDGYVKAGEMSQAFNLFEKM 246

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P RN+VSWSTMV GY K GDMEMA++LFD+MP K LV WTIIISG+AEKG+AKEA  LY+
Sbjct: 247 PERNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYN 306

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           QME AGLKPDDGTLISILAACAESGLL LG KVHASI K R KC+ NV NALVDMYAKCG
Sbjct: 307 QMEAAGLKPDDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCG 366

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            +D A+S+FN M+ +DLVSWN ML GLAMHG GEKA+ LFS+M+ EGF PDK T + +LC
Sbjct: 367 RVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILC 426

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           ACTHAGF+D+G+ YF SMERD+GI+P +EHYGCMIDLLGR GRL+EA RLVQSMP+EPN 
Sbjct: 427 ACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPND 486

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           +IWGTLLGACR HNAV LAE+VLD LI L+ SDPGNY+MLSNIFAA GDWN VAN+RLQM
Sbjct: 487 VIWGTLLGACRVHNAVPLAEKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQM 546

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           K T  QKPSGASS+E+D+EVHEF+V D+ HP++++IYQ++  LG+DLK V +A +
Sbjct: 547 KSTGVQKPSGASSIELDDEVHEFTVFDKSHPETDKIYQILVKLGQDLKQVAYAPE 601


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/587 (70%), Positives = 492/587 (83%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           MS PIR PTW SKRRLLE+K+ +LH+C +LNQ KQ+ AQ++K +L R+ ++  KLI++ +
Sbjct: 1   MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
           LCRQM LA+ VFN IQDPDV LYNTLIRA V+NS    AF VF +MQ+ GV  DNFTYPF
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPF 120

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           LLKAC+GK W  +V+MIHA + K G+  DIFVPNSLIDSY KCG+ GV+ A+K+F  M E
Sbjct: 121 LLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAE 180

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           RD VSWNSMI GLVK GEL EARRLFDEMPERD VSWNTILDGY KAGEMN AFELFEK+
Sbjct: 181 RDTVSWNSMIGGLVKVGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKM 240

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P RN+VSWSTMV GYSK GDM+MA++LFD+MP K LVPWTI+ISGYAEKG+AK+A  LY+
Sbjct: 241 PARNVVSWSTMVLGYSKAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYN 300

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           QMEEAGLK DDGT+ISIL+ACA SGLLGLG +VHASI + RFKC+T V NAL+DMYAKCG
Sbjct: 301 QMEEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCG 360

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           SL+NA+S+F+GM +KD+VSWNA++ GLAMHG GEKAL LFSRMK EGF PDK TFVGVLC
Sbjct: 361 SLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLC 420

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           ACTHAGF+D+G+ YF++MERDYG+ P+VEHYGCM+DLLGR GRLKEA RLV SMP+EPNA
Sbjct: 421 ACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNA 480

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           IIWGTLLGACR H+A  LAEEV D L++ + SD GN +MLSNI+AA GDW+  AN+RL+M
Sbjct: 481 IIWGTLLGACRMHSATGLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRM 540

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           K T  QKPSG SS+EVD+EVHEF+V D+ HPKS++IY+ I+ LG+ +
Sbjct: 541 KSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSDRIYKTIDGLGQHI 587


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  833 bits (2153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/590 (65%), Positives = 473/590 (80%), Gaps = 1/590 (0%)

Query: 2   SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           S PIR P+WFS R+LLE+KL +LHKC NLNQ KQL AQI+K +L  D ++ PKLIS+ +L
Sbjct: 5   SVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSL 64

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           CRQM LA   FN +Q P+VHLYNT+IRA   NS  +QAF  F  MQ  G + DNFT+PFL
Sbjct: 65  CRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFL 124

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-E 180
           LK C G  W  +++ +HA I K G+  D+FVPNSLIDSYSKCG  G+S AKKLF+SMG  
Sbjct: 125 LKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGAR 184

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           RD+VSWNSMI+GL KGG   EAR++FDEMPE+D +SWNT+LDGY K G+M+ AF+LF+++
Sbjct: 185 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 244

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P RN+VSWSTMV GY K GDMEMA++LFD+MP K LV WTII+SG+AEKG+A+EA  L+D
Sbjct: 245 PERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFD 304

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           QME+A LK D+GT++SILAACAESGLLGLG K+HASI    FKC T + NALVDMYAKCG
Sbjct: 305 QMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCG 364

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            L+ A  VFN +  KD+VSWNAML GLAMHG G KAL LF RMK+EGF P+K T +GVLC
Sbjct: 365 RLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLC 424

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           ACTHAG ID G++YF +MERDY ++P+VEHYGCM+DLLGR GRL+EA+RL+++MP+ PNA
Sbjct: 425 ACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNA 484

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           IIWGTLLGACR HNAVELA EVLD L+ L+ +D GN++MLSNI+AA GDWN VAN RL+M
Sbjct: 485 IIWGTLLGACRMHNAVELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRM 544

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           +    +KPSGASS+EV+NEVHEF+V D+ HPKS+ IYQ+IN L  +LK V
Sbjct: 545 RSIGTKKPSGASSIEVNNEVHEFTVFDRSHPKSDNIYQVINGLRHELKQV 594


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/596 (63%), Positives = 472/596 (79%), Gaps = 4/596 (0%)

Query: 1   MSAPI--RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
           M  P+  R PTWFS++RLLEEKL +LHKC NL+   Q+ AQ++K +L +D ++APKLI++
Sbjct: 3   MQVPVGGRVPTWFSRQRLLEEKLCDLHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAA 62

Query: 59  LALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFT 117
            +LCR +  A+ VFN +  P+VHLYN++IRA   N+ +    F  F  MQ+ G+F DNFT
Sbjct: 63  FSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFT 122

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           YPFLLKAC G +   LV+MIHA + K G++GDIFVPNSLIDSYS+CG  G+  A  LF++
Sbjct: 123 YPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLA 182

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M ERD+V+WNSMI GLV+ GEL  A +LFDEMPERD VSWNT+LDGYAKAGEM+ AFELF
Sbjct: 183 MKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELF 242

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           E++P RNIVSWSTMV GYSK GDM+MA++LFDR PAK +V WT II+GYAEKG  +EA  
Sbjct: 243 ERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATE 302

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           LY +MEEAGL+PDDG LISILAACAESG+LGLG ++HAS+ ++RF+C T V NA +DMYA
Sbjct: 303 LYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYA 362

Query: 358 KCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           KCG LD A  VF+G M KKD+VSWN+M+ G AMHG GEKAL LFSRM  EGF PD YTFV
Sbjct: 363 KCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFV 422

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           G+LCACTHAG +++G +YFYSME+ YGI+PQVEHYGCM+DLLGR G LKEA  L++SMP+
Sbjct: 423 GLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPM 482

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           EPNAII GTLL ACR HN V+ A  V + L +++ +DPGNY++LSNI+A  GDW  VANV
Sbjct: 483 EPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANV 542

Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           RLQM  T  QKPSGASS+EV+ EVHEF+V DQ HPKS+ IY+MI+ L +DL+ VG+
Sbjct: 543 RLQMMNTGGQKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGY 598


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  813 bits (2099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/596 (64%), Positives = 475/596 (79%), Gaps = 4/596 (0%)

Query: 1   MSAPI--RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
           M  P+  R PTWFS+RRLLEEKL +LHKC NL+   Q+ AQ++K +L +D ++APKLI++
Sbjct: 3   MQVPVGGRVPTWFSRRRLLEEKLCDLHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAA 62

Query: 59  LALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN-AQAFRVFLDMQEKGVFTDNFT 117
            +LCR +  A+ VFN +  P+VHLYN++IRA   NS + +  F  F  MQ+ G+F DNFT
Sbjct: 63  FSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFT 122

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           YPFLLKAC+G +   LV+MIHA + K G++GDIFVPNSLIDSYS+CG  G+  A  LF++
Sbjct: 123 YPFLLKACSGPSSLPLVRMIHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLA 182

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M ERD+V+WNSMI GLV+ GEL  A +LFDEMP+RD VSWNT+LDGYAKAGEM+ AFELF
Sbjct: 183 MEERDVVTWNSMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELF 242

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           E++P RNIVSWSTMV GYSK GDM+MA++LFDR P K +V WT II+GYAEKG+A+EA  
Sbjct: 243 ERMPWRNIVSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATE 302

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           LY +MEEAG++PDDG L+SILAACAESG+LGLG ++HAS+ ++RF+C   V NA +DMYA
Sbjct: 303 LYGKMEEAGMRPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYA 362

Query: 358 KCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           KCG LD A  VF+G M KKD+VSWN+M+ G AMHG GEKAL LFS M  EGF PD YTFV
Sbjct: 363 KCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFV 422

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           G+LCACTHAG +++G +YFYSME+ YGI+PQVEHYGCM+DLLGR G LKEA  L++SMP+
Sbjct: 423 GLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPM 482

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           EPNAII GTLL ACR HN V+LA  V + L +L+ SDPGNY++LSNI+A  GDW  VANV
Sbjct: 483 EPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANV 542

Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           RLQMK T  +KPSGASS+EV+ EVHEF+V DQ HPKS+ IYQMI+ L +DL+ VG+
Sbjct: 543 RLQMKNTGGEKPSGASSIEVEEEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGY 598


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  790 bits (2040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/590 (62%), Positives = 464/590 (78%), Gaps = 2/590 (0%)

Query: 2   SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           S P+RAP+W S RR+ EE+LQ+L KC NLNQ KQL AQII+ +L  D +IAPKLIS+L+L
Sbjct: 4   SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHEDLHIAPKLISALSL 63

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           CRQ  LA++VFN +Q+P+VHL N+LIRA  QNS   QAF VF +MQ  G+F DNFTYPFL
Sbjct: 64  CRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           LKAC+G++W  +V+M+H  I K G   DI+VPN+LID YS+CG +GV  A KLF  M ER
Sbjct: 124 LKACSGQSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D VSWNSM+ GLVK GEL +ARRLFDEMP+RD +SWNT+LDGYA+  EM+ AFELFEK+P
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMP 243

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLY 299
            RN VSWSTMV GYSK GDMEMA+++FD+MP  AK +V WTIII+GYAEKG+ KEA RL 
Sbjct: 244 ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLV 303

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           DQM  +GLK D   +ISILAAC ESGLL LGM++H+ + +     N  V NAL+DMYAKC
Sbjct: 304 DQMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKC 363

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G+L  A  VFN + KKDLVSWN ML+GL +HG G++A+ LFSRM+ EG  PDK TF+ VL
Sbjct: 364 GNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVL 423

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
           C+C HAG ID+G+ YFYSME+ Y ++PQVEHYGC++DLLGR GRLKEA+++VQ+MP+EPN
Sbjct: 424 CSCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPN 483

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
            +IWG LLGACR HN V++A+EVLD L++L   DPGNY++LSNI+AA  DW  VA++R +
Sbjct: 484 VVIWGALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSK 543

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           MK    +KPSGASSVE+++ +HEF+V D+ HPKS+QIYQM+ +L +   P
Sbjct: 544 MKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIEPPDP 593


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/602 (61%), Positives = 467/602 (77%), Gaps = 2/602 (0%)

Query: 2   SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           S P+RAP+W S RR+ EE+LQ+L KC NLNQ KQL AQII+ +L +D +IAPKLIS+L+L
Sbjct: 4   SLPVRAPSWVSSRRIFEERLQDLPKCANLNQVKQLHAQIIRRNLHQDLHIAPKLISALSL 63

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           CRQ  LA++VFN +Q+P+VHL N+LIRA   NS   QAF VF +MQ  G+F DNFTYPFL
Sbjct: 64  CRQTNLALRVFNQVQEPNVHLCNSLIRAHALNSQPYQAFFVFSEMQRFGLFADNFTYPFL 123

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           LKAC+G +W  +V+M+H  I K G   DI+VPN+LID YS+CG +GV  A KLF  M ER
Sbjct: 124 LKACSGLSWLPVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSER 183

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D VSWNSM+ GLVK GEL +AR+LFDEMP+RD +SWNT+LDGYA+  EM+ AFELFEK+P
Sbjct: 184 DTVSWNSMLGGLVKAGELRDARKLFDEMPQRDLISWNTMLDGYARCREMSRAFELFEKMP 243

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLY 299
            RN VSWSTMV GYSK GDMEMA+++FD+MP  AK +V WTIII+GYAEKG+ KEA +L 
Sbjct: 244 ERNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLV 303

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           DQM  +GL+ D    ISILAACAESGLL LGM+ H+ I K     N +V NAL+DMYAKC
Sbjct: 304 DQMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKC 363

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           GSL  A  VFN M KKDLVSWN ML+GL +HG G++A+ LFSRM+ EG  PDK TF+ VL
Sbjct: 364 GSLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVL 423

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
           C+C HAG ID+G+ YFYSME+ Y ++P+VEHYGC++DLLGR GRLKEA+++VQ+MP+EPN
Sbjct: 424 CSCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPN 483

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
            +IWG LLGACR HN V++A+EVLD L++L  SDPGNYT+LSNI+AA  DW  VA++R +
Sbjct: 484 VVIWGALLGACRMHNEVDIAKEVLDNLVKLDPSDPGNYTLLSNIYAAAEDWEGVADIRSK 543

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
           MK    +KPSGASSVE+++ +HEF+V D+ HPKS+QIYQM+ +L +   P      LS  
Sbjct: 544 MKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIEPQDPDMEVLVLSPT 603

Query: 600 IG 601
            G
Sbjct: 604 TG 605


>gi|357502061|ref|XP_003621319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496334|gb|AES77537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 605

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/601 (60%), Positives = 452/601 (75%), Gaps = 7/601 (1%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           +++ IRA TWFS RR LEE + +LHKC N N  KQ+ AQ+IK  L +DPYIAPKLI+S +
Sbjct: 6   VASSIRAFTWFSLRRHLEENITDLHKCTNPNHIKQIHAQLIKCHLHQDPYIAPKLIASYS 65

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACV---QNSLNAQAFRVFLDMQEKGVFTDNFT 117
           L   +  A+ VFN + DP+VHLYN LIRA       S +  AF V L M   GV  DNFT
Sbjct: 66  LTNNLSSAVNVFNQVPDPNVHLYNYLIRAYSLSGNESNSLCAFGVLLKMHVDGVLADNFT 125

Query: 118 YPFLLKACNGKN-WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           YPFLLK CNG + W  LV+M+HA + K G++ DIFVPNSLID Y +CG   V +A K+F 
Sbjct: 126 YPFLLKGCNGSSSWLSLVKMVHAHVEKLGFYWDIFVPNSLIDCYCRCG--DVEMAMKVFS 183

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
            M ERD+VSWNSM+ GLVK G+L  A ++FDEMPERD VSWNT+LDG+ KAGEM+ AF+L
Sbjct: 184 GMEERDVVSWNSMVGGLVKNGDLDGALKVFDEMPERDRVSWNTMLDGFTKAGEMDKAFKL 243

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
           FE++  R+IVSWSTMV GYSK+GDM+MA++LFDR P K LV WT IISGYAEKG  KEA 
Sbjct: 244 FERMAERDIVSWSTMVCGYSKNGDMDMARMLFDRCPVKNLVLWTTIISGYAEKGQVKEAM 303

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
            L D+ME++GL+ DDG  ISILAACAESG+LGLG K+H S  + RF+C+T V N+ +DMY
Sbjct: 304 NLCDEMEKSGLRLDDGFFISILAACAESGMLGLGKKMHDSFLRSRFRCSTKVLNSFIDMY 363

Query: 357 AKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           AKCG +D+A  VFNGM T+KDLVSWN+M++G  +HG GEK++ LF+ M  EGF PD+YTF
Sbjct: 364 AKCGCVDDAFRVFNGMKTEKDLVSWNSMIHGFGIHGHGEKSIELFNTMVREGFKPDRYTF 423

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           +G+LCACTHAG +++G  YFYSM+R YGI+PQ+EHYGCM+DLLGR G LKEA  LV+SMP
Sbjct: 424 IGLLCACTHAGLVNEGRGYFYSMQRVYGIVPQIEHYGCMVDLLGRGGHLKEAFWLVRSMP 483

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
            EPNAII GTLLGACR HN V+LA  V   L +L  SDPGN+++LSNI+A +GDW  VA 
Sbjct: 484 FEPNAIILGTLLGACRMHNDVKLATSVSKYLFKLVPSDPGNFSLLSNIYAQSGDWINVAK 543

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VR QM     QKPSG SS+EV+ EVHEF+V D  HPKS  IY MI+ L  DL+ VG+  +
Sbjct: 544 VRKQMNDEGGQKPSGVSSIEVEEEVHEFTVRDWSHPKSGDIYNMIDRLVHDLRQVGYVPR 603

Query: 596 L 596
           L
Sbjct: 604 L 604


>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
 gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
          Length = 427

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/418 (74%), Positives = 358/418 (85%)

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           +LF  M ERD+VSWNSMI GL+K GELSEA +LFDEMP +DAVSWNTILDGY KAGEMN 
Sbjct: 2   RLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMKDAVSWNTILDGYVKAGEMNK 61

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           AF LFE +P RN+VSWSTMV GY K GDMEMA++LFDRMP K LV WTII+SGYA KG+A
Sbjct: 62  AFGLFESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLA 121

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           K+A R ++QMEEAGLKPDDGT+ISILA+CAESGLLGLG +VH SI + R+KC+ NV NAL
Sbjct: 122 KDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNAL 181

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VDMYAKCG +D A+SVFNGM+KKDLVSWN ML GLAMHG GEKAL LFS M+ EGF PDK
Sbjct: 182 VDMYAKCGQVDRALSVFNGMSKKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDK 241

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            T V VLCAC HAGF+D+G++YF +MERDYGI+P +EHYGCM+DLLGR GRLKEA RLVQ
Sbjct: 242 VTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQ 301

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           SMPVEPN +IWGTLLGACR HNAV LAEEVLDCL +L+ SDPGNY++LSNIFA+ GDW+ 
Sbjct: 302 SMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPSDPGNYSLLSNIFASAGDWSS 361

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           VANVRLQMK    QKPSGASS+EVD+EVHEF+V D+ HPKS++IYQMIN LG DLK V
Sbjct: 362 VANVRLQMKNFGIQKPSGASSIEVDDEVHEFTVFDKSHPKSDKIYQMINRLGLDLKRV 419



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 25/312 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K   +N+   LF  +     +R+      ++S       M +A  +F+ +   ++  +  
Sbjct: 55  KAGEMNKAFGLFESMP----ERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTI 110

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++       L   A R F  M+E G+  D+ T   +L +C       L + +H  I +  
Sbjct: 111 IVSGYAVKGLAKDAIRSFEQMEEAGLKPDDGTVISILASCAESGLLGLGKRVHTSIERIR 170

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           Y   + V N+L+D Y+KCG V  +L+  +F  M ++D+VSWN M+ GL   G   +A +L
Sbjct: 171 YKCSVNVSNALVDMYAKCGQVDRALS--VFNGMSKKDLVSWNCMLQGLAMHGHGEKALQL 228

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK-------IPHRNIVSWSTMVWG 254
           F  M +     D V+   +L     AG ++     F         +PH  I  +  MV  
Sbjct: 229 FSIMRQEGFRPDKVTLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPH--IEHYGCMVDL 286

Query: 255 YSKDGDMEMAKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAARLYDQMEEAGLKPD 310
             + G ++ A  L   MP +  +V W  ++     +   G+A+E      ++E +   P 
Sbjct: 287 LGRGGRLKEAYRLVQSMPVEPNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLEPS--DPG 344

Query: 311 DGTLISILAACA 322
           + +L+S + A A
Sbjct: 345 NYSLLSNIFASA 356



 Score = 45.1 bits (105), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 12/123 (9%)

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
           M +F  M ++D+VSWN+M+ GL   G+  +A  LF  M  +    D  ++  +L     A
Sbjct: 1   MRLFKVMDERDVVSWNSMIRGLLKVGELSEACKLFDEMPMK----DAVSWNTILDGYVKA 56

Query: 426 GFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           G ++K    F SM ER+      V  +  M+    ++G ++ A  L   MPV+ N + W 
Sbjct: 57  GEMNKAFGLFESMPERN------VVSWSTMVSGYCKAGDMEMARMLFDRMPVK-NLVSWT 109

Query: 485 TLL 487
            ++
Sbjct: 110 IIV 112


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 287/591 (48%), Positives = 409/591 (69%), Gaps = 13/591 (2%)

Query: 7   APTWF--SKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           AP W   S+RRL+E+ L +L H  ++L+  ++L AQ++K  L  DP  A KLISS AL R
Sbjct: 45  APRWGAPSQRRLVEQHLASLPHGLQHLHHVQELHAQLLKHGLHLDPLAASKLISSYALQR 104

Query: 64  QMGLAIKVFNDIQDPDVHLY--NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           ++  + ++F    +P    +  NTL+RA   N+L   A  +F  M ++    D+FTY FL
Sbjct: 105 RLPASRRIFASFPNPQATTFLPNTLLRAYALNALPHAAVSLFSAMPQR----DSFTYSFL 160

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           +KA +      L + +H+ + K G   D +V N+LID+YSK G  G   A K+F  M  R
Sbjct: 161 IKALSSSGLTPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNG--GFLDASKVFEEMPRR 217

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D VSWNS +A +V+ GE++ ARR+FDEMP++D VSWNT+LDGY KAG+M  AFELF+ +P
Sbjct: 218 DTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMP 277

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            RN+VSWST+V GY K GD+EMA+++FD+MP K LV WTI++S  A+ G+ +EA RL+ Q
Sbjct: 278 ERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGRLFTQ 337

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M+EA ++ D   ++SILAACAESG L LG ++H  +   +   +T+VCNA++DM+ KCG 
Sbjct: 338 MKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGC 397

Query: 362 LDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           ++ A  VF+  + +KD VSWN ++ G AMHG G+KAL  F++MK +GF PD  T + VL 
Sbjct: 398 VNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAVTMINVLS 457

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           ACTH GF+++G Q+F +MERDYGI+PQ+EHYGCMIDLLGR G ++EA+ L++SMP +PN 
Sbjct: 458 ACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWDPNE 517

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           +IWG+LL ACR H  VE AE  ++ L +L+ S+ GNY +LSNI+A  G W+ +A  R+QM
Sbjct: 518 VIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQM 577

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           K T +QK +G+S +E+D   HEF+V D+ H  S+QI +M++ L   +K VG
Sbjct: 578 KGTGSQKSAGSSWIELDEAFHEFTVGDRKHSDSDQISEMVDRLSSHVKDVG 628


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 288/590 (48%), Positives = 405/590 (68%), Gaps = 13/590 (2%)

Query: 7   APTWF--SKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           AP W   S+RRL+E+ L +L H    L+  ++L AQ++K  L  DP  A KL+SS AL R
Sbjct: 11  APRWAAPSQRRLVEQHLASLPHGLPRLHHLQELHAQLLKHGLHLDPVAASKLLSSYALHR 70

Query: 64  QMGLAIKVFNDIQDPDVHLY--NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           ++  +  VF    +P    +  NTL+RA   N+L  +A  VF  M  +    D+FTY FL
Sbjct: 71  RLPASRGVFASFPNPHATTFLPNTLLRAYALNALPREAVAVFSAMPHR----DSFTYSFL 126

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           +KA +      L + +H+ + K G   D +V N+LID+YSK G  G S A K+F  M  R
Sbjct: 127 IKALSSAGVAPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNG--GFSDASKVFEEMPRR 183

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D+VSWNS +A +V+ GE+  ARR+FDEM E+D VSWNT+LDGY KAG++  AF+LF+ +P
Sbjct: 184 DVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLFQCMP 243

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            RN+VSWST+V GY K GDMEMA+++FD+MP K LV WTI++S  A+ G+ +EA +L+ Q
Sbjct: 244 ERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGKLFTQ 303

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M+EA ++ D   ++SILAACAESG L LG ++H  +   +   +T+VCNAL+DM+ KCG 
Sbjct: 304 MKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGC 363

Query: 362 LDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           ++ A  VF+  + +KD VSWN ++ G AMHG G+KAL  F++MK +GF PD  T + VL 
Sbjct: 364 INRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDAVTMINVLS 423

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           ACTH GF+++G +YF +MERDYG++PQ+EHYGCMIDLLGR G +KEA+ L++SMP +PN 
Sbjct: 424 ACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWDPNE 483

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           +IWG+LL ACR H  VE AE  ++ L +L+ S+ GNY +LS+I+A  G W+ +A  R+QM
Sbjct: 484 VIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSSIYAEAGKWSDMAKARMQM 543

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           K T +QK SG+S +E+D   HEF+V D+ HP S+QI +M++ L    K V
Sbjct: 544 KGTGSQKSSGSSWIELDEAFHEFTVGDRKHPDSDQISEMVDRLSSHAKDV 593


>gi|242079743|ref|XP_002444640.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
 gi|241940990|gb|EES14135.1| hypothetical protein SORBIDRAFT_07g025280 [Sorghum bicolor]
          Length = 690

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 297/601 (49%), Positives = 404/601 (67%), Gaps = 20/601 (3%)

Query: 7   APTW---FSKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC 62
           AP W    S+RRL+EE L +L H    L   ++L AQ+++  L RDP  A KLI+S AL 
Sbjct: 90  APKWGGAPSQRRLVEEHLASLPHGLPRLRHVQELHAQVLRQGLHRDPRAASKLIASYALL 149

Query: 63  RQMGLAIKVFNDIQDPDVH-----LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT 117
           R++     VF+    P        L NTL+RA   NSL   A  VF+DM  +    D FT
Sbjct: 150 RRVPACRCVFSAAAAPPFAPSTALLANTLLRAYALNSLPHAALAVFVDMPLRQ--RDTFT 207

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y FL+KA         V+  H  ++K G   D FV N+LID+YSK    G+S AKK+F  
Sbjct: 208 YSFLIKALATAG-VTPVRAAHTHVFKLGSVEDTFVGNALIDAYSKND--GLSDAKKVFDE 264

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M  RD+VSWN+ +A +V+ GE+  AR +FDEMPE+D VSWNT+LDGYAKAGE   AFELF
Sbjct: 265 MTTRDVVSWNTAMAAMVRKGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEEAFELF 324

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           +++P RN+VSWST+V  Y K GDMEMA+++FD+MPAK LV WTI++S  A+KG+  EA R
Sbjct: 325 QRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVGEAGR 384

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+ +M+EA ++ D   ++SILAACAESG L LG ++H  + + +   +T VCNAL+DM+ 
Sbjct: 385 LFTEMKEAAIELDVVAVVSILAACAESGCLALGKRIHRHVRQRKLGRSTLVCNALMDMFC 444

Query: 358 KCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           KCG ++ A  +F+  + +KD VSWN ++ G AMHG GEKAL LF++MK +GF PD  T +
Sbjct: 445 KCGCVNRADYIFDTEIVEKDSVSWNIIIGGFAMHGHGEKALNLFTQMKQQGFHPDAVTLI 504

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            VL ACTH G +++G ++F +ME DYGI P++EHYGCM+DLLGR G +KEA+ +++SMP 
Sbjct: 505 NVLSACTHMGLVEEGRRFFANMETDYGIKPEIEHYGCMVDLLGRGGLIKEAVDMIKSMPW 564

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           EPN +IWG+LL ACR H  VE AE   + L  L+ S+ GNY +LSNI+A  G W+ +A  
Sbjct: 565 EPNEVIWGSLLSACRLHKNVEYAELAANELSNLQPSNAGNYAVLSNIYAEAGKWSDMAKA 624

Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK-----PVG 591
           R+QMK T +QK +G+S +E+D   HEF+V D+ HP+S+QI  MI+ L   +K     PVG
Sbjct: 625 RVQMKGTGSQKTAGSSWIELDEAFHEFTVGDRKHPESDQISDMIDRLSSHVKCVGCVPVG 684

Query: 592 H 592
           H
Sbjct: 685 H 685


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 288/590 (48%), Positives = 397/590 (67%), Gaps = 32/590 (5%)

Query: 8   PTWF--SKRRLLEEKLQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           PTW   S+RRL+E+ L +L +        ++L AQ++K  L  +P  A +L+S+ AL R 
Sbjct: 340 PTWGAPSQRRLVEQHLASLPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRL 399

Query: 65  MGLAIKVFNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
           +  + +VF+ I+DP  D  L NT++RA         A   F  M  +    D+FTY FL+
Sbjct: 400 LPSSRRVFDAIRDPHADAFLANTMLRAYALGGAPRDALAAFSAMPRR----DSFTYSFLI 455

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
           KA +       V+ +H+ + K G   D FV N+LID+YSK G  G S A+K+F  M ERD
Sbjct: 456 KALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNG--GFSDARKVFDEMPERD 512

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           +VSWN+ +A +V+ GEL+ AR+LFDEMPE+D VSWNTILDGY KAGE+  AFELF+++P 
Sbjct: 513 VVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPE 572

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           RN+VSWSTMV GY K GD+EMA+++FD+MP K LV WTI+                   M
Sbjct: 573 RNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIM-------------------M 613

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           +EA ++ D   ++SILAACAESG L LG ++H  + K     +T+VCNAL+DM+ KCG +
Sbjct: 614 KEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCV 673

Query: 363 DNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           + A  VF+  T +KD VSWN+++ G AMHG G+KAL LF++MK +GF PD  T + VL A
Sbjct: 674 NRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSA 733

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           CTH GF+D+G +YF +MERDYGI+PQ+EHYGCMIDLLGR G +KEA+ L++SMP EPN +
Sbjct: 734 CTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPNEV 793

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           IWG+LL ACR H  VE AE  ++ L +L+ S+ GNY +LSNI+A  G W+ +A  R+QMK
Sbjct: 794 IWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSDMAKARMQMK 853

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            T +QK +G+S VE++   HEF+V D+ H  S+QI +M++ L   +K VG
Sbjct: 854 GTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHVG 903


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/606 (48%), Positives = 405/606 (66%), Gaps = 27/606 (4%)

Query: 7   APTWF---SKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC 62
           AP W    S RRL+EE L +L H    L   ++L AQ++K  L RDP+ A KLI+S AL 
Sbjct: 12  APKWGGAPSHRRLVEEHLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALL 71

Query: 63  RQMGLAIKVFND-IQDPDVHLYNTLI-------RACVQNSLNAQAFRVFLD--MQEKGVF 112
           R++     VF+  +  P+    ++         RA   NSL   A  VFLD  ++++G  
Sbjct: 72  RRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRG-- 129

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
              FTY FL+KA         V+  HA + K G   D FV N+LID+YSK    G+S AK
Sbjct: 130 --TFTYSFLIKALAAAG-LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQ--GLSDAK 184

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           K+F  M  RD+VSWN+ +A +V+ GE+  AR +FDEMPE+D VSWNT+LDGYAKAGE   
Sbjct: 185 KVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEK 244

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           AFELF+++P RN+VSWST+V  Y K GDMEMA+++FD+MPAK LV WTI++S  A+KG+ 
Sbjct: 245 AFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLV 304

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           +EA RL+ +M +A ++ D   ++SILAACAESG L LG ++H  + + +   +T VCNAL
Sbjct: 305 EEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNAL 364

Query: 353 VDMYAKCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           +DM+ KCG ++ A  +F+  + +KDLVSWN ++ G AMHG GEKAL LF++MK +GF PD
Sbjct: 365 MDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 424

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             T + VL ACTH G +++G ++F +ME DYGI PQ+EHYGCM+DLLGR G +KEA+ ++
Sbjct: 425 AVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMI 484

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           + MP EPN +IWG+LL ACR H  VE AE  ++ L  L+ S  GNY +LSNI+A  G W+
Sbjct: 485 KRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWS 544

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK--- 588
            +A  R+QMK T +QK +G+S +E++   HEF+V D+ HP+S+QI  MI+ L   +K   
Sbjct: 545 DMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFVG 604

Query: 589 --PVGH 592
             PVGH
Sbjct: 605 CVPVGH 610


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 294/606 (48%), Positives = 405/606 (66%), Gaps = 27/606 (4%)

Query: 7   APTW---FSKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC 62
           AP W    S RRL+EE L +L H    L   ++L AQ++K  L RDP+ A KLI+S AL 
Sbjct: 84  APKWGGAPSHRRLVEEHLASLPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALL 143

Query: 63  RQMGLAIKVFND-IQDPDVHLYNTLI-------RACVQNSLNAQAFRVFLD--MQEKGVF 112
           R++     VF+  +  P+    ++         RA   NSL   A  VFLD  ++++G  
Sbjct: 144 RRVPACRCVFSAAVALPNSPFPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRG-- 201

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
              FTY FL+KA         V+  HA + K G   D FV N+LID+YSK    G+S AK
Sbjct: 202 --TFTYSFLIKALAAAG-LTPVRGAHAHVVKLGSAEDTFVGNALIDAYSKNQ--GLSDAK 256

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           K+F  M  RD+VSWN+ +A +V+ GE+  AR +FDEMPE+D VSWNT+LDGYAKAGE   
Sbjct: 257 KVFDEMTTRDVVSWNTAMAAMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYAKAGEAEK 316

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           AFELF+++P RN+VSWST+V  Y K GDMEMA+++FD+MPAK LV WTI++S  A+KG+ 
Sbjct: 317 AFELFQRMPGRNVVSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLV 376

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           +EA RL+ +M +A ++ D   ++SILAACAESG L LG ++H  + + +   +T VCNAL
Sbjct: 377 EEAGRLFTEMMDAAIELDVIAVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCNAL 436

Query: 353 VDMYAKCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           +DM+ KCG ++ A  +F+  + +KDLVSWN ++ G AMHG GEKAL LF++MK +GF PD
Sbjct: 437 MDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFHPD 496

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             T + VL ACTH G +++G ++F +ME DYGI PQ+EHYGCM+DLLGR G +KEA+ ++
Sbjct: 497 AVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVDMI 556

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           + MP EPN +IWG+LL ACR H  VE AE  ++ L  L+ S  GNY +LSNI+A  G W+
Sbjct: 557 KRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSSAGNYAVLSNIYAEAGKWS 616

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK--- 588
            +A  R+QMK T +QK +G+S +E++   HEF+V D+ HP+S+QI  MI+ L   +K   
Sbjct: 617 DMAKARVQMKGTGSQKTAGSSWIELNEAFHEFTVGDRKHPESDQISDMIDRLSSHVKFVG 676

Query: 589 --PVGH 592
             PVGH
Sbjct: 677 CVPVGH 682


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/479 (53%), Positives = 353/479 (73%), Gaps = 4/479 (0%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D+FTY FL+KA +       V+ +H+ + K G   D FV N+LID+YSK G  G S A+K
Sbjct: 5   DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNG--GFSDARK 61

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
           +F  M ERD+VSWN+ +A +V+ GEL+  R+LFDEMPE+D VSWNTILDGY KAGE+  A
Sbjct: 62  VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 121

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
           FELF+++P RN+VSWSTMV GY K GD+EMA+++FD+MP+K LV WTI++S  A+KG+  
Sbjct: 122 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 181

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA +L+ QM+EA ++ D   ++SILAACAESG L LG ++H  + K     +T+VCNAL+
Sbjct: 182 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 241

Query: 354 DMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           DM+ KCG ++ A  VF+  T +KD VSWN+++ G AMHG G+KAL LF++MK +GF PD 
Sbjct: 242 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 301

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            T + VL ACTH GF+D+G ++F +MERDYGI+PQ+EHYGCMIDLLGR G +KEA+ L++
Sbjct: 302 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 361

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           SMP EPN +IWG+LL ACR H  VE AE  ++ L +L+ S+ GNY +LSNI+A  G W+ 
Sbjct: 362 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 421

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +A  R+QMK T +QK +G+S VE++   HEF+V D+ H  S+QI +M++ L   +K VG
Sbjct: 422 MAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHVG 480



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 173/406 (42%), Gaps = 83/406 (20%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
            + + + ++KL    D ++   LI + +       A KVF+++ + DV  +NT + A V+
Sbjct: 24  VRAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVR 83

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
               A   ++F +M EK                                       D   
Sbjct: 84  EGELAGVRKLFDEMPEK---------------------------------------DTVS 104

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
            N+++D Y+K G   V  A +LF  M ER++VSW++M++G  K G+L  AR +FD+MP +
Sbjct: 105 WNTILDGYTKAG--EVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSK 162

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIP------------------------------H 242
           + V+W  ++   A+ G ++ A +LF ++                               H
Sbjct: 163 NLVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIH 222

Query: 243 RNI----VSWSTMVWG-----YSKDGDMEMAKLLFD-RMPAKTLVPWTIIISGYAEKGMA 292
           R +    +  ST V       + K G +  A  +FD     K  V W  II G+A  G  
Sbjct: 223 RYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHG 282

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNA 351
            +A  L+ QM++ G  PD  T+I++L+AC   G +  G +  +++ + Y           
Sbjct: 283 DKALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGC 342

Query: 352 LVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA 396
           ++D+  + G +  A+ +   M  + + V W ++L    +H   E A
Sbjct: 343 MIDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYA 388


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/479 (53%), Positives = 353/479 (73%), Gaps = 4/479 (0%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D+FTY FL+KA +       V+ +H+ + K G   D FV N+LID+YSK G  G S A+K
Sbjct: 435 DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNG--GFSDARK 491

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
           +F  M ERD+VSWN+ +A +V+ GEL+  R+LFDEMPE+D VSWNTILDGY KAGE+  A
Sbjct: 492 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 551

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
           FELF+++P RN+VSWSTMV GY K GD+EMA+++FD+MP+K LV WTI++S  A+KG+  
Sbjct: 552 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 611

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA +L+ QM+EA ++ D   ++SILAACAESG L LG ++H  + K     +T+VCNAL+
Sbjct: 612 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 671

Query: 354 DMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           DM+ KCG ++ A  VF+  T +KD VSWN+++ G AMHG G+KAL LF++MK +GF PD 
Sbjct: 672 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 731

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            T + VL ACTH GF+D+G ++F +MERDYGI+PQ+EHYGCMIDLLGR G +KEA+ L++
Sbjct: 732 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 791

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           SMP EPN +IWG+LL ACR H  VE AE  ++ L +L+ S+ GNY +LSNI+A  G W+ 
Sbjct: 792 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 851

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +A  R+QMK T +QK +G+S VE++   HEF+V D+ H  S+QI +M++ L   +K VG
Sbjct: 852 MAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHVG 910



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 171/399 (42%), Gaps = 83/399 (20%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + + ++KL    D ++   LI + +       A KVF+++ + DV  +NT + A V+ 
Sbjct: 455 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE 514

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
              A   ++F +M EK                                       D    
Sbjct: 515 GELAGVRKLFDEMPEK---------------------------------------DTVSW 535

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+++D Y+K G V  +   +LF  M ER++VSW++M++G  K G+L  AR +FD+MP ++
Sbjct: 536 NTILDGYTKAGEVEAAF--ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKN 593

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIP------------------------------HR 243
            V+W  ++   A+ G ++ A +LF ++                               HR
Sbjct: 594 LVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHR 653

Query: 244 NI----VSWSTMVWG-----YSKDGDMEMAKLLFD-RMPAKTLVPWTIIISGYAEKGMAK 293
            +    +  ST V       + K G +  A  +FD     K  V W  II G+A  G   
Sbjct: 654 YVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGD 713

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNAL 352
           +A  L+ QM++ G  PD  T+I++L+AC   G +  G +  +++ + Y           +
Sbjct: 714 KALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCM 773

Query: 353 VDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMH 390
           +D+  + G +  A+ +   M  + + V W ++L    +H
Sbjct: 774 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLH 812


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 258/479 (53%), Positives = 353/479 (73%), Gaps = 4/479 (0%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D+FTY FL+KA +       V+ +H+ + K G   D FV N+LID+YSK G  G S A+K
Sbjct: 128 DSFTYSFLIKALSAAG-VAPVRAVHSHVVKLGSVEDTFVGNALIDAYSKNG--GFSDARK 184

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
           +F  M ERD+VSWN+ +A +V+ GEL+  R+LFDEMPE+D VSWNTILDGY KAGE+  A
Sbjct: 185 VFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAA 244

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
           FELF+++P RN+VSWSTMV GY K GD+EMA+++FD+MP+K LV WTI++S  A+KG+  
Sbjct: 245 FELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVD 304

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA +L+ QM+EA ++ D   ++SILAACAESG L LG ++H  + K     +T+VCNAL+
Sbjct: 305 EAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 364

Query: 354 DMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           DM+ KCG ++ A  VF+  T +KD VSWN+++ G AMHG G+KAL LF++MK +GF PD 
Sbjct: 365 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 424

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            T + VL ACTH GF+D+G ++F +MERDYGI+PQ+EHYGCMIDLLGR G +KEA+ L++
Sbjct: 425 VTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 484

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           SMP EPN +IWG+LL ACR H  VE AE  ++ L +L+ S+ GNY +LSNI+A  G W+ 
Sbjct: 485 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSNAGNYAVLSNIYAEAGQWSD 544

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +A  R+QMK T +QK +G+S VE++   HEF+V D+ H  S+QI +M++ L   +K VG
Sbjct: 545 MAKARMQMKGTGSQKTAGSSWVELNETFHEFTVGDRKHQDSDQISEMVDRLSSHVKHVG 603



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 173/405 (42%), Gaps = 83/405 (20%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + + ++KL    D ++   LI + +       A KVF+++ + DV  +NT + A V+ 
Sbjct: 148 RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVRE 207

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
              A   ++F +M EK                                       D    
Sbjct: 208 GELAGVRKLFDEMPEK---------------------------------------DTVSW 228

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+++D Y+K G V  +   +LF  M ER++VSW++M++G  K G+L  AR +FD+MP ++
Sbjct: 229 NTILDGYTKAGEVEAAF--ELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKN 286

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIP------------------------------HR 243
            V+W  ++   A+ G ++ A +LF ++                               HR
Sbjct: 287 LVTWTIMVSACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHR 346

Query: 244 NI----VSWSTMVWG-----YSKDGDMEMAKLLFD-RMPAKTLVPWTIIISGYAEKGMAK 293
            +    +  ST V       + K G +  A  +FD     K  V W  II G+A  G   
Sbjct: 347 YVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGD 406

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNAL 352
           +A  L+ QM++ G  PD  T+I++L+AC   G +  G +  +++ + Y           +
Sbjct: 407 KALELFAQMKQQGFNPDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCM 466

Query: 353 VDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA 396
           +D+  + G +  A+ +   M  + + V W ++L    +H   E A
Sbjct: 467 IDLLGRGGLIKEAVDLIKSMPWEPNEVIWGSLLSACRLHKNVEYA 511


>gi|449480383|ref|XP_004155878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 561

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 246/427 (57%), Positives = 313/427 (73%), Gaps = 9/427 (2%)

Query: 2   SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           S PIR P+WFS R+LLE+KL +LHKC NLNQ KQL AQI+K +L  D ++ PKLIS+ +L
Sbjct: 31  SVPIRTPSWFSTRKLLEQKLSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSL 90

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           CRQM LA   FN +Q P+VHLYNT+IRA   NS  +QAF  F  MQ  G + DNFT+PFL
Sbjct: 91  CRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFL 150

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-E 180
           LK C G  W  +++ +HA I K G+  D+FVPNSLIDSYSKCG  G+S AKKLF+SMG  
Sbjct: 151 LKVCTGNVWLPVIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGAR 210

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           RD+VSWNSMI+GL KGG   EAR++FDEMPE+D +SWNT+LDGY K G+M+ AF+LF+++
Sbjct: 211 RDVVSWNSMISGLAKGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEM 270

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P RN+VSWSTMV GY K GDMEMA++LFD+MP K LV WTII+SG+AEKG+A+EA  L+D
Sbjct: 271 PERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFD 330

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           QME+A LK D+GT++SILAACAESGLLGLG K+HASI    FKC T + NALVDMYAKCG
Sbjct: 331 QMEKACLKLDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCG 390

Query: 361 SLDNAMSVFNGMTKK-----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
            +D+ +  F+ M +      ++  +  M+  L   G+ E+A+ L   M      P+   +
Sbjct: 391 LIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMP---MAPNAIIW 447

Query: 416 VGVLCAC 422
             +L AC
Sbjct: 448 GTLLGAC 454



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 3/175 (1%)

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++HA I K     +  V   L+  ++ C  +  A + FN +   ++  +N M+   + + 
Sbjct: 64  QLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNS 123

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           Q  +A   F  M+ +G   D +TF  +L  CT   ++   ++  ++    +G +  V   
Sbjct: 124 QPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPV-IESVHAQIEKFGFMSDVFVP 182

Query: 452 GCMIDLLGRSGR--LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
             +ID   + G   +  A +L  SM    + + W +++    K    E A +V D
Sbjct: 183 NSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFD 237


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 252/586 (43%), Positives = 367/586 (62%), Gaps = 4/586 (0%)

Query: 15  RLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           RLLEE+  +L   CK   Q  Q+ AQII    Q + YI PKL++  A  ++M  A ++F+
Sbjct: 35  RLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFD 94

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
            I DP++ L+N++ R   Q+    +   +F  M+   +  + FT+P +LK+C   N    
Sbjct: 95  QIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIE 154

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +H  + KCG+ G+ FV  +LID YS  G VG   A K+F  M ER++V+W SMI G 
Sbjct: 155 GEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGD--AYKIFCEMFERNVVAWTSMINGY 212

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
           +   +L  ARRLFD  PERD V WN ++ GY + G+M  A +LF ++P+R+++ W+T++ 
Sbjct: 213 ILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLK 272

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDG 312
           GY+ +G++E  + LF+ MP + +  W  +I GYA  G+  E    + +M  E+ + P+D 
Sbjct: 273 GYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 332

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           TL+++L+ACA  G L LG  VH        K N  V NAL+DMYAKCG ++NA+SVF GM
Sbjct: 333 TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRGM 392

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             KDL+SWN ++ GLAMH +G  AL LF +MK+ G  PD  TF+G+LCACTH G ++ G 
Sbjct: 393 DTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGF 452

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
            YF SM  DY I+PQ+EHYGCM+D+L R+GRL++A+  V+ MPVE + +IW  LLGACR 
Sbjct: 453 AYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRI 512

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           +  VELAE  L  LI L+  +P NY MLSNI+   G W  VA +++ M+ T  +K  G S
Sbjct: 513 YKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCS 572

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            +EV++ V EF   D+ HP+ E+IY ++  L K L+  G+   L+ 
Sbjct: 573 LIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDLTG 618


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 252/596 (42%), Positives = 368/596 (61%), Gaps = 5/596 (0%)

Query: 6   RAPTWFSKRRLLEEKL--QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           R+PT     RL   +   +N+  CK   Q  Q+ AQII    Q + YI PKL++  A  +
Sbjct: 88  RSPTGGGHLRLTALRCLRENMRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLK 147

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           +M  A ++F+ I DP++ L+N++ R   Q+    +   +F  M+   +  + FT+P +LK
Sbjct: 148 RMTYARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLK 207

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           +C   N     + +H  + KCG+ G+ FV  +LID YS  G VG   A K+F  M ER++
Sbjct: 208 SCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGD--AYKIFCEMFERNV 265

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           V+W SMI G +   +L  ARRLFD  PERD V WN ++ GY + G+M  A +LF ++P+R
Sbjct: 266 VAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNR 325

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM- 302
           +++ W+T++ GY+ +G++E  + LF+ MP + +  W  +I GYA  G+  E    + +M 
Sbjct: 326 DVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRML 385

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
            E+ + P+D TL+++L+ACA  G L LG  VH        K N  V NAL+DMYAKCG +
Sbjct: 386 SESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGII 445

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           +NA+SVF GM  KDL+SWN ++ GLAMH +G  AL LF +MK+ G  PD  TF+G+LCAC
Sbjct: 446 ENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCAC 505

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           TH G ++ G  YF SM  DY I+PQ+EHYGCM+D+L R+GRL++A   V+ MPVE + +I
Sbjct: 506 THMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVI 565

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           W  LLGACR +  VELAE  L  LI L+  +P NY MLSNI+   G W  VA +++ M+ 
Sbjct: 566 WAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRD 625

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           T  +K  G S +EV++ V EF   D+ HP+ E+IY ++  L K L+  G+   L+ 
Sbjct: 626 TGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVPDLTG 681


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 254/493 (51%), Positives = 332/493 (67%), Gaps = 62/493 (12%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           V+ IHA + K     + FV   LI ++S C    ++LA  +F  + + D++ +N++I   
Sbjct: 33  VKQIHAQVLKANLHRESFVGQKLIAAFSLCR--QMTLAVNVFNQIQDPDVLLYNTLIRAH 90

Query: 194 VKGGELSEARRLFDEMPER---------------------------------------DA 214
           V+  E   A  +F EM +                                        D 
Sbjct: 91  VRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDI 150

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
              N+++D Y K GE+  A  LF+++P R+ VSW+T++ GY K G+M  A  LF++MPA+
Sbjct: 151 FVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPAR 210

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
            +V W+ +                     EAGLK DDGT+ISIL+ACA SGLLGLG +VH
Sbjct: 211 NVVSWSTM---------------------EAGLKFDDGTVISILSACAVSGLLGLGKRVH 249

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
           ASI + RFKC+T V NAL+DMYAKCGSL+NA+S+F+GM +KD+VSWNA++ GLAMHG GE
Sbjct: 250 ASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGE 309

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           KAL LFSRMK EGF PDK TFVGVLCACTHAGF+D+G+ YF++MERDYG+ P+VEHYGCM
Sbjct: 310 KALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCM 369

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +DLLGR GRLKEA RLV SMP+EPNAIIWGTLLGACR H+A  LAEEV D L++ + SD 
Sbjct: 370 VDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSDS 429

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           GN +MLSNI+AA GDW+  AN+RL+MK T  QKPSG SS+EVD+EVHEF+V D+ HPKS+
Sbjct: 430 GNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEVDDEVHEFTVFDRSHPKSD 489

Query: 575 QIYQMINTLGKDL 587
           +IY+ I+ LG+ +
Sbjct: 490 RIYKTIDGLGQHI 502



 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/424 (43%), Positives = 248/424 (58%), Gaps = 24/424 (5%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           MS PIR PTW SKRRLLE+K+ +LH+C +LNQ KQ+ AQ++K +L R+ ++  KLI++ +
Sbjct: 1   MSVPIRNPTWVSKRRLLEQKISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFS 60

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
           LCRQM LA+ VFN IQDPDV LYNTLIRA V+NS    AF VF +MQ+ GV  DNFTYPF
Sbjct: 61  LCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPF 120

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           LLKAC+GK W  +V+MIHA + K G+  DIFVPNSLIDSY K G +G   A++LF  M E
Sbjct: 121 LLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGE--ARRLFDEMPE 178

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT--------------ILDGYAK 226
           RD VSWN+++ G VK GE++ A  LF++MP R+ VSW+T              IL   A 
Sbjct: 179 RDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLKFDDGTVISILSACAV 238

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           +G + L   +   I  R     ST V       Y+K G +E A  +F  M  K +V W  
Sbjct: 239 SGLLGLGKRVHASI-ERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNA 297

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK-VHASINKY 340
           II G A  G  ++A +L+ +M+  G  PD  T + +L AC  +G +  G+   HA    Y
Sbjct: 298 IIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHAMERDY 357

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGL 399
                      +VD+  + G L  A  + + M  + + + W  +L    MH     A  +
Sbjct: 358 GVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEV 417

Query: 400 FSRM 403
           F R+
Sbjct: 418 FDRL 421


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  476 bits (1226), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/585 (41%), Positives = 357/585 (61%), Gaps = 4/585 (0%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           R +LEE   +L   CK +   +++ AQII    Q + Y+AP +++S    +QM  A  +F
Sbjct: 21  RWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLF 80

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           +   DP V L+N + R    N+   +   +F  M+   V  + FT+P +LK+C     F 
Sbjct: 81  DHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFV 140

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
             + IH  + K G  G+ FV  +LID YS    +G   A KLF+ M ER+IV+W SMI+G
Sbjct: 141 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGS--AYKLFVGMLERNIVAWTSMISG 198

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
            +    ++ ARRLFD  PERD V WN ++ GY + G+M  A +LF+ +P+R+ +SW+TM+
Sbjct: 199 YILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTML 258

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK-PDD 311
            GY+ +GD+E  + LF+ MP + +  W  +I GYA  G   E  R + +M   GL  P+D
Sbjct: 259 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 318

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL+++L+ACA  G L LG  VH       FK +  V NAL+DMY+KCG ++NAM VF  
Sbjct: 319 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 378

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  KDL++WN+M+ GLA HG G  AL LF +MK  G  PD  TF+GVLC+CTH G +++G
Sbjct: 379 MDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEG 438

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
             YF SM  +Y I PQ+EHYGCM+DL GR+G L  A+  V+ MP+E +A+IW  LLGACR
Sbjct: 439 TSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACR 498

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            +  ++LAE  L  LI L+  +P NY +LSNI+   G W  VA +++ M+ T ++K  G 
Sbjct: 499 IYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGC 558

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           S +EV++ V EF   D+ H +S++IY ++  L K L+  G+   +
Sbjct: 559 SLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYGPNM 603


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/585 (41%), Positives = 357/585 (61%), Gaps = 4/585 (0%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           R +LEE   +L   CK +   +++ AQII    Q + Y+AP +++S    +QM  A  +F
Sbjct: 63  RWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLF 122

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           +   DP V L+N + R    N+   +   +F  M+   V  + FT+P +LK+C     F 
Sbjct: 123 DHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFV 182

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
             + IH  + K G  G+ FV  +LID YS    +G   A KLF+ M ER+IV+W SMI+G
Sbjct: 183 EGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGS--AYKLFVGMLERNIVAWTSMISG 240

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
            +    ++ ARRLFD  PERD V WN ++ GY + G+M  A +LF+ +P+R+ +SW+TM+
Sbjct: 241 YILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTML 300

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK-PDD 311
            GY+ +GD+E  + LF+ MP + +  W  +I GYA  G   E  R + +M   GL  P+D
Sbjct: 301 NGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPND 360

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL+++L+ACA  G L LG  VH       FK +  V NAL+DMY+KCG ++NAM VF  
Sbjct: 361 ATLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFES 420

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  KDL++WN+M+ GLA HG G  AL LF +MK  G  PD  TF+GVLC+CTH G +++G
Sbjct: 421 MDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEG 480

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
             YF SM  +Y I PQ+EHYGCM+DL GR+G L  A+  V+ MP+E +A+IW  LLGACR
Sbjct: 481 TSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACR 540

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            +  ++LAE  L  LI L+  +P NY +LSNI+   G W  VA +++ M+ T ++K  G 
Sbjct: 541 IYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGC 600

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           S +EV++ V EF   D+ H +S++IY ++  L K L+  G+   +
Sbjct: 601 SLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYEPNM 645


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 355/586 (60%), Gaps = 4/586 (0%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           +R++EEK   L   CKN  +  Q+ AQI+   L+ + ++AP  I++ +  +++  A K+F
Sbjct: 8   QRIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLF 67

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + I  P+   +N + R  +QN  +     +F ++       + FT+P ++K+C       
Sbjct: 68  DKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEGVR 127

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
             + +H    K G+  + FV  SLID YSK G V    A K+F  M ER++V W ++I G
Sbjct: 128 EGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCV--EDAYKVFGEMHERNVVVWTAIING 185

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
            +  G++   RRLFD  PERD V W+ ++ GY ++  M  A ELF+K+P+R+ +SW+ M+
Sbjct: 186 YILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAML 245

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDD 311
            GY+ +G++EM + +FD MP + +  W  +I GY + G+  E    + +M  E  + P+D
Sbjct: 246 NGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPND 305

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL+++L+AC+  G L +G  VH       +K N  V N L+DMYAKCG ++NA+ VFN 
Sbjct: 306 FTLVAVLSACSRLGALDMGKWVHVYAESIGYKGNLFVGNVLIDMYAKCGVIENAVVVFNC 365

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           + +KD++SWN ++ GLA+HG    ALG+F RMK EG  PD  TFVG+L ACTH G +  G
Sbjct: 366 LDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVKDG 425

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
             YF SM   Y I+PQ+EHYGCM+DLLGR+G L +AL  ++ MP+EP+A+IW  LLGACR
Sbjct: 426 FLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGACR 485

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            +  VE+AE  L  LI L+ ++P N+ M+SNI+   G    VA +++ M+ T  +K  G 
Sbjct: 486 LYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLPGC 545

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           S +E ++ V EF   D+ H ++E IY+++  L   L+  G+   LS
Sbjct: 546 SVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNLS 591


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/626 (39%), Positives = 369/626 (58%), Gaps = 45/626 (7%)

Query: 15  RLLEE--KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ--MGLAIK 70
           R+L+E   L+ L KC+++   KQ+ A IIK  L    +   KLI   A+ R   +  AI 
Sbjct: 25  RVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAIS 84

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +FN I++P++ ++N++IR    +   A A   F+ M   GV  +++T+PFLLK+C     
Sbjct: 85  LFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLAS 144

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
            H  + IHA + K G+  D+F+  SLI+ Y++ G   ++ A+ +F     RD +S+ ++I
Sbjct: 145 AHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSG--EMNNAQLVFDQSNFRDAISFTALI 202

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV---- 246
           AG    G +  AR+LFDEMP +D VSWN ++ GYA+ G    A  LFE +   N+     
Sbjct: 203 AGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNES 262

Query: 247 ----------------------SW-------------STMVWGYSKDGDMEMAKLLFDRM 271
                                 SW             + ++  YSK GD++ A+ LFD M
Sbjct: 263 TIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM 322

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             + ++ W ++I GY      KEA  L+ +M  +G++P + T +SIL +CA  G + LG 
Sbjct: 323 LERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGK 382

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
            +HA INK     +T++  +L+D+YAKCG++  A  VF+GM  K L SWNAM+ GLAMHG
Sbjct: 383 WIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHG 442

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           Q +KA  LFS+M  +G  P++ TFVG+L AC HAG +D G Q+F SM +DY I P+ +HY
Sbjct: 443 QADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHY 502

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           GCMIDLLGR+G  +EA  L+Q+M V+P+  IWG+LLGACR H  VEL E V + L  L+ 
Sbjct: 503 GCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEP 562

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
            +PG Y +LSNI+A  G W+ VA +R ++     +K  G +++EVDN VHEF V D++HP
Sbjct: 563 DNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHP 622

Query: 572 KSEQIYQMINTLGKDLKPVGHAAKLS 597
           +SE IY+M+  + + LK  G  A  S
Sbjct: 623 QSEDIYRMLEEVDEQLKVFGFVADTS 648


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/530 (42%), Positives = 329/530 (62%), Gaps = 3/530 (0%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C   +  +Q+ A+II+  L +D +I  + ++             VFN +  P   L+
Sbjct: 32  LKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLW 91

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           NT I+   +N   +    +F+ M+      D FTYP L+KAC+           H    +
Sbjct: 92  NTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVR 151

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           CG  GD+FV  SLID Y KCG   +  A+K+F  MGER++VSW +MIAG     +L EAR
Sbjct: 152 CGVGGDVFVMTSLIDLYGKCG--EILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEAR 209

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           +LFDEMPE++AVSWN I+ GY K G++  A ++F+++PHRN+VS++TM+ GY+K GDM  
Sbjct: 210 KLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMAS 269

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +F+  P + +V W+ +ISGY + G   EA +++ +M    +KPD+  ++S+++AC++
Sbjct: 270 ARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQ 329

Query: 324 SGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G L L   V   + K     +  +V  AL+DM AKCGS+D A  +F  M K+DL+S+ +
Sbjct: 330 MGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCS 389

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ GL++HG G +A+ LFSRM +EG  PD   F  +L AC+ AG +D+G  YF SM+ DY
Sbjct: 390 MMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDY 449

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I+P  +HY CM+DLLGR+GRLKEA  L++SMPVEP+A  WG LLGAC+ H  +EL E V
Sbjct: 450 SIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVV 509

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
            D L  L+  + GNY +LSNI+AA   W  V+ +R +M++   +K  G S
Sbjct: 510 ADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 559


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/567 (40%), Positives = 353/567 (62%), Gaps = 4/567 (0%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL-ALCRQMGLAIKVFNDIQDPD 79
           L  L K K  +Q  Q+ AQ+I  +L  D + A +L+ S+ +    +  A  VF  I  P+
Sbjct: 15  LSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPN 74

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             + NT+++   ++S   +A R + +M+ KG+  DN+TYPF+LKAC          ++  
Sbjct: 75  SFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQG 134

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
              K G+ GD+FV N LI  Y +CG  G   A+ +F    E+D+VSWNSM+ G V  GE+
Sbjct: 135 EAVKRGFGGDVFVVNGLISMYCRCGETG--WARAVFDGFSEKDLVSWNSMLGGYVWCGEM 192

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKA-GEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
             A+ +FDEMPERD VSW+ ++DGY K  GE+N A   F+ +P R++VSW++M+ GY+K 
Sbjct: 193 ENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKV 252

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G+ME+A+ +FD+M  K ++ W+I+I GYA+   +KEA  L+ QM   G+KPD  +++  +
Sbjct: 253 GEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAV 312

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +AC++ G L  G  +H  + + R   +  V  ALVDMY KCGS D A  +FN M ++++V
Sbjct: 313 SACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVV 372

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWN M+ GL M+G G++AL  F++M+ E    D   F+GVL AC+HA  + +G+  F  M
Sbjct: 373 SWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQM 432

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           +  Y + P++EHYGC++DLLGR+G+L +   ++QSMP++PNA +WG+LL ACR H  V L
Sbjct: 433 KGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTL 492

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE V++ L  LK  D G Y ++SNI+A  G W  +  +R  MK+ + +K  G S +EVD 
Sbjct: 493 AEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRSVIEVDG 552

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGK 585
            V EF   ++ H   E+I  +I +L K
Sbjct: 553 NVEEFVSGEKSHILREEIELVIWSLAK 579


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/620 (38%), Positives = 361/620 (58%), Gaps = 45/620 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDP 78
           L  + +C    Q KQ+ AQ+++  L  DP+ A +LI++ AL     +  A +VF+ I  P
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           +++ +NTLIRA   +S   Q+  +FL M  +   F D FT+PFL+KA +        +  
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H ++ K     D+F+ NSLI  Y+KCG +G  L  ++F+++  RD+VSWNSMI   V+GG
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELG--LGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 198 ELSEARRLFDEMP----------------------------------ERDAVS-----WN 218
              EA  LF EM                                   ER+ +       N
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSN 276

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            +LD Y K G +  A  LF+K+P ++IVSW+TM+ GY+K G+ + A+ +FD MP + +  
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAA 336

Query: 279 WTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
           W  +IS Y + G  KEA  L+ +++     KPD+ TL+S L+ACA+ G + LG  +H  I
Sbjct: 337 WNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYI 396

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K   K N ++  +L+DMY KCG L  A+ VF+ + +KD+  W+AM+ GLAMHG G+ A+
Sbjct: 397 KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 456

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LFS+M+++   P+  TF  +LCAC+H G +++G  +F  ME  YG+LP V+HY CM+D+
Sbjct: 457 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDI 516

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G L+EA+ L++ MP+ P A +WG LLGAC  H  V LAE+    LI L+  + G Y
Sbjct: 517 LGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAY 576

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A  G W++V+ +R  M+    +K  G SS+EVD  VHEF V D  HP +++IY
Sbjct: 577 VLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIY 636

Query: 578 QMINTLGKDLKPVGHAAKLS 597
             ++ +   L+ +G+    S
Sbjct: 637 AKLDEIVARLETIGYVPNKS 656


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/530 (41%), Positives = 327/530 (61%), Gaps = 3/530 (0%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF+ I +P+  ++N + R   QN  +     +F  M+   V  + FT+P +LK+C  
Sbjct: 4   AHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKSCVK 63

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            N     + +H  + K G+  + FV  +LID Y+  G   +  A ++F  M ER++++W 
Sbjct: 64  INALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGG--AIHAAYRVFGEMIERNVIAWT 121

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
           +MI G +   +L  ARRLFD  PERD V WNT++ GY +A ++  A ELF+K+P+++++S
Sbjct: 122 AMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVMS 181

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG- 306
           W+T++ GY+ +GD+   + LF+ MP + +  W  +I GY   G   E    + +M   G 
Sbjct: 182 WNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGT 241

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           + P+D TL+++L+ACA  G L LG  VH     + +K N  V NAL+DMYAKCG ++ A+
Sbjct: 242 VVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETAL 301

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VF  M  KDL+SWN ++ GLA+HG G  AL LFS MK  G  PD  TF+G+LCACTH G
Sbjct: 302 DVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMG 361

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            ++ G  YF SM  DY I+P++EHYGC++DLLGR+G L  A+  ++ MP+E +A+IW  L
Sbjct: 362 LVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAAL 421

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGACR +  VELAE  L+ LI  +  +P NY MLSNI+   G W  VA +++ M+ T  +
Sbjct: 422 LGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGFK 481

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           K  G S +EV++ + EF   D+ HP+ EQIY  + TL K L+  G+   L
Sbjct: 482 KLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGYVPGL 531



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 175/439 (39%), Gaps = 84/439 (19%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++  K   L + +++   +IK   + +P++A  LI   A    +  A +VF ++ + +V
Sbjct: 58  LKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNV 117

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I   +       A R+F    E+                               
Sbjct: 118 IAWTAMINGYITCCDLVTARRLFDLAPER------------------------------- 146

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
                   DI + N++I  Y +     V  A++LF  M  +D++SWN+++ G    G++ 
Sbjct: 147 --------DIVLWNTMISGYIEAK--DVIRARELFDKMPNKDVMSWNTVLNGYASNGDVM 196

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK-------IPHR---------- 243
              RLF+EMPER+  SWN ++ GY + G  +     F++       +P+           
Sbjct: 197 ACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSAC 256

Query: 244 -----------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                                  N+   + ++  Y+K G +E A  +F  M  K L+ W 
Sbjct: 257 ARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKDLISWN 316

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NK 339
            II G A  G   +A  L+  M+ AG  PD  T I IL AC   GL+  G     S+ + 
Sbjct: 317 TIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDD 376

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA-L 397
           Y           +VD+  + G L +A+     M  + D V W A+L    ++   E A L
Sbjct: 377 YSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAALLGACRVYKNVELAEL 436

Query: 398 GLFSRMKDEGFGPDKYTFV 416
            L   ++ E   P  Y  +
Sbjct: 437 ALEKLIEFEPKNPANYVML 455



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 117/273 (42%), Gaps = 25/273 (9%)

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ME A  +FD++P      W  +  GY++    K+   L+ QM+   + P+  T   IL +
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C +   L  G +VH  + K  F+ N  V   L+DMYA  G++  A  VF  M ++++++W
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID-----KGVQYF 435
            AM+ G         A  LF         P++     VL     +G+I+     +  + F
Sbjct: 121 TAMINGYITCCDLVTARRLFD------LAPERDI---VLWNTMISGYIEAKDVIRARELF 171

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M         V  +  +++    +G +    RL + MP E N   W  L+G   ++  
Sbjct: 172 DKMPN-----KDVMSWNTVLNGYASNGDVMACERLFEEMP-ERNVFSWNALIGGYTRNGC 225

Query: 496 VELAEEVLDCLIRL--KGSDPGNYTMLSNIFAA 526
                EVL    R+   G+   N   L N+ +A
Sbjct: 226 F---SEVLSAFKRMLVDGTVVPNDATLVNVLSA 255


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 232/575 (40%), Positives = 354/575 (61%), Gaps = 4/575 (0%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL-ALCRQMGLAIKV 71
           K +L    L  L   K  +Q  Q+ AQ+I  +L  D + A +L+ S+ +    +  A  V
Sbjct: 7   KLQLKNPLLSLLQXSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELV 66

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           F  I  P+  + NT+++   ++S   +A R + +M++KG+  DN+TYPF+LKAC      
Sbjct: 67  FAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGL 126

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
               ++     K G+ GD+FV N LI  Y +CG  G   A+ +F    E+D+VSWNSM+ 
Sbjct: 127 LEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETG--WARAVFDGFSEKDLVSWNSMLG 184

Query: 192 GLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA-GEMNLAFELFEKIPHRNIVSWST 250
           G V  GE+  A+ +FDEMPERD VSW+ ++DGY K  GE+N A   F+ +P R++VSW++
Sbjct: 185 GYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNS 244

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M+ GY+K G+ME+A+ +FB+M  K ++ W+I+I GYA    +KEA  L+ QM   G+KPD
Sbjct: 245 MIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPD 304

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             +++  ++AC++ G L  G  +H  + + R   +  V  ALVDMY KCGS D A  +FN
Sbjct: 305 RVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFN 364

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            M ++++VSWN M+ GL M+G G++AL  F +M+ E    D   F+GVL AC+HA  + +
Sbjct: 365 SMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTE 424

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G+  F  M+  Y + P++EHYGC++DLLGR+G+L +   ++QSMP++PNA +WG+LL AC
Sbjct: 425 GLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLAC 484

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
           R H  V LAE V++ L  LK  D G Y ++SNI+A  G W  +  +R  MK+ + +K  G
Sbjct: 485 RIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIG 544

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
            S +EVD  V EF   ++ H   E+I  +I +L K
Sbjct: 545 RSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAK 579


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 344/574 (59%), Gaps = 37/574 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L     LNQ  Q+ A IIK  L  + ++  KL+  L  C        A  VF++I  PD 
Sbjct: 10  LQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDT 69

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            ++NT+IRA + +    ++  +F  M+ ++ +  D+++   +++AC         Q +H 
Sbjct: 70  FIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHT 129

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   D+FV  +LI+ Y+K G + +                               
Sbjct: 130 QVLKIGLGSDLFVETALIEMYAKFGDIEI------------------------------- 158

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
             AR + DEM   D V +N +L  Y + GE+NLA +LF+++P R++VSW+TM+ G++  G
Sbjct: 159 --ARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLG 216

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D+  AK LFDR   + L+ W+ +I+ YA+   + EA RL+ +M+ A + PD  T++S+L+
Sbjct: 217 DVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLS 276

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC + G LG+G  +H  I + R + +  +  +LVDMYAKCG +DN++ VFNGM  +D+ +
Sbjct: 277 ACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFA 336

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W+AM+ GLA HG GE AL  FS+M  E   P+  TF+GVL AC+H G +D+G  YF SM 
Sbjct: 337 WSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMS 396

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           + Y + P++EHYGC++D+LGR+GRL+EA+ L++SMP  P+AI+W  LLGACR +  VE+A
Sbjct: 397 KVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIA 456

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           EE    L+ L+    GNY +LSNI++   +W+KV NVR  MK    QK  G+SS+EVDN 
Sbjct: 457 EEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNA 516

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           VHEF   DQ HP+S++I +M++ +   LK  G+A
Sbjct: 517 VHEFVAGDQSHPESKKILRMLSEITARLKANGYA 550


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/595 (40%), Positives = 349/595 (58%), Gaps = 12/595 (2%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPY---IAPKLISSLALC 62
           R P   +      + L   + CK L   KQ+ AQII       P+       L +     
Sbjct: 85  RTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITH--HNSPFQLSALASLSALSPFP 142

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
             +  A  +F+ +Q+P   LYN+LIRA   +    +A  ++  M + G+  D+ TYPF++
Sbjct: 143 TFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVI 202

Query: 123 KACNGKN--WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           KACN  +  WF L  ++H  + K G+  D ++ +SLI  Y+    +G   AK+LF     
Sbjct: 203 KACNESSVTWFGL--LVHTHVVKSGFECDSYIVSSLIHLYANGKDLGA--AKQLFNLCSA 258

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           RD+VSWN+MI G VK  E+  AR +FD M  RD +SWNT+++GYA  G+++ A  LF+++
Sbjct: 259 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEM 318

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P RN+VSW++M+ G+ K G++E A  LF  MP + +V W  +++ YA+ G   EA  L+D
Sbjct: 319 PERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFD 378

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           QM   G+KP + T++S+L+ACA  G L  G+ +H  IN  R + N+ V  ALVDMYAKCG
Sbjct: 379 QMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 438

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            +  A  VFN M  KD+++WN ++ G+A+HG  ++A  LF  MK+ G  P+  TFV +L 
Sbjct: 439 KISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILS 498

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC+HAG +D+G +    M   YGI P+VEHYGC+IDLL R+G L+EA+ L+ +MP+EPN 
Sbjct: 499 ACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNP 558

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
              G LLG CR H   EL E V   LI L+    G Y +LSNI+AA   W+    VR  M
Sbjct: 559 SALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLM 618

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP-VGHAA 594
           K     K  G S +E+   VH F   D  HP+S +IY+ +N +   LK  +G++A
Sbjct: 619 KVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSA 673


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 250/634 (39%), Positives = 363/634 (57%), Gaps = 46/634 (7%)

Query: 8   PTWFSKRRLLEE--KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-- 63
           PT     +LL+    L  L  CK+    KQ+ +QIIK  L    +   KLI   A+    
Sbjct: 21  PTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
            +  A+ +F  I+ P+  ++NT+IR    +S    A   ++ M   GV  +++T+PFLLK
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           +C         + IH  + K G   D FV  SLI+ Y++ G +G   A+ +F     RD 
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGY--AELVFSKSSLRDA 198

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           VS+ ++I G    G L +ARRLF+E+P RDAVSWN ++ GYA++G    A   F+++   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 244 NIV-SWSTMV--------------------W------------------GYSKDGDMEMA 264
           N+  + STMV                    W                   YSK GD++ A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + LF+ +  K ++ W ++I GY+     KEA  L+ +M+++ ++P+D T +SIL ACA  
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 325 GLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           G L LG  +HA I+K +    NT++  +L+DMYAKCG+++ A  VF GM  K L SWNAM
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLAMHG    AL LF +M+DEGF PD  TFVGVL AC+HAG ++ G Q F SM  DY 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P+++HYGCMIDLLGR+G   EA  L+++M ++P+  IWG+LLGACR H  VEL E   
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAA 558

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L  L+  +PG Y +LSNI+A  G W+ VA +R ++     +K  G SS+EVD+ VHEF
Sbjct: 559 KHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEF 618

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            V D++H +S+ IY+M++ + + L+  GH    S
Sbjct: 619 LVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTS 652


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/613 (37%), Positives = 356/613 (58%), Gaps = 19/613 (3%)

Query: 4   PIRAPTWFSKRRLLEEKLQNL--HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA- 60
           P + PT  +   L  E  + L   +CK +    ++ A +IK  L   P +A  L+ S A 
Sbjct: 9   PAKTPTAKTSISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLESAAI 68

Query: 61  -LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYP 119
            L   M  A+ +F  I +PD   YN +IR         +A  +F +M E  V  D FT+P
Sbjct: 69  LLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDEFTFP 128

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            +LK C+        + IHALI KCG+    FV N+LI  Y+ CG V V  A+++F  M 
Sbjct: 129 CILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEV--ARRVFDEMS 186

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFE 235
           ER++ +WNSM AG  K G   E  +LF EM E D     V+  ++L    +  ++ L   
Sbjct: 187 ERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEW 246

Query: 236 LFEKIPHRNIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
           +   +  + +    T++      Y+K G ++ A+ LFD+M  + +V W+ +ISGY++   
Sbjct: 247 INRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASR 306

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
            +EA  L+ +M++A + P++ T++SIL++CA  G L  G  VH  I K R K    +  A
Sbjct: 307 CREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTA 366

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+D YAKCGS+++++ VF  M  K+++SW  ++ GLA +GQG+KAL  F  M ++   P+
Sbjct: 367 LMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPN 426

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             TF+GVL AC+HAG +D+G   F SM RD+GI P++EHYGCM+D+LGR+G ++EA + +
Sbjct: 427 DVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFI 486

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           ++MP++PNA+IW TLL +C+ H  VE+ EE L  LI L+ +  G+Y +LSNI+A+ G W 
Sbjct: 487 KNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWE 546

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
               VR +MK+   +K  G S +E+D  +HEF   D +H +SE+IY  I  + K +K  G
Sbjct: 547 DALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAG 606

Query: 592 HA-----AKLSAE 599
           +      A+L AE
Sbjct: 607 YVPNTAEARLDAE 619


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 226/615 (36%), Positives = 357/615 (58%), Gaps = 44/615 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
             +C +  Q KQ+ AQ+++ +   DPY A +L ++ A      L  A KVF+ I  P+++
Sbjct: 146 FQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLY 205

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHAL 140
            +N LIRA   +S   Q+  VF+ M     F  N FT+P L+KA   +  F + + +H +
Sbjct: 206 SWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGM 265

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  +  D+FV NSLI  Y+ CG + ++      +    +DIVSWNSM+ G V+GG   
Sbjct: 266 AIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPD 325

Query: 201 EARRLFDEMPER----DAVSW-----------------------------------NTIL 221
           +A  LF+ M       +AV+                                    N  +
Sbjct: 326 KALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNATI 385

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           D + K GE+ +A  LF+ +  R++VSW+T++ GY+K  +  +A+ +FD MP K +  W +
Sbjct: 386 DMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWNV 445

Query: 282 IISGYAEKGMAKEAARLYD--QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           +ISGY + G  KEA  ++   Q+ ++G +PD  TL+S L+ACA+ G + +G  +H  I K
Sbjct: 446 LISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYIKK 505

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
            R + N N+  +L+DMY+K G ++ A+ VF+ +  KD+  W+AM+ GLAMHG+GE A+ L
Sbjct: 506 ERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAIEL 565

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F  M++    P+  TF  +LCAC+H+G +D+G + F  MER YG++P+ +HY CM+D+LG
Sbjct: 566 FLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLG 625

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G L+EAL+ ++ MP+ P+A +WG LLGAC  H  +ELAE+    L+ ++  + G Y +
Sbjct: 626 RAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAYVL 685

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSN++A TGDW  V+ +R QM+ +  +K +G SS+E+D  VHEF V D  HP S  IY  
Sbjct: 686 LSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIYAK 745

Query: 580 INTLGKDLKPVGHAA 594
           ++ +   L+  G+ A
Sbjct: 746 LDEIMARLRSHGYVA 760


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/617 (37%), Positives = 351/617 (56%), Gaps = 45/617 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
           + KC N    KQL A +++  L  DP  A KL ++ AL     L  A KVF+ I  P+++
Sbjct: 37  IDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACALSSPSSLDYACKVFDQIPRPNLY 96

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            +NTLIRA   +    Q   VF+ M  E   F +++T+PF++KA    +     Q IH +
Sbjct: 97  TWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGM 156

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K  +  D+F+ NSLI  YS  G   +  A  +F  + E+DIVSWNSMI+G V+GG   
Sbjct: 157 VMKASFGSDLFISNSLIHFYSSLG--DLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPE 214

Query: 201 EARRLFDEMP----------------------------------ERDAVSWNTIL----- 221
           EA +LF  M                                   ER+ +  N IL     
Sbjct: 215 EALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDINLILSNAML 274

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           D Y K G +  A  LF+K+  ++IVSW+TM+ GY+K GD + A+ +FD MP + +  W  
Sbjct: 275 DMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNA 334

Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +IS Y + G  KEA  ++ +++     KP++ TL S LAACA+ G + LG  +H  I K 
Sbjct: 335 LISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ 394

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             K N ++  +L+DMY+KCG L+ A+ VF  + ++D+  W+AM+ GLAMHG G  A+ LF
Sbjct: 395 GIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHGHGRAAIDLF 454

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           S+M++    P+  TF  +LCAC+H+G +D+G  +F  M   YG++P  +HY CM+D+LGR
Sbjct: 455 SKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHYACMVDILGR 514

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +G L+EA+ L++ MP+ P+A +WG LLGACR +  VELAE     L+    ++ G Y +L
Sbjct: 515 AGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDSNNHGAYVLL 574

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SNI+A  G W+ V+ +R  MK +  +K  G SS+EV+  +HEF V D  HP S +IY  +
Sbjct: 575 SNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHPLSTEIYSKL 634

Query: 581 NTLGKDLKPVGHAAKLS 597
           + +   +K  G+ +  S
Sbjct: 635 DEIVARIKSTGYVSDES 651


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/620 (37%), Positives = 352/620 (56%), Gaps = 45/620 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL--CRQMGLAIKVFNDIQDP 78
           L+ + +C N  Q KQ+ A +++     DPY A KL+++ A+  C  +  A  VFN I  P
Sbjct: 76  LEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQP 135

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           +++ +NTLIR    +S   Q+F +FL M      F + FT+PFL KA +     HL  ++
Sbjct: 136 NLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVL 195

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H ++ K     D+F+ NSLI+ Y   G     LA ++F +M  +D+VSWN+MI     GG
Sbjct: 196 HGMVIKASLSSDLFILNSLINFYGSSG--APDLAHRVFTNMPGKDVVSWNAMINAFALGG 253

Query: 198 ELSEARRLFDEMPERDA-------VS---------------W-----------------N 218
              +A  LF EM  +D        VS               W                 N
Sbjct: 254 LPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNN 313

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            +LD Y K G +N A +LF K+  ++IVSW+TM+ G++K G+ + A  +FD MP K    
Sbjct: 314 AMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAA 373

Query: 279 WTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
           W  +IS Y + G  + A  L+ +M+     KPD+ TLI  L A A+ G +  G  +H  I
Sbjct: 374 WNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYI 433

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K+    N ++  +L+DMYAKCG+L+ AM VF+ + +KD+  W+AM+  LAM+GQG+ AL
Sbjct: 434 KKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAAL 493

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LFS M +    P+  TF  +LCAC HAG +++G Q F  ME  YGI+PQ++HY C++D+
Sbjct: 494 DLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDI 553

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
            GR+G L++A   ++ MP+ P A +WG LLGAC +H  VELAE     L+ L+  + G +
Sbjct: 554 FGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAF 613

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A  GDW KV+N+R  M+ +  +K    SS++V+  VHEF V D  HP S++IY
Sbjct: 614 VLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIY 673

Query: 578 QMINTLGKDLKPVGHAAKLS 597
             ++ + +  KP+G+   +S
Sbjct: 674 SKLDEISEKFKPIGYKPDMS 693



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 130/306 (42%), Gaps = 18/306 (5%)

Query: 11  FSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           F++  +L   + +++ KC  +N  K LF ++     ++D      ++   A       A 
Sbjct: 305 FTEHLILNNAMLDMYVKCGCINDAKDLFNKMS----EKDIVSWTTMLDGHAKLGNYDEAH 360

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGK 128
            +F+ +       +N LI A  QN     A  +F +MQ  K    D  T    L A    
Sbjct: 361 CIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQL 420

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
                   IH  I K     +  +  SL+D Y+KCG   ++ A ++F ++  +D+  W++
Sbjct: 421 GAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCG--NLNKAMEVFHAVERKDVYVWSA 478

Query: 189 MIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI-PHR 243
           MI  L   G+   A  LF  M E     +AV++  IL     AG +N   +LFE++ P  
Sbjct: 479 MIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLY 538

Query: 244 NIV----SWSTMVWGYSKDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARL 298
            IV     +  +V  + + G +E A    ++MP   T   W  ++   +  G  + A   
Sbjct: 539 GIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELA 598

Query: 299 YDQMEE 304
           Y  + E
Sbjct: 599 YQNLLE 604


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/616 (37%), Positives = 362/616 (58%), Gaps = 47/616 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDP 78
           L  + KC +  Q K++ A++++  L  DP+ A KL ++ AL     +  A  +F+ I  P
Sbjct: 29  LSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQP 88

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV-FTDNFTYPFLLKACNGKNWFHLVQMI 137
           +++ +NTLIRA   +S   Q+F +FLD+ +K     + FT+PF++KA +      +   +
Sbjct: 89  NLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAV 148

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H +  K  +  D+++ NSL+  Y  CG   +S+A++LF  +  +D+VSWNSMI+   +G 
Sbjct: 149 HGMAIKLSFGMDLYILNSLVRFYGACG--DLSMAERLFKGISCKDVVSWNSMISAFAQGN 206

Query: 198 ELSEARRLFDEMPERDAV-----------------------SW----------------- 217
              +A  LF +M ER+ V                        W                 
Sbjct: 207 CPEDALELFLKM-ERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLC 265

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N +LD Y K G ++ A +LF+++P R++ SW+ M+ GY+K GD + A+L+F+ MP K + 
Sbjct: 266 NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIA 325

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGL-KPDDGTLISILAACAESGLLGLGMKVHAS 336
            W ++IS Y + G  KEA  ++++++ + + KPD+ TL+S L+ACA+ G + LG  +H  
Sbjct: 326 AWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVY 385

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I +     N ++ ++LVDMYAKCGSL+ A+ VF  + ++D+  W+AM+ GL MHG+G+ A
Sbjct: 386 IKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAA 445

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           + LF  M++    P+  TF  VLCAC+HAG +D+G  +F+ ME  YG++P+++HY CM+D
Sbjct: 446 IDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVD 505

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +LGR+G L+EA+ L+  M   P+A +WG LLGAC  H  VEL E   D L++L+  + G 
Sbjct: 506 ILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGA 565

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
             +LSNI+A TG W KV+ +R  M+ T  +K  G SS+E +  VHEF V D  HP S  I
Sbjct: 566 IVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSNI 625

Query: 577 YQMINTLGKDLKPVGH 592
           Y  +  +   LK VG+
Sbjct: 626 YSKLEEIATKLKSVGY 641


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/594 (36%), Positives = 352/594 (59%), Gaps = 12/594 (2%)

Query: 15  RLLEEKLQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R++E+K  +L + C    +  Q+ AQI+   L+ + Y+ P  I++ A    +  A +VF+
Sbjct: 19  RVVEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFD 78

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
               P+   +N + R   Q + +     +F  M   G   + FT+P ++K+C   N    
Sbjct: 79  KTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKE 138

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +H ++ K G+  + FV  +LI  YS  G V V+ A K+F  M ++++ +W +++A  
Sbjct: 139 GEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAH 198

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
           V   ++  ARRLFD  P+RD V WN ++ GY + G+M  A ELF+++P R+++SW+T++ 
Sbjct: 199 VACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRDVMSWNTVLS 258

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM----------- 302
           GY+ +G++E    LF+ MP + +  W  +I GY   G+ KEA   + +M           
Sbjct: 259 GYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLVLVEGEGKEG 318

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
            +  + P+D T++++L AC+  G L +G  VH       +K N  V NAL+DMYAKCG +
Sbjct: 319 SDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVI 378

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           + A+ VF+G+  KD+++WN ++ GLAMHG    AL LF RMK  G  PD  TFVG+L AC
Sbjct: 379 EKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPDGVTFVGILSAC 438

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           TH G +  G+ +F SM  DY I+PQ+EHYGCM+DLLGR+G + +A+ +V+ MP+EP+A+I
Sbjct: 439 THMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPMEPDAVI 498

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           W  LLGACR +  VE+AE  L  LI L+ ++PGN+ M+SNI+   G    VA +++ M+ 
Sbjct: 499 WAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQDVARLKVAMRD 558

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           T  +K  G S +  ++ + EF   D+ HP+++ IY+ +  L   L+  G+   L
Sbjct: 559 TGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLTILLRSHGYVPNL 612


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 356/628 (56%), Gaps = 50/628 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ----MGLAIKVFNDIQ 76
           L  +  CK++ Q KQ+ +Q I   L  +P +  ++I+    C+     M  A  VF+ + 
Sbjct: 23  LSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIA--FCCKHELGDMEYARMVFDTMP 80

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
            P+  ++N +I+   +      A  ++ +M E+GV  D +TYPFLLK           + 
Sbjct: 81  GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE 140

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H  I K G+  ++FV N+LI  YS  G   VS+A+ +F    + D+V+WN MI+G  + 
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSG--EVSVARGVFDRSSKGDVVTWNVMISGYNRS 198

Query: 197 GELSEARRLFDEMP---------------------------------------ERDAVSW 217
            +  E+ +LFDEM                                        E   V  
Sbjct: 199 KQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLE 258

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N ++D YA  G+M+ A  +F+ +  R+++SW+ +V G++  G + +A+  FD+MP +  V
Sbjct: 259 NALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFV 318

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +I GY +    KE   L+ +M+ A +KPD+ T++SIL ACA  G L LG  + A I
Sbjct: 319 SWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYI 378

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
           +K   K ++ V NAL+DMY  CG+++ A+ +FN M  +D +SW A+++GLA++G GE+AL
Sbjct: 379 DKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEAL 438

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +FS+M      PD+ T +GVLCACTH+G +DKG ++F  M   +GI P V HYGCM+DL
Sbjct: 439 DMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDL 498

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G LKEA  ++++MPV+PN+I+WG+LLGACR H   E+AE     ++ L+  +   Y
Sbjct: 499 LGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVY 558

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +L NI+AA   W K+  VR  M     +K  G S +E++  VHEF   DQ+HP+S++IY
Sbjct: 559 VLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIY 618

Query: 578 QMINTLGKDLKPVGHAAKLSA---EIGE 602
             ++ +  DLK  G++   S    +IGE
Sbjct: 619 SKLDEMSVDLKFAGYSPDTSEVFLDIGE 646


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/627 (37%), Positives = 349/627 (55%), Gaps = 48/627 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  LH CK L   + + AQ+IK  L    Y   KL+    +      +  AI VF  IQ+
Sbjct: 37  LSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQE 96

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P++ ++NT+ R    +S    A ++++ M   G+  +++T+PFLLK+C     F   Q I
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQI 156

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K GY  D+FV  SLI  Y + G   +  A+K+F     RD+VS+ ++I G    G
Sbjct: 157 HGHVLKLGYDLDLFVHTSLISVYVQNG--RLEDARKVFDRSPHRDVVSYTALIKGYASRG 214

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMV---- 252
            +  A++LFDE+P +D VSWN ++ GYA+ G    A ELF+++   NI    STMV    
Sbjct: 215 YIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVS 274

Query: 253 ----------------WG------------------YSKDGDMEMAKLLFDRMPAKTLVP 278
                           W                   YSK G++E A  LF+ +  K ++ 
Sbjct: 275 ACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVIS 334

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I GY    + KEA  L+ +M  +G +P+D T++SIL ACA  G + +G  +H  I+
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYID 394

Query: 339 KYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           K R K  TN  +   +L+DMYAKCG ++ A  VFN +  K L SWNAM++G AMHG+ + 
Sbjct: 395 K-RLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A  +FSRM+  G  PD  TFVG+L AC+ +G +D G   F +M +DY I P++EHYGCMI
Sbjct: 454 AFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMI 513

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLG SG  KEA  ++ +M +EP+ +IW +LL AC+    VEL E     LI+++  +PG
Sbjct: 514 DLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPG 573

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
            Y +LSNI+A  G WN+VA +R  +     +K  G SS+E+D+ VHEF + D+ HP++ +
Sbjct: 574 CYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633

Query: 576 IYQMINTLGKDLKPVGHAAKLSAEIGE 602
           IY M+  +   L+  G     S  + E
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQE 660


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/530 (40%), Positives = 319/530 (60%), Gaps = 18/530 (3%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C   +  +Q+ A+II+  L +D ++  + ++             VFN +  P   L+
Sbjct: 32  LKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLW 91

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           NT I+   +N   +    +F+ M+      D FTYP L+KAC+           H    +
Sbjct: 92  NTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVR 151

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           CG  GD+FV  SLID Y KCG   +  A+K+F  MGER++VSW +MIAG     +L EAR
Sbjct: 152 CGVGGDVFVMTSLIDLYGKCG--EILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEAR 209

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           +LFDEMPE++AVSWN I+ GY K G++  A ++F+++PHRN+VS++TM+ GY+K GDM  
Sbjct: 210 KLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAKSGDMAS 269

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +F+  P + +V W+ +I               +    E  +KPD+  ++S+++AC++
Sbjct: 270 ARFVFEEAPERDVVAWSALI---------------FRVCAEWNVKPDEFIMVSLMSACSQ 314

Query: 324 SGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G L L   V   + K     +  +V  AL+DM AKCGS+D A  +F  M K+DL+S+ +
Sbjct: 315 MGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCS 374

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ GL++HG G +A+ LFSRM +EG  PD   F  +L AC+ AG +D+G  YF SM+ DY
Sbjct: 375 MMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDY 434

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I+P  +HY CM+DLLGR+GRLKEA  L++SMPVEP+A  WG LLGAC+ H  +EL E V
Sbjct: 435 SIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVV 494

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
            D L  L+  + GNY +LSNI+AA   W  V+ +R +M++   +K  G S
Sbjct: 495 ADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 544


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/531 (42%), Positives = 329/531 (61%), Gaps = 10/531 (1%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ I+ P++ L+NT+IR  V N     A   +  M+ +G   +NFT+PF+LKAC     
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             L   IH L+ K G+  D+FV  SL+  Y+KCG +    A K+F  + ++++VSW ++I
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYL--EDAHKVFDDIPDKNVVSWTAII 185

Query: 191 AGLVKGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---- 242
           +G +  G+  EA    RRL +     D+ +   +L    + G++N    + + I      
Sbjct: 186 SGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMV 245

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           RN+   +++V  Y+K G+ME A+ +FD MP K +V W  +I GYA  G+ KEA  L+ QM
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           +   +KPD  T++ +L+ACA  G L LG  V   +++  F  N  +  AL+D+YAKCGS+
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSM 365

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
             A  VF GM +KD V WNA++ GLAM+G  + + GLF +++  G  PD  TF+G+LC C
Sbjct: 366 SRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGC 425

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           THAG +D+G +YF SM R + + P +EHYGCM+DLLGR+G L EA +L+++MP+E NAI+
Sbjct: 426 THAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIV 485

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG LLGACR H   +LAE  L  LI L+  + GNY +LSNI++A   W++ A VRL M +
Sbjct: 486 WGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNE 545

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            R QKP G S +EVD  VHEF V D+ HP SE+IY  ++ L K +K  G+ 
Sbjct: 546 KRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYV 596


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/571 (40%), Positives = 336/571 (58%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   K + A +++L L  D Y+  K++           + ++ +  ++P++ L+NT+IR 
Sbjct: 23  LKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRG 82

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V N    ++  ++  M+++G+  D+FT+PF+LKAC       L   +H+L+ K G   D
Sbjct: 83  LVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEAD 142

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
            FV  SLI+ Y+KCG +  +   K+F  + +++  SW + I+G V  G+  EA    RRL
Sbjct: 143 AFVKISLINLYTKCGFIDNAF--KVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRL 200

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDM 261
            +     D+ S   +L    + G++     + E I      RN+   + +V  Y K G+M
Sbjct: 201 LEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNM 260

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A+ +FD M  K +V W+ +I GYA  G+ KEA  L+ +M   GLKPD   ++ +L +C
Sbjct: 261 ERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSC 320

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A  G L LG      IN   F  N+ +  AL+DMYAKCG +D A  VF GM KKD V WN
Sbjct: 321 ARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWN 380

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A + GLAM G  + ALGLF +M+  G  PD+ TFVG+LCACTHAG +++G +YF SME  
Sbjct: 381 AAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECV 440

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           + + P++EHYGCM+DLLGR+G L EA +L++SMP+E NAI+WG LLG CR H   +L E 
Sbjct: 441 FTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEV 500

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           VL  LI L+    GNY +LSNI+AA+  W + A +R  M +   +K  G S +EVD  VH
Sbjct: 501 VLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVH 560

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +F V D  HP SE+IY  +  L KDLK  G+
Sbjct: 561 QFLVGDTSHPLSEKIYAKLGELAKDLKAAGY 591



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 80/356 (22%), Positives = 150/356 (42%), Gaps = 61/356 (17%)

Query: 14  RRLLEEKL--------QNLHKCK---NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC 62
           RRLLE  L        + L  CK   +L   + +   I +  + R+ ++A  L+     C
Sbjct: 198 RRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKC 257

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
             M  A  VF+ + + ++  ++++I+    N L  +A  +F  M  +G+  D +    +L
Sbjct: 258 GNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVL 317

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            +C       L      LI    +  +  +  +LID Y+KCG   +  A ++F  M ++D
Sbjct: 318 CSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCG--RMDRAWEVFRGMRKKD 375

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEM------PERDAV--------------------- 215
            V WN+ I+GL   G + +A  LF +M      P+R+                       
Sbjct: 376 RVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFN 435

Query: 216 -------------SWNTILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDM 261
                         +  ++D   +AG ++ A +L + +P   N + W  ++ G     D 
Sbjct: 436 SMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDT 495

Query: 262 EMAKLLFDRMPAKTLVPW-----TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           ++ +++  ++ A  L PW      ++ + YA     +EAA++   M E G+K   G
Sbjct: 496 QLVEVVLKKLIA--LEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPG 549


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/615 (38%), Positives = 337/615 (54%), Gaps = 46/615 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ--MGLAIKVFNDIQDP 78
           L  L  CK L   KQ+ +QIIK  L    +   KLI   A+     +  A+ +F  I++P
Sbjct: 32  LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP 91

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           +  ++N +IR    +     A   ++ M   G   + +T+P + K+C      H  + +H
Sbjct: 92  NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           A + K G   + FV  SLI+ Y++ G   +  A+ +F     RD VS+ ++I G    G 
Sbjct: 152 AHVLKLGLEHNAFVHTSLINMYAQNG--ELVNARLVFDKSSMRDAVSFTALITGYASKGF 209

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV------------ 246
           L EAR LFDE+P RD VSWN ++ GYA++G +  A   FE++    +             
Sbjct: 210 LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSA 269

Query: 247 ---------------SW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                          SW             + ++  Y K GD+E A  LF+++  K +V 
Sbjct: 270 CAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS 329

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W ++I GY      KEA  L+ +M ++ + P+D T +SIL ACA  G L LG  VHA ++
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVD 389

Query: 339 K--YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           K     K    +  +L+DMYAKCG L  A  +F+ M  K L +WNAM+ G AMHG  + A
Sbjct: 390 KNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           LGLFSRM  EGF PD  TFVGVL AC HAG +  G +YF SM +DY + P++ HYGCMID
Sbjct: 450 LGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMID 509

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           L GR+G   EA  LV++M ++P+  IW +LLGACR H  +ELAE V   L  L+  +P  
Sbjct: 510 LFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSA 569

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y +LSNI+A  G W  VA +R ++   R +K  G SS+EVD+ VHEF V D++HP+S +I
Sbjct: 570 YVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEI 629

Query: 577 YQMINTLGKDLKPVG 591
           Y+M++ +   L+  G
Sbjct: 630 YKMLDEIDMRLEKAG 644


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 338/602 (56%), Gaps = 48/602 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-GL--AIKVFNDIQD 77
           L  LH CK L   + + AQ+IK  L    Y   KL+    L     GL  AI VF+ IQ+
Sbjct: 6   LSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQE 65

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P + ++NT+ R    +S    A ++++ M   G+  +++T+PFLLK+C     F   Q +
Sbjct: 66  PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G+  D+++  SLI  Y + G   +  A+K+      RD+VS+ ++I G    G
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNG--RLEDAQKVXDKSSHRDVVSYTALITGYASRG 183

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--------------- 242
            +  A ++FDE+P +D VSWN  + GYA+ G    A ELF+K+                 
Sbjct: 184 XIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLS 243

Query: 243 -----------RNIVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                      R + SW             + ++  YSK G++E A  LF  +  K ++ 
Sbjct: 244 ACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVIS 303

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I GY    + KEA  L+  M  +G KP+D T++SIL+ACA  G + +G  +H  I+
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYID 363

Query: 339 KYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           K R K  TN  +   +L+DMYAKCG ++ A  VF+ M  + L SWNAM++G AMHG+   
Sbjct: 364 K-RLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANA 422

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A  +FSRM+  G  PD  TFVG+L AC+H+G +D G   F SM RDY ++P++EHYGCMI
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMI 482

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DL G SG  KEA +++ +M +EP+ +IW +LL AC+ H  VEL E     LI+++  +PG
Sbjct: 483 DLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPG 542

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
           +Y +LSNI+A    WN+VA  R  +     +K  G SS+E+D+ VHEF + D+ HP++ +
Sbjct: 543 SYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 602

Query: 576 IY 577
           IY
Sbjct: 603 IY 604



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 106/245 (43%), Gaps = 16/245 (6%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF+ + +  L+ WN M  G A+      AL L+  M   G  P+ YTF  +L +
Sbjct: 53  LPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKS 112

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C  +    +G Q  +     +G    +  +  +I +  ++GRL++A + V       + +
Sbjct: 113 CAKSXAFKEG-QQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQK-VXDKSSHRDVV 170

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
            +  L+        +E A ++ D    +   D  ++    + +A TG++ +   +  +M 
Sbjct: 171 SYTALITGYASRGXIESAHKMFD---EIPVKDVVSWNAXISGYAETGNYKEALELFKKMM 227

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS--EQIYQMINT--LGKDLKPVGHAAKLS 597
           KT   +P  ++ V V       S C Q        Q++  IN    G +LK V     L 
Sbjct: 228 KTNV-RPDESTMVTV------LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLY 280

Query: 598 AEIGE 602
           ++ GE
Sbjct: 281 SKCGE 285


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/552 (39%), Positives = 325/552 (58%), Gaps = 45/552 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI VF  IQ+P+  ++NT++R    +S    A ++++ M   G+  +++T+PFLLK+C  
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   Q IH  + K GY  D++V  SLI  Y++ G   +  A K+F     RD+VS+ 
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNG--RLEDAHKVFDRSSHRDVVSYT 136

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----- 242
           ++I G    G +  A+ +FDE+P +D VSWN ++ GYA+ G    A ELF+++       
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 243 ---------------------RNIVSW-------------STMVWGYSKDGDMEMAKLLF 268
                                R + SW             + ++  YSK G +E A  LF
Sbjct: 197 DEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLF 256

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           + +  K +V W  +I GY    + KEA  L+ +M  +G  P+D T++SIL ACA  G + 
Sbjct: 257 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAID 316

Query: 329 LGMKVHASINKYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
           +G  +H  I+K + K  TN  +   +L+DMYAKCG ++ A  VFN M  K L SWNAM++
Sbjct: 317 IGRWIHVYIDK-KLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 375

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G AMHG+      LFSRM+  G  PD  TFVG+L AC+H+G +D G   F SM +DY I 
Sbjct: 376 GFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDIT 435

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P++EHYGCMIDLLG SG  KEA  ++++MP+EP+ +IW +LL ACR+H  +ELAE     
Sbjct: 436 PKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARN 495

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L++++  +PG+Y +LSNI+A  G+W++VA VR  +     +K  G SS+E+D+EVHEF V
Sbjct: 496 LMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIV 555

Query: 566 CDQLHPKSEQIY 577
            D+LHP++ +IY
Sbjct: 556 GDKLHPRNREIY 567



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 195/446 (43%), Gaps = 48/446 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN------- 73
           L++  K K   + +Q+   ++KL  + D Y+   LIS  A   ++  A KVF+       
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 74  ------------------------DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
                                   +I   DV  +N +I    +     +A  +F +M + 
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   +L AC       L + +H+ I   G+  ++ + N+LID YSKCG   V 
Sbjct: 193 NVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG--QVE 250

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A  LF  +  +D+VSWN++I G        EA  LF EM       + V+  +IL   A
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 226 KAGEMNLAFELFEKIPHR-----NIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
             G +++   +   I  +     N  S  T ++  Y+K GD+E A  +F+ M  K+L  W
Sbjct: 311 HLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G A     L+ +M + G++PDD T + +L+AC+ SG L LG  +  S+ +
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ 430

Query: 340 -YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKAL 397
            Y           ++D+    G    A  +   M  + D V W ++L     HG  E A 
Sbjct: 431 DYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAE 490

Query: 398 GLFSR--MKDEGFGPDKYTFVGVLCA 421
             F+R  MK E   P  Y  +  + A
Sbjct: 491 S-FARNLMKVEPENPGSYVLLSNIYA 515



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 21/198 (10%)

Query: 44  DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           D+   P +   LI   A C  +  A +VFN +    +  +N +I     +      F +F
Sbjct: 331 DVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLF 390

Query: 104 LDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
             M++ G+  D+ T+  LL AC+       G++ F  +   + +  K  ++G       +
Sbjct: 391 SRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYG------CM 444

Query: 157 IDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGG--ELSE--ARRLFDEMPE 211
           ID     G+     AK++  +M  E D V W S++    + G  EL+E  AR L    PE
Sbjct: 445 IDLLGHSGL--FKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPE 502

Query: 212 RDAVSWNTILDGYAKAGE 229
               S+  + + YA AGE
Sbjct: 503 NPG-SYVLLSNIYATAGE 519


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/627 (37%), Positives = 351/627 (55%), Gaps = 48/627 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  LH CK L   + + AQ+IK+ L    Y   KLI    L      +  AI VF  IQ+
Sbjct: 37  LSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQE 96

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P++ ++NT+ R    +S    A ++++ M   G+  +++T+PF+LK+C     F   Q I
Sbjct: 97  PNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQI 156

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G   D++V  SLI  Y + G   +  A K+F     RD+VS+ ++I G    G
Sbjct: 157 HGHVLKLGCDLDLYVHTSLISMYVQNG--RLEDAHKVFDKSPHRDVVSYTALIKGYASRG 214

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMV---- 252
            +  A++LFDE+P +D VSWN ++ GYA+ G    A ELF+ +   N+    STMV    
Sbjct: 215 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 274

Query: 253 ----------------WG------------------YSKDGDMEMAKLLFDRMPAKTLVP 278
                           W                   YSK G++E A  LF+R+P K ++ 
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I GY    + KEA  L+ +M  +G  P+D T++SIL ACA  G + +G  +H  I+
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 394

Query: 339 KYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           K R K  TN  +   +L+DMYAKCG ++ A  VFN +  K L SWNAM++G AMHG+ + 
Sbjct: 395 K-RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           +  LFSRM+  G  PD  TFVG+L AC+H+G +D G   F +M +DY + P++EHYGCMI
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLG SG  KEA  ++  M +EP+ +IW +LL AC+ H  VEL E   + LI+++  +PG
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
           +Y +LSNI+A+ G WN+VA  R  +     +K  G SS+E+D+ VHEF + D+ HP++ +
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633

Query: 576 IYQMINTLGKDLKPVGHAAKLSAEIGE 602
           IY M+  +   L+  G     S  + E
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQE 660


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 337/602 (55%), Gaps = 48/602 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  LH CK L   + + AQ+IK  L    Y   KLI    L      +  AI VF  IQ+
Sbjct: 6   LSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQE 65

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P++ ++NT+ R    +S    A  +++ M   G+  + +T+PFLLK+C     F   Q I
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K GY  D++V  SLI  Y + G   +  A+K+F     RD+VS+ ++I G    G
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNG--RLEDARKVFDQSSHRDVVSYTALITGYASKG 183

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--------------- 242
            ++ A+++FDE+P +D VSWN ++ GYA+ G    A ELF+++                 
Sbjct: 184 YIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVS 243

Query: 243 -----------RNIVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                      R + SW             + ++  Y K G++E A  LF+ +  K ++ 
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVIS 303

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I GY    + KEA  L+ +M  +G  P+D T++SIL ACA  G + +G  +H  IN
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYIN 363

Query: 339 KYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           K R K   N  +   +L+DMYAKCG ++ A  VF+ +  + L SWNAM++G AMHG+   
Sbjct: 364 K-RLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANA 422

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A  +FSRM+     PD  TFVG+L AC+H+G +D G   F SM+ DY I P++EHYGCMI
Sbjct: 423 AFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMI 482

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLG SG  KEA  ++ +M +EP+ +IW +LL AC+ +  VEL E     LI+++  +PG
Sbjct: 483 DLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPG 542

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
           +Y +LSNI+A  G WN+VA +R  +     +K  G SS+E+D+ VHEF + D+ HP++ +
Sbjct: 543 SYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 602

Query: 576 IY 577
           IY
Sbjct: 603 IY 604


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/594 (36%), Positives = 351/594 (59%), Gaps = 38/594 (6%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           +S P++ P+  S ++ L  +++N   C  +N+   L A +IK +  +D ++  + IS+  
Sbjct: 26  ISMPLQPPSRPSFKQTLLNRIKN---CSTINELHGLCASMIKTNAIQDCFLVHQFISASF 82

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYP 119
               +   +  F  +++P+V +YN +I+  V      +A + ++ M +E  V   ++T+ 
Sbjct: 83  ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFS 142

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            L+KAC       L QM+H  I+K G+   +FV  +L+D YSK  +              
Sbjct: 143 SLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI-------------- 188

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
                              LSEAR++FDEM ERDA +W  +L   A+ G+M+ A +LFE+
Sbjct: 189 -------------------LSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEE 229

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +P RN  +W+TM+ GY++ G++E A+LLF++MP K ++ WT +I+ Y++    ++A  +Y
Sbjct: 230 MPERNTATWNTMIDGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIY 289

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M   G+ PD+ T+ ++ +ACA  G L LG ++H  +       +  + +ALVDMYAKC
Sbjct: 290 SEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 349

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           GSLD ++ +F  +T K+L  WNA++ GLA+HG  EKAL +F+ M+ E   P+  TF+ +L
Sbjct: 350 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 409

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            ACTHAG +D+G   F SM RDY I P + HYGCM+D+L +SG L EAL L++SM  EPN
Sbjct: 410 SACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPN 469

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           +IIWG LL  C+ H   E+AE+ ++ L+ L+  + G+Y +L +++A   DW +VA++R  
Sbjct: 470 SIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSM 529

Query: 540 MKKTRAQKP-SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           MK+   +K   G+S +E++  +H+FS     HP S++IY ++  L   LK  G+
Sbjct: 530 MKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFILTELDGQLKLAGY 583


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/572 (38%), Positives = 337/572 (58%), Gaps = 10/572 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            NQ K + A++++L L +D Y+   ++           +  VF+ +++P++ L+NT+IR 
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V       A  ++  M+  G   +NFT PF+LKAC  K    L   IH+L+ K GY  D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +FV  SL+  Y KC     +L  K+F  + ++++VSW ++I G +  G   EA   F ++
Sbjct: 149 VFVKTSLLSLYVKCDNFDDAL--KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDM 261
            E     D+ S   +L   A+ G+      +   I      RN+   ++++  Y K G++
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A L+F  MP K +V W+ +I GYA  G+ ++A  L+ QM+   LKPD  T++ +L+AC
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A  G L LG+   + +++  F  N  +  AL+DMY+KCGS+  A  +F  M KKD V WN
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWN 386

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ GL+M+G  +    LFS ++  G  PD+ TF+G+LC CTH GF+++G Q+F +M+R 
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           + + P +EHYGCM+DLLGR+G L EA +L+ +MP++PNA++WG LLG C+ H    LAE+
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           VL  LI L+  + GNY  LSNI++    W +   +R  MK+ + QK    S +E+D  VH
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           EF V D+ H  SE+IY  ++ LG++LK VGH 
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/565 (37%), Positives = 339/565 (60%), Gaps = 5/565 (0%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLIS--SLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            + +QL A  +K  +   P+++ +L++  S      +G A  +F+ IQ   +  +NT+I+
Sbjct: 27  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 86

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V+N  +     +F ++  +    DNFT P ++K C         + IH L  K G+  
Sbjct: 87  CYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 145

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+FV  SL++ YSKCG   +  A+K+F  M ++D+V WNS+I G  + GE+  A +LF+E
Sbjct: 146 DVFVQGSLVNMYSKCG--EIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MPERDA SW  ++DG +K G++  A +LF+++P RN+VSW+ M+ GY K GD + A  LF
Sbjct: 204 MPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELF 263

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
            +MP   LV W ++I+GY   G   +A +++  M + G +P   TL+S+L+A +   +LG
Sbjct: 264 YQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLG 323

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
            G  +H+ + K  F+ +  +  +L++MYAKCG +++A++VF  + KK +  W A++ GL 
Sbjct: 324 KGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLG 383

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG    AL LF  M   G  P+   F+GVL AC HAG +D G QYF  M  +Y I P +
Sbjct: 384 IHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTL 443

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHYGC++D+L R+G L+EA   +++MP+ PN +IW +LLG  R H  +++ E     +I 
Sbjct: 444 EHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIE 503

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           +     G Y +LSN++AA+G W KV++VR  M K   +K  G SSVE    +HEF V D 
Sbjct: 504 VAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDI 563

Query: 569 LHPKSEQIYQMINTLGKDLKPVGHA 593
            HP++++IY  ++ + + LK VGH 
Sbjct: 564 SHPQTKEIYAKMSEMKEKLKCVGHV 588



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 206/508 (40%), Gaps = 108/508 (21%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + KQ+    +K+    D ++   L++  + C ++  A KVF+ + D DV L+N+LI  
Sbjct: 128 VQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDG 187

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             +      A ++F +M E+  F+                W                   
Sbjct: 188 YARCGEIDIALQLFEEMPERDAFS----------------W------------------- 212

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
                 L+D  SKCG   V  A+KLF  M  R++VSWN+MI G +K G+   A  LF +M
Sbjct: 213 ----TVLVDGLSKCG--KVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQM 266

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELF-------EKIPHRNIVSWSTMVWG-------- 254
           P  D V+WN ++ GY   G+   A ++F        +  H  +VS  + V G        
Sbjct: 267 PIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGR 326

Query: 255 ------------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
                                   Y+K G +E A  +F  +  K +  WT II G    G
Sbjct: 327 WIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHG 386

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVC 349
           MA  A  L+ +M + GLKP+    I +L AC  +GL+  G +     +N+Y+ +      
Sbjct: 387 MANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHY 446

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ---GEKALGLFSRMKD 405
             LVD+  + G L+ A +    M    + V W ++L G   HG+   GE A      +  
Sbjct: 447 GCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAP 506

Query: 406 EGFG-----PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL-- 458
           E  G      + Y   G+    +H     + + Y     +D G    VEH G + + +  
Sbjct: 507 ETIGCYILLSNMYAASGMWEKVSHV----REMMYKRGFRKDPG-CSSVEHKGTLHEFIVG 561

Query: 459 -----------GRSGRLKEALRLVQSMP 475
                       +   +KE L+ V  +P
Sbjct: 562 DISHPQTKEIYAKMSEMKEKLKCVGHVP 589


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/572 (37%), Positives = 337/572 (58%), Gaps = 10/572 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            NQ K + A++++L L +D Y+   ++           +  VF+ +++P++ L+NT+IR 
Sbjct: 29  FNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMIRG 88

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V       A  ++  M+  G   +NFT PF+LKAC  K    L   IH+L+ K GY  D
Sbjct: 89  LVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHD 148

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +FV  SL+  Y KC     +L  K+F  + ++++VSW ++I G +  G   EA   F ++
Sbjct: 149 VFVKTSLLSLYVKCDNFDDAL--KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKL 206

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDM 261
            E     D+ S   +L   A+ G+      +   I      RN+   ++++  Y K G++
Sbjct: 207 LEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNL 266

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A L+F  MP K +V W+ +I GYA  G+ ++A  L+ QM+   LKPD  T++ +L+AC
Sbjct: 267 ERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSAC 326

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A  G L LG+   + +++  F  N  +  AL+DMY+KCGS+  A  +F  M +KD V WN
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWN 386

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ GL+M+G  +    LFS ++  G  PD+ TF+G+LC CTH GF+++G Q+F +M+R 
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           + + P +EHYGCM+DLLGR+G L EA +L+ +MP++PNA++WG LLG C+ H    LAE+
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           VL  LI L+  + GNY  LSNI++    W +   +R  MK+ + QK    S +E+D  VH
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           EF V D+ H  SE+IY  ++ LG++LK VGH 
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGRELKAVGHV 598


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 338/583 (57%), Gaps = 18/583 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-----GLAIKVFNDI 75
           L  L  CK++   KQ+ A IIK     D  +      S ALC Q        A+ +   +
Sbjct: 26  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLS-ALCAQSLPIDPRYALSLLAQL 84

Query: 76  QDPDVHLYNTLIRA-CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + P++ LYN +IR     N+ + +   V+  M  KG+  DN+T PF+LKAC         
Sbjct: 85  RTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREG 144

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +H    K G   D++V N+L+  Y+ C V+    A+K+F +  +RD+VSW +MI G V
Sbjct: 145 EEVHGQAIKMGLASDVYVSNTLMRMYAVCDVI--RSARKVFDTSPQRDLVSWTTMIQGYV 202

Query: 195 KGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
           K G   E   LF EM     + D ++   +L   A+ G++ L  +L   I   + V+   
Sbjct: 203 KMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDV 262

Query: 251 MVWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            V       Y K GD   A+ +F  MP K +V W  +ISG A+KG  KE+  ++ +M+  
Sbjct: 263 FVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRL 322

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+KPDD TL+++L +CA  G+L LG  VHA +++ + + +  + NALVDMYAKCGS+D A
Sbjct: 323 GVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQA 382

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF  M +KD+ S+ AM+ GLAMHGQG KAL LFS M   G  PD+ TFVGVL AC+H 
Sbjct: 383 CWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHV 442

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +++G +YF  M   Y + PQ+EHYGCM+DLLGR+G + EA   +++MP+EP+A + G 
Sbjct: 443 GLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGA 502

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGAC+ H  VEL E V+  + +++    G Y ++SNI+++   W     +R  MK+   
Sbjct: 503 LLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNL 562

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           +K  G SS+E+D  +HEF   D+ HPK ++IY++++ +   LK
Sbjct: 563 EKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 605


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/581 (38%), Positives = 330/581 (56%), Gaps = 49/581 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI VF  IQ+P++ ++NT++R    +S    A  +++ M   G   +++++PFLLK+C  
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   + IHA + K G   D +V  SLI  Y++ G  G+  A+K+F +   RD+VS  
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNG--GLEDARKVFDASSHRDVVSCT 134

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----- 242
           ++I G    G+   AR++FDE+ ERD VSWN ++ GY + G    A ELF+++       
Sbjct: 135 ALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRP 194

Query: 243 ---------------------RNIVSW-----------------STMVWGYSKDGDMEMA 264
                                R + SW                 + ++  YSK GD+E A
Sbjct: 195 DEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETA 254

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             LF+ +  K +V W  +I GY    + KEA  L+ +M  +G  P+D TL+S+L ACA  
Sbjct: 255 FGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHL 314

Query: 325 GLLGLGMKVHASINKYRFKCNTN---VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           G + +G  +H  I+K + K  TN   +  +L+DMYAKCG ++ A  VFN M  + L SWN
Sbjct: 315 GAIDIGRWIHVYIDK-KLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWN 373

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM++G AMHG+   A  LFSRM+     PD  TFVG+L AC+H+G +D G Q F SM +D
Sbjct: 374 AMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQD 433

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y + P++EHYGCMIDLLG SG  KEA  ++ +MP+EP+ +IW +LL AC+KH  +ELAE 
Sbjct: 434 YNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAES 493

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               LI+++  + G+Y +LSNI+A  G W  VA VR  +     +K  G SS+EVD+ VH
Sbjct: 494 FAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVH 553

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           EF + D+LHP+  +IY M+  +   L+  G A   S  + E
Sbjct: 554 EFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQE 594



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 189/425 (44%), Gaps = 53/425 (12%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL------------- 67
           L++  K K   + +Q+ AQ++KL    D Y+   LIS  A  R  GL             
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYA--RNGGLEDARKVFDASSHR 128

Query: 68  --------------------AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
                               A KVF++I + DV  +N +I   V+N    +A  +F +M 
Sbjct: 129 DVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM 188

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC----GYFGDIFVPNSLIDSYSKC 163
              V  D  T   ++ AC       L + +H+ +       G+   + + N+LID YSKC
Sbjct: 189 RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNT 219
           G   V  A  LF  +  +D+VSWN++I G        EA  LF EM       + V+  +
Sbjct: 249 G--DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLS 306

Query: 220 ILDGYAKAGEMNLAFELFEKIPHR-----NIVSWST-MVWGYSKDGDMEMAKLLFDRMPA 273
           +L   A  G +++   +   I  +     N  S  T ++  Y+K GD+E A  +F+ M  
Sbjct: 307 VLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLY 366

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           ++L  W  +I G+A  G A  A  L+ +M    ++PDD T + +L+AC+ SGLL LG ++
Sbjct: 367 RSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQI 426

Query: 334 HASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHG 391
             S+ + Y           ++D+    G    A  + + M  + D V W ++L     HG
Sbjct: 427 FKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHG 486

Query: 392 QGEKA 396
             E A
Sbjct: 487 NLELA 491



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 49/222 (22%), Positives = 88/222 (39%), Gaps = 34/222 (15%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF  + + +L+ WN ML G A       AL ++ RM   G  P+ Y+F  +L +
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGC---------MIDLLGRSGRLKEALRLVQ 472
           C  +   ++G Q          I  QV   GC         +I +  R+G L++A R V 
Sbjct: 74  CAKSKAFEEGRQ----------IHAQVLKLGCGLDRYVHTSLISMYARNGGLEDA-RKVF 122

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
                 + +    L+           A +V D    +   D  ++  +   +   G + +
Sbjct: 123 DASSHRDVVSCTALITGYASRGDFRSARKVFD---EITERDVVSWNAMITGYVENGRYEE 179

Query: 533 VANVRLQMKKTRAQKPSG-----------ASSVEVDNEVHEF 563
              +  +M +T  +   G           + S+E+  +VH +
Sbjct: 180 ALELFKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSW 221


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/602 (37%), Positives = 337/602 (55%), Gaps = 48/602 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  LH CK L   + + A++IK  L    Y   KLI    L      +  AI VF+ IQ+
Sbjct: 6   LSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQE 65

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P++ ++NT+ R    +S    A  +++ M   G+  +++T+PFLLKAC     F   Q I
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQI 125

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G   D++V  SLI  Y K G      A+K+F     RD+VS+ ++I G    G
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNG--RXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--------------- 242
            +  A+++FDE+P +D VSWN ++ GYA+ G    A ELF+++                 
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243

Query: 243 -----------RNIVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                      R + SW             + ++  Y K G++E A  LF+ +  K ++ 
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVIS 303

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I GY    + KEA  L+ +M  +G  P++ T++SIL ACA  G + +G  +H  I+
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYID 363

Query: 339 KYRFKCNTN---VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           K R K  +N   +  +L+DMYAKCG ++ A  VF+ M  + L SWNAM++G AMHG+   
Sbjct: 364 K-RLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANP 422

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A  +FSRM+ +G  PD  TFVG+L AC+H+G +D G   F SM  DY I P++EHYGCMI
Sbjct: 423 AFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMI 482

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLG SG  KEA  ++ SM ++P+ +IW +LL AC+ H  VEL E     LI+++  + G
Sbjct: 483 DLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSG 542

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
           +Y +LSNI+A  G WN+VA  R  +     +K  G SS+E+D+ VHEF + D+LHP++ +
Sbjct: 543 SYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNRE 602

Query: 576 IY 577
           IY
Sbjct: 603 IY 604



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 34/254 (13%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF+ + + +L+ WN M  G A+      AL L+  M   G  P+ YTF  +L A
Sbjct: 53  LTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKA 112

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL---------LGRSGRLKEALRLVQ 472
           C  +    +G Q          I   V   GC +DL           ++GR ++A R V 
Sbjct: 113 CAKSKAFREGQQ----------IHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDA-RKVF 161

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
                 + + +  L+     +  +  A+++ D    +   D  ++  L + +A TG++ +
Sbjct: 162 DQSSHRDVVSYTALIKGYASNGYIXSAQKMFD---EIPVKDVVSWNALISGYAETGNYKE 218

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS--EQIYQMINT--LGKDLK 588
              +  +M KT   KP  ++ V V       S C Q        Q++  I+    G +LK
Sbjct: 219 ALELFKEMMKTNV-KPDESTMVTV------LSACAQSASIELGRQVHSWIDDHGFGSNLK 271

Query: 589 PVGHAAKLSAEIGE 602
            V     L  + GE
Sbjct: 272 IVNALIDLYIKCGE 285


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 335/593 (56%), Gaps = 48/593 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-GL--AIKVFNDIQDPDVHLYNTL 86
           L   + + AQ+IK  L    Y   KLI    L     GL  AI VF  IQ+P++ ++NT+
Sbjct: 3   LQSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTM 62

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
            R    +S    A ++++ M   G+  +++T+PFLLK+C     F   Q IH  + K G 
Sbjct: 63  FRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGC 122

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D++V  SLI  Y + G   +  A K+F     RD+VS+ ++I G    G +  A+++F
Sbjct: 123 DLDLYVHTSLISMYVQNG--RLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMF 180

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH------------------------ 242
           DE+P +D VSWN ++ GYA+ G    A ELF+ +                          
Sbjct: 181 DEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIE 240

Query: 243 --RNIVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
             R + SW             + ++  YSK G++E A  LF+ +P K ++ W  +I GY 
Sbjct: 241 LGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYT 300

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
              + KEA  L+ +M  +G  P+D T++SIL ACA  G + +G  +H  I+K R K   N
Sbjct: 301 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK-RLKGVAN 359

Query: 348 VCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
             +   +L+DMYAKCG ++ A  VFN +  K L SWNAM++G AMHG+ + +  +FSRM+
Sbjct: 360 ASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMR 419

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
             G  PD  TFVG+L AC+H+G +D G   F SM +DY + P++EHYGCMIDLLG SG  
Sbjct: 420 KNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLF 479

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
           KEA  ++ +M +EP+ +IW +LL AC+ H  VEL E     LI+++  +PG+Y +LSNI+
Sbjct: 480 KEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIY 539

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           A  G WN+VAN R  +     +K  G SS+E+D+ VHEF + D+ HP++ +IY
Sbjct: 540 ATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 592



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 190/417 (45%), Gaps = 45/417 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++  K K   + +Q+   ++KL    D Y+   LIS      ++  A KVF++    DV
Sbjct: 98  LKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDV 157

Query: 81  HLYNTLI-----RACVQN--------------SLNA------------QAFRVFLDMQEK 109
             Y  LI     R  ++N              S NA            +A  +F DM + 
Sbjct: 158 VSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 217

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   ++ AC       L + +H+ I   G+  ++ + N+LID YSKCG   + 
Sbjct: 218 NVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG--ELE 275

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A  LF  +  +D++SWN++I G        EA  LF EM       + V+  +IL   A
Sbjct: 276 TACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 335

Query: 226 KAGEMNLAFELFEKIPHR-----NIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
             G +++   +   I  R     N  S  T ++  Y+K GD+E A  +F+ +  K+L  W
Sbjct: 336 HLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 395

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G A  +  ++ +M + G++PDD T + +L+AC+ SG+L LG  +  S+ +
Sbjct: 396 NAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 455

Query: 340 -YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            Y+          ++D+    G    A  + N M  + D V W ++L    MHG  E
Sbjct: 456 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 512



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 107/245 (43%), Gaps = 16/245 (6%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF  + + +L+ WN M  G A+      AL L+  M   G  P+ YTF  +L +
Sbjct: 41  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKS 100

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C  +    +G Q  +      G    +  +  +I +  ++GRL++A ++    P   + +
Sbjct: 101 CAKSKAFKEG-QQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESP-HRDVV 158

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
            +  L+        +E A+++ D    +   D  ++  + + +A TG++ +   +   M 
Sbjct: 159 SYTALIKGYASRGYIENAQKMFD---EIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 215

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS--EQIYQMINT--LGKDLKPVGHAAKLS 597
           KT   +P  ++ V V       S C Q        Q++  I+    G +LK V     L 
Sbjct: 216 KTNV-RPDESTMVTV------VSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLY 268

Query: 598 AEIGE 602
           ++ GE
Sbjct: 269 SKCGE 273


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 345/562 (61%), Gaps = 34/562 (6%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           ++A ++K +  +D Y+  + IS+L+   +M  A+  +  ++ P+V +YN +I+  VQ+  
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
             QA  +++ M    V   ++T+P L+KAC   +     + +H  +++ G+   +FV  S
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215
           L+D YS  G                                  + E+ R+FDEMPERD  
Sbjct: 121 LVDFYSSMG---------------------------------RIEESVRVFDEMPERDVF 147

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
           +W T++ G  + G+M+ A  LF+ +P RN+ +W+T++ GY++  ++++A+LLF++MPA+ 
Sbjct: 148 AWTTMVSGLVRVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARD 207

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           ++ WT +I+ Y++    +EA  ++++M + G+ PD+ T+ ++++ACA  G L LG ++H 
Sbjct: 208 IISWTTMINCYSQNKRFREALGVFNEMAKHGISPDEVTMATVISACAHLGALDLGKEIHY 267

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            I ++ F  +  + +AL+DMYAKCGSLD ++ +F  + +K+L  WN+++ GLA+HG  E+
Sbjct: 268 YIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEGLAVHGYAEE 327

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           AL +F +M+ E   P+  TFV VL AC HAG I++G + F SM RD+ I P VEHYGCM+
Sbjct: 328 ALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMV 387

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLL ++G L+EAL+L+++M +EPNA+IWG LL  C+ H  +E+A+   + L+ L+  + G
Sbjct: 388 DLLSKAGLLEEALQLIRTMKLEPNAVIWGALLSGCKLHRNLEIAQVAANKLMVLEPGNSG 447

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP-SGASSVEVDNEVHEFSVCDQLHPKSE 574
            YT+L N+ A    W + A +RL MK+   +K   G+S +E++++VH+F+  D+ H  S+
Sbjct: 448 YYTLLVNMNAEVNRWGEAAKIRLTMKEQGVEKRCPGSSWIEMESQVHQFAASDKSHAASD 507

Query: 575 QIYQMINTLGKDLKPVGHAAKL 596
           +IY ++  L   +K  G+  +L
Sbjct: 508 EIYSLLAELDGQMKLAGYVPEL 529



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 35/170 (20%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  K++   I++     D YI   LI   A C  +  ++ +F  +++ ++  +N++I  
Sbjct: 259 LDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMFFKLREKNLFCWNSVIEG 318

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
              +    +A  +F  M+ + +  +  T+  +L ACN       G+  F  +   H++  
Sbjct: 319 LAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPP 378

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
              ++G       ++D  SK G++  +L     M + E + V W ++++G
Sbjct: 379 GVEHYG------CMVDLLSKAGLLEEALQLIRTMKL-EPNAVIWGALLSG 421


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 336/591 (56%), Gaps = 35/591 (5%)

Query: 9   TWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL-CRQMGL 67
           T F  +    + L  L  CK+    K++ AQ+I     +D +IA K + S A+  R +  
Sbjct: 19  TKFKSKNSNYKTLSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVSARNIDY 78

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  VF  I  PD + + T+IR  V+     +A   +  M+++GV  + FT+ F+LKA   
Sbjct: 79  AFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGL 138

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
           +  +   +++H  + K G+  D+F  N+LI  Y KC                        
Sbjct: 139 RPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKC------------------------ 174

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
                    G +++A  LFDEMP  + V+WNT++ G    G+   A  LF ++P RN+ S
Sbjct: 175 ---------GSITDAHLLFDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGS 225

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W+ +V GYSK G +++A+ LFD MP + +V W  +IS Y + G A EA  L+ +M  AG+
Sbjct: 226 WNAVVGGYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGV 285

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
             D   + SIL+ACA+ G L +G  +HA + + + + +  +  ALVDMYAKCG +D A  
Sbjct: 286 SADSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFG 345

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VFN M +K+L SWNAML GLA+HG G  AL LF +M+  G GP+  TFV VL AC+H G 
Sbjct: 346 VFNTMPRKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGS 405

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +++G + F  M++++ I P+VEHYGCM+D+L R G + EA  ++++MP+EPN +IWG LL
Sbjct: 406 VEEGWKKFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALL 465

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
            AC+ H    + E+V+  + +L   D G Y +LSNIFAA   WN+V   R  MK+   +K
Sbjct: 466 NACKVHGYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEK 525

Query: 548 P-SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
              G SS+E+D+ VH+F   D+LH K  ++  +I  L   L+  G+ A  S
Sbjct: 526 KIPGYSSIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLEVKGYEANPS 576


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/594 (35%), Positives = 351/594 (59%), Gaps = 38/594 (6%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           +S P++ P+  S ++ L  +++N   C  +N+   L A +IK +  +D ++  + IS+  
Sbjct: 123 ISMPLQPPSCPSFKQTLLNRIKN---CSTINELHGLCASMIKTNAIQDCFLVHQFISASF 179

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYP 119
               +   +  F  +++P+V +YN +I+  V      +A + ++ M +E  V   ++T+ 
Sbjct: 180 ALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYTFS 239

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            L+KAC       L QM+H  I+K G+   +FV  +L+D YSK  +              
Sbjct: 240 SLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEI-------------- 285

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
                              LSEAR++FDEM ERDA +W  ++   A+ G+M+ A +LFE+
Sbjct: 286 -------------------LSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEE 326

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +P RN  +W+TM+ GY++ G++E A+LLF++MP K ++ WT +I+ Y++    ++A  +Y
Sbjct: 327 MPERNTATWNTMIDGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIY 386

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M   G+ PD+ T+ ++ +ACA  G L LG ++H  +       +  + +ALVDMYAKC
Sbjct: 387 SEMRLNGIIPDEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKC 446

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           GSLD ++ +F  +T K+L  WNA++ GLA+HG  EKAL +F+ M+ E   P+  TF+ +L
Sbjct: 447 GSLDLSLLIFFKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISIL 506

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            ACTHAG +D+G   F SM RDY I P + HYGCM+D+L +SG L EAL L++SM  EPN
Sbjct: 507 SACTHAGLVDEGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFEPN 566

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           +IIWG LL  C+ H   E+AE+ ++ L+ L+  + G+Y +L +++A   DW +VA++R  
Sbjct: 567 SIIWGALLNGCKLHGNCEIAEDAVEQLMILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSM 626

Query: 540 MKKTRAQKP-SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           MK+   +K   G+S +E++  +H+FS     HP S++IY ++  L   LK  G+
Sbjct: 627 MKEKGVEKKYPGSSWIELEGTIHQFSASADSHPDSDKIYFVLTELDGQLKLAGY 680


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/618 (35%), Positives = 346/618 (55%), Gaps = 46/618 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKL--ISSLALCRQMGLAIKVFNDIQDPDVH 81
           + +C +L Q KQ  A +I+  +  DPY A KL  I++L+    +  A KVF++I  P+  
Sbjct: 38  IDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIPQPNSF 97

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDM--QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            +NTLIRA         +   FLDM   E   + + +T+PFL+KA    +   L Q +H 
Sbjct: 98  TWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHG 157

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           +  K     D+FV NSLI  Y  CG   +  A K+F ++ E+D+VSWNSMI G V+ G  
Sbjct: 158 MAIKSAVGSDVFVANSLIHCYFSCG--DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 215

Query: 200 SEARRLFDEMPERDAVS---------------------------------------WNTI 220
            +A  LF +M   D  +                                        N +
Sbjct: 216 DKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAM 275

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           LD Y K G +  A  LF+ +  ++ V+W+TM+ GY+   D E A+ + + MP K +V W 
Sbjct: 276 LDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWN 335

Query: 281 IIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
            +IS Y + G   EA  ++ +++ +  +K +  TL+S L+ACA+ G L LG  +H+ I K
Sbjct: 336 ALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKK 395

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
              K N  V +AL+ MY+KCG L+ A  VFN + K+D+  W+AM+ GLAMHG G +A+ +
Sbjct: 396 NGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDM 455

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F +M++    P+  TF  V CAC+H G +D+    FY ME  YGI+P+ +HY C++D+LG
Sbjct: 456 FYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIVDVLG 515

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           RSG L++A++ +++MP+ P+  +WG LLGAC+ H  + LAE     L+ L+  + G + +
Sbjct: 516 RSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDGAHVL 575

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSNI+A +G W+ V+ +R  M+ T  +K  G SS+E+D  +HEF   D  HP SE++Y  
Sbjct: 576 LSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGK 635

Query: 580 INTLGKDLKPVGHAAKLS 597
           ++ + + LK  G+  ++S
Sbjct: 636 LHEVMEKLKSNGYEPEMS 653


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 340/595 (57%), Gaps = 50/595 (8%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDVHLYNTLI 87
           +  + + AQ+IK  L    Y   KL+    +         AI VF+ IQ+P++ ++NT+ 
Sbjct: 2   SSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMF 61

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           R    +S    A +++L M   G+  D++T+PFLLK+C         Q IH  + K G+ 
Sbjct: 62  RGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            DI+V  SLI  Y++ G   +  A+K+F     RD+VS+ ++IAG V  G +  A++LFD
Sbjct: 122 LDIYVHTSLISMYAQNG--RLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFD 179

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-------PH------------------ 242
           E+P +D VSWN ++ GY + G    A ELF+++       P                   
Sbjct: 180 EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIE 239

Query: 243 --RNIVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
             R++ SW             + ++  YSK G++E A  LFD +  K ++ W  +I GY 
Sbjct: 240 LGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYT 299

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
              + KEA  L+ +M  +G  P+D T++SIL ACA  G + +G  +H  INK      TN
Sbjct: 300 HMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN 359

Query: 348 VCN---ALVDMYAKCGSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
           V +   +L+DMYAKCG +D A  VF+  M+ + L +WNAM+ G AMHG+   A  +FSRM
Sbjct: 360 VSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRM 419

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           +  G  PD  TFVG+L AC+H+G +D G   F SM R Y I P++EHYGCMIDLLG SG 
Sbjct: 420 RMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGL 479

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
            KEA  ++ +MP+EP+ +IW +LL AC+ H  +EL E     LI+++  + G+Y +LSNI
Sbjct: 480 FKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNI 539

Query: 524 FAATGDWNKVANVR-LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           +AA G WN+VA +R L   K   +K  G SS+E+D+ VHEF + D+LHP++ +IY
Sbjct: 540 YAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIY 594



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 189/420 (45%), Gaps = 48/420 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV--------- 71
           L++  K K   + +Q+   ++KL    D Y+   LIS  A   ++  A KV         
Sbjct: 96  LKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDV 155

Query: 72  ----------------------FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD-MQE 108
                                 F++I   DV  +N +I   V+     +A  +F + M  
Sbjct: 156 VSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMM 215

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
             V  D  T   ++ AC   +   L + +H+ I   G+  ++ + N+LID YSK G   V
Sbjct: 216 TNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFG--EV 273

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
             A +LF  +  +D++SWN++I G        EA  LF EM       + V+  +IL   
Sbjct: 274 ETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 333

Query: 225 AKAGEMNLAFELFEKIPHR------NIVSWST-MVWGYSKDGDMEMAKLLFD-RMPAKTL 276
           A  G +++   +   I  +      N+ S  T ++  Y+K GD++ A+ +FD  M  ++L
Sbjct: 334 AHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSL 393

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
             W  +ISG+A  G A  A  ++ +M   G++PDD T + +L+AC+ SG+L LG  +  S
Sbjct: 394 STWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRS 453

Query: 337 INK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
           + + Y           ++D+    G    A  + N M  + D V W ++L    +HG  E
Sbjct: 454 MTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 513



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 15/242 (6%)

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A+SVF+ + + +L+ WN M  G A+      AL L+  M   G  PD YTF  +L +C  
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           +    +G Q  +      G    +  +  +I +  ++GRL++A R V  +    + + + 
Sbjct: 102 SKIRKEG-QQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDA-RKVFDISSHRDVVSYT 159

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            L+        +E A+++ D    + G D  ++  + + +  TG++ +   +  +M    
Sbjct: 160 ALIAGYVSRGYIESAQKLFD---EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMT 216

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKS--EQIYQMINTLG--KDLKPVGHAAKLSAEI 600
             +P  ++ V V       S C Q         ++  IN  G   +LK V     L ++ 
Sbjct: 217 NVRPDESTMVTV------VSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 601 GE 602
           GE
Sbjct: 271 GE 272


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/633 (34%), Positives = 349/633 (55%), Gaps = 61/633 (9%)

Query: 21  LQNLHKCKNLNQTKQLFAQI-IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           L  +H CK L   K + A++ I+  +    ++  KL+   +       A KVF++I  P+
Sbjct: 6   LHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPN 65

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            +L+ +LI   V+N    +AF +F+ M+ + +   NFT   +LKA      F   Q ++ 
Sbjct: 66  AYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYG 125

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVG-----------------------------VSL 170
            + K G+  D+ V NS++D + +C  V                              V +
Sbjct: 126 FVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNNDRVDI 185

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGY------ 224
           A+K F  M ER++VSW SMI G VK G+++EA+ LFD MP +D  SWN ++ GY      
Sbjct: 186 ARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDC 245

Query: 225 -------------------------AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
                                     KAGE+  A + F+++P++N++SW  M+ GY K+G
Sbjct: 246 VNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDGYIKNG 305

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D   A+ LFD+MP K LV W+ +I GYA  G   +A  L+++ +E  +KPD+  ++ I++
Sbjct: 306 DTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGIIS 365

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC++ G++     +  +        +  V  +L+DMYAKCGS++ A+ +F     KDL+ 
Sbjct: 366 ACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLC 425

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           ++ M+  LA HG G  A+ LF +M+     PD  TF+GVL AC H G +D+G +YF  M 
Sbjct: 426 YSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMT 485

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            ++GI P  +HY C++DLLGR G L+EA  L+++MP+ P++++WG LL ACR H  V+LA
Sbjct: 486 EEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLA 545

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E     L +++  + GNY +LSNI+AA G W  VA VR ++++ R +K  G+S +E+ + 
Sbjct: 546 EVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSHV 605

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           VHEF + D  H  S+ I  ++  L +D+K  G+
Sbjct: 606 VHEFVMGDMSHTDSDSISLILYLLCEDMKLSGY 638


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/577 (37%), Positives = 339/577 (58%), Gaps = 37/577 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQ-RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           LQ     K+L   K L A +I+   + +D  +  KL+S       +  A +VF+++   +
Sbjct: 71  LQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKN 130

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V  +  +I A  ++    +A   F +MQ+ G+  ++FT+  +L AC       ++   H 
Sbjct: 131 VVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACTD---LEVLGEFHD 187

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            I K G+  ++FV N L+D Y+K G +    A++LF  M +RD+VSWN+MIAG V+ G +
Sbjct: 188 EIVKGGFESNVFVGNGLVDMYAKRGCI--EFARELFDKMPQRDVVSWNAMIAGYVQNGLI 245

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
            +A +LF E+P+RD ++WNT++ GYA+ G++  A ELFEK+P +N+VSW+TM+ GY ++G
Sbjct: 246 EDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNG 305

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD------------------- 300
            ++ A  LF  MP + ++ W  +ISG+A+ G  +EA +L+                    
Sbjct: 306 SVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQ 365

Query: 301 ------------QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
                       QM+   +KP+  T   +L ACA   +L  G + H  + +  F+ +  V
Sbjct: 366 NGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLV 425

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N LV MYAKCGS+++A  VF+ M ++D  S +AM+ G A++G  +++L LF +M+  G 
Sbjct: 426 GNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGL 485

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PD+ TFVGVL AC HAG +D+G QYF  M R Y I P +EHYGCMIDLLGR+G   EA 
Sbjct: 486 KPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEAN 545

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            L+  MP++P+A +WG+LL ACR HN ++L E+V   LI L   +P  Y +LSNI+AA G
Sbjct: 546 DLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAG 605

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
            W+ + +VR +MK  + +K  G S + +  +VH F V
Sbjct: 606 RWDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLV 642



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 221/474 (46%), Gaps = 63/474 (13%)

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FG 148
           C Q  L  +A  +  DM E G++  + TY  LL+ C         +++HA + +  +   
Sbjct: 40  CKQGRLR-EALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQ 98

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DI + N L+  Y K G   +  A+++F  M  +++VSW +MIA   +     EA   F E
Sbjct: 99  DISLGNKLVSIYVKLG--SLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYE 156

Query: 209 MP------------------------------------ERDAVSWNTILDGYAKAGEMNL 232
           M                                     E +    N ++D YAK G +  
Sbjct: 157 MQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEF 216

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A ELF+K+P R++VSW+ M+ GY ++G +E A  LF  +P + ++ W  +++GYA+ G  
Sbjct: 217 ARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDV 276

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC--N 350
           + A  L+++M E  L     +  +++A   ++G       V  +   ++     NV   N
Sbjct: 277 ENAVELFEKMPEQNLV----SWNTMIAGYVQNG------SVKEAFKLFQIMPERNVISWN 326

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           A++  +A+ G ++ A+ +F  M + ++VSWNAM+ G + +GQ E AL LF +M+     P
Sbjct: 327 AVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKP 386

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL-- 468
           +  TF  VL AC     +++G +    + R  G    V     ++ +  + G +++A   
Sbjct: 387 NTETFAIVLPACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKV 445

Query: 469 --RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
             R+ Q      +A+I G  +  C K  ++EL E+     ++  G  P   T +
Sbjct: 446 FDRMRQQDSASLSAMIVGYAINGCSKE-SLELFEQ-----MQFTGLKPDRVTFV 493



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 33/253 (13%)

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           ++    ++G  +EA  +   M E G+ P   T  S+L  C  +  L     +HA + + +
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 342 FKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
           F+C + ++ N LV +Y K GSL  A  VF+ M  K++VSW AM+   A H  G++ALG F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAG------------------FIDKGVQYFYS----- 437
             M+D G  P+ +TF  +L ACT                     F+  G+   Y+     
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCI 214

Query: 438 -MERD-YGILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK- 492
              R+ +  +PQ  V  +  MI    ++G +++AL+L Q +P + + I W T++    + 
Sbjct: 215 EFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIP-KRDVITWNTMMAGYAQC 273

Query: 493 ---HNAVELAEEV 502
               NAVEL E++
Sbjct: 274 GDVENAVELFEKM 286


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 337/602 (55%), Gaps = 48/602 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-GL--AIKVFNDIQD 77
           L  LH CK L   + + AQ+IK  L    Y   +L+    L     GL  AI VF  IQ+
Sbjct: 6   LSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQE 65

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P++ ++NT+ R    +S    A ++++ M   G+  +++T+PFLLK+C         Q I
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQI 125

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K GY  D++V  SLI  Y K G      A K+F     RD+VS+ ++I G    G
Sbjct: 126 HGHVLKLGYELDLYVHTSLISMYVKNG--RWKDAHKVFDGSSHRDVVSYTALITGYASRG 183

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--------------- 242
            +  A+++FDE+P +D VSWN I+ GYA  G    A +LF+++                 
Sbjct: 184 YIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVS 243

Query: 243 -----------RNIVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                      R + SW             + ++  YSK G++E A  LF  +  K ++ 
Sbjct: 244 ACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVIS 303

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I GY    + KEA  L+ +M  +G  P+D T++SIL ACA+ G +  G  +H  I+
Sbjct: 304 WNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYID 363

Query: 339 KYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           K R K  TN  +   +L+DMYAKCG ++ A  VFN M  + L + NAM++G AMHG+   
Sbjct: 364 K-RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANA 422

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A  +FSRM+  G  PD  TFVG+L AC+H+G +D G + F SM ++Y I P++EHYGCMI
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMI 482

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLG  G  KEA  ++ +M +EP+ +IW +LL AC+ H  VEL E     LI+++  +PG
Sbjct: 483 DLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPG 542

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
           +Y +LSNI+A  G WN+VAN+R  +     +K  G SS+E+D+ VHEF + D+ HP++ +
Sbjct: 543 SYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 602

Query: 576 IY 577
           IY
Sbjct: 603 IY 604



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 22/248 (8%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF  + + +L+ WN M  G A+      A+ L+  M   G  P+ YTF  +L +
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKS 112

Query: 422 CTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           C       +G Q + + ++  Y +   V  +  +I +  ++GR K+A ++        + 
Sbjct: 113 CAKLKVSKEGQQIHGHVLKLGYELDLYV--HTSLISMYVKNGRWKDAHKVFDG-SSHRDV 169

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           + +  L+        +E A+++ D    +   D  ++  + + +A TG+  +  ++  +M
Sbjct: 170 VSYTALITGYASRGYIESAQKMFD---EIPVKDVVSWNAIISGYADTGNNKEALDLFKEM 226

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT------LGKDLKPVGHAA 594
            KT   KP  ++ V V       S C Q    S Q+ + +++      LG +LK V    
Sbjct: 227 MKTNV-KPDESTMVTV------VSACAQ--SGSIQLGRQVHSWIDDHGLGSNLKIVNALI 277

Query: 595 KLSAEIGE 602
            L ++ GE
Sbjct: 278 DLYSKCGE 285


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 337/610 (55%), Gaps = 42/610 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKL-ISSLALCRQMGLAIKVFNDIQDPDVHL 82
           L    +L   KQ+ AQI++  L R   +  KL ISS AL   +  A+ VFN I  P+ HL
Sbjct: 30  LSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHL 89

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
            N  +R   ++    +   V+  M+ +G+  D F++P LLKA +          IH L  
Sbjct: 90  CNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAA 149

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+  D FV   L+  Y+ CG   ++ A+ +F  M  RD+V+W+ MI G  + G  ++A
Sbjct: 150 KLGFDSDPFVQTGLVRMYAACG--RIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDA 207

Query: 203 RRLFDEMP----ERDAVSWNTILDG----------------------------------- 223
             LF+EM     E D +  +T+L                                     
Sbjct: 208 LLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTM 267

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           YA  G M+LA  LFEK+  +N+V+ + MV GYSK G +E A+ +F++M  K LV W+ +I
Sbjct: 268 YASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMI 327

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SGYAE    +EA  L+++M+  G+KPD  T++S++ ACA  G L     +H  ++K  F 
Sbjct: 328 SGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFG 387

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
               + NAL++MYAKCGSL+ A  +F+ M +K+++SW  M+   AMHG    AL  F +M
Sbjct: 388 GALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQM 447

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           +DE   P+  TFVGVL AC+HAG +++G + FYSM  ++ I P+  HYGCM+DL GR+  
Sbjct: 448 EDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANL 507

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L+EAL LV++MP+ PN IIWG+L+ ACR H  +EL E     L+ L     G +  LSNI
Sbjct: 508 LREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLSNI 567

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +A    W  V  VR  MK     K  G S  E++NE+HEF V D+ H  +++IY+ +  +
Sbjct: 568 YAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLYEV 627

Query: 584 GKDLKPVGHA 593
              LK VG++
Sbjct: 628 VSKLKLVGYS 637



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 200/432 (46%), Gaps = 45/432 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ L + K+L +  ++     KL    DP++   L+   A C ++  A  +F+ +   DV
Sbjct: 129 LKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDV 188

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ +I    Q+ L   A  +F +M+   V  D      +L AC         +MIH  
Sbjct: 189 VTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDF 248

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I +     D  + ++L+  Y+ CG   + LA  LF  M  +++V+  +M+ G  K G++ 
Sbjct: 249 IMENNIVVDPHLQSALVTMYASCG--SMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIE 306

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI--------------- 245
            AR +F++M ++D V W+ ++ GYA++     A  LF ++    I               
Sbjct: 307 NARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACA 366

Query: 246 -------VSW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                    W                 + ++  Y+K G +E A+ +FD+MP K ++ WT 
Sbjct: 367 HLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTC 426

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV-HASINKY 340
           +IS +A  G A  A R + QME+  ++P+  T + +L AC+ +GL+  G K+ ++ IN++
Sbjct: 427 MISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEH 486

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGL 399
                      +VD++ +   L  A+ +   M    +++ W +++    +HG+ E  LG 
Sbjct: 487 NITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIE--LGE 544

Query: 400 FSRMKDEGFGPD 411
           F+  +     PD
Sbjct: 545 FAAKRLLELDPD 556



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 130/307 (42%), Gaps = 45/307 (14%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI------ 69
           +L   L    +  NL+  K +   I++ ++  DP++   L++  A C  M LA+      
Sbjct: 225 MLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKM 284

Query: 70  -------------------------KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
                                     VFN +   D+  ++ +I    ++    +A  +F 
Sbjct: 285 TPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFN 344

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           +MQ  G+  D  T   ++ AC         + IH  + K G+ G + + N+LI+ Y+KCG
Sbjct: 345 EMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCG 404

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF----DEMPERDAVSWNTI 220
              +  A+++F  M  ++++SW  MI+     G+   A R F    DE  E + +++  +
Sbjct: 405 --SLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGV 462

Query: 221 LDGYAKAGEMNLAFELF-EKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
           L   + AG +    ++F   I   NI    V +  MV  + +   +  A  L + MP   
Sbjct: 463 LYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMP--- 519

Query: 276 LVPWTII 282
           L P  II
Sbjct: 520 LAPNVII 526


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/627 (38%), Positives = 346/627 (55%), Gaps = 53/627 (8%)

Query: 15  RLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIK 70
           +LLE    L  L KC ++   KQ+ + IIK  L    +   KLI   AL   R +  A+ 
Sbjct: 21  KLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALS 80

Query: 71  VFNDI--QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
           +F+ I  Q P++ ++NTLIRA         +  +F  M   G++ ++ T+P L K+C   
Sbjct: 81  LFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKS 140

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
              H  + +HA   K        V  SLI  YS+ G   +  A+ +F     RD VS+ +
Sbjct: 141 KATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVG--ELRHARLVFDKSTLRDAVSFTA 198

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PH 242
           +I G V  G + +ARRLFDE+P +D VSWN ++ GY ++G    A   F ++      P+
Sbjct: 199 LITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPN 258

Query: 243 RN--------------------IVSW-------------STMVWGYSKDGDMEMAKLLFD 269
           ++                    I SW             + +V  YSK G++  A+ LFD
Sbjct: 259 QSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFD 318

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            M  K ++ W  +I GY    + +EA  L++ M    + P+D T +++L ACA  G L L
Sbjct: 319 GMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDL 378

Query: 330 GMKVHASINKYRFKCNTNVCN-----ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
           G  VHA I+K   K   NV N     +++ MYAKCG ++ A  VF  M  + L SWNAM+
Sbjct: 379 GKWVHAYIDK-NLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMI 437

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            GLAM+G  E+ALGLF  M +EGF PD  TFVGVL ACT AGF++ G +YF SM +DYGI
Sbjct: 438 SGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGI 497

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P+++HYGCMIDLL RSG+  EA  L+ +M +EP+  IWG+LL ACR H  VE  E V +
Sbjct: 498 SPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAE 557

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L  L+  + G Y +LSNI+A  G W+ VA +R ++     +K  G +S+E+D  VHEF 
Sbjct: 558 RLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFL 617

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVG 591
           V D+ HP+SE I++M++ + + L+  G
Sbjct: 618 VGDKFHPQSENIFRMLDEVDRLLEETG 644


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 343/617 (55%), Gaps = 45/617 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
           + +C +L Q KQ    +I+     DPY A KL +  AL     L  A KVF++I  P+  
Sbjct: 37  IERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            +NTLIRA         +   FLDM  E   + + +T+PFL+KA    +   L Q +H +
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K     D+FV NSLI  Y  CG   +  A K+F ++ E+D+VSWNSMI G V+ G   
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSCG--DLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPD 214

Query: 201 EARRLFDEMPERDAVS---------------------------------------WNTIL 221
           +A  LF +M   D  +                                        N +L
Sbjct: 215 KALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAML 274

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           D Y K G +  A  LF+ +  ++ V+W+TM+ GY+   D E A+ + + MP K +V W  
Sbjct: 275 DMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNA 334

Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +IS Y + G   EA  ++ +++ +  +K +  TL+S L+ACA+ G L LG  +H+ I K+
Sbjct: 335 LISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKH 394

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             + N +V +AL+ MY+KCG L+ +  VFN + K+D+  W+AM+ GLAMHG G +A+ +F
Sbjct: 395 GIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMF 454

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
            +M++    P+  TF  V CAC+H G +D+    F+ ME +YGI+P+ +HY C++D+LGR
Sbjct: 455 YKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGR 514

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           SG L++A++ +++MP+ P+  +WG LLGAC+ H  + LAE     L+ L+  + G + +L
Sbjct: 515 SGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLL 574

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SNI+A  G W  V+ +R  M+ T  +K  G SS+E+D  +HEF   D  HP SE++Y  +
Sbjct: 575 SNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKL 634

Query: 581 NTLGKDLKPVGHAAKLS 597
           + + + LK  G+  ++S
Sbjct: 635 HEVMEKLKSNGYEPEIS 651


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 332/589 (56%), Gaps = 48/589 (8%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-GL--AIKVFNDIQDPDVHLYNTLIRAC 90
           + + AQ+IK  L    Y   KLI    L     GL  AI VF  IQ+P++ ++NT+ R  
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
             +S    A  +++ M   G+  + +T+PFLLK+C     F   Q IH  + K GY  D+
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           +V  SLI  Y + G   +  A+K+F     RD+VS+ ++I G    G ++ A+++FDE+P
Sbjct: 124 YVHTSLISMYVQNG--RLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIP 181

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--------------------------RN 244
            +D VSWN ++ GYA+ G    A ELF+++                            R 
Sbjct: 182 IKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQ 241

Query: 245 IVSW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
           + SW             + ++  Y K G++E A  LF+ +  K ++ W  +I GY    +
Sbjct: 242 VHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN- 350
            KEA  L+ +M  +G  P+D T++SIL ACA  G + +G  +H  INK R K   N  + 
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINK-RLKGVANASSH 360

Query: 351 --ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             +L+DMYAKCG ++ A  VF+ +  + L SWNAM++G AMHG+   A  +FSRM+    
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PD  TFVG+L AC+H+G +D G   F SM+ DY I P++EHYGCMIDLLG SG  KEA 
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 480

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            ++ +M +EP+ +IW +LL AC+ H  VEL E     LI+++  +PG+Y +LSNI+A  G
Sbjct: 481 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 540

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            WN+VA +R  +     +K  G SS+E+D+ VHEF + D+ HP++ +IY
Sbjct: 541 RWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 589



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/417 (26%), Positives = 187/417 (44%), Gaps = 45/417 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS------SLALCRQ---------- 64
           L++  K K   + +Q+   ++KL    D Y+   LIS       L   R+          
Sbjct: 95  LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 65  ---------------MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
                          +  A K+F++I   DV  +N +I    +   N +A  +F +M + 
Sbjct: 155 VSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKT 214

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   ++ AC       L + +H+ I   G+  ++ + N+LID Y KCG   V 
Sbjct: 215 NVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG--EVE 272

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A  LF  +  +D++SWN++I G        EA  LF EM       + V+  +IL   A
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 226 KAGEMNLAFELFEKIPHR-----NIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
             G + +   +   I  R     N  S  T ++  Y+K GD+E A+ +FD +  ++L  W
Sbjct: 333 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 392

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G A  A  ++ +M +  ++PDD T + +L+AC+ SG+L LG  +  S+ +
Sbjct: 393 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKE 452

Query: 340 -YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            Y+          ++D+    G    A  + N M  + D V W ++L    MHG  E
Sbjct: 453 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVE 509


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/482 (43%), Positives = 299/482 (62%), Gaps = 7/482 (1%)

Query: 116 FTYPFLLKACNGKN--WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
            TYPF++KACN  +  WF L  ++H  + K G+  D ++ NSLI  Y+    +G   AK+
Sbjct: 1   MTYPFVIKACNESSVTWFGL--LVHTHVVKSGFECDSYIVNSLIHLYANGKDLGA--AKQ 56

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
           LF    +RD+VSWN+MI G VK GE+   R +FD M  RD +SWNTI++GYA  G+++ A
Sbjct: 57  LFSLCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTIINGYAIVGKIDEA 116

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
             LF+++P RN+VSW++M+ G+ K G++E A  LF  MP + +V W  +++ YA+ G   
Sbjct: 117 KRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 176

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA  L+DQM   G+KP + T++S+L+ACA  G L  G+ +H  IN  R + N+ V  ALV
Sbjct: 177 EALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 236

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DMYAKCG +  A  VFN M  KD+++WN ++ G+A+HG  ++A  LF  MK+    P+  
Sbjct: 237 DMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDI 296

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           TFV +L AC+HAG +D+G +    M   YGI P+VEHY C+IDLL R+G L+EA+ L+ +
Sbjct: 297 TFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGT 356

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP+EPN    G LLG CR H   EL E V   LI L+    G Y +LSNI+AA   W+  
Sbjct: 357 MPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDA 416

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP-VGH 592
             VR  MK     K  G S +E+   VH F   D  HP+S +IY  +N +   LK  +G+
Sbjct: 417 RKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGY 476

Query: 593 AA 594
           +A
Sbjct: 477 SA 478



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 184/400 (46%), Gaps = 82/400 (20%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           +   ++K   + D YI   LI   A  + +G A ++F+   D DV  +N +I   V+   
Sbjct: 22  VHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDRDVVSWNAMIDGYVKRGE 81

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
                 VF  M  + V +                W                       N+
Sbjct: 82  MGHTRMVFDRMVCRDVIS----------------W-----------------------NT 102

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215
           +I+ Y+  G   +  AK+LF  M ER++VSWNSM++G VK G + EA  LF EMP RD V
Sbjct: 103 IINGYAIVG--KIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVV 160

Query: 216 SWNTILDGYAKAGEMNLAFELFEKI------PHR-------------------------- 243
           SWN++L  YA+ G+ N A  LF+++      P                            
Sbjct: 161 SWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYI 220

Query: 244 -------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
                  N +  + +V  Y+K G + +A  +F+ M +K ++ W  II+G A  G  KEA 
Sbjct: 221 NDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQ 280

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDM 355
           +L+ +M+EA ++P+D T +++L+AC+ +G++  G K+   + + Y  +      + ++D+
Sbjct: 281 QLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDL 340

Query: 356 YAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            A+ G L+ AM +   M  + +  +  A+L G  +HG  E
Sbjct: 341 LARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFE 380


>gi|356505262|ref|XP_003521411.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Glycine max]
          Length = 566

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/533 (39%), Positives = 333/533 (62%), Gaps = 4/533 (0%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS-SLALCRQMGLAIKVFNDIQDPDVHL 82
           L  CK     +Q+ A II   L++D ++    IS +  L   +  A  VF+ +  P   L
Sbjct: 36  LKACKKREHLEQVHACIIHRGLEQDHFLVFLFISRAHTLLSTLSYASSVFHRVLAPSTVL 95

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NTLI++  Q +L +     F  M+  G   D+FTYP ++KAC+G       + +H   +
Sbjct: 96  WNTLIKSHCQKNLFSHTLSAFARMKAHGALPDSFTYPSVIKACSGTCKAREGKSLHGSAF 155

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +CG   D++V  SLID Y KCG   ++ A+K+F  M +R++VSW +M+ G V  G++ EA
Sbjct: 156 RCGVDQDLYVGTSLIDMYGKCG--EIADARKVFDGMSDRNVVSWTAMLVGYVAVGDVVEA 213

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R+LFDEMP R+  SWN++L G+ K G+++ A  +F+ +P +N+VS++TM+ GY+K GDM 
Sbjct: 214 RKLFDEMPHRNVASWNSMLQGFVKMGDLSGARGVFDAMPEKNVVSFTTMIDGYAKAGDMA 273

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ LFD    K +V W+ +ISGY + G+  +A R++ +ME   +KPD+  L+S+++A A
Sbjct: 274 AARFLFDCSLEKDVVAWSALISGYVQNGLPNQALRVFLEMELMNVKPDEFILVSLMSASA 333

Query: 323 ESGLLGLGMKVHASINKYRFKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           + G L L   V + ++K       + V  AL+DM AKCG+++ A+ +F+   ++D+V + 
Sbjct: 334 QLGHLELAQWVDSYVSKICIDLQQDHVIAALLDMNAKCGNMERALKLFDEKPRRDVVLYC 393

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ GL++HG+GE+A+ LF+RM  EG  PD+  F  +L AC+ AG +D+G  YF SM++ 
Sbjct: 394 SMIQGLSIHGRGEEAVNLFNRMLMEGLTPDEVAFTVILTACSRAGLVDEGRNYFQSMKQK 453

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y I P  +HY CM+DLL RSG +++A  L++ +P EP+A  WG LLGAC+ +   EL E 
Sbjct: 454 YCISPLPDHYACMVDLLSRSGHIRDAYELIKLIPWEPHAGAWGALLGACKLYGDSELGEI 513

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
           V + L  L+  +  NY +LS+I+AA   W  V+ VR +M++ R +K  G+S +
Sbjct: 514 VANRLFELEPLNAANYVLLSDIYAAAERWIDVSLVRSKMRERRVRKIPGSSKI 566


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 343/607 (56%), Gaps = 48/607 (7%)

Query: 41  IKLDLQRDPYIAPKLISSLALC---RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           IK+ L    Y   KL+    L      +  AI VF  IQ+P+   +NT+IR    +S   
Sbjct: 1   IKIGLHNTNYALSKLLDFCILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
            A  +++ M   G+  +++T+PFL K+C         + IHA I K G   D+ V  SLI
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
             Y++ G+V    A K+F +   RD+VS+ +MI G    G + +A+++FDE+P +D VSW
Sbjct: 121 SMYAQNGIV--EDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSW 178

Query: 218 NTILDGYAKAGEMNLAFELFEKI-------------------PH-------RNIVSW--- 248
           N ++ GYA+ G    A ELF ++                    H       R I SW   
Sbjct: 179 NAMISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDN 238

Query: 249 ----------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
                     + ++  YSK G+ME A  LF+ +  K ++ W  +I GYA     KEA  +
Sbjct: 239 HGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLV 298

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK---CNTNVCNALVDM 355
           + +M + G  P+D T++SIL ACA  G + +G  +H  I+K + K    NT++  +L+DM
Sbjct: 299 FQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDK-KLKGIITNTSLQTSLIDM 357

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKCG+++ A  VF+ +  K L S NAM++G AMHG+ + A  L SRMK +G  PD  TF
Sbjct: 358 YAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITF 417

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           VG+L AC+HAG  D G + F SM  DY I P++EHYGCMIDLLGRSG  KEA  L+ SM 
Sbjct: 418 VGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMT 477

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           +EP+ +IWG+LL AC+ H  +EL E +   L++++  +PG+Y +LSNI+A +  W+ VA 
Sbjct: 478 MEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVAR 537

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VR  +     +K  G SS+E+D+ VHEF + D+ HP++++IY+M+  +   L   G  + 
Sbjct: 538 VRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSD 597

Query: 596 LSAEIGE 602
            S  + E
Sbjct: 598 TSEVLQE 604


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/545 (38%), Positives = 323/545 (59%), Gaps = 36/545 (6%)

Query: 18  EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDI 75
           +++ Q    C  +   KQ+ A +I      +     +LI  SS+A+   M  A ++F  I
Sbjct: 14  QQRSQLWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHI 73

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            +PD  ++NT+IR   Q+     A  ++  M+   V  D FT+PF+LKAC    W  +  
Sbjct: 74  TEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGF 133

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H  +++ G+  + FV N+LI  ++ CG + V  A+ LF    +RD+V+W+++ AG  +
Sbjct: 134 GVHGRVFRLGFESNTFVRNTLIYFHANCGDLAV--ARALFDGSAKRDVVAWSALTAGYAR 191

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            GEL  AR+LFDEMP +D VSWN ++ GYAK GEM  A +LF+++P R++V+W+ M+   
Sbjct: 192 RGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMI--- 248

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
                                       +GY   G  ++A  ++++M   G  PD+ T++
Sbjct: 249 ----------------------------AGYVLCGSNQQALEMFEEMRSVGELPDEVTML 280

Query: 316 SILAACAESGLLGLGMKVHASINKYRFK-CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           S+L+AC + G L  G ++H  I++  F+  +  + NAL+DMYAKCGS+  A+ VF GM +
Sbjct: 281 SLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMRE 340

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD+ +WN++L GLA HG  EK++ LF+ M+     PD+ TFVGVL AC+HAG +++G QY
Sbjct: 341 KDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQY 400

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M  +Y I P + HYGCM+DLLGR+G L EA   + +M +EPNAI+W TLLGACR H 
Sbjct: 401 FDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHG 460

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            VEL       L++++  + G+Y +LSNI+A+ G+W+ V  VR  M  +  +K +G S +
Sbjct: 461 NVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLI 520

Query: 555 EVDNE 559
           E DN+
Sbjct: 521 EGDNK 525


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/572 (38%), Positives = 327/572 (57%), Gaps = 25/572 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD +    +++     R++G A K+F+ +   DV  +N ++    QN    +A  VF  
Sbjct: 105 ERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNK 164

Query: 106 MQEKGVFTDN---FTYPFLLKACNGKNWFHLVQMIHALIYKC---GYFG----------- 148
           M  +   + N     Y    +    +  F        + + C   GY             
Sbjct: 165 MPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLF 224

Query: 149 ------DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                 D+   N++I  Y++ G   +S AK+LF     RD+ +W +M++G V+ G + EA
Sbjct: 225 DRMPVRDVISWNTMISGYAQVG--DLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEA 282

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R+ FDEMP ++ +S+N +L GY +  +M +A ELFE +P RNI SW+TM+ GY ++G + 
Sbjct: 283 RKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIA 342

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ LFD MP +  V W  IISGYA+ G  +EA  ++ +M+  G   +  T    L+ CA
Sbjct: 343 QARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCA 402

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           +   L LG +VH  + K  F+    V NAL+ MY KCGS D A  VF G+ +KD+VSWN 
Sbjct: 403 DIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNT 462

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG G +AL LF  MK  G  PD+ T VGVL AC+H+G ID+G +YFYSM+RDY
Sbjct: 463 MIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDY 522

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            + P  +HY CMIDLLGR+GRL+EA  L+++MP +P A  WG LLGA R H   EL E+ 
Sbjct: 523 NVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKA 582

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + + +++  + G Y +LSN++AA+G W  V  +R +M++   QK +G S VEV N++H 
Sbjct: 583 AEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHT 642

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           FSV D  HP+ ++IY  +  L   ++  G+ +
Sbjct: 643 FSVGDCFHPEKDRIYAFLEELDLKMRREGYVS 674



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 49/249 (19%)

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           K    +IV+W+  +  + ++G  + A  +F+ MP ++ V +  +ISGY        A  L
Sbjct: 40  KFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDL 99

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +D+M E  L                                          N ++  Y +
Sbjct: 100 FDKMPERDLFS---------------------------------------WNVMLTGYVR 120

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
              L  A  +F+ M KKD+VSWNAML G A +G  ++A  +F++M       +  ++ G+
Sbjct: 121 NRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHR----NSISWNGL 176

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L A  H G + +  + F S + ++ ++     + C++    +   L +A +L   MPV  
Sbjct: 177 LAAYVHNGRLKEARRLFES-QSNWELIS----WNCLMGGYVKRNMLGDARQLFDRMPVR- 230

Query: 479 NAIIWGTLL 487
           + I W T++
Sbjct: 231 DVISWNTMI 239



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 64/286 (22%), Positives = 106/286 (37%), Gaps = 73/286 (25%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+  Q++K   +   ++   L+     C     A  VF  I++ DV  +NT+I    ++
Sbjct: 411 KQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARH 470

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               QA  +F  M++ GV  D  T   +L AC+                           
Sbjct: 471 GFGRQALVLFESMKKAGVKPDEITMVGVLSACS--------------------------H 504

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDI------VSWNSMIAGLVKGGELSEARRLFD 207
           + LID              + F SM +RD         +  MI  L + G L EA  L  
Sbjct: 505 SGLIDR-----------GTEYFYSM-DRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMR 552

Query: 208 EMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
            MP +  A SW  +L     A  ++   EL EK                        A++
Sbjct: 553 NMPFDPGAASWGALLG----ASRIHGNTELGEKA-----------------------AEM 585

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           +F   P  + + + ++ + YA  G   +  ++  +M EAG++   G
Sbjct: 586 VFKMEPQNSGM-YVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTG 630


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 346/616 (56%), Gaps = 64/616 (10%)

Query: 17  LEEK-LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +E+K L+ L  CKN+ + KQ   QI    LQ   ++ PKLI+              FN +
Sbjct: 1   MEQKMLRILQHCKNIRELKQTHLQIFIHGLQHSDFMLPKLIT----------VSSAFN-L 49

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            D   H                +A RV+  M+   V  ++FT+ FLLK           +
Sbjct: 50  LDYATH---------------KEALRVYSRMKALMVEANSFTFTFLLKCFETSQALEDGR 94

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           +IH  I K G+   +FV NSL+  Y+ C    +  A ++F  M ERD++SWNSMI+  + 
Sbjct: 95  VIHGEILKLGFGSSVFVQNSLLGFYANCSE-NLGSAYRVFEEMPERDVISWNSMISAYMT 153

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            GE+  A  L D+MPER+ V+WN+++ G +KAG M LA  +FE++P RN VSW++M+ GY
Sbjct: 154 RGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGY 213

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL-------- 307
            + GD+  A+ +F +MP KT+V WT +ISGYA  G  K A  +++ M    +        
Sbjct: 214 VRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMIS 273

Query: 308 ------------------------KPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
                                   +PD  TLISIL+ACA  G L  G  +++ I K +  
Sbjct: 274 GYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLH 333

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  + NAL+DM+AKCG ++NA  VF+ M+K+ +++W  M+ GLA++G+  +A+ LF +M
Sbjct: 334 LSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKM 393

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
             EG  PD   F+ VL ACTH G +++G + F  M +++GI P++EHYGCM+DLLGR+G+
Sbjct: 394 CLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGK 453

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L+EA+R    M ++PNA+IW TLL  C+ H   +L + V + ++  + S+P   T++SN+
Sbjct: 454 LEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNL 513

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI--- 580
            A+ G W  V + R+ M++ R +K  G SS++V N VHEF   D  H + ++IY+ +   
Sbjct: 514 SASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALSHY 573

Query: 581 -NTLGKDLKPVGHAAK 595
            N    +  P G  AK
Sbjct: 574 KNATEMETTPFGFLAK 589


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/570 (38%), Positives = 334/570 (58%), Gaps = 16/570 (2%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + +NL   + LF Q+     +RD      ++S  A    +  A ++F+++   +   +N 
Sbjct: 123 RYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSISWNG 178

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL-IYKC 144
           ++ A VQN     A R+F    +  + + N         C    +    +++ A  I+  
Sbjct: 179 MLAAYVQNGRIEDARRLFESKADWELISWN---------CMMGGYVKRNRLVDARGIFDR 229

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
               D    N++I  Y++ G   +  A++LF     RD+ +W +M++G V+ G L EARR
Sbjct: 230 MPERDEVSWNTMISGYAQNG--ELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARR 287

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           +FD MPE+++VSWN I+ GY +   M+ A ELFE +P +N+ SW+TM+ GY+++GD+  A
Sbjct: 288 VFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQA 347

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           +  FDRMP +  + W  II+GYA+ G  +EA  L+ +M+  G + +  T  S L+ CAE 
Sbjct: 348 RNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEI 407

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L LG +VH  + K   +    V NAL+ MY KCG++D+A  VF G+ +K++VSWN M+
Sbjct: 408 AALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMI 467

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A HG G++AL LF  MK  G  PD  T VGVL AC+H G +DKG +YFYSM +DYGI
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
               +HY CMIDLLGR+GRL +A  L+++MP EP+A  WG LLGA R H   EL E+   
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 587

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            +  ++  + G Y +LSN++AA+G W  V  +RL+M+    +K  G S VEV N++H F+
Sbjct: 588 MIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFT 647

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           V D +HP+ ++IY  +  L   +K  G+ +
Sbjct: 648 VGDSVHPERDRIYTFLEELDLKMKKEGYVS 677



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/513 (24%), Positives = 239/513 (46%), Gaps = 55/513 (10%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           Q   A+++FN +       +N +I  C+ N     A ++F  M  +    D  ++  ++ 
Sbjct: 64  QCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMPTR----DLVSWNVMIS 119

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
            C         +++   + +     D+   N+++  Y++ G V    AK++F  M  ++ 
Sbjct: 120 GCVRYRNLRAARLLFDQMPE----RDVVSWNAMLSGYAQNGYV--KEAKEIFDEMPCKNS 173

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +SWN M+A  V+ G + +ARRLF+   + + +SWN ++ GY K   +  A  +F+++P R
Sbjct: 174 ISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPER 233

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           + VSW+TM+ GY+++G++  A+ LF+  P + +  WT ++SGY + GM  EA R++D M 
Sbjct: 234 DEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMP 293

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSL 362
           E     +  +  +I+A   +   +    ++  ++      C N +  N ++  YA+ G +
Sbjct: 294 E----KNSVSWNAIIAGYVQCKRMDQARELFEAM-----PCQNVSSWNTMITGYAQNGDI 344

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
             A + F+ M ++D +SW A++ G A  G GE+AL LF  MK +G   ++ TF   L  C
Sbjct: 345 AQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 404

Query: 423 THAGFIDKGVQYF-------------------------YSMERDYGILPQVEH-----YG 452
                ++ G Q                            +++  Y +   +E      + 
Sbjct: 405 AEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWN 464

Query: 453 CMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
            MI    R G  KEAL L +SM    + P+ +    +L AC     V+   E    + + 
Sbjct: 465 TMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQD 524

Query: 510 KG--SDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            G  ++  +YT + ++    G  +   N+   M
Sbjct: 525 YGITANSKHYTCMIDLLGRAGRLDDAQNLMKNM 557



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 193/393 (49%), Gaps = 23/393 (5%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           DIV WN  I   ++ G+   A RLF+ MP R ++SWN ++ G     +  LA +LFEK+P
Sbjct: 48  DIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEKMP 107

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            R++VSW+ M+ G  +  ++  A+LLFD+MP + +V W  ++SGYA+ G  KEA  ++D+
Sbjct: 108 TRDLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDE 167

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M        +G    +LAA  ++G +    ++  S   +         N ++  Y K   
Sbjct: 168 MPCKNSISWNG----MLAAYVQNGRIEDARRLFESKADWELIS----WNCMMGGYVKRNR 219

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L +A  +F+ M ++D VSWN M+ G A +G+  +A  LF    +E    D +T+  ++  
Sbjct: 220 LVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLF----EESPVRDVFTWTAMVSG 275

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
               G +D+  + F  M     +      +  +I    +  R+ +A  L ++MP + N  
Sbjct: 276 YVQNGMLDEARRVFDGMPEKNSV-----SWNAIIAGYVQCKRMDQARELFEAMPCQ-NVS 329

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
            W T++    ++  +  A    D   R+   D  ++  +   +A +G   +  ++ ++MK
Sbjct: 330 SWNTMITGYAQNGDIAQARNFFD---RMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMK 386

Query: 542 K--TRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           +   R  + +  S++    E+    +  Q+H +
Sbjct: 387 RDGERLNRSTFTSTLSTCAEIAALELGKQVHGR 419


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/580 (37%), Positives = 337/580 (58%), Gaps = 16/580 (2%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           L    L+   + +NL   + LF Q+     +RD      ++S  A    +  A ++F+++
Sbjct: 32  LERHDLRGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEM 87

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              +   +N ++ A VQN     A R+F    +  + + N         C    +    +
Sbjct: 88  PCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWN---------CMMGGYVKRNR 138

Query: 136 MIHAL-IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           ++ A  I+      D    N++I  Y++ G +    A++LF     RD+ +W +M++G V
Sbjct: 139 LVDARGIFDRMPERDEVSWNTMISGYAQNGEL--LEAQRLFEESPVRDVFTWTAMVSGYV 196

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           + G L EARR+FD MPE+++VSWN I+ GY +   M+ A ELFE +P +N+ SW+TM+ G
Sbjct: 197 QNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITG 256

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y+++GD+  A+  FDRMP +  + W  II+GYA+ G  +EA  L+ +M+  G + +  T 
Sbjct: 257 YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTF 316

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S L+ CAE   L LG +VH  + K   +    V NAL+ MY KCG++D+A  VF G+ +
Sbjct: 317 TSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEE 376

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K++VSWN M+ G A HG G++AL LF  MK  G  PD  T VGVL AC+H G +DKG +Y
Sbjct: 377 KEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEY 436

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           FYSM +DYGI    +HY CMIDLLGR+GRL +A  L+++MP EP+A  WG LLGA R H 
Sbjct: 437 FYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHG 496

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             EL E+    +  ++  + G Y +LSN++AA+G W  V  +RL+M+    +K  G S V
Sbjct: 497 NTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWV 556

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           EV N++H F+V D +HP+ ++IY  +  L   +K  G+ +
Sbjct: 557 EVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVS 596


>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/422 (45%), Positives = 279/422 (66%), Gaps = 1/422 (0%)

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
           +++F  M ER++V+W SMI G +   +L  ARRLFD  PERD V WN ++ GY + G+M 
Sbjct: 33  REIFCEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMV 92

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
            A +LF ++P+R+++ W+T++ GY+ +G++E  + LF+ MP + +  W  +I GYA  G+
Sbjct: 93  EARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGL 152

Query: 292 AKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             E    + +M  E+ + P+D TL+++L+ACA  G L LG  VH        K N  V N
Sbjct: 153 FFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGN 212

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           AL+DMYAKCG ++NA+SVF GM  KDL+SWN ++ GLAMH +G  AL LF +MK+ G  P
Sbjct: 213 ALMDMYAKCGIIENAISVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKP 272

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TF+G+LCACTH G ++ G  YF SM  DY I+PQ+EHYGCM+D+L R+GRL++A+  
Sbjct: 273 DGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAF 332

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           V+ MPVE + +IW  LLGACR +  VELAE  L  LI L+  +P NY MLSNI+   G W
Sbjct: 333 VRKMPVEADGVIWAGLLGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRW 392

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             VA +++ M+ T  +K  G S +EV++ V EF   D+ HP+ E+IY ++  L K L+  
Sbjct: 393 EDVARLKVAMRDTGFKKLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSF 452

Query: 591 GH 592
           G+
Sbjct: 453 GY 454



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 160/356 (44%), Gaps = 43/356 (12%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR-VFLDMQEKGVFT-DNFTYPFLL 122
           M  A ++F+ I DP++ L+N++ R   Q    ++++R +F +M E+ V    +    ++L
Sbjct: 1   MTYARQLFDQIPDPNIALWNSMFRGYAQ----SESYREIFCEMFERNVVAWTSMINGYIL 56

Query: 123 KA--CNGKNWFHLVQMIHALIYK---CGYFG-----------------DIFVPNSLIDSY 160
            A   + +  F L      +++     GY                   D+   N+++  Y
Sbjct: 57  SADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGY 116

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRLFDE--MPERDA 214
           +  G   V   + LF  M ER+I SWN++I G    G   E     +R+  E  +P  DA
Sbjct: 117 ATNG--NVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDA 174

Query: 215 VSWNTILDGYAKAGEMNLA--FELFEKIP--HRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
            +  T+L   A+ G ++L     ++ +      N+   + ++  Y+K G +E A  +F  
Sbjct: 175 -TLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAISVFRG 233

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           M  K L+ W  +I G A      +A  L+ QM+ AG KPD  T I IL AC   GL+  G
Sbjct: 234 MDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDG 293

Query: 331 MKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAML 384
                S+ + Y           +VDM A+ G L+ AM+    M  + D V W  +L
Sbjct: 294 FAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLL 349



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 130/299 (43%), Gaps = 48/299 (16%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKN 129
           +F ++ + ++  +N LI     N L  +    F  M  E  V  ++ T   +L AC    
Sbjct: 128 LFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLG 187

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L + +H      G  G+++V N+L+D Y+KCG++  +++  +F  M  +D++SWN++
Sbjct: 188 ALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAIS--VFRGMDTKDLISWNTL 245

Query: 190 IAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL----------DGY----------- 224
           I GL      ++A  LF +M     + D +++  IL          DG+           
Sbjct: 246 IGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYL 305

Query: 225 ---------------AKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLF 268
                          A+AG +  A     K+P   + V W+ ++       ++E+A+L  
Sbjct: 306 IMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGLLGACRIYKNVELAELAL 365

Query: 269 DR---MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG-TLISILAACAE 323
            R   +  K    + ++ + Y + G  ++ ARL   M + G K   G +LI +  A  E
Sbjct: 366 QRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVE 424


>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/597 (38%), Positives = 345/597 (57%), Gaps = 16/597 (2%)

Query: 2   SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---S 58
           S P R   W +  R     LQ   + K++    Q+ A I++  L  +  +    ++   S
Sbjct: 5   SQPQRT-LWSNAERTCLHILQC--RTKSIPTLLQIHAFILRHSLHSNLNLLTAFVTTCAS 61

Query: 59  LALCRQMGLAI-----KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV-F 112
           LA   +  LAI     + FN     D  L N++I A       +Q F +F D++ +   F
Sbjct: 62  LAASAKRPLAIINHARRFFNATHTRDTFLCNSMIAAHFAARQFSQPFTLFRDLRRQAPPF 121

Query: 113 T-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171
           T D +T+  L+K C  +       ++H ++ K G   D++V  +L+D Y K GV+G   A
Sbjct: 122 TPDGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLGS--A 179

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
           +K+F  M  R  VSW ++I G  + G++SEARRLFDEM +RD V++N ++DGY K G + 
Sbjct: 180 RKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGCVG 239

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
           LA ELF ++  RN+VSW++MV GY  +GD+E AKL+FD MP K +  W  +I GY +   
Sbjct: 240 LARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQNRR 299

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
           + +A  L+ +M+ A ++P++ T++ +L A A+ G L LG  +H    + +   +  +  A
Sbjct: 300 SHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDRSARIGTA 359

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+DMYAKCG +  A   F GMT+++  SWNA++ G A++G  ++AL +F+RM +EGFGP+
Sbjct: 360 LIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEALEVFARMIEEGFGPN 419

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           + T +GVL AC H G +++G ++F +MER +GI PQVEHYGCM+DLLGR+G L EA  L+
Sbjct: 420 EVTMIGVLSACNHCGLVEEGRRWFNAMER-FGIAPQVEHYGCMVDLLGRAGCLDEAENLI 478

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           Q+MP + N II  + L AC   N V  AE VL  ++++     GNY ML N++A    W 
Sbjct: 479 QTMPYDANGIILSSFLFACGYFNDVLRAERVLKEVVKMDEDVAGNYVMLRNLYATRQRWT 538

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            V +V+  MKK    K    S +E+     EF+  D LH   E I   +  L K +K
Sbjct: 539 DVEDVKQMMKKRGTSKEVACSVIEIGGSFIEFAAGDYLHSHLEVIQLTLGQLSKHMK 595


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 331/571 (57%), Gaps = 5/571 (0%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDPDVH 81
           L  C    +  QL A  IK      P ++ +L++  A  R   +  A  +F+ IQ+P + 
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            +N LI+  ++N  +  A  +F  +    V  D+FT P +LK C         + IH L+
Sbjct: 82  SWNLLIKCYIENQRSNDAIALFCKLLCDFV-PDSFTLPCVLKGCARLGALQEGKQIHGLV 140

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D FV +SL+  YSKCG   + L +K+F  M ++D+VSWNS+I G  + GE+  
Sbjct: 141 LKIGFGVDKFVLSSLVSMYSKCG--EIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIEL 198

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A  +F+EMPE+D+ SW  ++DG +K+G++  A ++F+++P RN VSW+ M+ GY K GD 
Sbjct: 199 ALEMFEEMPEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDS 258

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             AK LFD+MP ++LV W  +I+GY       +A +L++ M    + P+  T++  ++A 
Sbjct: 259 NTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVSAA 318

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           +    LG G  VH+ I K  FK +  +   L++MY+KCGS+ +A+ VF  + KK L  W 
Sbjct: 319 SGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWT 378

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +++ GL MHG  E+ L LF  M   G  P   TF+GVL AC+HAGF +   +YF  M  D
Sbjct: 379 SVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYD 438

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI P +EHYGC+ID+L R+G L+EA   ++ MP++ N +IW +LL   RKH  + + E 
Sbjct: 439 YGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEY 498

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               LI L     G Y +LSN++AA G W KV  VR  MKK   +K  G SS+E    +H
Sbjct: 499 AAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIH 558

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EF V D+ HP++E+IY  +  + K L   GH
Sbjct: 559 EFIVGDKSHPQTEEIYIKLCEMKKKLNVAGH 589


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/585 (38%), Positives = 335/585 (57%), Gaps = 16/585 (2%)

Query: 22  QNLHKC-----KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
             L KC     K+L+Q KQ    +++L L +D Y+   L+ S         A  VF    
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTP 62

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQ 135
            P++ LYNTLIR  V N     A  V+  M++ G   DNFT+PF+LKAC    ++FH+  
Sbjct: 63  HPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGL 122

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H+L+ K G+  D+FV   L+  YSK G +  + A+K+F  + E+++VSW ++I G ++
Sbjct: 123 SLHSLVIKTGFDWDVFVKTGLVCLYSKNGFL--TDARKVFDEIPEKNVVSWTAIICGYIE 180

Query: 196 GGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVS 247
            G   EA  LF  + E     D+ +   IL   ++ G++     +   + E     N+  
Sbjct: 181 SGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFV 240

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            +++V  Y+K G ME A+ +FD M  K +V W+ +I GYA  GM KEA  ++ +M+   +
Sbjct: 241 ATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENV 300

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PD   ++ + +AC+  G L LG      ++   F  N  +  AL+D YAKCGS+  A  
Sbjct: 301 RPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKE 360

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF GM +KD V +NA++ GLAM G    A G+F +M   G  PD  TFVG+LC CTHAG 
Sbjct: 361 VFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGL 420

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +D G +YF  M   + + P +EHYGCM+DL  R+G L EA  L++SMP+E N+I+WG LL
Sbjct: 421 VDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALL 480

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           G CR H   +LAE VL  LI L+  + G+Y +LSNI++A+  W++   +R  + +   QK
Sbjct: 481 GGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQK 540

Query: 548 PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             G S VEVD  VHEF V D  HP S +IY+ + +L KDL+  G+
Sbjct: 541 LPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGY 585


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 336/619 (54%), Gaps = 50/619 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L    +L Q  Q+ AQ +   L    ++ PKLI        +  A  V +    P  
Sbjct: 3   LSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLID----LHSIDYARFVLDQTPSPTD 58

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N+LIRA   +     +  ++L M        NFT+PF+LKAC+        + IH  
Sbjct: 59  FSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTH 118

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G+  D+FV NSLID Y KC    +  A+  +  MG RD VSWNS+I+G V+ G++ 
Sbjct: 119 VLRLGFGSDLFVCNSLIDMYCKC--FRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVE 176

Query: 201 EARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFE--------------------- 238
           +AR LF+EMP  R+ V W  +++GY K G+      LF                      
Sbjct: 177 KARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLS 236

Query: 239 ---------------------KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
                                KIP  N +  + ++  YSK GD+E A  +FD +  K L 
Sbjct: 237 ACSTLCNYEVGRFLSVFIDVNKIP-LNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLP 295

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  II+G  + G+ +EA  LY  M+   +KP++ TL+++L+ACA  G L LG +VH  +
Sbjct: 296 SWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLYL 355

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            +     N  +  ALVDMYAKCG +D+A  +F   ++KD+  WNAM+ GLA HG G  +L
Sbjct: 356 GRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSL 415

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +FS+M   G  P+  TF+GVL AC H+G +++G   F SM   +G+ P++EHY CM+DL
Sbjct: 416 AVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDL 475

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G LKEA  LVQ+M + P++IIWG LL ACR H  +ELA+++ + ++  +  + G  
Sbjct: 476 LGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGFC 535

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A++G W  VA VR Q+K+ R +KPSG S VEVD  VH F V D  H KS +IY
Sbjct: 536 ILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEIY 595

Query: 578 QMINTLGKDLKPVGHAAKL 596
                L   LK  G+ A  
Sbjct: 596 GAYEILVNHLKAEGYVANF 614


>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
          Length = 751

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/604 (36%), Positives = 358/604 (59%), Gaps = 23/604 (3%)

Query: 2   SAPIRAPTWFSKRRLLEEK-LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           S P+R     S    +E K L  L + K      Q+ A +++  L+ +P +  K I   A
Sbjct: 136 SQPMRGNQQQSLWSPIERKCLSLLQQSKTRANLLQIHAFMLRNALETNPNLFTKFI---A 192

Query: 61  LCRQMGLAIKVFNDI--------------QDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
            C  + L   +++ +                 D  L N++I+A V     +++F ++ D+
Sbjct: 193 TCSSIALLAPLYDPLAGIVHARRMFDHRPHRDDAFLCNSMIKAYVGMRQYSESFALYRDL 252

Query: 107 QEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           +    FT D+FT+  L K+C         Q IH+ +   G+  D++   +L+D Y+K G 
Sbjct: 253 RRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLYAATALVDMYAKFG- 311

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
             +  A+KLF  M +R  VSW ++I G V+ G++  A +LFD+M E+D+ ++NT++D Y 
Sbjct: 312 -KMDCARKLFDEMIDRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNTMIDAYV 370

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           K G+M  A +LF+++P R++VSW+ M++GYS +G+++ A+ LFD MP K L  W  +ISG
Sbjct: 371 KLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNAMISG 430

Query: 286 YAEKGMAKEAARLYDQMEE-AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           Y +     EA +L+ +M+    L+PD+ T++S+L A A+ G L LG  VH  + + +   
Sbjct: 431 YXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDR 490

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
            TNV  AL+DMYAKCG +  +  VF+ M +K+  SWNA++   A++G+ ++ALGLF  M 
Sbjct: 491 ATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMN 550

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            +GF P++ T +GVL AC H+G +++G ++F +ME ++G+ P++EHYGCM+DLLGR+G L
Sbjct: 551 HKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAME-EFGLTPKIEHYGCMVDLLGRAGCL 609

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
           +EA +L++SMP E N II  + L AC     V  AE VL   I+++  + GNY ML N++
Sbjct: 610 QEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKEAIKMEAWNDGNYIMLRNLY 669

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584
           A    W +   V+  M++   +K +G S++EVD+ V EF   D++HPK E I+ ++  L 
Sbjct: 670 ANEKRWKEADEVKGLMRRNGVKKEAGCSAIEVDSRVWEFVAGDRVHPKWEAIHSVLGQLW 729

Query: 585 KDLK 588
             +K
Sbjct: 730 VHMK 733


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 335/570 (58%), Gaps = 14/570 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +NL + ++LF    ++  +RD      ++S  A    +  A  VF+ + + +   +N L+
Sbjct: 140 RNLGKARELF----EIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALL 195

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A VQNS   +A  +F   +   + + N      +K    K      Q   ++  +    
Sbjct: 196 SAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKK---KKIVEARQFFDSMNVR---- 248

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+   N++I  Y++ G   +  A++LF     +D+ +W +M++G ++   + EAR LFD
Sbjct: 249 -DVVSWNTIITGYAQSG--KIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           +MPER+ VSWN +L GY +   M +A ELF+ +P RN+ +W+TM+ GY++ G +  AK L
Sbjct: 306 KMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNL 365

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD+MP +  V W  +I+GY++ G + EA RL+ QME  G + +  +  S L+ CA+   L
Sbjct: 366 FDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVAL 425

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++H  + K  ++    V NAL+ MY KCGS++ A  +F  M  KD+VSWN M+ G 
Sbjct: 426 ELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGY 485

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           + HG GE AL  F  MK EG  PD  T V VL AC+H G +DKG QYFY+M +DYG++P 
Sbjct: 486 SRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPN 545

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            +HY CM+DLLGR+G L++A  L+++MP EP+A IWGTLLGA R H   ELAE   D + 
Sbjct: 546 SQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIF 605

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            ++  + G Y +LSN++A++G W  V  +R++M+    +K  G S +E+ N+ H FSV D
Sbjct: 606 AMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGD 665

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           + HP+ ++I+  +  L   +K  G+ +K S
Sbjct: 666 EFHPEKDEIFAFLEELDLRMKKAGYVSKTS 695



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 105/356 (29%), Positives = 175/356 (49%), Gaps = 35/356 (9%)

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + KCG   DI   N  I SY + G    +L  ++F  M     VS+N MI+G ++ GE  
Sbjct: 56  LLKCGD-SDIKEWNVAISSYMRTGRCNEAL--RVFKRMPRWSSVSYNGMISGYLRNGEFE 112

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            AR+LFDEMPERD VSWN ++ GY +   +  A ELFE +P R++ SW+TM+ GY+++G 
Sbjct: 113 LARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGC 172

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ A+ +FDRMP K  V W  ++S Y +    +EA  L+   E   L             
Sbjct: 173 VDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL------------- 219

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNV-----CNALVDMYAKCGSLDNAMSVFNGMTKK 375
            + + LLG  +K    +   +F  + NV      N ++  YA+ G +D A  +F+    +
Sbjct: 220 VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+ +W AM+ G   +   E+A  LF +M +     ++ ++  +L        ++   + F
Sbjct: 280 DVFTWTAMVSGYIQNRMVEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELF 335

Query: 436 YSMERDYGILP--QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
                   ++P   V  +  MI    + G++ EA  L   MP + + + W  ++  
Sbjct: 336 -------DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 383



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 195/402 (48%), Gaps = 23/402 (5%)

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           K  +  G+ DI  WN  I+  ++ G  +EA R+F  MP   +VS+N ++ GY + GE  L
Sbjct: 54  KPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFEL 113

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LF+++P R++VSW+ M+ GY ++ ++  A+ LF+ MP + +  W  ++SGYA+ G  
Sbjct: 114 ARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCV 173

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
            +A  ++D+M E     +D +  ++L+A  ++      M+    + K R        N L
Sbjct: 174 DDARSVFDRMPE----KNDVSWNALLSAYVQNS----KMEEACMLFKSRENWALVSWNCL 225

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +  + K   +  A   F+ M  +D+VSWN ++ G A  G+ ++A  LF    DE    D 
Sbjct: 226 LGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLF----DESPVQDV 281

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
           +T+  ++        +++  + F  M     +      +  M+    +  R++ A  L  
Sbjct: 282 FTWTAMVSGYIQNRMVEEARELFDKMPERNEV-----SWNAMLAGYVQGERMEMAKELFD 336

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
            MP   N   W T++    +   +  A+ + D   ++   DP ++  +   ++ +G   +
Sbjct: 337 VMPCR-NVSTWNTMITGYAQCGKISEAKNLFD---KMPKRDPVSWAAMIAGYSQSGHSFE 392

Query: 533 VANVRLQMKKT--RAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
              + +QM++   R  + S +S++    +V    +  QLH +
Sbjct: 393 ALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 434


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 343/611 (56%), Gaps = 52/611 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-----QMGLAIKVFNDIQDP 78
           L  CK++   KQ+ AQI ++ L +D     KL   +A C       +  A K+F  I+ P
Sbjct: 44  LKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKL---MAFCTDPFNGNLNYAEKMFKYIRYP 100

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            + +YN +I+A  +     +   +F  ++E G++ DNFTYPF+ KA          + + 
Sbjct: 101 CLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYPFVFKAIGYLGEVSKAEKLR 160

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
            L+ K G   D +V NSLID Y++  +  V   K LF  M +RD++SWN MI+G VK   
Sbjct: 161 GLVTKTGLEFDTYVRNSLIDMYAQLALTDV--MKMLFDEMPDRDVISWNVMISGYVKCRR 218

Query: 199 LSEARRLFDEMPE----------------------------------RDAVSW-----NT 219
             +A  +F  M E                                  RD V +     N 
Sbjct: 219 FEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTPIIGNA 278

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           +LD Y K G +++A  +FE++P +N++ W+TMV GY+  G++E A+ LF+  P + +V W
Sbjct: 279 LLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIW 338

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           T +I+GY +     EA  L+ +M+   +KPD   ++S+L  CA++G +  G  +H  I++
Sbjct: 339 TAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDE 398

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
            R   +  V  AL++MYAKCG ++ A+ +F G+  KD  SW +++ GLAM+G+  KAL L
Sbjct: 399 NRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALEL 458

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           FS+MK  G  PD  TF+GVL AC+H G +++G ++F SM  +Y I P+VEHYGC++DLLG
Sbjct: 459 FSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLG 518

Query: 460 RSGRLKEALRLVQSMPVEPNAI---IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           R+G L EA  L++ +P E  AI   ++G+LL ACR +  VE+ E V   L++ + SD   
Sbjct: 519 RAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKFESSDSSV 578

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           +T+L+NI+A    W  V  VR +MK    +K  G SS+EVD+ +HEF      HP+  +I
Sbjct: 579 HTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDSIIHEFFSGHPSHPEMREI 638

Query: 577 YQMINTLGKDL 587
           Y M+N + K L
Sbjct: 639 YYMLNIMAKPL 649


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/556 (37%), Positives = 320/556 (57%), Gaps = 45/556 (8%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  AI +F  IQ+P++ ++NT+ R    NS +  A ++++ M   G+  +++++PFLLK+
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C         Q IH  + K GY  D++V  SLI  Y++ G   +  A K+F     R +V
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNG--RLEDAHKVFDRSSHRHVV 132

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           S+ ++I G    G ++ AR+LFDE+  +D VSWN ++ GY +      A EL++ +   N
Sbjct: 133 SYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTN 192

Query: 245 IV--------------------------SW-------------STMVWGYSKDGDMEMAK 265
           +                           SW             + ++  YSK G++E A 
Sbjct: 193 VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETAC 252

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LF  +  K ++ W  +I G+    + KEA  L+ +M  +G  P+D T++S+L ACA  G
Sbjct: 253 GLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 312

Query: 326 LLGLGMKVHASINKYRFKCNTN---VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            + +G  +H  INK R K  TN   +  +L+DMYAKCG ++ A  VF+ M  + L SWNA
Sbjct: 313 AIDIGRWIHVYINK-RLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNA 371

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M++G AMHG+   A  LFS+M+  G  PD  TFVG+L AC+H+G +D G   F SM +DY
Sbjct: 372 MIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDY 431

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I P++EHYGCMIDLLG  G  KEA  ++++MP+EP+ +IW +LL AC+ HN VEL E  
Sbjct: 432 KITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESY 491

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              LI+++  +PG+Y +LSNI+A  G W++VA +R  +     +K  G SS+E+D+ VHE
Sbjct: 492 AQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHE 551

Query: 563 FSVCDQLHPKSEQIYQ 578
           F + D+ HP++ +IY+
Sbjct: 552 FIIGDKFHPRNREIYR 567



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 190/417 (45%), Gaps = 45/417 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN------- 73
           L++  K K L + +Q+   ++KL    D Y+   LIS  A   ++  A KVF+       
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 74  ------------------------DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
                                   +I   DV  +N +I   V+     +A  ++ DM + 
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   ++ AC       L + +H+ I   G+  +I + N LID YSKCG   V 
Sbjct: 192 NVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCG--EVE 249

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A  LF  + ++D++SWN++I G        EA  LF EM       + V+  ++L   A
Sbjct: 250 TACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309

Query: 226 KAGEMNLAFELFEKIPHR--NIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPW 279
             G +++   +   I  R   + + S+++      Y+K GD+E AK +FD M  ++L  W
Sbjct: 310 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 369

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G A  A  L+ +M + G+ PDD T + +L+AC+ SG+L LG  +  S+++
Sbjct: 370 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 429

Query: 340 -YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
            Y+          ++D+   CG    A  +   M  + D V W ++L    MH   E
Sbjct: 430 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 486


>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Cucumis sativus]
          Length = 542

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/539 (38%), Positives = 315/539 (58%), Gaps = 40/539 (7%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHL 82
            KC N    KQL A +I   L     +  +LI  S++ +   M  A ++F  I  PD+ +
Sbjct: 21  QKCTNFRSLKQLHAFLIVNGLNSTTSVLRELIFVSAIVVSGTMDYAHQLFAQISQPDIFM 80

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NT+IR   Q    A A  ++  M+ +GV  D FT+ F+LKAC   +W  L   IH  + 
Sbjct: 81  WNTMIRGSAQTLKPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVL 140

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+  + FV N+LI  ++ CG                                 +L+ A
Sbjct: 141 KSGFQSNTFVRNTLIYFHANCG---------------------------------DLATA 167

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R LFD   +R+ V W+ +  GYA+ G++++A +LF+++P +++VSW+ M+  Y+K G+ME
Sbjct: 168 RALFDASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEME 227

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ LFD +P K +V W  +I+GY    + KEA  ++D M + G +PDD T++SIL+A A
Sbjct: 228 KARKLFDEVPKKDVVTWNAMIAGYVLSRLNKEALEMFDAMRDLGQRPDDVTMLSILSASA 287

Query: 323 ESGLLGLGMKVHASINKYRFKC---NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           + G L +G K+H SI  +   C   +  + NAL+DMYAKCGS+ NA+ VF GM KKD  S
Sbjct: 288 DLGDLEIGKKIHRSI--FDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQGMRKKDTSS 345

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+++ GLA+HG  E+++ LF  M      P++ TFV VL AC+HAG + +G  YF  M+
Sbjct: 346 WNSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMK 405

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             + I P ++HYGCM+D+LGR+G L EA   + +M +EPNAIIW TLLGACR H  VEL 
Sbjct: 406 NVFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIEPNAIIWRTLLGACRVHGDVELG 465

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
               + L++++  + G+Y +LSNI+A+ G+W+ V  VR  M     +K  G S ++ DN
Sbjct: 466 RRANEQLLKMRKDESGDYVLLSNIYASQGEWDGVQKVRKLMDDGGVKKKVGHSLIDSDN 524


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 351/625 (56%), Gaps = 51/625 (8%)

Query: 18  EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-----RQMGLAIKVF 72
           E  +  L KCK++ Q KQ+ +  IK+ L  DP    ++I   A C      +M  A +VF
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVI---AFCCAHESGKMIYARQVF 64

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + I  P + ++NT+I+   + +       ++L M    +  D FT+PFLLK         
Sbjct: 65  DAIPQPTLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQ 124

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIA 191
             +++     K G+  ++FV  + I  +S C +V   LA+K+F  MG+  ++V+WN M++
Sbjct: 125 YGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLV--DLARKVF-DMGDAWEVVTWNIMLS 181

Query: 192 GLVKGGELSEARRLFDEMP---------------------------------------ER 212
           G  +  +  +++ LF EM                                        ER
Sbjct: 182 GYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVER 241

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + +  N ++D +A  GEM+ A  +F+ + +R+++SW+++V G++  G +++A+  FD++P
Sbjct: 242 NLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIP 301

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            +  V WT +I GY       EA  L+ +M+ + +KPD+ T++SIL ACA  G L LG  
Sbjct: 302 ERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEW 361

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           V   I+K   K +T V NAL+DMY KCG++  A  VF  M  KD  +W AM+ GLA++G 
Sbjct: 362 VKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGH 421

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           GE+AL +FS M +    PD+ T++GVLCACTHAG ++KG  +F SM   +GI P V HYG
Sbjct: 422 GEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYG 481

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+DLLGR+GRL+EA  ++ +MPV+PN+I+WG+LLGACR H  V+LAE     ++ L+  
Sbjct: 482 CMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPE 541

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           +   Y +L NI+AA   W  +  VR  M +   +K  G S +E++  V+EF   DQ HP+
Sbjct: 542 NGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQ 601

Query: 573 SEQIYQMINTLGKDLKPVGHAAKLS 597
           S++IY  +  + +DL   G++   S
Sbjct: 602 SKEIYAKLENMMQDLIKAGYSPDTS 626


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/631 (37%), Positives = 349/631 (55%), Gaps = 50/631 (7%)

Query: 15  RLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ--MGLAIK 70
           ++LE+   L  L KCKN+N  KQ+ + IIK  L    ++  KLI   A+     +  A+ 
Sbjct: 24  KILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALS 83

Query: 71  VFNDIQDPDVH---LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           +F + Q    H   ++N+LIR    +S    +  +F  M   GV  ++ T+PFL K+C  
Sbjct: 84  LFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTK 143

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
               H  + +HA   K     +  V  S+I  Y+  G   +  A+ +F     RD VS+ 
Sbjct: 144 AKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVG--EMDFARLVFDKSSLRDAVSFT 201

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV- 246
           ++I G V  G L +ARRLFDE+P +D VSWN ++ GY ++G    A   F ++   N++ 
Sbjct: 202 ALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLP 261

Query: 247 -------------------------SW-------------STMVWGYSKDGDMEMAKLLF 268
                                    SW             + ++  Y K G+ ++A+ LF
Sbjct: 262 NKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELF 321

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D +  K ++ W  +I GY+   + +EA  L++ M  + +KP+D T + IL ACA  G L 
Sbjct: 322 DGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALD 381

Query: 329 LGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
           LG  VHA I+K  R   N ++  +L+DMYAKCG ++ A  VF  M  ++L SWNAML G 
Sbjct: 382 LGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGF 441

Query: 388 AMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           AMHG  E+AL LFS M ++G F PD  TFVGVL ACT AG +D G QYF SM +DYGI P
Sbjct: 442 AMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISP 501

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           +++HYGCMIDLL R+ + +EA  L+++M +EP+  IWG+LL AC+ H  VE  E V + L
Sbjct: 502 KLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERL 561

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
            +L+  + G + +LSNI+A  G W+ VA +R ++     +K  G +S+E+D +VHEF V 
Sbjct: 562 FQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVG 621

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           D+ HP+   IY+M+N + K L+  G     S
Sbjct: 622 DKFHPECNNIYKMLNEVDKLLEENGFVPNTS 652


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/610 (35%), Positives = 337/610 (55%), Gaps = 57/610 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS---------------LALCRQMGLA 68
           L K K L+   Q+ +++I      +P +  ++I +               L + R  G  
Sbjct: 21  LPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRK 80

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
            +     +  +  L+N +I++        +AF +F  M E GV  D F++  +LKAC+  
Sbjct: 81  HR-----KQDNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRL 135

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
                   IH L+ +     D+F+ N L+  Y +CG +G+  A++LF  M +RD VS+NS
Sbjct: 136 GLIKEGMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGI--ARQLFDRMMKRDSVSFNS 193

Query: 189 MIAGLVKGGELSEARRLFD----------------------------------EMPERDA 214
           MI G VK G +  AR LFD                                  EMP+RD 
Sbjct: 194 MIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL 253

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +SWN+++DG  K G+M  A  LF ++P R++VSW+ MV GY+K G++++A+ LFD MP +
Sbjct: 254 ISWNSMIDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPER 313

Query: 275 TLVPWTIIISGYAEKGMAKEAARLY-DQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
            ++    +++GY + G   EA   + D +    L PD+ TL+  L+A A+ G    G+ +
Sbjct: 314 DVISCNAMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVAL 373

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  I    F  +  +  AL+DMYAKCGS+DNA+SVF  +  K +  WNA++ GLA+HG G
Sbjct: 374 HCYIEDNGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLG 433

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           E A  LF  M+     PD  TF+GVL AC HAG + +G+  F  M R + + P+++HYGC
Sbjct: 434 EVAFELFMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGC 493

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D+LGR+G ++EA + V+ MP+EPN ++W TLL ACR H    + E V   LI +   +
Sbjct: 494 MVDILGRAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYN 553

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
           P +Y +LSNI+A  G WN V  +R+ MK+   +K  G S +E++  VHEF V D+ HP+ 
Sbjct: 554 PSSYVLLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQV 613

Query: 574 EQIYQMINTL 583
            +IY M+++L
Sbjct: 614 REIYSMLDSL 623


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/504 (39%), Positives = 307/504 (60%), Gaps = 34/504 (6%)

Query: 57  SSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF 116
           SS+A+   M  A ++F  I +PD  ++NT+IR   Q+     A  ++  M+   V  D F
Sbjct: 20  SSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKF 79

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T+PF+LKAC    W  +   +H  +++ G+  + FV N+LI  ++ CG + V  A+ LF 
Sbjct: 80  TFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAV--ARALFD 137

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
              +RD+V+W+++ AG  + GEL  AR+LFDEMP +D VSWN ++ GYAK GEM  A +L
Sbjct: 138 GSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKL 197

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
           F+++P R++V+W+ M+                               +GY   G  ++A 
Sbjct: 198 FDEVPKRDVVTWNAMI-------------------------------AGYVLCGSNQQAL 226

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK-CNTNVCNALVDM 355
            ++++M   G  PD+ T++S+L+AC + G L  G ++H  I++  F+  +  + NAL+DM
Sbjct: 227 EMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDM 286

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKCGS+  A+ VF GM +KD+ +WN++L GLA HG  EK++ LF+ M+     PD+ TF
Sbjct: 287 YAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITF 346

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           VGVL AC+HAG +++G QYF  M  +Y I P + HYGCM+DLLGR+G L EA   + +M 
Sbjct: 347 VGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMK 406

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           +EPNAI+W TLLGACR H  VEL       L++++  + G+Y +LSNI+A+ G+W+ V  
Sbjct: 407 IEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEK 466

Query: 536 VRLQMKKTRAQKPSGASSVEVDNE 559
           VR  M  +  +K +G S +E DN+
Sbjct: 467 VRKLMDDSGVRKEAGCSLIEGDNK 490



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 131/303 (43%), Gaps = 47/303 (15%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I+  A   +M  A K+F+++   DV  +N +I   V    N QA  +F +M+  G   D
Sbjct: 181 MITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPD 240

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKK 173
             T   LL AC         Q IH  I + G+    + + N+LID Y+KCG +  +L  +
Sbjct: 241 EVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRAL--E 298

Query: 174 LFMSMGERDIVSWNSMIAGLV-----------------------------------KGGE 198
           +F  M E+D+ +WNS++ GL                                      G 
Sbjct: 299 VFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGR 358

Query: 199 LSEARRLFDEMPERDAVSWNT-----ILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMV 252
           + E R+ FD M +   +  N      ++D   +AG +N AF+  + +    N + W T++
Sbjct: 359 VEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLL 418

Query: 253 WGYSKDGDMEM---AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
                 G++E+   A +   +M       + ++ + YA +G      ++   M+++G++ 
Sbjct: 419 GACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRK 478

Query: 310 DDG 312
           + G
Sbjct: 479 EAG 481


>gi|242050128|ref|XP_002462808.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
 gi|241926185|gb|EER99329.1| hypothetical protein SORBIDRAFT_02g032350 [Sorghum bicolor]
          Length = 638

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/610 (34%), Positives = 333/610 (54%), Gaps = 52/610 (8%)

Query: 24  LHKCKNLNQTKQLFAQII-------KLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L +C+++ +  QL A ++         DL    Y A        LC     A ++F+ I 
Sbjct: 18  LRQCRSIQRLNQLHAHLLVHGSLSAASDLLLASYCALAKAGHGVLCH----ARRLFDGIP 73

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
            PD  +YNT+IRA   +S   +A R+   M  +G+  + FT PF++KAC           
Sbjct: 74  GPDRVMYNTIIRAYCNSSCPREALRLHRGMLRRGILPNEFTLPFVVKACTIAQAREHALA 133

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H +  + G  G +FV N+L+ SY+  G +G S  ++ F  M +R++VSWNSMI G  + 
Sbjct: 134 VHGVALRLGLVGQVFVGNALLHSYASAGSLGDS--RRFFDEMVDRNVVSWNSMIGGYAQA 191

Query: 197 GELSEARRLFDEMPER---------------------------------------DAVSW 217
           G+  E   LF EM  +                                       D +  
Sbjct: 192 GDTREVCSLFGEMRRQGFLEDEFTLVSLLIACSQEGNLEIGRLVHCRMLVSGSRVDLILE 251

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           + ++D Y K G++ +A   FE +P +++VSW++M+   +K G +  A+  FD MP + +V
Sbjct: 252 SALVDMYGKCGDLWMARRCFEMMPIKSVVSWTSMLCAQTKHGSVNAARCWFDHMPERNIV 311

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  +IS Y ++G   EA  LY+QM+  GL PD+ TL+++L+A    G L +G  VH  I
Sbjct: 312 SWNAMISCYVQRGQCHEALDLYNQMQSQGLAPDEITLVAVLSASGRIGDLTVGKMVHLYI 371

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
               +  + ++ N+L+DMYAKCG +D A+S+F+ M  +++VSWN ++ GLAMHG+    +
Sbjct: 372 RDNIYNPDVSLVNSLLDMYAKCGQVDTAISLFSEMCNRNVVSWNVIIGGLAMHGRALDTI 431

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
             F  M  + F PD  TFV +L AC+H G ++ G  YF SM   Y +  +VEHY CM+DL
Sbjct: 432 TFFRSMVTDSFAPDGITFVALLSACSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDL 491

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR G L++A+ L++ MP++P+ ++WG LLGACR H  V++  +V+  L+ L+G   G +
Sbjct: 492 LGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGRQVIKQLLELEGISGGLF 551

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            ++SN+   T  W  +  +R  MK+   +K  G SS+E++N +HEF V D  H +S +IY
Sbjct: 552 VLISNLLYETHQWEDMKRLRKLMKEWGTRKDMGVSSIEINNSIHEFGVEDIRHERSSEIY 611

Query: 578 QMINTLGKDL 587
            +++ L   L
Sbjct: 612 AVVDQLSYHL 621


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 336/588 (57%), Gaps = 29/588 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            N  + LF Q+     +RD +    +++      ++G A ++F+ + + DV  +N+L+  
Sbjct: 96  FNLARNLFDQMP----ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSG 151

Query: 90  CVQNSLNAQAFRVFLDMQEK------GVFTDNFTYPFLLKAC---NGKNWFHLVQ---MI 137
             QN    +A  VF +M EK      G+         + +AC     K+ + L+    ++
Sbjct: 152 YAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLM 211

Query: 138 HALIYKCGY-----------FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
              + K                D    N++I  Y++ G  G+S A++LF     RD+ +W
Sbjct: 212 GGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG--GLSQARRLFDESPTRDVFTW 269

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
            +M++G V+ G L EA+  FDEMPE++ VS+N ++ GY +  +M++A ELFE +P RNI 
Sbjct: 270 TAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNIS 329

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           SW+TM+ GY + GD+  A+  FD MP +  V W  II+GYA+ G  +EA  ++ ++++ G
Sbjct: 330 SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
              +  T    L+ CA+   L LG ++H    K  +     V NAL+ MY KCGS+D A 
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAN 449

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
             F G+ +KD+VSWN ML G A HG G +AL +F  MK  G  PD+ T VGVL AC+H G
Sbjct: 450 DTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +D+G +YFYSM +DYG++P  +HY CMIDLLGR+GRL+EA  L+++MP +P A  WG L
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGAL 569

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGA R H   EL E+  + + +++  + G Y +LSN++AA+G W     +R +M+    Q
Sbjct: 570 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQ 629

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           K  G S VEV N++H FSV D  HP+ E+IY  +  L   ++  G+ +
Sbjct: 630 KVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVS 677



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 198/438 (45%), Gaps = 79/438 (18%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N++I  Y +      +LA+ LF  M ERD+ SWN M+ G V+   L +ARRLFD MPE+D
Sbjct: 84  NAMISGYLRNS--KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKD 141

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM---------- 263
            VSWN++L GYA+ G ++ A E+F+ +P +N +SW+ ++  Y  +G +E           
Sbjct: 142 VVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD 201

Query: 264 ---------------------AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
                                A+ LFD+MP +  + W  +ISGYA+ G   +A RL+D+ 
Sbjct: 202 WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDES 261

Query: 303 EEAGLKPDDGTLISILAACAESGLL-----------------------GLGMKVHASINK 339
                  D  T  ++++   ++G+L                       G        I +
Sbjct: 262 P----TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR 317

Query: 340 YRFKC----NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
             F+     N +  N ++  Y + G +  A   F+ M ++D VSW A++ G A  G  E+
Sbjct: 318 ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE 377

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCM 454
           AL +F  +K +G   ++ TF   L  C     ++ G Q +  +++  YG        GC 
Sbjct: 378 ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-------GCF 430

Query: 455 ID-----LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           +      +  + G + EA    + +  E + + W T+L    +H     A  V + + + 
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESM-KT 488

Query: 510 KGSDPGNYTMLSNIFAAT 527
            G  P   TM+  + A +
Sbjct: 489 AGVKPDEITMVGVLSACS 506



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 182/394 (46%), Gaps = 54/394 (13%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DI   N  I ++ + G    +L   +F +M  R  VS+N+MI+G ++  + + AR LFD+
Sbjct: 48  DILKWNKAISTHMRNGHCDSAL--HVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MPERD  SWN +L GY +   +  A  LF+ +P +++VSW++++ GY+++G ++ A+ +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D MP K  + W  +++ Y   G  +EA  L++          D  LIS            
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFES-------KSDWDLIS------------ 206

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
                                N L+  + +   L +A  +F+ M  +D +SWN M+ G A
Sbjct: 207 --------------------WNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYA 246

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
             G   +A  LF    DE    D +T+  ++      G +D+   +F  M     +    
Sbjct: 247 QGGGLSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV---- 298

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
             Y  MI    ++ ++  A  L +SMP   N   W T++    +   +  A +  D + +
Sbjct: 299 -SYNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKFFDMMPQ 356

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
               D  ++  +   +A +G + +  N+ +++K+
Sbjct: 357 ---RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQ 387



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 72/173 (41%), Gaps = 39/173 (22%)

Query: 405 DEGF-GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           +EGF     Y     L    + G +D G +YFY M  +Y + P  +HY CMIDLLGR  R
Sbjct: 756 NEGFCSCGDYWLQFFLLVVIYTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDR 815

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L+E                 G LLGA R H   EL E+      ++   + G    +S  
Sbjct: 816 LEE-----------------GALLGASRIHGNTELGEKAAQMFFKMGPQNSG----IS-- 852

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
                          +M+    QK  G S  EV N++H FSV   L  + E I
Sbjct: 853 ---------------KMRDVGVQKVPGYSWFEVQNKIHTFSVGLFLSRERENI 890



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 49/266 (18%)

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           ++   +I+ W+  +  + ++G  + A  +F+ MP ++ V +  +ISGY        A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +DQM E  L                                          N ++  Y +
Sbjct: 103 FDQMPERDLFS---------------------------------------WNVMLTGYVR 123

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
              L +A  +F+ M +KD+VSWN++L G A +G  ++A  +F  M ++    +  ++ G+
Sbjct: 124 NCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGL 179

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L A  H G I++    F S + D+ ++     + C++    R  +L +A  L   MPV  
Sbjct: 180 LAAYVHNGRIEEACLLFES-KSDWDLIS----WNCLMGGFVRKKKLGDARWLFDKMPVR- 233

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLD 504
           +AI W T++    +   +  A  + D
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFD 259


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 336/588 (57%), Gaps = 29/588 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            N  + LF Q+     +RD +    +++      ++G A ++F+ + + DV  +N+L+  
Sbjct: 96  FNLARNLFDQMP----ERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSG 151

Query: 90  CVQNSLNAQAFRVFLDMQEK------GVFTDNFTYPFLLKAC---NGKNWFHLVQ---MI 137
             QN    +A  VF +M EK      G+         + +AC     K+ + L+    ++
Sbjct: 152 YAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLM 211

Query: 138 HALIYKCGY-----------FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
              + K                D    N++I  Y++ G  G+S A++LF     RD+ +W
Sbjct: 212 GGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGG--GLSQARRLFDESPTRDVFTW 269

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
            +M++G V+ G L EA+  FDEMPE++ VS+N ++ GY +  +M++A ELFE +P RNI 
Sbjct: 270 TAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIARELFESMPCRNIS 329

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           SW+TM+ GY + GD+  A+  FD MP +  V W  II+GYA+ G  +EA  ++ ++++ G
Sbjct: 330 SWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
              +  T    L+ CA+   L LG ++H    K  +     V NAL+ MY KCGS+D A 
Sbjct: 390 ESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEAN 449

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
             F G+ +KD+VSWN ML G A HG G +AL +F  MK  G  PD+ T VGVL AC+H G
Sbjct: 450 DTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTG 509

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +D+G +YFYSM +DYG++P  +HY CMIDLLGR+GRL+EA  L+++MP +P A  WG L
Sbjct: 510 LLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGAL 569

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGA R H   EL E+  + + +++  + G Y +LSN++AA+G W     +R +M+    Q
Sbjct: 570 LGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQ 629

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           K  G S VEV N++H FSV D  HP+ E+IY  +  L   ++  G+ +
Sbjct: 630 KVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVS 677



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 117/438 (26%), Positives = 198/438 (45%), Gaps = 79/438 (18%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N++I  Y +      +LA+ LF  M ERD+ SWN M+ G V+   L +ARRLFD MPE+D
Sbjct: 84  NAMISGYLRNS--KFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKD 141

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM---------- 263
            VSWN++L GYA+ G ++ A E+F+ +P +N +SW+ ++  Y  +G +E           
Sbjct: 142 VVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD 201

Query: 264 ---------------------AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
                                A+ LFD+MP +  + W  +ISGYA+ G   +A RL+D+ 
Sbjct: 202 WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDES 261

Query: 303 EEAGLKPDDGTLISILAACAESGLL-----------------------GLGMKVHASINK 339
                  D  T  ++++   ++G+L                       G        I +
Sbjct: 262 P----TRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEVSYNAMIAGYVQTKKMDIAR 317

Query: 340 YRFKC----NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
             F+     N +  N ++  Y + G +  A   F+ M ++D VSW A++ G A  G  E+
Sbjct: 318 ELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEE 377

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCM 454
           AL +F  +K +G   ++ TF   L  C     ++ G Q +  +++  YG        GC 
Sbjct: 378 ALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGT-------GCF 430

Query: 455 ID-----LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           +      +  + G + EA    + +  E + + W T+L    +H     A  V + + + 
Sbjct: 431 VGNALLAMYFKCGSIDEANDTFEGIE-EKDVVSWNTMLAGYARHGFGRQALTVFESM-KT 488

Query: 510 KGSDPGNYTMLSNIFAAT 527
            G  P   TM+  + A +
Sbjct: 489 AGVKPDEITMVGVLSACS 506



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 182/394 (46%), Gaps = 54/394 (13%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DI   N  I ++ + G    +L   +F +M  R  VS+N+MI+G ++  + + AR LFD+
Sbjct: 48  DILKWNKAISTHMRNGHCDSAL--HVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MPERD  SWN +L GY +   +  A  LF+ +P +++VSW++++ GY+++G ++ A+ +F
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVF 165

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D MP K  + W  +++ Y   G  +EA  L++          D  LIS            
Sbjct: 166 DNMPEKNSISWNGLLAAYVHNGRIEEACLLFES-------KSDWDLIS------------ 206

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
                                N L+  + +   L +A  +F+ M  +D +SWN M+ G A
Sbjct: 207 --------------------WNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYA 246

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
             G   +A  LF    DE    D +T+  ++      G +D+   +F  M     +    
Sbjct: 247 QGGGLSQARRLF----DESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNEV---- 298

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
             Y  MI    ++ ++  A  L +SMP   N   W T++    +   +  A +  D + +
Sbjct: 299 -SYNAMIAGYVQTKKMDIARELFESMPCR-NISSWNTMITGYGQIGDIAQARKFFDMMPQ 356

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
               D  ++  +   +A +G + +  N+ +++K+
Sbjct: 357 ---RDCVSWAAIIAGYAQSGHYEEALNMFVEIKQ 387



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 115/266 (43%), Gaps = 49/266 (18%)

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           ++   +I+ W+  +  + ++G  + A  +F+ MP ++ V +  +ISGY        A  L
Sbjct: 43  RVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNL 102

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +DQM E  L                                          N ++  Y +
Sbjct: 103 FDQMPERDLFS---------------------------------------WNVMLTGYVR 123

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
              L +A  +F+ M +KD+VSWN++L G A +G  ++A  +F  M ++    +  ++ G+
Sbjct: 124 NCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEK----NSISWNGL 179

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L A  H G I++    F S + D+ ++     + C++    R  +L +A  L   MPV  
Sbjct: 180 LAAYVHNGRIEEACLLFES-KSDWDLIS----WNCLMGGFVRKKKLGDARWLFDKMPVR- 233

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLD 504
           +AI W T++    +   +  A  + D
Sbjct: 234 DAISWNTMISGYAQGGGLSQARRLFD 259


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 322/577 (55%), Gaps = 43/577 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-----GLAIKVFNDI 75
           L  L  CK++   KQ+ A IIK     D  +      S ALC Q        A+ +   +
Sbjct: 41  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLS-ALCAQSLPIDPRYALSLLAQL 99

Query: 76  QDPDVHLYNTLIRA-CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + P++ LYN +IR     N+ + +   V+  M  KG+  DN+T PF+LKAC         
Sbjct: 100 RTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREG 159

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +H    K G   D++V N+L+  Y+ C V+                            
Sbjct: 160 EEVHGQAIKMGLASDVYVSNTLMRMYAVCDVI---------------------------- 191

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF---EKIPHRNIVSWSTM 251
                  AR++FD  P+RD VSW T++ GY K G       L+       + ++   + +
Sbjct: 192 -----RSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVGLYIIRNSNVNLDVFVGNAL 246

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y K GD   A+ +F  MP K +V W  +ISG A+KG  KE+  ++ +M+  G+KPDD
Sbjct: 247 VDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPDD 306

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL+++L +CA  G+L LG  VHA +++ + + +  + NALVDMYAKCGS+D A  VF  
Sbjct: 307 VTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSIDQACWVFQA 366

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M +KD+ S+ AM+ GLAMHGQG KAL LFS M   G  PD+ TFVGVL AC+H G +++G
Sbjct: 367 MNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEG 426

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
            +YF  M   Y + PQ+EHYGCM+DLLGR+G + EA   +++MP+EP+A + G LLGAC+
Sbjct: 427 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVLGALLGACK 486

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  VEL E V+  + +++    G Y ++SNI+++   W     +R  MK+   +K  G 
Sbjct: 487 IHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKERNLEKTPGC 546

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           SS+E+D  +HEF   D+ HPK ++IY++++ +   LK
Sbjct: 547 SSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 583


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/616 (33%), Positives = 344/616 (55%), Gaps = 45/616 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L  C++++Q +Q+  Q IK  L  +P +  ++++      + G    A ++F++I +P++
Sbjct: 25  LETCESMDQLQQVHCQAIKKGLNANPVLQNRVMT-FCCTHEYGDFQYARRLFDEIPEPNL 83

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            ++NT+IR   +         ++L+M  +GV  D +T+PFL K           + +H  
Sbjct: 84  FIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGH 143

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G   ++FV  +L+  Y  CG   +  A+ +F    + D+++WN +I+   K G+  
Sbjct: 144 VLKHGLQYNVFVHTALVQMYLLCG--QLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 201

Query: 201 EARRLFDEMP---------------------------------------ERDAVSWNTIL 221
           E+RRLF  M                                        E + V  N ++
Sbjct: 202 ESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMI 261

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           D YA  GEM+ A  +F  + +R+I+SW+T+V G++  G++++A+  FD+MP K  V WT 
Sbjct: 262 DMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTA 321

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GY      KEA  L+  M+   +KPD+ T++S+L ACA  G L LG  +   I++ +
Sbjct: 322 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 381

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            K +  V NAL+DMY KCG +D A S+F  M+++D  +W AM+ GLA++G GEKAL +FS
Sbjct: 382 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 441

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M      PD+ T++GVL ACTH G +DKG +YF  M   +GI P + HYGC++DLL R+
Sbjct: 442 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 501

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           GRLKEA  ++++MP++ N+I+WG LL  CR +   ++AE V+  ++ L+  +   Y +L 
Sbjct: 502 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLC 561

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+AA   WN +  +R  M     +K  G S +E++  VHEF   D+ HP+++ I   ++
Sbjct: 562 NIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLD 621

Query: 582 TLGKDLKPVGHAAKLS 597
            + +DLK  G++  +S
Sbjct: 622 KMTQDLKLAGYSPDIS 637


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/616 (33%), Positives = 344/616 (55%), Gaps = 45/616 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L  C++++Q +Q+  Q IK  L  +P +  ++++      + G    A ++F++I +P++
Sbjct: 46  LETCESMDQLQQVHCQAIKKGLNANPVLQNRVMT-FCCTHEYGDFQYARRLFDEIPEPNL 104

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            ++NT+IR   +         ++L+M  +GV  D +T+PFL K           + +H  
Sbjct: 105 FIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGH 164

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G   ++FV  +L+  Y  CG   +  A+ +F    + D+++WN +I+   K G+  
Sbjct: 165 VLKHGLQYNVFVHTALVQMYLLCG--QLDTARGVFDVCPKADVITWNMIISAYNKVGKFE 222

Query: 201 EARRLFDEMP---------------------------------------ERDAVSWNTIL 221
           E+RRLF  M                                        E + V  N ++
Sbjct: 223 ESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMI 282

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           D YA  GEM+ A  +F  + +R+I+SW+T+V G++  G++++A+  FD+MP K  V WT 
Sbjct: 283 DMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTA 342

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GY      KEA  L+  M+   +KPD+ T++S+L ACA  G L LG  +   I++ +
Sbjct: 343 MIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNK 402

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            K +  V NAL+DMY KCG +D A S+F  M+++D  +W AM+ GLA++G GEKAL +FS
Sbjct: 403 IKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFS 462

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M      PD+ T++GVL ACTH G +DKG +YF  M   +GI P + HYGC++DLL R+
Sbjct: 463 NMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARA 522

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           GRLKEA  ++++MP++ N+I+WG LL  CR +   ++AE V+  ++ L+  +   Y +L 
Sbjct: 523 GRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLC 582

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+AA   WN +  +R  M     +K  G S +E++  VHEF   D+ HP+++ I   ++
Sbjct: 583 NIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLD 642

Query: 582 TLGKDLKPVGHAAKLS 597
            + +DLK  G++  +S
Sbjct: 643 KMTQDLKLAGYSPDIS 658


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/575 (37%), Positives = 329/575 (57%), Gaps = 25/575 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      +I      R +G A ++F  + + DV  +NT++    QN     A RVF  
Sbjct: 118 ERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDR 177

Query: 106 MQEKGVFTDN------FTYPFLLKAC----NGKNWFHLV------------QMIHAL-IY 142
           M EK   + N           L +AC    + +NW  +             +++ A   +
Sbjct: 178 MPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFF 237

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                 D+   N++I  Y++ G   +  A++LF      D+ +W +M++G ++   + EA
Sbjct: 238 DSMKVRDVVSWNTIITGYAQNG--EIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEA 295

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R LFD MPER+ VSWN +L GY +   + +A ELF+ +P RN+ +W+TM+ GY++ G + 
Sbjct: 296 RELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKIS 355

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            AK LFD+MP +  V W  +I+GY++ G + EA RL+  ME  G + +  +  S L+ CA
Sbjct: 356 EAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCA 415

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           +   L LG ++H  + K  ++    V NAL+ MY KCGS++ A  +F  M  KD+VSWN 
Sbjct: 416 DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNT 475

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G + HG GE+AL  F  MK EG  PD  T V VL AC+H G +DKG QYF++M +DY
Sbjct: 476 MIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDY 535

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G+ P  +HY CM+DLLGR+G L+EA  L+++MP EP+A IWGTLLGA R H   ELAE  
Sbjct: 536 GVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETA 595

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D +  ++  + G Y +LSN++A++G W  V  +R++M+    +K  G S +E+ N+ H 
Sbjct: 596 ADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHT 655

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           FSV D+ HP+ ++I+  +  L   +K  G+ +K S
Sbjct: 656 FSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTS 690



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 170/348 (48%), Gaps = 34/348 (9%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DI   N  I SY + G    +L  ++F  M     VS+N+MI+G ++ GE   AR LFDE
Sbjct: 58  DIKEWNVAISSYMRTGRCSEAL--RVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDE 115

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MPERD VSWN ++ GY +   +  A ELFE++P R++ SW+T++ GY+++G ++ A+ +F
Sbjct: 116 MPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVF 175

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           DRMP K  V W  ++S Y +    +EA  L+   E   L              + + LLG
Sbjct: 176 DRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWAL-------------VSWNCLLG 222

Query: 329 LGMKVHASINKYRFKCNTNV-----CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
             +K    +   +F  +  V      N ++  YA+ G +D A  +F+     D+ +W AM
Sbjct: 223 GFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAM 282

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G   +   E+A  LF RM +     ++ ++  +L        ++   + F        
Sbjct: 283 VSGYIQNRMVEEARELFDRMPER----NEVSWNAMLAGYVQGERVEMAKELF-------D 331

Query: 444 ILP--QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           ++P   V  +  MI    + G++ EA  L   MP + + + W  ++  
Sbjct: 332 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAG 378



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 193/396 (48%), Gaps = 23/396 (5%)

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE 238
           G+ DI  WN  I+  ++ G  SEA R+F  MP   +VS+N ++ GY + GE  LA  LF+
Sbjct: 55  GDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFD 114

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           ++P R++VSW+ M+ GY ++ ++  A+ LF+RMP + +  W  I+SGYA+ G   +A R+
Sbjct: 115 EMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRV 174

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +D+M E     +D +  ++L+A  ++  L     +  S   +         N L+  + K
Sbjct: 175 FDRMPE----KNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVS----WNCLLGGFVK 226

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
              +  A   F+ M  +D+VSWN ++ G A +G+ ++A  LF    DE    D +T+  +
Sbjct: 227 KKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLF----DESPVHDVFTWTAM 282

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           +        +++  + F  M     +      +  M+    +  R++ A  L   MP   
Sbjct: 283 VSGYIQNRMVEEARELFDRMPERNEV-----SWNAMLAGYVQGERVEMAKELFDVMPCR- 336

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           N   W T++    +   +  A+ + D   ++   DP ++  +   ++ +G   +   + +
Sbjct: 337 NVSTWNTMITGYAQCGKISEAKNLFD---KMPKRDPVSWAAMIAGYSQSGHSYEALRLFV 393

Query: 539 QMKKT--RAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
            M++   R  + S +S++    +V    +  QLH +
Sbjct: 394 LMEREGGRLNRSSFSSALSTCADVVALELGKQLHGR 429


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/611 (36%), Positives = 334/611 (54%), Gaps = 49/611 (8%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQM-GL--AIKVFNDIQDPDVHLYNTLIRACVQNS 94
           AQ++K  L    Y   KL+    +     GL  A+ VF   Q+P++ ++NT++R    +S
Sbjct: 3   AQMVKTGLHNTNYALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSS 62

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
                  +++ M   G   + +T+PFLLK+C     F   + IHA + K G   D +   
Sbjct: 63  DLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHT 122

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           SLI  Y++ G   +  A+K+F    +RD+VS  ++I G    G++  AR++FD + ERD 
Sbjct: 123 SLISMYARNG--RLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------VSW------------------- 248
           VSWN ++ GY +      A ELF+++   N+       VS                    
Sbjct: 181 VSWNAMITGYVENCGYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTL 240

Query: 249 --------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
                         +  +  YSK GD+E+A  LF+ +  K +V W  +I GY    + KE
Sbjct: 241 VDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN---VCNA 351
           A  L+ +M  +G  P+D T++S+L ACA  G + +G  +H  I+K R K  TN   +  +
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYIDK-RLKGVTNGSALRTS 359

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+DMYAKCG ++ A  VFN M  K L SWNAM++G AMHG+   A  LFSRM+  G  PD
Sbjct: 360 LIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPD 419

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             T VG+L AC+H+G +D G   F S+ +DY I P++EHYGCMIDLLG +G  KEA  ++
Sbjct: 420 DITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEII 479

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
             MP+EP+ +IW +LL AC+ H  +ELAE     L+ ++  + G+Y +LSNI+A  G W 
Sbjct: 480 HMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWE 539

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            VA +R  +     +K  G SS+E+D+ VHEF + D+LHP+S +IY+M+  +   L+  G
Sbjct: 540 DVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAG 599

Query: 592 HAAKLSAEIGE 602
                S  + E
Sbjct: 600 FVPDTSEVLQE 610


>gi|357154550|ref|XP_003576820.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 657

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/612 (33%), Positives = 334/612 (54%), Gaps = 47/612 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC----RQMGL--AIKVFND 74
           L+ L +C+++    Q+ A ++         +A +LI+S        R  GL  A ++F+ 
Sbjct: 14  LELLRQCRSIQHLDQIHAHLVVHGFSDVSSVASQLIASYCTLSAGDRDGGLCHARRLFDR 73

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           I +PD  +YNTL+RA   +    +A R+   + ++G+  + FT PF+LKAC         
Sbjct: 74  IPEPDRFMYNTLVRAYSNSDCPQEALRLHRGVLQRGILPNEFTLPFVLKACTTVRAVEHA 133

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
              H ++ K G+   IFV N+L+  ++  G +  S  ++ F  M +R++VSWN+MI G  
Sbjct: 134 LAAHGVVVKLGFVQQIFVANALLHFHASAGSLRDS--RRFFGEMADRNVVSWNTMIGGYA 191

Query: 195 KGGELSEARRLFDEMPER---------------------------------------DAV 215
           + GE+SEA  LF EM  +                                       D +
Sbjct: 192 QAGEVSEACALFGEMRHQGLLADVFTLVSLLFACSSEGNLEVGRLVHCHMLVSGSRVDRI 251

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
             N +LD Y K G++ +A   F+ +P +N+V+W++M+   +K G ++  +  F++MP + 
Sbjct: 252 LGNALLDMYGKCGDLWMAHRCFDMMPIKNVVTWTSMLCAQAKHGSVDAVRDWFEQMPERN 311

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V W  +IS Y + G   E   LY++M   G+ PD+ TL  +L+AC ++G L  G  +H 
Sbjct: 312 IVSWNAMISCYVQCGRLHETLDLYNRMRSLGITPDEFTLAGVLSACGQNGDLASGKMIHC 371

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            +          + N+L+DMYA+CG +D A+ +F  M  K+++SWN ++  LAMHG+ ++
Sbjct: 372 YVRDNFNDPGVTLLNSLLDMYARCGQVDTAIGLFTEMPNKNVISWNVIIGALAMHGRAQE 431

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
            +  F  M  + F PD+ TFVG+L AC+H G ++ G  YF +M R Y + P+VEHYGCM+
Sbjct: 432 TVTFFRTMVSDAFSPDEITFVGLLSACSHGGLLEAGEYYFEAMARVYNVEPEVEHYGCMV 491

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLGR G L +A+ L++ M ++P+ ++WG LLGACR H  VE+ + V+  L+ L+G   G
Sbjct: 492 DLLGRRGHLAKAVNLIKDMSIKPDVVVWGALLGACRIHGNVEIGKLVIKQLLELEGITGG 551

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
            + ++ N+F  T  W  +  +R  MK+   +K  G SS+EV N +HEF V D  H  + +
Sbjct: 552 LFVLICNLFYETNQWEDMKKLRKLMKEQGTKKDMGVSSIEVKNIIHEFGVEDLRHESTNE 611

Query: 576 IYQMINTLGKDL 587
           IY  ++ L   L
Sbjct: 612 IYAAVDQLSYHL 623


>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Vitis vinifera]
          Length = 635

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 335/570 (58%), Gaps = 47/570 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  + + ++LF ++   D +++      ++       ++  A K+FN++ + +V  +NT
Sbjct: 95  KCGMIEEARRLFDRV---DAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNT 151

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN     A  +F  M E+ V +                W               
Sbjct: 152 MIDGYAQNGRIDSAMYLFEKMPERNVVS----------------W--------------- 180

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                   N+++   ++CG   +  A++LF  M ERD++SW +MIAGL K G + EAR L
Sbjct: 181 --------NTVMSMLAQCG--RIEEARRLFDRMPERDVISWTAMIAGLSKNGRIDEARLL 230

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD MPER+ VSWN ++ GYA+   ++ A +LFE++P R++ SW+TM+ G  ++GD+  A+
Sbjct: 231 FDRMPERNVVSWNAMITGYAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRAR 290

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAES 324
            LF+ MP K ++ WT +I+G  ++G ++EA +++ +M    G KP+ GT +S+L AC+  
Sbjct: 291 KLFNEMPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNL 350

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-GMT-KKDLVSWNA 382
             LG G +VH  I+K  ++ +T V +AL++MY+KCG L  A  +F+ GMT ++DLVSWN 
Sbjct: 351 AGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNG 410

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++   A HG G++A+  F  M+  GF PD  T+VG+L AC+HAG +++G++YF  + +D 
Sbjct: 411 IIAAYAHHGYGKEAINFFKEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDR 470

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            IL + +HY C++DL GR+GRLKEA   ++ +  +P+A +WG LL  C  H  V++ ++ 
Sbjct: 471 SILVREDHYACLVDLCGRAGRLKEAFGFIERLETKPSARVWGALLAGCNVHANVKIGKQA 530

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ ++  + G Y +LSNI+A+TG W + A VRL+MK    +K  G S +EV N VH 
Sbjct: 531 AKKLLEVEPENAGTYLLLSNIYASTGKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHV 590

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F V D+ H +S+ IY ++  L   +K  G+
Sbjct: 591 FVVGDKSHSQSKLIYSLLRDLHSKMKKAGY 620


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/575 (38%), Positives = 333/575 (57%), Gaps = 12/575 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRD-PYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNT 85
           K L   K    ++++L+L  D   ++  L S++         I VF+    + +  LYNT
Sbjct: 15  KCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTFLYNT 74

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +IR  V       A  ++  M +  +  D+FT+ F+LKAC   N FHL  MIH+L++K G
Sbjct: 75  MIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTG 134

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D+FV  +++  YSKCG +    A K+F  M  +++VSW  MI G ++ G+  EA  L
Sbjct: 135 FDCDVFVKTNVVCFYSKCGFL--RDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDL 192

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMVWGYSK 257
           F  + E     D      +L   A+ G++     +   + E    RN+   +++V  Y+K
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTK 252

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ME A+ +FD M  K +V W+ +I GYA  G+ +EA  L+ +M +  ++PD   ++  
Sbjct: 253 CGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L++CA  G L LG      +N   F  N  +  +L+D YAKCGS++ A+ V+  M +KD 
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V +NA++ GLAM+GQ   A G+F +M   G  P+++TFVG+LC CTHAG +D G  YF S
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M  D+ + P +EHYGCM+DLL R+G L EA  L++ MP++ N I+WG+LLG CR H   +
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           LAE VL  LI L+  + G+Y +LSNI++A+  W++   +R  + +   QK  G S VEVD
Sbjct: 493 LAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             VHEF V D  HP S++IY+ + +L KDLK  G+
Sbjct: 553 GVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGY 587


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/538 (38%), Positives = 306/538 (56%), Gaps = 36/538 (6%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL---CRQMGLAIKVFNDIQDPDVHLYNT 85
           ++++  Q  A I+K  L    + A +LI+S++     + +  A  +F+ I +P+ +++NT
Sbjct: 19  SISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNT 78

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +IRA   +     A  +F  M    V  D +T+ F LK+C   +     + IH  + K G
Sbjct: 79  IIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTG 138

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D+F+ N+LI  Y+ CG +                                  +AR L
Sbjct: 139 LGDDLFIQNTLIHLYASCGCI---------------------------------EDARHL 165

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
            D M ERD VSWN +L  YA+ G M LA  LF+++  RN+ SW+ M+ GY   G +E A+
Sbjct: 166 LDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEAR 225

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F   P K +V W  +I+GY+  G   E   L++ M+ AG+KPD+ TL+S+L+ACA  G
Sbjct: 226 RVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVG 285

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G  VHA I+K     +  V  ALVDMY+KCGS++ A+ VFN   +KD+ +WN+++ 
Sbjct: 286 ALSQGEWVHAYIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIIS 345

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           GL+ HG G+ AL +FS M  EGF P++ TFV VL AC+ AG +D+G + F  M   +GI 
Sbjct: 346 GLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQ 405

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P +EHYGCM+DLLGR G L+EA  LVQ MP +  +++W +LLGACR H  VELAE V   
Sbjct: 406 PTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQK 465

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           L+ L   +  ++  LSN++A+ G W  V  VR +M+    +K  G S +EVD  V+EF
Sbjct: 466 LLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEF 523


>gi|212723118|ref|NP_001131685.1| hypothetical protein [Zea mays]
 gi|194692242|gb|ACF80205.1| unknown [Zea mays]
 gi|414879040|tpg|DAA56171.1| TPA: hypothetical protein ZEAMMB73_730680 [Zea mays]
          Length = 590

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/557 (38%), Positives = 324/557 (58%), Gaps = 13/557 (2%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKL-DLQRDPY-IAPKLISSLA-LCRQMGLAIKVFN 73
           L   L  L  C++ +   Q  A ++    L   P  ++  L+ +LA +     LA  VF 
Sbjct: 10  LPTLLSRLRACRSASHALQCHALLLTSGHLAASPLRLSNHLLLALASVPSAAALADVVFA 69

Query: 74  DIQDP---DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
            +  P   D   +NT IR        A A   F  M+  GV  D +T+P +LKAC     
Sbjct: 70  RLPLPAARDPFAWNTAIRLHAPARPRA-ALLYFARMRRCGVRPDAYTFPAVLKACGCAPG 128

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNS 188
                ++HA   + G   D+F  N+LI  Y  C ++ +   +K+F   G   RD+VSWNS
Sbjct: 129 CRAGLLVHAEAVRRGLAADLFTVNALISFY--CRILDIRSGRKVFDEAGGVSRDLVSWNS 186

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE--MNLAFELFEKIPHRNIV 246
           M+AG V  GE+  A+ +FDEMP++D  SW T++DGY K G   ++ A ELF+++P R++V
Sbjct: 187 MVAGYVGCGEMGLAQEMFDEMPQKDTFSWATLIDGYGKQGGAGVDRARELFDQMPERDLV 246

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
            W++M+ GY++ G M+ A+ LF+ MP + ++ W+I+I G+   G AKEA   +  M   G
Sbjct: 247 CWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVSCGEAKEALEYFQSMLRCG 306

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           L+PD    +  ++ACA+ G L  G  +H+ + K +   +  V  AL+DMY KCG LD AM
Sbjct: 307 LRPDRIAAVGAVSACAQLGALEQGRWLHSYLEKKKLLSDVVVQTALIDMYVKCGCLDLAM 366

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            +F  M ++ +V+WN M+ GL  HG G  A+ LF RM+ E    D  + +G+L ACTHAG
Sbjct: 367 LIFESMAERSVVTWNVMIVGLGTHGFGLDAVTLFHRMEAESVAVDDLSVLGMLTACTHAG 426

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            + +G++ F+ M++D+GI P+VEHYG ++DLLGR+GRL +A   +++MP+EP   +WG+L
Sbjct: 427 LVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPTPELWGSL 486

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           L ACR H+ VELAE  ++ L  L   D G Y +LSNI+A  G W  V  +R  M     +
Sbjct: 487 LAACRSHSCVELAELSVERLADLGADDSGVYVLLSNIYADEGMWGDVLRIRKLMSDEGMR 546

Query: 547 KPSGASSVEVDNEVHEF 563
           K  G S +EVD E+HEF
Sbjct: 547 KDIGRSVIEVDGEIHEF 563


>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
           [Vitis vinifera]
 gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/512 (39%), Positives = 325/512 (63%), Gaps = 5/512 (0%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMI 137
           D  L N++I+A V     +++F ++ D++    FT D+FT+  L K+C         Q I
Sbjct: 51  DAFLCNSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEI 110

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H+ +   G+  D++   +L+D Y+K G   +  A+KLF  M +R  VSW ++I G V+ G
Sbjct: 111 HSHVVAVGFCLDLYAATALVDMYAKFG--KMDCARKLFDEMIDRSQVSWTALIGGYVRSG 168

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
           ++  A +LFD+M E+D+ ++NT++D Y K G+M  A +LF+++P R++VSW+ M++GYS 
Sbjct: 169 DMDNAGKLFDQMIEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSS 228

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE-AGLKPDDGTLIS 316
           +G+++ A+ LFD MP K L  W  +ISGY +     EA +L+ +M+    L+PD+ T++S
Sbjct: 229 NGNLDSARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVS 288

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L A A+ G L LG  VH  + + +    TNV  AL+DMYAKCG +  +  VF+ M +K+
Sbjct: 289 VLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKE 348

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
             SWNA++   A++G+ ++ALGLF  M  +GF P++ T +GVL AC H+G +++G ++F 
Sbjct: 349 TASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFK 408

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           +ME ++G+ P++EHYGCM+DLLGR+G L+EA +L++SMP E N II  + L AC     V
Sbjct: 409 AME-EFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIILSSFLFACGYSKDV 467

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
             AE VL   I+++  + GNY ML N++A    W +   V+  M++   +K +G S++EV
Sbjct: 468 ARAERVLKEAIKMEAWNDGNYIMLRNLYANEKRWKEADEVKGLMRRNGVKKEAGCSAIEV 527

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           D+ V EF   D++HPK E I+ ++  L   +K
Sbjct: 528 DSRVWEFVAGDRVHPKWEAIHSVLGQLWVHMK 559



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 56/357 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K   ++  ++LF ++I     R       LI        M  A K+F+ + + D   +NT
Sbjct: 135 KFGKMDCARKLFDEMI----DRSQVSWTALIGGYVRSGDMDNAGKLFDQMIEKDSAAFNT 190

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I A V+      A ++F +M E+ V +                W         +IY  G
Sbjct: 191 MIDAYVKLGDMCSARKLFDEMPERSVVS----------------W-------TIMIY--G 225

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           Y       N  +DS           A+ LF +M E+++ SWN+MI+G  +  +  EA +L
Sbjct: 226 Y-----SSNGNLDS-----------ARSLFDAMPEKNLFSWNAMISGYRQNKQPYEALKL 269

Query: 206 FDEMP-----ERDAVSWNTILDGYAKAGEMNLA-----FELFEKIPHRNIVSWSTMVWGY 255
           F EM      E D V+  ++L   A  G ++L      F   +K+     V  + ++  Y
Sbjct: 270 FHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVG-TALIDMY 328

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K G++  ++ +FD MP K    W  +I+ +A  G AKEA  L+ +M   G  P++ T+I
Sbjct: 329 AKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMI 388

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            +L+AC  SGL+  G +   ++ ++           +VD+  + G L  A  +   M
Sbjct: 389 GVLSACNHSGLVEEGKRWFKAMEEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESM 445



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 21/190 (11%)

Query: 37  FAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN 96
           F +  KLD  R   +   LI   A C ++  +  VF+++ + +   +N LI A   N   
Sbjct: 308 FVRRKKLD--RATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFAINGRA 365

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGD 149
            +A  +F++M  KG   +  T   +L ACN       GK WF  ++    L  K  ++G 
Sbjct: 366 KEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWFKAMEEF-GLTPKIEHYG- 423

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                 ++D   + G   +  A+KL  SM  E + +  +S +       +++ A R+  E
Sbjct: 424 -----CMVDLLGRAGC--LQEAEKLMESMPYEANGIILSSFLFACGYSKDVARAERVLKE 476

Query: 209 MPERDAVSWN 218
             + +A  WN
Sbjct: 477 AIKMEA--WN 484


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/645 (34%), Positives = 351/645 (54%), Gaps = 49/645 (7%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL 59
           +   I    W   +    + L +L  +C ++ + K + AQII   L        KL+S  
Sbjct: 22  LQTQINKTIWHQLKSPTHQTLHHLLDQCSSMKRLKLVHAQIILHGLAAQVVTLGKLLS-- 79

Query: 60  ALCRQMG---LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF 116
            LC Q G    A  +F+ I  P+  +YN LIR    ++   ++  +F  M   G   + F
Sbjct: 80  -LCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQF 138

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T+PF+LKAC  K ++    ++HA   K G      V N+++ +Y  C ++    A+++F 
Sbjct: 139 TFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILS--ARQVFD 196

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEM--------------------------- 209
            + +R IVSWNSMIAG  K G   EA  LF EM                           
Sbjct: 197 DISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDL 256

Query: 210 ------------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                        E D++  N ++D YAK G +  A  +F+++  +++VSW++MV  Y+ 
Sbjct: 257 GRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYAN 316

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +E A  +F+ MP K +V W  II    ++G   EA  L+ +M  +G+ PDD TL+SI
Sbjct: 317 QGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSI 376

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L+ C+ +G L LG + H  I       +  +CN+L+DMYAKCG+L  A+ +F GM +K++
Sbjct: 377 LSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNV 436

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSWN ++  LA+HG GE+A+ +F  M+  G  PD+ TF G+L AC+H+G +D G  YF  
Sbjct: 437 VSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDI 496

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M   + I P VEHY CM+DLLGR G L EA+ L+Q MPV+P+ ++WG LLGACR +  +E
Sbjct: 497 MISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNLE 556

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           +A++++  L+ L   + G Y +LSN+++ +  W+ +  +R  M  +  +K    S +E+D
Sbjct: 557 IAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMKKIRKIMDDSGIKKCRAISFIEID 616

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
              ++F V D+ H  S  IY +++ L   LK VG+  K S+E+ E
Sbjct: 617 GCCYQFMVDDKRHCASTGIYSILDQLMDHLKSVGYPCK-SSEVEE 660


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/584 (39%), Positives = 330/584 (56%), Gaps = 46/584 (7%)

Query: 8   PTWFSKRRLLEE--KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-- 63
           PT     +LL+    L  L  CK+    KQ+ +QIIK  L    +   KLI   A+    
Sbjct: 21  PTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFG 80

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
            +  A+ +F  I+ P+  ++NT+IR    +S    A   ++ M   GV  +++T+PFLLK
Sbjct: 81  NLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLK 140

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           +C         + IH  + K G   D FV  SLI+ Y++ G +G   A+ +F     RD 
Sbjct: 141 SCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGY--AELVFSKSSLRDA 198

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           VS+ ++I G    G L +ARRLF+E+P RDAVSWN ++ GYA++G    A   F+++   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 244 NIV-SWSTMV--------------------W------------------GYSKDGDMEMA 264
           N+  + STMV                    W                   YSK GD++ A
Sbjct: 259 NVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKA 318

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + LF+ +  K ++ W ++I GY+     KEA  L+ +M+++ ++P+D T +SIL ACA  
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 325 GLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           G L LG  +HA I+K +    NT++  +L+DMYAKCG+++ A  VF GM  K L SWNAM
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLAMHG    AL LF +M+DEGF PD  TFVGVL AC+HAG ++ G Q F SM  DY 
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYD 498

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P+++HYGCMIDLLGR+G   EA  L+++M ++P+  IWG+LLGACR H  VEL E   
Sbjct: 499 ISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAA 558

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
             L  L+  +PG Y +LSNI+A  G W+ VA +R ++     +K
Sbjct: 559 KHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/641 (34%), Positives = 350/641 (54%), Gaps = 48/641 (7%)

Query: 1   MSAPIRAPTWFSKRRLLEEKL---QNLH----KCKNLNQTKQLFAQIIKLDLQRDPYIAP 53
           +S  I   T  SK  L E K    Q LH    +C +L Q K + AQII   L        
Sbjct: 13  VSFCIHTETQISKTILQELKSPTHQTLHYLIDQCISLKQLKHVHAQIILHGLATQVLTLG 72

Query: 54  KLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113
           KL+SS    R +  A K+F+ I  P+  ++N LI+    +S   ++  ++  M   G+  
Sbjct: 73  KLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILP 132

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           + FT PF+LKAC  K+ + L   +HA  +K G      V N++++ Y  CG++  + A++
Sbjct: 133 NQFTIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLI--TSARR 190

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--------------------- 212
           +F  + ER +VSWNSMI G  K G   EA  +F EM E                      
Sbjct: 191 VFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGN 250

Query: 213 ------------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                             D++  N ++D YAK G +  A  +F+++  +++VSW+ M+  
Sbjct: 251 FDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINA 310

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y+  G ++ A   F++MP K +V W  II  + ++G+  EA  L+ +M ++G+  +D TL
Sbjct: 311 YANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTL 370

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           ++IL++C+  G L LG + H+ I       +  +CNA++DMYAKCG+L  AM VF GM +
Sbjct: 371 VAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE 430

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K+ VSWN ++  LA+HG G++A+ +F +M+  G  PD+ TF G+L AC+H+G +D G  Y
Sbjct: 431 KNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHY 490

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M   +GI P VEHY CM+DLLGR G L EA+ L++ MPV+P+ ++W  LLGACR + 
Sbjct: 491 FEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYG 550

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            + + ++++  L+ L   + G Y +LSN+++ +  W+ + N+   + +   +K    S +
Sbjct: 551 NLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISFI 610

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           E+D   ++F V D+ H  S  IY M+  L   LK  G+  K
Sbjct: 611 EIDGCCYQFMVDDKRHGASTSIYSMLGQLMDHLKSAGYPCK 651


>gi|242059659|ref|XP_002458975.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
 gi|241930950|gb|EES04095.1| hypothetical protein SORBIDRAFT_03g043630 [Sorghum bicolor]
          Length = 590

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/526 (39%), Positives = 311/526 (59%), Gaps = 10/526 (1%)

Query: 67  LAIKVFNDIQDP---DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           LA  VF  + +P   D   +NT IR        A A   F  M+  GV  D +T+P +LK
Sbjct: 63  LADAVFARLPEPAARDPFPWNTAIRLHAPGRPRA-ALLYFARMRSCGVRPDAYTFPAVLK 121

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG--ER 181
           AC          ++HA   + G   D+F  N+LI  Y  C ++     +K+F   G   R
Sbjct: 122 ACGCAPGCRAGLLVHAEAVRRGLGADLFTVNALISFY--CRILDCISGRKVFDEAGGVSR 179

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE--MNLAFELFEK 239
           D+VSWNSM+AG V  GE+  A+ LFDEMP+RDA SW  ++DGY K G   ++ A ELF++
Sbjct: 180 DLVSWNSMVAGYVGCGEMGLAQELFDEMPQRDAFSWGALIDGYGKQGGAGVDRARELFDQ 239

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +  R++V W++M+ GY++ G M+ A+ LF+ MP + ++ W+I+I G+   G AKEA   +
Sbjct: 240 MTERDLVCWNSMIDGYARHGRMDEARSLFEEMPERNVISWSIVIDGHVRCGEAKEALEHF 299

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M   G++PD    +  ++ACA+ G L  G  +H+ + K +   +  V  AL+DMY KC
Sbjct: 300 QSMLRCGIRPDRVAAVGAVSACAQLGALEQGRWLHSYLEKKKVLSDVVVQTALIDMYMKC 359

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G +D AM +F  M ++ +V+WN M+ GL  HG G  A+ LF RM+ E    D  + + +L
Sbjct: 360 GRMDLAMLIFESMPERSVVTWNVMIVGLGTHGYGLDAVMLFHRMEAERVAVDDLSLLAML 419

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            ACTHAG + +G++ F+ M++D+GI P+VEHYG ++DLLGR+GRL +A   +++MP+EP 
Sbjct: 420 TACTHAGLVSEGLEIFHRMKKDFGIDPKVEHYGALVDLLGRAGRLDQARHAIETMPMEPT 479

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
             +WG+LL ACR H+ VELAE  ++ L  L   D G Y +LSNI+A  G W  V  +R  
Sbjct: 480 PELWGSLLAACRSHSCVELAELSVERLANLGADDSGVYVLLSNIYADEGMWGDVLRIRKL 539

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
           M     +K  G S +EVD E+HEF      H  +++IY M+  L K
Sbjct: 540 MSDEGMRKDIGRSVIEVDGEIHEFVNGGGSHLCTDEIYLMLWNLSK 585


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 322/577 (55%), Gaps = 45/577 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI VF  IQ+P++ ++NT+ R    +     A ++++ M   G+  +++T+PFLLK+C  
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                    IH  + K GY  D++V  SLI  Y +     +  A K+F     RD+VS+ 
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNE--RLEDAHKVFDRSSHRDVVSYT 133

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----- 242
           +++ G    G +  AR +FDE+P +D VSWN ++ GY + G    A ELF+++       
Sbjct: 134 ALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRP 193

Query: 243 ---------------------RNIVSW-------------STMVWGYSKDGDMEMAKLLF 268
                                R + SW             + ++  YSK G+ME A  LF
Sbjct: 194 DESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLF 253

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
             +  K ++ W I+I GY    + KEA  L+ +M  +G  P+D T++SIL ACA  G + 
Sbjct: 254 LGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAID 313

Query: 329 LGMKVHASINKYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
           +G  +H  I+K R K  TN  +   +L+DMY+KCG ++ A  VFN M  K L +WNAM++
Sbjct: 314 IGRWIHVYIDK-RLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIF 372

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G AMHG+   A  +FSRM+     PD  TFVG+L AC+HAG +D G   F SM  +Y I 
Sbjct: 373 GFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKIT 432

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P++EHYGCMIDLLG SG  KEA  ++ +M +EP+ +IW +LL AC+ H  VEL E+    
Sbjct: 433 PKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQN 492

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L +++ ++PG+Y +LSNI+A  G WN+VA +R  +     +K  G SS+E+D+ VHEF +
Sbjct: 493 LFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFII 552

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
            D+ HP++ +IY M+  +   L+  G     S  + E
Sbjct: 553 GDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQE 589



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 197/448 (43%), Gaps = 55/448 (12%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN------- 73
           L  C  L  +K   Q+   ++KL  + D Y+   LIS      ++  A KVF+       
Sbjct: 70  LKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDV 129

Query: 74  ------------------------DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
                                   +I   DV  +N +I   V+     +A  +F +M + 
Sbjct: 130 VSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKT 189

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   ++ A        L + +H+ I   G+  ++ + N+LID YSKCG   + 
Sbjct: 190 NVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCG--EME 247

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A  LF+ +  +D++SWN +I G        EA  LF EM       + V+  +IL   A
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 226 KAGEMNLAFELFEKIPHR-----NIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
             G +++   +   I  R     N  S  T ++  YSK GD+E A  +F+ M  K+L  W
Sbjct: 308 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-N 338
             +I G+A  G A  A  ++ +M +  +KPDD T + +L+AC+ +G+L LG  +  S+ +
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTH 427

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ---GE 394
            Y+          ++D+    G    A  + + MT + D V W ++L    MHG    GE
Sbjct: 428 NYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGE 487

Query: 395 K-ALGLFSRMKDEGFGPDKYTFVGVLCA 421
           K A  LF   K E   P  Y  +  + A
Sbjct: 488 KFAQNLF---KIEPNNPGSYVLLSNIYA 512



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 89/196 (45%), Gaps = 8/196 (4%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF  + + +L+ WN M  G A+      AL L+  M   G  P+ YTF  +L +
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 422 CTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           C       +G+Q + + ++  Y +   V  +  +I +  ++ RL++A + V       + 
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYV--HTSLISMYVQNERLEDAHK-VFDRSSHRDV 129

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           + +  L+        +E A  + D    +   D  ++  + + +  TG++ +   +  +M
Sbjct: 130 VSYTALVTGYASRGYIESARNMFD---EIPVKDVVSWNAMISGYVETGNYKEALELFKEM 186

Query: 541 KKTRAQKPSGASSVEV 556
            KT   +P  ++ V V
Sbjct: 187 MKTNV-RPDESTMVTV 201


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 327/574 (56%), Gaps = 42/574 (7%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-QMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + +K+L A +I+  L  DP++   +I S +L    +  A  VFN I+ P + ++N +IR 
Sbjct: 31  DTSKELHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRG 90

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  ++  M  +G+  +N T  FL KAC   +     + IH    K G+   
Sbjct: 91  LSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESY 150

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +FV N+LI  Y+ CG +G   A+K+F  M +RD+VSWN++I G  +  +  E  RLFD M
Sbjct: 151 LFVSNALIHMYAMCGQLG--FAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAM 208

Query: 210 P----ERDAVS-------------W----------------------NTILDGYAKAGEM 230
                + DAV+             W                      NT++D Y +    
Sbjct: 209 TAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLA 268

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
            LA  +F+++  RNIVSW+ +V G++K G++  A+ LFD MP + ++ WT +I+GY++  
Sbjct: 269 ELAQGVFDRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQAS 328

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              +A +L+ +M  A +KPD  T+ S+L+ACA  G L +G  VH  I ++  + +  V N
Sbjct: 329 QFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGN 388

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+DMY KCG ++ A+ VF+ M  KD VSW +++ GLA++G    AL LFS+M  EG  P
Sbjct: 389 SLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQP 448

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
              TFVG+L AC HAG ++KG++YF SME  +G++P ++HYGC++DLL RSG + +A   
Sbjct: 449 THGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEF 508

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++ MP+ P+ ++W  LL AC+ H  V LAE     L+ L   D GNY +LSN +A    W
Sbjct: 509 IKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRW 568

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
           +    +R  M+ +  QKPSG+SS+EVD  V  +S
Sbjct: 569 DDAMKMRELMEDSDVQKPSGSSSIEVDGMVSNYS 602



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 204 RLFDE---MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS-KDG 259
           RLF      P+   VS N+I    +K     L   L     H +    S ++  YS    
Sbjct: 9   RLFTSSSMAPKSGRVSKNSISTDTSK----ELHAHLIRTQLHTDPFLMSDVIRSYSLSST 64

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           ++  A L+F+++   TLV W  +I G ++     EA  +Y +M   G+  ++ TLI +  
Sbjct: 65  NLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITGNNLTLIFLFK 124

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA    +  G K+H    K  F+    V NAL+ MYA CG L  A  +F+GM  +DLVS
Sbjct: 125 ACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVS 184

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG---FIDKGVQYFY 436
           WN ++ G + + + ++ L LF  M       D  T V ++ AC+H G   F D  V+Y  
Sbjct: 185 WNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYI- 243

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
              ++  +   V     +ID+ GR   L E  + V     E N + W  L+    K   +
Sbjct: 244 ---KENNLEIDVYLGNTLIDMYGRRS-LAELAQGVFDRMRERNIVSWNALVMGHAKVGNL 299

Query: 497 ELAEEVLD 504
             A ++ D
Sbjct: 300 TAARKLFD 307


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/552 (38%), Positives = 317/552 (57%), Gaps = 45/552 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  VF  IQ+P+  ++NT+IR    +S    +  +++ M   G+  +++T+PFLLK+C  
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   Q IH  + K G+  D++V  SLI  Y +     +  A K+F     RD+VS+ 
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNW--RLEDAYKVFDRSSHRDVVSYT 134

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------- 240
           ++I G    G++  A++LFDE+P +D VSWN ++ GYA+ G    A ELFE++       
Sbjct: 135 ALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRP 194

Query: 241 ------------PH-------RNIVSW-------------STMVWGYSKDGDMEMAKLLF 268
                        H       R + SW             + ++  YSK G++E A  LF
Sbjct: 195 DESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
             +  K ++ W  +I GY    + KEA  L+ +M  +G  P+D T++S+L ACA  G + 
Sbjct: 255 QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAID 314

Query: 329 LGMKVHASINKYRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
           +G  +H  I+K R K  TN  +   +L+DMYAKCG ++ A  VFN M  K L SWNAM++
Sbjct: 315 IGRWIHVYIDK-RLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 373

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G AMHG+ + +  LFSRM+  G  PD  TFVG+L AC+H+G +D G   F SM +DY + 
Sbjct: 374 GFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMT 433

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P++EHYGCMIDLLG SG  KEA  ++ +M +EP+ +IW +LL AC+ H  VELAE     
Sbjct: 434 PKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQN 493

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           LI+++  +P +Y +LSNI+A+ G W  VA +R  +     +K  G SS+EVD+ V EF V
Sbjct: 494 LIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVV 553

Query: 566 CDQLHPKSEQIY 577
            D+ HP++ +IY
Sbjct: 554 GDKFHPQNREIY 565



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/445 (26%), Positives = 197/445 (44%), Gaps = 46/445 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN------- 73
           L++  K K   + +Q+  Q++KL    D Y+   LIS      ++  A KVF+       
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 74  ------------------------DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
                                   +I   DV  +N +I    +     +A  +F +M + 
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  TY  +L AC       L + +H+ +   G+  ++ + N+LID YSKCG   V 
Sbjct: 191 NVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG--EVE 248

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYA 225
            A  LF  +  +D++SWN++I G        EA  LF EM       + V+  ++L   A
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 226 KAGEMNLAFELFEKIPHR-----NIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
             G +++   +   I  R     N  S  T ++  Y+K GD+E A  +F+ M  K+L  W
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 368

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G A  +  L+ +M + G++PDD T + +L+AC+ SG+L LG  +  S+ +
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 428

Query: 340 -YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKAL 397
            Y+          ++D+    G    A  + N M  + D V W ++L    MHG  E A 
Sbjct: 429 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAE 488

Query: 398 GLFSRM-KDEGFGPDKYTFVGVLCA 421
                + K E   P  Y  +  + A
Sbjct: 489 SFAQNLIKIEPENPSSYILLSNIYA 513



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 183/402 (45%), Gaps = 77/402 (19%)

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF--------------------- 237
           L  A  +F+ + E + + WNT++ G+A + +   +  L+                     
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 238 ----------EKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
                     ++I  +        ++   ++++  Y ++  +E A  +FDR   + +V +
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 280 TII-------------------------------ISGYAEKGMAKEAARLYDQMEEAGLK 308
           T +                               ISGYAE G  KEA  L+++M +  ++
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           PD+ T +++L+ACA SG + LG +VH+ ++ + F  N  + NAL+D+Y+KCG ++ A  +
Sbjct: 194 PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGL 253

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F G++ KD++SWN ++ G       ++AL LF  M   G  P+  T + VL AC H G I
Sbjct: 254 FQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAI 313

Query: 429 DKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           D G   + Y  +R  G+         +ID+  + G ++ A ++  SM +  +   W  ++
Sbjct: 314 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSM-LHKSLSSWNAMI 372

Query: 488 GACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
                H     A+   D   R++  G +P + T +  + A +
Sbjct: 373 FGFAMHGR---ADASFDLFSRMRKIGIEPDDITFVGLLSACS 411



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 38/201 (18%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A SVF  + + + + WN M+ G A+      +L L+  M   G  P+ YTF  +L +
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 422 CTHAGFIDKGVQYF-------------------------YSMERDYGILPQVEH-----Y 451
           C  +    +G Q                           + +E  Y +  +  H     Y
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEP----NAIIWGTLLGACRKHNAVELAEEVLDCLI 507
             +I      G ++ A +L   +PV+     NA+I G     C K  A+EL EE++   +
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK-EALELFEEMMKMNV 192

Query: 508 RLKGSDPGNYTMLSNIFAATG 528
           R    D   Y  + +  A +G
Sbjct: 193 R---PDESTYVTVLSACAHSG 210


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/523 (39%), Positives = 309/523 (59%), Gaps = 43/523 (8%)

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P +  +  LIR+ +      +A  V+  ++ KGV+      P +LKAC   +     + +
Sbjct: 58  PSLSNWCHLIRSYLSQGAPREALLVYTGLRRKGVYLLGVA-PLVLKACASLSIVKHGKAL 116

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG----- 192
           HA   K G   D+ +  SL+  Y+KCG   V  ++K+F  M ER+ V+WN+MI G     
Sbjct: 117 HAESIKNGVDFDVMIGTSLVCMYAKCG--NVVDSRKVFDYMPERNAVTWNAMICGYLGNG 174

Query: 193 --------------------------LVKGGELSEARRLFDEMPE--RDAVSWNTILDGY 224
                                       + G+   ARR FD++P   R+ V+W  ++DGY
Sbjct: 175 DSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGY 234

Query: 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
           A+  EM  A E+FE +P RN  +WS+M+ GY K G+++ A+ +FDR+P + LV W  +IS
Sbjct: 235 ARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLIS 294

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GYA+ G ++EA   + +M+  G +PD+ T+ S+L+AC++ GLL  G K+H  +N    K 
Sbjct: 295 GYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKL 354

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           N  V N LVDMYAKCG L NA  +F GM  ++   WN+M+ G A+HGQ ++AL  F RM+
Sbjct: 355 NQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRME 414

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
           D   GPD+ TF+ VL AC H GF++ G++ F  ME+ YG+   ++HYGC+IDLLGR+GR+
Sbjct: 415 DSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDLLGRAGRI 473

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPGNYTM 519
           KEA  L++ MPV+PN ++WG LLGACR H  +E+A+ V++ ++++      G D  +Y +
Sbjct: 474 KEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCD-SHYVL 532

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           LSNI+AA+  W K   +R++M     QK SG SS+   N  HE
Sbjct: 533 LSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 575



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           QR+ +    +IS       +  A  +F+ I   ++  +N+LI    QN  + +A   F  
Sbjct: 252 QRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGK 311

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           MQ +G   D  T   +L AC+        + IH ++   G   + FV N L+D Y+KCG 
Sbjct: 312 MQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCG- 370

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
             ++ A+ +F  M  R+   WNSMI+G    G+  EA   F  M +     D +++ ++L
Sbjct: 371 -DLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 429

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAK 274
              A  G +N   E+F ++    + +    +  ++    + G ++ A  L  RMP K
Sbjct: 430 SACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVK 486


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 331/567 (58%), Gaps = 10/567 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K + ++I+    + D  +   L+   A C       +VF  + + D+  +NT+I    + 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  V+  MQ +GV  +  TY  LL AC      H  + IH+ + K G+  DI V 
Sbjct: 307 GYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           N+LI  YS+CG   +  A+ +F  M  +D++SW +MI GL K G  +EA  ++ EM    
Sbjct: 367 NALISMYSRCG--SIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAK 265
            E + V++ +IL+  +    +     + +++    + +     +T+V  YS  G ++ A+
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDAR 484

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FDRM  + +V +  +I GYA   + KEA +L+D+++E GLKPD  T I++L ACA SG
Sbjct: 485 QVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 544

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L    ++H  + K  F  +T+V NALV  YAKCGS  +A  VF  MTK++++SWNA++ 
Sbjct: 545 SLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIG 604

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G A HG+G+ AL LF RMK EG  PD  TFV +L AC+HAG +++G +YF SM +D+ I+
Sbjct: 605 GSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAII 664

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P +EHYGCM+DLLGR+G+L EA  L+++MP + N  IWG LLGACR H  V +AE   + 
Sbjct: 665 PTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES 724

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
            ++L   +   Y  LS+++AA G W+  A +R  M++    K  G S ++V +++H F  
Sbjct: 725 SLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVA 784

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D+ HP+SE+IY  ++ L   +K  G+
Sbjct: 785 EDRSHPQSEKIYAELDRLTHAMKMKGY 811



 Score =  232 bits (592), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 268/516 (51%), Gaps = 18/516 (3%)

Query: 24  LHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  CK+   L   +++  Q ++  L  D  +A  +++  A C  +  A +VF+ ++   V
Sbjct: 133 LSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +   I        +  AF +F  M+++GV  +  TY  +L A +        + +H+ 
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I   G+  D  V  +L+  Y+KCG       +++F  +  RD+++WN+MI GL +GG   
Sbjct: 253 ILNAGHESDTAVGTALVKMYAKCG--SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWE 310

Query: 201 EARRLFDEMPERDAVSWNTI-----LDGYAKAGEMNLAFELFEKIPHRNIVS----WSTM 251
           EA  ++++M +R+ V  N I     L+    +  ++   E+  ++      S     + +
Sbjct: 311 EASEVYNQM-QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNAL 369

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  YS+ G ++ A+L+FD+M  K ++ WT +I G A+ G   EA  +Y +M++AG++P+ 
Sbjct: 370 ISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNR 429

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T  SIL AC+    L  G ++H  + +     + +V N LV+MY+ CGS+ +A  VF+ 
Sbjct: 430 VTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDR 489

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M ++D+V++NAM+ G A H  G++AL LF R+++EG  PDK T++ +L AC ++G ++  
Sbjct: 490 MIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 549

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
            +  +++ R  G          ++    + G   +A  + + M  + N I W  ++G   
Sbjct: 550 RE-IHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKM-TKRNVISWNAIIGGSA 607

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +H   + A ++ +  ++++G  P   T +S + A +
Sbjct: 608 QHGRGQDALQLFE-RMKMEGVKPDIVTFVSLLSACS 642



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 148/570 (25%), Positives = 268/570 (47%), Gaps = 51/570 (8%)

Query: 21  LQNLHKC---KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ- 76
           ++ L +C   K+L   +Q+   II+     D Y    LI+    C  +  A +V+  +  
Sbjct: 27  MKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSY 86

Query: 77  -DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            +  VH +N ++   +Q     +A ++   MQ+ G+  D  T    L +C         +
Sbjct: 87  MERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGR 146

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IH    + G   D+ V N +++ Y+KCG   +  A+++F  M ++ +VSW   I G   
Sbjct: 147 EIHFQAMQAGLLFDVKVANCILNMYAKCG--SIEEAREVFDKMEKKSVVSWTITIGGYAD 204

Query: 196 GGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI---PHRNIVSW 248
            G    A  +F +M +     + +++ ++L+ ++    +     +  +I    H +  + 
Sbjct: 205 CGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAV 264

Query: 249 ST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            T +V  Y+K G  +  + +F+++  + L+ W  +I G AE G  +EA+ +Y+QM+  G+
Sbjct: 265 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGV 324

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            P+  T + +L AC  S  L  G ++H+ + K  F  +  V NAL+ MY++CGS+ +A  
Sbjct: 325 MPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARL 384

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT---- 423
           VF+ M +KD++SW AM+ GLA  G G +AL ++  M+  G  P++ T+  +L AC+    
Sbjct: 385 VFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAA 444

Query: 424 -------HAGFIDKGVQY----------FYSM---------ERDYGILPQVEHYGCMIDL 457
                  H   ++ G+             YSM           D  I   +  Y  MI  
Sbjct: 445 LEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGG 504

Query: 458 LGRSGRLKEALRL---VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG--S 512
                  KEAL+L   +Q   ++P+ + +  +L AC    ++E A E+   L+R  G  S
Sbjct: 505 YAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREI-HTLVRKGGFFS 563

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           D      L + +A  G ++  + V  +M K
Sbjct: 564 DTSVGNALVSTYAKCGSFSDASIVFEKMTK 593



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 136/474 (28%), Positives = 230/474 (48%), Gaps = 46/474 (9%)

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           A  V   +Q++G   ++  Y  +LK C         + +H  I +     D +  N+LI+
Sbjct: 7   AVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALIN 66

Query: 159 SYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS 216
            Y +CG   +  A++++  +S  ER + SWN+M+ G ++ G + +A +L  +M +     
Sbjct: 67  MYIQCG--SIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAP 124

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLF 268
             T +  +  + +   A E   +I  +        ++   + ++  Y+K G +E A+ +F
Sbjct: 125 DRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVF 184

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D+M  K++V WTI I GYA+ G ++ A  ++ +ME+ G+ P+  T IS+L A +    L 
Sbjct: 185 DKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALK 244

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
            G  VH+ I     + +T V  ALV MYAKCGS  +   VF  +  +DL++WN M+ GLA
Sbjct: 245 WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 304

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH----------------AGFI-DKG 431
             G  E+A  ++++M+ EG  P+K T+V +L AC +                AGF  D G
Sbjct: 305 EGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIG 364

Query: 432 VQ----YFYS---------MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--- 475
           VQ      YS         +  D  +   V  +  MI  L +SG   EAL + Q M    
Sbjct: 365 VQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG 424

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-GSDPGNYTMLSNIFAATG 528
           VEPN + + ++L AC    A+E    +   ++     +D      L N+++  G
Sbjct: 425 VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCG 478



 Score =  164 bits (416), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 193/381 (50%), Gaps = 15/381 (3%)

Query: 24  LHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ C N   L+  K++ +++ K     D  +   LIS  + C  +  A  VF+ +   DV
Sbjct: 335 LNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDV 394

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I    ++   A+A  V+ +MQ+ GV  +  TY  +L AC+        + IH  
Sbjct: 395 ISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQ 454

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G   D  V N+L++ YS CG   V  A+++F  M +RDIV++N+MI G        
Sbjct: 455 VVEAGLATDAHVGNTLVNMYSMCG--SVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGK 512

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MV 252
           EA +LFD + E     D V++  +L+  A +G +  A E+   +      S ++    +V
Sbjct: 513 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALV 572

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G    A ++F++M  + ++ W  II G A+ G  ++A +L+++M+  G+KPD  
Sbjct: 573 STYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIV 632

Query: 313 TLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T +S+L+AC+ +GLL  G +   S+++ +           +VD+  + G LD A ++   
Sbjct: 633 TFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKT 692

Query: 372 MT-KKDLVSWNAMLYGLAMHG 391
           M  + +   W A+L    +HG
Sbjct: 693 MPFQANTRIWGALLGACRIHG 713



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 134/278 (48%), Gaps = 11/278 (3%)

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           +++ G + +    + +L  C E   L  G +VH  I ++R   +    NAL++MY +CGS
Sbjct: 14  LQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGS 73

Query: 362 LDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           ++ A  V+  ++  ++ + SWNAM+ G   +G  EKAL L  +M+  G  PD+ T +  L
Sbjct: 74  IEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSFL 133

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
            +C   G ++ G + +F +M+   G+L  V+   C++++  + G ++EA  +   M  + 
Sbjct: 134 SSCKSPGALEWGREIHFQAMQA--GLLFDVKVANCILNMYAKCGSIEEAREVFDKME-KK 190

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS--NIFAATG--DWNKVA 534
           + + W   +G        E A E+   +   +G  P   T +S  N F++     W K  
Sbjct: 191 SVVSWTITIGGYADCGRSETAFEIFQKM-EQEGVVPNRITYISVLNAFSSPAALKWGKAV 249

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           + R+      +    G + V++  +   +  C Q+  K
Sbjct: 250 HSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEK 287


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/580 (38%), Positives = 338/580 (58%), Gaps = 19/580 (3%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           + L E+ L  + +CK+ N  KQ+ AQ++   + +  ++  K+I      + +  A  VFN
Sbjct: 30  QTLTEKLLSLIKQCKSKNLLKQIHAQMLINSIPKPNFLLSKIID----LKDLAYASLVFN 85

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAF--RVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
            +  P+++ +N ++R  +  +     F   ++  ++  G+  +NFTYPFL  AC      
Sbjct: 86  QLTKPNIYAFNVMLRG-LATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGL 144

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
              ++ H L++K G  GD +V +SLI  Y++CG +G   A+K+F  MG+RD+VSWNSMI+
Sbjct: 145 VHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMG--FARKVFDEMGDRDLVSWNSMIS 202

Query: 192 GLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLA--FELF--EKIPHR 243
           G  K G   EA  LF EM E     D ++  ++L      G++ L    E F  EK    
Sbjct: 203 GYSKMGFTKEAIGLFMEMREEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEV 262

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           N    S ++  Y K GD+  A+ +FD MP K +V W  II+GYA+ G + EA  L++ M 
Sbjct: 263 NSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMR 322

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
           EAG  PD  T+I +L+AC+  G L LG  V    ++   + +  V +AL+DMYAKCGSLD
Sbjct: 323 EAGPHPDRVTMIEVLSACSTIGALDLGKWVETHASEKGLQHDVYVASALIDMYAKCGSLD 382

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEG-FGPDKYTFVGVLCA 421
           +A+ VF  M  K+ VSWNAM+  LA HGQ ++AL LF RM KD G   P+  TF+GVL A
Sbjct: 383 DAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSA 442

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C HAG +D+G Q F SM   +G++P+VEHY CM+DL  R+G L EA  L++ MP +P+ I
Sbjct: 443 CVHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEI 502

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           + G+LLGAC++    ++ E V+   + ++ S+ GNY + S I+A    W+  A +R+ M+
Sbjct: 503 VLGSLLGACQRRRNADVGERVIQLFLEMELSNSGNYVISSKIYANMRRWDDSAKMRVLMR 562

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           +    K  G S +++   VHEF   D LH  S  IYQ++N
Sbjct: 563 QCGVSKTPGCSWIDIGAHVHEFHAGDSLHNHSMNIYQLLN 602


>gi|225427280|ref|XP_002278897.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 719

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/566 (39%), Positives = 332/566 (58%), Gaps = 8/566 (1%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL-ALCRQMGLAIKVFNDIQDPDVHLYNT 85
           C +  +  Q+  Q+I   L + P  A + + +L +    +  A+ +F  +++PD  + NT
Sbjct: 69  CGSTKEFNQIHTQLIVSGLLQQPLAAGRAVKTLCSFPDSVQHAVSLFEGLEEPDAFICNT 128

Query: 86  LIRACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           ++R  V  +    A   + + M  K V  +++T+P L+K C         + IHA I K 
Sbjct: 129 IMRTYVNVNDPYTALGFYYEQMVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKF 188

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  D+FV NSLI  YS CG +G   A+ +F      D+V+WNSMI G VK GE+  AR 
Sbjct: 189 GFELDLFVRNSLIHMYSVCGRIGD--ARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARE 246

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           LF+EMPERD  SWN+++ GY   G+M  A +LF K+P R+IVSW+ M+ GY++  +ME+A
Sbjct: 247 LFEEMPERDLFSWNSMIAGYVGNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIA 306

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             LF+ MP + +V W I+++ Y       E  R++D+M    + P++ TL+S+L ACA  
Sbjct: 307 CELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHL 365

Query: 325 GLLGLGMKVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           G L  G  +H+ I   R  + +  +  AL+ MYAKCG++D A  VF+ M+ + +VSWN+M
Sbjct: 366 GRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSM 425

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G  MHGQ +KAL +F  M+  G  P+  TF+ VL AC H+G I +G  YF  M R Y 
Sbjct: 426 IMGYGMHGQADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYK 485

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P+VEHYGCM+DLLGR+G +K+   L++ MP+E    +WG LL ACR H+  ELAE V 
Sbjct: 486 IEPKVEHYGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVA 545

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN-EVHE 562
             LI L+  D G Y +LSNI+AA G W+ V  VR  MK+    K +G S V ++      
Sbjct: 546 KRLIELEPRDIGPYLLLSNIYAAEGKWDDVEIVRKMMKERGLTKTTGFSWVHIEEFGTQS 605

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLK 588
           F     +H KS  +Y +++ +   +K
Sbjct: 606 FVEKASVHRKS-MMYSILSDMATQMK 630


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/593 (36%), Positives = 332/593 (55%), Gaps = 52/593 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA---IKVFN---- 73
           +Q +  CKN N   ++ A++I     ++  +  K++ + A  R+  LA     VF     
Sbjct: 17  IQLVGSCKNSNDVGKIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAEFARYVFREYHV 76

Query: 74  ------DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
                 D++DP   L+N +I++        +A   F  M E G+  D F++  +LKAC+ 
Sbjct: 77  CSFAPGDVKDP--FLWNLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKACSR 134

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             +      IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+N
Sbjct: 135 LGFLKGGMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLG--FARQIFDRMPQRDSVSYN 192

Query: 188 SMIAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKAGE-MNLAFELFEKIPHRN 244
           SMI G +K G +  AR LFD MP   ++ +SWN+++ GYA+  + +N+A +LF ++P ++
Sbjct: 193 SMIDGYIKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKD 252

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-- 302
           ++SW+++++GY K G ME AK LF  MP + +V W  +I GYA+ G   +A  L+DQM  
Sbjct: 253 LISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPH 312

Query: 303 ------------------------------EEAGLKPDDGTLISILAACAESGLLGLGMK 332
                                         +E+ L PD+ TL+ +L+A A+ G L   M 
Sbjct: 313 RDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMD 372

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  I + +F     +  AL+DMY+KCGS+  AM VF G+  K +  WNAM+ GLA+HG 
Sbjct: 373 MHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNAMIGGLAIHGL 432

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           GE A  +   ++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HYG
Sbjct: 433 GESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYG 492

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+DLL R G ++ A  L++ MP+EPN +IW T L AC  H   E+ E V   LI   G 
Sbjct: 493 CMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELVAKHLILQAGY 552

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +P +Y +LSN++A+ G W  V NVR  MK+ + QK  G S +E+D  VHEF V
Sbjct: 553 NPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWIELDGRVHEFFV 605


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/534 (38%), Positives = 314/534 (58%), Gaps = 11/534 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  CK      Q+ A +I+  L++D ++  + IS+      +  +  VF+ +  P   L+
Sbjct: 36  LKLCKTHIDLHQVHAHLIQKGLEQDSFLVTQFISASNSVAHISYSTSVFDRVLSPSTFLW 95

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N+L+              +++ M+ +    D +T+P LLK C  +        +H  I +
Sbjct: 96  NSLVSGYCAKLQFVDIISLYVRMKREDGAPDRYTFPSLLKVCASEGKMMEGMALHGSILR 155

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           CG   DI+V  SL++ Y K G++    A+K+F  M ER++VSW +MI G    G L EA+
Sbjct: 156 CGVDEDIYVTTSLVNLYGKGGLI--DCARKVFDGMSERNVVSWTAMIVGYSSIGNLVEAK 213

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           RLFD MPER+  SWN I+ GY K G++  A + F+++P +N+VS++TM+ GY+K GDM  
Sbjct: 214 RLFDLMPERNVASWNAIIGGYMKMGDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLS 273

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LF + P + ++ W+ +ISGY + G   EA + + +M    +KPD   L S++ AC++
Sbjct: 274 ARNLFQKAPERDIIAWSALISGYTQNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQ 333

Query: 324 SGLLGLGMKVHASINKYRFKCNTN-----VCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            G L L   V    + Y  +C+ +     V  AL+DM AKCG+++ AM +F  M K+DL+
Sbjct: 334 LGNLDLAKWV----DSYATRCSVDLRGAHVTAALIDMNAKCGNMERAMYLFEKMPKRDLI 389

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           S+ +++ GL++HG G++A+ LF RM  E   PD   F  +L AC+ AG +D+G  YF  M
Sbjct: 390 SYCSVMQGLSIHGHGDQAVSLFERMLGEDLTPDDVAFTVILTACSRAGLVDEGWHYFEMM 449

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
              Y ++P V+HY C++DLL RSGRLKEA  L++S+PV+ +A  WG LLGAC+ +   EL
Sbjct: 450 RCKYSMVPSVDHYACIVDLLSRSGRLKEAYELIKSVPVQSHAGAWGALLGACKLYCDSEL 509

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           AE V   LI ++  + GNY +LSNI+AA   W  V+ VR QM +   +K  G S
Sbjct: 510 AEVVASRLIEIEPENAGNYVLLSNIYAAADRWLDVSAVRNQMNERGLRKIPGCS 563


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 324/589 (55%), Gaps = 37/589 (6%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA--LCRQMGLA 68
            S++ +L+  L N     +L+  KQ+ A  ++    +D Y++  L+   A      +  A
Sbjct: 26  LSQKTILD--LLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFA 83

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
           +KVF  + +P+V ++N +I+ C+QN+   +A   +  M       + FTYP L KAC   
Sbjct: 84  LKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAA 143

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
                   +HA + K G  GD+ + ++ I  Y   G                        
Sbjct: 144 EAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFG------------------------ 179

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
                    E+  ARR+  E    D + +N ++DGY K GE+  A ELF  +  +N+ SW
Sbjct: 180 ---------EVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSW 230

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + MV G +K G +E A+ LF+ M  K  + W+ +I GY + G  KEA  +++ M+   ++
Sbjct: 231 NVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIR 290

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P    L S+LAACA  G L  G  +HA +N      +  +  ALVDMYAKCG LD A  V
Sbjct: 291 PRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDV 350

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F  M KK++ +WNAM+ GL MHG+ E A+ LF +M+ + F P+  T +GVL AC H+G +
Sbjct: 351 FEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMV 410

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           D+G++ F SME  YGI P +EHYGC++DLLGR+G L EA  ++ SMP+EP+A +WG LLG
Sbjct: 411 DEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLG 470

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACRKH  VEL E V   L+ L+  + G Y +LSNI+A  G W+ VANVR  MK+   +  
Sbjct: 471 ACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTS 530

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +G S ++ D  VHEF + D  HP+ + IY M+  + K LK  G +   S
Sbjct: 531 TGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTS 579


>gi|224091939|ref|XP_002309408.1| predicted protein [Populus trichocarpa]
 gi|222855384|gb|EEE92931.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 194/533 (36%), Positives = 322/533 (60%), Gaps = 7/533 (1%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +  CK +    Q  A II   L++D +I    +S   +   +  +  +FN + +P   LY
Sbjct: 16  IKSCKTIPHLHQFHAHIIHKGLEQDHFIISHFLS---ISTSVSYSTSIFNRLLNPSTFLY 72

Query: 84  NTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           N L++   +NS     F +F  M Q +   +D +TYP L+K C+ +      +++H    
Sbjct: 73  NILLKIFSKNSQFIDTFSLFYRMKQSEYALSDKYTYPLLIKVCSNELRLKEGEIVHGSAI 132

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +CG   D++V +SLI  Y KC    +  A+K+F  + ER++VSW +M+AG    G+L  A
Sbjct: 133 RCGVSDDVYVGSSLISFYGKCK--EILSARKVFDEIPERNVVSWTAMVAGYASVGDLENA 190

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           +R+F+ MPER+  SWN ++ G  KAG+++ A ++F+++  RN+VS++ M+ GY+K GDM 
Sbjct: 191 KRVFERMPERNLPSWNAMISGLGKAGDLSGARKVFDEMVERNVVSFTVMIDGYAKVGDMA 250

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ LFD  P K +V W+ +ISGY+      EA +++ +M    +KPD+  ++S+++AC+
Sbjct: 251 SARALFDEAPEKDVVAWSALISGYSRNEQPNEAVKIFFEMVSMNVKPDEFIMVSLMSACS 310

Query: 323 ESGLLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           + G   L   V + +++        +V  AL+DM+AKCG+++ A+ +F  M  +DL+   
Sbjct: 311 QLGNSDLAKWVDSYLSQTSIDTRQAHVLAALIDMHAKCGNMEKAVKLFQDMPSRDLIPCC 370

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +++ GL++HG+G +A+ LF+RM DEG  PD   F  +L AC+  G I+ G  +F +M+  
Sbjct: 371 SLIQGLSIHGRGVEAVELFNRMLDEGLIPDTVAFTVILTACSRGGLIEDGWHFFDTMKNK 430

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y ++P   HY CM+DLL R+G+L+ A  L++SMP++P+A  WG LLGAC+ H  VEL EE
Sbjct: 431 YSVVPSPNHYACMVDLLSRAGQLRAAYDLLKSMPLKPHACAWGALLGACKLHGDVELREE 490

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
           V + L+ L+    G+Y +LSNI+A+   W  V+ VR +MK+   +K  G S +
Sbjct: 491 VANRLLELEPEKAGSYVLLSNIYASANQWLDVSIVRDEMKERGIRKIPGCSYI 543


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 326/560 (58%), Gaps = 34/560 (6%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +IK +  +D ++  + IS+ +    + LA   F ++Q+P+V ++N LIR CV    + QA
Sbjct: 1   MIKTNTTQDCFLVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQA 60

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
              ++ M    V   ++++  L+KAC         + +H  ++K G+   +FV  +LI+ 
Sbjct: 61  LVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEF 120

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           YS  G VG S                                 RR+FD+MPERD  +W T
Sbjct: 121 YSTFGDVGGS---------------------------------RRVFDDMPERDVFAWTT 147

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++  + + G+M  A  LF+++P +N+ +W+ M+ GY K G+ E A+ LF++MPA+ ++ W
Sbjct: 148 MISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFLFNQMPARDIISW 207

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           T +++ Y+     KE   L+  + + G+ PD+ T+ ++++ACA  G L LG +VH  +  
Sbjct: 208 TTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVISACAHLGALALGKEVHLYLVL 267

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
             F  +  + ++L+DMYAKCGS+D A+ VF  +  K+L  WN ++ GLA HG  E+AL +
Sbjct: 268 QGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDGLATHGYVEEALRM 327

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F  M+ +   P+  TF+ +L ACTHAGFI++G ++F SM +DY I PQVEHYGCM+DLL 
Sbjct: 328 FGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLS 387

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           ++G L++AL ++++M VEPN+ IWG LL  C+ H  +E+A   +  L+ L+ S+ G+Y++
Sbjct: 388 KAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSL 447

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPS-GASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           L N++A    WN+VA +R  MK    +K   G+S VE++  VH F+  D  HP   Q++ 
Sbjct: 448 LVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINKTVHLFAASDTYHPSYSQLHL 507

Query: 579 MINTLGKDLKPVGHAAKLSA 598
           ++  L   L+  G+  +L +
Sbjct: 508 LLAELDDQLRLAGYVPELGS 527



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 76/170 (44%), Gaps = 16/170 (9%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L +   L+  +   DL  D YI   LI   A C  + +A+ VF  +Q  ++  +N +I  
Sbjct: 257 LGKEVHLYLVLQGFDL--DVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFCWNCIIDG 314

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
              +    +A R+F +M+ K +  +  T+  +L AC        G+ WF  +   + +  
Sbjct: 315 LATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYCIAP 374

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           +  ++G       ++D  SK G++  +L     M++     + W +++ G
Sbjct: 375 QVEHYG------CMVDLLSKAGLLEDALEMIRNMTVEPNSFI-WGALLNG 417


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/446 (42%), Positives = 282/446 (63%), Gaps = 2/446 (0%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+   N++I  Y++ G   +S A++LF     RD+ +W +M+   V+ G L EARR+FDE
Sbjct: 218 DLISWNTMISGYAQDG--DLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDE 275

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MP++  +S+N ++ GYA+   M++  ELFE++P  NI SW+ M+ GY ++GD+  A+ LF
Sbjct: 276 MPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGDLAQARNLF 335

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D MP +  V W  II+GYA+ G+ +EA  +  +M+  G   +  T    L+ACA+   L 
Sbjct: 336 DMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALE 395

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           LG +VH  + +  ++    V NALV MY KCG +D A  VF G+  KD+VSWN ML G A
Sbjct: 396 LGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYA 455

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG G +AL +F  M   G  PD+ T VGVL AC+H G  D+G +YF+SM +DYGI P  
Sbjct: 456 RHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNS 515

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           +HY CMIDLLGR+G L+EA  L+++MP EP+A  WG LLGA R H  +EL E+  + + +
Sbjct: 516 KHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFK 575

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           ++  + G Y +LSN++AA+G W  V+ +RL+M++   QK  G S VEV N++H F+V D 
Sbjct: 576 MEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDC 635

Query: 569 LHPKSEQIYQMINTLGKDLKPVGHAA 594
            HP+  +IY  +  L   +K  G+ +
Sbjct: 636 FHPEKGRIYAFLEELDLKMKHEGYVS 661



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 233/482 (48%), Gaps = 23/482 (4%)

Query: 48  DPYIA--PKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           DP+     K IS+        LA+ VF+ +   +   YN +I   ++N+     F +  D
Sbjct: 30  DPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNA----KFSLARD 85

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           + +K    D F++  +L            +M+   + +     D+   N+++  Y + G 
Sbjct: 86  LFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPE----KDVVSWNAMLSGYVRSG- 140

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
             V  A+ +F  M  ++ +SWN ++A  V+ G L EARRLF+   + + +S N ++ GY 
Sbjct: 141 -HVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYV 199

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           K   +  A +LF++IP R+++SW+TM+ GY++DGD+  A+ LF+  P + +  WT ++  
Sbjct: 200 KRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYA 259

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y + GM  EA R++D+M +      + +   ++A  A+   + +G ++     +  F  N
Sbjct: 260 YVQDGMLDEARRVFDEMPQ----KREMSYNVMIAGYAQYKRMDMGREL---FEEMPFP-N 311

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
               N ++  Y + G L  A ++F+ M ++D VSW A++ G A +G  E+A+ +   MK 
Sbjct: 312 IGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKR 371

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
           +G   ++ TF   L AC     ++ G Q    + R  G          ++ +  + G + 
Sbjct: 372 DGESLNRSTFCCALSACADIAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYCKCGCID 430

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           EA  + Q +    + + W T+L    +H     A  V + +I   G  P   TM+  + A
Sbjct: 431 EAYDVFQGVQ-HKDIVSWNTMLAGYARHGFGRQALTVFESMI-TAGVKPDEITMVGVLSA 488

Query: 526 AT 527
            +
Sbjct: 489 CS 490



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 174/355 (49%), Gaps = 25/355 (7%)

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
           I+  ++ G    A  +FD MP R++VS+N ++ GY +  + +LA +LF+K+PH+++ SW+
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMPHKDLFSWN 99

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            M+ GY+++  +  A++LFD MP K +V W  ++SGY   G   EA  ++D+M       
Sbjct: 100 LMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSIS 159

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
            +G    +LAA   SG L    ++  S + +        CN L+  Y K   L +A  +F
Sbjct: 160 WNG----LLAAYVRSGRLEEARRLFESKSDWELIS----CNCLMGGYVKRNMLGDARQLF 211

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           + +  +DL+SWN M+ G A  G   +A  LF    +E    D +T+  ++ A    G +D
Sbjct: 212 DQIPVRDLISWNTMISGYAQDGDLSQARRLF----EESPVRDVFTWTAMVYAYVQDGMLD 267

Query: 430 KGVQYFYSMERDYGILPQVEH--YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +  + F  M       PQ     Y  MI    +  R+     L + MP  PN   W  ++
Sbjct: 268 EARRVFDEM-------PQKREMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMI 319

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
               ++  +  A  + D + +    D  ++  +   +A  G + +  N+ ++MK+
Sbjct: 320 SGYCQNGDLAQARNLFDMMPQ---RDSVSWAAIIAGYAQNGLYEEAMNMLVEMKR 371



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 131/312 (41%), Gaps = 26/312 (8%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRD-------PYIAPKLISSLALCRQ-- 64
           RR+ +E  Q      N+      +AQ  ++D+ R+       P I    I     C+   
Sbjct: 270 RRVFDEMPQKREMSYNVMIAG--YAQYKRMDMGRELFEEMPFPNIGSWNIMISGYCQNGD 327

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  A  +F+ +   D   +  +I    QN L  +A  + ++M+  G   +  T+   L A
Sbjct: 328 LAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSA 387

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C       L + +H  + + GY     V N+L+  Y KCG   +  A  +F  +  +DIV
Sbjct: 388 CADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGC--IDEAYDVFQGVQHKDIV 445

Query: 185 SWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           SWN+M+AG  + G   +A  +F+ M     + D ++   +L   +  G  +   E F  +
Sbjct: 446 SWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSM 505

Query: 241 PHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKG---M 291
                   N   ++ M+    + G +E A+ L   MP +     W  ++      G   +
Sbjct: 506 NKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMEL 565

Query: 292 AKEAARLYDQME 303
            ++AA +  +ME
Sbjct: 566 GEQAAEMVFKME 577



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 82/221 (37%), Gaps = 51/221 (23%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+  Q+++   ++   +   L+     C  +  A  VF  +Q  D+  +NT++    ++
Sbjct: 398 KQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARH 457

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGY 146
               QA  VF  M   GV  D  T   +L AC+       G  +FH +   + +      
Sbjct: 458 GFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGI------ 511

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
                 PNS    +  C                         MI  L + G L EA+ L 
Sbjct: 512 -----TPNS---KHYAC-------------------------MIDLLGRAGCLEEAQNLI 538

Query: 207 DEMP-ERDAVSWNTILDGYAKAGEMNLAFE----LFEKIPH 242
             MP E DA +W  +L      G M L  +    +F+  PH
Sbjct: 539 RNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPH 579


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/552 (38%), Positives = 312/552 (56%), Gaps = 43/552 (7%)

Query: 54  KLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113
           KLI+S   C  +  A++VF D++      +N+++ A  +   + +  R    + EK    
Sbjct: 46  KLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYAR---QLFEKIPQP 102

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           +  +Y  +L AC+   W HL                                 GV  A+ 
Sbjct: 103 NTVSYNIML-ACH---WHHL---------------------------------GVHDARG 125

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
            F SM  +D+ SWN+MI+ L + G + EARRLF  MPE++ VSW+ ++ GY   G+++ A
Sbjct: 126 FFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAA 185

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            E F   P R++++W+ M+ GY K G +E+A+ LF  M  +TLV W  +I+GY E G A+
Sbjct: 186 VECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAE 245

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           +  RL+  M E G+KP+  +L S+L  C+    L LG +VH  + K     +T    +LV
Sbjct: 246 DGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLV 305

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
            MY+KCG L +A  +F  + +KD+V WNAM+ G A HG G+KAL LF  MK EG  PD  
Sbjct: 306 SMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWI 365

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           TFV VL AC HAG +D GVQYF +M RD+GI  + EHY CM+DLLGR+G+L EA+ L++S
Sbjct: 366 TFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKS 425

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP +P+  I+GTLLGACR H  + LAE     L+ L  +    Y  L+N++AA   W+ V
Sbjct: 426 MPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHV 485

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           A++R  MK     K  G S +E+++ VH F   D+LHP+   I++ +  L K +K  G+ 
Sbjct: 486 ASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYV 545

Query: 594 AKLS---AEIGE 602
             L     ++GE
Sbjct: 546 PDLEFVLHDVGE 557



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 16/347 (4%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA-KAGEMNLAFELFEKI 240
           ++++ N +IA  V+ G++  A R+F++M  +  V+WN+IL  +A K G    A +LFEKI
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P  N VS++ M+  +     +  A+  FD MP K +  W  +IS  A+ G+  EA RL+ 
Sbjct: 100 PQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFS 159

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAK 358
            M E         ++S   AC +         + A++  +      +V    A++  Y K
Sbjct: 160 AMPEKNC-VSWSAMVSGYVACGD---------LDAAVECFYAAPMRSVITWTAMITGYMK 209

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
            G ++ A  +F  M+ + LV+WNAM+ G   +G+ E  L LF  M + G  P+  +   V
Sbjct: 210 FGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSV 269

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L  C++   +  G Q  + +     +         ++ +  + G LK+A  L   +P   
Sbjct: 270 LLGCSNLSALQLGKQ-VHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RK 327

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           + + W  ++    +H A + A  + D  ++ +G  P   T ++ + A
Sbjct: 328 DVVCWNAMISGYAQHGAGKKALRLFD-EMKKEGLKPDWITFVAVLLA 373



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 3/103 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     KQ+   + K  L  D      L+S  + C  +  A ++F  I   DV  +
Sbjct: 273 CSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCW 332

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           N +I    Q+    +A R+F +M+++G+  D  T+  +L ACN
Sbjct: 333 NAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACN 375


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/567 (36%), Positives = 331/567 (58%), Gaps = 10/567 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K + + I+    + D  +   L+   A C       +VF  + + D+  +NT+I    + 
Sbjct: 365 KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 424

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  ++  MQ +G+  +  TY  LL AC      H  + IH+ + K G+  DI V 
Sbjct: 425 GNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQ 484

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           N+LI  Y++CG   +  A+ LF  M  +DI+SW +MI GL K G  +EA  +F +M +  
Sbjct: 485 NALISMYARCG--SIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAG 542

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAK 265
              + V++ +IL+  +    ++    + +++    + +     +T+V  YS  G ++ A+
Sbjct: 543 LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDAR 602

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FDRM  + +V +  +I GYA   + KEA +L+D+++E GLKPD  T I++L ACA SG
Sbjct: 603 QVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSG 662

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L    ++H+ + K  +  +T++ NALV  YAKCGS  +A+ VF+ M K++++SWNA++ 
Sbjct: 663 SLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIG 722

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G A HG+G+  L LF RMK EG  PD  TFV +L AC+HAG +++G +YF SM RD+GI 
Sbjct: 723 GCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGIT 782

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P +EHYGCM+DLLGR+G+L E   L+++MP + N  IWG LLGACR H  V +AE   + 
Sbjct: 783 PTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAES 842

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
            ++L   +   Y  LS+++AA G W+  A +R  M++    K  G S +EV +++H F  
Sbjct: 843 SLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVA 902

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D+ HP+SE+IY  ++ L   +K  G+
Sbjct: 903 EDRSHPESEKIYAELDKLTHAMKMEGY 929



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 145/517 (28%), Positives = 270/517 (52%), Gaps = 20/517 (3%)

Query: 24  LHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  CK+   L   +++  + +K  L  D  +A  +++  A C  +  A +VF+ ++   V
Sbjct: 251 LSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSV 310

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I        +  AF +F  MQ++GV  +  TY  +L A +G       + +H+ 
Sbjct: 311 VSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSH 370

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I   G+  D+ V  +L+  Y+KCG       +++F  +  RD+++WN+MI GL +GG   
Sbjct: 371 ILNAGHESDLAVGTALVKMYAKCG--SYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWE 428

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMV 252
           EA  ++ +M       + +++  +L+       ++   E+  ++       +I   + ++
Sbjct: 429 EASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALI 488

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y++ G ++ A+LLF++M  K ++ WT +I G A+ G+  EA  ++  M++AGLKP+  
Sbjct: 489 SMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRV 548

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T  SIL AC+    L  G ++H  + +     + +V N LV+MY+ CGS+ +A  VF+ M
Sbjct: 549 TYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM 608

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
           T++D+V++NAM+ G A H  G++AL LF R+++EG  PDK T++ +L AC ++G ++   
Sbjct: 609 TQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAK 668

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +  +S+    G L        ++    + G   +AL +   M ++ N I W  ++G C +
Sbjct: 669 E-IHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKM-MKRNVISWNAIIGGCAQ 726

Query: 493 HNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           H      ++VL    R+K  G  P   T +S + A +
Sbjct: 727 HGR---GQDVLQLFERMKMEGIKPDIVTFVSLLSACS 760



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 136/531 (25%), Positives = 256/531 (48%), Gaps = 26/531 (4%)

Query: 21  LQNLHKC---KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           ++ L +C   K+L   +++   II+     D Y    LI+    C  +  A +V+N +  
Sbjct: 145 MKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNH 204

Query: 78  PD--VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            +  VH +N ++   VQ     +A ++  +MQ+ G+     T   LL +C   +     +
Sbjct: 205 TERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGR 264

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IH    K     D+ V N +++ Y+KCG   +  A+++F  M  + +VSW  +I G   
Sbjct: 265 EIHVEAMKARLLFDVNVANCILNMYAKCG--SIHEAREVFDKMETKSVVSWTIIIGGYAD 322

Query: 196 GGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVS 247
            G    A  +F +M +     + +++  +L+ ++    +     +   I       ++  
Sbjct: 323 CGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAV 382

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + +V  Y+K G  +  + +F+++  + L+ W  +I G AE G  +EA+ +Y QM+  G+
Sbjct: 383 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGM 442

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            P+  T + +L AC     L  G ++H+ + K  F  + +V NAL+ MYA+CGS+ +A  
Sbjct: 443 MPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARL 502

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           +FN M +KD++SW AM+ GLA  G G +AL +F  M+  G  P++ T+  +L AC+    
Sbjct: 503 LFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAA 562

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +D G +  +    + G+         ++++    G +K+A ++   M  + + + +  ++
Sbjct: 563 LDWG-RRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRM-TQRDIVAYNAMI 620

Query: 488 GACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATG--DWNK 532
           G    HN   L +E L    RL+      D   Y  + N  A +G  +W K
Sbjct: 621 GGYAAHN---LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAK 668



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 194/381 (50%), Gaps = 15/381 (3%)

Query: 24  LHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ C N   L+  +++ ++++K     D  +   LIS  A C  +  A  +FN +   D+
Sbjct: 453 LNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDI 512

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I    ++ L A+A  VF DMQ+ G+  +  TY  +L AC+        + IH  
Sbjct: 513 ISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQ 572

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G   D  V N+L++ YS CG   V  A+++F  M +RDIV++N+MI G        
Sbjct: 573 VIEAGLATDAHVANTLVNMYSMCG--SVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGK 630

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MV 252
           EA +LFD + E     D V++  +L+  A +G +  A E+   +     +S ++    +V
Sbjct: 631 EALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALV 690

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G    A L+FD+M  + ++ W  II G A+ G  ++  +L+++M+  G+KPD  
Sbjct: 691 STYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIV 750

Query: 313 TLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T +S+L+AC+ +GLL  G +   S+++ +           +VD+  + G LD   ++   
Sbjct: 751 TFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKT 810

Query: 372 MT-KKDLVSWNAMLYGLAMHG 391
           M  + +   W A+L    +HG
Sbjct: 811 MPFQANTRIWGALLGACRIHG 831



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 178/414 (42%), Gaps = 76/414 (18%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++  Q+I+  L  D ++A  L++  ++C  +  A +VF+ +   D+  YN +I  
Sbjct: 563 LDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGG 622

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              ++L  +A ++F  +QE+G+  D  TY  +L AC         + IH+L+ K GY  D
Sbjct: 623 YAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSD 682

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             + N+L+ +Y+KCG    S A  +F  M +R+++SWN++I G  + G   +  +LF+ M
Sbjct: 683 TSLGNALVSTYAKCG--SFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERM 740

Query: 210 P----ERDAVSWNTILDGYAKAG----------EMNLAFELFEKIPHRNIVSWSTMVWGY 255
                + D V++ ++L   + AG           M+  F +   I H     +  MV   
Sbjct: 741 KMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEH-----YGCMVDLL 795

Query: 256 SKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            + G ++  + L   MP  A T + W  ++      G    A R      E+ LK D   
Sbjct: 796 GRAGQLDEVEALIKTMPFQANTRI-WGALLGACRIHGNVPVAER----AAESSLKLDPD- 849

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF---- 369
                                          N  V  AL  MYA  G  D+A  +     
Sbjct: 850 -------------------------------NAAVYVALSHMYAAAGMWDSAAKLRKLME 878

Query: 370 -NGMTKKDLVSW----NAMLYGLA---MHGQGEKALG----LFSRMKDEGFGPD 411
             G+TK+   SW    + + Y +A    H + EK       L   MK EG+ PD
Sbjct: 879 QRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPD 932



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 126/277 (45%), Gaps = 9/277 (3%)

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           +++ G + +    + +L  C E   L  G +VH  I ++    +    NAL++MY +CGS
Sbjct: 132 LQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGS 191

Query: 362 LDNAMSVFNGM--TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           ++ A  V+N +  T++ + SWNAM+ G   +G  E+AL L   M+  G    + T + +L
Sbjct: 192 IEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLL 251

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            +C     ++ G +      +   +L  V    C++++  + G + EA  +   M  + +
Sbjct: 252 SSCKSPSALECGREIHVEAMKAR-LLFDVNVANCILNMYAKCGSIHEAREVFDKMETK-S 309

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG----DWNKVAN 535
            + W  ++G        E+A E+   + + +G  P   T ++ + A +G     W K  +
Sbjct: 310 VVSWTIIIGGYADCGHSEIAFEIFQKM-QQEGVVPNRITYINVLNAFSGPAALKWGKTVH 368

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
             +      +    G + V++  +   +  C Q+  K
Sbjct: 369 SHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEK 405


>gi|326504202|dbj|BAJ90933.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 634

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/617 (33%), Positives = 332/617 (53%), Gaps = 56/617 (9%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS----------LALCRQMGLAIK 70
           L+ L +C+++    QL A ++         + P+L++S          +ALC     A +
Sbjct: 7   LELLQQCRSIRHLDQLHAHLLAHGPSAVASVVPQLVASYCALSGRAGDVALCH----ARR 62

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ + DPD   YN+LIRA   +    +A  +  D+  +G+  + FT PF+LKAC+    
Sbjct: 63  MFDRVPDPDRFAYNSLIRAYSNSGCPQEALCLHRDVLRRGILPNEFTLPFVLKACSRARA 122

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSM 189
                  H +  K GY   +FV N+L+ S +  G +  S  ++LF  M   R++VSWN+M
Sbjct: 123 AEHALATHGVAIKLGYVRQVFVGNALLHSSASAGSLRDS--RRLFAEMAPHRNVVSWNTM 180

Query: 190 IAGLVKGGELSEARRLFDEMPER------------------------------------- 212
           I G  + GE SEA  LF EM  +                                     
Sbjct: 181 IGGCAQAGETSEACALFREMRRQGVLADVFTFVSLLLVCSKEGNLEVGRLVHCHMLASGS 240

Query: 213 --DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
             D +  N ++D Y K G++ +A   F+ +P +N+VSW++M+   +K G ++ A+  F++
Sbjct: 241 RVDLILGNALVDMYGKCGDLWMAHRCFDVMPIKNVVSWTSMLCALAKHGSVDAARDWFEQ 300

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP + ++ W  +IS Y + G   E   LY++M+  GL PD+ TL  +L+   ++G L  G
Sbjct: 301 MPERNIISWNAMISCYVQGGRFPETLGLYNRMKSLGLTPDEVTLAGVLSVHGQNGDLASG 360

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             +H  I          V N+L+DMYA+CG +D ++S+F  M  K+ +SWN ++  LAMH
Sbjct: 361 RMIHCYIQDSFSDPGVTVLNSLIDMYARCGQVDTSISLFTEMPNKNTISWNVIIGALAMH 420

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G+ ++A+  F  M  + F PD+ TFVG+L AC+H G ++ G  YF +M   Y + P+VEH
Sbjct: 421 GRAQEAVMFFRAMVSDAFSPDEITFVGLLSACSHGGLLEDGQYYFKAMRHIYNVKPEVEH 480

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           Y CM+DLLGR G L +A+ L++ MP++P+ ++WG L+GACR H  VE+ +  +  L+ L+
Sbjct: 481 YACMVDLLGRHGHLAKAVDLIKDMPMKPDVVVWGALIGACRIHGHVEIGKLAIKQLLELE 540

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
           G + G + ++SN+   T  W  +  +R  M+    +K  G SS+E++N +HEF V D  H
Sbjct: 541 GINGGLFVLISNLLYETRQWEDMKRLRKLMRDRGTKKDMGVSSIEINNSIHEFGVEDIRH 600

Query: 571 PKSEQIYQMINTLGKDL 587
             S QIY  ++ L   L
Sbjct: 601 ESSSQIYAAVDQLAYHL 617


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 330/580 (56%), Gaps = 44/580 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA---LCRQMGL--AIKVFNDI 75
           L N     +L+  KQ  A I++    +D YIA  L+ S A     R +    +++VF+ +
Sbjct: 38  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 97

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           + P+V L+N +I+ C++N+   +A  ++ +M       + +TYP +LKAC+         
Sbjct: 98  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGV 157

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +HA + K G  GD  + +S I  Y+  G                               
Sbjct: 158 QVHAHLVKHGLGGDGHILSSAIRMYASFG------------------------------- 186

Query: 196 GGELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-WSTMVW 253
              L EARR+ D+   E DAV WN ++DGY + GE+  A ELFE +P R+++S W+ M+ 
Sbjct: 187 --RLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMIS 244

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           G+S+ G +E+A+  FD M  +  + W+ +I GY ++G   EA  ++ QM++  ++P    
Sbjct: 245 GFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFV 304

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S+L+ACA  G L  G  +H    +   + +  +  +LVDMYAKCG +D A  VF  M+
Sbjct: 305 LPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS 364

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K++ SWNAM+ GLAMHG+ E A+ LFS+M      P++ TFVGVL AC H G + KG+ 
Sbjct: 365 NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---INPNEITFVGVLNACAHGGLVQKGLT 421

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F SM ++YG+ PQ+EHYGC++DLLGR+G L EA ++V S+P EP   +WG LLGACRKH
Sbjct: 422 IFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 481

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             VEL E V   L+ L+  + G YT+LSNI+A  G W +V  VR  MK+   +   G S 
Sbjct: 482 GNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 541

Query: 554 VEVDN-EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +++   EVH+F + D  HP+ + IYQM++ + + L+  G+
Sbjct: 542 IDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 581


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 335/569 (58%), Gaps = 21/569 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  NL+  + LF Q+     ++D      ++S  A    +  A K+F+ +   +   +N 
Sbjct: 134 KNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT---YPFLLKACNGKNWFHLVQMIHALIY 142
           L+ A VQN     A R+F    +  + + N     Y    +  + ++ F  + +   + +
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                      N +I  Y++ G++  S A++LF  +  RD+ +W +M++G V+ G L EA
Sbjct: 250 -----------NIMITGYAQNGLL--SEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEA 296

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
            R+F+EMPE++ VSWN ++ GY ++ ++  A ELF+++P RN  SW+TMV GY++ G+++
Sbjct: 297 TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNID 356

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            AK+LFD MP +  + W  +ISGYA+ G ++EA  L+ +M+  G   +   L   L++CA
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           E   L LG ++H  + K  F+      NAL+ MY KCGS++ A  VF  +T+KD+VSWN 
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG G++AL LF  MK     PD  T VGVL AC+H GF+DKG++YF SM ++Y
Sbjct: 477 MIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNY 535

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI    +HY CMIDLLGR+GRL EAL L++SMP  P+A  WG LLGA R H   EL E+ 
Sbjct: 536 GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA 595

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + +  ++  + G Y +LSN++AA+G W +V  +R +M+    +K  G S VE+ N+ H 
Sbjct: 596 AEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHI 655

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           F+V D  HP++E+IY  +  L  +LK  G
Sbjct: 656 FTVGDCSHPEAERIYAYLEELDLELKKDG 684



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 147/576 (25%), Positives = 258/576 (44%), Gaps = 81/576 (14%)

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           I D D+  +N  I A ++      A  VF  M+ +   T    Y  ++      N F   
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVT----YNAMISGYLSNNKFDCA 110

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +   +       D+   N ++  Y K G   +S A+ LF  M E+D+VSWN+M++G  
Sbjct: 111 RKVFEKMPD----RDLISWNVMLSGYVKNG--NLSAARALFNQMPEKDVVSWNAMLSGFA 164

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           + G + EAR++FD+M  ++ +SWN +L  Y + G +  A  LF+      IVSW+ ++ G
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG 224

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y +   ++ A+ LFDRMP +  + W I+I+GYA+ G+  EA RL++++       D    
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP----IRDVFAW 280

Query: 315 ISILAACAESGLLGLGMKV---------------------HASINKYRF------KCNTN 347
            ++++   ++G+L    ++                        I K R         NT+
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS 340

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
             N +V  YA+CG++D A  +F+ M ++D +SW AM+ G A  GQ E+AL LF +MK +G
Sbjct: 341 SWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400

Query: 408 FGPDKYTFVGVLCACT-----------HAGFIDKGVQYFY--------------SMERDY 442
              ++      L +C            H   +  G Q  Y              S+E  +
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAF 460

Query: 443 GILPQVEH-----YGCMIDLLGRSGRLKEALRLVQS--MPVEPNAIIWGTLLGACRKHNA 495
            +   +       +  MI    R G  KEAL L +S  M ++P+ +    +L AC     
Sbjct: 461 DVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGF 520

Query: 496 VELAEEVLDCLIRLKG--SDPGNYTMLSNIFAATGDWNKVANVRLQM----KKTRAQKPS 549
           V+   E  + + +  G  ++  +YT + ++    G  ++  N+   M             
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580

Query: 550 GASSVEVDNEVHEFSV--CDQLHPKSEQIYQMINTL 583
           GAS +  D E+ E +     ++ P +  +Y +++ L
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNL 616


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 331/594 (55%), Gaps = 53/594 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA------LCRQMGLAIKVFN- 73
           +Q L +CK      ++ A++I   L ++  ++ +++ + A      L     L  + ++ 
Sbjct: 19  IQLLGRCKTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHV 78

Query: 74  -------DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
                  +++DP   L+N +I++        QA  +F  M E GV  D F+   +LKAC+
Sbjct: 79  CSSSPGGEVEDP--FLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACS 136

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
              +      IH ++ K G   D+F+ N LI  Y KCG +G   A+++F  M +RD VS+
Sbjct: 137 RLGFVKGGLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLG--FARQIFDRMPQRDSVSF 194

Query: 187 NSMIAGLVKGGELSEARRLFD----------------------------------EMPER 212
           NSMI G VK G +  AR LFD                                  EMPE+
Sbjct: 195 NSMIDGYVKRGLIESARELFDLMPREVKNLISWNSIISGYAQTSDGVDIASNLFAEMPEK 254

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           D +SWN+++DGY K G +  A +LF+ +P R++V+W+TM+ GY+K G +  AK LFD+MP
Sbjct: 255 DLISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMP 314

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGM 331
            + +V +  +++GY +     EA  ++  ME E+ L PD+ TL+ +L+A A+ G L   M
Sbjct: 315 HRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAM 374

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
            +H  I + +F     +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+HG
Sbjct: 375 DMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHG 434

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            GE A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HY
Sbjct: 435 LGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 494

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           GCM+D+L RSG ++ A  L+Q MP+EPN +IW T L AC  H   E  E V   LI   G
Sbjct: 495 GCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVGKHLILQAG 554

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
            +P +Y +LSN++A+ G W  V  +R  MK+ + +K  G S +E+D  VHEF V
Sbjct: 555 YNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWIELDGRVHEFFV 608


>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 518

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/536 (38%), Positives = 316/536 (58%), Gaps = 42/536 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--------RQMGLAIKVFNDIQDPDV 80
           N+   KQ+ A +I   L  +     KL+ + A+           +  A+++F  I  PD 
Sbjct: 13  NVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDT 72

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            ++NT IR   Q+     A  ++  M ++ V  DNFT+PF+LKAC    W +    +H  
Sbjct: 73  FMWNTYIRGSSQSHDPVHAVALYAQMDQRSVKPDNFTFPFVLKACTKLFWVNTGSAVHGR 132

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G+  ++ V N+L+  ++KCG                                 +L 
Sbjct: 133 VLRLGFGSNVVVRNTLLVFHAKCG---------------------------------DLK 159

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            A  +FD+  + D V+W+ ++ GYA+ G++++A +LF+++P R++VSW+ M+  Y+K G+
Sbjct: 160 VATDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGE 219

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ME A+ LFD  P K +V W  +I GY  + + +EA  L+D+M   G  PD+ T++S+L+A
Sbjct: 220 MESARRLFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEMCGVGECPDEVTMLSLLSA 279

Query: 321 CAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           CA+ G L  G KVHA I +  + K +T + NALVDMYAKCG++  A+ VF  +  KD+VS
Sbjct: 280 CADLGDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVFWLIRDKDVVS 339

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+++ GLA HG  E++LGLF  MK     PD+ TFVGVL AC+HAG +D+G +YF+ M+
Sbjct: 340 WNSVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMK 399

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             Y I P + H GC++D+LGR+G LKEA   + SM +EPNAI+W +LLGAC+ H  VELA
Sbjct: 400 NKYKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIEPNAIVWRSLLGACKVHGDVELA 459

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +   + L+R++G   G+Y +LSN++A+ G+W+   NVR  M      K  G+S VE
Sbjct: 460 KRANEQLLRMRGDQSGDYVLLSNVYASQGEWDGAENVRKLMDDNGVTKNRGSSFVE 515


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 332/574 (57%), Gaps = 16/574 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLIS--SLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++Q KQ+ AQ+++  L  DP+ A K+++  SL     +  A  VF+ I +P  +  N++I
Sbjct: 1   MSQLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           R C   +L+ +A   + +M  +G+  D +T+P L K+C   +     + IH    K G+ 
Sbjct: 61  RGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSEG---KQIHCHSTKLGFA 117

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D +  N+L++ YS CG + VS A+K+F  M ++ +VSW +MI    +  + +EA RLFD
Sbjct: 118 SDTYAQNTLMNMYSNCGCL-VS-ARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFD 175

Query: 208 EMPERDAVSWN-----TILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKD 258
            M + + V  N      +L   A+A ++ +   + E I      R++V  + ++  Y K 
Sbjct: 176 RMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKC 235

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +++A+ LFD+   K L  W I+I+G+ E    +EA  L+ +M+  G+K D  T+ S+L
Sbjct: 236 GCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLL 295

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            AC   G L LG  +HA I K R   +  +  ALVDMYAKCGS++ A+ VF+ M +KD++
Sbjct: 296 LACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVM 355

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +W A++ GLAM GQ E AL  F  M  +G  PD  TFVGVL AC+HAGF+D+G+ +F SM
Sbjct: 356 TWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSM 415

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
              YGI P +EHYG ++D+LGR+GR+ EA  L++SMP+ P+  + G LLGACR H  +E 
Sbjct: 416 SDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEA 475

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE     L+ +     G Y +LSNI+ ++  W +    R  M +   +KP G S +EV  
Sbjct: 476 AERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHG 535

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            VHEF   D  H +S +I +M+  +   LK  G+
Sbjct: 536 VVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGY 569



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/381 (29%), Positives = 178/381 (46%), Gaps = 13/381 (3%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C+N ++ KQ+     KL    D Y    L++  + C  +  A KVF+ ++D  V  + T+
Sbjct: 98  CRNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATM 157

Query: 87  IRACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           I    Q     +A R+F   M+ + V  +  T   +L AC       +V+ IH  I + G
Sbjct: 158 IGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHG 217

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +   + +   L+D Y KCG   V LA+ LF    E+++ SWN MI G V+     EA  L
Sbjct: 218 FGRHVVLNTVLMDVYCKCGC--VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLL 275

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI---VSWST-MVWGYSK 257
           F EM  +    D V+  ++L      G + L   L   I  + I   V+  T +V  Y+K
Sbjct: 276 FREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAK 335

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +E A  +F  MP K ++ WT +I G A  G A+ A + +D+M   G+KPD  T + +
Sbjct: 336 CGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGV 395

Query: 318 LAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKK 375
           LAAC+ +G +  G+    S+ + Y  +        LVD+  + G +  A  +   M    
Sbjct: 396 LAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAP 455

Query: 376 DLVSWNAMLYGLAMHGQGEKA 396
           D      +L    +HG  E A
Sbjct: 456 DQFVLGGLLGACRIHGNLEAA 476



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 14/269 (5%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + ++L   K++   I +    R   +   L+     C  + LA  +F+  Q+ ++  +N 
Sbjct: 199 RARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNI 258

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I   V++S   +A  +F +MQ KG+  D  T   LL AC       L + +HA I K  
Sbjct: 259 MINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQR 318

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D+ +  +L+D Y+KCG   +  A ++F  M E+D+++W ++I GL   G+   A + 
Sbjct: 319 IDVDVALGTALVDMYAKCG--SIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQY 376

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYS 256
           FDEM  +    DA+++  +L   + AG ++     F  +         I  +  +V    
Sbjct: 377 FDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILG 436

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           + G +  A+ L   MP   + P   ++ G
Sbjct: 437 RAGRIAEAEELIKSMP---MAPDQFVLGG 462


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 330/580 (56%), Gaps = 44/580 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA---LCRQMGL--AIKVFNDI 75
           L N     +L+  KQ  A I++    +D YIA  L+ S A     R +    +++VF+ +
Sbjct: 39  LLNTQCTTSLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFV 98

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           + P+V L+N +I+ C++N+   +A  ++ +M       + +TYP +LKAC+         
Sbjct: 99  RKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGV 158

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +HA + K G  GD  + +S I  Y+  G                               
Sbjct: 159 QVHAHLVKHGLGGDGHILSSAIRMYASFG------------------------------- 187

Query: 196 GGELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-WSTMVW 253
              L EARR+ D+   E DAV WN ++DGY + GE+  A ELFE +P R+++S W+ M+ 
Sbjct: 188 --RLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMIS 245

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           G+S+ G +E+A+  FD M  +  + W+ +I GY ++G   EA  ++ QM++  ++P    
Sbjct: 246 GFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFV 305

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S+L+ACA  G L  G  +H    +   + +  +  +LVDMYAKCG +D A  VF  M+
Sbjct: 306 LPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMS 365

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K++ SWNAM+ GLAMHG+ E A+ LFS+M      P++ TFVGVL AC H G + KG+ 
Sbjct: 366 NKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD---IYPNEITFVGVLNACAHGGLVQKGLT 422

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F SM ++YG+ PQ+EHYGC++DLLGR+G L EA ++V S+P EP   +WG LLGACRKH
Sbjct: 423 IFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 482

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             VEL E V   L+ L+  + G YT+LSNI+A  G W +V  VR  MK+   +   G S 
Sbjct: 483 GNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 542

Query: 554 VEVDN-EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +++   EVH+F + D  HP+ + IYQM++ + + L+  G+
Sbjct: 543 IDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGY 582


>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1288

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/562 (38%), Positives = 320/562 (56%), Gaps = 43/562 (7%)

Query: 37   FAQIIKLDLQRDPYIAPKLISSLALCRQMGL-AIKVFNDIQDPDVHLYNTLIRACVQNSL 95
            F+ +IK  L  DP     L+ S AL     L A ++F  I  P +  +N +IR   Q + 
Sbjct: 717  FSNMIKELLPTDPISIFNLLKSYALSPTNILKANELFRQIPRPTLSHWNIMIRGWSQTNQ 776

Query: 96   NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
              +A R +  M  + +F +N TYPFLLKAC   +       +HA + K G+  D+FV N+
Sbjct: 777  PIEAIRNYNLMYSQALFGNNLTYPFLLKACARISNVSCTT-VHARVLKLGFDSDLFVSNA 835

Query: 156  LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----E 211
            LI  Y+  G   +  A+K+F  M ERD+VSWNS+I G  +    SE   +F+EM     +
Sbjct: 836  LIHGYA--GFCELGFARKVFDEMSERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVK 893

Query: 212  RDAVS-------------W----------------------NTILDGYAKAGEMNLAFEL 236
             DAV+             W                      NT++D Y +   ++LA  +
Sbjct: 894  GDAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRV 953

Query: 237  FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
            F+++  RN+VSW+ M+ GY K G++  A+ LFD MP + ++ WT +IS Y++ G   +A 
Sbjct: 954  FDRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAV 1013

Query: 297  RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
            RL+ +M    +KPD+ T+ S+L+ACA  G L +G  VH  I KY    +  V NAL+DMY
Sbjct: 1014 RLFQEMMVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMY 1073

Query: 357  AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
             KCG+++  +SVF  M K+D VSW +++ GLA++G  + AL LFS M  EG  P   TFV
Sbjct: 1074 CKCGAVEKGLSVFEEMGKRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHGTFV 1133

Query: 417  GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            GVL AC HAG +DKG++YF SMER YG+ P+++HYGC++DLL RSG L  A   ++ MP+
Sbjct: 1134 GVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKRMPM 1193

Query: 477  EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
            +P+ ++W  LL A + H  + LAE     L+    S+ GNY + SN +A +  W  V  +
Sbjct: 1194 DPDVVVWRILLSASQVHGNLHLAEIATKKLLETDPSNSGNYILSSNTYAGSNRWEDVIKM 1253

Query: 537  RLQMKKTRAQKPSGASSVEVDN 558
            R  M+++   KPS +SSVE+++
Sbjct: 1254 RRLMEESNVHKPSASSSVEIND 1275


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 326/588 (55%), Gaps = 50/588 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA---IKVFN------- 73
           L  CKN     ++ A++I     ++P +  +++   A  R+  LA     VF+       
Sbjct: 21  LGSCKNSEDVNKIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHEYHVCSN 80

Query: 74  -DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
            D +DP   L+N +I++        +A  +F  M E GV  D F+   +LKAC+   +  
Sbjct: 81  GDFEDP--FLWNAVIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKACSRLGFVK 138

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
               IH  + K G + D+++ N LI  Y KCG +G   A+++F  M  RD VS+NSMI G
Sbjct: 139 EGMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGY--ARQVFDRMPRRDSVSYNSMIDG 196

Query: 193 LVKGGELSEAR----------------------------------RLFDEMPERDAVSWN 218
            VK G +  AR                                  +LFDEMPE+D +SWN
Sbjct: 197 YVKCGMIESARGLFDLMPKEKKNLISWNFMISGYAQRADGVNVAKKLFDEMPEKDLISWN 256

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
           +++DGY K G M  A  LF K+P R++V+W+TMV GY+K G +  AK LFDRMP + +V 
Sbjct: 257 SLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVA 316

Query: 279 WTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
           +  +I+GY +    KEA  +++ ME E+ L PD+ TL+ +L+A A+ G L   + +H  I
Sbjct: 317 YNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYI 376

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
              +F+    +  AL+D Y+KCGS+  +M VF  +  K +  WNAM+ GLA+HG GE A 
Sbjct: 377 MDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAF 436

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +  +++     PD  TF+GVL AC+H+G + +G+  F  M R + I P+++HYGCM+D+
Sbjct: 437 DMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDI 496

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           L RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   L    G +P ++
Sbjct: 497 LSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSF 556

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
            +LSN++A+ G W +V  VR  MK+ + +K  G S +E+D  VHEF V
Sbjct: 557 VLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 604


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/590 (35%), Positives = 331/590 (56%), Gaps = 50/590 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDI----- 75
           L  CKN     ++ A+++     ++P +  +++ + A  R+   +  A  VF++      
Sbjct: 21  LGSCKNSEDVNKIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYXIRSF 80

Query: 76  -----QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
                   D +L+N +I++    +   +A  +F  M E GV  D F+   +LKAC+    
Sbjct: 81  SPGGGDXEDXYLWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKACSRLGL 140

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
                 IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI
Sbjct: 141 VKEGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLG--FARQIFDRMPQRDSVSYNSMI 198

Query: 191 AGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKAGE-MNLAFELFEKIPHRNIVS 247
            G VK G    AR LFD MPE  ++ +SWN+++ GYA+  + +++A +LF ++P ++++S
Sbjct: 199 DGYVKCGSTESARELFDLMPEEMKNLISWNSMISGYAQTSDGVDIASKLFSEMPDKDLIS 258

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM----- 302
           W++M+ GY K G +E AK LFD MP + +V W+ +I GYA+ G   +A  L+DQM     
Sbjct: 259 WNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDV 318

Query: 303 ---------------------------EEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
                                      +E+ L PD+ TL+ +L+A A+ G L   M +H 
Sbjct: 319 VSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHL 378

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            I + +F     +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+HG GE 
Sbjct: 379 YIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAMIGGLAIHGLGES 438

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A  +  +++     PD  TFVG+L AC+H+G + +G+  F  M R + I P+++HYGCM+
Sbjct: 439 AFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMV 498

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           D+L RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI   G +P 
Sbjct: 499 DILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVAKHLIWEAGYNPS 558

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +Y +LSN++A+ G W  V  +R  MK+ + +K  G S +E+D  VHEF V
Sbjct: 559 SYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWIELDGRVHEFFV 608


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/625 (34%), Positives = 332/625 (53%), Gaps = 61/625 (9%)

Query: 24  LHKCKNLNQTKQLFAQI-IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL 82
           L +C++L     + A + I   +        KL+   +    +  A K+F++  +P+  L
Sbjct: 10  LKQCRSLKTLTTIHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFL 69

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +  LI    +N+    AF  F+ M  + +   NFT   +LKA +         +++ L  
Sbjct: 70  WTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRIKDGDLVYGLAV 129

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVG-----------------------------VSLAKK 173
           +CGY  D+ V N +I+ + +CG +G                             V +A+K
Sbjct: 130 RCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARK 189

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW---------------- 217
           LF  M ER+++SW SMI G VK G+L EAR LF+ MPE+D  SW                
Sbjct: 190 LFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAA 249

Query: 218 ---------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
                          N ++ G  KAGEM+ A E F+++  RN+ SW  ++ GY K GD++
Sbjct: 250 RNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVD 309

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ +FD+MP K LV W+ +I GYA+ G    + +LY   +E G+KPD+   + I++AC+
Sbjct: 310 AARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACS 369

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           + G+      V           N  V  +L+DMYAKCG+++ A+ VF  + +KDL  ++ 
Sbjct: 370 QLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQVFEMVDQKDLHCYST 429

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++   A HG  E A+ LFS M+     PD   F+GVL AC H G + +G + F  M  +Y
Sbjct: 430 VITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLVGEGRRLFRQMIDEY 489

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P  +HY CM+D+LGR+G L+EA  L+ SMPV PNA +WG LL ACR H  V+LAE  
Sbjct: 490 GIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLSACRVHLNVQLAEAA 549

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L +++ ++ GNY +L NI+A  G W+  + VR  +++ R +K  G+S +E+ + +HE
Sbjct: 550 ATELFQIEPNNSGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRKNRGSSWIELGSVIHE 609

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDL 587
           F + D+ H  SE+I+ M+  L KD+
Sbjct: 610 FVMGDKSHFDSERIFFMLELLCKDM 634


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/488 (40%), Positives = 298/488 (61%), Gaps = 3/488 (0%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M    V     ++  +L++C       L +  H  I K G+  D+ +   L+D Y+K G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVG- 59

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
             +  AK++FM M  RD+V+ N+MI+ L K G + EAR LFD M ER++ SWN+++  Y 
Sbjct: 60  -DLKCAKRVFMGMPRRDVVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITCYC 118

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM-PAKTLVPWTIIIS 284
           K G++N A  +F+  P +++VSW+ ++ GY K   +  A+ LF  M  A+  V W  +IS
Sbjct: 119 KLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMIS 178

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
            Y + G    A  ++ QM+   +KP + T++S+L+ACA  G L +G  +H  I   R K 
Sbjct: 179 AYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKI 238

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  + NAL+DMY KCG+L+ A+ VF+G+++K++  WN+++ GL M+G+GE+A+  F  M+
Sbjct: 239 DVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVME 298

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            EG  PD  TFVG+L  C+H+G +  G +YF  M   YG+ P VEHYGCM+DLLGR+G L
Sbjct: 299 KEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYL 358

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
           KEAL L+++MP++PN+++ G+LL AC+ H   +L E+V   L+ L   D GNY  LSN++
Sbjct: 359 KEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSNLY 418

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584
           A+   W+ V   R  M K    K  G SS+EV+N VHEF   D  HP+  QI   ++ + 
Sbjct: 419 ASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDEIA 478

Query: 585 KDLKPVGH 592
           K+LK  GH
Sbjct: 479 KELKGQGH 486



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 16/241 (6%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NT+I A VQ      A  +F  MQ + V     T   LL AC       + + IH  I 
Sbjct: 173 WNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIR 232

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                 D+ + N+LID Y KCG +  ++   +F  +  ++I  WNS+I GL   G   EA
Sbjct: 233 TKRLKIDVVLGNALIDMYCKCGALEAAI--DVFHGLSRKNIFCWNSIIVGLGMNGRGEEA 290

Query: 203 RRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI-----PHRNIVSWSTMVW 253
              F  M +     D V++  IL G + +G ++     F ++         +  +  MV 
Sbjct: 291 IAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVD 350

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA--GLKPDD 311
              + G ++ A  L   MP K   P ++++          +  +L +Q+ +    L P D
Sbjct: 351 LLGRAGYLKEALELIRAMPMK---PNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCD 407

Query: 312 G 312
           G
Sbjct: 408 G 408


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 334/569 (58%), Gaps = 21/569 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  NL+  + LF Q+     ++D      ++S  A    +  A K+F+ +   +   +N 
Sbjct: 134 KNGNLSAARALFNQMP----EKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG 189

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT---YPFLLKACNGKNWFHLVQMIHALIY 142
           L+ A VQN     A R+F    +  + + N     Y    +  + ++ F  + +   + +
Sbjct: 190 LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISW 249

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                      N +I  Y++ G++  S A++LF  +  RD+ +W +M++G V+ G L EA
Sbjct: 250 -----------NIMITGYAQNGLL--SEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEA 296

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
            R+F+EMPE++ VSWN ++ GY ++ ++  A ELF+++P RN  SW+TMV GY++ G+++
Sbjct: 297 TRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQCGNID 356

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            AK+LFD MP +  + W  +ISGYA+ G ++EA  L+ +M+  G   +   L   L++CA
Sbjct: 357 QAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCA 416

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           E   L LG ++H  + K  F+      NAL+ MY KCGS++ A  VF  +T+KD+VSWN 
Sbjct: 417 EIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNT 476

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG G++AL LF  MK     PD  T VGVL AC+H G +DKG++YF SM ++Y
Sbjct: 477 MIAGYARHGFGKEALALFESMK-MTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNY 535

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI    +HY CMIDLLGR+GRL EAL L++SMP  P+A  WG LLGA R H   EL E+ 
Sbjct: 536 GITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKA 595

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + +  ++  + G Y +LSN++AA+G W +V  +R +M+    +K  G S VE+ N+ H 
Sbjct: 596 AEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHI 655

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           F+V D  HP++E+IY  +  L  +LK  G
Sbjct: 656 FTVGDCSHPEAERIYAYLEELDLELKKDG 684



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 147/576 (25%), Positives = 258/576 (44%), Gaps = 81/576 (14%)

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           I D D+  +N  I A ++      A  VF  M+ +   T    Y  ++      N F   
Sbjct: 55  IVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVT----YNAMISGYLSNNKFDCA 110

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +   +       D+   N ++  Y K G   +S A+ LF  M E+D+VSWN+M++G  
Sbjct: 111 RKVFEKMPD----RDLISWNVMLSGYVKNG--NLSAARALFNQMPEKDVVSWNAMLSGFA 164

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           + G + EAR++FD+M  ++ +SWN +L  Y + G +  A  LF+      IVSW+ ++ G
Sbjct: 165 QNGFVEEARKIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGG 224

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y +   ++ A+ LFDRMP +  + W I+I+GYA+ G+  EA RL++++       D    
Sbjct: 225 YVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELP----IRDVFAW 280

Query: 315 ISILAACAESGLLGLGMKV---------------------HASINKYRF------KCNTN 347
            ++++   ++G+L    ++                        I K R         NT+
Sbjct: 281 TAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTS 340

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
             N +V  YA+CG++D A  +F+ M ++D +SW AM+ G A  GQ E+AL LF +MK +G
Sbjct: 341 SWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400

Query: 408 FGPDKYTFVGVLCACT-----------HAGFIDKGVQYFY--------------SMERDY 442
              ++      L +C            H   +  G Q  Y              S+E  +
Sbjct: 401 GILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAF 460

Query: 443 GILPQVEH-----YGCMIDLLGRSGRLKEALRLVQS--MPVEPNAIIWGTLLGACRKHNA 495
            +   +       +  MI    R G  KEAL L +S  M ++P+ +    +L AC     
Sbjct: 461 DVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGL 520

Query: 496 VELAEEVLDCLIRLKG--SDPGNYTMLSNIFAATGDWNKVANVRLQM----KKTRAQKPS 549
           V+   E  + + +  G  ++  +YT + ++    G  ++  N+   M             
Sbjct: 521 VDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL 580

Query: 550 GASSVEVDNEVHEFSV--CDQLHPKSEQIYQMINTL 583
           GAS +  D E+ E +     ++ P +  +Y +++ L
Sbjct: 581 GASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNL 616


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/536 (37%), Positives = 317/536 (59%), Gaps = 37/536 (6%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           C NL   KQ+ A +I      +     +LI   ++ +   +  A +VF  I +PD+ ++N
Sbjct: 23  CNNLLALKQIHATLIIKGFNSNRAALRELIFAGAMTISGAINYAHQVFAQITEPDIFMWN 82

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           T++R   Q+   ++   ++  M+ +GV  D FT+ FLLK C    W      +H  + K 
Sbjct: 83  TMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKY 142

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  + FV N+LI  +S CG                                 +L  AR 
Sbjct: 143 GFEVNSFVRNTLIYFHSNCG---------------------------------DLVIARS 169

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           +F ++PER  VSW+ +  GYA+ GE+ +A ++F+++P +++VSW+ M+ GY K+G+ME A
Sbjct: 170 IFYDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENA 229

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + LFD  P K +V W  +I+GY  +G  ++A  ++++M   G  PD+ T++S+L+ACA+ 
Sbjct: 230 RTLFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGECPDEVTMLSLLSACADL 289

Query: 325 GLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           G L +G K+H SI++  R   +  + NALVDMYAKCGS++ A+ VF  M +KD+ +WN++
Sbjct: 290 GDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSV 349

Query: 384 LYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           + GLA HG  E+++ LF+ M+  +   P++ TFVGV+ AC+HAG +++G +YF  M   Y
Sbjct: 350 IGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERY 409

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I P + H+GCM+DLLGR+G L EA  L+  M +EPNAIIW TLLGACR H  VEL    
Sbjct: 410 DIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLA 469

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            + L++L+  + G+Y +LSNI+A+ G+W+    VR  M     +K +G S +E D+
Sbjct: 470 NERLLKLRRDESGDYVLLSNIYASAGEWDGAEEVRKLMDDGGVRKEAGRSLIEADD 525


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/555 (37%), Positives = 316/555 (56%), Gaps = 47/555 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI VF  I +P+  ++N + R    +S    A ++++ M   G+  + FT+PFLLK+C  
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   Q IH  + K G+  D++V  SLI  Y++ G   +  A+K+F     RD+VS+ 
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNG--RLEDAQKVFDRSSHRDVVSYT 145

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----- 242
           ++I G    G +  A+++FDE+P +D VSWN ++ GYA+ G    A ELF+++       
Sbjct: 146 ALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKP 205

Query: 243 ---------------------RNIVSW-------------STMVWGYSKDGDMEMAKLLF 268
                                R + SW             + ++  YSK G++E A  L 
Sbjct: 206 DESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELL 265

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           + +  K ++ W  +I GY    + KEA  L+ +M  +G  P+D T++SIL ACA  G + 
Sbjct: 266 EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 329 LGMKVHASINK-YRFKCNTNVCN---ALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAM 383
           +G  +H  I+K  +    TN  +   +L+DMYAKCG +D A  V +     + L +WNAM
Sbjct: 326 IGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           ++G AMHG+   A  +FSRM+  G  PD  TFVG+L AC+H+G +D G   F SM +DY 
Sbjct: 386 IFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYN 445

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P++EHYGCMIDLLG SG  KEA  ++ +MP+EP+ +IW +LL AC+ H  +EL E   
Sbjct: 446 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFA 505

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR-LQMKKTRAQKPSGASSVEVDNEVHE 562
             LI+++  +PG+Y +LSNI+A  G WN+V  +R L   K   +K  G SS+E+D+ VHE
Sbjct: 506 KKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVVHE 565

Query: 563 FSVCDQLHPKSEQIY 577
           F + D+LHP++ +IY
Sbjct: 566 FIIGDKLHPQNREIY 580



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 196/448 (43%), Gaps = 49/448 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++  K K   + +Q+   ++KL    D Y+   LIS  A   ++  A KVF+     DV
Sbjct: 82  LKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDV 141

Query: 81  HLYNTLI-----RACVQN--------------SLNA------------QAFRVFLDMQEK 109
             Y  LI     R  +++              S NA            +A  +F +M + 
Sbjct: 142 VSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKT 201

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   ++ AC       L + +H+ I   G+  ++ + N+LID YSKCG   V 
Sbjct: 202 NVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG--EVE 259

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A +L   +  +D++SWN++I G        EA  LF EM       + V+  +IL   A
Sbjct: 260 TACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 319

Query: 226 KAGEMNLAFELFEKIPHR-------NIVSWST-MVWGYSKDGDMEMAKLLFDRMP-AKTL 276
             G +++   +   I  +       N  S  T ++  Y+K GD++ A  + D     ++L
Sbjct: 320 HLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSL 379

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
             W  +I G+A  G A  A  ++ +M + G++PDD T + +L+AC+ SG+L LG  +  S
Sbjct: 380 STWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRS 439

Query: 337 INK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
           + + Y           ++D+    G    A  + N M  + D V W ++L    +HG  E
Sbjct: 440 MRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 499

Query: 395 KALGLFSRM-KDEGFGPDKYTFVGVLCA 421
                  ++ K E   P  Y  +  + A
Sbjct: 500 LGESFAKKLIKIEPENPGSYVLLSNIYA 527



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 16/245 (6%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF  + + + + WN M  G A+      AL L+  M   G  P+ +TF  +L +
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C  +    +G Q  +      G    +  +  +I +  ++GRL++A + V       + +
Sbjct: 85  CAKSKTFKEG-QQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQK-VFDRSSHRDVV 142

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
            +  L+        +E A+++ D    +   D  ++  + + +A TG++ K   +  +M 
Sbjct: 143 SYTALITGYASRGYIESAQKMFD---EIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS--EQIYQMINT--LGKDLKPVGHAAKLS 597
           KT   KP  ++   V       S C Q        Q++  IN    G +LK V     L 
Sbjct: 200 KTNV-KPDESTMATV------VSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLY 252

Query: 598 AEIGE 602
           ++ GE
Sbjct: 253 SKCGE 257


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/618 (33%), Positives = 338/618 (54%), Gaps = 44/618 (7%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIKVF 72
           +L+   L  L KCK+++Q KQ+ +Q++   L  D + + +LI+  A+   R +     + 
Sbjct: 4   QLINPFLSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNIL 63

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNGKNWF 131
            + ++P+   +N  IR  + +    +A  ++   +Q  G   DN+TYP L KAC   +  
Sbjct: 64  FNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLI 123

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
            +   I   +   G+  DIFV N++I     CG   +  A+K+F     RD+VSWNSMI 
Sbjct: 124 RMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCG--DLDGARKMFDKSCVRDLVSWNSMIN 181

Query: 192 GLVKGGELSEARRLFDEMP----ERDAVSW------------------------------ 217
           G V+ G   EA   + EM     + D V+                               
Sbjct: 182 GYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL 241

Query: 218 -----NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                N ++D Y K G +  A +LF+ + ++ +VSW+TMV GY++ G ++MA  LFD MP
Sbjct: 242 TVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMP 301

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            K +VPW  +I GY      KEA  L+++M+   + PD+ T++S L+AC++ G L +G+ 
Sbjct: 302 DKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIW 361

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  I K+    N  +  AL+DMYAKCG +  A+ VF  +  ++ ++W A++ GLA+HG 
Sbjct: 362 IHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGN 421

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
              A+  FS M D    PD+ TF+G+L AC H G +++G +YF  M   + + P+++HY 
Sbjct: 422 AHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYS 481

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+DLLGR+G L+EA  L++SMP+E +A++WG L  ACR H  V + E     L+++   
Sbjct: 482 CMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPH 541

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           D G Y +L+N++     W +    R  M++   +K  G SS+EV+  V+EF V D+ HP+
Sbjct: 542 DSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVNGIVYEFIVRDKSHPQ 601

Query: 573 SEQIYQMINTLGKDLKPV 590
           SEQIY+ +  L + L+ V
Sbjct: 602 SEQIYECLIQLTRQLELV 619


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 335/570 (58%), Gaps = 13/570 (2%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ--MGLAIKVFNDIQDPDVHLYN 84
           C ++++TKQ  A +++  L  +P  + KLIS LAL     +  A K+F  +Q+PD  + N
Sbjct: 21  CTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICN 80

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           T+IR   ++    +A  ++  M E+GV  DN+TYPF+L AC       L +  H  + K 
Sbjct: 81  TMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKN 140

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  D+FV N+LI  Y  CG  G   A  +F     RD+V+WN MI   +  G   +A  
Sbjct: 141 GFGSDLFVINALIQFYHNCGSFGC--ACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFD 198

Query: 205 LFDEMPE-----RDAVSWNTILDGYAKAGEMNLAFELF----EKIPHRNIVSWSTMVWGY 255
           L DEM +      D V+  +++   A+ G +     L     E     N+   + ++  Y
Sbjct: 199 LLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMY 258

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K  D+E A+ +F+R+  K ++ WT ++SG A+ G  +EA  L+ +M+   ++ D+ TL+
Sbjct: 259 CKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLV 318

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
            +L+ACA++G L  G  +H  I+K+   C+  +  ALVDMYAKCGS+D A+ VF  M  +
Sbjct: 319 GVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR 378

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           ++ +WNA++ GLAMHG GE A+ LF +M+ +   PD  TF+ +LCAC+HAG +D+G+  F
Sbjct: 379 NVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMF 438

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            +M+  + I P++EHYGC++DLL R+ ++ +AL  +++MP++ N+++W TLLGACR    
Sbjct: 439 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGH 498

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            +LAE++   +I L+    G Y MLSN++A    W+    +R QMK    +K  G S +E
Sbjct: 499 FDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIE 558

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
           ++  +H+F   D+ H ++EQIY MI  + +
Sbjct: 559 LNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 588


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/634 (34%), Positives = 348/634 (54%), Gaps = 53/634 (8%)

Query: 2   SAPIRAPTWFSKRRLLEEK-LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           S+P   P      +L ++  ++ L  CK+++Q KQ+ +QI ++ L+ D     KL   +A
Sbjct: 127 SSPHLVPVLLRISKLTKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDTINKL---MA 183

Query: 61  LCRQMGL-----AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115
            C    L     A K+FN +QDP + +YN +++   +  +  +   +F  ++E G++ D 
Sbjct: 184 FCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAKRGILRKVLLLFQQLREDGLWPDG 243

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
           FTYPF+LKA          + +   I K G   D +V NSLID Y +  +  V  AKKLF
Sbjct: 244 FTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYE--LSNVENAKKLF 301

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-------PERDAVSW----------- 217
             M  RD VSWN MI+G V+     +A   F EM       P+   V             
Sbjct: 302 DEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKNL 361

Query: 218 ---------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
                                N +LD YAK G +N+A  +F+++  +N++ W++M+ GY 
Sbjct: 362 ELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYI 421

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             GD+  A+ LFD+ P + +V WT +I+GY +     +A  L+ +M+   +KPD  T+++
Sbjct: 422 NCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVT 481

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L  CA+ G L  G  +H  +++ R   +  V  AL++MY+KCG +D ++ +F  +  KD
Sbjct: 482 LLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKD 541

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
             SW +++ GLAM+G+  +AL LFS M+  G  PD  TF+GVL AC+H G +++G ++F 
Sbjct: 542 TASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFN 601

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII---WGTLLGACRKH 493
           SM++ + I P+VEHYGC+IDLLGR+G L EA  L+Q +P+E   I+   +G LL ACR H
Sbjct: 602 SMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYGALLSACRIH 661

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
           N V++ E +   L  ++  D   +T+L+NI+A+   W     VR +MK+   +K  G S 
Sbjct: 662 NNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSL 721

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           +EVD  VHEF V D  HP+  +I  M+N +   L
Sbjct: 722 IEVDGIVHEFLVGDPSHPEMMEICSMLNRVTGQL 755


>gi|226529055|ref|NP_001142025.1| uncharacterized protein LOC100274179 [Zea mays]
 gi|194706828|gb|ACF87498.1| unknown [Zea mays]
          Length = 570

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/559 (35%), Positives = 309/559 (55%), Gaps = 42/559 (7%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ I DPD  +YNT+ RA   +    +A R+   M  +GV  + FT PF++KAC     
Sbjct: 1   MFDGILDPDRVMYNTITRAYCNSDCPREALRLHRCMLRRGVLPNEFTLPFVVKACTRAQA 60

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           +     +H +  K G+ G +FV N+L+ SY+  G +G S  ++ F  M  R++VSWNSMI
Sbjct: 61  WDNALAVHGVALKLGFVGQVFVANALLHSYASAGSLGDS--RRFFDEMAGRNVVSWNSMI 118

Query: 191 AGLVKGGELSEARRLFDEMPER-------------------------------------- 212
            G  + G+  EA  LF EM  +                                      
Sbjct: 119 GGYAQAGDTREACALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSP 178

Query: 213 -DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
            D +    ++D Y+K G++ +A   FE +P +++VSW++M+   +K G ++ A+  FD M
Sbjct: 179 VDLILGGALVDMYSKCGDLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHM 238

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P +  V W  +IS Y ++G   EA  LY QM+  G  PD+ TL+ +L+AC   G L +G 
Sbjct: 239 PERNTVSWNTMISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGK 298

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
            VH  I       + ++ N+L+DMYAKCG +D A+ +F  M  +++VSWN ++ GLAMHG
Sbjct: 299 MVHLYIRDNIHNPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHG 358

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           +   A+  F  M      PD  TFV +L +C+H G ++ G  YF SM   Y +  +VEHY
Sbjct: 359 RALDAITFFRSMV-RNTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHY 417

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            CM+DLLGR G L++A+ L++ MP++P+ ++WG LLGACR H  V++ ++V+  L+ L+G
Sbjct: 418 ACMVDLLGRRGHLEKAVCLIKEMPMKPDVVVWGALLGACRIHGNVKIGKQVIKQLLELEG 477

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
              G + ++SN+   T  W  +  +R  MK+   +K  G SS+E++N +HEF V D  H 
Sbjct: 478 ISGGLFVLISNLLYETNQWEDMKRLRKLMKERGTRKDMGVSSIEINNSIHEFGVEDIRHE 537

Query: 572 KSEQIYQMINTLGKDLKPV 590
            S +IY +++ L   L  V
Sbjct: 538 SSSEIYAVVDQLSYHLISV 556



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 183/393 (46%), Gaps = 44/393 (11%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           +KL      ++A  L+ S A    +G + + F+++   +V  +N++I    Q     +A 
Sbjct: 72  LKLGFVGQVFVANALLHSYASAGSLGDSRRFFDEMAGRNVVSWNSMIGGYAQAGDTREAC 131

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
            +F +M+ +G   D FT   LL AC+ +      +++H L+   G   D+ +  +L+D Y
Sbjct: 132 ALFGEMRRQGFLGDEFTLASLLLACSQEGNLEFGRLVHCLMLVSGSPVDLILGGALVDMY 191

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
           SKCG   + +A++ F  M  + +VSW SM+    K G +  AR  FD MPER+ VSWNT+
Sbjct: 192 SKCG--DLCMARRCFEMMPIKSVVSWTSMLCAQTKHGSVDAARCWFDHMPERNTVSWNTM 249

Query: 221 LDGYAKAGEMNLAFELFEK---------------------------------------IP 241
           +  Y + G+ + A +L+++                                       I 
Sbjct: 250 ISCYVQRGQYHEALDLYKQMQSHGPAPDEATLVPVLSACGRIGDLTVGKMVHLYIRDNIH 309

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           + +I   ++++  Y+K G ++ A  LF  M  + +V W +II G A  G A +A   +  
Sbjct: 310 NPDISLINSLLDMYAKCGQVDTAIRLFREMCNRNVVSWNVIIGGLAMHGRALDAITFFRS 369

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCG 360
           M      PD  T +++L++C+  GLL  G     S+   Y  K        +VD+  + G
Sbjct: 370 MVR-NTSPDGITFVALLSSCSHGGLLETGQHYFESMRHVYNVKHEVEHYACMVDLLGRRG 428

Query: 361 SLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ 392
            L+ A+ +   M  K D+V W A+L    +HG 
Sbjct: 429 HLEKAVCLIKEMPMKPDVVVWGALLGACRIHGN 461


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/643 (34%), Positives = 347/643 (53%), Gaps = 63/643 (9%)

Query: 3   APIRAPTWFSKRRLLEEKLQNLH-----------KCKNLNQTKQLFAQIIKLDLQRDPYI 51
           +P+  P++F K         NL             CK+++Q KQ+ +QI ++ L+ D   
Sbjct: 72  SPVYIPSFFFKPPFSSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIGLEGDRDT 131

Query: 52  APKLISSLALCRQMGL-----AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
             KL   +A C    L     A K+FN +QDP + +YN +++   +  +  +   +F  +
Sbjct: 132 INKL---MAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLLFQQL 188

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           +E G++ D FTYPF+LKA          + +   I K G   D +V NSLID Y +  + 
Sbjct: 189 REDGLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYE--LS 246

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-------PERDAVSW-- 217
            V  AKKLF  M  RD VSWN MI+G V+     +A   F EM       P+   V    
Sbjct: 247 NVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEATVVSTL 306

Query: 218 ------------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
                                         N +LD YAK G +N+A  +F+++  +N++ 
Sbjct: 307 SACTALKNLELGDEIHNYVRKELGFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVIC 366

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W++M+ GY   GD+  A+ LFD+ P + +V WT +I+GY +     +A  L+ +M+   +
Sbjct: 367 WTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKI 426

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           KPD  T++++L  CA+ G L  G  +H  +++ R   +  V  AL++MY+KCG +D ++ 
Sbjct: 427 KPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLE 486

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           +F  +  KD  SW +++ GLAM+G+  +AL LFS M+  G  PD  TF+GVL AC+H G 
Sbjct: 487 IFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGL 546

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII---WG 484
           +++G ++F SM++ + I P+VEHYGC+IDLLGR+G L EA  L+Q +P+E   I+   +G
Sbjct: 547 VEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQEIPIENCEIVVPLYG 606

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL ACR HN V++ E +   L  ++  D   +T+L+NI+A+   W     VR +MK+  
Sbjct: 607 ALLSACRIHNNVDMGERLAKKLENIESCDSSIHTLLANIYASVDRWEDAKKVRRKMKELG 666

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
            +K  G S +EVD  VHEF V D  HP+  +I  M+N +   L
Sbjct: 667 VKKMPGCSLIEVDGIVHEFLVGDPSHPEMIEICSMLNRVTGQL 709


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/593 (36%), Positives = 329/593 (55%), Gaps = 52/593 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA---IKVFND--- 74
           +Q L  CK      ++ A+       ++  +  +++ + A  R+  LA     VF++   
Sbjct: 18  IQLLGTCKTSEDVSKIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARCVFHEYHV 77

Query: 75  -------IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
                  ++DP   L+N +I++        +A  +F  M + GV  D F+   +LKAC+ 
Sbjct: 78  SSXXSGNVEDP--FLWNAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKACSR 135

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             +       H  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+N
Sbjct: 136 LGFVKEGMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLG--FARQVFDRMSQRDSVSYN 193

Query: 188 SMIAGLVKGGELSEARRLFD----------------------------------EMPERD 213
           SMI G VK G +  AR LFD                                  EMPE+D
Sbjct: 194 SMIDGYVKCGLIESARELFDLMPSEKKNLISWNSMINGYAQRADGVDIASNLFDEMPEKD 253

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
            +SWN+++DGY K G +  A +LF+K+P R++V+W+TMV GY+K G +  AK LFD+MP 
Sbjct: 254 LISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQ 313

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMK 332
           + +V +  +++GY +     EA  +++ ME E+ L PD+ TL+ +L+A A+ G L   M 
Sbjct: 314 RDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMD 373

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H    + +F     +  AL+DMY+KCGS+  AM VF  +  K +  WNAM+ GLA+HG 
Sbjct: 374 MHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIHGL 433

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           GE A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M+R + I P+++HYG
Sbjct: 434 GESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQHYG 493

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+D+L RSGR++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI   G 
Sbjct: 494 CMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAGY 553

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +P +Y +LSN++A+ G W +V  VR  MK+ + QK  G S +E+D  VHEF V
Sbjct: 554 NPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWIELDGSVHEFFV 606


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 320/573 (55%), Gaps = 37/573 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +H    L Q  Q+ AQI   +L  +  +  +LISS    + +  A+ +F     P++ ++
Sbjct: 47  IHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVF 106

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N LIR   +NS    +   F+ M    +  D  T PF+LK+        L + +H  + K
Sbjct: 107 NALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMK 166

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D FV  SL+D Y K G +G  L                                 
Sbjct: 167 LGLEFDSFVRVSLVDMYVKIGELGFGL--------------------------------- 193

Query: 204 RLFDEMPERDAVS----WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
           +LFDE P+R+       WN +++G  K G+++ A  LFE +P RN  SW++++ G+ ++G
Sbjct: 194 QLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNG 253

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D++ A+ LF +MP K +V WT +I+G+++ G  ++A  ++ +M E G++P+D T++S L 
Sbjct: 254 DLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALL 313

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC + G L +G ++H  ++   F+ N  +  ALVDMYAKCG++ +A  VF     KDL++
Sbjct: 314 ACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLT 373

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W+ M++G A+HG  ++AL  F +MK  G  PD+  F+ +L AC+H+G +D+G+ +F SM 
Sbjct: 374 WSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMR 433

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DY I P ++HY  ++DLLGR+GRL EAL  +QSMP+ P+ +IWG L  ACR H  +E+A
Sbjct: 434 LDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMA 493

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E   + L++L+   PG+Y  LSN++AA G W  V  VR  MK    +K  G S +EV+ +
Sbjct: 494 ELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQ 553

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           VH F   D  H ++E+I   +  +    K  G+
Sbjct: 554 VHSFVAGDHAHVRAEEISLKLEEITASAKQEGY 586


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/558 (36%), Positives = 311/558 (55%), Gaps = 38/558 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +H  K + Q  Q+ AQII  +L     I  +LISS +L + +  ++ VFN  +  ++  +
Sbjct: 88  IHGSKTILQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTF 147

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N LIR    NS    A   F  M   G+  D  TYPF+LK+  G     L   IH +I +
Sbjct: 148 NALIRGLTTNSHFFNAIFHFRLMLRSGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILR 207

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           CG   D FV  SL+D Y                                 VK  +L  A 
Sbjct: 208 CGIELDSFVRVSLVDMY---------------------------------VKVEKLGSAF 234

Query: 204 RLFDEMPER-----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
           ++FDE PER      A+ WN ++ G  KAG M  A +LF+ +P +  VSWST++ G++K+
Sbjct: 235 KVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKN 294

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GDM+ A  LFD+MP K +V WT ++ G++  G +++A  ++ +M E G++P+  T++S L
Sbjct: 295 GDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSAL 354

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA+ G L  G+++H  I          +  ALVDMYAKCG++++A  VF    +K + 
Sbjct: 355 SACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIR 414

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +W  M++G A+HG  E+A+  F +M   G  PD+  F+ +L AC H+G +D G+ +F SM
Sbjct: 415 TWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSM 474

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             DY I P ++HY  ++D+LGRSG+LKEALR ++ MP+ P+ +IWG L  ACR H   ++
Sbjct: 475 RLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKM 534

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           A+  L+ L++L+ +  GNY  LSN +AA G W     VR+ M+     K SG S +EV+ 
Sbjct: 535 AKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEG 594

Query: 559 EVHEFSVCDQLHPKSEQI 576
           +VH F   D  H  S+ I
Sbjct: 595 QVHRFVSGDHDHKDSKAI 612


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 337/590 (57%), Gaps = 23/590 (3%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFND 74
           L   L +L KC  ++Q KQ+ AQ+++  L  DP+ A K+++  AL     L  A  VFN 
Sbjct: 40  LHPCLLSLEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQ 99

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC----NGKNW 130
           I +P     N++IR     +L  QA   +  M  +G+  D FT+P L K+C     GK  
Sbjct: 100 IPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCEGKQ- 158

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
                 +H    K G+  D ++ N+L++ YS CG + VS A+K+F  M  + +VSW +MI
Sbjct: 159 ------LHCHSTKLGFASDAYIQNTLMNMYSNCGCL-VS-ARKVFDKMVNKSVVSWATMI 210

Query: 191 AGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI- 245
               +     EA +LF  M     + + ++   +L   A++ ++  A ++ + I    I 
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIG 270

Query: 246 ---VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
              V  S ++  Y K G   +A+ LF++MP K L  W I+I+G+ E    +EA  L+++M
Sbjct: 271 FHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEM 330

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           + +G+K D  T+ S+L AC   G L LG  +H  I K + + +  +  ALVDMYAKCGS+
Sbjct: 331 QLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSI 390

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           ++AM VF  M +KD+++W A++ GLAM GQG KAL LF  M+     PD  TFVGVL AC
Sbjct: 391 ESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAAC 450

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +HAG +++G+ YF SM   YGI P +EHYGCM+D+LGR+GR+ EA  L+Q+MP+ P+  +
Sbjct: 451 SHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFV 510

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
              LL ACR H  + +AE     LI L   + G Y +LSNI+++  +W     +R  M +
Sbjct: 511 LVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVE 570

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
              +KP G S++EV   VHEF   D  HP+S +IY+ ++ + + LK  G+
Sbjct: 571 RNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGY 620


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/592 (35%), Positives = 331/592 (55%), Gaps = 52/592 (8%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV---------- 71
           Q L  CK  +   ++ A++I   + ++  +  +++ + A  R+  LA             
Sbjct: 1   QLLGSCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVY 60

Query: 72  ---FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
              + + +DP   L+N +I++    +   ++  +F  M E GV  D F+   +LKAC+  
Sbjct: 61  SLPYGETEDP--FLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRL 118

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
            +      IH  + K G + D+F+ N LI  Y KCG +G S  +++F  M +RD VS+NS
Sbjct: 119 GFVKAGMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYS--RQVFDRMPQRDSVSYNS 176

Query: 189 MIAGLVKGGELSEARRLFD----------------------------------EMPERDA 214
           MI G VK G +  AR LFD                                  EMPE+D 
Sbjct: 177 MIDGYVKCGLIESARELFDLMPKEMKNLISWNCLISGYAQTSDGVNIASKLFSEMPEKDL 236

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +SWN+++DGY K G +  A +LF+ +P R++++W+TM+ GY+K G +  AK LFD++P +
Sbjct: 237 ISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHR 296

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKV 333
            +V +  +++GY +     EA  L+ +ME E+ L PD+ TL+ +L+A A+ G L   M +
Sbjct: 297 DVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM 356

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  I K +F     +  AL+DMY+KCGS+ +AM VF G+  K++  WNA++ GLA+HG G
Sbjct: 357 HFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAIIGGLAIHGLG 416

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
             A  +  +++     PD  TF+GVL AC+H+G + +G+  F  M R + I P+++HYGC
Sbjct: 417 GPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 476

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D+L RSG ++ A  L++ MP+EPN +IW T L AC  H   E+ E V   LI   G +
Sbjct: 477 MVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQAGYN 536

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           P +Y +LSN++A+ G W  V  VR  MK+ + QK  G S +E+D  VHEF V
Sbjct: 537 PSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWIELDGRVHEFFV 588


>gi|297737154|emb|CBI26355.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 321/574 (55%), Gaps = 35/574 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQI-IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           L  +H CK L   K + A++ I+  +    ++  KL+   +       A KVF++I  P+
Sbjct: 6   LHIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPN 65

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            +L+ +LI   V+N    +AF +F+ M+ + +   NFT   +LKA      F   Q ++ 
Sbjct: 66  AYLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALARLTRFKGGQAVYG 125

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
                                              F  M E+DIVSWN MI+G      +
Sbjct: 126 FA---------------------------------FDEMCEKDIVSWNMMISGYGNNDRV 152

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
             AR+ FD MPER+ VSW +++ GY KAG+M  A  LF+ +P +++ SW+ MV GY   G
Sbjct: 153 DIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIG 212

Query: 260 D-MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           D    A+ LFD+MP K LV W+ +I GYA  G   +A  L+++ +E  +KPD+  ++ I+
Sbjct: 213 DYTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGII 272

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +AC++ G++     +  +        +  V  +L+DMYAKCGS++ A+ +F     KDL+
Sbjct: 273 SACSQLGIIDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLL 332

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            ++ M+  LA HG G  A+ LF +M+     PD  TF+GVL AC H G +D+G +YF  M
Sbjct: 333 CYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQM 392

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             ++GI P  +HY C++DLLGR G L+EA  L+++MP+ P++++WG LL ACR H  V+L
Sbjct: 393 TEEFGIQPSEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQL 452

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE     L +++  + GNY +LSNI+AA G W  VA VR ++++ R +K  G+S +E+ +
Sbjct: 453 AEVAAAELFKIEPDNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWIELSH 512

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            VHEF + D  H  S+ I  ++  L +D+K  G+
Sbjct: 513 VVHEFVMGDMSHTDSDSISLILYLLCEDMKLSGY 546


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/448 (42%), Positives = 279/448 (62%), Gaps = 2/448 (0%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DIF  N ++  Y       V  A+  F  M  +D  SWN+MI+G  + G + +AR LF  
Sbjct: 67  DIFSYNIMLACYLHNA--DVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLV 124

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MP R++VSWN ++ GY ++G+++LA +LFE  P R++V+W+ M+ G+ K G +E+A+  F
Sbjct: 125 MPVRNSVSWNAMISGYVESGDLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYF 184

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           + MP K LV W  +I+GY E   A+   +L+ +M E+G +P+  +L S+L  C+    L 
Sbjct: 185 EEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALK 244

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           LG +VH  I K     N     +L+ MY KCG L++A  +F  M +KD+V+WNAM+ G A
Sbjct: 245 LGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYA 304

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG GEKAL LF +M+DEG  PD  TFV VL AC HAGF+D G++YF SM RDYG+  + 
Sbjct: 305 QHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKP 364

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           +HY C++DLLGR G+L EA+ L++ MP +P++ I+GTLLGACR H  +ELAE     L+ 
Sbjct: 365 DHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLN 424

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L       Y  L+N++AA   W+ VA VR  MK  +  K  G S +EV + VHEF   D+
Sbjct: 425 LDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDR 484

Query: 569 LHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           +HP+   I++ +N L + ++  G+   L
Sbjct: 485 IHPELAFIHEKLNELERKMRLAGYVPDL 512



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 179/345 (51%), Gaps = 12/345 (3%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA-KAGEMNLAFELFEKI 240
           +++S N +I   ++ G+L+ A R+F+ M  +  V+WN++L GY+ + G++ +A +LF++I
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P  +I S++ M+  Y  + D+E A+L FD+MP K    W  +ISG+++ GM  +A  L+ 
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
            M       +  +  ++++   ESG L L  ++   +   R   +     A++  + K G
Sbjct: 124 VMPVR----NSVSWNAMISGYVESGDLDLAKQLF-EVAPVR---SVVAWTAMITGFMKFG 175

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            ++ A   F  M  K+LV+WNAM+ G   + Q E  L LF RM + GF P+  +   VL 
Sbjct: 176 KIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLL 235

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
            C++   +  G Q  + +     +   +     ++ +  + G L++A +L   MP + + 
Sbjct: 236 GCSNLSALKLGKQ-VHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKDV 293

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           + W  ++    +H A E A  + D + R +G  P   T ++ + A
Sbjct: 294 VTWNAMISGYAQHGAGEKALYLFDKM-RDEGMKPDWITFVAVLSA 337



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 10/216 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  KQLF    ++   R       +I+      ++ LA K F ++   ++  +N +I 
Sbjct: 145 DLDLAKQLF----EVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIA 200

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             ++N       ++F  M E G   +  +   +L  C+  +   L + +H LI K     
Sbjct: 201 GYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSW 260

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           +I    SL+  Y KCG   +  A KLF+ M ++D+V+WN+MI+G  + G   +A  LFD+
Sbjct: 261 NITAGTSLLSMYCKCG--DLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDK 318

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKI 240
           M +     D +++  +L     AG ++L  E F  +
Sbjct: 319 MRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSM 354


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 314/558 (56%), Gaps = 42/558 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGL-AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98
           ++  +L+ DP     LI S AL     L A  +F  I  P +  +N +IR    +    +
Sbjct: 1   MVNPNLRTDPSTIYNLIKSYALSPSTILKAHNLFQQIHRPTLPFWNIMIRGWSVSDQPNE 60

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           A R++  M  +G+  +N TY FL KAC           IHA + K G+   ++V N+LI+
Sbjct: 61  AIRMYNLMYRQGLLGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALIN 120

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL--------------------VKG-- 196
            Y  CG +G  LA+K+F  M ERD+VSWNS++ G                     VKG  
Sbjct: 121 MYGSCGHLG--LAQKVFDEMPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDA 178

Query: 197 -------------GELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK 239
                        GE   A  + D + E     D    NT++D Y + G ++LA  +F++
Sbjct: 179 VTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQ 238

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +  RN+VSW+ M+ GY K G++  A+ LFD M  + ++ WT +I+ Y++ G   EA RL+
Sbjct: 239 MQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLF 298

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M E+ +KPD+ T+ S+L+ACA +G L +G   H  I KY  K +  V NAL+DMY KC
Sbjct: 299 KEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKADIYVGNALIDMYCKC 358

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G ++ A+ VF  M KKD VSW +++ GLA++G  + AL  FSRM  E   P    FVG+L
Sbjct: 359 GVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGIL 418

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC HAG +DKG++YF SME+ YG+ P+++HYGC++DLL RSG L+ A   ++ MPV P+
Sbjct: 419 LACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPD 478

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
            +IW  LL A + H  + LAE     L+ L  S+ GNY + SN +A +  W     +R  
Sbjct: 479 VVIWRILLSASQVHGNIPLAEIATKKLLELDPSNSGNYVLSSNTYAGSNRWEDAVKMREL 538

Query: 540 MKKTRAQKPSGASSVEVD 557
           M+K+  QKPSG+S +E++
Sbjct: 539 MEKSNVQKPSGSSCIEME 556



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/398 (28%), Positives = 183/398 (45%), Gaps = 43/398 (10%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           + A+++KL  +   Y++  LI+    C  +GLA KVF+++ + D+  +N+L+    Q   
Sbjct: 99  IHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQCKR 158

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
             +   VF  M+  GV  D  T   ++ AC     + +   +   I +     D+++ N+
Sbjct: 159 FREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNT 218

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215
           LID Y + G+  V LA+ +F  M  R++VSWN+MI G  K G L  AR LFD M +RD +
Sbjct: 219 LIDMYGRRGL--VHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVI 276

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHR-------------------------------- 243
           SW  ++  Y++AG+   A  LF+++                                   
Sbjct: 277 SWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGSLDVGEAAHDYI 336

Query: 244 -------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
                  +I   + ++  Y K G +E A  +F  M  K  V WT IISG A  G A  A 
Sbjct: 337 QKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISGLAVNGFADSAL 396

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDM 355
             + +M    ++P  G  + IL ACA +GL+  G++   S+ K Y  K        +VD+
Sbjct: 397 DYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDL 456

Query: 356 YAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ 392
            ++ G+L  A      M    D+V W  +L    +HG 
Sbjct: 457 LSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGN 494


>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/615 (34%), Positives = 346/615 (56%), Gaps = 45/615 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           LH    +NQ KQ+ A II   L   P    +L+++      +  A +VF+ I  PD  ++
Sbjct: 9   LHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNA----SFIQYARQVFDQIPHPDQGVH 64

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            + I A  + SLN +A R F+ M +  V    FT P + K+C       + + +H+L+ +
Sbjct: 65  CSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVHSLVIR 124

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+   +F  N+LI+ Y+K   +G   A+ +F  +  +D +++N +I+   + GE+  AR
Sbjct: 125 YGFHSSVFCQNALINFYAKINDLGS--AELIFDGILVKDTIAYNCLISAYSRSGEVLAAR 182

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDG 259
            LFD+M +R  VSWN ++  YA+ G+ +  + +F+++       N ++ +T++   +K G
Sbjct: 183 ELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAKLG 242

Query: 260 DMEMA-----------------------------------KLLFDRMPAKTLVPWTIIIS 284
           D+EM                                    +L+FD M  + +V W+ +I+
Sbjct: 243 DLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAMIA 302

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GYA+ G + EA  L++ M+ A +KP+D TL+S+L+ACA+ G +  G ++ + +       
Sbjct: 303 GYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSACAQLGSVETGERIGSYVESRGLIS 362

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           N  V +AL+ MY+KCG++  A  +F+ + ++D V+WN+M+ GLA++G  E A+ L++RMK
Sbjct: 363 NVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTWNSMIMGLAINGFAEDAIALYNRMK 422

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
           +    P+  TFVG++ ACTHAG ++ G+++F SM  D+ I P +EH+ C++DL  RSGRL
Sbjct: 423 EIEVKPNNITFVGLMTACTHAGHVELGLEFFRSMRSDHNISPNIEHFACIVDLFCRSGRL 482

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
            +A   +  M VEPN +IWGTLL A R H  VELAE     L+ L+  + GNY +LSNI+
Sbjct: 483 IDAYEFICRMEVEPNVVIWGTLLSASRIHLNVELAELAGKKLLELEPDNSGNYVILSNIY 542

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584
           A+ G W +   VR  MK  R QK +  S VEV++ VH+F V D  HP+S+++Y  I+ L 
Sbjct: 543 ASAGRWQEALKVRKLMKDKRVQKAAAYSWVEVEDRVHKFLVGDTSHPRSDEVYSTIDGLA 602

Query: 585 KDLKPVGHAAKLSAE 599
                VG+      E
Sbjct: 603 LLSTWVGYELDFEIE 617


>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Vitis vinifera]
          Length = 464

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/494 (37%), Positives = 309/494 (62%), Gaps = 34/494 (6%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M +  V   +FT+  L+KAC+  +     + +H  I+K G+   +FV  +L+D Y     
Sbjct: 1   MVQAQVSPTSFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGN--- 57

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
                                          G++ EARR+FDEM ERD  +W T++  +A
Sbjct: 58  ------------------------------AGKIVEARRVFDEMSERDVFAWTTMISVHA 87

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           + G+M+ A +LF+++P RN  SW+ M+ GYS+  ++E A+LLF +MP + ++ WT +I+ 
Sbjct: 88  RTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTTMIAC 147

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y++    +EA  ++++M+  G+ PD+ T+ +I++ACA  G L LG ++H    +  F  +
Sbjct: 148 YSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLD 207

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             + +AL+DMYAKCGSLD ++ VF  + KK+L  WN+++ GLA+HG  E+AL +FSRM+ 
Sbjct: 208 VYIGSALIDMYAKCGSLDKSLVVFFKLRKKNLFCWNSIIEGLAVHGYAEEALAMFSRMQR 267

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
           E   P+  TF+ VL ACTHAG +++G + F SM RD+ I P++EHYGCM+DLLG++G L+
Sbjct: 268 EKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLE 327

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           +AL LV+SM +EPN++IWG LLG C+ H  +++A+  ++    L+ ++ G YT+L N++A
Sbjct: 328 DALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNESKVLEPNNSGYYTLLVNMYA 387

Query: 526 ATGDWNKVANVRLQMKKTRAQKPS-GASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584
               W++VAN+R  MK+   +K S G+S +E+D ++H+F+  D+ H  S++IY ++  L 
Sbjct: 388 EVNRWSEVANIRATMKELGVEKTSPGSSWIEMDRKIHQFAASDKSHLASDEIYTLLVELD 447

Query: 585 KDLKPVGHAAKLSA 598
             LK  G+  +L +
Sbjct: 448 GQLKLSGYVPELGS 461



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 142/329 (43%), Gaps = 54/329 (16%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +  +++  +QLF ++      R+      +I   +  R +  A  +F+ + + D+  + T
Sbjct: 88  RTGDMSSARQLFDEMPV----RNTASWNAMIDGYSRLRNVESAELLFSQMPNRDIISWTT 143

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN    +A  VF +MQ  G+  D  T   ++ AC       L + IH    + G
Sbjct: 144 MIACYSQNKQFREALAVFNEMQTNGIDPDEVTMATIISACAHLGALDLGKEIHLYAMEMG 203

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D+++ ++LID Y+KCG +  SL   +F  + ++++  WNS+I GL   G   EA  +
Sbjct: 204 FDLDVYIGSALIDMYAKCGSLDKSLV--VFFKLRKKNLFCWNSIIEGLAVHGYAEEALAM 261

Query: 206 FDEMPER----DAVSWNTILDGYAKAG----------EMNLAFELFEKIPHR-------- 243
           F  M       + V++ ++L     AG           M+  F +  +I H         
Sbjct: 262 FSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFSIPPEIEHYGCMVDLLG 321

Query: 244 -------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-----W 279
                              N V W  ++ G     ++++A++  +   +K L P     +
Sbjct: 322 KAGLLEDALELVRSMRMEPNSVIWGALLGGCKLHRNLKIAQVAVNE--SKVLEPNNSGYY 379

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           T++++ YAE     E A +   M+E G++
Sbjct: 380 TLLVNMYAEVNRWSEVANIRATMKELGVE 408


>gi|356513796|ref|XP_003525595.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 595

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/578 (38%), Positives = 333/578 (57%), Gaps = 9/578 (1%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL-ALCRQMGLAIKVFNDIQDPDVHL 82
           L   KNL++  Q+ +Q+I   L + P  A   I  L +       A  +F+ +  PD   
Sbjct: 14  LESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPRATFLFDHLHHPDAFH 73

Query: 83  YNTLIRACVQNSLNAQAFRVFL-DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            NT+IRA  +      A R +   M  + V  +++T+P L+K C     F      HA I
Sbjct: 74  CNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARI 133

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D+F  NSLI  YS  G +G   A+ +F      D+VS+NSMI G VK GE+  
Sbjct: 134 VKFGFGSDLFARNSLIRMYSVFGRIGN--ARMVFDESCWLDLVSYNSMIDGYVKNGEIGA 191

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           AR++F+EMP+RD +SWN ++ GY   G+++ A ELFE IP R+ VSW+ M+ G ++ G++
Sbjct: 192 ARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNV 251

Query: 262 EMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEA-GLKPDDGTLISIL 318
            +A   FDRMPA  + +V W  +++ +A      E   L+ +M E     P++ TL+S+L
Sbjct: 252 SLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVL 311

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA  G L +GM VH+ I     K +  +   L+ MYAKCG++D A  VF+ M  + +V
Sbjct: 312 TACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVV 371

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWN+M+ G  +HG G+KAL LF  M+  G  P+  TF+ VL ACTHAG + +G  YF  M
Sbjct: 372 SWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLM 431

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           +R Y I P+VEHYGCM+DLL R+G ++ +  L++ +PV+  + IWG LL  C  H   EL
Sbjct: 432 QRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSEL 491

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E V    I L+  D G Y +LSN++AA G W+ V +VRL +K+   QK + +S V +++
Sbjct: 492 GEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLED 551

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLK-PVGHAAK 595
              ++ V +    + + +Y M++ LG  +K  VGH+ K
Sbjct: 552 FESKY-VKNNSGYRKKIMYSMLSELGTQMKLSVGHSIK 588


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 328/597 (54%), Gaps = 52/597 (8%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV----- 71
           +   +  L  CK  +   Q+  ++IK  + ++  +  +++ + A  R+  LA        
Sbjct: 12  ISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFH 71

Query: 72  --------FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
                   F +++DP   L+N +I++        QA  +   M E GV  D F+   +LK
Sbjct: 72  EYHVCSFSFGEVEDP--FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLK 129

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC+   +      IH  + K G + D+F+ N LI  Y KCG +G  L++++F  M +RD 
Sbjct: 130 ACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG--LSRQMFDRMPKRDS 187

Query: 184 VSWNSMIAGLVKGGELSEARRLFD----------------------------------EM 209
           VS+NSMI G VK G +  AR LFD                                  +M
Sbjct: 188 VSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM 247

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           PE+D +SWN+++DGY K G +  A  LF+ +P R++V+W+TM+ GY+K G +  AK LFD
Sbjct: 248 PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFD 307

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLG 328
           +MP + +V +  +++GY +     EA  ++  ME E+ L PDD TL+ +L A A+ G L 
Sbjct: 308 QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLS 367

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
             + +H  I + +F     +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA
Sbjct: 368 KAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLA 427

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG GE A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P++
Sbjct: 428 IHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRL 487

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           +HYGCM+D+L RSG ++ A  L++ MPVEPN +IW T L AC  H   E  E V   LI 
Sbjct: 488 QHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLIL 547

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
             G +P +Y +LSN++A+ G W  V  VR  MK+ + +K  G S +E+D  VHEF V
Sbjct: 548 QAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 604


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 321/584 (54%), Gaps = 72/584 (12%)

Query: 28  KNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI--QDPDVHL 82
           +N N   + +Q+ AQIIK +         ++    A       A ++F  +  Q P+  +
Sbjct: 36  RNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFECVEKQKPETFV 95

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N+ ++A  +      A  +F  +++  V  D FT   +L+AC         +++H ++ 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+  ++++ N ++  Y+ CG                                 E+ EA
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCG---------------------------------EMGEA 182

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R LF++MP+RD V+WN ++    K G+   A++LF ++P RN+ SW++M+ G        
Sbjct: 183 RLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAG-------- 234

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
                                  Y + G AKEA  L+ +MEEAG+K ++ T++++LAACA
Sbjct: 235 -----------------------YVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 271

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           + G L LGM++H   N++ FK N  + N L+DMY KCG L+ A  VF  M ++ +VSW+A
Sbjct: 272 DLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSA 331

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ GLAMHG+ E+AL LFS M   G  P+  TF+G+L AC+H G I +G ++F SM RDY
Sbjct: 332 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 391

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI+PQ+EHYGCM+DLL R+G L EA   + +MP++PN ++WG LLGACR H  VE+AEE 
Sbjct: 392 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEA 451

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           +  L+ L   + G Y +LSNI+A  G W   A VR  MK  + +K  G SS+ VD  VHE
Sbjct: 452 IKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 511

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA---EIGEG 603
           F   ++ HP +EQI+Q    L ++++  G+    S    +I EG
Sbjct: 512 FVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEG 555



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 23/312 (7%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  + + + LF ++     QRD      +I+ L        A  +F+ + + +V  + ++
Sbjct: 176 CGEMGEARLLFEKMP----QRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSM 231

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   VQ     +A  +F  M+E GV  +  T   +L AC       L   IH    + G+
Sbjct: 232 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF 291

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             ++ + N+LID Y KCG   +  A K+F  M ER +VSW++MI GL   G   EA RLF
Sbjct: 292 KRNVRISNTLIDMYVKCGC--LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349

Query: 207 DEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSK 257
            +M     E + V++  +L   +  G ++     F  +         I  +  MV   S+
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409

Query: 258 DGDMEMAKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            G +  A      MP K   V W  ++     +    MA+EA +   +++      +DG 
Sbjct: 410 AGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPL----NDGY 465

Query: 314 LISILAACAESG 325
            + +    AE+G
Sbjct: 466 YVVLSNIYAEAG 477


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/631 (34%), Positives = 353/631 (55%), Gaps = 58/631 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L  C  + +  Q+ +Q IK  L  +     K+I      ++ G    A KVF++I  P V
Sbjct: 42  LETCNTMYEINQIHSQTIKTGLSSNHLFLTKVII-FCCTKESGDVYYARKVFDEIPQPSV 100

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL--VQMIH 138
            ++NT+I+   + + +     ++  M    +  D FT+PFLLK            V + H
Sbjct: 101 FIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNH 160

Query: 139 ALIYKCGYF-GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAGLVKG 196
           A+I+  G+   ++FV    I  +S CG+  V+ A+K+F  MG+  ++V+WN +++G  + 
Sbjct: 161 AVIH--GFLDSNLFVQKGFIHLFSLCGL--VNYARKIF-DMGDGWEVVTWNVVLSGYNRF 215

Query: 197 GELSEARRLFDEMPER-DAVSWNTI----------------------------------- 220
               E++RLF EM ++ + VS N++                                   
Sbjct: 216 KRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNL 275

Query: 221 ------LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
                 +D +A  GEM+ A  +F+++  R+++SW+++V G++    +++A+  FD+MP +
Sbjct: 276 ILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPER 335

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
             V WT +I GY      KE   L+  M+ + +KPD+ T++SIL ACA  G L LG    
Sbjct: 336 DYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAK 395

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
             I+K + K +T + NAL+DMY KCG+++ A  +FN M KKD  +W AM+ GLA +G GE
Sbjct: 396 TYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGE 455

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +AL +FS M +    PD+ T++GV+CACTH G + KG  +F +M   +GI P + HYGCM
Sbjct: 456 EALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCM 515

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +DLLGR+G LKEAL ++ +MPV+PN+I+WG+LLGACR H  V+LAE   + ++ L+  + 
Sbjct: 516 VDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENG 575

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
             Y +L NI+AA   W  + NVR  M +   +K  G S +E++  V+EF   D+ HP+S+
Sbjct: 576 AVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSK 635

Query: 575 QIYQMINTLGKDLKPVGHAAKLSA---EIGE 602
           +IY  +  + +DL   G++   S    ++GE
Sbjct: 636 EIYAKLENMKQDLSNAGYSPDTSEVFLDVGE 666


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 328/597 (54%), Gaps = 52/597 (8%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV----- 71
           +   +  L  CK  +   Q+  ++IK  + ++  +  +++ + A  R+  LA        
Sbjct: 5   ISSTIHVLGSCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFH 64

Query: 72  --------FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
                   F +++DP   L+N +I++        QA  +   M E GV  D F+   +LK
Sbjct: 65  EYHVCSFSFGEVEDP--FLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLK 122

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC+   +      IH  + K G + D+F+ N LI  Y KCG +G  L++++F  M +RD 
Sbjct: 123 ACSRLGFVKGGMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG--LSRQMFDRMPKRDS 180

Query: 184 VSWNSMIAGLVKGGELSEARRLFD----------------------------------EM 209
           VS+NSMI G VK G +  AR LFD                                  +M
Sbjct: 181 VSYNSMIDGYVKCGLIVSARELFDLMPMEMKNLISWNSMISGYAQTSDGVDIASKLFADM 240

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           PE+D +SWN+++DGY K G +  A  LF+ +P R++V+W+TM+ GY+K G +  AK LFD
Sbjct: 241 PEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKTLFD 300

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLG 328
           +MP + +V +  +++GY +     EA  ++  ME E+ L PDD TL+ +L A A+ G L 
Sbjct: 301 QMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLS 360

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
             + +H  I + +F     +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA
Sbjct: 361 KAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLA 420

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG GE A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P++
Sbjct: 421 IHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRL 480

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           +HYGCM+D+L RSG ++ A  L++ MPVEPN +IW T L AC  H   E  E V   LI 
Sbjct: 481 QHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELVAKHLIL 540

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
             G +P +Y +LSN++A+ G W  V  VR  MK+ + +K  G S +E+D  VHEF V
Sbjct: 541 QAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 519

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/509 (37%), Positives = 306/509 (60%), Gaps = 34/509 (6%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
           I+  L+   A       A ++F  I  PD  +YN +IR   Q+    +A  ++ +M    
Sbjct: 44  ISTSLVGPTATPTVTNYAHQLFAQIPQPDTFMYNVMIRGSSQSPNPLRAISLYTEMHRHF 103

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
           V  D++T+PF+LKAC    W +    +H ++ + G+  +  V N+L+  ++KCG      
Sbjct: 104 VKGDSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCG------ 157

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
                                      +L+ A  LFD+  + D V+W++++ GYA+ G++
Sbjct: 158 ---------------------------DLNVATSLFDDSCKGDVVAWSSLIAGYARRGDL 190

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
            +A +LF ++P R++VSW+ M+ GY K G+ME A++LFD  P K +V W  +I+GY   G
Sbjct: 191 KVARKLFNEMPERDLVSWNVMITGYVKQGEMESARMLFDEAPVKDVVSWNAMIAGYVVCG 250

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF-KCNTNVC 349
           ++K+A  L+++M  AG+ PD+ TL+S+L+ACA+ G L  G KVHA + +    K +T + 
Sbjct: 251 LSKQALELFNEMCRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLG 310

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           NAL+DMYAKCG++  ++ VF  +T KD++SWN+++ G+A+HG G+++L LF  M+     
Sbjct: 311 NALIDMYAKCGNIKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKIC 370

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P++ TFVGVL AC+HAG ID+G +YF  M  +Y I P + H GCM+D+LGR+G LKEA +
Sbjct: 371 PNEITFVGVLVACSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAK 430

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
            + SM +EPNAIIW TLL AC+ H  VELA+   + L  ++    G+Y ++SN++A+ G+
Sbjct: 431 FIDSMKIEPNAIIWRTLLAACKVHGDVELAKVANEKLFSMRKDHSGDYVLMSNLYASRGE 490

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           W+    VR  M  +   K  G+S VE  N
Sbjct: 491 WDGAEKVRKLMDDSGVTKIRGSSFVEACN 519



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 167/392 (42%), Gaps = 56/392 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +N    +   +++L    +  +   L+   A C  + +A  +F+D    DV  +++LI  
Sbjct: 124 VNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLFDDSCKGDVVAWSSLIAG 183

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             +      A ++F +M E+                                       D
Sbjct: 184 YARRGDLKVARKLFNEMPER---------------------------------------D 204

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +   N +I  Y K G   +  A+ LF     +D+VSWN+MIAG V  G   +A  LF+EM
Sbjct: 205 LVSWNVMITGYVKQG--EMESARMLFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEM 262

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-----YSKDGD 260
                  D V+  ++L   A  G++    ++  K+   ++   ST++       Y+K G+
Sbjct: 263 CRAGVFPDEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGN 322

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ +  +F  +  K ++ W  +I G A  G  KE+  L+  M+   + P++ T + +L A
Sbjct: 323 IKESLDVFWSITDKDVISWNSVIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVA 382

Query: 321 CAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLV 378
           C+ +G +  G K    + ++Y+ + N   C  +VDM  + G L  A    + M  + + +
Sbjct: 383 CSHAGEIDEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIEPNAI 442

Query: 379 SWNAMLYGLAMHGQGEKAL----GLFSRMKDE 406
            W  +L    +HG  E A      LFS  KD 
Sbjct: 443 IWRTLLAACKVHGDVELAKVANEKLFSMRKDH 474


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/611 (34%), Positives = 335/611 (54%), Gaps = 52/611 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-----QMGLAIKVFNDIQDP 78
           L  CK++   KQ+  QI++    +       L   +  C       +  A ++FN I  P
Sbjct: 39  LKNCKSMQHLKQIQTQILRTGFHQS---GDTLNKFMVCCTDPSIGNLHYAERIFNYIDIP 95

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            + +YN +I+A  +N    +A  +F  ++E+G+  DNFTYPF+ KA          + ++
Sbjct: 96  GLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVY 155

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             + K G   D +V NSL+D Y++ G   V   +++F  M +RD+VSWN +I+G VK   
Sbjct: 156 GFVVKSGLEFDTYVCNSLMDMYAEVG--RVQNLRQVFEEMPQRDVVSWNVLISGYVKCRR 213

Query: 199 LSEARRLFDEMPERDAVS---------------------------------------WNT 219
             +A  +F  M ++ ++                                         N 
Sbjct: 214 YEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIKIGNA 273

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++D Y K G +++A E+F  +P + ++ W++MV GY   G ++ A+ LF+R P + +V W
Sbjct: 274 LVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLW 333

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           T +I+GY +     +A  L+ +M+   + PD  TL+++L  CA+ G L  G  +H  I++
Sbjct: 334 TAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDE 393

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
            +   +  V  AL++MYAKCG ++ ++ +FNG+ +KD  SW +++ GLAM+G+  KAL L
Sbjct: 394 NKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALEL 453

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F+ M   G  PD  TF+GVL AC+H G +++G ++F SM   Y I P++EHYGC+IDLLG
Sbjct: 454 FAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLG 513

Query: 460 RSGRLKEALRLVQSMPVEPNAII---WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           R+G+L EA  L++  P   N +I   +G LL ACR H  VE+ E V   L+ ++  D   
Sbjct: 514 RAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLVGIESGDSSV 573

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           +T+L+NI+A+   W  V  VR +MK    +K  G SSVEV+  VHEF V D  HP+  +I
Sbjct: 574 HTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGDASHPEMREI 633

Query: 577 YQMINTLGKDL 587
           Y M++++ K L
Sbjct: 634 YSMLDSIAKPL 644


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 321/584 (54%), Gaps = 72/584 (12%)

Query: 28  KNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI--QDPDVHL 82
           +N N   + +Q+ AQIIK +         ++    A       A ++F  +  Q P+  +
Sbjct: 36  RNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFV 95

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N+ ++A  +      A  +F  +++  V  D FT   +L+AC         +++H ++ 
Sbjct: 96  WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 155

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+  ++++ N ++  Y+ CG                                 E+ EA
Sbjct: 156 KVGFRSNLYLQNMIVHLYASCG---------------------------------EMGEA 182

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R LF++MP+RD V+WN ++    K G+   A++LF ++P RN+ SW++M+ G        
Sbjct: 183 RLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAG-------- 234

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
                                  Y + G AKEA  L+ +MEEAG+K ++ T++++LAACA
Sbjct: 235 -----------------------YVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 271

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           + G L LGM++H   N++ FK N  + N L+DMY KCG L+ A  VF  M ++ +VSW+A
Sbjct: 272 DLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSA 331

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ GLAMHG+ E+AL LFS M   G  P+  TF+G+L AC+H G I +G ++F SM RDY
Sbjct: 332 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 391

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI+PQ+EHYGCM+DLL R+G L EA   + +MP++PN ++WG LLGACR H  VE+AEE 
Sbjct: 392 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEA 451

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           +  L+ L   + G Y +LSNI+A  G W   A VR  MK  + +K  G SS+ VD  VHE
Sbjct: 452 IKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 511

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA---EIGEG 603
           F   ++ HP +EQI+Q    L ++++  G+    S    +I EG
Sbjct: 512 FVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEG 555



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 23/312 (7%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  + + + LF ++     QRD      +I+ L        A  +F+ + + +V  + ++
Sbjct: 176 CGEMGEARLLFEKMP----QRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSM 231

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   VQ     +A  +F  M+E GV  +  T   +L AC       L   IH    + G+
Sbjct: 232 IAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGF 291

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             ++ + N+LID Y KCG   +  A K+F  M ER +VSW++MI GL   G   EA RLF
Sbjct: 292 KRNVRISNTLIDMYVKCGC--LEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349

Query: 207 DEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSK 257
            +M     E + V++  +L   +  G ++     F  +         I  +  MV   S+
Sbjct: 350 SDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSR 409

Query: 258 DGDMEMAKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            G +  A      MP K   V W  ++     +    MA+EA +   +++      +DG 
Sbjct: 410 AGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPL----NDGY 465

Query: 314 LISILAACAESG 325
            + +    AE+G
Sbjct: 466 YVVLSNIYAEAG 477


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/570 (35%), Positives = 317/570 (55%), Gaps = 41/570 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +I   L+ DP +A KL+ + +   +  +A  +F+   + +V  +N +IR+ V N+L  +A
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
             +F  M       D++T+P +LKAC+G +   +   +H  I K G   ++F+ N+L+  
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAM 181

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           Y KCG                                  L EAR++ D+MP RD VSWN+
Sbjct: 182 YGKCGC---------------------------------LREARKVLDQMPYRDVVSWNS 208

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNI-------VSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           ++ GYA++G+ + A E+ +++   N+        S S +V  Y+   +++    +F+RM 
Sbjct: 209 MVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC-YTSLENVQYIHNMFERMT 267

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            K L+ W ++I+ Y    M  EA  L+ QMEE G+KPD  T+ S+L AC +   L LG +
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRR 327

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  I K   + N  + NAL+DMYAKCG L+ A  VF+ M  +D+VSW +M+      GQ
Sbjct: 328 LHKYIEKGNLQPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           G  A+ LF++M D G  PD   FV VL AC+H G +D+G  YF  M   YGI+P++EH+ 
Sbjct: 388 GYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA 447

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+DL GR+G ++EA   ++ MP+EPN  +WG LL ACR H+ +++     D L +L   
Sbjct: 448 CMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPK 507

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
             G Y +LSNI+A  G W  V NVR  MKK   +K  G S+VE++ +VH F   DQ HP+
Sbjct: 508 QSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQ 567

Query: 573 SEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           ++ IY  ++ L   +K +G+  +  + + +
Sbjct: 568 AKNIYGELDVLVGKMKELGYIPQTESALHD 597


>gi|115441803|ref|NP_001045181.1| Os01g0914600 [Oryza sativa Japonica Group]
 gi|20804987|dbj|BAB92663.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534712|dbj|BAF07095.1| Os01g0914600 [Oryza sativa Japonica Group]
          Length = 589

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/496 (40%), Positives = 299/496 (60%), Gaps = 5/496 (1%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NTL+R     S   ++   F  M+   V  D +T+P +LKAC       +  ++H    
Sbjct: 85  WNTLVRLHAAASPR-RSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAV 143

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G   D+F  N+LI  Y  C +      +K+F   G RD+VSWNSM+AG V  GE+  A
Sbjct: 144 RTGLDADLFTRNALISFY--CRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYVGCGEVDLA 200

Query: 203 RRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           + LFDEM +RDA SW T++DGY + AG ++ A ELF+++P R++V W++M+ GY++ G M
Sbjct: 201 QDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRM 260

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A++LF+ MP + ++ W+I+I GY   G   EA   + +M   G+KPD    +  +AAC
Sbjct: 261 DEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAAC 320

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A+ G L  G  +H+ + K +   +  V  AL+DMY KCG LD A  +F  M KK +V+WN
Sbjct: 321 AQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWN 380

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+ GL  HG G  A+ LF++M+ E    D  + + VL +CTHAG + +G+  FY ME+D
Sbjct: 381 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKD 440

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P+VEHYG +IDLLGR+GR+ +A   +++MP+EP   +WG+LL +CR H  VELAE 
Sbjct: 441 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 500

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
            ++ L  L   D G Y +LSNI+A  G W+ V  +R  M     +K  G S +EVD ++H
Sbjct: 501 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIH 560

Query: 562 EFSVCDQLHPKSEQIY 577
           EF      HP  E+IY
Sbjct: 561 EFVNGGSSHPHKEEIY 576



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 50/327 (15%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +++ ++LF Q+      RD      +I   A   +M  A  +F ++ + +V  ++ +I  
Sbjct: 229 VDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDG 284

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+     +A   F  M   G+  D       + AC         + +H+ + K     D
Sbjct: 285 YVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFD 344

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +LID Y KCG   + LAK +F SM ++ +V+WN MI GL   G   +A +LF++M
Sbjct: 345 VVVQTALIDMYVKCG--RLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 402

Query: 210 P----------------------------------ERD------AVSWNTILDGYAKAGE 229
                                              E+D         +  ++D   +AG 
Sbjct: 403 ETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 462

Query: 230 MNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVPWTIIISG 285
           ++ A    E +P       W +++        +E+A+L  +R+    A     + ++ + 
Sbjct: 463 VDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNI 522

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA++GM  +  R+   M   G+K + G
Sbjct: 523 YADEGMWDDVFRIRKLMSAEGMKKNIG 549


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 340/591 (57%), Gaps = 18/591 (3%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           R+ L +K  +L  +C ++ Q KQ+ AQ++   + +        +  +A  +    A   F
Sbjct: 28  RQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHK----PNSFLYKIADLKDFAYASVFF 83

Query: 73  NDIQDPDVHLYNTLIRACVQN-SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           ++I DP  + +N +IR      + ++ A   +  M+  G+  +N TYPFL  AC+     
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAV 143

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
              +M H  + + G   D  V +SLI  Y++CG +G   A+K+F  + ++D+VSWNSMI+
Sbjct: 144 ENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGD--ARKVFDEISQKDLVSWNSMIS 201

Query: 192 GLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR---- 243
           G  K     EA  LF EM E     + +S  ++L    + G++ L   + E +       
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           N    S ++  Y K GD+  A+ +FD M  K  V W  +I+GYA+ GM++EA +L+  M 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
            +   PD  TLI IL+ACA  G L LG +V    ++  F+ +  V  ALVDMYAKCGSLD
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKYTFVGVLCA 421
           NA  VF GM KK+ VSWNAM+  LA HGQ ++AL LF  M +EG    P+  TFVGVL A
Sbjct: 382 NAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSA 441

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C HAG +D+G + F+ M   +G++P++EHY CM+DL  R+G L+EA   V +MP +P+ +
Sbjct: 442 CVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           I G LLGAC+K   ++++E V+  L+ L+ S+ GNY + S ++A    W+  A +R+ MK
Sbjct: 502 ILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMK 561

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +    K  G S +++++++HEF   D LH +  +I+Q+++ L  DL+  G+
Sbjct: 562 QKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGY 612


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/560 (36%), Positives = 313/560 (55%), Gaps = 41/560 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +I   L+ DP +A KL+ + +   +  +A  +F+   + +V  +N +IR+ V N+L  +A
Sbjct: 62  VINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEA 121

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
             +F  M       D++T+P +LKAC+G +   +   +H  I K G   ++F+ N+L+  
Sbjct: 122 LSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAM 181

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           Y KCG                                  L EAR++ D+MP RD VSWN+
Sbjct: 182 YGKCGC---------------------------------LREARKVLDQMPYRDVVSWNS 208

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNI-------VSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           ++ GYA++G+ + A E+ +++   N+        S S +V  Y+   +++    +F+RM 
Sbjct: 209 MVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVC-YTSLENVQYIHNMFERMT 267

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            K L+ W ++I+ Y    M  EA  L+ QMEE G+KPD  T+ S+L AC +   L LG +
Sbjct: 268 KKNLISWNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRR 327

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  I K   + N  + NAL+DMYAKCG L+ A  VF+ M  +D+VSW +M+      GQ
Sbjct: 328 LHKYIEKGNLRPNLLLENALLDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQ 387

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           G  A+ LF++M D G  PD   FV VL AC+H G +D+G  YF  M   YGI+P++EH+ 
Sbjct: 388 GYDAVALFAKMLDSGQNPDSIAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFA 447

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+DL GR+G ++EA   ++ MP+EPN  +WG LL ACR H+ +++     D L +L   
Sbjct: 448 CMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPK 507

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
             G Y +LSNI+A  G W  V NVR  MKK   +K  G S+VE++ +VH F   DQ HP+
Sbjct: 508 QSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQ 567

Query: 573 SEQIYQMINTLGKDLKPVGH 592
           ++ IY  ++ L   +K +G+
Sbjct: 568 AKNIYGELDVLVGKMKELGY 587


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/595 (36%), Positives = 328/595 (55%), Gaps = 48/595 (8%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA-------- 68
           +   +Q L  CK      ++   +IK  + ++  +  +++ + A  R+  LA        
Sbjct: 5   ISSTIQVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVFH 64

Query: 69  ---IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
              +  F+  +  D  L+N +I++        QA  +F  M E GV  D F+   +LKAC
Sbjct: 65  EYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKAC 124

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           +   +      IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS
Sbjct: 125 SRLGFVKGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLG--FARQMFDRMPQRDSVS 182

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKAGE-MNLAFELFEKIPH 242
           +NSMI G VK G +  AR LFD MP   ++ +SWN+++ GYA+  E +N+A +LF ++P 
Sbjct: 183 YNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFAEMPE 242

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           ++++SW++M+ GY K G +E AK LFD MP + +V    +I GYA+ G   +A  L+DQM
Sbjct: 243 KDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQAKTLFDQM 302

Query: 303 --------------------------------EEAGLKPDDGTLISILAACAESGLLGLG 330
                                           +E+ L PD+ TL+ IL+A A+ G L   
Sbjct: 303 PLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQLGRLSKA 362

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             +H  I + +F     +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+H
Sbjct: 363 TDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAVH 422

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G GE A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++H
Sbjct: 423 GLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQH 482

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+D+L RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI   
Sbjct: 483 YGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQA 542

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           G +P +Y +LSN++A+ G W  V  VR  MK+ + +K  G S +E+D  VHEF V
Sbjct: 543 GYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEFFV 597


>gi|218189594|gb|EEC72021.1| hypothetical protein OsI_04901 [Oryza sativa Indica Group]
          Length = 589

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/496 (40%), Positives = 299/496 (60%), Gaps = 5/496 (1%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NTL+R     S   ++   F  M+   V  D +T+P +LKAC       +  ++H    
Sbjct: 85  WNTLVRLHAAASPR-RSLLYFSRMRRVAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAV 143

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G   D+F  N+LI  Y  C +      +K+F   G RD+VSWNSM+AG V  GE+  A
Sbjct: 144 RTGLDADLFTRNALISFY--CRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYVGCGEVDLA 200

Query: 203 RRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           + LFDEM +RDA SW T++DGY + AG ++ A ELF+++P R++V W++M+ GY++ G M
Sbjct: 201 QDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRM 260

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A++LF+ MP + ++ W+I+I GY   G   EA   + +M   G+KPD    +  +AAC
Sbjct: 261 DEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAAC 320

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A+ G L  G  +H+ + K +   +  V  AL+DMY KCG LD A  +F  M KK +V+WN
Sbjct: 321 AQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWN 380

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+ GL  HG G  A+ LF++M+ E    D  + + VL +CTHAG + +G+  FY ME+D
Sbjct: 381 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKD 440

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P+VEHYG +IDLLGR+GR+ +A   +++MP+EP   +WG+LL +CR H  VELAE 
Sbjct: 441 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 500

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
            ++ L  L   D G Y +LSNI+A  G W+ V  +R  M     +K  G S +EVD ++H
Sbjct: 501 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIH 560

Query: 562 EFSVCDQLHPKSEQIY 577
           EF      HP  E+IY
Sbjct: 561 EFVNGGSSHPHKEEIY 576



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 50/327 (15%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +++ ++LF Q+      RD      +I   A   +M  A  +F ++ + +V  ++ +I  
Sbjct: 229 VDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDG 284

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+     +A   F  M   G+  D       + AC         + +H+ + K     D
Sbjct: 285 YVRFGEPNEALEFFQRMLSCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFD 344

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +LID Y KCG   + LAK +F SM ++ +V+WN MI GL   G   +A +LF++M
Sbjct: 345 VVVQTALIDMYVKCG--RLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 402

Query: 210 P----------------------------------ERD------AVSWNTILDGYAKAGE 229
                                              E+D         +  ++D   +AG 
Sbjct: 403 ETERAPMDDLSVLAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 462

Query: 230 MNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVPWTIIISG 285
           ++ A    E +P       W +++        +E+A+L  +R+    A     + ++ + 
Sbjct: 463 VDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNI 522

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA++GM  +  R+   M   G+K + G
Sbjct: 523 YADEGMWDDVFRIRKLMSAEGMKKNIG 549


>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 195/545 (35%), Positives = 337/545 (61%), Gaps = 25/545 (4%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF--LDMQEKGVF 112
           +I++L+   ++  A ++F+++++PDV  + T+I   ++  +  +A R+F  +D ++  V 
Sbjct: 73  MITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVT 132

Query: 113 TDNFTYPFLL--KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
                  ++   K  + +  F+ +   + + +           N++ID Y++ G +  ++
Sbjct: 133 WTAMVGGYIRSNKISDAEKLFNEMPNKNVVSW-----------NTMIDGYAQNGRIDSAM 181

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
              LF  M ER++VSWN++++ L + G + EARRLFD MPERD +SW  ++     AG +
Sbjct: 182 Y--LFEKMPERNVVSWNTVMSMLAQCGRIEEARRLFDRMPERDVISWTAMI-----AGLL 234

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + A +LFE++P R++ SW+TM+ G  ++GD+  A+ LF+ MP K ++ WT +I+G  ++G
Sbjct: 235 DEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQEG 294

Query: 291 MAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
            ++EA +++ +M    G KP+ GT +S+L AC+    LG G +VH  I+K  ++ +T V 
Sbjct: 295 ESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVV 354

Query: 350 NALVDMYAKCGSLDNAMSVF-NGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           +AL++MY+KCG L  A  +F +GMT ++DLVSWN ++   A HG G++A+  F  M+  G
Sbjct: 355 SALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRKSG 414

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
           F PD  T+VG+L AC+HAG +++G++YF  + +D  IL + +HY C++DL GR+GRLKEA
Sbjct: 415 FKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEA 474

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
              ++ +  +P+A +WG LL  C  H  V++ ++    L+ ++  + G Y +LSNI+A+T
Sbjct: 475 FGFIERLETKPSARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGTYLLLSNIYAST 534

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           G W + A VRL+MK    +K  G S +EV N VH F V D+ H +S+ IY ++  L   +
Sbjct: 535 GKWREAARVRLKMKDKGLKKQPGCSWIEVGNRVHVFVVGDKSHSQSKLIYSLLRDLHSKM 594

Query: 588 KPVGH 592
           K  G+
Sbjct: 595 KKAGY 599



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 173/354 (48%), Gaps = 38/354 (10%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           +S+ +K F   G  ++   N MI  L K G + EARRLFDEM E D ++W T++ GY K 
Sbjct: 54  ISIPRKDFTVDG--NVARCNWMITNLSKDGRIMEARRLFDEMREPDVITWTTVISGYIKC 111

Query: 228 GEMNLAFELFEKI-PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
           G +  A  LF+++   +N+V+W+ MV GY +   +  A+ LF+ MP K +V W  +I GY
Sbjct: 112 GMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSWNTMIDGY 171

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE----------------------- 323
           A+ G    A  L+++M E  +   + T++S+LA C                         
Sbjct: 172 AQNGRIDSAMYLFEKMPERNVVSWN-TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMI 230

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           +GLL   + +   + +        +   L+    + G L  A  +FN M KK+++SW  M
Sbjct: 231 AGLLDEALDLFERMPERDLPSWNTMITGLI----QNGDLRRARKLFNEMPKKNVISWTTM 286

Query: 384 LYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           + G    G+ E+AL +FSRM    G  P++ TFV VL AC++   + +G Q    + +  
Sbjct: 287 ITGCVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISK-- 344

Query: 443 GILPQVEHY--GCMIDLLGRSGRLKEALRLVQS-MPVEPNAIIWGTLLGACRKH 493
             + Q   +    +I++  + G L  A ++    M  + + + W  ++ A   H
Sbjct: 345 -TVYQDSTFVVSALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHH 397



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 144/334 (43%), Gaps = 61/334 (18%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++   LF ++ + DL     +   LI +  L R    A K+FN++   +V  + T+I  
Sbjct: 234 LDEALDLFERMPERDLPSWNTMITGLIQNGDLRR----ARKLFNEMPKKNVISWTTMITG 289

Query: 90  CVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           CVQ   + +A ++F  M    G   +  T+  +L AC+        Q +H +I K  Y  
Sbjct: 290 CVQEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQD 349

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMS--MGERDIVSWNSMIAGLVKGGELSEARRLF 206
             FV ++LI+ YSKCG +G   A+K+F      +RD+VSWN +IA     G   EA   F
Sbjct: 350 STFVVSALINMYSKCGELGT--ARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFF 407

Query: 207 DEMPER----DAVSWNTIL-----------------------------DGYA-------K 226
            EM +     D V++  +L                             D YA       +
Sbjct: 408 KEMRKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGR 467

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV--------P 278
           AG +  AF   E++  +     S  VWG    G    A +   +  AK L+         
Sbjct: 468 AGRLKEAFGFIERLETKP----SARVWGALLAGCNVHANVKIGKQAAKKLLEVEPENAGT 523

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           + ++ + YA  G  +EAAR+  +M++ GLK   G
Sbjct: 524 YLLLSNIYASTGKWREAARVRLKMKDKGLKKQPG 557


>gi|449432255|ref|XP_004133915.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
 gi|449480068|ref|XP_004155790.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Cucumis sativus]
          Length = 638

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/609 (34%), Positives = 332/609 (54%), Gaps = 50/609 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS---------LALCRQMGLAIKVFND 74
           L  C+  N   Q+ A+IIK    ++  +  K+I +         +   R +         
Sbjct: 21  LRHCETQNDVNQVHARIIKTGYLKNSSLTTKIILNSISSPHKPLVEFARYVFFTRYAVQR 80

Query: 75  IQ----DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           I+    D D  L+N +I++    +   +A  +F  M E G   D F++  +LKAC     
Sbjct: 81  IRRNHLDDDPFLWNAVIKSYSHGNEPVRALVLFCMMLENGFCVDKFSFSLILKACARVCL 140

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
               + IH L+ K     ++F+ N LI  Y +CG   +  A+++F  M  +D VS+NSMI
Sbjct: 141 VEEGKQIHGLLMKLEIGSNLFLLNCLIAMYLRCG--DIEFARQVFDRMPIQDSVSYNSMI 198

Query: 191 AGLVKGGELSEARRLFD----------------------------------EMPERDAVS 216
            G VK G +  AR LFD                                  +MPERD VS
Sbjct: 199 DGYVKSGTIDLARELFDSMPLEDKNLISWNSMLGGFAQTKDGIGLALELFEKMPERDLVS 258

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           WNTI+ G+AK G +  A  LF ++P R+++SWS M+ GY+K GD+++A+ LFD MP K +
Sbjct: 259 WNTIIGGFAKCGRIEFAHSLFNRMPKRDVISWSNMIDGYAKLGDIKVARTLFDEMPDKDV 318

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           V +  I++GYA+ G   EA  ++ +M+ ++ L PD+ TL+  L+A ++ G +     +H 
Sbjct: 319 VAFNTIMAGYAQNGYYTEALEIFHEMQRQSNLSPDETTLVVALSAISQLGHVEKAASMHN 378

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
              +        V  AL+DMY+KCGS++NA+ +F+G+ +K +  WNAM+ G+A +G G+ 
Sbjct: 379 YFLENGISVTGKVAVALIDMYSKCGSIENAILIFDGVDQKGIDHWNAMISGMARNGLGKL 438

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A G+   M      PD  TF+GVL AC HAG + +G+  F  M + + + P+++HYGCM+
Sbjct: 439 AFGMLLEMHRLSVKPDGITFIGVLNACAHAGLVKEGLICFELMRKVHKLEPKLQHYGCMV 498

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           D+LG++G ++ AL+ ++ MP+EPN IIW TLL AC+ H    + E +   L+ +   +  
Sbjct: 499 DILGKAGLVEGALKFIEEMPIEPNDIIWRTLLSACQNHENFTIGELIAKHLMTMDSCNSS 558

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
           +Y +LSNI+A  G W+  + VR+ MKK    K  G S +E++  VHEF V D+ HP   +
Sbjct: 559 SYVLLSNIYARLGLWSAASKVRMMMKKQNLTKVPGCSWIELEGVVHEFLVRDKSHPYVSE 618

Query: 576 IYQMINTLG 584
           IY +++  G
Sbjct: 619 IYSVLDGFG 627


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/583 (35%), Positives = 335/583 (57%), Gaps = 16/583 (2%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS-SLALCRQMGLAIKVFNDIQDPD 79
           LQNL   ++ NQ   + +  I   + RDP ++ KL+  SL+       +  +F  I  P+
Sbjct: 35  LQNLSHPRSFNQ---ILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPN 91

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V  +N + RA  ++S  A+   ++  M   G   DN+++PF+LKAC   +  H  + IH+
Sbjct: 92  VFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHS 151

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
              K G   D+FV N+LI ++S CG V  + A    +    RD+VSWNSMI+G ++    
Sbjct: 152 STLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRY 211

Query: 200 SEARRLFDEMPERDAVSWN--TILDGYAKAGEMNLAFELFEKIPHR--------NIVSWS 249
             A ++F E+    ++S +  T++   +  G + L  +L +KI           ++   S
Sbjct: 212 ELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGL-LDLGKKIHGLFTGSGFVLDVFVGS 270

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           +++  YSK G +E A+ +FDR+P +  V WT +I+GYA+  + KEA  L+ +M+  G   
Sbjct: 271 SLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAA 330

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  T+  +L+AC   G L  G  +H    +   + + N  NAL+ MY+KCG +  A+ +F
Sbjct: 331 DAATIACVLSACGHWGALAQGRWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIF 390

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCACTHAGFI 428
           +G+T+ D+ SW+A++ GLAM+G+ +KAL LFS+M+      P++ TF+GVLCAC H GF+
Sbjct: 391 HGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFV 450

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           DKG+ YF +M + Y + P +EHYGCM+DLLGR+  L EA + ++++P++P+ +IW +LL 
Sbjct: 451 DKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLF 510

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACR H  +ELAE     +  L+    G   +LSN++A+   W  V  VR  M   R +K 
Sbjct: 511 ACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQ 570

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            G S VE+D  VHE  V D+ HP+   IY+ + ++ K L+  G
Sbjct: 571 PGCSFVEIDGLVHELFVADRSHPEMGAIYETMISINKALQSKG 613


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 331/576 (57%), Gaps = 39/576 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS--SLALCRQMGLAIKVFNDIQDP 78
           L  L+ CK+L   KQ+ A ++KL L+ DP+IA KL+   +++L   +  A ++F    +P
Sbjct: 9   LSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNP 68

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT--DNFTYPFLLKACNGKNWFHLVQM 136
           DV ++NTLIR   ++     +   F++M+ +  F+  D+F++ F++KA        +   
Sbjct: 69  DVFMHNTLIRGLYESDRPQDSLLKFIEMR-RNSFSPPDSFSFAFIVKAAANLRSVRVGIQ 127

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H      G    +FV  +LI  Y +CG VG                             
Sbjct: 128 LHCQALVHGLDTHLFVGTTLISMYGECGFVGF---------------------------- 159

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
                AR++FDEMPE +A++WN ++    + G+M    ELF+ +P RN++SW+ M+ GY+
Sbjct: 160 -----ARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYT 214

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K G++E+A+ +F  MP K  V W+ +I G+A  G  +EA   + +++  G++P++ +L  
Sbjct: 215 KAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTG 274

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG-MTKK 375
           +L+ACA++G L  G  +H  I K       +V NAL+D Y+KCG++  A  VF   M ++
Sbjct: 275 VLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNER 334

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           ++VSW +M+  LAMHG GE+A+G+F +M++ G  PD+  F+ +L AC+HAG +++G +YF
Sbjct: 335 NIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYF 394

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M+  Y I P +EHYGCM+DL GR+G+L++A   V  MP+   AIIW TLLGAC  H  
Sbjct: 395 DKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGD 454

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           V+LAE+V + L  L  ++  ++ +LSN +A  G W   A+VR  M + R  K  G S +E
Sbjct: 455 VKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIE 514

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           VD  ++ F    + +  +E+ Y+ +  + + L+  G
Sbjct: 515 VDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEG 550


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/628 (33%), Positives = 333/628 (53%), Gaps = 65/628 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRD--------------PYIAPKLISSLALCRQMGLAI 69
           L  CK L   KQ+ AQI++  +                 P  +P           +  A+
Sbjct: 19  LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPS---------ALDYAL 69

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            +F+ I +P     N L+R   +         ++L ++  G   D F++P LLKA +  +
Sbjct: 70  SLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLS 129

Query: 130 WFHLVQMIHALIYKCGYF-GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
             +L   IH L  K G+F  D F+ ++LI  Y+ CG   +  A+ LF  M  RD+V+WN 
Sbjct: 130 ALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACG--RIMDARFLFDKMSHRDVVTWNI 187

Query: 189 MIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDG--------------------- 223
           MI G  +        +L++EM     E DA+   T+L                       
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNG 247

Query: 224 --------------YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
                         YA  G M+LA E+++++P +++V  + M+ GY+K G ++ A+ +FD
Sbjct: 248 FRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFD 307

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           RM  K LV W+ +ISGYAE     EA +L+++M+   + PD  T++S+++ACA  G L  
Sbjct: 308 RMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQ 367

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
              +H   +K  F     + NAL+DMYAKCG+L  A  VF  M +K+++SW++M+   AM
Sbjct: 368 AKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAM 427

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG  + A+ LF RMK++   P+  TF+GVL AC+HAG +++G ++F SM  ++ I PQ E
Sbjct: 428 HGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQRE 487

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HYGCM+DL  R+  L++A+ L+++MP  PN IIWG+L+ AC+ H  +EL E     L+ L
Sbjct: 488 HYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLEL 547

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +    G   +LSNI+A    W+ V  VR  MK     K    S +EV+NEVH F + D+ 
Sbjct: 548 EPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRY 607

Query: 570 HPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           H +S++IY+ ++ +   LK VG+    S
Sbjct: 608 HKQSDEIYKKLDAVVSQLKLVGYTPSTS 635


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 339/591 (57%), Gaps = 18/591 (3%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           R+ L +K  +L  +C ++ Q KQ+ AQ++   + +        +  +A  +    A   F
Sbjct: 28  RQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHK----PNSFLYKIADLKDFAYASVFF 83

Query: 73  NDIQDPDVHLYNTLIRACVQN-SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           ++I DP  + +N +IR      + ++ A   +  M+  G+  +N TYPFL  AC+     
Sbjct: 84  SNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAV 143

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
              +M H  + + G   D  V +SLI  Y++CG +G   A+K+F  + ++D+VSWNSMI+
Sbjct: 144 ENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGD--ARKVFDEISQKDLVSWNSMIS 201

Query: 192 GLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR---- 243
           G  K     EA  LF EM E     + +S  ++L    + G++ L   + E +       
Sbjct: 202 GYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTL 261

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           N    S ++  Y K GD+  A+ +FD M  K  V W  +I+GYA+ GM++EA +L+  M 
Sbjct: 262 NYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMR 321

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
            +   PD  TLI IL+ACA  G L LG +V    ++  F+ +  V  ALVDMYAKCGSLD
Sbjct: 322 MSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLD 381

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKYTFVGVLCA 421
           NA  VF GM  K+ VSWNAM+  LA HGQ ++AL LF  M +EG    P+  TFVGVL A
Sbjct: 382 NAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSA 441

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C HAG +D+G + F+ M   +G++P++EHY CM+DL  R+G L+EA   V +MP +P+ +
Sbjct: 442 CVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEV 501

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           I G LLGAC+K   ++++E V+  L+ L+ S+ GNY + S ++A    W+  A +R+ MK
Sbjct: 502 ILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMK 561

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +    K  G S +++++++HEF   D LH +  +I+Q+++ L  DL+  G+
Sbjct: 562 QKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGY 612


>gi|15225365|ref|NP_182015.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546766|sp|Q1PEU4.2|PP201_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g44880
 gi|2344896|gb|AAC31836.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255385|gb|AEC10479.1| Pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 191/523 (36%), Positives = 316/523 (60%), Gaps = 8/523 (1%)

Query: 65  MGLAIKVFND-IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLL 122
           +G A K+F+   Q  D  L N++I+A ++      +F ++ D++++  F  DNFT+  L 
Sbjct: 26  IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
           K+C+     +    +H+ I++ G+  D++V   ++D Y+K G +G   A+  F  M  R 
Sbjct: 86  KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGC--ARNAFDEMPHRS 143

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
            VSW ++I+G ++ GEL  A +LFD+MP  +D V +N ++DG+ K+G+M  A  LF+++ 
Sbjct: 144 EVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           H+ +++W+TM+ GY    D++ A+ LFD MP + LV W  +I GY +    +E  RL+ +
Sbjct: 204 HKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQE 263

Query: 302 ME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           M+    L PDD T++S+L A +++G L LG   H  + + +      VC A++DMY+KCG
Sbjct: 264 MQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCG 323

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            ++ A  +F+ M +K + SWNAM++G A++G    AL LF  M  E   PD+ T + V+ 
Sbjct: 324 EIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVIT 382

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC H G +++G ++F+ M R+ G+  ++EHYGCM+DLLGR+G LKEA  L+ +MP EPN 
Sbjct: 383 ACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG 441

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           II  + L AC ++  +E AE +L   + L+  + GNY +L N++AA   W+    V+  M
Sbjct: 442 IILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVM 501

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +K +A+K  G S +E++  V EF   D  HP    I+ ++  L
Sbjct: 502 RKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDL 544



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 85/383 (22%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q  QL +QI +     D Y++  ++   A   +MG A   F+++       +  LI   +
Sbjct: 96  QGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYI 155

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +      A ++F                               QM H          D+ 
Sbjct: 156 RCGELDLASKLF------------------------------DQMPHV--------KDVV 177

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           + N+++D + K G   ++ A++LF  M  + +++W +MI G     ++  AR+LFD MPE
Sbjct: 178 IYNAMMDGFVKSG--DMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPE 235

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIP------------------------------ 241
           R+ VSWNT++ GY +  +      LF+++                               
Sbjct: 236 RNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEW 295

Query: 242 ----------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                      + +   + ++  YSK G++E AK +FD MP K +  W  +I GYA  G 
Sbjct: 296 CHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGN 355

Query: 292 AKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           A+ A  L+  M  EE   KPD+ T+++++ AC   GL+  G K    + +          
Sbjct: 356 ARAALDLFVTMMIEE---KPDEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHY 412

Query: 350 NALVDMYAKCGSLDNAMSVFNGM 372
             +VD+  + GSL  A  +   M
Sbjct: 413 GCMVDLLGRAGSLKEAEDLITNM 435



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 117/264 (44%), Gaps = 16/264 (6%)

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFL 121
           + +  A K+F+ + + ++  +NT+I    QN    +  R+F +MQ       D+ T   +
Sbjct: 221 KDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGIRLFQEMQATTSLDPDDVTILSV 280

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L A +      L +  H  + +      + V  +++D YSKCG   +  AK++F  M E+
Sbjct: 281 LPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCG--EIEKAKRIFDEMPEK 338

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEM---PERDAVSWNTILDGYAKAGEMNLAFELFE 238
            + SWN+MI G    G    A  LF  M    + D ++   ++      G +    + F 
Sbjct: 339 QVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHGGLVEEGRKWFH 398

Query: 239 KIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK-GMAK 293
            +     +  I  +  MV    + G ++ A+ L   MP +   P  II+S +    G  K
Sbjct: 399 VMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFE---PNGIILSSFLSACGQYK 455

Query: 294 EAARLYDQMEEA-GLKP-DDGTLI 315
           +  R    +++A  L+P +DG  +
Sbjct: 456 DIERAERILKKAVELEPQNDGNYV 479


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 331/581 (56%), Gaps = 42/581 (7%)

Query: 24  LHKCKNLNQTKQLF---AQIIKLDLQR-DP-YIAPKLISSLALCRQMGLAIKVFND-IQD 77
           L +C      +QLF   AQII   +   DP  IA K I   +    +  ++ +FN  +  
Sbjct: 28  LLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSF 87

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLD--MQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           P++  YN L++A  Q++        F +  +       D +T+  +LKAC G       Q
Sbjct: 88  PNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H  + K G   ++FV NSL+D Y K G   +                           
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCI--------------------------- 180

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                 A++LFDEM  RD VSWNT++ GY  +G ++ A  +F+ +  +N+VSWSTM+ GY
Sbjct: 181 ------AQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGY 234

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTL 314
           ++ G++E A+ LF+ MP + +V W  +I+GYA+     +A  L+ QM+ E GL P+D TL
Sbjct: 235 ARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTL 294

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S+L+ACA  G L LG  +H  I + + +    + NAL DMYAKCG +  A  VF+ M +
Sbjct: 295 VSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHE 354

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D++SW+ ++ GLAM+G   +A   F+ M ++G  P+  +F+G+L ACTHAG +DKG++Y
Sbjct: 355 RDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEY 414

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M + YGI P++EHYGC++DLL R+GRL +A  L+ SMP++PN I+WG LLG CR + 
Sbjct: 415 FDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYK 474

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             E  E V+  ++ L  +  G+   L+N++A+ G  +  A+ RL+M+  ++ K  G S +
Sbjct: 475 DAERGERVVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWI 534

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           E++N V+EF + D  HP+S +IY MI  L   +K  G+  K
Sbjct: 535 EINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPK 575


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/525 (38%), Positives = 308/525 (58%), Gaps = 39/525 (7%)

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +I+DP   L+N +I++    +   +A  +F  M E GV  D F+   +LKAC+   +   
Sbjct: 54  EIKDP--FLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMSLVLKACSRLGFAKE 111

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +H  + K   + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI G 
Sbjct: 112 GMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLG--FARQVFDRMPQRDSVSYNSMIDGY 169

Query: 194 VKGGELSEARRLFDEMP--ERDAVSWNTILDGYA-KAGEMNLAFELFEKIPHRNIVSWST 250
           VK G +  A  LFD MP  +R+ ++WN+++ GYA +A  +N+A +LF+++P ++++SW++
Sbjct: 170 VKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVNVASKLFDEMPEKDLISWNS 229

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-------- 302
           M+ GY K G +E AK LFD MP + +V W I+I GY + G+  +A  L+DQM        
Sbjct: 230 MIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQAKTLFDQMPHRDVVAY 289

Query: 303 ------------------------EEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
                                   +E+ L PD+ TL+ +L+A A+ G L   + +H  I 
Sbjct: 290 NSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQLGRLTKAIDMHLYIV 349

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           + RF  +  +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+HG GE A  
Sbjct: 350 EKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFD 409

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HYGCM+D+L
Sbjct: 410 MLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 469

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI   G +P +Y 
Sbjct: 470 ARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVAKHLILQAGYNPSSYV 529

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           +LSN++A+ G W  V  VR  MK+ + +K  G S +E+D  VHEF
Sbjct: 530 LLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWIELDGRVHEF 574



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 14/216 (6%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACN 126
           A  +F+ +   DV  YN+++   VQN  + +A  VF  M+ E  +  D  T   +L A  
Sbjct: 274 AKTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIA 333

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                     +H  I +  +     +  +LID YSKCG   +  A ++F  +  + I  W
Sbjct: 334 QLGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCG--SIQHAMRVFEGIESKSIDHW 391

Query: 187 NSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAG---EMNLAFELF-- 237
           N+MI GL   G    A  +  ++  R    D +++  +L+  + +G   E  L FEL   
Sbjct: 392 NAMIGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRR 451

Query: 238 -EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             KI  R +  +  MV   ++ G +E+AK L + MP
Sbjct: 452 KHKIEPR-LQHYGCMVDILARSGSIELAKNLIEEMP 486


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/631 (33%), Positives = 351/631 (55%), Gaps = 54/631 (8%)

Query: 9   TWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           T FS    ++ +L +++ KC  L+  ++LF ++     QR+ +    LIS L     +  
Sbjct: 44  TQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP----QRNTFTWNSLISVLTKSGFLDE 99

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F  + +PD   +N+++    Q+    ++   F+ M  +    + +++   L AC G
Sbjct: 100 AARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAG 159

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
               ++   +HAL+ K  Y  D+++ ++LID YSKCG   V+ A+++F  M ER++V+WN
Sbjct: 160 LMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG--SVACAEEVFSGMIERNLVTWN 217

Query: 188 SMIAGLVKGGELSEARRLFDEM------PER----------------------------- 212
           S+I    + G  SEA  +F  M      P+                              
Sbjct: 218 SLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKT 277

Query: 213 -----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                D V  N ++D YAK  ++N A  +F+++  RN+VS ++MV GY++   ++ A+ +
Sbjct: 278 NKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFM 337

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F +M  + +V W  +I+GY + G  +EA RL+  ++   + P   T  ++L+ACA    L
Sbjct: 338 FSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADL 397

Query: 328 GLGMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            LG + H  + K  F+  +       V N+L+DMY KCGS+++   VF  M ++D VSWN
Sbjct: 398 LLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWN 457

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++ G A +G G +AL +F +M   G  PD  T +GVLCAC+HAG +++G  YF+SME +
Sbjct: 458 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-E 516

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +G++P  +HY CM+DLLGR+G L EA  L+++MPV P+A++WG+LL AC+ H  +E+ + 
Sbjct: 517 HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKH 576

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             + L+ +   + G Y +LSN++A  G W  V  VR  M++    K  G S +EV++ VH
Sbjct: 577 AAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVH 636

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ HP  +QIY ++  L + +K VG+
Sbjct: 637 VFLVKDKSHPHRKQIYSVLKMLTEQMKRVGY 667



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 142/514 (27%), Positives = 238/514 (46%), Gaps = 107/514 (20%)

Query: 106 MQEKGVFTDNF---TYPF--LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
           M + G+  D +   + PF  LL +C         +++HA I    +  +IF+ N LID Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
            KC  +    A+KLF  M +R+  +WNS+I+ L K G L EA RLF  MPE D  SWN++
Sbjct: 61  GKCDCL--DDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSM 118

Query: 221 LDGYAKAGEMNLAFELFEKIPHR------------------------------------- 243
           + G+A+      + E F K+ HR                                     
Sbjct: 119 VSGFAQHDRFEESLEYFVKM-HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR 177

Query: 244 ---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
              ++   S ++  YSK G +  A+ +F  M  + LV W  +I+ Y + G A EA  ++ 
Sbjct: 178 YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFV 237

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKC 359
           +M ++GL+PD+ TL S+++ACA    L  G+++HA + K  +F+ +  + NALVDMYAKC
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297

Query: 360 GSLDNAMSVFN-------------------------------GMTKKDLVSWNAMLYGLA 388
             ++ A  VF+                                MT++++VSWNA++ G  
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-----------THAGFIDKGVQYFYS 437
            +G+ E+AL LF  +K E   P  YTF  +L AC            H   + +G ++   
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSG 417

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH---- 493
            E D  +         +ID+  + G +++  R+ + M  E + + W  ++    ++    
Sbjct: 418 AESDIFV------GNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAIIVGYAQNGYGA 470

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            A+++  ++L C     G  P + TM+  + A +
Sbjct: 471 EALQIFRKMLVC-----GEKPDHVTMIGVLCACS 499


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/527 (38%), Positives = 304/527 (57%), Gaps = 39/527 (7%)

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +++DP  +L+N +I++    +   +A  +F  M E GV  D F+   ++KAC+   +   
Sbjct: 48  EVEDP--YLWNAMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKACSRLGFVKG 105

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI G 
Sbjct: 106 GLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLG--FARQIFDRMPQRDSVSYNSMIDGY 163

Query: 194 VKGGELSEARRLFD----------------------------------EMPERDAVSWNT 219
           VK G +  A  LFD                                  EMPE+D +SWN+
Sbjct: 164 VKCGSIESASELFDLMPREMKNLISWNSLISGYAQTSEGVDIASKLFAEMPEKDLISWNS 223

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++DGY K G +  A +LF+ +P R++V+W+TM+ GY+K G +  AK LFD+MP + +V +
Sbjct: 224 MIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAY 283

Query: 280 TIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
             +++GY +     EA  ++  ME E+ L PD+ TL+ +L+A A+ G L   M +H  I 
Sbjct: 284 NSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV 343

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           + +F     +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+HG GE A  
Sbjct: 344 EKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFD 403

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HYGCM+D+L
Sbjct: 404 MLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 463

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI     +P +Y 
Sbjct: 464 SRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQADYNPSSYV 523

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +LSN++A+ G W  V  VR  MK+ + +K  G S +E+D  VHEF V
Sbjct: 524 LLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGXVHEFFV 570



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 69/258 (26%), Positives = 112/258 (43%), Gaps = 18/258 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K   +   K LF  + +    RD      +I   A    +  A  +F+ +   DV  YN+
Sbjct: 230 KHGRIEDAKDLFDMVPR----RDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNS 285

Query: 86  LIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           ++   VQN  + +A  +F DM+ E  +  D  T   +L A            +H  I + 
Sbjct: 286 MMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEK 345

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
            +     +  +LID YSKCG   +  A  +F  +  + I  WN+MI GL   G    A  
Sbjct: 346 QFLLGGKLGVALIDMYSKCG--SIQHAMLVFEGIENKSIDHWNAMIGGLAIHGLGESAFD 403

Query: 205 LFDEMPER----DAVSWNTILDGYAKAG---EMNLAFELF---EKIPHRNIVSWSTMVWG 254
           +  ++  R    D +++  +L+  + +G   E  L FEL     KI  R +  +  MV  
Sbjct: 404 MLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPR-LQHYGCMVDI 462

Query: 255 YSKDGDMEMAKLLFDRMP 272
            S+ G +E+AK L + MP
Sbjct: 463 LSRSGSIELAKNLIEEMP 480


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/580 (34%), Positives = 326/580 (56%), Gaps = 51/580 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQD 77
           L     CK++   KQ+ ++ IK  +  +P I  K++S     R+ G    A ++F+ I +
Sbjct: 18  LSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILS-FCCSREFGDMCYARQLFDTIPE 76

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P V  +N + +   + +       ++L+M E+ V  D +TYPFL K         L + +
Sbjct: 77  PSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGREL 136

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G   ++F  N+LI+ YS CG++ +                             
Sbjct: 137 HCHVVKYGLDSNVFAHNALINMYSLCGLIDM----------------------------- 167

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
               AR +FD   + D V+WN ++ GY +                ++++SW+ +V G+  
Sbjct: 168 ----ARGIFDMSCKSDVVTWNAMISGYNRI--------------KKDVISWTAIVTGFVN 209

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A+  F +MP +  V WT +I GY      KEA  L+ +M+ + +KPD+ T++S+
Sbjct: 210 TGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSV 269

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA+ G L LG  +   I+K + K +T V NAL+DMY KCG+++ A+S+FN + ++D 
Sbjct: 270 LTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDK 329

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
            +W AM+ GLA++G GE+AL +FS+M      PD+ T+VGVL ACTH G +D+G ++F S
Sbjct: 330 FTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFAS 389

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M   +GI P + HYGCM+DLLG++G LKEA  ++++MP++PN+I+WG LLGACR H   E
Sbjct: 390 MTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAE 449

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           +AE  ++ ++ L+ ++   Y +  NI+AA   W+K+  +R  M     +K  G S +E++
Sbjct: 450 MAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMN 509

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             VHEF   DQ HP++++IY  +N +  DLK  G++   S
Sbjct: 510 GIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTS 549


>gi|357113878|ref|XP_003558728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 532

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/538 (36%), Positives = 312/538 (57%), Gaps = 41/538 (7%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +C++L Q KQ+ A ++      DP    +L+  S++A+   +  A  VF+ I  PD+ +Y
Sbjct: 17  RCRSLRQIKQVHALMVLRGFLSDPSALRELLFASAVAVRGAIAHAYLVFDQIPRPDLFMY 76

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKG----VFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           NTLIR     +    A  ++  M  +G    V  D  T+PF+L+AC           +HA
Sbjct: 77  NTLIRGAAHTAAPRDAVSLYARMARRGSCGGVRPDKITFPFVLRACTAMGAGGTGAQVHA 136

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   D FV N+LI  ++ CG +GV                               
Sbjct: 137 HVVKAGCESDAFVRNALIGMHASCGELGV------------------------------- 165

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
             A  LFD     DAV+W+ ++ G A+ G++  A +LF++ P ++ VSW+ M+  Y+K G
Sbjct: 166 --ASALFDGRAREDAVAWSAMITGCARRGDIVAARKLFDECPVKDHVSWNVMITAYAKRG 223

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           +M  A++LF+R+P + +V W  +ISG+   G    A  L++QM+  G KPD  T++S+L+
Sbjct: 224 EMAPARVLFNRIPERDVVSWNAMISGHVRCGSHVYAMELFEQMQRMGQKPDVVTMLSLLS 283

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ACA+SG + +G ++H+S+++   +    V   NAL+DMYAKCGS+ +A+ VF  M  KD+
Sbjct: 284 ACADSGDIDVGRRLHSSLSEMFLRTGFTVILGNALIDMYAKCGSMKSALQVFWVMRDKDV 343

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
            +WN+++ GLA+HG   +++ +F +M  E   PD+ TFV VL AC+H G +DKG +YF  
Sbjct: 344 STWNSIIGGLALHGHVLESIDVFKKMLKEKVRPDEITFVAVLIACSHGGMVDKGREYFNL 403

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M+  Y I P V+HYGCM+D+LGR+G LKEA   + +M VEPN++IW TLLGACR H  +E
Sbjct: 404 MQHHYRIEPNVKHYGCMVDMLGRAGLLKEAFEFIDTMKVEPNSVIWRTLLGACRVHGEIE 463

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           LAE     L++ +  + G+Y +LSNI+A+ G+W++   +R  M  +   K +G + V+
Sbjct: 464 LAEHANRQLLKARNDESGDYVLLSNIYASAGEWSESEKMRKLMDDSGVNKQAGRTVVD 521


>gi|297824523|ref|XP_002880144.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325983|gb|EFH56403.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 555

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/525 (36%), Positives = 315/525 (60%), Gaps = 12/525 (2%)

Query: 65  MGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPF 120
           +G A K+F+  Q P   D  L N++I+A ++      +F  + D++++     DNFT+  
Sbjct: 26  IGYARKLFD--QRPHREDSFLCNSMIKAYLETRHYNDSFAFYRDLRKETCLAPDNFTFTT 83

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           + K+C      +    +H+ I++ G+  D++V   ++D Y+K G +G   A+ +F  M +
Sbjct: 84  MTKSCTLSMCVYQGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGC--ARNVFDEMPQ 141

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEK 239
           R  VSW ++I G V+ GEL  A +LFD+MP+ +D V +N ++DG+ K+G+M  A  LF++
Sbjct: 142 RSEVSWTALICGYVRFGELDLASKLFDQMPQVKDVVIYNAMMDGFVKSGDMTSARRLFDE 201

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           + H+ +++W+TM+ GY    D++ A+ LFD MP + LV W  +I GY +    +EA RL+
Sbjct: 202 MTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPERNLVSWNTMIGGYCQNKQPQEAIRLF 261

Query: 300 DQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
            +M+    L PDD T++S+L A +++G L LG   H  + +        VC A++DMY+K
Sbjct: 262 QEMQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKNLDKKVKVCTAILDMYSK 321

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           CG ++ A  +F+ M +K + SWNAM++G A++G    AL LF  M  E   PD+ T + V
Sbjct: 322 CGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGNAHAALDLFLTMAKEE-KPDEITMLAV 380

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           + AC H G +++G ++F  M R +G+  ++EHYGCM+DLLGR+G LK+A  L+ +MP +P
Sbjct: 381 ISACNHGGLVEEGRKWF-QMMRKFGLNAKIEHYGCMVDLLGRAGNLKQAEHLITNMPFKP 439

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           N II  + L AC ++  +E AE +L   + L+  + GNY +L N++AA   W+    V+ 
Sbjct: 440 NGIILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKN 499

Query: 539 QMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            M+K  A+K  G S +E++  V EF   D  HP  + I+ ++  L
Sbjct: 500 MMRKNEAKKEVGCSLIEINYIVSEFISGDTTHPHRQSIHLVLEKL 544



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 159/384 (41%), Gaps = 81/384 (21%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q  QL +QI +     D Y++  ++   A   +MG A  VF+++       +  LI   V
Sbjct: 96  QGLQLHSQIWRSGFCADMYVSTGVVDMYAKFGKMGCARNVFDEMPQRSEVSWTALICGYV 155

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +      A ++F  M +                                        D+ 
Sbjct: 156 RFGELDLASKLFDQMPQ--------------------------------------VKDVV 177

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           + N+++D + K G   ++ A++LF  M  + +++W +MI G     ++  AR+LFD MPE
Sbjct: 178 IYNAMMDGFVKSG--DMTSARRLFDEMTHKTVITWTTMIHGYCNSNDIDSARKLFDAMPE 235

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIP------------------------------ 241
           R+ VSWNT++ GY +  +   A  LF+++                               
Sbjct: 236 RNLVSWNTMIGGYCQNKQPQEAIRLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEW 295

Query: 242 ----------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                      + +   + ++  YSK G++E AK +FD MP K +  W  +I GYA  G 
Sbjct: 296 CHCFVQRKNLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGN 355

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
           A  A  L+  M +   KPD+ T++++++AC   GL+  G K    + K+           
Sbjct: 356 AHAALDLFLTMAKEE-KPDEITMLAVISACNHGGLVEEGRKWFQMMRKFGLNAKIEHYGC 414

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKK 375
           +VD+  + G+L  A  +   M  K
Sbjct: 415 MVDLLGRAGNLKQAEHLITNMPFK 438


>gi|125564656|gb|EAZ10036.1| hypothetical protein OsI_32340 [Oryza sativa Indica Group]
          Length = 644

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/595 (33%), Positives = 328/595 (55%), Gaps = 45/595 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
           L +C ++++  QL A ++   +  D   +  L S  AL    G+  A ++F+ I DPD  
Sbjct: 19  LRRCGSVHRLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           +YN+LIRA   +    +A  +   M  +G+  + FT PFLLKAC     +  V + H ++
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+ G +FV N+L+ SY+  G +G S  ++ F  M +R++VSWNSMI G  + G   E
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDS--RRFFDEMVDRNVVSWNSMINGYAQAGNTRE 194

Query: 202 ARRLFDEMPER---------------------------------------DAVSWNTILD 222
           A  LF+ M  +                                       D +  N ++D
Sbjct: 195 ACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVD 254

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
            Y K G++ +A   F+ +P +N VSW++M+   +K   ++ A+  F+++P K+++ W  +
Sbjct: 255 MYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAM 314

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           IS Y + G   EA  LY++M+  GL PD+ TL ++L+AC + G L  G  +H  I     
Sbjct: 315 ISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFH 374

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                + N+L+DMYA+CG +D A+S+F+ M  K+++SWNA++  LAMHG+ + AL  F  
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M  + F PD+ TFV +L AC H G ++ G  YF +M   Y + P VEHY CM+DLLGR G
Sbjct: 435 MVSDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
           +L +A+ L++ MP+ P+ ++WG LLGACR H  +++ ++V+  L+ L+G   G + ++SN
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           +   T  W  +  +R  M++   +K  G SS+E ++ +HE       H  S+ +Y
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMY 609


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 325/585 (55%), Gaps = 14/585 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +  C N+ Q KQ+ A+ I   L    +I  K+I+S      +  A +VFN  Q+PD  +Y
Sbjct: 13  IETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQEPDGFIY 72

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           N +IRA   +     A  ++  M+  + +  D +TYPF+ KAC  +      + +H +I 
Sbjct: 73  NAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVEKGKEVHGVIV 132

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + GY  D F+ +SL++ Y  CG +G   A+++F     +D+V WN++I G  + G + ++
Sbjct: 133 RIGYELDGFLQSSLLNFYMVCGEIGN--AQQVFDEFDAKDVVFWNALITGYARQGMVLDS 190

Query: 203 RRLFDEMPERDAVSWN----------TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
             +F EM E   V  N           I     K G     + + + +    +   + ++
Sbjct: 191 FGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALI 250

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G ++ A+ LFD +P K  V W  +I GY + G   E   L  +M  + LKPD  
Sbjct: 251 NLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRF 310

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T+  +L+ACA+ G   LG  VH    K +   +  +  AL+DMYAKCG +  A  VF+ M
Sbjct: 311 TVSGVLSACAQMGAFNLGNWVHRFAEK-KGIWDVFIGTALIDMYAKCGFIGAARKVFDQM 369

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++++ +WNA+L G A HGQ E A+ LFS M++ G  PD  TF+ VL AC H+G ++ G 
Sbjct: 370 NERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGK 429

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           QYF  M + Y I P+VEHYGCM+DLLGR+G L+EA  L++ M VEPN ++WG LL AC  
Sbjct: 430 QYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLSACSI 489

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  +E+ E     +I+L   D G+Y +L+N++A+   +N+V  VR  M +    K  G S
Sbjct: 490 HGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMMVEKGICKSHGCS 549

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            +E+ + VHEF V D++HP+SE+IY +++ L K LK  G+   L+
Sbjct: 550 MIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVPLLA 594


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/609 (34%), Positives = 330/609 (54%), Gaps = 51/609 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA--------------LCRQMGLAI 69
           L KCK L+   Q+ A+++     ++ ++  K+I S +                R      
Sbjct: 22  LKKCKRLSDINQIHARLLTTGFIKNTFLTTKIILSFSTSLHAPLIEFARFIFFRHHAFEF 81

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
               + ++ D  L+N +I+         +A  +   M E G F D FT   +LKAC+   
Sbjct: 82  DEKEEEEEKDPFLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVG 141

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
                  IH L+ K  +  D+F+ N LI  Y KCG   +  A ++F  M +RD VS+NSM
Sbjct: 142 LVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGC--LVRASQVFDRMPKRDSVSYNSM 199

Query: 190 IAGLVKGGELSEARRLFD----------------------------------EMPERDAV 215
           I G VKGG +  AR +FD                                  +MPERD +
Sbjct: 200 IDGYVKGGRIDLARVVFDCIPLEERNLISWNSLIRGYAQSEDGILVAWQLFAKMPERDLI 259

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
           SWN+++DG  K G M  A  LF+++P+R+IVSW+ M+ GY+K+G +++A+ LFD MP + 
Sbjct: 260 SWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIARSLFDEMPERD 319

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLGLGMKVH 334
           +V +  ++ GY + G   EA  ++  M+  G    D+ TL+  L+A A+ G +  G+ +H
Sbjct: 320 VVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQLGHIDKGVAIH 379

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
             I +  F  +  +  AL+DMY+KCGS++NAM VF  + +K +  WNA++ GLA+HG GE
Sbjct: 380 RFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNAIIGGLAIHGLGE 439

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
            A      M+     PD  TF+G+L AC HAG + +G+  F  M R + + P+++HYGCM
Sbjct: 440 LAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVHKVEPKLQHYGCM 499

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +D+LGR+G ++EA   V+ MP EPN +IW +LL AC+ H +  + + V + L+RL    P
Sbjct: 500 VDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPVAENLMRLDSPSP 559

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
            +Y + SN++A  G WN V  VR  MK+   +K  G S +E++  V+ F V D+ HP+  
Sbjct: 560 SSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELEGHVYAFFVQDKSHPQFS 619

Query: 575 QIYQMINTL 583
            IY ++++L
Sbjct: 620 GIYSILDSL 628


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 338/628 (53%), Gaps = 47/628 (7%)

Query: 8   PT-WFSKRRLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-- 62
           PT W +   L++    L  L  C ++ + K++ AQ+I   L  D +   +L++  A+   
Sbjct: 42  PTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEW 101

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFL 121
           R +    K+ N+  + +V  +N  IR  V++     A  ++ +M  KG    DN+TYP L
Sbjct: 102 RNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLL 161

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
            K C G +       I   + + G+  D+FV N++I     CG   +  A+KLF     R
Sbjct: 162 FKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCG--ELLAARKLFDESCVR 219

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS------------------------- 216
           D+VSWNS+I G V+ G   EA  L+ +M E + +                          
Sbjct: 220 DLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH 279

Query: 217 --------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
                          N ++D Y K   +  A  LFE +  + +VSW+TMV GY+K G +E
Sbjct: 280 QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLE 339

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A  LF+ MP K +V W  +I G+ +   +KEA  L+ +M+ + + PD  T+++ L+AC+
Sbjct: 340 SAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           + G L +G+ +H  ++K+    N  +  ALVDMYAKCG++  A+ VF  M  ++ ++W A
Sbjct: 400 QLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTA 459

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++ GLA+HGQ   A+  FS M   G  PD+ TF+GVL AC H G +D+G  YFY M   Y
Sbjct: 460 IICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKY 519

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P+++HY C++DLLGR+G L+EA  L++SMP EP+A++WG L    R H  V + E  
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ L   D G Y +L+N++     W +   VR  M++   +K  G SS+E++  V++
Sbjct: 580 ASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYD 639

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           F + D+ HP+SE+IY+ +  L + ++ +
Sbjct: 640 FIIRDKSHPQSEKIYECLTRLTRQIEVI 667


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 343/631 (54%), Gaps = 53/631 (8%)

Query: 13  KRRLLE--EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-RQMGL-- 67
           KR LLE    L  L  CK+  Q  Q+ AQ I   L    +   +LIS  +L   + GL  
Sbjct: 3   KRFLLENPSSLCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDH 62

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACN 126
           +  +F+ I  P++ ++NT+IR   ++    +A  +++ M  KG+   +NFT+PFLL +C 
Sbjct: 63  SRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCA 122

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +       +H+ I K G+  D+FV N+LI  YS  G   ++LA+ LF     RD+VS+
Sbjct: 123 RLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFG--NLNLARTLFDESLVRDLVSY 180

Query: 187 NSMIAGLVKGGELSEARRLFDEMP------------------------------------ 210
           N+MI G  +  +   A  LF EM                                     
Sbjct: 181 NTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYK 240

Query: 211 -----ERDAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNIVSWSTMVWGYSKDGDMEMA 264
                + + +  + I+D YAK G +N+A  +F  +   ++  +WS+MV GY++ G++ +A
Sbjct: 241 NLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVA 300

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + LF+ M  + ++ WT +ISGY++ G   EA  L+ +ME  G+KPD+ TL+++L+ACA  
Sbjct: 301 RKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARL 360

Query: 325 GLLGLGMKV-HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN--GMTKKDLVSWN 381
           G   LG ++ H  I    F  NT +  A++DMYAKCGS+D+A+ +F   G   K    +N
Sbjct: 361 GAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFN 420

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ GLA HG GE A+ +F  +   G  PD+ TFVGVLCAC H+G I++G + F SM   
Sbjct: 421 SMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNA 480

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI PQ+EHYGCM+DLLGR G L+EA  LVQ MP E N++IW  LL ACR H  V++ E 
Sbjct: 481 YGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEI 540

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L+ ++      Y +LSNI A    W +   VR  M+    +KP G S +E+   +H
Sbjct: 541 AGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIH 600

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F   D+ HP+ ++I  M+  +   LK  G+
Sbjct: 601 RFVASDKSHPQGKEIELMLKDMAMRLKSAGY 631


>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
 gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/563 (36%), Positives = 324/563 (57%), Gaps = 6/563 (1%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF-NDIQDPDVHL 82
           L +C+      Q+ A I++  +  +  I  K I++         A  +F N     D  L
Sbjct: 9   LQRCRTRKTLLQIHALILRNAIDANVNILTKFITTCGQLSSTRHARHLFDNRSHRGDTFL 68

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALI 141
            N++I++ V     A AF ++ D++ +  F  DNFT+  L K C  +         H  +
Sbjct: 69  CNSMIKSHVVMRQLADAFTLYKDLRRETCFVPDNFTFTVLAKCCALRMAVWEGLETHGHV 128

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D++V  +L+D Y+K G +G  LA+K+F  M +R +VSW ++I G V+ G++  
Sbjct: 129 VKIGFCFDMYVSTALVDMYAKFGNLG--LARKVFNDMPDRSLVSWTALIGGYVRRGDMGN 186

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A  LF  MP RD+ ++N ++DGY K G+M  A  LF+++P RN++SW++M++GY  +GD+
Sbjct: 187 AWFLFKLMPGRDSAAFNLLIDGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDV 246

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL-KPDDGTLISILAA 320
             A+ LFD MP K LV W  +I GY +     EA +L+ +++ + + +P++ T++SIL A
Sbjct: 247 LSARFLFDAMPEKNLVSWNAMIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPA 306

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A  G L LG  VH  + + +     NVC +LVDMY KCG +  A  VF+ + KK+  +W
Sbjct: 307 IATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATW 366

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA++ G AM+G   +AL  FS M+ EG  P+  T  GVL AC+H G +++G   F +M  
Sbjct: 367 NALINGFAMNGLASEALEAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAM-I 425

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           + G+ P++EHYGC++DLLGR+G L EA  L++SMP E N II  +   AC   N V  A+
Sbjct: 426 ESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIILSSFSFACGFSNDVTRAQ 485

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            VL+  + ++  + G Y M+ N++A    W  V  +   M++  A+K  G+S++EVD+ V
Sbjct: 486 RVLNQAVNMEPGNNGIYVMMRNLYAMEERWKDVKEINGLMRRRGAKKEVGSSAIEVDSRV 545

Query: 561 HEFSVCDQLHPKSEQIYQMINTL 583
            EF      HP+ + I  +I  L
Sbjct: 546 SEFISGGIAHPQLDVIESVIGQL 568


>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g15300-like [Glycine max]
          Length = 555

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/489 (38%), Positives = 294/489 (60%), Gaps = 36/489 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+++F  I  PD  ++NT IR   Q+     A  ++  M  + V  DNFT+P +LKAC  
Sbjct: 60  AVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKACTK 119

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             W +   ++H  +++ G+  ++ V N+L+  ++KCG                       
Sbjct: 120 LFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCG----------------------- 156

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
                     +L  A  +FD+  + D V+W+ ++ GYA+ G++++A +LF+++P R++VS
Sbjct: 157 ----------DLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVS 206

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W+ M+  Y+K G+ME A+ LFD  P K +V W  ++ GY    + +EA  L+D+M E G 
Sbjct: 207 WNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEMCEVGE 266

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAM 366
            PD+ T++S+L+ACA+ G    G KVHA I +  + K +T + NALVDMYAKCG++   +
Sbjct: 267 CPDEVTMLSLLSACADLG--DXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGV 324

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VF  +  KD+VSWN+++ GLA HG  E++LGLF  M+     PD+ TFVGVL AC+H G
Sbjct: 325 CVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTG 384

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +D+G +YFY M+  Y I P + H GC++D+L R+G LKEA   + SM +EPNAI+W +L
Sbjct: 385 NVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAIVWRSL 444

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGAC+ H  VELA+   + L+R++    G+Y +LSN++A+ G+W+   NVR  M      
Sbjct: 445 LGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLSNVYASHGEWDGAENVRKLMDDNGVT 504

Query: 547 KPSGASSVE 555
           K  G+S VE
Sbjct: 505 KTRGSSFVE 513



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 211/495 (42%), Gaps = 80/495 (16%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +N    +  ++ +L    +  +   L+   A C  + +A  +F+D    DV  ++ LI  
Sbjct: 123 VNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWSALIAG 182

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q    + A ++F +M ++                                       D
Sbjct: 183 YAQRGDLSVARKLFDEMPKR---------------------------------------D 203

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +   N +I +Y+K G   +  A++LF     +D+VSWN+M+ G V      EA  LFDEM
Sbjct: 204 LVSWNVMITAYTKHG--EMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEM 261

Query: 210 PE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-----YSKDGD 260
            E     D V+  ++L   A  G+     ++  KI   N    ST++       Y+K G+
Sbjct: 262 CEVGECPDEVTMLSLLSACADLGDX--GEKVHAKIMELNKGKLSTLLGNALVDMYAKCGN 319

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +     +F  +  K +V W  +I G A  G A+E+  L+ +M+   + PD+ T + +LAA
Sbjct: 320 IGKGVCVFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAA 379

Query: 321 CAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLV 378
           C+ +G +  G +  +   NKY+ + N   C  +VDM A+ G L  A      M  + + +
Sbjct: 380 CSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIEPNAI 439

Query: 379 SWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
            W ++L    +HG  E   +A     RM+ +  G   Y  +  + A +H  +   G +  
Sbjct: 440 VWRSLLGACKVHGDVELAKRATEQLLRMRVDQSG--DYVLLSNVYA-SHGEW--DGAENV 494

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             +  D G+               R     EA R      +EPN +   TLLGAC  +  
Sbjct: 495 RKLMDDNGVTKT------------RGSSFVEAYR------IEPNPVNGRTLLGACIVYGD 536

Query: 496 VELAEEVLDCLIRLK 510
           VELA+ V + L+RL+
Sbjct: 537 VELAKRVNEELLRLR 551



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 109/268 (40%), Gaps = 43/268 (16%)

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A  +F ++P      W   I G ++      A  LY QM    +KPD+ T   +L AC
Sbjct: 58  QYAVQMFAQIPQPDTFMWNTYIRGSSQSHDPVHAVALYAQMTHRSVKPDNFTFPLVLKAC 117

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            +   +  G  VH  + +  F  N  V N L+  +AKCG L  A  +F+   K D+V+W+
Sbjct: 118 TKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCGDLKVANDIFDDSDKGDVVAWS 177

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++ G A  G    A  LF  M                                   +RD
Sbjct: 178 ALIAGYAQRGDLSVARKLFDEMP----------------------------------KRD 203

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
                 +  +  MI    + G ++ A RL    P++ + + W  ++G    HN  + A E
Sbjct: 204 ------LVSWNVMITAYTKHGEMECARRLFDEAPMK-DVVSWNAMVGGYVLHNLNQEALE 256

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           + D +  + G  P   TMLS + +A  D
Sbjct: 257 LFDEMCEV-GECPDEVTMLS-LLSACAD 282



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 155/372 (41%), Gaps = 67/372 (18%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  ++LF ++ K    RD      +I++     +M  A ++F++    DV  +N ++ 
Sbjct: 188 DLSVARKLFDEMPK----RDLVSWNVMITAYTKHGEMECARRLFDEAPMKDVVSWNAMVG 243

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V ++LN +A  +F +M E G   D  T   LL AC   +     + +HA I +     
Sbjct: 244 GYVLHNLNQEALELFDEMCEVGECPDEVTMLSLLSAC--ADLGDXGEKVHAKIMELNKGK 301

Query: 149 -DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               + N+L+D Y+KCG +G  +   +F  + ++D+VSWNS+I GL   G   E+  LF 
Sbjct: 302 LSTLLGNALVDMYAKCGNIGKGVC--VFWLIRDKDMVSWNSVIGGLAFHGHAEESLGLFR 359

Query: 208 EMPER----DAVSW------------------------------------NTILDGYAKA 227
           EM       D +++                                      ++D  A+A
Sbjct: 360 EMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYFYLMKNKYKIEPNIRHCGCVVDMLARA 419

Query: 228 GEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFD---RMPAKTLVPWTIII 283
           G +  AF+    +    N + W +++      GD+E+AK   +   RM       + ++ 
Sbjct: 420 GLLKEAFDFIASMKIEPNAIVWRSLLGACKVHGDVELAKRATEQLLRMRVDQSGDYVLLS 479

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI--------------SILAACAESGLLGL 329
           + YA  G    A  +   M++ G+    G+                ++L AC   G + L
Sbjct: 480 NVYASHGEWDGAENVRKLMDDNGVTKTRGSSFVEAYRIEPNPVNGRTLLGACIVYGDVEL 539

Query: 330 GMKVHASINKYR 341
             +V+  + + R
Sbjct: 540 AKRVNEELLRLR 551



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 92/201 (45%), Gaps = 22/201 (10%)

Query: 21  LQNLHKCKNL-NQTKQLFAQIIKLDLQR-DPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           L  L  C +L +  +++ A+I++L+  +    +   L+   A C  +G  + VF  I+D 
Sbjct: 274 LSLLSACADLGDXGEKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVFWLIRDK 333

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWF 131
           D+  +N++I     +    ++  +F +MQ   V  D  T+  +L AC+       G  +F
Sbjct: 334 DMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGNRYF 393

Query: 132 HLVQ---MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
           +L++    I   I  CG          ++D  ++ G++  +      M + E + + W S
Sbjct: 394 YLMKNKYKIEPNIRHCG---------CVVDMLARAGLLKEAFDFIASMKI-EPNAIVWRS 443

Query: 189 MIAGLVKGGELSEARRLFDEM 209
           ++      G++  A+R  +++
Sbjct: 444 LLGACKVHGDVELAKRATEQL 464


>gi|147791850|emb|CAN61826.1| hypothetical protein VITISV_027628 [Vitis vinifera]
          Length = 688

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/580 (36%), Positives = 332/580 (57%), Gaps = 19/580 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL--CRQMGLAIKVFNDIQDPDVHLY 83
           KC ++   K L AQII   L  +     KLIS  A+     +  A ++F+ I  P+  +Y
Sbjct: 123 KCSSMRGLKLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMY 182

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N+LIR    +     A  +F  M   G+  + FT PF+LKAC  K+ +    ++H L  K
Sbjct: 183 NSLIRGYSNSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIK 242

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G    +FV N+LI  Y  CG++    A+KLF  + ++ +VSWNSMI   + G ++    
Sbjct: 243 LGIGSLVFVQNALIAVYVVCGLI--HCARKLFDDITDKTLVSWNSMIE--ITGVKI---- 294

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
                    D +  N + D YAK G ++ A  +F++   +N+VSW++M+  Y++ G +E+
Sbjct: 295 ---------DIIVRNALXDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEV 345

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +FD+MP K +V W  +IS Y  +G  +EA  L+++M  + + PD+ TL+SILAAC++
Sbjct: 346 ARQIFDQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQ 405

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L +G K+H  I   +      + N+L+DMYAKCG +  A+ +F  M  K+LVSWN +
Sbjct: 406 LGDLVMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVI 465

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           +  LA+HG G +A+ LF  M+ +G  PD+ T  G+L AC+H+G +D G+ YF  M   Y 
Sbjct: 466 IGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYR 525

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           +  ++EHY CM+DLLGR G L EA+ L+  MP++P+ ++WG LLGACR H  VE+ +++L
Sbjct: 526 VXREIEHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQIL 585

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L+ L+    G Y ++SNI+     W  V  +R  M     +K    SS+E+D  ++EF
Sbjct: 586 KQLLELEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEF 645

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEG 603
            V D+ H  S  IY M++ L   L+  G+   +S+   E 
Sbjct: 646 MVDDKRHKISSSIYAMLDQLTDHLRSAGYLCNISSVFFEA 685


>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 641

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 321/570 (56%), Gaps = 45/570 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-QMGLAIKVFNDIQDPDVHLYNTLI 87
           ++   K+  A +I+    ++P     +I S AL R  +  A   F  I  P + ++N LI
Sbjct: 69  SIKSIKEQHAHLIRTHHHKNPKSMSNVIKSYALSRSHLNKANFAFIQIGQPTLLIFNYLI 128

Query: 88  RACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCG 145
           R   Q+    +A  ++ D M  +G+  DN T+ +L KAC+  K+  H  Q+ H  + K G
Sbjct: 129 RGLSQSENPNEAIVMYSDLMYNQGILGDNLTFIYLFKACSRVKDVLH-GQVFHVQVLKLG 187

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +   +F+ NSLI  Y   G +G   A+K+F  M +RD+VSWNS+I G  +     E   L
Sbjct: 188 FGSYLFIENSLIRMYGYFGELG--YAQKVFDKMDDRDLVSWNSLICGYSQCNRFKEVLDL 245

Query: 206 FDEMPER----DAVSW-----------------------------------NTILDGYAK 226
           F+ M E     D+V+                                    N+++D Y +
Sbjct: 246 FNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGR 305

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            G ++LA  +F+++  +NIVSW+ M+ GY+  GD+  AK LF+ MP + ++ WT +ISG 
Sbjct: 306 RGLVDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGC 365

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           A+     +A +L+ +M +A +KPD+ T+ S+L+AC+  GLL  G  VH  + ++  K + 
Sbjct: 366 AQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDV 425

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
            V NAL+DMY KCG +D A+ VF+ M KKD VSW +M+ GLA++G  +    LFS+M  +
Sbjct: 426 YVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRD 485

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  P   +F+G+L ACTHAG +DKG++YF SME  YG+ P+++HYGC++DLL RSG L  
Sbjct: 486 GLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDR 545

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A   ++ MPV P+ ++W  LL AC+ H  + LAE     L+ L  S+ GNY +LSN +A 
Sbjct: 546 AYEFIKQMPVVPDVVLWRILLSACKLHRNLVLAEIATSKLLELDPSNSGNYVLLSNTYAG 605

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           +  W+  + +R  M     QKPS  SS+EV
Sbjct: 606 SDRWDDASRMRDLMVVGDVQKPSSWSSIEV 635



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 188/406 (46%), Gaps = 43/406 (10%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + K++   +    Q++KL      +I   LI       ++G A KVF+ + D D+  +N+
Sbjct: 169 RVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQKVFDKMDDRDLVSWNS 228

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    Q +   +   +F  M+E  V  D+ T   ++ AC+      +V  +   I    
Sbjct: 229 LICGYSQCNRFKEVLDLFNLMREANVTADSVTMVKVILACSYLCEDGVVDSMVKYIEDKH 288

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D+++ NSLID Y + G+  V LA+++F  M E++IVSWN+M+ G    G+L  A++L
Sbjct: 289 VDIDVYLGNSLIDMYGRRGL--VDLARRVFDRMQEKNIVSWNAMLTGYATAGDLVAAKKL 346

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWG------- 254
           F+EMP R+ +SW  ++ G A+A + + A +LF+++   N+    ++ S+++         
Sbjct: 347 FNEMPIRNVISWTCMISGCAQANQCSDALKLFQEMMDANVKPDEITVSSVLSACSHLGLL 406

Query: 255 ----------------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
                                       Y K G ++ A  +F  M  K  V WT +I G 
Sbjct: 407 DTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCGVVDKALEVFHDMKKKDSVSWTSMILGL 466

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCN 345
           A  G       L+ QM   GL+P  G+ I IL AC  +GL+  G++   S+   Y  +  
Sbjct: 467 AVNGFVDNVFELFSQMLRDGLQPTHGSFIGILLACTHAGLVDKGLEYFESMEHVYGLRPE 526

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
                 +VD+ ++ G LD A      M    D+V W  +L    +H
Sbjct: 527 MKHYGCVVDLLSRSGELDRAYEFIKQMPVVPDVVLWRILLSACKLH 572


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/582 (36%), Positives = 322/582 (55%), Gaps = 60/582 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDP 78
           L  + +C    Q KQ+ AQ+++  L  DP+ A +LI++ AL     +  A +VF+ I  P
Sbjct: 39  LSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHP 98

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           +++ +NTLIRA   +S   Q+  +FL M  +   F D FT+PFL+KA +        +  
Sbjct: 99  NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAF 158

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H ++ K     D+F+ NSLI  Y+KCG +G  L  ++F+++  RD+VSWNSMI   V+GG
Sbjct: 159 HGMVIKVLLGSDVFILNSLIHFYAKCGELG--LGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 198 ELSEARRLFDEMPERDAVSW-NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
              EA  LF EM  +++++  N +LD Y K G +  A  LF+K+P ++IVSW+TM+ GY+
Sbjct: 217 CPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYA 276

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLI 315
           K G+ + A+ +FD MP + +  W  +IS Y + G  KEA  L+ +++     KPD+ TL 
Sbjct: 277 KIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTL- 335

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
                                  K   K N ++  +L+DMY KCG L  A+ VF+ + +K
Sbjct: 336 -----------------------KQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK 372

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+  W+AM+ GLAMHG G+ A+ LFS+M+++   P+  TF  +LCAC+H G +++G  +F
Sbjct: 373 DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 432

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             ME  YG                              MP+ P A +WG LLGAC  H  
Sbjct: 433 NQMELVYG-----------------------------KMPMAPAASVWGALLGACTIHEN 463

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           V LAE+    LI L+  + G Y +LSNI+A  G W++V+ +R  M+    +K  G SS+E
Sbjct: 464 VVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIE 523

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           VD  VHEF V D  HP +++IY  ++ +   L+ +G+    S
Sbjct: 524 VDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKS 565


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/613 (33%), Positives = 337/613 (54%), Gaps = 66/613 (10%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG----LAIKVFNDIQDPDVHL 82
           CK  +Q KQL +Q I   +  +P    KL   +  C ++G     A K+F  I +PDV +
Sbjct: 44  CKTTDQFKQLHSQSITRGVAPNPTFQKKLF--VFWCSRLGGHVSYAYKLFVKIPEPDVVV 101

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK---------ACNGKNWFHL 133
           +N +I+   +   + +  R++L+M ++GV  D+ T+PFLL          AC  K     
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK----- 156

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +H  + K G   +++V N+L+  YS CG++   +A+ +F    + D+ SWN MI+G 
Sbjct: 157 ---LHCHVVKFGLGSNLYVQNALVKMYSLCGLM--DMARGVFDRRCKEDVFSWNLMISGY 211

Query: 194 VKGGELSEARRLFDEMPERDAVS------------------------------------- 216
            +  E  E+  L  EM ER+ VS                                     
Sbjct: 212 NRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPS 270

Query: 217 ---WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
               N +++ YA  GEM++A  +F  +  R+++SW+++V GY + G++++A+  FD+MP 
Sbjct: 271 LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPV 330

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           +  + WTI+I GY   G   E+  ++ +M+ AG+ PD+ T++S+L ACA  G L +G  +
Sbjct: 331 RDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWI 390

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
              I+K + K +  V NAL+DMY KCG  + A  VF+ M ++D  +W AM+ GLA +GQG
Sbjct: 391 KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG 450

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++A+ +F +M+D    PD  T++GVL AC H+G +D+  ++F  M  D+ I P + HYGC
Sbjct: 451 QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D+LGR+G +KEA  +++ MP+ PN+I+WG LLGA R HN   +AE     ++ L+  +
Sbjct: 511 MVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDN 570

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
              Y +L NI+A    W  +  VR ++     +K  G S +EV+   HEF   D+ H +S
Sbjct: 571 GAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQS 630

Query: 574 EQIYQMINTLGKD 586
           E+IY  +  L ++
Sbjct: 631 EEIYMKLEELAQE 643



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 153/342 (44%), Gaps = 51/342 (14%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L    K K+ +  K++   + +   +    +   L+++ A C +M +A+++F  ++  DV
Sbjct: 243 LSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDV 302

Query: 81  HLYNTLIRACVQNS---------------------------LNAQAF----RVFLDMQEK 109
             + ++++  V+                             L A  F     +F +MQ  
Sbjct: 303 ISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSA 362

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           G+  D FT   +L AC       + + I   I K     D+ V N+LID Y KCG     
Sbjct: 363 GMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC--SE 420

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYA 225
            A+K+F  M +RD  +W +M+ GL   G+  EA ++F +M +     D +++  +L    
Sbjct: 421 KAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACN 480

Query: 226 KAGEMNLAFELFEKI--PHR---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPW 279
            +G ++ A + F K+   HR   ++V +  MV    + G ++ A  +  +MP     + W
Sbjct: 481 HSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVW 540

Query: 280 TIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             ++     + ++ MA+ AA+   ++E     PD+G + ++L
Sbjct: 541 GALLGASRLHNDEPMAELAAKKILELE-----PDNGAVYALL 577


>gi|91806359|gb|ABE65907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 555

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 190/523 (36%), Positives = 315/523 (60%), Gaps = 8/523 (1%)

Query: 65  MGLAIKVFND-IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLL 122
           +G A K+F+   Q  D  L N++I+A ++      +F ++ D++++  F  DNFT+  L 
Sbjct: 26  IGYARKLFDQRPQRDDSFLSNSMIKAYLETRQYPDSFALYRDLRKETCFAPDNFTFTTLT 85

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
           K+C+     +    +H+ I++ G+  D++V   ++D Y+K G +G   A+  F  M  R 
Sbjct: 86  KSCSLSMCVYQGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGC--ARNAFDEMPHRS 143

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
            VSW ++I+G ++ GEL  A +LFD+MP  +D V +N ++DG+ K+G+M  A  LF+++ 
Sbjct: 144 EVSWTALISGYIRCGELDLASKLFDQMPHVKDVVIYNAMMDGFVKSGDMTSARRLFDEMT 203

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           H+ +++W+TM+ GY    D++ A+ LFD MP + LV W  +I GY +    +E   L+ +
Sbjct: 204 HKTVITWTTMIHGYCNIKDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQE 263

Query: 302 ME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           M+    L PDD T++S+L A +++G L LG   H  + + +      VC A++DMY+KCG
Sbjct: 264 MQATTSLDPDDVTILSVLPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCG 323

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            ++ A  +F+ M +K + SWNAM++G A++G    AL LF  M  E   PD+ T + V+ 
Sbjct: 324 EIEKAKRIFDEMPEKQVASWNAMIHGYALNGNARAALDLFVTMMIEE-KPDEITMLAVIT 382

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC H G +++G ++F+ M R+ G+  ++EHYGCM+DLLGR+G LKEA  L+ +MP EPN 
Sbjct: 383 ACNHGGLVEEGRKWFHVM-REMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFEPNG 441

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           II  + L AC ++  +E AE +L   + L+  + GNY +L N++AA   W+    V+  M
Sbjct: 442 IILSSFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVM 501

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +K +A+K  G S +E++  V EF   D  HP    I+ ++  L
Sbjct: 502 RKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVLGDL 544



 Score =  111 bits (278), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 157/383 (40%), Gaps = 85/383 (22%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q  QL +QI +     D Y++  ++   A   +MG A   F+++       +  LI   +
Sbjct: 96  QGLQLHSQIWRFGFCADMYVSTGVVDMYAKFGKMGCARNAFDEMPHRSEVSWTALISGYI 155

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +      A ++F                               QM H          D+ 
Sbjct: 156 RCGELDLASKLF------------------------------DQMPHV--------KDVV 177

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           + N+++D + K G   ++ A++LF  M  + +++W +MI G     ++  AR+LFD MPE
Sbjct: 178 IYNAMMDGFVKSG--DMTSARRLFDEMTHKTVITWTTMIHGYCNIKDIDAARKLFDAMPE 235

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIP------------------------------ 241
           R+ VSWNT++ GY +  +      LF+++                               
Sbjct: 236 RNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSVLPAISDTGALSLGEW 295

Query: 242 ----------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                      + +   + ++  YSK G++E AK +FD MP K +  W  +I GYA  G 
Sbjct: 296 CHCFVQRKKLDKKVKVCTAILDMYSKCGEIEKAKRIFDEMPEKQVASWNAMIHGYALNGN 355

Query: 292 AKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           A+ A  L+  M  EE   KPD+ T+++++ AC   GL+  G K    + +          
Sbjct: 356 ARAALDLFVTMMIEE---KPDEITMLAVITACNHGGLVEEGRKWFHVMREMGLNAKIEHY 412

Query: 350 NALVDMYAKCGSLDNAMSVFNGM 372
             +VD+  + GSL  A  +   M
Sbjct: 413 GCMVDLLGRAGSLKEAEDLITNM 435



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/264 (23%), Positives = 116/264 (43%), Gaps = 16/264 (6%)

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFL 121
           + +  A K+F+ + + ++  +NT+I    QN    +   +F +MQ       D+ T   +
Sbjct: 221 KDIDAARKLFDAMPERNLVSWNTMIGGYCQNKQPQEGITLFQEMQATTSLDPDDVTILSV 280

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L A +      L +  H  + +      + V  +++D YSKCG   +  AK++F  M E+
Sbjct: 281 LPAISDTGALSLGEWCHCFVQRKKLDKKVKVCTAILDMYSKCG--EIEKAKRIFDEMPEK 338

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEM---PERDAVSWNTILDGYAKAGEMNLAFELFE 238
            + SWN+MI G    G    A  LF  M    + D ++   ++      G +    + F 
Sbjct: 339 QVASWNAMIHGYALNGNARAALDLFVTMMIEEKPDEITMLAVITACNHGGLVEEGRKWFH 398

Query: 239 KIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK-GMAK 293
            +     +  I  +  MV    + G ++ A+ L   MP +   P  II+S +    G  K
Sbjct: 399 VMREMGLNAKIEHYGCMVDLLGRAGSLKEAEDLITNMPFE---PNGIILSSFLSACGQYK 455

Query: 294 EAARLYDQMEEA-GLKP-DDGTLI 315
           +  R    +++A  L+P +DG  +
Sbjct: 456 DIERAERILKKAVELEPQNDGNYV 479


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 327/585 (55%), Gaps = 48/585 (8%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA-----------IKVFNDIQDPD 79
           +   ++ A++I   L ++P +  +++ +    R+  LA           +  F+  +  D
Sbjct: 6   DDXNKMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGED 65

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            +L+N +I++        +A  +F  M E GV  D F+   +LKAC+   +      IH 
Sbjct: 66  PYLWNAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKACSRLEFLKEGMQIHG 125

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI G VK G +
Sbjct: 126 FLRKTGIWSDLFLQNCLIGLYLKCGCLG--FARQVFDRMPQRDSVSYNSMIDGYVKCGLM 183

Query: 200 SEARRLFDEMPE--RDAVSWNTILDGYAKAGE-MNLAFELFEKIPHRNIVSWSTMVWGYS 256
             A +LFD MP   ++ +SWN+++ GYA+  + +N A +LF ++P ++++SW++M+ G  
Sbjct: 184 KSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMPEKDLISWNSMINGCV 243

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-------------- 302
           K G +E AK LFD MP + +V W  +I GYA+ G    A  L+DQM              
Sbjct: 244 KHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSMMAG 303

Query: 303 ------------------EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
                             +++ L PD+ TL+ +L+A A+ G L   M +H  I + RF  
Sbjct: 304 YVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYIVEKRFPL 363

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
              +  AL+DM++KCGS+ +A+SVF G+  K +  WNAM+ GLA+HG GE A  +  +++
Sbjct: 364 GGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNAMIGGLAIHGLGELAFDMLMQIE 423

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
                PD  TF+GVL AC+H+G + +G+  F  M R + I P+++HYGC++D+L RSG +
Sbjct: 424 RCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKHXIEPRLQHYGCLVDVLSRSGSI 483

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
           + A  L++ MP+EPN +IW + L AC  H   E  E V   LI   G +P +Y +LSN++
Sbjct: 484 ELAKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELVAKHLILQAGYNPSSYVLLSNMY 543

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           A+ G W  V  VR+ MK+ +  K  G S +E+D  VHEF V D+ 
Sbjct: 544 ASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFVQDKF 588


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 336/609 (55%), Gaps = 44/609 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIKVFNDIQDP 78
           L  L  CK+ +Q KQ+ AQ+I   L  D + + +LIS  A+   R +   IK+ N++Q+P
Sbjct: 57  LSLLENCKSFSQLKQIQAQMILTGLILDGFASSRLISFCAISESRNLDYCIKILNNLQNP 116

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           +V  +N +IR CV++    +   ++  M  + G   DN+TY FL K C      ++   I
Sbjct: 117 NVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLVLSYMGFEI 176

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
              + K G+  D+++ N +I      G  G  LA K+F     RD+VSWNS+I G V+  
Sbjct: 177 LGQVLKMGFDKDMYLYNGIIHMLVSVGESG--LAHKVFDEGCVRDLVSWNSLINGYVRRR 234

Query: 198 ELSEARRLFDEMPER----DAVSW-----------------------------------N 218
           +  EA  ++ +M       D V+                                    N
Sbjct: 235 QPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVN 294

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            ++D Y K G++     LF+ +  + +VSW+TM+ GY+K+G ++MA  LF  MP K +V 
Sbjct: 295 ALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVA 354

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I    +  ++ EA  L+ +M+ + +KPD  T++  L+AC++ G L  GM  H  I 
Sbjct: 355 WNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALDTGMWTHNYIK 414

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           K+    +  +  AL+DMYAKCG++  A+ VFN M +++ ++W A++ GLA++G    A+ 
Sbjct: 415 KHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLALYGNVNDAIF 474

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
            FS+M D G  PD+ TF+GVL AC H G +++G +YF  M+  + + PQ +HY CM++LL
Sbjct: 475 YFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLL 534

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           GR+G L+EA  L+++MP+E +A++WG L  AC  H  + + E     L+ L   D G Y 
Sbjct: 535 GRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLDLDPHDSGIYV 594

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           +L+N++   G W +  N+R  M +   +K  G+SS+EV+  ++EF V D+ HP+SEQIY+
Sbjct: 595 LLANMYREAGKWEEAQNIRKMMMERGVEKTPGSSSIEVNGIINEFIVRDKSHPQSEQIYE 654

Query: 579 MINTLGKDL 587
             N + K +
Sbjct: 655 CFNLINKTI 663



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/419 (22%), Positives = 171/419 (40%), Gaps = 76/419 (18%)

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS--EARRLFDE 208
           F+P  L++ +  C    +SL    F S  + +  SWN+    ++    LS  E  + F +
Sbjct: 14  FIPKPLLNPFFSC----LSLHSHSF-STHKSNPTSWNTTHTYVLSNPLLSLLENCKSFSQ 68

Query: 209 MPERDA--VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           + +  A  +    ILDG+A +                 ++S+  +    S+  +++    
Sbjct: 69  LKQIQAQMILTGLILDGFASS----------------RLISFCAI----SESRNLDYCIK 108

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESG 325
           + + +    +  W  +I G  E    ++   LY +M   AG +PD+ T   +   CA   
Sbjct: 109 ILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFKVCANLV 168

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
           L  +G ++   + K  F  +  + N ++ M    G    A  VF+    +DLVSWN+++ 
Sbjct: 169 LSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLIN 228

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH--------------------- 424
           G     Q  +A+G++ +M  E   PD+ T +GV+ AC                       
Sbjct: 229 GYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQLESLKLGREIHRYIEESGLNL 288

Query: 425 --------------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
                          G ++ G   F +M +       V  +  MI    ++G L  A +L
Sbjct: 289 KISLVNALMDMYVKCGDLEAGKVLFDNMRKK-----TVVSWTTMIVGYAKNGLLDMAGKL 343

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFAAT 527
              MP E N + W  ++G+C + N   L+ E L+    ++ S+  P   TML  + A +
Sbjct: 344 FHDMP-EKNVVAWNAMIGSCVQAN---LSFEALELFREMQWSNMKPDKVTMLHCLSACS 398


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 210/585 (35%), Positives = 327/585 (55%), Gaps = 52/585 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA---IKVFN----------DI 75
            + + +Q+ A++IK    ++  +  +++ + A  R+  LA     VF           ++
Sbjct: 2   QIRRCEQIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEV 61

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           +DP   L+N +I++        +A   F  M E GV  D F+   +LKAC+   +     
Sbjct: 62  EDP--FLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGM 119

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI G VK
Sbjct: 120 QIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLG--FARQIFDRMPQRDSVSYNSMIDGYVK 177

Query: 196 GGELSEARRLFD----------------------------------EMPERDAVSWNTIL 221
            G +  AR LFD                                  EMPE+D +SWN+++
Sbjct: 178 CGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLI 237

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           DGY K G M  A +LF  +P R++V+W+TM+ GY+K G +  AK LFD+MP + +V +  
Sbjct: 238 DGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNS 297

Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +++GY +     EA  +++ ME ++ L PD+ TL+ +L+A A+ G L   M ++  I + 
Sbjct: 298 MMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEK 357

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
            F     +  AL+DM++KCGS+  A+SVF G+  K +  WNAM+ GLA+HG GE A  + 
Sbjct: 358 SFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNAMIGGLAIHGHGELAFDML 417

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
            +++     PD  TF+GVL AC+H+G + +G+  F  M R + I P+++HYGC++D+L R
Sbjct: 418 MQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGCIVDILSR 477

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           SG ++ A  L++ MP+EPN +IW T L ACR     E+ E V   LI   G +P +Y +L
Sbjct: 478 SGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELVAKHLILQAGYNPSSYVLL 537

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           SN++A+ G W  V  VR+ MK+ +  K  G S +E+D  VHEF V
Sbjct: 538 SNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWIELDGNVHEFFV 582


>gi|115480595|ref|NP_001063891.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|113632124|dbj|BAF25805.1| Os09g0555400 [Oryza sativa Japonica Group]
 gi|125606583|gb|EAZ45619.1| hypothetical protein OsJ_30287 [Oryza sativa Japonica Group]
          Length = 644

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/595 (33%), Positives = 328/595 (55%), Gaps = 45/595 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
           L +C ++++  QL A ++   +  D   +  L S  AL    G+  A ++F+ I DPD  
Sbjct: 19  LRRCGSVHRLNQLHAHLVVHGV--DDVTSQILASYCALPAGGGVWYARQLFDRIPDPDRF 76

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           +YN+LIRA   +    +A  +   M  +G+  + FT PFLLKAC     +  V + H ++
Sbjct: 77  VYNSLIRAYCNSHCPQEALPLLRGMIRRGILPNEFTLPFLLKACARVQAWEHVMVTHGVV 136

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+ G +FV N+L+ SY+  G +G S  ++ F  M +R++VSWNSMI G  + G   E
Sbjct: 137 VKLGFVGQVFVGNALLHSYASAGSLGDS--RRFFDEMVDRNVVSWNSMINGYAQAGNTRE 194

Query: 202 ARRLFDEMPER---------------------------------------DAVSWNTILD 222
           A  LF+ M  +                                       D +  N ++D
Sbjct: 195 ACSLFEGMRRQGLLADEFTLVSLLFACSAEGNLEFGKLVHSHLLVRGCRIDLILANALVD 254

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
            Y K G++ +A   F+ +P +N VSW++M+   +K   ++ A+  F+++P K+++ W  +
Sbjct: 255 MYGKCGDLLMAHTCFDMMPFKNAVSWTSMLCALAKRASIDAARDWFEQIPEKSIISWNAM 314

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           IS Y + G   EA  LY++M+  GL PD+ TL ++L+AC + G L  G  +H  I     
Sbjct: 315 ISCYVQGGRFHEALDLYNRMKLLGLAPDEFTLAAVLSACGQLGDLASGKMIHDCIRDNFH 374

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                + N+L+DMYA+CG +D A+S+F+ M  K+++SWNA++  LAMHG+ + AL  F  
Sbjct: 375 NPGVALFNSLLDMYARCGQVDTAISLFSEMPSKNVISWNAIIGALAMHGRAQDALMFFRS 434

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M  + F PD+ TFV +L AC H G ++ G  YF +M   Y + P VEHY CM+DLLGR G
Sbjct: 435 MVFDAFPPDEITFVALLSACNHGGLLEAGQYYFQAMRHVYNVKPGVEHYACMVDLLGRGG 494

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
           +L +A+ L++ MP+ P+ ++WG LLGACR H  +++ ++V+  L+ L+G   G + ++SN
Sbjct: 495 QLAKAVDLIKDMPMRPDVVVWGALLGACRIHGHIQIGKQVIKQLLELEGMSGGLFVLISN 554

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           +   T  W  +  +R  M++   +K  G SS+E ++ +HE       H  S+ +Y
Sbjct: 555 MLYETHQWEDMKRLRKLMREWGMKKNMGVSSIETNSNIHESGAEGIGHESSDDMY 609


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/592 (35%), Positives = 327/592 (55%), Gaps = 56/592 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI-----------------SSLALCRQMG 66
           L  CK  +   +L A++I   L ++P +  +++                 +  A C    
Sbjct: 22  LGTCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASASSRRPFLAEFARCVFHE 81

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
             +    +++DP   L+N +I++        +A  +   M E GV  D F++   LKAC+
Sbjct: 82  HHVSSSGEVEDP--FLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKACS 139

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
              +      +H  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+
Sbjct: 140 RLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLG--FARQVFDRMPQRDSVSY 197

Query: 187 NSMIAGLVKGGELSEARRLFDEMP--ERDAVSWNTILDGYA-KAGEMNLAFELFEKIPHR 243
           NSMI G +K G +  A  LF  MP  +R+ ++WN+++ GYA +A  +N+A +LF+++P +
Sbjct: 198 NSMIDGYLKCGLVESAGELFGLMPREKRNLITWNSMIGGYAQRADGVNVAAKLFDEMPEK 257

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM- 302
           +++SW++M+ GY K G +E AK LFD MP + +V W I+I GY + G+  EA  L+DQM 
Sbjct: 258 DLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMP 317

Query: 303 -------------------------------EEAGLKPDDGTLISILAACAESGLLGLGM 331
                                          +E+ L PD+ +L+ +L+A A+ G L   +
Sbjct: 318 HRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAI 377

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
            +H  I + +F  +  +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+HG
Sbjct: 378 DMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHG 437

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            GE A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HY
Sbjct: 438 LGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 497

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           GCM+D+L RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI   G
Sbjct: 498 GCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILQAG 557

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
            +P +Y +LSN++A+ G W  V  VR  MK+   +K  G S +E+D  VHEF
Sbjct: 558 YNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEF 609


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/613 (33%), Positives = 337/613 (54%), Gaps = 66/613 (10%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG----LAIKVFNDIQDPDVHL 82
           CK  +Q KQL +Q I   +  +P    KL   +  C ++G     A K+F  I +PDV +
Sbjct: 44  CKTTDQFKQLHSQSITRGVAPNPTFQKKLF--VFWCSRLGGHVSYAYKLFVKIPEPDVVV 101

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK---------ACNGKNWFHL 133
           +N +I+   +   + +  R++L+M ++GV  D+ T+PFLL          AC  K     
Sbjct: 102 WNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKK----- 156

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +H  + K G   +++V N+L+  YS CG++   +A+ +F    + D+ SWN MI+G 
Sbjct: 157 ---LHCHVVKFGLGSNLYVQNALVKMYSLCGLM--DMARGVFDRRCKEDVFSWNLMISGY 211

Query: 194 VKGGELSEARRLFDEMPERDAVS------------------------------------- 216
            +  E  E+  L  EM ER+ VS                                     
Sbjct: 212 NRMKEYEESIELLVEM-ERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPS 270

Query: 217 ---WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
               N +++ YA  GEM++A  +F  +  R+++SW+++V GY + G++++A+  FD+MP 
Sbjct: 271 LRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPV 330

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           +  + WTI+I GY   G   E+  ++ +M+ AG+ PD+ T++S+L ACA  G L +G  +
Sbjct: 331 RDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWI 390

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
              I+K + K +  V NAL+DMY KCG  + A  VF+ M ++D  +W AM+ GLA +GQG
Sbjct: 391 KTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQG 450

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++A+ +F +M+D    PD  T++GVL AC H+G +D+  ++F  M  D+ I P + HYGC
Sbjct: 451 QEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGC 510

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D+LGR+G +KEA  +++ MP+ PN+I+WG LLGA R HN   +AE     ++ L+  +
Sbjct: 511 MVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDN 570

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
              Y +L NI+A    W  +  VR ++     +K  G S +EV+   HEF   D+ H +S
Sbjct: 571 GAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQS 630

Query: 574 EQIYQMINTLGKD 586
           E+IY  +  L ++
Sbjct: 631 EEIYMKLEELAQE 643



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 153/342 (44%), Gaps = 51/342 (14%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L    K K+ +  K++   + +   +    +   L+++ A C +M +A+++F  ++  DV
Sbjct: 243 LSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKARDV 302

Query: 81  HLYNTLIRACVQNS---------------------------LNAQAF----RVFLDMQEK 109
             + ++++  V+                             L A  F     +F +MQ  
Sbjct: 303 ISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSA 362

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           G+  D FT   +L AC       + + I   I K     D+ V N+LID Y KCG     
Sbjct: 363 GMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGC--SE 420

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYA 225
            A+K+F  M +RD  +W +M+ GL   G+  EA ++F +M +     D +++  +L    
Sbjct: 421 KAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACN 480

Query: 226 KAGEMNLAFELFEKI--PHR---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPW 279
            +G ++ A + F K+   HR   ++V +  MV    + G ++ A  +  +MP     + W
Sbjct: 481 HSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVW 540

Query: 280 TIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             ++     + ++ MA+ AA+   ++E     PD+G + ++L
Sbjct: 541 GALLGASRLHNDEPMAELAAKKILELE-----PDNGAVYALL 577


>gi|215741011|dbj|BAG97506.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 483

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/473 (41%), Positives = 289/473 (61%), Gaps = 4/473 (0%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+   V  D +T+P +LKAC       +  ++H    + G   D+F  N+LI  Y + G 
Sbjct: 1   MRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAVRTGLDADLFTRNALISFYCRIG- 59

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
                 +K+F   G RD+VSWNSM+AG V  GE+  A+ LFDEM +RDA SW T++DGY 
Sbjct: 60  -DCRSGRKVF-DHGVRDLVSWNSMVAGYVGCGEVDLAQDLFDEMRQRDAFSWATMIDGYG 117

Query: 226 K-AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
           + AG ++ A ELF+++P R++V W++M+ GY++ G M+ A++LF+ MP + ++ W+I+I 
Sbjct: 118 EMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVID 177

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GY   G   EA   + +M   G+KPD    +  +AACA+ G L  G  +H+ + K +   
Sbjct: 178 GYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLF 237

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  V  AL+DMY KCG LD A  +F  M KK +V+WN M+ GL  HG G  A+ LF++M+
Sbjct: 238 DVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQME 297

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            E    D  + + VL +CTHAG + +G+  FY ME+D G+ P+VEHYG +IDLLGR+GR+
Sbjct: 298 TERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGRV 357

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
            +A   +++MP+EP   +WG+LL +CR H  VELAE  ++ L  L   D G Y +LSNI+
Sbjct: 358 DQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNIY 417

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           A  G W+ V  +R  M     +K  G S +EVD ++HEF      HP  E+IY
Sbjct: 418 ADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIHEFVNGGSSHPHKEEIY 470



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 50/327 (15%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +++ ++LF Q+      RD      +I   A   +M  A  +F ++ + +V  ++ +I  
Sbjct: 123 VDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDG 178

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+     +A   F  M   G+  D       + AC         + +H+ + K     D
Sbjct: 179 YVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFD 238

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +LID Y KCG   + LAK +F SM ++ +V+WN MI GL   G   +A +LF++M
Sbjct: 239 VVVQTALIDMYVKCGR--LDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 296

Query: 210 P----------------------------------ERD------AVSWNTILDGYAKAGE 229
                                              E+D         +  ++D   +AG 
Sbjct: 297 ETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 356

Query: 230 MNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVPWTIIISG 285
           ++ A    E +P       W +++        +E+A+L  +R+    A     + ++ + 
Sbjct: 357 VDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNI 416

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA++GM  +  R+   M   G+K + G
Sbjct: 417 YADEGMWDDVFRIRKLMSAEGMKKNIG 443


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/626 (32%), Positives = 342/626 (54%), Gaps = 53/626 (8%)

Query: 11  FSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           FS    ++ +L + + KC +L   +Q+F ++     QR+ Y    +++ L     +  A 
Sbjct: 51  FSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMP----QRNIYTWNSVVTGLTKLGFLDEAD 106

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            +F  + + D   +N+++    Q+    +A   F  M ++G   + +++  +L AC+G N
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVLSACSGLN 166

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             +    +H+LI K  +  D+++ ++L+D YSKCG   V+ A+++F  MG+R++VSWNS+
Sbjct: 167 DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG--NVNDAQRVFDEMGDRNVVSWNSL 224

Query: 190 IAGLVKGGELSEARRLFDEMPE-------------------------------------- 211
           I    + G   EA  +F  M E                                      
Sbjct: 225 ITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDK 284

Query: 212 --RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
              D +  N  +D YAK   +  A  +F+ +P RN+++ ++M+ GY+     + A+L+F 
Sbjct: 285 LRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFT 344

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           +M  + +V W  +I+GY + G  +EA  L+  ++   + P   +  +IL ACA+   L L
Sbjct: 345 KMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHL 404

Query: 330 GMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           GM+ H  + K+ FK  +       V N+L+DMY KCG ++    VF  M ++D VSWNAM
Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAM 464

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G A +G G +AL LF  M + G  PD  T +GVL AC HAGF+++G  YF SM RD+G
Sbjct: 465 IIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFG 524

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           + P  +HY CM+DLLGR+G L+EA  +++ MP++P+++IWG+LL AC+ H  + L + V 
Sbjct: 525 VAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVA 584

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L+ ++ S+ G Y +LSN++A  G W  V NVR  M+K    K  G S +++    H F
Sbjct: 585 EKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVF 644

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKP 589
            V D+ HP+ +QI+ +++ L  +++P
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEMRP 670



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 136/498 (27%), Positives = 236/498 (47%), Gaps = 90/498 (18%)

Query: 112 FTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
           FTD+  +  LL +C   K     V+ +HA + K G+  +IF+ N LID+YSKCG   +  
Sbjct: 16  FTDSSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCG--SLED 73

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA--- 227
            +++F  M +R+I +WNS++ GL K G L EA  LF  MPERD  +WN+++ G+A+    
Sbjct: 74  GRQVFDKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRC 133

Query: 228 --------------------------------GEMNLAFELFEKIPHRNIVS----WSTM 251
                                            +MN   ++   I     +S     S +
Sbjct: 134 EEALCYFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSAL 193

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  YSK G++  A+ +FD M  + +V W  +I+ + + G A EA  ++  M E+ ++PD+
Sbjct: 194 VDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDE 253

Query: 312 GTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            TL S+++ACA    + +G +VH  + K  + + +  + NA VDMYAKC  +  A  +F+
Sbjct: 254 VTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFD 313

Query: 371 G-------------------------------MTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                                           M ++++VSWNA++ G   +G+ E+AL L
Sbjct: 314 SMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSL 373

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHY----GCM 454
           F  +K E   P  Y+F  +L AC     +  G+Q + + ++  +      E        +
Sbjct: 374 FCLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSL 433

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLK 510
           ID+  + G ++E   + + M +E + + W  ++    +    + A+EL  E+L+      
Sbjct: 434 IDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEALELFREMLE-----S 487

Query: 511 GSDPGNYTMLSNIFAATG 528
           G  P + TM+  + +A G
Sbjct: 488 GEKPDHITMI-GVLSACG 504


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/628 (33%), Positives = 337/628 (53%), Gaps = 47/628 (7%)

Query: 8   PT-WFSKRRLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-- 62
           PT W +   L++    L  L  C ++ + K++ AQ+I   L  D +   +L++  A+   
Sbjct: 42  PTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRLVAFCAISEW 101

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFL 121
           R +    K+ N+  + +   +N  IR  V++     A  ++ +M  KG    DN+TYP L
Sbjct: 102 RNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLL 161

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
            K C G +       I   + + G+  D+FV N++I     CG   +  A+KLF     R
Sbjct: 162 FKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCG--ELLAARKLFDESCVR 219

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS------------------------- 216
           D+VSWNS+I G V+ G   EA  L+ +M E + +                          
Sbjct: 220 DLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLH 279

Query: 217 --------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
                          N ++D Y K   +  A  LFE +  + +VSW+TMV GY+K G +E
Sbjct: 280 QSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLE 339

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A  LF+ MP K +V W  +I G+ +   +KEA  L+ +M+ + + PD  T+++ L+AC+
Sbjct: 340 SAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACS 399

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           + G L +G+ +H  ++K+    N  +  ALVDMYAKCG++  A+ VF  M  ++ ++W A
Sbjct: 400 QLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTA 459

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++ GLA+HGQ   A+  FS M   G  PD+ TF+GVL AC H G +D+G  YFY M   Y
Sbjct: 460 IICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKY 519

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P+++HY C++DLLGR+G L+EA  L++SMP EP+A++WG L    R H  V + E  
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ L   D G Y +L+N++     W +   VR  M++   +K  G SS+E++  V++
Sbjct: 580 ASKLLELDPHDGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMNGLVYD 639

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           F + D+ HP+SE+IY+ +  L + ++ +
Sbjct: 640 FIIRDKSHPQSEKIYECLTRLTRQIEVI 667


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/616 (34%), Positives = 321/616 (52%), Gaps = 62/616 (10%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIA-PKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           H    L QTKQ+ A IIK        I      S L+   Q    I  +     P     
Sbjct: 51  HDLSTLEQTKQIHAHIIKTHFHHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQP----- 105

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
                   +N+LN     V+  +++     DNF  P +LKAC   +W  L + IH  + K
Sbjct: 106 --------RNALN-----VYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLK 152

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+FV N+L+  Y +C  V    A+ +F  M ERD+VSW++MI  L +  E   A 
Sbjct: 153 KGLDRDVFVGNALMLMYGECACV--EYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMAL 210

Query: 204 RLFDEM------PERDAV-----------------------------------SWNTILD 222
            L  EM      P   A+                                   +   +LD
Sbjct: 211 ELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 270

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
            YAK G + LA +LF  +  + +VSW+ M+ G  +   +E A+ LFD    + ++ WT +
Sbjct: 271 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAM 330

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           +S YA+     +A  L+DQM  +G++P   T++S+L+ CA +G L LG  VH+ I+K R 
Sbjct: 331 LSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERV 390

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
           + +  +  ALVDMYAKCG ++ A  +F     +D+  WNA++ G AMHG GE+AL +F+ 
Sbjct: 391 EVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAE 450

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M+ +G  P+  TF+G+L AC+HAG + +G + F  M   +G++PQ+EHYGCM+DLLGR+G
Sbjct: 451 MERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAG 510

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
            L EA  +++SMP++PN I+WG L+ ACR H   +L E     L+ ++  + G   ++SN
Sbjct: 511 LLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSN 570

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
           I+AA   W+  A VR  MK    +K  G S +EV+  VHEF + DQ HP+  +I +M+  
Sbjct: 571 IYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAE 630

Query: 583 LGKDLKPVGHAAKLSA 598
           + + L   G+    S 
Sbjct: 631 MRRKLNEAGYVPDTST 646


>gi|357126462|ref|XP_003564906.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 582

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/507 (40%), Positives = 294/507 (57%), Gaps = 10/507 (1%)

Query: 79  DVHLYNTLIRACVQNS-LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           D   +NTLIR     S  NA A+  F  M+   V  D +T+P +LKAC       L   +
Sbjct: 77  DAFPWNTLIRLHAPASPRNALAY--FACMRRAAVEPDAYTFPAVLKACACGV---LGLPV 131

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           HA   + G  GD+F  N+L+  Y + G       +K+F   G RD+VSWNSM+AG V  G
Sbjct: 132 HAEAVRTGMDGDLFTRNALVSFYCRIG--DCRSGRKVF-DHGARDLVSWNSMVAGYVACG 188

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           EL  A+ LFD MP RDA SW T++D Y K +G ++ A ELF++ P+R++V W +M+ GY+
Sbjct: 189 ELELAQELFDGMPLRDAFSWATMIDAYGKRSGGVDRARELFDETPNRDLVCWCSMIDGYA 248

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           + G M+ A+ LF+ MP + ++ W+I++ GY   G   EA  L+ +M   G+KPD    + 
Sbjct: 249 RQGRMDEARALFEEMPERNVISWSIVVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVG 308

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
              ACA+ G L  G  +H+ + K +   +  V  AL+DMY KCG LD    +F  M  K 
Sbjct: 309 AFTACAQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYMKCGRLDLGKLIFESMPDKS 368

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +V+WN M+ GL  H  G  A+ LF +M+ EG   D  + + VL ACTHAG I +G+  F+
Sbjct: 369 VVTWNVMIIGLGTHSCGLHAVKLFYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFH 428

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M +D+G+ P+VEHYG ++DLLGR+G L  A   +++MP+EP   +WG+LL ACR H  V
Sbjct: 429 RMRKDFGMDPKVEHYGALVDLLGRAGHLDHARHAIETMPMEPTPELWGSLLAACRSHRCV 488

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ELAE  ++ L  L   D G Y +LSNI+A  G W+ V  +R  M     +K  G S +EV
Sbjct: 489 ELAELSVERLASLGADDFGVYVLLSNIYADEGMWDGVFRIRRLMSAEGMKKDIGRSVIEV 548

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTL 583
           D + HEF      H   ++++ M+  L
Sbjct: 549 DGQTHEFVNGGSSHSCKDEVHLMLQNL 575



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/331 (20%), Positives = 130/331 (39%), Gaps = 50/331 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +   +++ ++LF +       RD      +I   A   +M  A  +F ++ + +V  ++ 
Sbjct: 218 RSGGVDRARELFDETP----NRDLVCWCSMIDGYARQGRMDEARALFEEMPERNVISWSI 273

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++   V+    ++A  +F  M   G+  D         AC         + +H+ + K  
Sbjct: 274 VVDGYVRCGEPSEALELFQRMLRCGIKPDRVAAVGAFTACAQLGALEQGRWLHSYLEKKK 333

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL------------ 193
              D+ V  +LID Y KCG   + L K +F SM ++ +V+WN MI GL            
Sbjct: 334 VLFDVVVQTALIDMYMKCG--RLDLGKLIFESMPDKSVVTWNVMIIGLGTHSCGLHAVKL 391

Query: 194 -----------------------VKGGELSEARRLFDEMPERDAVS-----WNTILDGYA 225
                                     G +SE   +F  M +   +      +  ++D   
Sbjct: 392 FYQMEAEGAPIDDLSVLAVLTACTHAGLISEGLGIFHRMRKDFGMDPKVEHYGALVDLLG 451

Query: 226 KAGEMNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVPWTI 281
           +AG ++ A    E +P       W +++        +E+A+L  +R+    A     + +
Sbjct: 452 RAGHLDHARHAIETMPMEPTPELWGSLLAACRSHRCVELAELSVERLASLGADDFGVYVL 511

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           + + YA++GM     R+   M   G+K D G
Sbjct: 512 LSNIYADEGMWDGVFRIRRLMSAEGMKKDIG 542


>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
 gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/543 (36%), Positives = 320/543 (58%), Gaps = 43/543 (7%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHL 82
             CKN+   KQ+ A ++   L  +  +  +LI  +SL++   +  A K+F++I  PDV +
Sbjct: 20  QNCKNIRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSI 79

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
            N ++R   Q+    +   ++ +M+++GV  D +T+ F+LKAC+   W       H  + 
Sbjct: 80  CNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVV 139

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G+  + +V N+LI  ++ CG +G+  A +LF    +   V+W+SM +G  K G++ EA
Sbjct: 140 RHGFVLNEYVKNALILFHANCGDLGI--ASELFDDSAKAHKVAWSSMTSGYAKRGKIDEA 197

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
            RLFDEMP +D V+WN ++ G  K  EM+ A ELF++   +++V+W+ M           
Sbjct: 198 MRLFDEMPYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAM----------- 246

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
                               ISGY   G  KEA  ++ +M +AG  PD  T++S+L+ACA
Sbjct: 247 --------------------ISGYVNCGYPKEALGIFKEMRDAGEHPDVVTILSLLSACA 286

Query: 323 ESGLLGLGMKVH------ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
             G L  G ++H      AS++   +   T + NAL+DMYAKCGS+D A+ VF G+  +D
Sbjct: 287 VLGDLETGKRLHIYILETASVSSSIY-VGTPIWNALIDMYAKCGSIDRAIEVFRGVKDRD 345

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L +WN ++ GLA+H   E ++ +F  M+     P++ TF+GV+ AC+H+G +D+G +YF 
Sbjct: 346 LSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFS 404

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M   Y I P ++HYGCM+D+LGR+G+L+EA   V+SM +EPNAI+W TLLGAC+ +  V
Sbjct: 405 LMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           EL +   + L+ ++  + G+Y +LSNI+A+TG W+ V  VR     TR +KP+G S +E 
Sbjct: 465 ELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGVSLIEE 524

Query: 557 DNE 559
           D++
Sbjct: 525 DDD 527


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 322/584 (55%), Gaps = 45/584 (7%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA--LCRQMGLAIKVFNDIQD 77
           KL +     +L    QL A +++    +D Y++  L+   A         A+KVF+ I +
Sbjct: 36  KLFDSKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPN 95

Query: 78  PDVHLYNTLIRACVQNSLNAQAF----RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           P+V ++N +I+ C++N+   +A     R+ +D +      + FTYP L KAC+       
Sbjct: 96  PNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR-----PNKFTYPTLFKACSVAQAVQE 150

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + IH  + K G   D+ + ++ I  Y+  G                             
Sbjct: 151 GRQIHGHVVKHGIGSDVHIKSAGIQMYASFG----------------------------- 181

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                L +AR++F    E D V WNT++DGY K G +  A  LF ++P +NI SW+ M+ 
Sbjct: 182 ----RLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMIN 236

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           G +K G++  A+ LFD M  +  + W+ ++ GY   G  KEA  ++ QM+    +P    
Sbjct: 237 GLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFI 296

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S+LAAC+  G +  G  VHA + +   K +  +  AL+DMYAKCG LD    VF  M 
Sbjct: 297 LSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK 356

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           ++++ +WNAM+ GLA+HG+ E AL LFS++++    P+  T VGVL AC HAGF+DKG++
Sbjct: 357 EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLR 416

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F +M   YG+ P++EHYGCM+DLLGRSG   EA  L+ SMP++PNA +WG LLGACR H
Sbjct: 417 IFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIH 476

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
              +LAE V   L+ L+  + G Y +LSNI+A  G ++ V+ +R  MK    +   G S 
Sbjct: 477 GNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSI 536

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           V+++  VHEF + D  HP+ ++IY+ +  + + L+  GH+   S
Sbjct: 537 VDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTS 580


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 321/590 (54%), Gaps = 54/590 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI---------------SSLALCRQMGLA 68
           L  CK  +   +L A++I   L ++P +  +++               +  A C      
Sbjct: 2   LGSCKTSHDLNKLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARCVFHEHH 61

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
           +    +++DP   L+N +I++        +A  +   M E  V  D F+    LKAC+  
Sbjct: 62  VSSSGEVEDP--FLWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKACSRL 119

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
            +      +H  + K G + D+F+ N LI  Y KCG +G   A+++F  M ERD VS+NS
Sbjct: 120 GFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLG--FARQVFDRMPERDSVSYNS 177

Query: 189 MIAGLVK------GGELSE----------------------------ARRLFDEMPERDA 214
           MI G VK       GEL +                            A +LFDEMPE+D 
Sbjct: 178 MIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYAQRADGVDVAEKLFDEMPEKDL 237

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +SWN+++ GY K G +  A  LF  +P R++V+W+ M+ GY K G + +AK LFD+MP +
Sbjct: 238 ISWNSMIGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHR 297

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKV 333
            +V +  ++SGY +     EA  +++ ME E+ L PD+ +L+ +L+A A+ G L   + +
Sbjct: 298 DVVAYNSMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDM 357

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  I + +F  +  +  AL+DMY+KCGS+ +AM VF G+  K +  WNAM+ GLA+HG G
Sbjct: 358 HLYIVEKQFPLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLG 417

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           E A  +  +++     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HYGC
Sbjct: 418 ESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 477

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D+L RSG +K A  L++ MP+EPN +IW T L AC  H   E  E V   LI   G +
Sbjct: 478 MVDILARSGSIKLARNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLILXGGYN 537

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           P +Y +LSN++A+ G W  V  VR  MK+   +K  G S +E+D  VHEF
Sbjct: 538 PSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWIELDGRVHEF 587


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 310/578 (53%), Gaps = 41/578 (7%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           Q L    +L   + + ++II  DL+ +  +  KL+ + A  + +  A KVF++I + +V 
Sbjct: 48  QVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVI 107

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           + N +IR+ V N    +  +VF  M    V  D++T+P +LKAC+      + + IH   
Sbjct: 108 IINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSA 167

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G    +FV N L+  Y KCG                                  LSE
Sbjct: 168 TKVGLSSTLFVGNGLVSMYGKCGF---------------------------------LSE 194

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-----KIPHR--NIVSWSTMVWG 254
           AR + DEM  RD VSWN+++ GYA+    + A E+       KI H    + S    V  
Sbjct: 195 ARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 254

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            + +  M +  + F +M  K+LV W ++I  Y +  M  EA  LY  ME  G +PD  ++
Sbjct: 255 TTTENVMYVKDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSI 313

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S+L AC ++  L LG K+H  I + +   N  + NAL+DMYAKCG LD A  VF  M  
Sbjct: 314 TSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKS 373

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D+VSW AM+      G+G  A+ LFS+M+D G  PD   FV  L AC+HAG +++G   
Sbjct: 374 RDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC 433

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M   Y I P++EH  CM+DLLGR+G++KEA + +Q MP+EPN  +WG LLGACR H+
Sbjct: 434 FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHS 493

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             ++     D L +L     G Y +LSNI+A  G W +V N+R  MK    +K  GAS+V
Sbjct: 494 NTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 553

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EV+  +H F V D+ HP+S +IY+ ++ L K +K +G+
Sbjct: 554 EVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGY 591


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/527 (38%), Positives = 297/527 (56%), Gaps = 39/527 (7%)

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +++DP   L+N +I++        +A   F  M E GV  D F+   +LKAC+   +   
Sbjct: 57  EVEDP--FLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQE 114

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI G 
Sbjct: 115 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLG--FARQIFDRMPQRDSVSYNSMIDGY 172

Query: 194 VKGGELSEARRLFD----------------------------------EMPERDAVSWNT 219
           VK G +  AR LFD                                  EMPE+D +SWN+
Sbjct: 173 VKCGLIGSARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNS 232

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++DGY K G M  A +LF  +P R++V+W+TM+ GY+K G +  AK LFD+MP + +V +
Sbjct: 233 LIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAY 292

Query: 280 TIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
             +++GY +     EA  ++  ME E+ L PD+ TL+ +L+A A+ G L   M +H  I 
Sbjct: 293 NSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV 352

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           + +F     +  AL+DMY+KCGS+  AM VF  +  K +  WNAM+ GLA+HG GE A  
Sbjct: 353 EKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFD 412

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           +   ++     PD  TFVG+L AC+H+G + +G+  F  M R + I P+++HYGCM+D+L
Sbjct: 413 MLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDIL 472

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            RSG ++ A  L++ MP+EPN +IW T L AC  H   E  E V   LI   G +P +Y 
Sbjct: 473 SRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYV 532

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +LSN++A+ G W     VR  MK+   QK  G S +E+D  VHEF V
Sbjct: 533 LLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWIELDGRVHEFFV 579



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 166/380 (43%), Gaps = 67/380 (17%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           + +A K+F ++ + D+  +N+LI   V++     A  +F  M  + V T           
Sbjct: 212 VNIASKLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVT----------- 260

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
                W                        ++ID Y+K G   V  AK LF  M  RD+V
Sbjct: 261 -----W-----------------------ATMIDGYAKLGF--VHKAKTLFDQMPHRDVV 290

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPER-----DAVSWNTILDGYAKAGEMNLAFELFEK 239
           ++NSM+AG V+     EA  +F +M +      D  +   +L   A+ G ++ A ++   
Sbjct: 291 AYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDM--- 347

Query: 240 IPHRNIVSWSTMVWG---------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
             H  IV     + G         YSK G ++ A L+F+R+  K++  W  +I G A  G
Sbjct: 348 --HLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNAMIGGLAIHG 405

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVC 349
           + + A  +  ++E   +KPDD T + IL AC+ SGL+  G+     +  K++ +      
Sbjct: 406 LGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKHKIEPRLQHY 465

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEG 407
             +VD+ ++ GS++ A ++   M  + + V W   L   + H + E    +   +    G
Sbjct: 466 GCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVVAKHLILQAG 525

Query: 408 FGPDKYTFVGVLCACTHAGF 427
           + P  Y    VL +  +A F
Sbjct: 526 YNPSSY----VLLSNMYASF 541



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 130/313 (41%), Gaps = 49/313 (15%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      +I   A    +  A  +F+ +   DV  YN+++   VQN  N +A  +F D
Sbjct: 255 RRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSD 314

Query: 106 MQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           M+ E  +  D  T   +L A            +H  I +  +F    +  +LID YSKCG
Sbjct: 315 MEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCG 374

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTI 220
              +  A  +F  +  + I  WN+MI GL   G    A  +  E+  R    D +++  I
Sbjct: 375 --SIQQAMLVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGI 432

Query: 221 LDGYAKAG---EMNLAFELF---EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP-- 272
           L+  + +G   E  L FEL     KI  R +  +  MV   S+ G +E+AK L + MP  
Sbjct: 433 LNACSHSGLVKEGLLCFELMRRKHKIEPR-LQHYGCMVDILSRSGSIELAKNLIEEMPME 491

Query: 273 -------------------------AKTLV--------PWTIIISGYAEKGMAKEAARLY 299
                                    AK L+         + ++ + YA  GM K+A R+ 
Sbjct: 492 PNDVIWRTFLTACSHHKEFETGEVVAKHLILQAGYNPSSYVLLSNMYASFGMWKDARRVR 551

Query: 300 DQMEEAGLKPDDG 312
             M+E  L+   G
Sbjct: 552 TMMKERELQKVPG 564


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/625 (32%), Positives = 338/625 (54%), Gaps = 53/625 (8%)

Query: 11  FSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           FS    ++ +L + + KC +L   +QLF ++     QR+ +    +++ L     +  A 
Sbjct: 51  FSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMP----QRNVFTWNSVVTGLTKLGFLDEAD 106

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            +F  + + D   +N+++    Q+    +A   F  M ++G   + +T+   L AC+G N
Sbjct: 107 SLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLN 166

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             +    IH+LI K     D+++ ++L+D YSKCG   V+ A+++F  MG+R++VSWNS+
Sbjct: 167 DMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG--NVNDAQQVFDEMGDRNVVSWNSL 224

Query: 190 IAGLVKGGELSEARRLFDEMPE-------------------------------------- 211
           I    + G   EA ++F  M E                                      
Sbjct: 225 ITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDK 284

Query: 212 --RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
              D +  N  +D YAK   +  A  +F+ +P RN+++ ++MV GY+     + A+L+F 
Sbjct: 285 LRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFT 344

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           +M  + +V W  +I+GY + G  +EA  L+  ++   + P   T  +IL ACA+   L L
Sbjct: 345 KMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHL 404

Query: 330 GMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           GM+ H  + K+ FK  +       V N+L+DMY KCG ++    VF  M ++D VSWNAM
Sbjct: 405 GMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAM 464

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G A +G G +AL LF  M D G  PD  T +GVL AC HAGF+++G  YF SM RD+G
Sbjct: 465 IIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFG 524

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           + P  +HY CM+DLLGR+G L+EA  +++ MPV+P+++IWG+LL AC+ H  + L + V 
Sbjct: 525 VAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVA 584

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L  ++ S+ G Y +LSN++A  G W    NVR  M+K    K  G S +++    H F
Sbjct: 585 EKLFEVETSNSGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWIKIPGHAHVF 644

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLK 588
            V D+ HP+ +QI+ +++ L  +++
Sbjct: 645 MVKDKSHPRKKQIHSLLDILIAEMR 669



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 244/512 (47%), Gaps = 91/512 (17%)

Query: 99  AFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHL-VQMIHALIYKCGYFGDIFVPNSL 156
           A ++FL +  +   FT +  +  LL +C       + V+ +HA + K G+  ++F+ N L
Sbjct: 2   ARKIFLKLAGDLSSFTVSSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRL 61

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS 216
           ID+Y+KCG   +   ++LF  M +R++ +WNS++ GL K G L EA  LF  MPERD  +
Sbjct: 62  IDAYAKCG--SLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCT 119

Query: 217 WNTILDGYAKA-----------------------------------GEMNLAFELFEKIP 241
           WN+++ G+A+                                     +MN   ++   I 
Sbjct: 120 WNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIA 179

Query: 242 HRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
               +S     S +V  YSK G++  A+ +FD M  + +V W  +I+ Y + G A EA +
Sbjct: 180 KSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALK 239

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMY 356
           ++  M E+ ++PD+ TL S+++ACA    + +G +VHA + K  + + +  + NA VDMY
Sbjct: 240 VFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMY 299

Query: 357 AKCGSLDNAMSVFNG-------------------------------MTKKDLVSWNAMLY 385
           AKC  +  A  +F+                                M ++++VSWNA++ 
Sbjct: 300 AKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIA 359

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
           G   +G+ E+AL LF  +K E   P  YTF  +L AC     +  G+Q + + ++  +  
Sbjct: 360 GYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKF 419

Query: 445 LPQVEHY----GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAV 496
               E        +ID+  + G ++E   + + M +E + + W  ++    +    + A+
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKM-MERDCVSWNAMIIGFAQNGYGNEAL 478

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           EL  E+LD      G  P + TM+  + +A G
Sbjct: 479 ELFREMLD-----SGEKPDHITMI-GVLSACG 504


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 318/574 (55%), Gaps = 24/574 (4%)

Query: 34   KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
            K +   I++  ++ + ++A  L++    C  +  A  VF   Q  DV  +N++I    Q+
Sbjct: 451  KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQH 510

Query: 94   SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                 A+++F +MQ + +  DN T+  +L  C       L + IH  I + G   D+ + 
Sbjct: 511  GSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLG 570

Query: 154  NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
            N+LI+ Y +CG   +  A+ +F S+  RD++SW +MI G    GE  +A  LF +M    
Sbjct: 571  NALINMYIRCG--SLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEG 628

Query: 210  --PERDAVSW-------NTILDGYAK--AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
              P +   S        +  LD   K  A  +N  +EL   +        + ++  YSK 
Sbjct: 629  FRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVG-------NALISAYSKS 681

Query: 259  GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
            G M  A+ +FD+MP++ +V W  II+GYA+ G+ + A     QM+E  + P+  + +S+L
Sbjct: 682  GSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLL 741

Query: 319  AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
             AC+    L  G +VHA I K + + +  V  AL+ MYAKCGS   A  VF+ + +K++V
Sbjct: 742  NACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVV 801

Query: 379  SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            +WNAM+   A HG   KALG F+ M+ EG  PD  TF  +L AC HAG + +G Q F SM
Sbjct: 802  TWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSM 861

Query: 439  ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            E +YG+LP +EHYGC++ LLGR+ R +EA  L+  MP  P+A +W TLLGACR H  + L
Sbjct: 862  ESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIAL 921

Query: 499  AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            AE   +  ++L   +P  Y +LSN++AA G W+ VA +R  M+    +K  G S +EVDN
Sbjct: 922  AEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 981

Query: 559  EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             +HEF   D+ HP++ +IY  +  L  +++  G+
Sbjct: 982  IIHEFIAADRSHPETAEIYAELKRLSVEMEEAGY 1015



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/471 (31%), Positives = 236/471 (50%), Gaps = 16/471 (3%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   K++ +QIIK   QRDP +   L+S    C  +  A +VF  I   DV  YNT++  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q +   +   +F  M  +G+  D  TY  LL A    +     + IH L  + G   D
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V  +L+    +CG   V  AK+ F    +RD+V +N++IA L + G   EA   +  M
Sbjct: 264 IRVGTALVTMCVRCG--DVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRM 321

Query: 210 PERDAVSWN-----TILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
              D V+ N     +IL+  +     +AG++ +   + E     ++   + ++  Y++ G
Sbjct: 322 -RSDGVALNRTTYLSILNACSTSKALEAGKL-IHSHISEDGHSSDVQIGNALISMYARCG 379

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D+  A+ LF  MP + L+ W  II+GYA +    EA RLY QM+  G+KP   T + +L+
Sbjct: 380 DLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLS 439

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA S     G  +H  I +   K N ++ NAL++MY +CGSL  A +VF G   +D++S
Sbjct: 440 ACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+M+ G A HG  E A  LF  M++E   PD  TF  VL  C +   ++ G Q  +   
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQ-IHGRI 558

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
            + G+   V     +I++  R G L++A  +  S+    + + W  ++G C
Sbjct: 559 TESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMIGGC 608



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 252/523 (48%), Gaps = 43/523 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQN  + + L + K++ AQ+++  +  D +++  LI+    CR +  A +VF ++   DV
Sbjct: 34  LQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDV 93

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N+LI    Q     +AF++F +MQ  G   +  TY  +L AC         + IH+ 
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQ 153

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K GY  D  V NSL+  Y KCG   +  A+++F  +  RD+VS+N+M+    +   + 
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCG--DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVK 211

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMV 252
           E   LF +M       D V++  +LD +     ++    +     E+  + +I   + +V
Sbjct: 212 ECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALV 271

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
               + GD++ AK  F     + +V +  +I+  A+ G   EA   Y +M   G+  +  
Sbjct: 272 TMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRT 331

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T +SIL AC+ S  L  G  +H+ I++     +  + NAL+ MYA+CG L  A  +F  M
Sbjct: 332 TYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--------- 423
            K+DL+SWNA++ G A      +A+ L+ +M+ EG  P + TF+ +L AC          
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 424 --HAGFIDKGVQY-------FYSMERDYGILPQVEH------------YGCMIDLLGRSG 462
             H   +  G++          +M R  G L + ++            +  MI    + G
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 463 RLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEV 502
             + A +L Q M    +EP+ I + ++L  C+   A+EL +++
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 117/423 (27%), Positives = 206/423 (48%), Gaps = 15/423 (3%)

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           Q +   T+  TY  LL+ C  K      + IHA + +     DIF+ N LI+ Y KC   
Sbjct: 19  QPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKC--R 76

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
            V  A ++F  M  RD++SWNS+I+   + G   +A +LF+EM       + +++ +IL 
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT 136

Query: 223 GYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                 E+    ++  +I      R+    ++++  Y K GD+  A+ +F  +  + +V 
Sbjct: 137 ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           +  ++  YA+K   KE   L+ QM   G+ PD  T I++L A     +L  G ++H    
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV 256

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           +     +  V  ALV M  +CG +D+A   F G   +D+V +NA++  LA HG   +A  
Sbjct: 257 EEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFE 316

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
            + RM+ +G   ++ T++ +L AC+ +  ++ G +  +S   + G    V+    +I + 
Sbjct: 317 QYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMY 375

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
            R G L +A  L  +MP + + I W  ++ G  R+ +  E     L   ++ +G  PG  
Sbjct: 376 ARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMR--LYKQMQSEGVKPGRV 432

Query: 518 TML 520
           T L
Sbjct: 433 TFL 435



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 156/361 (43%), Gaps = 43/361 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++ K++ A I+    + D  +   LIS+ +    M  A +VF+ +   D+  +N +I  
Sbjct: 649 LDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAG 708

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN L   A      MQE+ V  + F++  LL AC+  +     + +HA I K    GD
Sbjct: 709 YAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGD 768

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +LI  Y+KCG  G   A+++F ++ E+++V+WN+MI    + G  S+A   F+ M
Sbjct: 769 VRVGAALISMYAKCGSQGE--AQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCM 826

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
            +     D  ++ +IL     AG +   +++F  +                         
Sbjct: 827 EKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESE---------------------- 864

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
             +  +P  T+  +  ++         +EA  L +QM      PD     ++L AC   G
Sbjct: 865 --YGVLP--TIEHYGCLVGLLGRARRFQEAETLINQMP---FPPDAAVWETLLGACRIHG 917

Query: 326 LLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVF-----NGMTKKDLVS 379
            + L    HA+ N  +    N  V   L ++YA  G  D+   +       G+ K+   S
Sbjct: 918 NIALAE--HAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 975

Query: 380 W 380
           W
Sbjct: 976 W 976


>gi|359495784|ref|XP_003635090.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 616

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/611 (35%), Positives = 334/611 (54%), Gaps = 43/611 (7%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLAL--CRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           K L AQII   L  +     KLIS  A+     +  A ++F+ I  P+  +YN+LIR   
Sbjct: 5   KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
            +     A  +F  M   G+  + FT PF+LKAC  K+ +    ++H L  K G    +F
Sbjct: 65  NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           V N+LI  Y  CG++    A+KLF  + ++ +VSWNSMI G    G   EA  LF +M E
Sbjct: 125 VQNALIAVYVVCGLI--HCARKLFDDITDKTLVSWNSMIGGYAHMGNWKEAFLLFRKMRE 182

Query: 212 ---------------------------------------RDAVSWNTILDGYAKAGEMNL 232
                                                   D +  N ++D YAK G ++ 
Sbjct: 183 WGMEPDGFTFVNLLSVCSQSRDLDLGRYVHFCIEITGVKIDIIVRNALVDMYAKCGNLHS 242

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A  +F++   +N+VSW++M+  Y++ G +E+A+ +FD+MP K +V W  +IS Y  +G  
Sbjct: 243 AQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNSMISCYLREGQY 302

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           +EA  L+++M  + + PD+ TL+SILAAC++ G L +G K+H  I   +      + N+L
Sbjct: 303 REALDLFNKMRNSRVVPDEATLVSILAACSQLGDLVMGKKIHNYILSNKGAYGVTLYNSL 362

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +DMYAKCG +  A+ +F  M  K+LVSWN ++  LA+HG G +A+ LF  M+ +G  PD+
Sbjct: 363 IDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDE 422

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            T  G+L AC+H+G +D G+ YF  M   Y +  ++EHY CM+DLLGR G L EA+ L+ 
Sbjct: 423 ITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIG 482

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
            MP++P+ ++WG LLGACR H  VE+ +++L  L+ L+    G Y ++SNI+     W  
Sbjct: 483 RMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLELEPHSGGLYVLISNIYWEAQRWED 542

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V  +R  M     +K    SS+E+D  ++EF V D+ H  S  IY M++ L   L+  G+
Sbjct: 543 VKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDKRHKISSSIYAMLDQLTDHLRSAGY 602

Query: 593 AAKLSAEIGEG 603
              +S+   E 
Sbjct: 603 LCNISSVFFEA 613


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/410 (44%), Positives = 265/410 (64%), Gaps = 12/410 (2%)

Query: 163 CGVVGVSLAKK---LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE--RDAVSW 217
           CG +G   +K    LF  M  R  V+W  MI G  + G+   ARR FD++P   R+ V+W
Sbjct: 39  CGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTW 98

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             ++DGYA+  EM  A E+FE +P RN  +WS+M+ GY K G+++ A+ +FDR+P + LV
Sbjct: 99  TVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLV 158

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  +ISGYA+ G ++EA   + +M+  G +PD+ T+ S+L+AC++ GLL  G K+H  +
Sbjct: 159 NWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMM 218

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
           N    K N  V N LVDMYAKCG L NA  +F GM  ++   WN+M+ G A+HGQ ++AL
Sbjct: 219 NHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEAL 278

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
             F RM+D   GPD+ TF+ VL AC H GF++ G++ F  ME+ YG+   ++HYGC+IDL
Sbjct: 279 EFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDL 337

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGS 512
           LGR+GR+KEA  L++ MPV+PN ++WG LLGACR H  +E+A+ V++ ++++      G 
Sbjct: 338 LGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGC 397

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           D  +Y +LSNI+AA+  W K   +R++M     QK SG SS+   N  HE
Sbjct: 398 DS-HYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE 446



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           QR+ +    +IS       +  A  +F+ I   ++  +N+LI    QN  + +A   F  
Sbjct: 123 QRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGK 182

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           MQ +G   D  T   +L AC+        + IH ++   G   + FV N L+D Y+KCG 
Sbjct: 183 MQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCG- 241

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
             ++ A+ +F  M  R+   WNSMI+G    G+  EA   F  M +     D +++ ++L
Sbjct: 242 -DLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVL 300

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAK 274
              A  G +N   E+F ++    + +    +  ++    + G ++ A  L  RMP K
Sbjct: 301 SACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVK 357


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 341/599 (56%), Gaps = 23/599 (3%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           +++ L ++ L  L +C +    +Q+  Q+I   + +  ++  + I      +    A  +
Sbjct: 26  AQQTLTDKLLSLLKQCTSTKSLQQIHTQMIINAIHKPNFLLHRFID----LKDFNNASLL 81

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRV----FLDMQEKGVFTDNFTYPFLLKACNG 127
           F+ I  P+ + +N +IR     +   Q F +    +  M++ G+  +NFTYPF+  AC  
Sbjct: 82  FSQIPYPNEYAFNIMIRGL---TTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACAN 138

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
               +  Q  H+ + K G   D  V +SLI  YS+CG +G   A+++F  + E+D+VSWN
Sbjct: 139 LLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGC--ARRVFDEISEKDLVSWN 196

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLA--FELF--EK 239
           SMI+G  + G   +A  LF EM     E D ++  +IL      G++ L    E F  E 
Sbjct: 197 SMISGYSRMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVEN 256

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
               N    S ++  Y K GD+  A+ +FDRM  K +V W  +I+GYA+ G++ EA  L+
Sbjct: 257 EMDLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILF 316

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M E+G+ PD  TL+ +L+ACA  G L  G  +    ++   + +  V  AL+DMYAKC
Sbjct: 317 SGMRESGVNPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKC 376

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKYTFVG 417
           GSLD+A+ VF  M +K+ VSWNAM+  LA HG+ +++L LF RM  EG    P+  +F+G
Sbjct: 377 GSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIG 436

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           VL AC HAG +D+G Q F  M   +G++P++EH+ CM+DLL R+G + EA   ++ MP +
Sbjct: 437 VLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK 496

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
           P+ ++ G LLGAC+K   V+++E V+  L+ ++  + GNY + S IFA    W+  A +R
Sbjct: 497 PDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMR 556

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           + M++    K  G S +E++N+VHEF   D LH  S+ + Q+IN L +++K  G+  K+
Sbjct: 557 VLMRQRGVTKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGYGPKV 615


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/584 (35%), Positives = 321/584 (54%), Gaps = 45/584 (7%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA--LCRQMGLAIKVFNDIQD 77
           KL +     +L    QL   +++    +D Y++  L+   A         A+KVF+ I +
Sbjct: 36  KLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPN 95

Query: 78  PDVHLYNTLIRACVQNSLNAQAF----RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           P+V ++N +I+ C++N+   +A     R+ +D +      + FTYP L KAC+       
Sbjct: 96  PNVFIWNIVIKGCLENNKLFKAIYFYGRMVIDAR-----PNKFTYPTLFKACSVAQAVQE 150

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + IH  + K G   D+ + ++ I  Y+  G                             
Sbjct: 151 GRQIHGHVVKHGIGSDVHIKSAGIHMYASFG----------------------------- 181

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                L +AR++F    E D V WNT++DGY K G +  A  LF ++P +NI SW+ M+ 
Sbjct: 182 ----RLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMIN 236

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           G +K G++  A+ LFD M  +  + W+ ++ GY   G  KEA  ++ QM+    +P    
Sbjct: 237 GLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFI 296

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S+LAAC+  G +  G  VHA + +   K +  +  AL+DMYAKCG LD    VF  M 
Sbjct: 297 LSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMK 356

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           ++++ +WNAM+ GLA+HG+ E AL LFS++++    P+  T VGVL AC HAGF+DKG++
Sbjct: 357 EREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLR 416

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F +M   YG+ P++EHYGCM+DLLGRSG   EA  L+ SMP++PNA +WG LLGACR H
Sbjct: 417 IFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIH 476

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
              +LAE V   L+ L+  + G Y +LSNI+A  G ++ V+ +R  MK    +   G S 
Sbjct: 477 GNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSI 536

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           V+++  VHEF + D  HP+ ++IY+ +  + + L+  GH+   S
Sbjct: 537 VDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTS 580


>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
 gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Cucumis sativus]
          Length = 583

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/571 (36%), Positives = 320/571 (56%), Gaps = 12/571 (2%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L ++  CKNL   +Q+ AQ++   L  D ++  K++   A   + G      + ++  + 
Sbjct: 9   LDSIKDCKNLRIFRQIHAQLVTSGLVYDDFVTSKVMEFFANFVEYG--DYACDYLEQGNT 66

Query: 81  HL----YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
            L    +N+LI   V       A  V+  M   G   D FT+P LLKAC+  +     + 
Sbjct: 67  RLGSFPFNSLINGYVGGEFPQMAVSVYRRMVRDGFVPDMFTFPVLLKACSNFSGSREGRQ 126

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H ++ K G   D +V NSLI  Y  CG    S A K+F  M  RD+VSWNS+I+G +K 
Sbjct: 127 VHGVVVKLGLLADHYVQNSLIRCYGACG--DFSCAGKVFDEMLVRDVVSWNSLISGFMKA 184

Query: 197 GELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR---NIVSWSTMV 252
           G   EA  +F  M  E    +  ++L   A+ G++     +   I  R   N+V  + M+
Sbjct: 185 GHFDEAISVFFRMDVEPSMTTLVSVLAACARNGDLCTGKGIHGVIERRFKVNLVLGNAML 244

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K+G    AK +FD +P + +V WTI+I+G  +    K++  L+  M   G+ PD  
Sbjct: 245 DMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPDAI 304

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            L S+L+ACA  G L  G  VH  IN+   K + ++  A+VDMYAKCG ++ A+ +F  M
Sbjct: 305 ILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIFYSM 364

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
           ++++  +WNA+L GLAMHG   +AL LF  M   G  P++ TF+ +L AC H G +D+G 
Sbjct: 365 SQRNTFTWNALLCGLAMHGLVHEALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGR 424

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +YF +M + Y +LP++EHYGCMIDL  R+G L+EA+ L ++MP++P+ +IWG LL AC  
Sbjct: 425 KYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVELARTMPMKPDVLIWGLLLNACTT 484

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
              +EL+  + D ++ L   D G + +LSNI A    W+ V  +R  MK    +K  G+S
Sbjct: 485 VGNIELSHRIQDYILELDHDDSGVFVLLSNISAINQRWSNVTRLRRLMKDRGVRKAPGSS 544

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            +EVD + HEF V D  H ++E+IY+++N +
Sbjct: 545 VIEVDGKAHEFVVGDISHLQTEEIYKVLNLI 575


>gi|147798551|emb|CAN72187.1| hypothetical protein VITISV_012899 [Vitis vinifera]
          Length = 690

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/613 (34%), Positives = 323/613 (52%), Gaps = 67/613 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS---------------LALCRQMGLA 68
           L K K L+   Q+ +++I      +P +  ++I +               L + R  G  
Sbjct: 77  LPKSKTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRK 136

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
            +     +  +  L+N +I++        +AF +F  M E GV  D F++  +LKAC+  
Sbjct: 137 HR-----KQDNPFLWNAIIKSFSHGEDPXEAFXIFNLMLENGVCVDKFSFSLVLKACSRL 191

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
                   IH L+       D+F+ N L+  Y +CG +G+  A++LF  M  RD VS+NS
Sbjct: 192 GLIKEGMQIHGLLGXMEIGSDVFLQNCLMCLYLRCGCLGI--ARQLFDRMMXRDSVSFNS 249

Query: 189 MIAGLVKGGELSEARRLFD----------------------------------EMPERDA 214
           MI G VK G +  AR LFD                                  EMP+RD 
Sbjct: 250 MIDGYVKHGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDL 309

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +SWN+++DG  K G+M  A  LF  +P R++VSW+ MV GY+K G++++A+ LFD MP +
Sbjct: 310 ISWNSMIDGCVKCGKMENAHHLFNXMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPER 369

Query: 275 TLVPWTIIISGYAEKGMAKEAARLY-DQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
            ++    +++GY + G   EA   + D +    L P + TL+  L+A A+ G    G+ +
Sbjct: 370 DVISCNAMMAGYVQNGXLMEALXFFHDMLSXKELFPXNATLLITLSAIAQLGHFDEGVAL 429

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  I    F  +  +  AL+DMYAKCGS+DNA+          +  WNA+J GLA+HG G
Sbjct: 430 HCYIEDNGFSLSEKLGXALIDMYAKCGSIDNAL----------IDHWNAIJXGLAIHGLG 479

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           E A  LF  M+     PB  TF+GVL AC HAG + +G+  F  M   + + P+++HYGC
Sbjct: 480 EVAFELFMEMEKLFVKPBDITFIGVLNACNHAGLVKEGLMXFXLMRXVHKVEPKLQHYGC 539

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D+LGR+G ++E  + V+ MP+EPN ++W TLL ACR H    + E V   LI +   +
Sbjct: 540 MVDILGRAGHVEEXKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYN 599

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
           P +Y +LSNI+A  G WN V  +R+ MK+   +K  G S +E++  VHEF V D+ HP+ 
Sbjct: 600 PSSYVLLSNIYAXFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNVHEFFVRDKSHPQR 659

Query: 574 EQIYQMINTLGKD 586
             I  +   LG D
Sbjct: 660 LPIVNISAELGTD 672


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 210/622 (33%), Positives = 322/622 (51%), Gaps = 79/622 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIKVFNDIQDPDVH 81
           L +CK     +Q+ A ++K     DP I   ++ S AL     +  A+ +FN I  P+  
Sbjct: 28  LQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESS 87

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            YN +IR          A  +F  M EK V  D FT+  +LKAC+        + +HALI
Sbjct: 88  AYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALI 147

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  + FV N+LI  Y+ CG +GV                                 
Sbjct: 148 LKSGFKSNEFVENTLIQMYANCGQIGV--------------------------------- 174

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH------------------- 242
           AR +FD MPER  V+WN++L GY K G  +   +LF KI                     
Sbjct: 175 ARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGR 234

Query: 243 --------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
                               RN    ++++  Y+K G ++ A+ LFD M  + +V W+ +
Sbjct: 235 LANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAM 294

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           ISGYA+    KEA  L+ +M++  + P++ T++S+L +CA  G    G  VH  I K + 
Sbjct: 295 ISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKM 354

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
           K    +   L+D YAKCG +D ++ VF  M+ K++ +W A++ GLA +G+G+ AL  FS 
Sbjct: 355 KLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSS 414

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M +    P+  TF+GVL AC+HA  +D+G   F SM RD+ I P++EHYGCM+D+LGR+G
Sbjct: 415 MLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAG 474

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
            L+EA + + +MP  PNA++W TLL +CR H  +E+AE+ L+ + RL+ +  G+Y +LSN
Sbjct: 475 FLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSN 534

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
            +A  G       VR  +K+   +K  G S +E+D  VHEF   D  H  S++I+  ++ 
Sbjct: 535 TYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDK 594

Query: 583 LGKDLKPVGHA-----AKLSAE 599
           + K +K +G+      A+L AE
Sbjct: 595 MMKQIKRLGYVPNTDDARLEAE 616



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/415 (25%), Positives = 193/415 (46%), Gaps = 20/415 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+   + K L + +Q+ A I+K   + + ++   LI   A C Q+G+A  VF+ + +  +
Sbjct: 128 LKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSI 187

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N+++    +N L  +  ++F  + E  +  D+ T   +L AC       + ++I   
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEY 247

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I   G   +  +  SLID Y+KCG   V  A+KLF  M +RD+V+W++MI+G  +     
Sbjct: 248 IVSKGLRRNNTLTTSLIDMYAKCG--QVDTARKLFDEMDKRDVVAWSAMISGYAQADRCK 305

Query: 201 EARRLFDEMPERDA----VSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMV 252
           EA  LF EM + +     V+  ++L   A  G       + F + +K     +   + ++
Sbjct: 306 EALNLFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLI 365

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G ++ +  +F  M  K +  WT +I G A  G  K A   +  M E  +KP+D 
Sbjct: 366 DFYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDV 425

Query: 313 TLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T I +L+AC+ + L+  G  +  S+ + +  +        +VD+  + G L+ A    + 
Sbjct: 426 TFIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDN 485

Query: 372 MT-KKDLVSWNAMLYGLAMHGQ---GEKALGLFSRMKDEGFG-----PDKYTFVG 417
           M    + V W  +L     H      EK+L   +R++    G      + Y  VG
Sbjct: 486 MPFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVG 540


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/595 (35%), Positives = 332/595 (55%), Gaps = 22/595 (3%)

Query: 10  WFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           +F K RLL     ++H+CK +   KQ+ A +I   L  D ++  K+  S    + +G   
Sbjct: 2   YFLKLRLL----NSIHRCKTIRSLKQIHAHLIASGLLHDEFVLSKV--SEFFGKHIGFVD 55

Query: 70  KVFNDIQDPDVHL----YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
             F+ +   D+H+    YNTLI A   +     AF V+  +   G   D +T+P +LKAC
Sbjct: 56  YAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKAC 115

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
                    + +H +  K G+  D++V NSL+  YS CG  G   A ++F  M  RD+VS
Sbjct: 116 TKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGG--AGRVFDEMLVRDVVS 173

Query: 186 WNSMIAGLVKGGELSEARRLF---DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           W  +I+G V+ G   EA  LF   D +P  +  ++ ++L    + G +++   +   +  
Sbjct: 174 WTGLISGYVRTGLFDEAINLFLKMDVVP--NVATFVSVLVACGRMGYLSMGKGVHGLVYK 231

Query: 243 R----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           R     +V  + +V  Y K   +  A+ LFD +P + +V WT IISG  +    K++  L
Sbjct: 232 RAFGIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLEL 291

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +  M+ +G++PD   L S+L+ACA  G L  G  V   I +   + + ++  ALVDMYAK
Sbjct: 292 FYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAK 351

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           CG ++ A+ +FNG+  +++ +WNA+L GLAMHG G +AL  F  M   G  P++ TF+ +
Sbjct: 352 CGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAI 411

Query: 419 LCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           L AC H+G + +G  YFY M  + +   P++EHYGCMIDLL R+G L EA + +++MP+ 
Sbjct: 412 LTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLP 471

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
           P+ +IWG LL AC+ +  VEL++E+L  L+ LK  D G Y +LSNI+A    W+ V  VR
Sbjct: 472 PDVLIWGALLSACKANGNVELSQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVR 531

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             MK    +K  G+S +EVD E HEF V D  H ++E I+ ++N L   +   GH
Sbjct: 532 RLMKDKGIRKFPGSSVIEVDGEAHEFLVGDTNHSRNEDIHILLNILANQVYLEGH 586


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 317/571 (55%), Gaps = 10/571 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +N  KQ+   +I   L  D ++   L+      RQ   +  +F+  Q P++ LYN+LI 
Sbjct: 25  TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V N L  +   +FL +++ G++   FT+P +LKAC   +   L   +H+L+ KCG+  
Sbjct: 85  GFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+    SL+  YS  G   ++ A KLF  + +R +V+W ++ +G    G   EA  LF +
Sbjct: 145 DVAAMTSLLSIYSGSG--RLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKK 202

Query: 209 MPER----DAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           M E     D+     +L      G+++    +   + E    +N    +T+V  Y+K G 
Sbjct: 203 MVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGK 262

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ME A+ +FD M  K +V W+ +I GYA     KE   L+ QM +  LKPD  +++  L++
Sbjct: 263 MEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSS 322

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA  G L LG    + I+++ F  N  + NAL+DMYAKCG++     VF  M +KD+V  
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA + GLA +G  + +  +F + +  G  PD  TF+G+LC C HAG I  G+++F ++  
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y +   VEHYGCM+DL GR+G L +A RL+  MP+ PNAI+WG LL  CR     +LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            VL  LI L+  + GNY  LSNI++  G W++ A VR  M K   +K  G S +E++ +V
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGKV 562

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           HEF   D+ HP S++IY  +  LG +++ +G
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593


>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 601

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/514 (39%), Positives = 306/514 (59%), Gaps = 7/514 (1%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMI 137
           D  L NT+I A          F ++    +   F   ++T+  +LK C+  +       I
Sbjct: 86  DEFLCNTIINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLILKGCSVSDAKRQGFQI 145

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H ++ K  +  D++V  SL+D Y K G VG   A+K+F  M  R +VSW ++I G  + G
Sbjct: 146 HGVVLKNWFCLDLYVGTSLVDMYVKFGDVG--FARKVFDEMSVRSLVSWTAVIVGYARCG 203

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
           ++ EAR+LFD M +RD  ++N ++DGY K G M+LA +LF+K+  +N++SW++MV GYS+
Sbjct: 204 DMVEARKLFDGMVDRDVAAFNVMIDGYVKMGRMDLARDLFDKMRVKNVISWTSMVHGYSE 263

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLIS 316
           DGD++ A+ LFD MP K ++ W  +I GY + G + +A +L+ +M     ++ ++ T++S
Sbjct: 264 DGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGRSHDALKLFCEMRGNVDVEMNEVTVVS 323

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L A A+   L LG  VH  + + +   + +VCNALVDMYAKCG +  A  VF  MT+KD
Sbjct: 324 VLPAVADLSALDLGGWVHGFVQRNQLDGSVHVCNALVDMYAKCGEIGKAKLVFEEMTEKD 383

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
             SWNA++ G  ++G  ++AL +F+ M  EGF P++ T   VL AC H G +++G + F 
Sbjct: 384 TGSWNALINGYGVNGCAKEALEVFAMMLREGFEPNQITMTSVLSACNHCGLVEEGRRCFE 443

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           +MER +GI+PQ+EHYGCMIDLLGR+GRL EA +L+Q+MP +PN II  + L AC     V
Sbjct: 444 AMER-FGIVPQIEHYGCMIDLLGRAGRLDEAEKLIQAMPYDPNEIILTSFLFACCYFEDV 502

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
             AE +L   ++++    G+Y ML N++A    W  V +V+  MKK  + K    S +EV
Sbjct: 503 SRAERILKVAVKMEKEGAGDYVMLRNLYATERRWADVEDVKEMMKKRGSNKEVAWSVIEV 562

Query: 557 DNEVHEFSVCDQLHPKS--EQIYQMINTLGKDLK 588
           D    EF      H  S  E I   +  L K +K
Sbjct: 563 DGRFREFVAGYYSHSHSHLEAIQSTLGQLWKHMK 596


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 317/572 (55%), Gaps = 37/572 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVH 81
           L  C++L   KQ+ A + K  L  DP IA KL+  S++++   +  A ++F    +PDV 
Sbjct: 12  LTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVF 71

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           ++NTLIR   ++     +   F++M+ +     D+F++ FLLKA            +H  
Sbjct: 72  MHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQ 131

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
               G    +FV  +L+  YS+CG V                                  
Sbjct: 132 AIVHGLDTHLFVGTTLVSMYSECGFVAF-------------------------------- 159

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            A+++F+EM E + V+WN ++    + G++  A  +F ++P RN+ SW+ M+ GY+K G+
Sbjct: 160 -AKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGE 218

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E+A+ LF  MP K  V W+ +I G+A  G   EA   + ++++ G++P++ +L   L+A
Sbjct: 219 LELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSA 278

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
           CA++G +  G  +H  I K  F    +V NAL+D Y+KCG++  A  VF  M  K+ +VS
Sbjct: 279 CADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVS 338

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W +M+ GLAMHG GE+A+ LF  M++ G  PD   F+ +L AC+HAG I+KG +YFY M+
Sbjct: 339 WTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMK 398

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             Y I P +EHYGCM+DL GR+G+L +A   +  MPV P AIIW TLLGAC  H  V+LA
Sbjct: 399 DIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLA 458

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E V + L  L  ++ G++ +LSNI+A  G W  VA VR  M   R  K  G S +EVD  
Sbjct: 459 ERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKI 518

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           ++ F   +  +  +E+ Y+ +  +   L+  G
Sbjct: 519 MYSFVAGEVQNSITEEAYEKLKEIMLKLRVEG 550


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/571 (35%), Positives = 315/571 (55%), Gaps = 10/571 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
             N  KQ+   +I   L  D ++   L+      RQ   +  +F+  Q P++ LYNTLI 
Sbjct: 25  TFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLIN 84

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V N L  +   +FL +++ G+    FT+P +LKAC   +   L   +H+L+ KCG+  
Sbjct: 85  GFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNH 144

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+    SL+  YS  G   ++ A K+F  + ER +V+W ++ +G    G+  EA  LF +
Sbjct: 145 DVAAMTSLLSIYSGSG--RLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKK 202

Query: 209 MPER----DAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           M E     D+     +L      G+++    +   + E    +N    +T+V  Y+K G 
Sbjct: 203 MVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGK 262

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ME A+ +FD M  K +V W+ +I GYA     KE    + QM +  LKPD  +++  L++
Sbjct: 263 MEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSS 322

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA  G L LG    + I+++ F  N  + NAL+DMYAKCG++     VF  M +KD+V  
Sbjct: 323 CASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIM 382

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA + GLA +G  + +  +F + +  G  PD  TF+G+LC C HAG I  G+++F ++  
Sbjct: 383 NAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISC 442

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y +   VEHYGCM+DL GR+G L +A RL+  MP+ PNAI+WG LL  CR     +LAE
Sbjct: 443 VYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAE 502

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            VL  LI L+  + GNY  LSNI++ +G W++ A VR  M +   +K  G S +E++  V
Sbjct: 503 TVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGTV 562

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           HEF   D+ HP S++IY  +  LG +++ +G
Sbjct: 563 HEFLADDKSHPLSDKIYAKLEDLGNEMRLMG 593


>gi|125573086|gb|EAZ14601.1| hypothetical protein OsJ_04525 [Oryza sativa Japonica Group]
          Length = 616

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/482 (40%), Positives = 293/482 (60%), Gaps = 5/482 (1%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NTL+R     S   ++   F  M+   V  D +T+P +LKAC       +  ++H    
Sbjct: 85  WNTLVRLHAAASPR-RSLLYFSRMRRAAVAPDAYTFPAVLKACGCAPGCRVGLVVHGEAV 143

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G   D+F  N+LI  Y  C +      +K+F   G RD+VSWNSM+AG V  GE+  A
Sbjct: 144 RTGLDADLFTRNALISFY--CRIGDCRSGRKVF-DHGVRDLVSWNSMVAGYVGCGEVDLA 200

Query: 203 RRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           + LFDEM +RDA SW T++DGY + AG ++ A ELF+++P R++V W++M+ GY++ G M
Sbjct: 201 QDLFDEMRQRDAFSWATMIDGYGEMAGGVDRARELFDQMPDRDLVCWNSMIDGYARHGRM 260

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A++LF+ MP + ++ W+I+I GY   G   EA   + +M   G+KPD    +  +AAC
Sbjct: 261 DEARVLFEEMPERNVISWSIVIDGYVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAAC 320

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A+ G L  G  +H+ + K +   +  V  AL+DMY KCG LD A  +F  M KK +V+WN
Sbjct: 321 AQLGALEQGRWLHSYLEKKKVLFDVVVQTALIDMYVKCGRLDLAKLIFESMPKKSVVTWN 380

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+ GL  HG G  A+ LF++M+ E    D  + + VL +CTHAG + +G+  FY ME+D
Sbjct: 381 VMIVGLGTHGYGLDAIKLFNQMETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKD 440

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P+VEHYG +IDLLGR+GR+ +A   +++MP+EP   +WG+LL +CR H  VELAE 
Sbjct: 441 LGLEPKVEHYGALIDLLGRAGRVDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAEL 500

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
            ++ L  L   D G Y +LSNI+A  G W+ V  +R  M     +K  G S +EVD ++H
Sbjct: 501 SVERLASLGADDSGVYVLLSNIYADEGMWDDVFRIRKLMSAEGMKKNIGRSVIEVDGQIH 560

Query: 562 EF 563
           EF
Sbjct: 561 EF 562



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 134/327 (40%), Gaps = 50/327 (15%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +++ ++LF Q+      RD      +I   A   +M  A  +F ++ + +V  ++ +I  
Sbjct: 229 VDRARELFDQMP----DRDLVCWNSMIDGYARHGRMDEARVLFEEMPERNVISWSIVIDG 284

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+     +A   F  M   G+  D       + AC         + +H+ + K     D
Sbjct: 285 YVRFGEPNEALEFFQRMLRCGIKPDRVAAVGAVAACAQLGALEQGRWLHSYLEKKKVLFD 344

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +LID Y KCG   + LAK +F SM ++ +V+WN MI GL   G   +A +LF++M
Sbjct: 345 VVVQTALIDMYVKCG--RLDLAKLIFESMPKKSVVTWNVMIVGLGTHGYGLDAIKLFNQM 402

Query: 210 P----------------------------------ERD------AVSWNTILDGYAKAGE 229
                                              E+D         +  ++D   +AG 
Sbjct: 403 ETERAPMDDLSILAVLTSCTHAGLVSEGLGIFYRMEKDLGLEPKVEHYGALIDLLGRAGR 462

Query: 230 MNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVPWTIIISG 285
           ++ A    E +P       W +++        +E+A+L  +R+    A     + ++ + 
Sbjct: 463 VDQARNTIETMPMEPTPELWGSLLASCRSHRCVELAELSVERLASLGADDSGVYVLLSNI 522

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA++GM  +  R+   M   G+K + G
Sbjct: 523 YADEGMWDDVFRIRKLMSAEGMKKNIG 549


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 226/672 (33%), Positives = 347/672 (51%), Gaps = 101/672 (15%)

Query: 23  NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDV 80
           +LH C NL Q  ++ +Q+I      D + A +L+        +GL  ++++F+ I++ + 
Sbjct: 47  HLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNG 106

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            ++NT++RA +Q++   +A  ++  M +  V  DN+TYP +++AC  +      + IH  
Sbjct: 107 FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDH 166

Query: 141 IYKCGYFGDIFVP-------------------------------NSLIDSYSKCGVV--- 166
           + K G+  D++V                                NS++  Y K G V   
Sbjct: 167 VLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEA 226

Query: 167 --------------------------GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
                                      V  A KLF  M E+D+VSW+++I+G  + G   
Sbjct: 227 KLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYE 286

Query: 201 EARRLFDEM-------PERDAVS--------------------------------WNTIL 221
           EA  +F EM        E   VS                                 N ++
Sbjct: 287 EALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALI 346

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
             Y+ +GE+  A +LF    + + +SW++M+ G  K G +E A+ LFD MP K +V W+ 
Sbjct: 347 HMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSA 406

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +ISGYA+     E   L+ +M+   ++PD+  L+S+++AC     L  G  VHA I K  
Sbjct: 407 VISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNG 466

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            K N  +   L+DMY KCG ++NA+ VFNGM +K + SWNA++ GLA++G  E++L +FS
Sbjct: 467 LKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFS 526

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            MK+ G  P++ TF+GVL AC H G +D+G  +F SM   +GI P V+HYGCM+DLLGR+
Sbjct: 527 EMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRA 586

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G L EA +L++SMP+ P+   WG LLGAC+KH   E+ E V   LI L+    G + +LS
Sbjct: 587 GLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLS 646

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NIFA+ GDW  V  VR  MK+    K  G S +E +  VHEF   D+ HP   ++  M+N
Sbjct: 647 NIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLN 706

Query: 582 TLGKDLKPVGHA 593
            + K LK  G+A
Sbjct: 707 EMAKRLKMEGYA 718


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/582 (35%), Positives = 332/582 (57%), Gaps = 50/582 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L  CK+++Q KQ+ A I  + LQ+D     KL++  ++   +G    A ++FN I DP +
Sbjct: 15  LKSCKSMSQLKQIQAHIFCVGLQQDRDTLNKLMA-FSMDSSLGDFNYANRIFNYIHDPSL 73

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            +YN +I+A V++     A  +F  ++E GV+ DN+TYP++LK           + +HA 
Sbjct: 74  FIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGCIGEVREGEKVHAF 133

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVV-GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           + K G   D +V NS +D Y++ G+V G +   ++F  M +RD VSWN MI+G V+    
Sbjct: 134 VVKTGLEFDPYVCNSFMDMYAELGLVEGFT---QVFEEMPDRDAVSWNIMISGYVRCKRF 190

Query: 200 SEA----RRLFDEMPER-----------------------------------DAVSWNTI 220
            EA    RR++ E  E+                                     +  N +
Sbjct: 191 EEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNAL 250

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           LD Y K G +++A E+F+ +  +N+  W++MV GY   G ++ A+ LF+R P++ +V WT
Sbjct: 251 LDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWT 310

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +I+GY +    +E   L+ +M+  G+KPD   ++++L  CA+SG L  G  +H  I++ 
Sbjct: 311 AMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDEN 370

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
           R K +  V  AL++MYAKCG ++ +  +FNG+ +KD  SW +++ GLAM+G+  +AL LF
Sbjct: 371 RIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMNGKPSEALELF 430

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             M+  G  PD  TFV VL AC+HAG +++G + F+SM   Y I P +EHYGC IDLLGR
Sbjct: 431 KAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGR 490

Query: 461 SGRLKEALRLVQSMPVEPNAII---WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           +G L+EA  LV+ +P + N II   +G LL ACR +  +++ E +   L ++K SD   +
Sbjct: 491 AGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSSLH 550

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           T+L++I+A+   W  V  VR +MK    +K  G S++EVD +
Sbjct: 551 TLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYSAIEVDGK 592


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/612 (34%), Positives = 326/612 (53%), Gaps = 73/612 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ   + ++L Q +++ A I+K  +Q + Y+   L+S  A C  +  A +VF+ I+D ++
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I A V  + N +AF+ +  M+  G   D  T+  LL A        L Q +H  
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHME 173

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + G   +  V  SL+  Y+KCG                                 ++S
Sbjct: 174 IVEAGLELEPRVGTSLVGMYAKCG---------------------------------DIS 200

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE---------------------- 238
           +AR +FD +PE++ V+W  ++ GYA+ G++++A EL E                      
Sbjct: 201 KARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT 260

Query: 239 --------KIPHRNIVS-------W--STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                   K  HR I+        W  ++++  Y K G +E A+ LF  +P + +V WT 
Sbjct: 261 TPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTA 320

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +++GYA+ G   EA  L+ +M++ G+KPD  T  S+L +C+    L  G ++H  +    
Sbjct: 321 MVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAG 380

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL-AMHGQGEKALGLF 400
           +  +  + +ALV MYAKCGS+D+A  VFN M+++++V+W A++ G  A HG+  +AL  F
Sbjct: 381 YNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYF 440

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
            +MK +G  PDK TF  VL ACTH G +++G ++F SM  DYGI P VEHY C +DLLGR
Sbjct: 441 DQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGR 500

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +G L+EA  ++ SMP  P   +WG LL ACR H+ VE  E   + +++L   D G Y  L
Sbjct: 501 AGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVAL 560

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           S+I+AA G +     VR  M+K    K  G S +EVD +VH F V D+ HP+SEQIY  +
Sbjct: 561 SSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESEQIYVEL 620

Query: 581 NTLGKDLKPVGH 592
             L + +K +G+
Sbjct: 621 GKLTEQIKEMGY 632



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 130/446 (29%), Positives = 225/446 (50%), Gaps = 25/446 (5%)

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
           + N++  Q  RV+ D+           +  LL+ C         + +HA I K G   + 
Sbjct: 34  IMNTMILQGTRVYSDV-----------FRGLLQECARLRSLEQGREVHAAILKSGIQPNR 82

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           ++ N+L+  Y+KCG   ++ A+++F S+ +R+IVSW +MI   V G +  EA + ++ M 
Sbjct: 83  YLENTLLSMYAKCG--SLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMK 140

Query: 211 ----ERDAVSWNTILDGYAKAGEMNLA----FELFEKIPHRNIVSWSTMVWGYSKDGDME 262
               + D V++ ++L+ +     + L      E+ E          +++V  Y+K GD+ 
Sbjct: 141 LAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDIS 200

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+++FDR+P K +V WT++I+GYA++G    A  L + M++A + P+  T  SIL  C 
Sbjct: 201 KARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT 260

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
               L  G KVH  I +  +     V N+L+ MY KCG L+ A  +F+ +  +D+V+W A
Sbjct: 261 TPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTA 320

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A  G  ++A+ LF RM+ +G  PDK TF  VL +C+   F+ +G +  +      
Sbjct: 321 MVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEG-KRIHQQLVHA 379

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHNAVELAEE 501
           G    V     ++ +  + G + +A  +   M  E N + W  ++ G C +H     A E
Sbjct: 380 GYNLDVYLQSALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHGRCREALE 438

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAAT 527
             D  ++ +G  P   T  S + A T
Sbjct: 439 YFD-QMKKQGIKPDKVTFTSVLSACT 463



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 109/225 (48%), Gaps = 4/225 (1%)

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           +S   + G  KEA  + + M   G +        +L  CA    L  G +VHA+I K   
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
           + N  + N L+ MYAKCGSL +A  VF+ +  +++VSW AM+       +  +A   +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRS 461
           MK  G  PDK TFV +L A T+   +  G + +   +E    + P+V     ++ +  + 
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKC 196

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           G + +A  +   +P E N + W  L+    +   V++A E+L+ +
Sbjct: 197 GDISKARVIFDRLP-EKNVVTWTLLIAGYAQQGQVDVALELLETM 240


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/575 (35%), Positives = 333/575 (57%), Gaps = 14/575 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           KNL   + +   + K  L  D ++   L+     CR++  A  +F+ +Q+ D+  +  +I
Sbjct: 44  KNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMI 103

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               +     ++  +F  M+E+GV  D      ++ AC      H  ++I   I +  + 
Sbjct: 104 GGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQ 163

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+ +  ++ID Y+KCG V    A+++F  M E++++SW++MIA     G+  +A  LF 
Sbjct: 164 LDVILGTAMIDMYAKCGCV--ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFR 221

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAF-ELFEKIPHR-----NIVSWSTMVWGYSK 257
            M       D ++  ++L  YA +   NL    L   I ++     +    + +V  Y K
Sbjct: 222 MMLSSGMLPDKITLASLL--YACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGK 279

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
             ++E A+ LFD+MP + LV WT++I GYAE G A E+  L+D+M E G+ PD   ++++
Sbjct: 280 CREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTV 339

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           + ACA+ G +     +   I + +F+ +  +  A++DM+AKCG +++A  +F+ M +K++
Sbjct: 340 VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNV 399

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           +SW+AM+     HGQG KAL LF  M   G  P+K T V +L AC+HAG +++G+++F  
Sbjct: 400 ISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSL 459

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M  DY +   V+HY C++DLLGR+GRL EAL+L++SM VE +  +WG  LGACR H  V 
Sbjct: 460 MWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVV 519

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           LAE+    L+ L+  +PG+Y +LSNI+A  G W  VA  R  M + R +K  G + +EVD
Sbjct: 520 LAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVD 579

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           N+ H+FSV D  HP+S++IY+M+ +LG  L+ VG+
Sbjct: 580 NKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGY 614



 Score =  218 bits (555), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 138/436 (31%), Positives = 230/436 (52%), Gaps = 13/436 (2%)

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
           F  F ++   G   DN+T PF+++AC       + ++IH ++YK G   D FV  +L+D 
Sbjct: 15  FGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDM 74

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAV 215
           Y KC    +  A+ LF  M ERD+V+W  MI G  + G+ +E+  LF++M E     D V
Sbjct: 75  YVKCR--EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKV 132

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           +  T++   AK G M+ A  + + I  +    +++  + M+  Y+K G +E A+ +FDRM
Sbjct: 133 AMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM 192

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             K ++ W+ +I+ Y   G  ++A  L+  M  +G+ PD  TL S+L AC++   L +G 
Sbjct: 193 EEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGR 252

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
            +H  + K+    +  VC ALVDMY KC  +++A  +F+ M ++DLV+W  M+ G A  G
Sbjct: 253 LIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECG 312

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
              ++L LF +M++EG  PDK   V V+ AC   G + K       ++R    L  +   
Sbjct: 313 NANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT 372

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             MID+  + G ++ A  +   M  E N I W  ++ A   H     A ++   ++R  G
Sbjct: 373 A-MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFPMMLR-SG 429

Query: 512 SDPGNYTMLSNIFAAT 527
             P   T++S ++A +
Sbjct: 430 ILPNKITLVSLLYACS 445



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 122/246 (49%), Gaps = 3/246 (1%)

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           ++ G+A+ G        + ++   G +PD+ TL  ++ AC +   L +G  +H  + K+ 
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
              +  VC ALVDMY KC  +++A  +F+ M ++DLV+W  M+ G A  G+  ++L LF 
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +M++EG  PDK   V V+ AC   G + K       ++R    L  +     MID+  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA-MIDMYAKC 179

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G ++ A  +   M  E N I W  ++ A   H     A ++   ++   G  P   T+ S
Sbjct: 180 GCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKITLAS 237

Query: 522 NIFAAT 527
            ++A +
Sbjct: 238 LLYACS 243


>gi|224126363|ref|XP_002329535.1| predicted protein [Populus trichocarpa]
 gi|222870244|gb|EEF07375.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/524 (38%), Positives = 301/524 (57%), Gaps = 5/524 (0%)

Query: 21  LQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-RQMGLAIKVFNDIQDP 78
           LQ L + C N+ Q  Q+  Q+  L L + P+ A + I  L  C   +   + ++N I++P
Sbjct: 61  LQKLEQSCTNIKQFNQIHTQLTVLGLFQHPFAASRYIKKLCACLNSVSHCVSLYNHIEEP 120

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           D  + NT++R+ V  +    A R + + M  K V  +++T+P + K C         Q +
Sbjct: 121 DAFMCNTIMRSFVNVNDPFGALRFYYEKMIAKWVLPNHYTFPLVAKVCADIGSLREGQKV 180

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           HAL+ K G+  D+FV NS I  YS CG    S A+ +F +    D+VSWNSMI G VK G
Sbjct: 181 HALVVKFGFELDLFVRNSFIRFYSVCG--RTSDARMVFDNGFVLDLVSWNSMIDGYVKNG 238

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
           EL  AR +FDEM ERD  +WN+++ GY   G+M  A  LF+K+P R++VSW+ M+ G+++
Sbjct: 239 ELGLAREIFDEMYERDIFTWNSMISGYVGVGDMEAARGLFDKMPSRDVVSWNCMIDGFAR 298

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
             D+ MA   FD MP + +V W ++++ Y       +  R +D M      PD+ +L+S+
Sbjct: 299 IKDVSMAAKFFDEMPLRNVVSWNVMLALYLRCKKYSDCLRFFDMMVGGDFVPDEASLVSV 358

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACAE  +L  G  VH+ +     K +  +  AL+ MYAKCG++D A  VF+ M +K +
Sbjct: 359 LTACAELKMLDQGKWVHSYMKDNGIKPDMLLSTALLTMYAKCGAMDLAREVFDKMPEKSV 418

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSWN+M+ G  +HG G+KAL +F  M+  G  P+  TF+ VL AC+H+G +  G  YF  
Sbjct: 419 VSWNSMIIGYGIHGHGDKALEMFREMEKGGPMPNDATFMSVLSACSHSGMVWNGWWYFDL 478

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M R Y I P+ EHYGC++DLLG++G  + +  L +    E    +WG LL ACR H   E
Sbjct: 479 MHRKYRIQPKPEHYGCLVDLLGQAGLKEPSEDLTRKTHTEVEPTLWGDLLSACRAHCISE 538

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
             E +   LI+L  +    Y +LSN + A G W+ V N+R+ +K
Sbjct: 539 PGEILAKQLIKLFPNHVVPYLLLSNTYVAEGRWDDVENLRMTLK 582


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/583 (37%), Positives = 319/583 (54%), Gaps = 27/583 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKL-----ISSLALCRQMGLAIKVFN----- 73
           L  CK++ + KQ+ A IIK +  R     P +     I+SL L + + LA  + N     
Sbjct: 33  LSSCKSVREIKQIHASIIKANTTRSTTTLPIISLCTKITSL-LQQDVHLADSIQNLWYAS 91

Query: 74  -----DIQDPDVHLYNTLIRA-CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
                  Q+P V+++N +I++    N+     F ++  M   G+  D +T P+LLKAC+ 
Sbjct: 92  SLANFCHQNP-VYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLKACSQ 150

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            + F     IHA   K G   ++FV N+L+  Y+  G +     +K+F      D++SW 
Sbjct: 151 SHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEA--VEKVFDQGPHWDLISWT 208

Query: 188 SMIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           ++I    K G  SEA   F  M    D ++   +L   ++ G+  L  ++   + H    
Sbjct: 209 TLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFD 268

Query: 247 SWSTMVWG------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
             S +  G      Y K G   +A+ LF  MP K LV W  +ISG A +G+ KEA  ++ 
Sbjct: 269 VHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFR 328

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           +M+  GLKPD  TL+ +L +CA  G L LG  VH+ I+K   K +  V NALVDMYAKCG
Sbjct: 329 RMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCG 388

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           S+D A  VF  M  KD+ S+ AM+ G AMHG+ ++AL +FS M   G  PD  T VGVL 
Sbjct: 389 SIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLS 448

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC+HAG +++G ++F  M R Y + PQ EHYGCM+DLLGR+G + EA      MP+ P+A
Sbjct: 449 ACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDA 508

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            +WG+LLGAC+ H  VEL E V+  LI ++    G Y ++SNI+++   W      R  M
Sbjct: 509 SVWGSLLGACKIHAKVELGETVIQKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAM 568

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           K+   +K  G SS+EVD  VHEF   ++ HPKS ++    N +
Sbjct: 569 KQNNIKKTPGCSSIEVDGMVHEFRKGEKSHPKSREMISNSNII 611


>gi|449437737|ref|XP_004136647.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 325/571 (56%), Gaps = 47/571 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  + + K LF    + D  ++      L+S      ++  A ++F+ +   +V  +NT
Sbjct: 109 KCGMIEEAKTLFD---RNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNT 165

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    +     QA  +F  M E+ V + N                    +I A      
Sbjct: 166 MIEGYARKGWIDQALDLFEKMPERNVVSWN-------------------TVITA------ 200

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                F+    +D            A++LF  M ERD++SW +M+AGL K G + +AR L
Sbjct: 201 -----FMQRRRVDE-----------AQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD+MP R+ VSWNT++ GYA+   ++ AF+LFE++P R + SW+TM+ G+ ++G +E A 
Sbjct: 245 FDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAV 304

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAES 324
             F +M  K +V WT +ISG+ + G ++EA +++ +M+ A  +KP++GT +S+L AC++ 
Sbjct: 305 DFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKL 364

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN--GMTKKDLVSWNA 382
             L  G ++H  I+K  ++   +V +AL++MY+KCG L+ A  +F+   +  +D+VSWN 
Sbjct: 365 AALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNG 424

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G KA+ LF  M+  GF PD  T++ +L AC+HAG +D+G++ F ++ RD 
Sbjct: 425 MIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDR 484

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I  + +H+ C++DL GR+GRL+EA   ++ + V+P+A +W  LL  C  H  ++L +  
Sbjct: 485 SIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLT 544

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + L+  +  + G Y +LSNI+A+TG W + A VR++MK    +K  G S +EV N VH 
Sbjct: 545 AEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHV 604

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           F V D  H + E IY +++ L   +K +GH 
Sbjct: 605 FVVGDNSHREFENIYLLLHDLHTKMKKIGHT 635



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 201/377 (53%), Gaps = 17/377 (4%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           D+    ++I  Y KCG++    AK LF  +   +++V+W ++++G V+   + EARRLFD
Sbjct: 96  DVVSWTAVITGYIKCGMI--EEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFD 153

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP ++ +SWNT+++GYA+ G ++ A +LFEK+P RN+VSW+T++  + +   ++ A+ L
Sbjct: 154 AMPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWNTVITAFMQRRRVDEAQEL 213

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F+RMP + ++ WT +++G ++ G   +A  L+D+M    +   +  +I      A++  L
Sbjct: 214 FNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMII----GYAQNMRL 269

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
               K+   + +          N ++  + + G L+ A+  F  M+ K++V+W A++ G 
Sbjct: 270 DEAFKLFEQMPERELSS----WNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGH 325

Query: 388 AMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-YGIL 445
              G+ E+AL +FS M+      P++ TFV VL AC+    + +G Q    + +  Y  +
Sbjct: 326 VQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEV 385

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPV-EPNAIIWGTLLGACRKHNAVELAEEVLD 504
             V     +I++  + G L+ A ++     +   + + W  ++ A   H     A  + D
Sbjct: 386 ADV--VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFD 443

Query: 505 CLIRLKGSDPGNYTMLS 521
            +  L G  P N T ++
Sbjct: 444 EMQAL-GFRPDNVTYIA 459



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 177/346 (51%), Gaps = 26/346 (7%)

Query: 154 NSLIDS-YSKCGVV-GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           NS++ S +S C VV  +S   + F +    ++   N +I  L K G++ EAR++F+EMP+
Sbjct: 37  NSILSSQFSTCQVVPKISSPVRDFSA--NSNVARSNWLITQLGKEGKIGEARQVFEEMPD 94

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           RD VSW  ++ GY K G +  A  LF++    +N+V+W+ +V GY +   +E A+ LFD 
Sbjct: 95  RDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDA 154

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP K ++ W  +I GYA KG   +A  L+++M E  +   +    +++ A  +   +   
Sbjct: 155 MPVKNVISWNTMIEGYARKGWIDQALDLFEKMPERNVVSWN----TVITAFMQRRRVDEA 210

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            ++   + +      T +   L    +K G +D+A  +F+ M  +++VSWN M+ G A +
Sbjct: 211 QELFNRMPERDVISWTTMVAGL----SKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQN 266

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
            + ++A  LF +M +           G +      G +++ V +FY M         V  
Sbjct: 267 MRLDEAFKLFEQMPERELSSWNTMITGFI----QNGKLERAVDFFYKMSN-----KNVVT 317

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRK 492
           +  +I    + GR +EAL++   M     V+PN   + ++LGAC K
Sbjct: 318 WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSK 363



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 342 FKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
           F  N+NV   N L+    K G +  A  VF  M  +D+VSW A++ G    G  E+A  L
Sbjct: 60  FSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTL 119

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F R        +  T+  ++        I++  + F +M      +  V  +  MI+   
Sbjct: 120 FDR---NDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMP-----VKNVISWNTMIEGYA 171

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R G + +AL L + MP E N + W T++ A  +   V+ A+E+ +   R+   D  ++T 
Sbjct: 172 RKGWIDQALDLFEKMP-ERNVVSWNTVITAFMQRRRVDEAQELFN---RMPERDVISWTT 227

Query: 520 LSNIFAATGDWNKVANVRLQMKK 542
           +    +  G   ++ + RL   K
Sbjct: 228 MVAGLSKNG---RIDDARLLFDK 247


>gi|224120036|ref|XP_002318226.1| predicted protein [Populus trichocarpa]
 gi|222858899|gb|EEE96446.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/485 (37%), Positives = 295/485 (60%), Gaps = 10/485 (2%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           ++ ++N +IR    N    +  R+F +M ++G+   NFTYP+++ +C    W+   + +H
Sbjct: 18  EIVIWNAMIRGYAFNGPFQECIRMFDEMPQRGLKPHNFTYPYVINSCCELEWYGRGKRVH 77

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGV---VGVS------LAKKLFMSMGERDIVSWNSM 189
             I K G+     V NSL + Y K      VG++       A+K+F  M  R +  WN M
Sbjct: 78  CEIVKSGFESSYAVANSLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQM 137

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
           I   V  G++  AR LFD MPERD VSWN+++ GYAK G++  A  LFEK+P +N++SW+
Sbjct: 138 IGKYVNIGDVKSARELFDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEKNVISWT 197

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           +M+  Y+   D+E A+  F+ MP + +V W  +IS YA+ G   E+  L+ QM+  G+ P
Sbjct: 198 SMIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTP 257

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  T +S+L+AC+  G L  G  +H  ++    +    V  AL +MYA+CG +D A +VF
Sbjct: 258 DGYTFVSVLSACSNLGDLEFGKYIHY-LSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVF 316

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
             + K+D+  WN ++  LA+HG+ E+A+ +F  M+  G  P+ +TF   L AC+H G ++
Sbjct: 317 IKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLVE 376

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +G   F SME+DY I+P++ HYGC+ID+L R+G+L+EA+ LV+ MP +P+  IWG LLG 
Sbjct: 377 EGHIIFNSMEKDYKIIPKITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGALLGG 436

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           CR    ++LAE+V++    ++ ++ G Y +LSNI A+ G W + A+ R +M + +  K +
Sbjct: 437 CRVTGDLKLAEKVVEKATEMETNESGVYVLLSNIHASAGQWIEAADARKKMDEKKISKKT 496

Query: 550 GASSV 554
           G+S V
Sbjct: 497 GSSVV 501



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 140/359 (38%), Gaps = 89/359 (24%)

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           NL F          IV W+ M+ GY+ +G  +    +FD MP +                
Sbjct: 5   NLIFSQMGHDSSAEIVIWNAMIRGYAFNGPFQECIRMFDEMPQR---------------- 48

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
                          GLKP + T   ++ +C E    G G +VH  I K  F+ +  V N
Sbjct: 49  ---------------GLKPHNFTYPYVINSCCELEWYGRGKRVHCEIVKSGFESSYAVAN 93

Query: 351 ALVDMYAK------------------------------------------CGSLDNAMSV 368
           +L +MY K                                           G + +A  +
Sbjct: 94  SLFNMYLKMPASFDVGLASNCKLDYARKIFDDMCVRPVELWNQMIGKYVNIGDVKSAREL 153

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ M ++D+VSWN+M+ G A  G+   A GLF +M ++    +  ++  ++ A      +
Sbjct: 154 FDIMPERDIVSWNSMILGYAKGGKVANARGLFEKMPEK----NVISWTSMIGAYADTDDL 209

Query: 429 DKGVQYFYSMERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRL---VQSMPVEPNAIIW 483
           +    +F +M       PQ  V  +  MI    + G+  E+L L   +QS  V P+   +
Sbjct: 210 ETARSFFETM-------PQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPDGYTF 262

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
            ++L AC     +E  + +      L  S+    T L+ ++A  GD +K   V +++ K
Sbjct: 263 VSVLSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGK 321



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/298 (23%), Positives = 132/298 (44%), Gaps = 31/298 (10%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I + A    +  A   F  +   +V  +N++I +  ++    ++  +F+ MQ +GV  D
Sbjct: 199 MIGAYADTDDLETARSFFETMPQRNVVSWNSMISSYAKHGKFVESLNLFVQMQSEGVTPD 258

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            +T+  +L AC+        + IH L        ++ V  +L + Y++CG V  + A  +
Sbjct: 259 GYTFVSVLSACSNLGDLEFGKYIHYLSGDLSQ-SEVMVGTALTEMYAQCGDVDKAFA--V 315

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAG-- 228
           F+ +G+RD+  WN +I  L   G   EA ++F  M +     +  ++ + L   +  G  
Sbjct: 316 FIKIGKRDVFCWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACSHGGLV 375

Query: 229 -EMNLAFELFEK----IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-WTII 282
            E ++ F   EK    IP   I  +  ++    ++G +E A LL + MP +  V  W  +
Sbjct: 376 EEGHIIFNSMEKDYKIIP--KITHYGCLIDMLCRNGQLEEAMLLVEDMPFQPDVAIWGAL 433

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           + G    G  K A ++ ++  E                  ESG+  L   +HAS  ++
Sbjct: 434 LGGCRVTGDLKLAEKVVEKATE--------------METNESGVYVLLSNIHASAGQW 477



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 35/219 (15%)

Query: 24  LHKCKNLNQTK-QLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           L  C NL   +   +   +  DL Q +  +   L    A C  +  A  VF  I   DV 
Sbjct: 266 LSACSNLGDLEFGKYIHYLSGDLSQSEVMVGTALTEMYAQCGDVDKAFAVFIKIGKRDVF 325

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            +N +I+A   +  + +A ++FL M++ G+  ++FT+   L AC+           H  +
Sbjct: 326 CWNVIIKALALHGRSEEAIKIFLLMRKTGLKPNDFTFTSALFACS-----------HGGL 374

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            + G+   IF  NS+   Y                      I  +  +I  L + G+L E
Sbjct: 375 VEEGHI--IF--NSMEKDYKII-----------------PKITHYGCLIDMLCRNGQLEE 413

Query: 202 ARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEK 239
           A  L ++MP + D   W  +L G    G++ LA ++ EK
Sbjct: 414 AMLLVEDMPFQPDVAIWGALLGGCRVTGDLKLAEKVVEK 452


>gi|449518887|ref|XP_004166467.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g35030, mitochondrial-like [Cucumis sativus]
          Length = 649

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 325/571 (56%), Gaps = 47/571 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  + + K LF    + D  ++      L+S      ++  A ++F+ +   +V  +NT
Sbjct: 109 KCGMIEEAKTLFD---RNDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMPVKNVISWNT 165

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    +     QA  +F  M E+ V + N                    +I A      
Sbjct: 166 MIEGYARKGWIDQALDLFEXMPERNVVSWN-------------------TVITA------ 200

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                F+    +D            A++LF  M ERD++SW +M+AGL K G + +AR L
Sbjct: 201 -----FMQRRRVDE-----------AQELFNRMPERDVISWTTMVAGLSKNGRIDDARLL 244

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD+MP R+ VSWNT++ GYA+   ++ AF+LFE++P R + SW+TM+ G+ ++G +E A 
Sbjct: 245 FDKMPVRNVVSWNTMIIGYAQNMRLDEAFKLFEQMPERELSSWNTMITGFIQNGKLERAV 304

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAES 324
             F +M  K +V WT +ISG+ + G ++EA +++ +M+ A  +KP++GT +S+L AC++ 
Sbjct: 305 DFFYKMSNKNVVTWTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKL 364

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN--GMTKKDLVSWNA 382
             L  G ++H  I+K  ++   +V +AL++MY+KCG L+ A  +F+   +  +D+VSWN 
Sbjct: 365 AALCEGQQIHQIISKTVYQEVADVVSALINMYSKCGELELARKIFDDGSIGHRDVVSWNG 424

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G KA+ LF  M+  GF PD  T++ +L AC+HAG +D+G++ F ++ RD 
Sbjct: 425 MIAAYAHHGHGHKAISLFDEMQALGFRPDNVTYIALLSACSHAGLVDEGLKLFENLVRDR 484

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I  + +H+ C++DL GR+GRL+EA   ++ + V+P+A +W  LL  C  H  ++L +  
Sbjct: 485 SIKLREDHFTCLVDLFGRAGRLQEAFDFIKGLEVKPSASVWAALLAGCNVHGHIDLGKLT 544

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + L+  +  + G Y +LSNI+A+TG W + A VR++MK    +K  G S +EV N VH 
Sbjct: 545 AEKLLETEPENAGTYLVLSNIYASTGKWREAAGVRMKMKDKGLKKQPGCSWIEVGNTVHV 604

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           F V D  H + E IY +++ L   +K +GH 
Sbjct: 605 FVVGDNSHREFENIYLLLHDLHTKMKKIGHT 635



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 200/377 (53%), Gaps = 17/377 (4%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           D+    ++I  Y KCG++    AK LF  +   +++V+W ++++G V+   + EARRLFD
Sbjct: 96  DVVSWTAVITGYIKCGMI--EEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFD 153

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP ++ +SWNT+++GYA+ G ++ A +LFE +P RN+VSW+T++  + +   ++ A+ L
Sbjct: 154 AMPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWNTVITAFMQRRRVDEAQEL 213

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F+RMP + ++ WT +++G ++ G   +A  L+D+M    +   +  +I      A++  L
Sbjct: 214 FNRMPERDVISWTTMVAGLSKNGRIDDARLLFDKMPVRNVVSWNTMII----GYAQNMRL 269

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
               K+   + +          N ++  + + G L+ A+  F  M+ K++V+W A++ G 
Sbjct: 270 DEAFKLFEQMPERELSS----WNTMITGFIQNGKLERAVDFFYKMSNKNVVTWTAVISGH 325

Query: 388 AMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-YGIL 445
              G+ E+AL +FS M+      P++ TFV VL AC+    + +G Q    + +  Y  +
Sbjct: 326 VQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSKLAALCEGQQIHQIISKTVYQEV 385

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPV-EPNAIIWGTLLGACRKHNAVELAEEVLD 504
             V     +I++  + G L+ A ++     +   + + W  ++ A   H     A  + D
Sbjct: 386 ADV--VSALINMYSKCGELELARKIFDDGSIGHRDVVSWNGMIAAYAHHGHGHKAISLFD 443

Query: 505 CLIRLKGSDPGNYTMLS 521
            +  L G  P N T ++
Sbjct: 444 EMQAL-GFRPDNVTYIA 459



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 176/346 (50%), Gaps = 26/346 (7%)

Query: 154 NSLIDS-YSKCGVV-GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           NS++ S +S C VV  +S   + F +    ++   N +I  L K G++ EAR++F+EMP+
Sbjct: 37  NSILSSQFSTCQVVPKISSPVRDFSA--NSNVARSNWLITQLGKEGKIGEARQVFEEMPD 94

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           RD VSW  ++ GY K G +  A  LF++    +N+V+W+ +V GY +   +E A+ LFD 
Sbjct: 95  RDVVSWTAVITGYIKCGMIEEAKTLFDRNDAIKNVVTWTALVSGYVRWNRIEEARRLFDA 154

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP K ++ W  +I GYA KG   +A  L++ M E  +   +    +++ A  +   +   
Sbjct: 155 MPVKNVISWNTMIEGYARKGWIDQALDLFEXMPERNVVSWN----TVITAFMQRRRVDEA 210

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            ++   + +      T +   L    +K G +D+A  +F+ M  +++VSWN M+ G A +
Sbjct: 211 QELFNRMPERDVISWTTMVAGL----SKNGRIDDARLLFDKMPVRNVVSWNTMIIGYAQN 266

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
            + ++A  LF +M +           G +      G +++ V +FY M         V  
Sbjct: 267 MRLDEAFKLFEQMPERELSSWNTMITGFI----QNGKLERAVDFFYKMSN-----KNVVT 317

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRK 492
           +  +I    + GR +EAL++   M     V+PN   + ++LGAC K
Sbjct: 318 WTAVISGHVQDGRSEEALKIFSEMQAANNVKPNEGTFVSVLGACSK 363



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 17/203 (8%)

Query: 342 FKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
           F  N+NV   N L+    K G +  A  VF  M  +D+VSW A++ G    G  E+A  L
Sbjct: 60  FSANSNVARSNWLITQLGKEGKIGEARQVFEEMPDRDVVSWTAVITGYIKCGMIEEAKTL 119

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F R        +  T+  ++        I++  + F +M      +  V  +  MI+   
Sbjct: 120 FDR---NDAIKNVVTWTALVSGYVRWNRIEEARRLFDAMP-----VKNVISWNTMIEGYA 171

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R G + +AL L + MP E N + W T++ A  +   V+ A+E+ +   R+   D  ++T 
Sbjct: 172 RKGWIDQALDLFEXMP-ERNVVSWNTVITAFMQRRRVDEAQELFN---RMPERDVISWTT 227

Query: 520 LSNIFAATGDWNKVANVRLQMKK 542
           +    +  G   ++ + RL   K
Sbjct: 228 MVAGLSKNG---RIDDARLLFDK 247


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/619 (32%), Positives = 328/619 (52%), Gaps = 49/619 (7%)

Query: 21  LQNLHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L  L  C N   L + +++   +  + ++ D  +A  LI+  + C ++ +A +VF+ + +
Sbjct: 161 LSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTE 220

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
            +V  +  +I+A  Q+    +AF ++  M + G+  +  T+  LL +CN     +  + I
Sbjct: 221 RNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 280

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H+ I + G   D+ V N+LI  Y KC    V  A+++F  M +RD++SW++MIAG  + G
Sbjct: 281 HSHISERGLETDMIVANALITMYCKCN--SVQEAREIFDRMSKRDVISWSAMIAGYAQSG 338

Query: 198 ----------------------------------------ELSEARRLFDEMP----ERD 213
                                                    L + R++  E+     E D
Sbjct: 339 YKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELD 398

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
                 I + YAK G +  A ++F K+ ++N+V+W++ +  Y K GD+  A+ +F  MP 
Sbjct: 399 RSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPT 458

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           + +V W ++I+GYA+ G   +   L   M+  G +PD  T+I+IL AC     L  G  V
Sbjct: 459 RNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLV 518

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           HA   K   + +T V  +L+ MY+KCG +  A +VF+ M+ +D V+WNAML G   HG G
Sbjct: 519 HAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDG 578

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
            +A+ LF RM  E   P++ T   V+ AC+ AG + +G + F  M+ D+ + P+ +HYGC
Sbjct: 579 LEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGC 638

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+DLLGR+GRL+EA   +QSMP EP+  +W  LLGAC+ HN V+LAE     ++ L+ S 
Sbjct: 639 MVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSY 698

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
              Y  LSNI+A  G W+    VR  M     +K  G SS+E+D  +H F   D  HP+ 
Sbjct: 699 ASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEI 758

Query: 574 EQIYQMINTLGKDLKPVGH 592
           + I+  + TL K++K  G+
Sbjct: 759 DAIHAELETLTKEMKEAGY 777



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 258/531 (48%), Gaps = 52/531 (9%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +++  K +     K +  Q+ +L ++ D Y+   LI+  +    +  A +VF  +   DV
Sbjct: 63  IEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDV 122

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++++I A   N+  A+AF  F  M +  +  +  T+  +LKACN  +     + IH +
Sbjct: 123 VTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTI 182

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +   G   D+ V  +LI  YSKCG   +S+A ++F  M ER++VSW ++I    +  +L+
Sbjct: 183 VKAMGMETDVAVATALITMYSKCG--EISVACEVFHKMTERNVVSWTAIIQANAQHRKLN 240

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMV 252
           EA  L+++M +     +AV++ ++L+       +N    +   I  R    +++  + ++
Sbjct: 241 EAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALI 300

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA-----KEAARLYDQMEEAGL 307
             Y K   ++ A+ +FDRM  + ++ W+ +I+GYA+ G        E  +L ++M   G+
Sbjct: 301 TMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGV 360

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS------ 361
            P+  T +SIL AC   G L  G ++HA ++K  F+ + ++  A+ +MYAKCGS      
Sbjct: 361 FPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQ 420

Query: 362 -------------------------LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
                                    L +A  VF+ M  +++VSWN M+ G A +G   K 
Sbjct: 421 VFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKV 480

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
             L S MK EGF PD+ T + +L AC     +++G +  ++     G+         +I 
Sbjct: 481 FELLSSMKAEGFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIG 539

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVL 503
           +  + G++ EA  +   M    + + W  +L    +H     AV+L + +L
Sbjct: 540 MYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAGYGQHGDGLEAVDLFKRML 589



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/498 (25%), Positives = 222/498 (44%), Gaps = 83/498 (16%)

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           R C    L  +A ++   ++++G+  ++ TY  +++ C     F   +M+H  + + G  
Sbjct: 30  RLCKAGRLR-EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVE 88

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            DI++ NSLI+ YSK     V+ A+++F  M  RD+V+W+SMIA        ++A   F+
Sbjct: 89  IDIYLGNSLINFYSK--FEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFE 146

Query: 208 EMP---------------------------------------ERDAVSWNTILDGYAKAG 228
            M                                        E D      ++  Y+K G
Sbjct: 147 RMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCG 206

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
           E+++A E+F K+  RN+VSW                               T II   A+
Sbjct: 207 EISVACEVFHKMTERNVVSW-------------------------------TAIIQANAQ 235

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
                EA  LY+QM +AG+ P+  T +S+L +C     L  G ++H+ I++   + +  V
Sbjct: 236 HRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIV 295

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK-----ALGLFSRM 403
            NAL+ MY KC S+  A  +F+ M+K+D++SW+AM+ G A  G  +K        L  RM
Sbjct: 296 ANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERM 355

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           + EG  P+K TF+ +L ACT  G +++G Q    + +  G          + ++  + G 
Sbjct: 356 RREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK-VGFELDRSLQTAIFNMYAKCGS 414

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           + EA ++   M    N + W + L    K   +  AE+V      +   +  ++ ++   
Sbjct: 415 IYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSAEKVFS---EMPTRNVVSWNLMIAG 470

Query: 524 FAATGDWNKVANVRLQMK 541
           +A  GD  KV  +   MK
Sbjct: 471 YAQNGDIVKVFELLSSMK 488


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 311/578 (53%), Gaps = 41/578 (7%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           Q L    ++   + + ++II  DL+ +  +  KL+ + A  + +  A KVF++I + +V 
Sbjct: 47  QVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           + N +IR+ V N    +  +VF  M    V  D++T+P +LKAC+      + + IH   
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G    +FV N L+  Y KCG                                  LSE
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGF---------------------------------LSE 193

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-----KIPHR--NIVSWSTMVWG 254
           AR + DEM  RD VSWN+++ GYA+    + A E+       KI H    + S    V  
Sbjct: 194 ARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 253

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            + +  M +  + F +M  K+LV W ++I  Y +  M  EA  LY +ME  G +PD  ++
Sbjct: 254 TTTENVMYVKDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S+L AC ++  L LG K+H  I + +   N  + NAL+DMYAKCG L+ A  VF  M  
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKS 372

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D+VSW AM+      G+G  A+ LFS+++D G  PD   FV  L AC+HAG +++G   
Sbjct: 373 RDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC 432

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M   Y I P++EH  CM+DLLGR+G++KEA R +Q M +EPN  +WG LLGACR H+
Sbjct: 433 FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHS 492

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             ++     D L +L     G Y +LSNI+A  G W +V N+R  MK    +K  GAS+V
Sbjct: 493 DTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EV+  +H F V D+ HP+S++IY+ ++ L K +K +G+
Sbjct: 553 EVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGY 590


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 314/573 (54%), Gaps = 12/573 (2%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   +++   II    + D  +   L S    C  +  A +VF+ +   DV  +N +I 
Sbjct: 135 DLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN    +A  +F +MQ  G+  ++ T   ++  C         + IH    + G   
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIES 254

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+ V N L++ Y+KCG   V+ A KLF  M  RD+ SWN++I G     +  EA   F+ 
Sbjct: 255 DVLVVNGLVNMYAKCG--NVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNR 312

Query: 209 MPER----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
           M  R    ++++  ++L   A     + G+    + +       ++V  + +V  Y+K G
Sbjct: 313 MQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVG-NALVNMYAKCG 371

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           ++  A  LF+RMP K +V W  IISGY++ G   EA  L+ +M+  G+KPD   ++S+L 
Sbjct: 372 NVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLP 431

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA    L  G ++H    +  F+ N  V   LVD+YAKCG+++ A  +F  M ++D+VS
Sbjct: 432 ACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVS 491

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W  M+    +HG GE AL LFS+M++ G   D   F  +L AC+HAG +D+G+QYF  M+
Sbjct: 492 WTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMK 551

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DYG+ P++EHY C++DLLGR+G L EA  ++++M +EP+A +WG LLGACR H  +EL 
Sbjct: 552 SDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELG 611

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E+    L  L   + G Y +LSNI+A    W  VA +R  MK+   +K  G S V V  +
Sbjct: 612 EQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRD 671

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V  F V D+ HP+SEQIY M+  L + ++  G+
Sbjct: 672 VQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGY 704



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 13/250 (5%)

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W   I GY + G   +A RLY QM+  G+ PD    +S++ AC     L  G KVH  
Sbjct: 86  VVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHED 145

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I    F+ +  V  AL  MY KCGSL+NA  VF+ M K+D+VSWNA++ G + +GQ  +A
Sbjct: 146 IIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEA 205

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMI 455
           L LFS M+  G  P+  T V V+  C H   +++G Q + Y++    GI   V     ++
Sbjct: 206 LALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS--GIESDVLVVNGLV 263

Query: 456 DLLGRSGRLKEALRLVQSMPVEP----NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           ++  + G +  A +L + MP+      NAII G  L + + H A+          ++++G
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNS-QHHEALAFFNR-----MQVRG 317

Query: 512 SDPGNYTMLS 521
             P + TM+S
Sbjct: 318 IKPNSITMVS 327


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 325/584 (55%), Gaps = 44/584 (7%)

Query: 14   RRLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-QMGLAIK 70
            R+L++++  +++      +   K+L A  I   L    Y   K++ S A+ +  +  A K
Sbjct: 448  RKLVDQRNSVKSFFNIVRMEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHK 507

Query: 71   VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
            VF+ I+ P   L+N LIR   Q+   A A   +   Q  G+  DN T+PF+LKAC   N 
Sbjct: 508  VFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINA 567

Query: 131  FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             +  + +H  I K G   DIFV NSLI  Y+ CG   +  A+ +F  M  +D+VSWNS+I
Sbjct: 568  LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACG--NLCYARSVFDEMVVKDVVSWNSLI 625

Query: 191  AGLVKGGELSEARRLFDEMP---------------------------------------E 211
             G  +     +   LF  M                                        E
Sbjct: 626  CGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIE 685

Query: 212  RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
             D    NT++D + + G++  A ++F  +  RNIV+ + M+  Y+K  D+  A+ +FD++
Sbjct: 686  VDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQI 745

Query: 272  PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
            P K L+ W+ +ISGY++     +A  ++ QM+ A +KPD   + S++++CA  G L LG 
Sbjct: 746  PKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGK 805

Query: 332  KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
             VH  + +   K +T + N+L+DMY KCGS   A+ VF  M +KD +SWN+++ GLA +G
Sbjct: 806  WVHEYVRRNNIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNG 865

Query: 392  QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
              +++L LF  M  EGF P+  TF+GVL AC +A  +++G+ +F SM+R Y + PQ++HY
Sbjct: 866  FEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHY 925

Query: 452  GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            GC++DLLGR+G+L++ALR +  MP++P+ ++W  LLG+C  H  V +AE V   L  L+ 
Sbjct: 926  GCVVDLLGRAGQLEKALRFITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEP 985

Query: 512  SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            S+ GNYT+LSN +A+   W++  NVR  M  T  +K  G S+VE
Sbjct: 986  SNSGNYTLLSNAYASAHRWSEAMNVRQCMADTDVRKSPGCSAVE 1029



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 227/425 (53%), Gaps = 65/425 (15%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D + + F LKAC G  W      +H L+ + G+    +V  +L++ Y  CG         
Sbjct: 88  DTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGC-------- 139

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
                                    L+++R  F+EMP ++AVSWN ++ G+A  GE+  A
Sbjct: 140 -------------------------LADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYA 174

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
             LFE++P RN+VSWS M+ GY++      A  LF RM A+                   
Sbjct: 175 RLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAE------------------- 215

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
                       G+ P + T+++++ A +  G + +G  +H    K     +  V N+L+
Sbjct: 216 ------------GISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLI 263

Query: 354 DMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           D+YAK GS+ N++ VF+ M  +++LVSW +++ G AMHG   KA+ LF+ M+  G  P++
Sbjct: 264 DLYAKIGSIQNSLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNR 323

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF+ VL AC+H G +++GV +F SM  +Y I P V+H+GC+ID+LGR+GRL+EA ++++
Sbjct: 324 ITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIR 383

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
             PVE NA +W TLLG C K+  VE+ E  +  ++ L+    G++ +LSN+      ++ 
Sbjct: 384 DFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLSNMLTELRRFSD 443

Query: 533 VANVR 537
              VR
Sbjct: 444 AEIVR 448



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 124/297 (41%), Gaps = 40/297 (13%)

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           +A  +FDR P     PW  ++  Y+     ++A +L+          D       L ACA
Sbjct: 46  IAHQVFDRRPT----PWHALLKAYSHGPHPQDALQLFRHARWHA-ADDTYAFTFALKACA 100

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
             G     M++H  + +  F+  T V  ALV++Y  CG L ++   F  M  K+ VSWN 
Sbjct: 101 GLGWPRCCMQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNV 160

Query: 383 MLYGLAMHGQGE-------------------------------KALGLFSRMKDEGFGPD 411
           ++ G A  G+ E                               +A+ LF RM  EG  P 
Sbjct: 161 VITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPS 220

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           + T + V+ A ++ G I  G       E++ G++  V     +IDL  + G ++ +LR+ 
Sbjct: 221 EITVLAVVPALSNVGKILIGEALHGYCEKE-GLVWDVRVGNSLIDLYAKIGSIQNSLRVF 279

Query: 472 QSMPVEPNAIIWGTLLGACRKHN-AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             M    N + W +++     H  +V+  E   D  +R  G  P   T LS + A +
Sbjct: 280 DEMLDRRNLVSWTSIISGFAMHGLSVKAVELFAD--MRRAGIRPNRITFLSVLHACS 334



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 105/481 (21%), Positives = 184/481 (38%), Gaps = 61/481 (12%)

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           +A  +F  M  +G+     T   ++ A +      + + +H    K G   D+ V NSLI
Sbjct: 204 EAVALFRRMMAEGISPSEITVLAVVPALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLI 263

Query: 158 DSYSKCGVVGVSLAKKLFMSM-GERDIVSWNSMIAGLVKGGELSEARRLFDEM------P 210
           D Y+K G +  SL  ++F  M   R++VSW S+I+G    G   +A  LF +M      P
Sbjct: 264 DLYAKIGSIQNSL--RVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRP 321

Query: 211 ER----------------------------------DAVSWNTILDGYAKAGEMNLAFEL 236
            R                                  D   +  I+D   +AG +  A ++
Sbjct: 322 NRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQI 381

Query: 237 FEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAK 293
               P   N   W T++   SK G++EM +    ++ A  +      +++S      M  
Sbjct: 382 IRDFPVEVNATVWRTLLGCCSKYGEVEMGERTMKKILALEREFGGDFVVLS-----NMLT 436

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNAL 352
           E  R  D      L     ++ S         +     ++HA  I    + C+  +   L
Sbjct: 437 ELRRFSDAEIVRKLVDQRNSVKSFFNIVRMEAI----KRLHAYYIVSGLYNCHYAMSKVL 492

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
                    L  A  VF+ +       WN ++ GLA       A+  + + +  G  PD 
Sbjct: 493 RSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDN 552

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF  +L AC     +++G Q    + +  G+L  +     +I L    G L  A  +  
Sbjct: 553 LTFPFILKACARINALNEGEQMHNHITK-LGLLSDIFVSNSLIHLYAACGNLCYARSVFD 611

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT--GDW 530
            M V+ + + W +L+    + N  +    +   L++ +G      TM+  + A T  GD+
Sbjct: 612 EMVVK-DVVSWNSLICGYSQCNRFKDILALFK-LMQNEGVKADKVTMIKVVSACTRLGDY 669

Query: 531 N 531
           +
Sbjct: 670 S 670


>gi|297742136|emb|CBI33923.3| unnamed protein product [Vitis vinifera]
          Length = 461

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/449 (44%), Positives = 279/449 (62%), Gaps = 4/449 (0%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  K V  +++T+P L+K C         + IHA I K G+  D+FV NSLI  YS CG 
Sbjct: 1   MVRKCVAPNHYTFPLLVKVCWEIGSIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGR 60

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
           +G   A+ +F      D+V+WNSMI G VK GE+  AR LF+EMPERD  SWN+++ GY 
Sbjct: 61  IGD--ARAMFEVCSISDLVTWNSMIDGYVKNGEIGAARELFEEMPERDLFSWNSMIAGYV 118

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
             G+M  A +LF K+P R+IVSW+ M+ GY++  +ME+A  LF+ MP + +V W I+++ 
Sbjct: 119 GNGDMTAAEDLFNKMPFRDIVSWNCMIDGYAQVQNMEIACELFNWMPYRNVVSWNIMLAL 178

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR-FKC 344
           Y       E  R++D+M    + P++ TL+S+L ACA  G L  G  +H+ I   R  + 
Sbjct: 179 YVRIKDYDECLRMFDKMMGETM-PNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEP 237

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  +  AL+ MYAKCG++D A  VF+ M+ + +VSWN+M+ G  MHGQ +KAL +F  M+
Sbjct: 238 DVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFLDME 297

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
             G  P+  TF+ VL AC H+G I +G  YF  M R Y I P+VEHYGCM+DLLGR+G +
Sbjct: 298 KRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYGCMVDLLGRAGLM 357

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
           K+   L++ MP+E    +WG LL ACR H+  ELAE V   LI L+  D G Y +LSNI+
Sbjct: 358 KDLEELIRKMPMEGGTALWGALLSACRTHSNSELAEIVAKRLIELEPRDIGPYLLLSNIY 417

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASS 553
           AA G W+ V  VR  MK+    K +G SS
Sbjct: 418 AAEGKWDDVEIVRKMMKERGLTKTTGLSS 446



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/409 (23%), Positives = 172/409 (42%), Gaps = 82/409 (20%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++   +++ A+I+K   + D ++   LI   ++C ++G A  +F      D+  +N++I 
Sbjct: 25  SIGDGEKIHARILKFGFELDLFVRNSLIHMYSVCGRIGDARAMFEVCSISDLVTWNSMID 84

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V+N     A  +F +M E+ +F+ N      +   NG      +     L  K   F 
Sbjct: 85  GYVKNGEIGAARELFEEMPERDLFSWNSMIAGYVG--NGD-----MTAAEDLFNKMP-FR 136

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DI   N +ID Y++  V  + +A +LF  M  R++VSWN M+A  V+  +  E  R+FD+
Sbjct: 137 DIVSWNCMIDGYAQ--VQNMEIACELFNWMPYRNVVSWNIMLALYVRIKDYDECLRMFDK 194

Query: 209 M---------------------------------------PERDAVSWNTILDGYAKAGE 229
           M                                        E D +    +L  YAK G 
Sbjct: 195 MMGETMPNEATLVSVLTACAHLGRLDRGKWIHSYIKNNRVIEPDVLLSTALLTMYAKCGA 254

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           M+LA ++F+K+ +R++VSW++M+ GY   G                              
Sbjct: 255 MDLARDVFDKMSNRSVVSWNSMIMGYGMHGQ----------------------------- 285

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNV 348
             A +A  ++  ME+ G  P+D T I +L+ACA SG++  G      + + Y+ +     
Sbjct: 286 --ADKALEMFLDMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEH 343

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAMLYGLAMHGQGEKA 396
              +VD+  + G + +   +   M  +   + W A+L     H   E A
Sbjct: 344 YGCMVDLLGRAGLMKDLEELIRKMPMEGGTALWGALLSACRTHSNSELA 392



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 93/198 (46%), Gaps = 23/198 (11%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           ++ D  ++  L++  A C  M LA  VF+ + +  V  +N++I     +    +A  +FL
Sbjct: 235 IEPDVLLSTALLTMYAKCGAMDLARDVFDKMSNRSVVSWNSMIMGYGMHGQADKALEMFL 294

Query: 105 DMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           DM+++G   ++ T+  +L AC        G  +F L++  + +  K  ++G       ++
Sbjct: 295 DMEKRGPMPNDATFICVLSACAHSGMILEGWWYFDLMRRAYKIEPKVEHYG------CMV 348

Query: 158 DSYSKCGVVG--VSLAKKLFMSMGERDIVSWNSMIAGLV--KGGELSE--ARRLFDEMPE 211
           D   + G++     L +K+ M  G      W ++++        EL+E  A+RL  E+  
Sbjct: 349 DLLGRAGLMKDLEELIRKMPMEGG---TALWGALLSACRTHSNSELAEIVAKRLI-ELEP 404

Query: 212 RDAVSWNTILDGYAKAGE 229
           RD   +  + + YA  G+
Sbjct: 405 RDIGPYLLLSNIYAAEGK 422


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 317/572 (55%), Gaps = 13/572 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   K++     K     D  +   LI   A C  +  A  VF+ + D DV  +N +I  
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG 309

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN    +AF +FL MQ++G   D+ TY  LL        +  V+ +H    + G   D
Sbjct: 310 LAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSD 369

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V ++ +  Y +CG   +  A+ +F  +  R++ +WN+MI G+ +     EA  LF +M
Sbjct: 370 LRVGSAFVHMYIRCG--SIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQM 427

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAF--ELFEKIPHRNIVSW---STMVWGYSKDGD 260
                  DA ++  IL   A  GE  L +  E+        +V     + +V  Y+K G+
Sbjct: 428 RREGFFPDATTFVNILS--ANVGEEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGN 485

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
              AK +FD M  + +  WT++ISG A+ G   EA  L+ QM   G+ PD  T +SIL+A
Sbjct: 486 TMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSA 545

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA +G L    +VH+         +  V NALV MYAKCGS+D+A  VF+ M ++D+ SW
Sbjct: 546 CASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSW 605

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
             M+ GLA HG+G  AL LF +MK EGF P+ Y+FV VL AC+HAG +D+G + F S+ +
Sbjct: 606 TVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQ 665

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           DYGI P +EHY CM+DLLGR+G+L+EA   + +MP+EP    WG LLGAC  +  +E+AE
Sbjct: 666 DYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAE 725

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                 ++LK      Y +LSNI+AATG+W +   VR  M++   +K  G S +EVDN++
Sbjct: 726 FAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQI 785

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D  HP+S++IY  +  L K LK  G+
Sbjct: 786 HSFVVGDTSHPESKEIYAKLKDLIKRLKAEGY 817



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 133/443 (30%), Positives = 224/443 (50%), Gaps = 19/443 (4%)

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           A +V+  M+ +G   +  TY  +LKAC         + IHA I + G+  D+ V  +L++
Sbjct: 14  AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVN 73

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DA 214
            Y KCG   +  A+ +F  M ER+++SW  MI GL   G   EA   F +M       ++
Sbjct: 74  MYVKCG--SIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNS 131

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWGYSKDGDMEMAKLLFDR 270
            ++ +IL+  A AG +    E+     +  +       + +V  Y+K G ++ A+++FD 
Sbjct: 132 YTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDG 191

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA--ESGLLG 328
           M  + +  WT++I G A+ G  +EA  L+ QME  G  P+  T +SIL A A   +G L 
Sbjct: 192 MVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALE 251

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
              +VH    K  F  +  V NAL+ MYAKCGS+D+A  VF+GM  +D++SWNAM+ GLA
Sbjct: 252 WVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLA 311

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            +G G +A  +F +M+ EGF PD  T++ +L      G  +  V+  +    + G++  +
Sbjct: 312 QNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWE-WVKEVHKHAVEVGLVSDL 370

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
                 + +  R G + +A  +   + V  N   W  ++G   +    +   E L   ++
Sbjct: 371 RVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQ---KCGREALSLFLQ 426

Query: 509 LK--GSDPGNYTMLSNIFAATGD 529
           ++  G  P   T ++ + A  G+
Sbjct: 427 MRREGFFPDATTFVNILSANVGE 449



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 143/517 (27%), Positives = 238/517 (46%), Gaps = 46/517 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   K++ A II+   Q D  +   L++    C  +  A  +F+ + + +V  +  +I 
Sbjct: 45  SLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIG 104

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
                    +AF  FL MQ +G   +++TY  +L A         V+ +H+     G   
Sbjct: 105 GLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 164

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+ V N+L+  Y+K G   +  A+ +F  M ERDI SW  MI GL + G   EA  LF +
Sbjct: 165 DLRVGNALVHMYAKSG--SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 222

Query: 209 MPER-----DAVSWNTILDGYA--KAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           M ER     +  ++ +IL+  A    G +    E+ +       +S     + ++  Y+K
Sbjct: 223 M-ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAK 281

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A+L+FD M  + ++ W  +I G A+ G   EA  ++ +M++ G  PD  T +S+
Sbjct: 282 CGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSL 341

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L     +G      +VH    +     +  V +A V MY +CGS+D+A  +F+ +  +++
Sbjct: 342 LNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNV 401

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-----------THAG 426
            +WNAM+ G+A    G +AL LF +M+ EGF PD  TFV +L A             H+ 
Sbjct: 402 TTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSY 461

Query: 427 FIDKGV------------------QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            ID G+                    +     D  +   V  +  MI  L + G   EA 
Sbjct: 462 AIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAF 521

Query: 469 RLVQSMPVE---PNAIIWGTLLGACRKHNAVELAEEV 502
            L   M  E   P+A  + ++L AC    A+E  +EV
Sbjct: 522 SLFLQMLREGIVPDATTYVSILSACASTGALEWVKEV 558



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 173/363 (47%), Gaps = 19/363 (5%)

Query: 189 MIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           MI G  + G   +A +++ +M       + +++ +IL        +    ++   I    
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 245 IVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
             S     + +V  Y K G ++ A+L+FD+M  + ++ WT++I G A  G  +EA   + 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           QM+  G  P+  T +SIL A A +G L    +VH+         +  V NALV MYAK G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL- 419
           S+D+A  VF+GM ++D+ SW  M+ GLA HG+G++A  LF +M+  G  P+  T++ +L 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 420 -CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
             A T  G ++  V+  +      G +  +     +I +  + G + +A RLV     + 
Sbjct: 241 ASAITSTGALE-WVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDA-RLVFDGMCDR 298

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVA 534
           + I W  ++G   ++       E     ++++      D   Y  L N   +TG W  V 
Sbjct: 299 DVISWNAMIGGLAQNGC---GHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVK 355

Query: 535 NVR 537
            V 
Sbjct: 356 EVH 358



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 155/290 (53%), Gaps = 7/290 (2%)

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GYAE G A++A ++Y QM   G +P++ T +SIL AC     L  G K+HA I +  
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           F+ +  V  ALV+MY KCGS+D+A  +F+ M +++++SW  M+ GLA +G+G++A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +M+ EGF P+ YT+V +L A   AG ++  V+  +S   + G+   +     ++ +  +S
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALE-WVKEVHSHAVNAGLALDLRVGNALVHMYAKS 179

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-KGSDPGNYTML 520
           G + +A R+V    VE +   W  ++G   +H      +E     +++ +G    N T  
Sbjct: 180 GSIDDA-RVVFDGMVERDIFSWTVMIGGLAQHGR---GQEAFSLFLQMERGGCLPNLTTY 235

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE-VHEFSVCDQL 569
            +I  A+   +  A   ++     A K    S + V N  +H ++ C  +
Sbjct: 236 LSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSI 285


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 206/591 (34%), Positives = 323/591 (54%), Gaps = 15/591 (2%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
              C  L+  K   QL A  +K D   D  +    +   A C  +  A ++FN +    +
Sbjct: 284 FRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSL 343

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YN +I  CV+N    +A + F  + + G+  +  +      AC         + +H+L
Sbjct: 344 QCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSL 403

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K     +I V NS++D Y KC    +S A  +F  M  RD VSWN++IA   + G   
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCE--ALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEE 461

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-- 254
           E   LF  M     E D  ++ ++L   +    +N   E+  +I  ++ +   + V G  
Sbjct: 462 ETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRII-KSGLGLDSFVGGAL 520

Query: 255 ---YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              Y K G +E AK + DR+  +T+V W  II+G+     +++A   + +M +  +KPD+
Sbjct: 521 IDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDN 580

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T   +L ACA    +GLG ++H  I K     +  + + LVDMY+KCG++ ++  VF  
Sbjct: 581 FTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEK 640

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
              KD V+WNAM+ G A HG GE+ALG F RM+ E   P+  TFV +L AC H GFIDKG
Sbjct: 641 APNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKG 700

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           + YF +M  +YG+ PQ+EHY CMID++GRSGR+ EAL+L+Q MP E +A+IW TLL  C+
Sbjct: 701 LHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICK 760

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  +E+AE+  + +++L+  D     +LSNI+A  G W KV+ +R  M+  + +K  G 
Sbjct: 761 IHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGC 820

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           S +EV +EVH F V ++ HP+ E+IY++++ L  ++K +G+   +   I E
Sbjct: 821 SWIEVKDEVHAFLVGNKTHPRYEEIYKILSVLLDEMKWIGYIPDIDFLIDE 871



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/506 (23%), Positives = 222/506 (43%), Gaps = 82/506 (16%)

Query: 83  YNTLIRACVQNSLNAQAFRVF-------LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           + + +R      L  +  R+F       L   +  + T   T+  +++ C+  N     +
Sbjct: 4   HTSSLRLIASRILYNKTLRIFTFCTISTLQQNQTKLPTKIRTFSHIIQECSDYNSLKPGK 63

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
             HA +   G+  D+++ N L+  Y +C    ++ A K+F  M +RD++S+N+MI+G   
Sbjct: 64  QAHARMIVSGFIPDVYISNCLMKMYLRCS--HLNYAYKVFEKMSQRDVISYNTMISGYAD 121

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF------EKIP-------- 241
            GE++ A   F + P+RD VSWN++L G+ + GE   + ++F      E++         
Sbjct: 122 AGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAV 181

Query: 242 --------------------------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
                                     ++++V+ S ++  Y+K   ++ +  +F  +P K 
Sbjct: 182 VLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKN 241

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
            V W+ II+G  +         L+ +M++ G+        S+  +CA    L +G ++HA
Sbjct: 242 WVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHA 301

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
              K  F  +  V  A +DMYAKCGSL +A  +FN + K  L  +NA++ G   + +G +
Sbjct: 302 HALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFE 361

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKGVQYFYSMERD------------- 441
           AL  F  +   G G ++ +  G   AC    G +D    +  S++               
Sbjct: 362 ALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILD 421

Query: 442 -YGILPQVEHYGCMIDLLGR---------------SGRLKEALRLVQSM---PVEPNAII 482
            YG    +    CM D + R               +G  +E L L  SM    +EP+   
Sbjct: 422 MYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFT 481

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIR 508
           +G++L AC    A+    E+ + +I+
Sbjct: 482 YGSVLKACSSQQALNSGMEIHNRIIK 507



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 139/521 (26%), Positives = 236/521 (45%), Gaps = 48/521 (9%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           +K R     +Q      +L   KQ  A++I      D YI+  L+     C  +  A KV
Sbjct: 41  TKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKV 100

Query: 72  FNDIQDPDVHLYNTLI-------------------------------RACVQNSLNAQAF 100
           F  +   DV  YNT+I                                  +QN    ++ 
Sbjct: 101 FEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSI 160

Query: 101 RVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
            VFLDM + + V  D  T+  +LKAC+      L   +H LI + G++ D+   ++L+D 
Sbjct: 161 DVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDM 220

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD-AVS-- 216
           Y+KC  +  SL  K+F  +  ++ V W+++IAG V+  E      LF EM +    VS  
Sbjct: 221 YAKCKRLDDSL--KIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQS 278

Query: 217 -WNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
            + ++    A    + +  +L           +I   +  +  Y+K G +  A+ +F+ +
Sbjct: 279 IYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSL 338

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P  +L  +  II G        EA + +  + ++GL  ++ +L    +ACA       G 
Sbjct: 339 PKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGR 398

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++H+   K   + N  V N+++DMY KC +L  A  +F+ M ++D VSWNA++     +G
Sbjct: 399 QLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNG 458

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
             E+ L LF+ M      PD++T+  VL AC+    ++ G++    + +  G+       
Sbjct: 459 NEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKS-GLGLDSFVG 517

Query: 452 GCMIDLLGRSGRLKEAL----RLVQSMPVEPNAIIWG-TLL 487
           G +ID+  + G ++EA     R+ Q   V  NAII G TLL
Sbjct: 518 GALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLL 558


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 304/552 (55%), Gaps = 9/552 (1%)

Query: 48   DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
            D  I   LI   A C  +  A  VF+ + D DV  +N ++    QN    +AF VFL MQ
Sbjct: 457  DLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQ 516

Query: 108  EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
            ++G+  D+ TY  LL      +    V  +H    + G   D  V ++ I  Y +CG   
Sbjct: 517  QEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG--S 574

Query: 168  VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG 223
            +  A+ LF  +  R + +WN+MI G  +     EA  LF +M       DA ++  IL  
Sbjct: 575  IDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA 634

Query: 224  YAKAGEMNLAFELFEKIPHRNIVSW---STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                  +    E+        +V     + +V  YSK G+++ AK +FD M  + +  WT
Sbjct: 635  NVDEEALEWVKEVHSHATDAGLVDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWT 694

Query: 281  IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            ++I G A+ G   +A   + QM   G+ PD  T +SIL+ACA +G L    +VH      
Sbjct: 695  MMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHNHAVSA 754

Query: 341  RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
                +  V NALV MYAKCGS+D+A SVF+ M ++D+ SW  M+ GLA HG+G +AL  F
Sbjct: 755  GLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFF 814

Query: 401  SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             +MK EGF P+ Y++V VL AC+HAG +D+G + F SM +DYGI P +EHY CM+DLLGR
Sbjct: 815  VKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGR 874

Query: 461  SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
            +G L+EA   + +MP+EP+   WG LLGAC  +  +E+AE      ++LK      Y +L
Sbjct: 875  AGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLL 934

Query: 521  SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
            SNI+AATG W +   VR  M++   +K  G S +EVDN +H F V D  HP+S++IY  +
Sbjct: 935  SNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESKEIYAQL 994

Query: 581  NTLGKDLKPVGH 592
            N L + LK  G+
Sbjct: 995  NDLIERLKAKGY 1006



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 277/561 (49%), Gaps = 28/561 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ   K +++   KQ+   IIK  ++++ Y+A KL+     C ++  A +VF+ +   ++
Sbjct: 125 LQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNI 184

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           +++ T+I    +      A RV+  M+++    +  TY  +LKAC         + IHA 
Sbjct: 185 YIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAH 244

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + G+  D+ V  +L++ Y KCG   +  A+ +F  M ER+++SW  MI GL   G   
Sbjct: 245 IIQSGFQSDVRVETALVNMYVKCG--SIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQ 302

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMV 252
           EA  LF +M       ++ ++ +IL+  A AG +    E+     +  +       + +V
Sbjct: 303 EAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALV 362

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G ++ A+++FD M  + +  WT++I G A+ G  +EA  L+ QM+  G  P+  
Sbjct: 363 HMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLT 422

Query: 313 TLISIL--AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           T +SIL  +A A +  L     VH    +  F  +  + NAL+ MYAKCGS+D+A  VF+
Sbjct: 423 TYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFD 482

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID- 429
           GM  +D++SWNAM+ GLA +G G +A  +F +M+ EG  PD  T++ +L   TH G  D 
Sbjct: 483 GMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL--NTH-GSTDA 539

Query: 430 -KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            + V   +    + G++         I +  R G + +A  L   + V  +   W  ++G
Sbjct: 540 LEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVR-HVTTWNAMIG 598

Query: 489 ACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
              +        E L   ++++  G  P   T + NI +A  D   +  V+   +     
Sbjct: 599 GAAQQRC---GREALSLFLQMQREGFIPDATTFI-NILSANVDEEALEWVK---EVHSHA 651

Query: 547 KPSGASSVEVDNE-VHEFSVC 566
             +G   + V N  VH +S C
Sbjct: 652 TDAGLVDLRVGNALVHTYSKC 672



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 204/390 (52%), Gaps = 12/390 (3%)

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           ++G+  D+F+Y  +L+ C  +    L + +H  I K G   +++V N L+  Y +CG   
Sbjct: 111 QQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCG--R 168

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG 223
           +  A+++F  + +++I  W +MI G  + G   +A R++D+M +     + +++ +IL  
Sbjct: 169 LQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKA 228

Query: 224 YAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
                 +    ++   I      S     + +V  Y K G +E A+L+FD+M  + ++ W
Sbjct: 229 CCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISW 288

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           T++I G A  G  +EA  L+ QM+  G  P+  T +SIL A A +G L    +VH+    
Sbjct: 289 TVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVN 348

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                +  V NALV MYAK GS+D+A  VF+GMT++D+ SW  M+ GLA HG+G++A  L
Sbjct: 349 AGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSL 408

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFID-KGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           F +M+  G  P+  T++ +L A   A     + V+  +    + G +  +     +I + 
Sbjct: 409 FLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMY 468

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            + G + +A RLV     + + I W  ++G
Sbjct: 469 AKCGSIDDA-RLVFDGMCDRDVISWNAMMG 497



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 195/364 (53%), Gaps = 13/364 (3%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           D+ S+  IL    K  ++ LA ++   I      +N+   + ++  Y + G ++ A+ +F
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D++  K +  WT +I GYAE G A++A R+YD+M +   +P++ T +SIL AC     L 
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLK 236

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
            G K+HA I +  F+ +  V  ALV+MY KCGS+++A  +F+ M +++++SW  M+ GLA
Sbjct: 237 WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLA 296

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            +G+G++A  LF +M+ EGF P+ YT+V +L A   AG ++  V+  +S   + G+   +
Sbjct: 297 HYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE-WVKEVHSHAVNAGLALDL 355

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
                ++ +  +SG + +A R+V     E +   W  ++G   +H      +E     ++
Sbjct: 356 RVGNALVHMYAKSGSIDDA-RVVFDGMTERDIFSWTVMIGGLAQHGR---GQEAFSLFLQ 411

Query: 509 LK--GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE-VHEFSV 565
           ++  G  P   T LS I  A+   +  A   +++    A++    S + + N  +H ++ 
Sbjct: 412 MQRNGCLPNLTTYLS-ILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAK 470

Query: 566 CDQL 569
           C  +
Sbjct: 471 CGSI 474



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 148/345 (42%), Gaps = 53/345 (15%)

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF----------- 268
           ++DG    G ++ +F + E    R +V  ST++ G      M  ++L F           
Sbjct: 17  LIDGQCGRGVISSSFRMNEAQVQRILVG-STLLSGRQ----MRHSRLYFLSISGCFKSEK 71

Query: 269 DRMPAKTLVPWTIIISGYAEKG----MAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            +     LV     + G AE+      AK+A  +     + G+  D  + ++IL  C + 
Sbjct: 72  HKYLPSVLVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQ 131

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             + L  +VH  I K   + N  V N L+ +Y +CG L  A  VF+ + KK++  W  M+
Sbjct: 132 EDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMI 191

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-----------THAGFIDKGVQ 433
            G A +G  E A+ ++ +M+ E   P++ T++ +L AC            HA  I  G Q
Sbjct: 192 GGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQ 251

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
               +E              ++++  + G +++A  +   M VE N I W  ++G    +
Sbjct: 252 SDVRVET------------ALVNMYVKCGSIEDAQLIFDKM-VERNVISWTVMIGGLAHY 298

Query: 494 NAVELAEEVLDCLIRLK--GSDPGNYTMLS----NIFAATGDWNK 532
                 +E     ++++  G  P +YT +S    N  A   +W K
Sbjct: 299 GR---GQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVK 340



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 77/210 (36%), Gaps = 43/210 (20%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   K++    +   L  D  +   L+   A C  +  A  VF+D+ + DV  +  +I  
Sbjct: 741 LEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGG 800

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A   F+ M+ +G   + ++Y  +L AC+           HA          
Sbjct: 801 LAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACS-----------HA---------- 839

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-----ERDIVSWNSMIAGLVKGGELSEARR 204
                 L+D             ++ F+SM      E  +  +  M+  L + G L EA  
Sbjct: 840 -----GLVDE-----------GRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAEL 883

Query: 205 LFDEMP-ERDAVSWNTILDGYAKAGEMNLA 233
               MP E D   W  +L      G + +A
Sbjct: 884 FILNMPIEPDDAPWGALLGACVTYGNLEMA 913


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 322/589 (54%), Gaps = 64/589 (10%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++ LA  +F  I  PD + YNTL+ A   +S  A A  +F +M  +    D+ TY  ++ 
Sbjct: 84  RLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMIS 139

Query: 124 --ACNG-----KNWFHLVQMIHALIYKC---------------GYFG-----DIFVPNSL 156
             A +G     +++F L     A+ +                 G F      D+   N+L
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNAL 199

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE------------------ 198
           +  Y + G   +S A++LF  M  RD+VSWN M++G  + G+                  
Sbjct: 200 MSGYVQWG--KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257

Query: 199 -------------LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                        L EARR+FD MPER+AVSWN ++  Y +   M+ A ELF  +P RN+
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            SW+TM+ GY++ G +E AK +FD MP K  V W  +++ Y++ G ++E  +L+ +M   
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G   +      +L+ CA+   L  GM++H  + +  +     V NAL+ MY KCG++++A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            + F  M ++D+VSWN M+ G A HG G++AL +F  M+     PD  T VGVL AC+H+
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G ++KG+ YFYSM  D+G+  + EHY CMIDLLGR+GRL EA  L++ MP EP++ +WG 
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGA R H   EL     + +  L+  + G Y +LSNI+A++G W     +R+ M++   
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           +K  G S +EV N+VH FS  D +HP+ E+IY  +  L   +K  G+ +
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 231/491 (47%), Gaps = 70/491 (14%)

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           +P+V   N  I A ++    A A R+F  M  +   T    Y  +L   +      L   
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTST----YNAMLAGYSANGRLPLA-- 88

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA--KKLFMSMGERDIVSWNSMIAGLV 194
             A +++     D +  N+L+ + +    V  SLA  + LF  M  RD V++N MI+   
Sbjct: 89  --ASLFRAIPRPDNYSYNTLLHALA----VSSSLADARGLFDEMPVRDSVTYNVMISSHA 142

Query: 195 KGGELSEARRLFDEMPERDAV-------------------------------SWNTILDG 223
             G +S AR  FD  PE+DAV                               SWN ++ G
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           Y + G+M+ A ELF+++P R++VSW+ MV GY++ GDM  A+ LFD  P + +  WT ++
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SGYA+ GM +EA R++D M E     +  +  +++AA  +  ++    ++   +      
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMM-----P 313

Query: 344 C-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
           C N    N ++  YA+ G L+ A +VF+ M +KD VSW AML   +  G  E+ L LF  
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER-DYGILPQVEHYGC-----MID 456
           M   G   ++  F  VL  C     ++ G+Q    + R  YG+       GC     ++ 
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLA 426

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  + G +++A    + M  E + + W T++    +H   + A E+ D ++R   + P +
Sbjct: 427 MYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFD-MMRTTSTKPDD 484

Query: 517 YTMLSNIFAAT 527
            T++  + A +
Sbjct: 485 ITLVGVLAACS 495


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 211/625 (33%), Positives = 333/625 (53%), Gaps = 64/625 (10%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +   +   ++LFA + +    R       +++  A   ++  A+  F  I  PD   YNT
Sbjct: 119 RAGRVPDAERLFAAMPR----RSTSTYNTMLAGYAANGRLPQALSFFRSIPRPDSFSYNT 174

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK--ACNG-----KNWFHLVQMIH 138
           L+ A   +S  A    +F +M  K    D+ +Y  ++   A +G     +++F L     
Sbjct: 175 LLHALGVSSSLADVRALFDEMPVK----DSVSYNVMISSHANHGLVSLARHYFDLAPEKD 230

Query: 139 ALIYK---CGYF--GDIFVPNSLIDSYSKCGVVG-------------VSLAKKLFMSMGE 180
           A+ +      Y   G I     L DS ++   +              +  A+K+F  M +
Sbjct: 231 AVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQ 290

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFD-------------------------------EM 209
           RD+VSWN+M++G  + G+++EARRLFD                                M
Sbjct: 291 RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAM 350

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           P+++AVSWN ++  Y +   M  A ELF+ +P RN+ SW+TM+ GY++ G ++ A+ +F 
Sbjct: 351 PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFG 410

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            MP K  V W  +++ Y++ G ++E  +L+ +M   G   +      +L+ CA+   L  
Sbjct: 411 MMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALEC 470

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           GM++H+ + K  +     V NAL+ MY KCGS++ A S F  M ++D+VSWN M+ G A 
Sbjct: 471 GMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYAR 530

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG G++AL +F  M+     PD  T VGVL AC+H+G ++KG+ YFYSM RD+G+  + E
Sbjct: 531 HGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPE 590

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY CMIDLLGR+GRL EA+ L++ MP EP++ +WG LLGA R H   EL     + +  L
Sbjct: 591 HYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFEL 650

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  + G Y +LSNI+A++G W  V  +R  M +   +K  G S +EV N+VH FSV D +
Sbjct: 651 EPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSV 710

Query: 570 HPKSEQIYQMINTLGKDLKPVGHAA 594
           HP+ E IY  +  L   +K  G+ +
Sbjct: 711 HPEREDIYAFLEDLDIRMKKAGYVS 735



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 198/476 (41%), Gaps = 114/476 (23%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++   N  I ++ + G V    A++LF +M  R   ++N+M+AG    G L +A   F  
Sbjct: 106 EVIRRNRAITAHMRAGRV--PDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRS 163

Query: 209 MPERDAVSWNTIL-------------------------------DGYAKAGEMNLAFELF 237
           +P  D+ S+NT+L                                 +A  G ++LA   F
Sbjct: 164 IPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYF 223

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD---------------------------- 269
           +  P ++ VSW+ M+  Y ++G ++ A+ LFD                            
Sbjct: 224 DLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQK 283

Query: 270 ---RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP--DDGTLISILAACAES 324
              +MP + +V W  ++SGYA +G   EA RL+D      + P  D  T  +I++  A++
Sbjct: 284 MFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFD------VAPIRDVFTWTAIVSGYAQN 337

Query: 325 GLLGLGMKV------------HASINKY--------------RFKC-NTNVCNALVDMYA 357
           G+L    +V            +A +  Y                 C N    N ++  YA
Sbjct: 338 GMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYA 397

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           + G LD A ++F  M +KD VSW AML   +  G  E+ L LF  M   G   ++  F  
Sbjct: 398 QAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFAC 457

Query: 418 VLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGC-----MIDLLGRSGRLKEALRLV 471
           VL  C     ++ G+Q    + +  YG+       GC     ++ +  + G ++EA    
Sbjct: 458 VLSTCADIAALECGMQLHSRLIKAGYGV-------GCFVGNALLAMYFKCGSMEEAHSAF 510

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + M  E + + W T++    +H   + A EV D + R   + P + T++  + A +
Sbjct: 511 EEME-ERDVVSWNTMIAGYARHGFGKEALEVFDTM-RKTSTKPDDITLVGVLAACS 564


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/578 (35%), Positives = 311/578 (53%), Gaps = 41/578 (7%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           Q L    ++   + + ++II  DL+ +  +  KL+ + A  + +  A KVF++I + +V 
Sbjct: 47  QVLDTYPDIRTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVI 106

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           + N +IR+ V N    +  +VF  M    V  D++T+P +LKAC+      + + IH   
Sbjct: 107 IINVMIRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSA 166

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G    +FV N L+  Y KCG                                  LSE
Sbjct: 167 TKVGLSSTLFVGNGLVSMYGKCGF---------------------------------LSE 193

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-----KIPHR--NIVSWSTMVWG 254
           AR + DEM  RD VSWN+++ GYA+    + A E+       KI H    + S    V  
Sbjct: 194 ARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSN 253

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            + +  M +  + F +M  K+LV W ++I  Y +  M  EA  LY +ME  G +PD  ++
Sbjct: 254 TTTENVMYVKDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSI 312

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S+L AC ++  L LG K+H  I + +   N  + NAL+DMYAKCG L+ A  VF  M  
Sbjct: 313 TSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKS 372

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D+VSW AM+      G+G  A+ LFS+++D G  PD   FV  L AC+HAG +++G   
Sbjct: 373 RDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSC 432

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M   Y I P++EH  CM+DLLGR+G++KEA R +Q M +EPN  +WG LLGACR H+
Sbjct: 433 FKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHS 492

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             ++     D L +L     G Y +LSNI+A  G W +V N+R  MK    +K  GAS+V
Sbjct: 493 DTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNV 552

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EV+  +H F V D+ HP+S++IY+ ++ L K +K +G+
Sbjct: 553 EVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGY 590


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/574 (34%), Positives = 315/574 (54%), Gaps = 50/574 (8%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLA-----------IKVFNDIQDPDVHLYNTL 86
           A+ I     ++P +  +++ S +  R+  LA           +  ++  +DP   L+N +
Sbjct: 7   ARXITTGFIKNPNLTTRIVLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDP--FLWNAV 64

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I++         A  +F  M E  V  D F+   +LKAC+   +      +H  + K G 
Sbjct: 65  IKSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKACSRLGFVDFGMQVHGFLRKTGI 124

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR--- 203
           + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+NSMI G VK G +  AR   
Sbjct: 125 YSDLFLQNCLIGLYLKCGCLG--FARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELF 182

Query: 204 -------------------------------RLFDEMPERDAVSWNTILDGYAKAGEMNL 232
                                          +LFDEMPE+D +SWN+++DGY K   +  
Sbjct: 183 DLMPREKKNLISWNCMISGYTQSEDGVNVASKLFDEMPEKDLISWNSLIDGYVKHRRIED 242

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A  LF+ +P +++V+W+TM+ GY+K G +  AK LFD MP + +V +  +++GY +    
Sbjct: 243 AKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGYVQNKYH 302

Query: 293 KEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
            EA  +++ ME E+ L PD+ TL+ +L+A A+ G L   + +H  I   +F+    +  A
Sbjct: 303 AEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLGGKLGVA 362

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+D Y+KCGS+  +M VF  +  K +  WNAM+ GLA+HG GE A  +  +++     PD
Sbjct: 363 LIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQIEKRSIKPD 422

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             TF+GVL AC+H+G + +G+  F  M R + I P+++HYGCM+D+L RSG ++ A  L+
Sbjct: 423 DITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQHYGCMVDILSRSGSIELAKNLI 482

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           + MP+EPN +IW T L AC  H   E  E V   L    G +P ++ +LSN++A+ G W 
Sbjct: 483 EEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLFLQGGYNPSSFVLLSNMYASFGMWK 542

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +V  VR  MK+ + +K  G S +E+D  VHEF V
Sbjct: 543 EVRRVRTTMKERKLRKIPGCSWIELDGNVHEFFV 576


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/569 (35%), Positives = 315/569 (55%), Gaps = 36/569 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLY 83
           KCK+L   KQ+ A I K  L   P ++ KL+   ++ L   +  A ++F DI++PDV +Y
Sbjct: 14  KCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLFLDIRNPDVFMY 73

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGV-FTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           NTLIR    +   + A ++F++M+ K V   D+F++ FLLKA            +H L  
Sbjct: 74  NTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAV 133

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
             G    +FV  +LI  Y++C                                   L  A
Sbjct: 134 GYGLDSHLFVGTTLISMYAECAC---------------------------------LVFA 160

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R++FDEM E + V+WN I+    +   +  A ++F  +P RN+ SW+ M+ GY+K G+++
Sbjct: 161 RKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQ 220

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           +A+ +F +MP K  V W+ +I G+A  G   +A   + ++   G++P++ +L  +L+ACA
Sbjct: 221 LAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACA 280

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           ++G    G  +H  + K  F    +V NAL+D Y+KCG+LD A  VF+ M ++  VSW A
Sbjct: 281 QAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTA 340

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G+AMHG GE+A+ LF+ M++    PD  TF+ +L AC+HAG +D G  YF  M   Y
Sbjct: 341 MIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTY 400

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P +EHYGCM+DL GR+G+L++A   V  MP+ PN I+W TLLGAC  H  + LA +V
Sbjct: 401 GIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQV 460

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L  L   + G++ +LSNI+A  G W  VA +R  M   R +K  G S +EV+  ++ 
Sbjct: 461 KRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYS 520

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           F   ++ +  + + +Q +  +   L+  G
Sbjct: 521 FVAGEKQNDIAVEAHQKLREIMSRLRIEG 549


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/566 (36%), Positives = 315/566 (55%), Gaps = 42/566 (7%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-QMGLAIKVFNDIQDPDVHLYNTLIR 88
           +   K+L A  I   L    Y   K++ S A+ +  +  A KVF+ I+ P   L+N LIR
Sbjct: 1   MEAIKRLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIR 60

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+   A A   +   Q  G+  DN T+PF+LKAC   N  +  + +H  I K G   
Sbjct: 61  GLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKACARINALNEGEQMHNHITKLGLLS 120

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DIFV NSLI  Y+ CG   +  A+ +F  M  +D+VSWNS+I G  +     +   LF  
Sbjct: 121 DIFVSNSLIHLYAACG--NLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKL 178

Query: 209 MP---------------------------------------ERDAVSWNTILDGYAKAGE 229
           M                                        E D    NT++D + + G+
Sbjct: 179 MQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQ 238

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           +  A ++F  +  RNIV+ + M+  Y+K  D+  A+ +FD++P K L+ W+ +ISGY++ 
Sbjct: 239 LQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQA 298

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
               +A  ++ QM+ A +KPD   + S++++CA  G L LG  VH  + +   K +T + 
Sbjct: 299 NHFSDALEIFRQMQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIME 358

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N+L+DMY KCGS   A+ VF  M +KD +SWN+++ GLA +G  +++L LF  M  EGF 
Sbjct: 359 NSLIDMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFR 418

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  TF+GVL AC +A  +++G+ +F SM+R Y + PQ++HYGC++DLLGR+G+L++ALR
Sbjct: 419 PNGVTFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALR 478

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
            +  MP++P+ ++W  LLG+C  H  V +AE V   L  L+ S+ GNYT+LSN +A+   
Sbjct: 479 FITEMPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSNSGNYTLLSNAYASAHR 538

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVE 555
           W++  NVR  M  T  +K  G S+VE
Sbjct: 539 WSEAMNVRQCMADTDVRKSPGCSAVE 564


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 322/589 (54%), Gaps = 64/589 (10%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++ LA  +F  I  PD + YNTL+ A   +S  A A  +F +M  +    D+ TY  ++ 
Sbjct: 84  RLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMIS 139

Query: 124 --ACNG-----KNWFHLVQMIHALIYKC---------------GYFG-----DIFVPNSL 156
             A +G     +++F L     A+ +                 G F      D+   N+L
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNAL 199

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE------------------ 198
           +  Y + G   +S A++LF  M  RD+VSWN M++G  + G+                  
Sbjct: 200 MSGYVQWG--KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257

Query: 199 -------------LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                        L EARR+FD MPER+AVSWN ++  Y +   M+ A ELF  +P RN+
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            SW+TM+ GY++ G +E AK +FD MP K  V W  +++ Y++ G ++E  +L+ +M   
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G   +      +L+ CA+   L  GM++H  + +  +     V NAL+ MY KCG++++A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            + F  M ++D+VSWN M+ G A HG G++AL +F  M+     PD  T VGVL AC+H+
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G ++KG+ YFYSM  D+G+  + EHY CMIDLLGR+GRL EA  L++ MP EP++ +WG 
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGA R H   EL     + +  L+  + G Y +LSNI+A++G W     +R+ M++   
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           +K  G S +EV N+VH FS  D +HP+ E+IY  +  L   +K  G+ +
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 231/491 (47%), Gaps = 70/491 (14%)

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           +P+V   N  I A ++    A A R+F  M  +   T    Y  +L   +      L   
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTST----YNAMLAGYSANGRLPLA-- 88

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA--KKLFMSMGERDIVSWNSMIAGLV 194
             A +++     D +  N+L+ + +    V  SLA  + LF  M  RD V++N MI+   
Sbjct: 89  --ASLFRAIPRPDNYSYNTLLHALA----VSSSLADARGLFDEMPVRDSVTYNVMISSHA 142

Query: 195 KGGELSEARRLFDEMPERDAV-------------------------------SWNTILDG 223
             G +S AR  FD  PE+DAV                               SWN ++ G
Sbjct: 143 NHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSG 202

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           Y + G+M+ A ELF+++P R++VSW+ MV GY++ GDM  A+ LFD  P + +  WT ++
Sbjct: 203 YVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVV 262

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SGYA+ GM +EA R++D M E     +  +  +++AA  +  ++    ++   +      
Sbjct: 263 SGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMM-----P 313

Query: 344 C-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
           C N    N ++  YA+ G L+ A +VF+ M +KD VSW AML   +  G  E+ L LF  
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER-DYGILPQVEHYGC-----MID 456
           M   G   ++  F  VL  C     ++ G+Q    + R  YG+       GC     ++ 
Sbjct: 374 MGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLA 426

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  + G +++A    + M  E + + W T++    +H   + A E+ D ++R   + P +
Sbjct: 427 MYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFD-MMRTTSTKPDD 484

Query: 517 YTMLSNIFAAT 527
            T++  + A +
Sbjct: 485 ITLVGVLAACS 495


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 310/518 (59%), Gaps = 27/518 (5%)

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLK-ACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           +A+   ++  MQ  GV  D F YP L+K A  G   FH      A + K G+  D FV N
Sbjct: 11  HAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFH------AHVLKLGHGSDAFVRN 64

Query: 155 SLIDSYSK------CGVVGV------SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           ++ID Y++        V G         A+ LF  M ER++++W +M+ G  K  +L  A
Sbjct: 65  AVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAA 124

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI--PHRNIVSWSTMVWGYSKDGD 260
           RR FD MPER  VSWN +L GYA+ G    A  LF+++   +RN V+W+ M+  Y + GD
Sbjct: 125 RRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGD 184

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILA 319
           ++ A+ LF+ MP + +V W  +I+GYA+ G +  A  L+ +M  A  L PD+ T++S+++
Sbjct: 185 LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 244

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC   G L LG  V   + + + K + +  NA++ MY++CGS+++A  VF  M  +D+VS
Sbjct: 245 ACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 304

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           +N ++ G A HG G +A+ L S MK+ G  PD+ TF+GVL AC+HAG +++G + F S++
Sbjct: 305 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 364

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
                 P ++HY CM+DLLGR G L++A R ++ MP+EP+A ++G+LL A R H  VEL 
Sbjct: 365 D-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELG 419

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E   + L  L+  + GN+ +LSNI+A+ G W  V  +R  MKK   +K +G S VE   +
Sbjct: 420 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 479

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +H+F V D+ H +S+ IYQ++  L K ++  G+ A  S
Sbjct: 480 LHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKS 517



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 152/339 (44%), Gaps = 58/339 (17%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +R+      +++  A  + +  A + F+ + +  V  +N ++    QN L  +A R+F +
Sbjct: 102 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 161

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M   G + ++ T+                                   N++I +Y + G 
Sbjct: 162 ML--GAYRNSVTW-----------------------------------NAMISAYMRVG- 183

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-----DAVSWNTI 220
             +  A+KLF +M  R++V+WNSMIAG  + G+ + A  LF EM        D V+  ++
Sbjct: 184 -DLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSV 242

Query: 221 LDGYAKAGEMNLAFE----LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           +      G + L       L E     +I   + M++ YS+ G ME AK +F  M  + +
Sbjct: 243 ISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDV 302

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V +  +ISG+A  G   EA  L   M+E G++PD  T I +L AC+ +GLL  G KV  S
Sbjct: 303 VSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES 362

Query: 337 INKY---RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           I       + C       +VD+  + G L++A      M
Sbjct: 363 IKDPAIDHYAC-------MVDLLGRVGELEDAKRTMERM 394



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 9/243 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           +LF ++  L   R+      +IS+      +  A K+FN +   +V  +N++I    QN 
Sbjct: 157 RLFDEM--LGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNG 214

Query: 95  LNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            +A A  +F +M   K +  D  T   ++ AC       L   +   + +      I   
Sbjct: 215 QSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGH 274

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           N++I  YS+CG   +  AK++F  M  RD+VS+N++I+G    G   EA  L   M    
Sbjct: 275 NAMIFMYSRCG--SMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGG 332

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
            E D V++  +L   + AG +    ++FE I    I  ++ MV    + G++E AK   +
Sbjct: 333 IEPDRVTFIGVLTACSHAGLLEEGRKVFESIKDPAIDHYACMVDLLGRVGELEDAKRTME 392

Query: 270 RMP 272
           RMP
Sbjct: 393 RMP 395


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/605 (34%), Positives = 328/605 (54%), Gaps = 42/605 (6%)

Query: 5    IRAPTWFSKRRLLEEKL--QNLHKCKNLNQTKQLFAQI-IKLDLQRDPYIAPKLISSLAL 61
            I+ P +  +  +L E L  Q L K  ++   K+L ++I I  DL  +P +  KL+ + A+
Sbjct: 1013 IQKPKFTQQXVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAV 1072

Query: 62   CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
            C +      +F++I   +V  +N +IR+ V N L + A  VF +M   G+  D++TYP +
Sbjct: 1073 CGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCV 1132

Query: 122  LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
            LKA +G     +   IHA + + G   ++FV N LI  Y KCG                 
Sbjct: 1133 LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC---------------- 1176

Query: 182  DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI- 240
                             L EA R+ DZMP RD VSWN+++ G A+ G+ + A E+ +++ 
Sbjct: 1177 -----------------LVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 1219

Query: 241  -----PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                 P    ++        +   ++   K +F ++  K+LV W ++I+ Y    M  EA
Sbjct: 1220 LLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 1279

Query: 296  ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
              ++ QME+  + PD  ++ S+L AC +   L LG ++H  + + R + N  + NAL+DM
Sbjct: 1280 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 1339

Query: 356  YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
            YAKCG L+ A  VF+ M  +D+VSW +M+    M+G+G  A+ LFSRM+D G  PD   F
Sbjct: 1340 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 1399

Query: 416  VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
            V VL AC+HAG +D+G  YF  M  +  I+P++EH+ CM+DLLGR+G++ EA   ++ MP
Sbjct: 1400 VSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 1459

Query: 476  VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
            +EPN  +WG LL ACR ++ + +     D L +L     G Y +LSNI+A  G W  V  
Sbjct: 1460 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 1519

Query: 536  VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
            VR  MK    +K  G S+ E+DN VH F   DQ HP+S+QIY+ ++ L   +K  G+  +
Sbjct: 1520 VRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPE 1579

Query: 596  LSAEI 600
              + +
Sbjct: 1580 TDSAL 1584


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/611 (33%), Positives = 325/611 (53%), Gaps = 72/611 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ   + ++L Q +++ A I+K  +Q + Y+   L+S  A C  +  A +VF+ I+D ++
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I A V  + N +A++ +  M+  G   D  T+  LL A        + Q +H  
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHME 222

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G   +  V  SL+  Y+KCG                                 ++S
Sbjct: 223 IAKAGLELEPRVGTSLVGMYAKCG---------------------------------DIS 249

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP------------------- 241
           +A+ +FD++PE++ V+W  ++ GYA+ G++++A EL EK+                    
Sbjct: 250 KAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT 309

Query: 242 -----------HRNIVS-------W--STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                      HR I+        W  + ++  Y K G ++ A+ LF  +P + +V WT 
Sbjct: 310 TPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTA 369

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +++GYA+ G   EA  L+ +M++ G+KPD  T  S L +C+    L  G  +H  +    
Sbjct: 370 MVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAG 429

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           +  +  + +ALV MYAKCGS+D+A  VFN M+++++V+W AM+ G A HG+  +AL  F 
Sbjct: 430 YSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE 489

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +MK +G  PDK TF  VL ACTH G +++G ++F SM  DYGI P VEHY C +DLLGR+
Sbjct: 490 QMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRA 549

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G L+EA  ++ +MP +P   +WG LL ACR H+ VE  E   + +++L   D G Y  LS
Sbjct: 550 GHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALS 609

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+AA G +     VR  M+K    K  G S +EVD +VH F V D+ HP++++IY  + 
Sbjct: 610 NIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKEIYAELG 669

Query: 582 TLGKDLKPVGH 592
            L + +K  G+
Sbjct: 670 KLTEQIKEQGY 680



 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 221/430 (51%), Gaps = 15/430 (3%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           +Q   V++D F    LL+ C         + +HA I K G   + ++ N+L+  Y+KCG 
Sbjct: 89  LQGTRVYSDVFR--GLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCG- 145

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL 221
             ++ A+++F  + +R+IVSW +MI   V G +  EA + ++ M     + D V++ ++L
Sbjct: 146 -SLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLL 204

Query: 222 DGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           + +     + +  ++  +I    +       +++V  Y+K GD+  A+++FD++P K +V
Sbjct: 205 NAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVV 264

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT++I+GYA++G    A  L ++M++A + P+  T  SIL  C     L  G KVH  I
Sbjct: 265 TWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYI 324

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            +  +     V NAL+ MY KCG L  A  +F  +  +D+V+W AM+ G A  G  ++A+
Sbjct: 325 IQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAI 384

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF RM+ +G  PDK TF   L +C+   F+ +G +  +      G    V     ++ +
Sbjct: 385 DLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEG-KSIHQQLVHAGYSLDVYLQSALVSM 443

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
             + G + +A RLV +   E N + W  ++  C +H     A E  +  ++ +G  P   
Sbjct: 444 YAKCGSMDDA-RLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFE-QMKKQGIKPDKV 501

Query: 518 TMLSNIFAAT 527
           T  S + A T
Sbjct: 502 TFTSVLSACT 511



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 108/222 (48%), Gaps = 2/222 (0%)

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           +S   ++G  KEA  + + M   G +        +L  CA    L  G +VHA+I K   
Sbjct: 68  VSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 127

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
           + N  + N L+ MYAKCGSL +A  VF+G+  +++VSW AM+       Q  +A   +  
Sbjct: 128 QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYET 187

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           MK  G  PDK TFV +L A T+   +  G +    + +  G+  +      ++ +  + G
Sbjct: 188 MKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKA-GLELEPRVGTSLVGMYAKCG 246

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            + +A  +   +P E N + W  L+    +   V++A E+L+
Sbjct: 247 DISKAQVIFDKLP-EKNVVTWTLLIAGYAQQGQVDVALELLE 287


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 311/581 (53%), Gaps = 41/581 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++   K+L   I  L+  ++P +  KL+ S A C + GL  KVF+++ D +V  YN +IR
Sbjct: 33  DIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIR 92

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           + V N        VF +M   G   DN+TYP +LKAC+         +IH  + K G   
Sbjct: 93  SYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDF 152

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++FV N LI  Y KCG                                  L EARR+FDE
Sbjct: 153 NLFVGNGLIAMYGKCGC---------------------------------LFEARRVFDE 179

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-------NIVSWSTMVWGYSKDGDM 261
           M  +D VSWN+++ GYA     + A E+  ++           + S    V   S +  +
Sbjct: 180 MIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVL 239

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
            + K+ F  +  K L+ W ++I  Y +  +  +A  LY QME+  ++PD  T  S+L AC
Sbjct: 240 YVEKI-FVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPAC 298

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            +   L LG ++H  + K +   N  + N+L+DMYA+CG LD+A  VF+ M  +D+ SW 
Sbjct: 299 GDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDVASWT 358

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +++    M GQG  A+ LF+ M + G  PD   FV +L AC+H+G +D+G  YF  M  D
Sbjct: 359 SLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDD 418

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y I P++EHY C++DLLGR+GR+ EA  +++ MP+EPN  +W TLL +CR    +++   
Sbjct: 419 YRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTNMDIGIL 478

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             D L++L     G Y +LSNI+A  G W +V  +R  MK+ + +K  G S+VE++N+VH
Sbjct: 479 AADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVELNNQVH 538

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
            F   D  HP+S++IY+ +  L   +K +G+  +  + + +
Sbjct: 539 TFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHD 579


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/588 (34%), Positives = 336/588 (57%), Gaps = 27/588 (4%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q +Q+ A+++ L LQ   ++  KLI + +    +  A +VF+D+  P V  +N +IR   
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYS 95

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +N+    A  ++  MQ   V  D+FT+P LLKAC G +   + + +HA +++ G+  D+F
Sbjct: 96  RNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVF 155

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           V N LI  Y+KC  +G   A+ +F  + + ER IVSW ++++   + GE  EA  +F +M
Sbjct: 156 VQNGLIALYAKCRRLGC--ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM 213

Query: 210 PERDA----VSWNTILDGYA-----------KAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
            + D     V+  ++L+ +             A  M +  E    +    ++S +TM   
Sbjct: 214 RKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDL----LISLNTM--- 266

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y+K G +  AK+LFD+M +  L+ W  +ISGYA+ G AK+A  L+ +M    ++PD  ++
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISI 326

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S ++ACA+ G L     +   +++  ++ +  + +AL+DM+AKCGS++ A SVF+    
Sbjct: 327 TSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLD 386

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D+V W+AM+ G  +HGQ  +A+ L+  M+ +G  P+  TF+G+L AC H+G + +G  +
Sbjct: 387 RDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWF 446

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M  D+ I PQ +HY C+IDLLGR+G L +A  +++ MPV+P   +WG LL AC+KH 
Sbjct: 447 FNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHR 505

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            VEL +     L  +  S+ G+Y  LSN++AA   W++VA VR++MK+    K  G S V
Sbjct: 506 HVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWV 565

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           EV   +  F V D+ HP+ E+I + +  +   LK  G  A   A + +
Sbjct: 566 EVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHD 613



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 175/377 (46%), Gaps = 13/377 (3%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL--YNTL 86
           +L   + + AQ+ +L  + D ++   LI+  A CR++G A  VF  +  P+  +  +  +
Sbjct: 134 HLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAI 193

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           + A  QN    +A  +F  M++  V  D      +L A          + IHA + K G 
Sbjct: 194 VSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGL 253

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             +  +  SL   Y+KCG   V+ AK LF  M   +++ WN+MI+G  K G   +A  LF
Sbjct: 254 ETEPDLLISLNTMYAKCG--QVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLF 311

Query: 207 DEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKD 258
            EM  +    D +S  + +   A+ G +  A  + E +       ++   S ++  ++K 
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKC 371

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +E A+ +FDR   + +V W+ +I GY   G A+EA  LY  ME  G+ P+D T + +L
Sbjct: 372 GSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLL 431

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDL 377
            AC  SG++  G      +  ++          ++D+  + G LD A  V   M  +  +
Sbjct: 432 IACNHSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGV 491

Query: 378 VSWNAMLYGLAMHGQGE 394
             W A+L     H   E
Sbjct: 492 TVWGALLSACKKHRHVE 508



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 155/370 (41%), Gaps = 72/370 (19%)

Query: 4   PIRAPTWFSKRRLLEEK--------LQNLHKC-KNLNQTKQLFAQIIKLDLQRDPYIAPK 54
           P+ A   FS+ R ++ K        + N   C ++L Q + + A ++K+ L+ +P +   
Sbjct: 203 PVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLIS 262

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L +  A C Q+  A  +F+ ++ P++ L+N +I    +N     A  +F +M  K V  D
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPD 322

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             +    + AC         + +   + +  Y  D+F+ ++LID ++KCG   V  A+ +
Sbjct: 323 TISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCG--SVECARSV 380

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN---------------- 218
           F    +RD+V W++MI G    G+  EA  L+  M ERD V  N                
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAM-ERDGVHPNDVTFLGLLIACNHSGM 439

Query: 219 ------------------------TILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVW 253
                                    I+D   +AG ++ A+E+ + +P    +  W  ++ 
Sbjct: 440 VREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 254 GYSKDGDMEMAKL----LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD-------QM 302
              K   +E+ K     LF   P+ T          Y +      AARL+D       +M
Sbjct: 500 ACKKHRHVELGKYAAQQLFSIDPSNT--------GHYVQLSNLYAAARLWDRVAEVRVRM 551

Query: 303 EEAGLKPDDG 312
           +E GL  D G
Sbjct: 552 KEKGLNKDVG 561


>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
 gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
          Length = 594

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/580 (34%), Positives = 324/580 (55%), Gaps = 38/580 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDP-D 79
           L  CKN     QL   +IK  L ++ Y   +L+ S A    +G    A K+F+ +  P +
Sbjct: 38  LQNCKNPKDLIQLHTLLIKTSLIKEKYAFGRLLLSFASFDNLGSLNYAQKLFDTVDIPRN 97

Query: 80  VHLYNTLIRACVQ--NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
             +Y T+I+A     N   A AF   +   ++ V+ ++FT+ ++  AC+  N     +  
Sbjct: 98  SFMYTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFTYVFSACSKFNGVFEGKQA 157

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           HA + K  +   +   NSL+D Y K G VG+ +                           
Sbjct: 158 HAQMIKFPFEFGVHSWNSLLDFYGKVGEVGIVV--------------------------- 190

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                RR+FD++   D VSWN +++GY K+G+++ A  LF+++P R++VSW+ M+ GY+ 
Sbjct: 191 -----RRVFDKIEGPDVVSWNCLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYAD 245

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +  A  LFD MP + LV W+ +I GY + G   +A  L+ +M+ A +K D+  + ++
Sbjct: 246 AGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAKVKMDEVIVTTL 305

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L+ACA  G L  G  +H  I+K+  K + ++  AL+DMY+KCG +D A  VF     K +
Sbjct: 306 LSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKVFQETGDKKV 365

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
             W++M+ GLAMH  GEKA+ LF++M + G  P + T++ +L ACTH+G +D G+Q F  
Sbjct: 366 FVWSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGLQIFNR 425

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M  +    P+++HYGC++DLLGR+G L +A R+V++MPV+ +  IW  LL AC+ H  VE
Sbjct: 426 MVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVKADPAIWRALLSACKLHRNVE 485

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L E+V   LI+++  +  NY + SN++AA   W+    +R +MK    QK  G SS+E++
Sbjct: 486 LGEQVGRILIKMEPQNDMNYVLFSNVYAAVNRWDISGKLRREMKVRGMQKNPGCSSIELN 545

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             VHEF   D  HP+S+ IY++++ L   +    H   ++
Sbjct: 546 GAVHEFVSRDHSHPQSQVIYELLHILTNHMVQEDHEPMMT 585


>gi|449446173|ref|XP_004140846.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 488

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 184/478 (38%), Positives = 289/478 (60%), Gaps = 10/478 (2%)

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +IR    N    Q+  ++ D+ ++G+   +FTYPF+LK+C    WF   + +H  I K G
Sbjct: 1   MIRGYAFNGPAHQSVSLYGDLLQRGLKPHSFTYPFVLKSCADLGWFWDGKKVHCRILKTG 60

Query: 146 YFGDIFVPNSLIDSY--------SKCGVVGV-SLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +  +  V ++L   Y         K    G+ S A+K+F  M  R +  WN MI      
Sbjct: 61  FSLNSSVSDALFHLYVNFSKFTGPKDAADGMASDARKVFDEMCVRSVEVWNRMILRYTST 120

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G++S A++LF+ M +RD VSWNT++ GY K GE+  A ELFEK+P +N+VSW++M+  Y+
Sbjct: 121 GDVSGAQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVSWTSMISAYA 180

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K GD+  A++ F++MP + +V W  +IS Y + G  +EA  L++QM   G+ PD  T +S
Sbjct: 181 KAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVS 240

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           + +AC+  G L LG K+H +I+ +  +       AL++MYAKCG ++ A ++F  + KKD
Sbjct: 241 VFSACSHLGNLMLGTKIHYAIDDFS-QLGVIAATALIEMYAKCGDINRAFNLFIKIGKKD 299

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +  WN ML  LA+HGQ + AL LFS M+ +G  P+ +TF+G L AC+H G +++G   F 
Sbjct: 300 VFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFD 359

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            ME++Y I P++EH+GC++DLL R+GRL+EAL +V  MP E +  IWG LLG C+     
Sbjct: 360 MMEKEYKIRPRIEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDF 419

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
           + A E+++   +L+  + G +   SN++A+   W +  N R +M+     K +G SSV
Sbjct: 420 KRAGEIVERARKLRSKEGGIHVSFSNMYASVEQWAEAVNAREKMENENILKKTGQSSV 477



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 162/346 (46%), Gaps = 50/346 (14%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+FN ++D D   +NT+I   ++     +A  +F  M EK V +              
Sbjct: 126 AQKLFNTMEDRDTVSWNTMISGYIKVGEVMKARELFEKMPEKNVVS-------------- 171

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             W                        S+I +Y+K G   ++ A+  F  M +R++VSWN
Sbjct: 172 --W-----------------------TSMISAYAKAG--DLATARMFFNKMPQRNVVSWN 204

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL---FEKI 240
           SMI+  V+ G+  EA  LF++M       D  ++ ++    +  G + L  ++    +  
Sbjct: 205 SMISSYVQHGDFQEALDLFNQMLSEGITPDGYTFVSVFSACSHLGNLMLGTKIHYAIDDF 264

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
               +++ + ++  Y+K GD+  A  LF ++  K +  W +++   A  G A++A +L+ 
Sbjct: 265 SQLGVIAATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFS 324

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKC 359
            M++ GLKP+D T +  L AC+  G++  G  +   + K Y+ +        +VD+ ++ 
Sbjct: 325 LMQKQGLKPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIVDLLSRN 384

Query: 360 GSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           G L+ A+ V + M  + D+  W A+L G  + G  ++A  +  R +
Sbjct: 385 GRLEEALDVVDKMPFEADVAIWGALLGGCKLRGDFKRAGEIVERAR 430



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 15/258 (5%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS+ A    +  A   FN +   +V  +N++I + VQ+    +A  +F  M  +G+  D
Sbjct: 175 MISAYAKAGDLATARMFFNKMPQRNVVSWNSMISSYVQHGDFQEALDLFNQMLSEGITPD 234

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            +T+  +  AC+      L   IH  I      G +    +LI+ Y+KCG   ++ A  L
Sbjct: 235 GYTFVSVFSACSHLGNLMLGTKIHYAIDDFSQLG-VIAATALIEMYAKCG--DINRAFNL 291

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAG-- 228
           F+ +G++D+  WN M+  L   G+  +A +LF  M ++    +  ++   L   +  G  
Sbjct: 292 FIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGLKPNDFTFLGALFACSHGGMV 351

Query: 229 -EMNLAFELFE---KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-WTIII 283
            E    F++ E   KI  R I  +  +V   S++G +E A  + D+MP +  V  W  ++
Sbjct: 352 EEGQTIFDMMEKEYKIRPR-IEHFGCIVDLLSRNGRLEEALDVVDKMPFEADVAIWGALL 410

Query: 284 SGYAEKGMAKEAARLYDQ 301
            G   +G  K A  + ++
Sbjct: 411 GGCKLRGDFKRAGEIVER 428



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 47/196 (23%)

Query: 52  APKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV 111
           A  LI   A C  +  A  +F  I   DV  +N ++++   +     A ++F  MQ++G+
Sbjct: 272 ATALIEMYAKCGDINRAFNLFIKIGKKDVFFWNVMLKSLALHGQAQDALKLFSLMQKQGL 331

Query: 112 FTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
             ++FT+   L AC+       G+  F +++  + +  +  +FG I              
Sbjct: 332 KPNDFTFLGALFACSHGGMVEEGQTIFDMMEKEYKIRPRIEHFGCIV------------- 378

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILDG 223
                            D++S N         G L EA  + D+MP E D   W  +L G
Sbjct: 379 -----------------DLLSRN---------GRLEEALDVVDKMPFEADVAIWGALLGG 412

Query: 224 YAKAGEMNLAFELFEK 239
               G+   A E+ E+
Sbjct: 413 CKLRGDFKRAGEIVER 428


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 321/589 (54%), Gaps = 64/589 (10%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++ LA  +F  I  PD + YNTL+ A   +S  A A  +F +M  +    D+ TY  ++ 
Sbjct: 84  RLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVR----DSVTYNVMIS 139

Query: 124 --ACNG-----KNWFHLVQMIHALIYKC---------------GYFG-----DIFVPNSL 156
             A +G     +++F L     A+ +                 G F      D    N+L
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNAL 199

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE------------------ 198
           +  Y + G   +S A++LF  M  RD+VSWN M++G  + G+                  
Sbjct: 200 MSGYVQWG--KMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFT 257

Query: 199 -------------LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                        L EARR+FD MPER+AVSWN ++  Y +   M+ A ELF  +P RN+
Sbjct: 258 WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNV 317

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            SW+TM+ GY++ G +E AK +FD MP K  V W  +++ Y++ G ++E  +L+ +M   
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G   +      +L+ CA+   L  GM++H  + +  +     V NAL+ MY KCG++++A
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            + F  M ++D+VSWN M+ G A HG G++AL +F  M+     PD  T VGVL AC+H+
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G ++KG+ YFYSM  D+G+  + EHY CMIDLLGR+GRL EA  L++ MP EP++ +WG 
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGA R H   EL     + +  L+  + G Y +LSNI+A++G W     +R+ M++   
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           +K  G S +EV N+VH FS  D +HP+ E+IY  +  L   +K  G+ +
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVS 666



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 204/443 (46%), Gaps = 89/443 (20%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           N+++  YS  G +   LA  LF ++   D  S+N+++  L     L++AR LFDEMP   
Sbjct: 73  NAMLAGYSANGRL--PLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRD 130

Query: 211 ----------------------------ERDAVSWNTILDGYAKAG-------------- 228
                                       E+DAVSWN +L  Y + G              
Sbjct: 131 SVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE 190

Query: 229 -----------------EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
                            +M+ A ELF+++P R++VSW+ MV GY++ GDM  A+ LFD  
Sbjct: 191 WDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAA 250

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P + +  WT ++SGYA+ GM +EA R++D M E     +  +  +++AA  +  ++    
Sbjct: 251 PVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAK 306

Query: 332 KVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
           ++   +      C N    N ++  YA+ G L+ A +VF+ M +KD VSW AML   +  
Sbjct: 307 ELFNMM-----PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQG 361

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER-DYGILPQVE 449
           G  E+ L LF  M   G   ++  F  VL  C     ++ G+Q    + R  YG+     
Sbjct: 362 GCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV----- 416

Query: 450 HYGC-----MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
             GC     ++ +  + G +++A    + M  E + + W T++    +H   + A E+ D
Sbjct: 417 --GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFD 473

Query: 505 CLIRLKGSDPGNYTMLSNIFAAT 527
            ++R   + P + T++  + A +
Sbjct: 474 -MMRTTSTKPDDITLVGVLAACS 495



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 169/406 (41%), Gaps = 86/406 (21%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +++ ++LF ++      RD      ++S  A    M  A ++F+     DV  +  ++  
Sbjct: 209 MSEARELFDRMPG----RDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSG 264

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN +  +A RVF  M E+                N  +W  +V               
Sbjct: 265 YAQNGMLEEARRVFDAMPER----------------NAVSWNAMVA-------------- 294

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            ++   ++D            AK+LF  M  R++ SWN+M+ G  + G L EA+ +FD M
Sbjct: 295 AYIQRRMMDE-----------AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIP---------------------------- 241
           P++DAVSW  +L  Y++ G      +LF ++                             
Sbjct: 344 PQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGM 403

Query: 242 --HRNIVS---------WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
             H  ++           + ++  Y K G+ME A+  F+ M  + +V W  +I+GYA  G
Sbjct: 404 QLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHG 463

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVC 349
             KEA  ++D M     KPDD TL+ +LAAC+ SGL+  G+    S++  +         
Sbjct: 464 FGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHY 523

Query: 350 NALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
             ++D+  + G L  A  +   M  + D   W A+L    +H   E
Sbjct: 524 TCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPE 569



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 18/327 (5%)

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
           E +++  N  I   ++ G +++A RLF  MP R   ++N +L GY+  G + LA  LF  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           IP  +  S++T++   +    +  A+ LFD MP +  V + ++IS +A  G+   A   +
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF 154

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           D   E     D  +   +LAA   +G +     +  S    R + +    NAL+  Y + 
Sbjct: 155 DLAPE----KDAVSWNGMLAAYVRNGRVEEARGLFNS----RTEWDAISWNALMSGYVQW 206

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G +  A  +F+ M  +D+VSWN M+ G A  G   +A  LF    D     D +T+  V+
Sbjct: 207 GKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLF----DAAPVRDVFTWTAVV 262

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
                 G +++  + F +M     +      +  M+    +   + EA  L   MP   N
Sbjct: 263 SGYAQNGMLEEARRVFDAMPERNAV-----SWNAMVAAYIQRRMMDEAKELFNMMPCR-N 316

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCL 506
              W T+L    +   +E A+ V D +
Sbjct: 317 VASWNTMLTGYAQAGMLEEAKAVFDTM 343


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/635 (33%), Positives = 343/635 (54%), Gaps = 48/635 (7%)

Query: 1   MSAPIRAPTWFSKRRLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
           +S   +   W +    + E   L  L +CK+L Q KQ+ AQ++   L  + + A +L++ 
Sbjct: 39  LSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAF 98

Query: 59  LALC--RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DN 115
            AL   +++    ++   I++ +V  +N  IR  V++      F ++  M   G    DN
Sbjct: 99  CALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDN 158

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
            TYP LLK C G+    L   +   + K G+  DIFV N+ I     CG   +S+A  +F
Sbjct: 159 HTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCG--ELSVAYDVF 216

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI--------------- 220
                RD+V+WNSMI G VK G   EA +++ EM E + V  N I               
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEITMIGMISSCSQVQDL 275

Query: 221 -------------------------LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                                    +D Y K GE+  A  LF+ +  + +VSW+TMV GY
Sbjct: 276 NLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGY 335

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           ++ G +++A+ +  ++P K++VPW  IISG  +    KEA  L+ +M+   ++PD  T++
Sbjct: 336 ARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMV 395

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           + L+AC++ G L +G+ +H  I +++   +  +  ALVDMYAKCG++  A+ VF  + ++
Sbjct: 396 NCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQR 455

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           + ++W A++ GLA+HG  + AL  FS+M   G  PD+ TF+GVL AC H G +++G +YF
Sbjct: 456 NCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYF 515

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   + + P+++HY CM+DLLGR+G L+EA  LV++MP+  +A + G L  ACR +  
Sbjct: 516 SEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGN 575

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           V++ E     L+ +   D GNY +L+++++    W +  + R  M     +K  G S VE
Sbjct: 576 VQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           ++  VHEF V D  HP+SE IY+ + TL K L  +
Sbjct: 636 INGIVHEFVVRDVSHPQSEWIYECLVTLTKQLDVI 670


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/548 (35%), Positives = 311/548 (56%), Gaps = 10/548 (1%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      +ISS A    + LA   F+   + D   +N ++ A V+N    +A  +F   
Sbjct: 4   RDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSR 63

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
            E  V + N      ++      W  + +         G   D+   N ++  Y++ G  
Sbjct: 64  TEWDVISWNALMSGYVQ------WGKMSEARELFDRMPGR--DVVSWNIMVSGYARRG-- 113

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
            +  A++LF +   RD+ +W ++++G  + G L EARR+FD MPER+AVSWN ++  Y +
Sbjct: 114 DMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQ 173

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
              M+ A ELF  +P RN+ SW+TM+ GY++ G +E AK +FD MP K  V W  +++ Y
Sbjct: 174 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAY 233

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           ++ G ++E  +L+ +M   G   +      +L+ CA+   L  GM++H  + +  +    
Sbjct: 234 SQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGC 293

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
            V NAL+ MY KCG++++A + F  M ++D+VSWN M+ G A HG G++AL +F  M+  
Sbjct: 294 FVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTT 353

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
              PD  T VGVL AC+H+G ++KG+ YFYSM  D+G+  + EHY CMIDLLGR+GRL E
Sbjct: 354 STKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAE 413

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A  L++ MP EP++ +WG LLGA R H   EL     + +  L+  + G Y +LSNI+A+
Sbjct: 414 AHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYAS 473

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
           +G W     +R+ M++   +K  G S +EV N+VH FS  D +HP+ E+IY  +  L   
Sbjct: 474 SGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMR 533

Query: 587 LKPVGHAA 594
           +K  G+ +
Sbjct: 534 MKKAGYVS 541



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 190/388 (48%), Gaps = 56/388 (14%)

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV---------------------- 215
           M  RD V++N MI+     G +S AR  FD  PE+DAV                      
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 216 ---------SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
                    SWN ++ GY + G+M+ A ELF+++P R++VSW+ MV GY++ GDM  A+ 
Sbjct: 61  NSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARR 120

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           LFD  P + +  WT ++SGYA+ GM +EA R++D M E     +  +  +++AA  +  +
Sbjct: 121 LFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQRRM 176

Query: 327 LGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
           +    ++   +      C N    N ++  YA+ G L+ A +VF+ M +KD VSW AML 
Sbjct: 177 MDEAKELFNMM-----PCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLA 231

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER-DYGI 444
             +  G  E+ L LF  M   G   ++  F  VL  C     ++ G+Q    + R  YG+
Sbjct: 232 AYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV 291

Query: 445 LPQVEHYGC-----MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
                  GC     ++ +  + G +++A    + M  E + + W T++    +H   + A
Sbjct: 292 -------GCFVGNALLAMYFKCGNMEDARNAFEEME-ERDVVSWNTMIAGYARHGFGKEA 343

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            E+ D ++R   + P + T++  + A +
Sbjct: 344 LEIFD-MMRTTSTKPDDITLVGVLAACS 370


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/540 (36%), Positives = 303/540 (56%), Gaps = 43/540 (7%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +C++L Q KQ+ A ++      DP    +LI  SS+ +      A  VF+ I  PD  +Y
Sbjct: 17  RCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFDRIPHPDRFMY 76

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEK------GVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           NTLIR    +     A  ++  M         GV  D  T+PF+L+AC           +
Sbjct: 77  NTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAAMGASETGAQV 136

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           HA + K G   D FV N+LI  ++ CG +G + A                          
Sbjct: 137 HAHVVKAGCESDAFVRNALIGMHATCGDLGAAAA-------------------------- 170

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                  LFD     DAV+W+ ++ G+A+ G++  A ELF++ P +++VSW+ M+  Y+K
Sbjct: 171 -------LFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAK 223

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GDM  A+ LFD  P + +V W  +ISGY   G  K+A  L++QM+  G KPD  T++S+
Sbjct: 224 LGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSL 283

Query: 318 LAACAESGLLGLGMKVHASINKY--RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           L+ACA+SG +  G ++H  ++    R   +T + NAL+DMYAKCGS+ +A+ VF  M  K
Sbjct: 284 LSACADSGDMDAGRRLHRFLSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDK 343

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           ++ +WN+++ GLA+HG   +A+ +F +M      PD+ TFV VL AC+H G +DKG +YF
Sbjct: 344 NVSTWNSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYF 403

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M++ Y I P V+HYGCM+D+L R+G LKEA   + +M +EPN +IW TLLGACR H  
Sbjct: 404 NLMQQRYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGE 463

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +ELAE     L++ +    G++ +LSNI+A+ G+W    N+R  M  +   K +G + V+
Sbjct: 464 LELAEHANQELLKARSDASGDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/645 (33%), Positives = 340/645 (52%), Gaps = 84/645 (13%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV-FNDIQDPDVHLYN 84
           +  N N  +QL AQII   L    Y    LI+     R       + FN   +P+V ++ 
Sbjct: 10  RVGNFNHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFT 69

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK-ACNGKNWFHLVQMIHALIYK 143
           +++R       +A+   ++  MQ  GV  D F YP L+K A  G   FH      A + K
Sbjct: 70  SMLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFH------AHVLK 123

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSL-------------------------------AK 172
            G+  D FV N++ID Y++ G +G +                                A+
Sbjct: 124 LGHGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQ 183

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
            LF  M ER++++W +M+ G  K  +L  ARR FD MPER  VSWN +L GYA+ G    
Sbjct: 184 WLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEE 243

Query: 233 AFELFEKIPHRNI----VSWSTMVWG---------------------------------- 254
           A  LF+++ +  I     +W T++                                    
Sbjct: 244 ALRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLD 303

Query: 255 -YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDG 312
            Y+K GD++ A+ LF+ MP + +V W  +I+GYA+ G +  A  L+ +M  A  L PD+ 
Sbjct: 304 MYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEV 363

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T++S+++AC   G L LG  V   + + + K + +  NA++ MY++CGS+++A  VF  M
Sbjct: 364 TMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEM 423

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             +D+VS+N ++ G A HG G +A+ L S MK+ G  PD+ TF+GVL AC+HAG +++G 
Sbjct: 424 ATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGR 483

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           + F S++      P ++HY CM+DLLGR G L++A R ++ MP+EP+A ++G+LL A R 
Sbjct: 484 KVFESIKD-----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRI 538

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VEL E   + L  L+  + GN+ +LSNI+A+ G W  V  +R  MKK   +K +G S
Sbjct: 539 HKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWS 598

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            VE   ++H+F V D+ H +S+ IYQ++  L K ++  G+ A  S
Sbjct: 599 WVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKS 643


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 331/613 (53%), Gaps = 42/613 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-PD 79
           L+ L  CK+LN  KQL A I++  +          +S  +    +  A+ +F+ I   P+
Sbjct: 19  LEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPE 78

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             ++N+L+R   ++         +  ++  G   D  ++P +LKA +  +       +H 
Sbjct: 79  SIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGMELHG 138

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
             +K     D FV   L+D Y+ CG   ++ A+ +F  M +RD+V+WN+MI    + G L
Sbjct: 139 FAFKIATLSDPFVETGLMDMYAACG--RINYARNVFDEMSQRDVVTWNTMIERYCRFGLL 196

Query: 200 SEARRLFDEMPERDAVSWNTIL-------------------------------------- 221
            EA +LF+EM + + +    IL                                      
Sbjct: 197 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLTAL 256

Query: 222 -DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
              YA AG M++A E F K+  RN+   + MV GYSK G ++ A+++FD+   K LV WT
Sbjct: 257 VTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWT 316

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +IS YAE    +EA R++++M  +G+KPD  T++S+++AC   G L     VH   +  
Sbjct: 317 TMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLN 376

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             +    + NAL++MYAKCG LD A  VF  M  +++VSW++M+   AMHG+   +L LF
Sbjct: 377 GLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLF 436

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           ++MK E   P++ TFVGVL  C+H+G +++G + F SM  +Y I P++EHYGCM+DL GR
Sbjct: 437 AQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGR 496

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +  L+EAL +++SMP+ PN +IWG+L+ ACR H  +EL E     +++L+    G   ++
Sbjct: 497 ANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALVLM 556

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SNI+A    W+ V  +R  M+K +  K  G S ++++ + HEF + D+ H +S +IY  +
Sbjct: 557 SNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYTKL 616

Query: 581 NTLGKDLKPVGHA 593
             +   LK  G+ 
Sbjct: 617 YEVVSKLKLAGYV 629


>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 474

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/418 (41%), Positives = 269/418 (64%), Gaps = 2/418 (0%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           ++ A K+F  M E+++V W SMI G +   +L  ARR FD  PERD V WNT++ GY + 
Sbjct: 44  IASANKVFCEMVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEM 103

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           G M  A  LF+++P R+++SW+T++ GY+  GDME  + +FD MP + +  W  +I GYA
Sbjct: 104 GNMLEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYA 163

Query: 288 EKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF-KCN 345
           + G   E    + +M +E  + P+D T+  +L+ACA+ G    G  VH       + K +
Sbjct: 164 QNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVD 223

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
            NV NAL+DMY KCG+++ AM VF G+ ++DL+SWN M+ GLA HG G +AL LF  MK+
Sbjct: 224 VNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKN 283

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
            G  PDK TFVGVLCAC H G ++ G+ YF SM  D+ I+P++EH GC++DLL R+G L 
Sbjct: 284 SGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLT 343

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           +A+  +  MPV+ +A+IW TLLGA + +  V++ E  L+ LI+L+  +P N+ MLSNI+ 
Sbjct: 344 QAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYG 403

Query: 526 ATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
             G ++  A +++ M+ T  +K +G S +E D+ + +F    + HP++E++ +++  L
Sbjct: 404 DAGRFDDAARLKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILREL 461



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 142/331 (42%), Gaps = 52/331 (15%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+ + + LF Q+      RD      ++   A    M    +VF+D+ + +V  +N LI+
Sbjct: 105 NMLEARSLFDQMP----CRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIK 160

Query: 89  ACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              QN   ++    F  M ++G V  ++ T   +L AC     F   + +H      GY 
Sbjct: 161 GYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYN 220

Query: 148 G-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D+ V N+LID Y KCG   + +A ++F  +  RD++SWN+MI GL   G  +EA  LF
Sbjct: 221 KVDVNVKNALIDMYGKCG--AIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLF 278

Query: 207 DEMPER----DAVSWNTIL----------DGYA--------------------------K 226
            EM       D V++  +L          DG A                          +
Sbjct: 279 HEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSR 338

Query: 227 AGEMNLAFELFEKIPHR-NIVSWSTMVWG---YSKDGDMEMAKLLFDRMPAKTLVPWTII 282
           AG +  A E   K+P + + V W+T++     Y K    E+A     ++  +    + ++
Sbjct: 339 AGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVML 398

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            + Y + G   +AARL   M + G K + G 
Sbjct: 399 SNIYGDAGRFDDAARLKVAMRDTGFKKEAGV 429


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 205/569 (36%), Positives = 315/569 (55%), Gaps = 47/569 (8%)

Query: 34  KQLFAQI-IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
           K+L ++I I  +L  +P +  KL+ + A C +      +F++I D +V  +N +IR+ V 
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN--GKNWFHLVQMIHALIYKCGYFGDI 150
           N L   A  VF  M  +G + DN+TYP +LKAC+  G  W  L   IH  + K G   ++
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGL--QIHGAVVKLGLDMNL 172

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           ++ N L+  Y KC                      W            L  ARR+ DEMP
Sbjct: 173 YIGNGLVSMYGKC---------------------KW------------LDAARRVLDEMP 199

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-------SWSTMVWGYSKDGDMEM 263
            RD VSWN+++ GYA+ G  N A +L  ++    +        S    V   S D ++  
Sbjct: 200 GRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCD-NVLY 258

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
            K +F ++  K+L+ W ++I+ Y    M  EA  LY QM+  G++PD  ++ S+L AC +
Sbjct: 259 VKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGD 318

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
                LG ++H  + + + + N  + NAL+DMYAKCG L  A +VF+ M  +D+VSW +M
Sbjct: 319 LSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSM 378

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           +    M GQG+ A+ LF +M+D GF PD   FV VL AC+HAG +D+G +Y +++  +YG
Sbjct: 379 ISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEG-RYCFNLMAEYG 437

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P +EHY CM+DLLGR+G++ EA  L + MP+EPN  +WG+LL ACR ++++ +A    
Sbjct: 438 ITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAA 497

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           D L +L     G Y +LSNI+A  G W  V  VR  M     +K  G S+VE+++ V+ F
Sbjct: 498 DHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTF 557

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
              DQ H +S++IY+ +  L   +K +G+
Sbjct: 558 LAGDQSHTQSKEIYKALGVLVGRMKELGY 586


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 335/584 (57%), Gaps = 19/584 (3%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q KQ+ A+++ L LQ   ++  KLI + +    +  A +VF+D+  P +  +N +IR   
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +N+    A  ++ +MQ   V  D+FT+P LLKAC+G +   + + +HA +++ G+  D+F
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           V N LI  Y+KC  +G   A+ +F  + + ER IVSW ++++   + GE  EA  +F +M
Sbjct: 156 VQNGLIALYAKCRRLGS--ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 210 PERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------VSWSTMVWGYSKD 258
            + D     V+  ++L+ +    ++     +   +    +       +S +TM   Y+K 
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM---YAKC 270

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +  AK+LFD+M +  L+ W  +ISGYA+ G A+EA  ++ +M    ++PD  ++ S +
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA+ G L     ++  + +  ++ +  + +AL+DM+AKCGS++ A  VF+    +D+V
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVV 390

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            W+AM+ G  +HG+  +A+ L+  M+  G  P+  TF+G+L AC H+G + +G  +F  M
Sbjct: 391 VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRM 450

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             D+ I PQ +HY C+IDLLGR+G L +A  +++ MPV+P   +WG LL AC+KH  VEL
Sbjct: 451 A-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVEL 509

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E     L  +  S+ G+Y  LSN++AA   W++VA VR++MK+    K  G S VEV  
Sbjct: 510 GEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
            +  F V D+ HP+ E+I + +  +   LK  G  A   A + +
Sbjct: 570 RLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHD 613



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 13/377 (3%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL--YNTL 86
           +L   + + AQ+ +L    D ++   LI+  A CR++G A  VF  +  P+  +  +  +
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           + A  QN    +A  +F  M++  V  D      +L A          + IHA + K G 
Sbjct: 194 VSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGL 253

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             +  +  SL   Y+KCG   V+ AK LF  M   +++ WN+MI+G  K G   EA  +F
Sbjct: 254 EIEPDLLISLNTMYAKCG--QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311

Query: 207 DEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKD 258
            EM  +    D +S  + +   A+ G +  A  ++E +       ++   S ++  ++K 
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +E A+L+FDR   + +V W+ +I GY   G A+EA  LY  ME  G+ P+D T + +L
Sbjct: 372 GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDL 377
            AC  SG++  G      +  ++          ++D+  + G LD A  V   M  +  +
Sbjct: 432 MACNHSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGV 491

Query: 378 VSWNAMLYGLAMHGQGE 394
             W A+L     H   E
Sbjct: 492 TVWGALLSACKKHRHVE 508



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 156/370 (42%), Gaps = 72/370 (19%)

Query: 4   PIRAPTWFSKRRLLEEK--------LQNLHKC-KNLNQTKQLFAQIIKLDLQRDPYIAPK 54
           P+ A   FS+ R ++ K        + N   C ++L Q + + A ++K+ L+ +P +   
Sbjct: 203 PMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L +  A C Q+  A  +F+ ++ P++ L+N +I    +N    +A  +F +M  K V  D
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             +    + AC         + ++  + +  Y  D+F+ ++LID ++KCG   V  A+ +
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCG--SVEGARLV 380

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN---------------- 218
           F    +RD+V W++MI G    G   EA  L+  M ER  V  N                
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM-ERGGVHPNDVTFLGLLMACNHSGM 439

Query: 219 ------------------------TILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVW 253
                                    ++D   +AG ++ A+E+ + +P    +  W  ++ 
Sbjct: 440 VREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 254 GYSKDGDMEM----AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD-------QM 302
              K   +E+    A+ LF   P+ T          Y +      AARL+D       +M
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNT--------GHYVQLSNLYAAARLWDRVAEVRVRM 551

Query: 303 EEAGLKPDDG 312
           +E GL  D G
Sbjct: 552 KEKGLNKDVG 561


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/584 (33%), Positives = 336/584 (57%), Gaps = 19/584 (3%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q KQ+ A+++ L LQ   ++  KLI + +    +  A +VF+D+  P +  +N +IR   
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +N+    A  ++ +MQ   V  D+FT+P LLKAC+G +   + + +HA +++ G+  D+F
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           V N LI  Y+KC  +G   A+ +F  + + ER IVSW ++++   + GE  EA  +F  M
Sbjct: 156 VQNGLIALYAKCRRLGS--ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM 213

Query: 210 PERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------VSWSTMVWGYSKD 258
            + D     V+  ++L+ +    ++     +   +    +       +S +TM   Y+K 
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTM---YAKC 270

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +  AK+LFD+M +  L+ W  +ISGYA+ G A+EA  ++ +M    ++PD  ++ S +
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAI 330

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA+ G L     ++  + +  ++ +  + +AL+DM+AKCGS++ A  VF+    +D+V
Sbjct: 331 SACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVV 390

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            W+AM+ G  +HG+  +A+ L+  M+  G  P+  TF+G+L AC H+G + +G  +F+++
Sbjct: 391 VWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREG-WWFFNL 449

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             D+ I PQ +HY C+IDLLGR+G L +A  +++ MPV+P   +WG LL AC+KH  VEL
Sbjct: 450 MADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVEL 509

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E     L  +  S+ G+Y  LSN++AA   W++VA VR++MK+    K  G S VEV  
Sbjct: 510 GEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRG 569

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
            +  F V D+ HP+ E+I + +  +   LK  G  A   A + +
Sbjct: 570 RLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHD 613



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 13/377 (3%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL--YNTL 86
           +L   + + AQ+ +L    D ++   LI+  A CR++G A  VF  +  P+  +  +  +
Sbjct: 134 HLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAI 193

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           + A  QN    +A  +F  M++  V  D      +L A          + IHA + K G 
Sbjct: 194 VSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGL 253

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             +  +  SL   Y+KCG   V+ AK LF  M   +++ WN+MI+G  K G   EA  +F
Sbjct: 254 EIEPDLLISLNTMYAKCG--QVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMF 311

Query: 207 DEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKD 258
            EM  +    D +S  + +   A+ G +  A  ++E +       ++   S ++  ++K 
Sbjct: 312 HEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKC 371

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +E A+L+FDR   + +V W+ +I GY   G A+EA  LY  ME  G+ P+D T + +L
Sbjct: 372 GSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLL 431

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDL 377
            AC  SG++  G      +  ++          ++D+  + G LD A  V   M  +  +
Sbjct: 432 MACNHSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGV 491

Query: 378 VSWNAMLYGLAMHGQGE 394
             W A+L     H   E
Sbjct: 492 TVWGALLSACKKHRHVE 508



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 155/370 (41%), Gaps = 72/370 (19%)

Query: 4   PIRAPTWFSKRRLLEEK--------LQNLHKC-KNLNQTKQLFAQIIKLDLQRDPYIAPK 54
           P+ A   FS  R ++ K        + N   C ++L Q + + A ++K+ L+ +P +   
Sbjct: 203 PMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLIS 262

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L +  A C Q+  A  +F+ ++ P++ L+N +I    +N    +A  +F +M  K V  D
Sbjct: 263 LNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPD 322

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             +    + AC         + ++  + +  Y  D+F+ ++LID ++KCG   V  A+ +
Sbjct: 323 TISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCG--SVEGARLV 380

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN---------------- 218
           F    +RD+V W++MI G    G   EA  L+  M ER  V  N                
Sbjct: 381 FDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAM-ERGGVHPNDVTFLGLLMACNHSGM 439

Query: 219 ------------------------TILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVW 253
                                    ++D   +AG ++ A+E+ + +P    +  W  ++ 
Sbjct: 440 VREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLS 499

Query: 254 GYSKDGDMEM----AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD-------QM 302
              K   +E+    A+ LF   P+ T          Y +      AARL+D       +M
Sbjct: 500 ACKKHRHVELGEYAAQQLFSIDPSNT--------GHYVQLSNLYAAARLWDRVAEVRVRM 551

Query: 303 EEAGLKPDDG 312
           +E GL  D G
Sbjct: 552 KEKGLNKDVG 561


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/607 (34%), Positives = 328/607 (54%), Gaps = 42/607 (6%)

Query: 5   IRAPTWFSKRRLLEEKL--QNLHKCKNLNQTKQLFAQI-IKLDLQRDPYIAPKLISSLAL 61
           I+ P +  +  +L E L  Q L K  ++   K+L ++I I  DL  +P +  KL+ + A+
Sbjct: 24  IQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAV 83

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           C +      +F++I   +V  +N +IR+ V N L + A  VF +M   G+  D++TYP +
Sbjct: 84  CGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCV 143

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           LKA +G     +   IHA + + G   ++FV N LI  Y KCG                 
Sbjct: 144 LKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC---------------- 187

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI- 240
                            L EA R+ D+MP RD VSWN+++ G A+ G+ + A E+ +++ 
Sbjct: 188 -----------------LVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEME 230

Query: 241 -----PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                P    ++        +   ++   K +F ++  K+LV W ++I+ Y    M  EA
Sbjct: 231 LLGLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEA 290

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             ++ QME+  + PD  ++ S+L AC +   L LG ++H  + + R + N  + NAL+DM
Sbjct: 291 VDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDM 350

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKCG L+ A  VF+ M  +D+VSW +M+    M+G+G  A+ LFSRM+D G  PD   F
Sbjct: 351 YAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAF 410

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           V VL AC+HAG +D+G  YF  M  +  I+P++EH+ CM+DLLGR+G++ EA   ++ MP
Sbjct: 411 VSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMP 470

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           +EPN  +WG LL ACR ++ + +     D L +L     G Y +LSNI+A  G W  V  
Sbjct: 471 MEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTT 530

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VR  MK    +K  G S+ E+DN VH F   DQ HP+S+QIY+ ++     +K  G+  +
Sbjct: 531 VRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPE 590

Query: 596 LSAEIGE 602
             + + +
Sbjct: 591 TDSALHD 597


>gi|345505224|gb|AEN99836.1| chlororespiratory reduction 4, partial [Lepidium virginicum]
          Length = 594

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/585 (34%), Positives = 317/585 (54%), Gaps = 48/585 (8%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA-----------IKVFNDI 75
           CK  +   ++ AQ+I     ++  +  +++ + A  R   LA           +  F   
Sbjct: 3   CKTSDDVNKIHAQLITTGFIKNTNLTTRIVLAFASSRHQHLAEFARCVFEEHYVYSFPYG 62

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           +  D  L+N ++++    +   +A  +F  M E GV  D F+   +LKAC+   +     
Sbjct: 63  ETEDPFLWNAVMKSHSHGTDPRRALLLFCLMLENGVSVDKFSSSLVLKACSRLGFVKGGM 122

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IH  + K G + D+F+ N LI  Y KCG +G   A+++F  M +RD VS+N    G VK
Sbjct: 123 QIHGFLRKTGLWSDLFLQNCLIALYLKCGCLG--FARQIFDRMPKRDSVSYNPXXEGXVK 180

Query: 196 GGELSEAR----------------------------------RLFDEMPERDAVSWNTIL 221
            G +  AR                                  +LF EMPE+D +SWN+I+
Sbjct: 181 CGLIESARELFXLXXXEXKNXXSXXCMXSGYAQTSDGLXIASKLFSEMPEKDLISWNSII 240

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           DGY K G    A +L++ +P R++++W+TM+ GY K G +  AK L D +P + +V +  
Sbjct: 241 DGYVKHGRXEDAKDLYDVMPRRDVITWATMIDGYVKLGFVHQAKTLLDXIPHRDVVAYNS 300

Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +++GY +     EA  L+  ME E+ L PD+ TL+ +L+A A+ G L   + ++  + K 
Sbjct: 301 MMAGYVQNKYHMEALELFGDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDMYLYVVKK 360

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
           +F     +  +L+DMY+KCGS+ +AM VF G+  K +  WNA++ GLA+HG+G  A  + 
Sbjct: 361 QFFLGGKLWVSLIDMYSKCGSIQHAMLVFEGLENKTIDHWNAIIGGLAIHGRGGPAFNML 420

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
            +++     PD  TF GVL AC+H+GF+ +G+  F  M R + I P+++HYGCM+D+L R
Sbjct: 421 LQIERSSIKPDDITFTGVLNACSHSGFVKEGLLCFELMRRKHKIEPRLQHYGCMVDILSR 480

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           SG ++ A  L++ MP+EPN +IW T L AC  H   E+ E V   LI     +P +Y +L
Sbjct: 481 SGSIELAKNLIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVAKHLILQADYNPSSYVLL 540

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           SN++A+ G W  V  VR  MK+ +  K  G SS+E+D  VHEF V
Sbjct: 541 SNMYASFGMWKDVRGVRTMMKERKIPKIPGCSSIELDGRVHEFFV 585


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 178/430 (41%), Positives = 270/430 (62%)

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
           GV  A   F  M  +DI SWN++I+G  + G++ +A  LF  MPE++ VSW+ ++ GY +
Sbjct: 151 GVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVE 210

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            G++  A EL++ +  +++V  + M+ GY K G +E+A+ +F RM  K LV W  +I+GY
Sbjct: 211 HGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGY 270

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
            E   A++  +++  M E+ ++P+  +L S+L  C+    L LG ++H  ++K     +T
Sbjct: 271 VENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDT 330

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
             C +L+ MY KCG LD+A  +F  M +KD++SWNAM+ G A HG G KAL LF +M++ 
Sbjct: 331 TACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNG 390

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
              PD  TFV V+ AC HAGF+D GVQYF SM++++GI  +  HY C+IDLLGR+GRL E
Sbjct: 391 TMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDE 450

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A+ L++ MP +P+A I+GTLLGACR H  ++LAE     L+ L  +    Y  L+NI+AA
Sbjct: 451 AVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAA 510

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
           T  W++VA VR  MK+    K  G S +E+ +  HEF   D+LHP+   I++ +N L   
Sbjct: 511 TNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGK 570

Query: 587 LKPVGHAAKL 596
           +K  G+   L
Sbjct: 571 MKLAGYVPDL 580



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/324 (28%), Positives = 158/324 (48%), Gaps = 11/324 (3%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKI 240
           D+VS N  IA  V+  +L  AR +F++M  R  V+WNT+L GY K AG++  A ELF+KI
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P  + VS++ M+  Y +   +E A   F++MP K +  W  +ISG+A+ G  ++A  L+ 
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
            M E     +  +  ++++   E G L    +++ ++        T    A++  Y K G
Sbjct: 192 VMPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET----AMLTGYMKFG 243

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            ++ A  +F  M  K+LV+WN+M+ G   + + E  L +F  M +    P+  +   VL 
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
            C++   +  G Q  + +     +         +I +  + G L  A +L   MP   + 
Sbjct: 304 GCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 481 IIWGTLLGACRKHNAVELAEEVLD 504
           I W  ++    +H A   A  + D
Sbjct: 362 ISWNAMISGYAQHGAGRKALHLFD 385



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 39/336 (11%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+  FN +   D+  +NTLI    QN    +AF +F  M EK                NG
Sbjct: 155 ALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----------------NG 198

Query: 128 KNWFHLVQ--MIHA------LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            +W  ++   + H        +YK      + V  +++  Y K G   V LA+++F  M 
Sbjct: 199 VSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFG--KVELAERIFQRMA 256

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLA-- 233
            +++V+WNSMIAG V+     +  ++F  M E     + +S +++L G +    + L   
Sbjct: 257 VKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ 316

Query: 234 -FELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
             +L  K P  ++  + ++++  Y K GD++ A  LF  MP K ++ W  +ISGYA+ G 
Sbjct: 317 MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGA 376

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCN 350
            ++A  L+D+M    +KPD  T ++++ AC  +G + LG++   S+ K +  +       
Sbjct: 377 GRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYT 436

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
            ++D+  + G LD A+S+   M  K     +A +YG
Sbjct: 437 CVIDLLGRAGRLDEAVSLIKEMPFKP----HAAIYG 468



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/220 (25%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++ LA ++F  +   ++  +N++I   V+N       +VF  M E  V  +  +   +L 
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
            C+  +   L + +H L+ K     D     SLI  Y KCG   +  A KLF+ M  +D+
Sbjct: 304 GCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCG--DLDSAWKLFLEMPRKDV 361

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEK 239
           +SWN+MI+G  + G   +A  LFD+M     + D +++  ++     AG ++L  + F+ 
Sbjct: 362 ISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKS 421

Query: 240 IPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +          V ++ ++    + G ++ A  L   MP K
Sbjct: 422 MKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFK 461



 Score = 39.7 bits (91), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 81/212 (38%), Gaps = 38/212 (17%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     +Q+   + K  L +D      LIS    C  +  A K+F ++   DV  +
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISW 364

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    Q+    +A  +F  M+   +  D  T+  ++ ACN           HA    
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN-----------HA---- 409

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEA 202
                        +D       +GV   K +    G E   V +  +I  L + G L EA
Sbjct: 410 -----------GFVD-------LGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEA 451

Query: 203 RRLFDEMPER-DAVSWNTILDGYAKAGEMNLA 233
             L  EMP +  A  + T+L        ++LA
Sbjct: 452 VSLIKEMPFKPHAAIYGTLLGACRIHKNLDLA 483


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 306/567 (53%), Gaps = 66/567 (11%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL--ALCRQMGLAIKVF 72
           RL   KL  L  C N    K + A +++  L  D + A +LI+    +    +  AI+V 
Sbjct: 15  RLKNPKLVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVA 74

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + IQ+P++ +YN LIR C  +     +F  ++     G+  DN T+PFL+KAC       
Sbjct: 75  SQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAP 134

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           +    H    K G+  D +V NSL+  Y+  G                            
Sbjct: 135 MGMQTHGQAIKHGFEQDFYVQNSLVHMYASVG---------------------------- 166

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
                +++ AR +F  M   D VSW  ++ GY + G+   A ELF+++P RN+V+WSTM+
Sbjct: 167 -----DINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMI 221

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            GY+++   E                               +A   ++ ++  G+  ++ 
Sbjct: 222 SGYARNNCFE-------------------------------KAVETFEALQAEGVVANET 250

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            ++ ++++CA  G L +G K H  + + +   N  +  A+VDMYA+CG+++ A+ VF  +
Sbjct: 251 VMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQL 310

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            +KD++ W A++ GLAMHG  EKAL  FS M  +GF P   TF  VL AC+HAG +++G+
Sbjct: 311 PEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGL 370

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           + F SM+RD+G+ P++EHYGCM+DLLGR+G+L++A + V  MPV+PNA IW  LLGACR 
Sbjct: 371 EIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRI 430

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VE+ E V   L+ ++    G+Y +LSNI+A    W  V  +R  MK    +KP G S
Sbjct: 431 HKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYS 490

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQM 579
            +E+D +VHEF++ D+ HP+ E+I ++
Sbjct: 491 LIEIDGKVHEFTIGDKTHPEIEKIERI 517


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 328/602 (54%), Gaps = 42/602 (6%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+   ++K+ L+ D +I   LI   A C  M    KVF  + + +V  + +LI    +  
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGD 211

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              +A  +F +M E G+   + T   ++ AC       + + + A I + G   +  + N
Sbjct: 212 RPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----P 210
           +L+D Y KCG   +  AK+LF    +R++V +N++++   + G   EA  + DEM    P
Sbjct: 272 ALVDMYMKCG--AIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGP 329

Query: 211 ERDAVS-------------------------------W----NTILDGYAKAGEMNLAFE 235
             D V+                               W    N I+D Y K G+  +A  
Sbjct: 330 RPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACR 389

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           +F+ + ++ +VSW+++  G+ ++GD+E A  +F+++P +  V W  +ISG  +K + ++A
Sbjct: 390 VFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDA 449

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             L+ +M+  G+K D  T++ I +AC   G   L   VH  I K    C+  +  ALVDM
Sbjct: 450 IELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDM 509

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           +A+CG   +AM VFN MT++D+ +W A +  +AM G GE A GLF++M  +G  PD   F
Sbjct: 510 FARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLF 569

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           V VL AC+H G +++G+  F  ME D+GI PQ+EHYGCM+DLLGR+G L+EA  L++SMP
Sbjct: 570 VQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMP 628

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           +EPN ++WG+LL ACR H  VE+A    + +  L     G + +LSNI+A+ G W  VA 
Sbjct: 629 MEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVAR 688

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VRL +++   +K  G+SSV+V+  +HEF+  D+ HP+   I  M+  +       GH   
Sbjct: 689 VRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPD 748

Query: 596 LS 597
           LS
Sbjct: 749 LS 750



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 147/515 (28%), Positives = 242/515 (46%), Gaps = 51/515 (9%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS---LALCRQMGLAIKVFN----D 74
           ++L  CK LNQ KQL  QI K  L + P    KL+++   +A    +  A K F     D
Sbjct: 30  ESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKED 89

Query: 75  IQDPD-VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           ++  D + + N+LIR      L  +A  +++ M   GV  +++T+PF+L  C     F  
Sbjct: 90  VRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE 149

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +H  + K G   D+F+ N LI  Y++CG   +    K+F  M ER++VSW S+I G 
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECG--HMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNI 245
            +G    EA  LF EM E      +V+   ++   AK  ++++   +   I       N 
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           V  + +V  Y K G ++ AK LFD    + LV +  I+S YA +G+A+EA  + D+M + 
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G +PD  T++S ++A A+   L  G   H  + +   +   ++ N ++DMY KCG  + A
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMA 387

Query: 366 MSVFNGMTKKDLVSWNA-------------------------------MLYGLAMHGQGE 394
             VF+ M+ K +VSWN+                               M+ GL      E
Sbjct: 388 CRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFE 447

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
            A+ LF  M+ EG   D+ T +G+  AC + G  +        +E++ GI   +     +
Sbjct: 448 DAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKN-GIPCDMRLNTAL 506

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +D+  R G  + A+++   M  E +   W   +G 
Sbjct: 507 VDMFARCGDPQSAMQVFNKM-TERDVSAWTAAIGT 540



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 125/246 (50%), Gaps = 3/246 (1%)

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GY+  G+ +EA  LY +M   G+ P+  T   +L+ C +      G++VH S+ K  
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            + +  + N L+  YA+CG +D+   VF GM+++++VSW +++ G A   + ++A+ LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M + G  P   T V V+ AC     +D G +   +   + G+         ++D+  + 
Sbjct: 222 EMVEAGIRPSSVTMVCVISACAKLRDLDMG-ERVCAYIGELGLKLNKVMVNALVDMYMKC 280

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G +  A RL     V+ N +++ T+L    +      A  +LD +++ +G  P   TMLS
Sbjct: 281 GAIDAAKRLFDEC-VDRNLVLYNTILSNYARQGLAREALAILDEMLQ-QGPRPDRVTMLS 338

Query: 522 NIFAAT 527
            I A+ 
Sbjct: 339 AISASA 344



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/238 (26%), Positives = 100/238 (42%), Gaps = 24/238 (10%)

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           Q++EA     D  L   L  C     L    ++H  I K       +    LV+  A+  
Sbjct: 15  QIKEADPMTKDSCLNESLRCCKTLNQLK---QLHCQITKNGLDQIPSTLTKLVNAGAEIA 71

Query: 361 S---LDNAMSVFNGMTKKDLVS------WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           S   LD A   F  + K+D+ S       N+++ G +  G G +A+ L+ RM   G  P+
Sbjct: 72  SPESLDYARKAFE-LFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPN 130

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
            YTF  VL  CT      +G+Q   S+ +  G+   V    C+I      G +    ++ 
Sbjct: 131 HYTFPFVLSGCTKIAAFCEGIQVHGSVVK-MGLEEDVFIQNCLIHFYAECGHMDHGHKVF 189

Query: 472 QSMPVEPNAIIWGTLLGAC----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           + M  E N + W +L+       R   AV L  E+++  IR     P + TM+  I A
Sbjct: 190 EGMS-ERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIR-----PSSVTMVCVISA 241


>gi|225430506|ref|XP_002283354.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 517

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 183/492 (37%), Positives = 289/492 (58%), Gaps = 3/492 (0%)

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           D  +  +N +I+  V      QA   +++M+  G   DNFT+P LLKA +  +   +   
Sbjct: 16  DSGLQRWNKVIKRRVSQGNPDQAILAYVEMKRVGFDADNFTFPVLLKAASSLSSCCIGFA 75

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H    K G+ G  FV  +L+D YS  G   +  A K+F  MG +D+V WNSM+A     
Sbjct: 76  LHGQAMKTGFSGHCFVGTALLDMYSAFG--AIDHATKVFEEMGVKDVVVWNSMLAAYASC 133

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G++  A +LFD MP +D  S+N ++ GYAK G+   A  +F++I  ++IVSW++M+   +
Sbjct: 134 GQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIFDRIHAKDIVSWNSMILACT 193

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             GDM  A+ LFD MP K ++ W  +ISGY    +  EA  L+D+M+    + D  T+  
Sbjct: 194 NVGDMGNARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTL 253

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L+ACA  G LG G ++H     +R   + +V  +L+DMYAKCG++  ++ VF     KD
Sbjct: 254 VLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKD 313

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +  WNA++ GLA+HG G  A+ L  +M+D G  PD+ TF+G+L AC+H   + +G + F 
Sbjct: 314 IYCWNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFD 373

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            ME+++G+ P++EHYGCM+DLLGR+G L  A +L+++MP EP   I G LLGAC  H  +
Sbjct: 374 CMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDL 433

Query: 497 ELAEEVLDCLI-RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           E  E+V++ +  +      G + M  N++A+ G W +    R +M ++   K +G S++E
Sbjct: 434 ETGEKVINLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIE 493

Query: 556 VDNEVHEFSVCD 567
           VD + + F   D
Sbjct: 494 VDGKFYRFLAGD 505



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 165/389 (42%), Gaps = 54/389 (13%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           +D  +   ++++ A C QM  A+K+F+++   D+  +N +I    +    A A  +F   
Sbjct: 118 KDVVVWNSMLAAYASCGQMDNAMKLFDNMPLKDLASFNIMISGYAKIGKKAAARSIF--- 174

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
                                         IHA         DI   NS+I + +  G +
Sbjct: 175 ----------------------------DRIHA--------KDIVSWNSMILACTNVGDM 198

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILD 222
           G   A+ LF  M ++++++WN+MI+G +     +EA  LFDEM     E D ++   +L 
Sbjct: 199 GN--ARNLFDVMPKKNVITWNTMISGYLHAQLYAEAVDLFDEMKAGNHEADHLTVTLVLS 256

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
             A  G +    E+        + S     ++++  Y+K G ++ +  +F +   K +  
Sbjct: 257 ACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYC 316

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  IISG A  G    A +L D+M + G++PD+ T I +L+AC+   L+  G ++   + 
Sbjct: 317 WNAIISGLALHGYGHAAVKLLDKMRDNGVRPDEITFIGLLSACSHRSLVQEGCRLFDCME 376

Query: 339 K-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ----G 393
           K +           +VD+  + G LD A  +   M  +   S    L G  +  Q    G
Sbjct: 377 KEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDLETG 436

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           EK + L +         +   FV +  +C
Sbjct: 437 EKVINLITSKAHHVSDGEFMMFVNLYASC 465



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 42/85 (49%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L   P++A  LI   A C  +  +++VF   Q  D++ +N +I     +     A ++  
Sbjct: 279 LASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLD 338

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKN 129
            M++ GV  D  T+  LL AC+ ++
Sbjct: 339 KMRDNGVRPDEITFIGLLSACSHRS 363


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 206/635 (32%), Positives = 344/635 (54%), Gaps = 55/635 (8%)

Query: 5   IRAPTWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           I++P  F+    ++ +L +++ KC  ++  ++LF ++    L+R+ +    +I +     
Sbjct: 46  IKSP--FASETFIQNRLIDVYGKCGCVDVARKLFDRM----LERNIFSWNSIICAFTKSG 99

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
            +  A+ +F  +   D   +N++I    Q+    +A   F  M   G   + +++   L 
Sbjct: 100 FLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALS 159

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC G     L   IH+L+Y+  Y  D+++ ++L+D YSKCG   V  A+ +F  M  R  
Sbjct: 160 ACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCG--RVEYAQSVFDEMTVRSR 217

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEM------PER------------------------- 212
           VSWNS+I    + G + EA ++F EM      P+                          
Sbjct: 218 VSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHAR 277

Query: 213 ---------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
                    D +  N +LD YAK   +N A  +F+ +P R++VS ++MV GY+K   +++
Sbjct: 278 VVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKV 337

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +F  M  K ++ W  +I+G  + G  +EA  L+  ++   + P   T  ++L ACA 
Sbjct: 338 ARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACAN 397

Query: 324 SGLLGLGMKVHASINKYRFK------CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
              L LG + H+ + K+ F+       +  V N+L+DMY KCGS++N   VF  M +KD 
Sbjct: 398 LADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDC 457

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSWNAM+ G A +G G KAL +F +M + G  PD  T +GVLCAC+HAG +D+G  YF S
Sbjct: 458 VSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRS 517

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M   +G++P  +HY CM+DLLGR+G L+EA  L++ M ++P+AI+WG+LL AC+ H  ++
Sbjct: 518 MTAQHGLMPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQ 577

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L E V+  L+ +   + G Y +LSN++A   DW  V  VR  M++    K  G S +E+ 
Sbjct: 578 LGEYVVKKLLEVDPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQ 637

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            E++ F V D+ H + ++IY ++ T+ + +K  G+
Sbjct: 638 GELNVFMVKDKRHARKKEIYMVLRTILQQMKQAGY 672



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 136/493 (27%), Positives = 224/493 (45%), Gaps = 80/493 (16%)

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
           +F D+  +  LL  C           +HA I K  +  + F+ N LID Y KCG V V  
Sbjct: 15  LFLDSSPFSKLLNQCARSRSARDTSRVHACIIKSPFASETFIQNRLIDVYGKCGCVDV-- 72

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A+KLF  M ER+I SWNS+I    K G L +A  +F++MP+ D  SWN+++ G+ + G  
Sbjct: 73  ARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRF 132

Query: 231 NLAFELFEKIPHR---------------------------------------NIVSWSTM 251
           + A   F ++                                          ++   S +
Sbjct: 133 DEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSAL 192

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  YSK G +E A+ +FD M  ++ V W  +I+ Y + G   EA +++ +M + G++PD+
Sbjct: 193 VDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252

Query: 312 GTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            TL S+++ACA    +  G ++HA + K   F+ +  + NAL+DMYAKC  ++ A  +F+
Sbjct: 253 VTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFD 312

Query: 371 -------------------------------GMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                                           M  KD+++WNA++ G   +G+ E+AL L
Sbjct: 313 MMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALIL 372

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-----YSMERDYGILPQVEHYGCM 454
           F  +K E   P  YTF  +L AC +   +  G Q       +     YG    V     +
Sbjct: 373 FRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSL 432

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           ID+  + G ++   R+ Q M +E + + W  ++    ++     A EV  C +   G  P
Sbjct: 433 IDMYMKCGSVENGCRVFQHM-LEKDCVSWNAMIVGYAQNGFGNKALEVF-CKMLESGEAP 490

Query: 515 GNYTMLSNIFAAT 527
            + TM+  + A +
Sbjct: 491 DHVTMIGVLCACS 503


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  370 bits (949), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 303/547 (55%), Gaps = 37/547 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL---CRQMGLAIKVFNDIQD 77
           L    + K+L + +Q  A ++K  L  D + A KL++  A     + +  A  + N I+ 
Sbjct: 13  LSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIES 72

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P+   +N++IRA   +S    A  VF +M    VF D +++ F+LKAC     F   + I
Sbjct: 73  PNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQI 132

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H L  K     D+FV N+LI+ Y + G   +                             
Sbjct: 133 HGLFMKSDLVTDVFVENTLINVYGRSGYFEI----------------------------- 163

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
               AR++ D MP RDAVSWN++L  Y   G +  A  LF+++  RN+ SW+ M+ GY+ 
Sbjct: 164 ----ARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAA 219

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLIS 316
            G ++ A+ +FD MP K +V W  +++ YA  G   E   +++ M +++  +PD  TL++
Sbjct: 220 AGLVKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVN 279

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L+ACA  G L  G  VH  I+K+  +    V  ALVDMY+KCG +D A+ VF   +K+D
Sbjct: 280 VLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRD 339

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           + +WN+++ GL++HG G+ AL +FS M  EGF P+  TF+GVL AC H G +D+  + F 
Sbjct: 340 VSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFE 399

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M   YGI P +EHYGCM+DLLGR G+ +EA  LV  +P +  +I+  +LLGAC++   +
Sbjct: 400 MMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKL 459

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           E AE + + L+     +   Y  +SN++A+ G W++   VR +M+  R +K  G S +EV
Sbjct: 460 EQAERIANRLLESNPRESSGYVQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIEV 519

Query: 557 DNEVHEF 563
           D  VHEF
Sbjct: 520 DGVVHEF 526


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 322/577 (55%), Gaps = 37/577 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +H   + ++ +Q+  Q+ + ++     +  + ISS +    +  AI +F   +  + +L+
Sbjct: 49  IHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLF 108

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N LIR   +NS    +   F+ M +  +  D  T+PF+LK+    +   + + +H  I K
Sbjct: 109 NALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILK 168

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D FV  SL+D Y                                 VK  EL  A 
Sbjct: 169 FGLEFDSFVRVSLVDMY---------------------------------VKVEELGSAL 195

Query: 204 RLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
           ++FDE PE       + WN ++ GY + G++  A ELF+ +P ++  SW++++ G+ K G
Sbjct: 196 KVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMPKKDTGSWNSLINGFMKMG 255

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           DM  AK LF +MP K +V WT +++G+++ G  ++A   +  M E G +P+D T++S L+
Sbjct: 256 DMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPNDYTIVSALS 315

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA+ G L  G+++H  ++   FK N  +  ALVDMYAKCG++++A  VF+   +K L+ 
Sbjct: 316 ACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLI 375

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W+ M++G A+HG   KAL  F  MK  G  PD   F+ VL AC+H+G +++G+++F +M 
Sbjct: 376 WSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMR 435

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           R Y I P ++HY  ++D+LGR+GRL EAL+ +++MP+ P+ ++WG L  ACR H  VE+A
Sbjct: 436 RGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCACRTHKNVEMA 495

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E     L++L+   PG+Y  LSN +A+ G W+    VR+ M+   A K  G S +EVD++
Sbjct: 496 ELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHK 555

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           +H F   D  H ++ +IY  ++ +    +  G+  ++
Sbjct: 556 LHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEI 592


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 207/587 (35%), Positives = 334/587 (56%), Gaps = 33/587 (5%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
            ++HK ++LNQ   + AQ++   L    ++  K +++     ++G A KVF++  +P V 
Sbjct: 80  HSVHK-RHLNQ---IHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF 135

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           L+N +IR    ++    A  ++  MQ  GV  D FT P +LKAC+G     + + +H  I
Sbjct: 136 LWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQI 195

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           ++ G+  D+FV N L+  Y+KCG   V  A+ +F  + +R+IVSW SMI+G  + G   E
Sbjct: 196 FRLGFESDVFVQNGLVALYAKCG--RVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPME 253

Query: 202 ARRLFDEMPER----DAVSWNTILDGYAKAGE-------------MNLAFELFEKIPHRN 244
           A R+F +M +R    D ++  ++L  Y    +             M L FE     P   
Sbjct: 254 ALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFE-----PDL- 307

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           ++S + M   Y+K G + +A+  FD+M    ++ W  +ISGYA+ G   EA  L+ +M  
Sbjct: 308 LISLTAM---YAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMIS 364

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
             ++ D  T+ S + ACA+ G L L   +   INK  ++ +  V  AL+DM+AKCGS+D 
Sbjct: 365 KNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDL 424

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  VF+    KD+V W+AM+ G  +HG+G+ A+ LF  MK  G  P+  TFVG+L AC H
Sbjct: 425 AREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNH 484

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           +G +++G + F+SM + YGI  + +HY C++DLLGRSG L EA   + +MP+EP   +WG
Sbjct: 485 SGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWG 543

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LLGAC+ +  V L E   + L  L   + G+Y  LSN++A++  W+ VA VR+ M++  
Sbjct: 544 ALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKG 603

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
             K  G S +E++ ++  F V D+ HP+ ++I++ + +L + LK  G
Sbjct: 604 LSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAG 650


>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 548

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/543 (35%), Positives = 315/543 (58%), Gaps = 43/543 (7%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHL 82
             CKN     Q+ A ++   L  +  +  +LI  +SL++   +  A K+F +I  PDV +
Sbjct: 20  QNCKNFRTLMQIHAFMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFEEIPKPDVSI 79

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
            N ++R   Q+    +   ++ +M+++GV  D +T+ F+LKAC+   W      IH  + 
Sbjct: 80  CNHVLRGSAQSLKPEKTVALYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAIHGKVV 139

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G+  + +V N+LI  ++ CG +G+                                 A
Sbjct: 140 RHGFLLNEYVKNALILFHANCGDLGI---------------------------------A 166

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
             LFD+  +   V+W+++  GYAK G+++ A  LF+++P ++ V+W+ M+ G  K  +M+
Sbjct: 167 SELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMD 226

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ LFDR   K +V W  +ISGY   G  KEA  ++ +M +AG  PD  T++S+L+ACA
Sbjct: 227 SARELFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEHPDVVTILSLLSACA 286

Query: 323 ESGLLGLGMKVH------ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
             G L  G ++H      AS++   +   T + NAL+DMYAKCGS+D A+ VF GM  +D
Sbjct: 287 VLGDLETGKRLHIYILETASVSSSIY-VGTPIWNALIDMYAKCGSIDRAIEVFRGMKDRD 345

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L +WN ++ GLA+H   E ++ +F  M+     P++ TF+GV+ AC+H+G +D+G +YF 
Sbjct: 346 LSTWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFS 404

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M   Y I P ++HYGCM+D+LGR+G L+EA   V+SM +EPNAI+W TLLGAC+ +  V
Sbjct: 405 LMRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIEPNAIVWRTLLGACKIYGNV 464

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           EL +   + L+ ++  + G+Y +LSNI+A+TG W+ V  VR     TR +KP+G S +E 
Sbjct: 465 ELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQKVRKMFDDTRVKKPTGISLIEE 524

Query: 557 DNE 559
           D++
Sbjct: 525 DDD 527


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/457 (40%), Positives = 278/457 (60%), Gaps = 34/457 (7%)

Query: 137 IHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           +HA   K G+   D+FV  +L+++Y+K G     LA+  F     RD+   N M+A  V 
Sbjct: 61  LHARALKSGFAAADLFVRTALVEAYAKAG--RADLARAAFDEAPRRDVFLCNVMLAAYVT 118

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            GE++EARR+FD M ERD VSWNT++ GYA  GE++LA E+F  +  R+  SWS+M    
Sbjct: 119 RGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSM---- 174

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
                                      +S Y +   +K+A  L+ +M  A + PD  T++
Sbjct: 175 ---------------------------MSAYTKGRRSKDALELWREMRAACVNPDCTTMV 207

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+L+AC++ G L +G +VH  +     + +  +  AL+DMYAKCG ++N++ VF+ M  K
Sbjct: 208 SVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVK 267

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+++W++M+ GLA HG G  AL LFSRM  EG  P++ TF+GVL +CTH G +  G +YF
Sbjct: 268 DVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYF 327

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            SM   +G+ P+V+HYGCM+DLLGRSG ++EA +L++ MP EP+A+IW  LLGACR +  
Sbjct: 328 SSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKN 387

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           VE+AEE +  L  L     G+Y +LSNI+A    W  VA +R  +++ R Q+  G SS+E
Sbjct: 388 VEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIE 447

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             N +HEF   D+ HP+S++IY+M+  +   L+  G+
Sbjct: 448 WQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGY 484



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 122/271 (45%), Gaps = 30/271 (11%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      +I   A+  ++ LA +VFN + D D   +++++ A  +   +  A  ++ +
Sbjct: 134 ERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWRE 193

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+   V  D  T   +L AC+      +   +H  +   G   D+ +  +LID Y+KCG 
Sbjct: 194 MRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGD 253

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG----ELSEARRLFDEMPERDAVSWNTIL 221
           +  S+  ++F SM  +D+++W+SMI GL   G     LS   R+  E  + + V++  +L
Sbjct: 254 IENSV--RVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVL 311

Query: 222 ----------DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
                     DG      M++   +  K+ H     +  MV    + G +E AK L   M
Sbjct: 312 ISCTHLGLVSDGKKYFSSMSVVHGVTPKVQH-----YGCMVDLLGRSGHIEEAKQLIRDM 366

Query: 272 PAK-TLVPWTIIISG--------YAEKGMAK 293
           P +   V W  ++           AE+ MAK
Sbjct: 367 PFEPDAVIWRALLGACRIYKNVEVAEEAMAK 397



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 120/298 (40%), Gaps = 66/298 (22%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           ++ D  +   LI   A C  +  +++VF+ +   DV  ++++I     +     A  +F 
Sbjct: 234 VELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFS 293

Query: 105 DMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
            M  +G+  +  T+  +L +C       +GK +F  + ++H +  K  ++G         
Sbjct: 294 RMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYG--------- 344

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDAVS 216
                                          M+  L + G + EA++L  +MP E DAV 
Sbjct: 345 ------------------------------CMVDLLGRSGHIEEAKQLIRDMPFEPDAVI 374

Query: 217 WNTILDGYAKAGEMNLAFELFEKI----PHRN---IVSWSTMVWGYSKDGDMEMAKLL-- 267
           W  +L        + +A E   K+    PH +   ++  +      S +G  EM + L  
Sbjct: 375 WRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRR 434

Query: 268 --FDRMPAKTLVPW--TI--IISGYAEKGMAKEAARLY----DQMEEAGLKPDDGTLI 315
               R+P ++ + W  TI   ISG      +KE  ++     D++ +AG KP  G ++
Sbjct: 435 ERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVL 492


>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g29230-like [Glycine max]
          Length = 446

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 180/438 (41%), Positives = 278/438 (63%), Gaps = 1/438 (0%)

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           YS  G V V+ A K+F  M ++++ +W +++A  V   ++  ARRLFD  P+ D V WN 
Sbjct: 2   YSLRGGVFVADAYKVFAEMRDKNVFAWTAVVAAHVACHDMVSARRLFDLAPQCDVVLWNV 61

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           I+ GY + G+M  A ELF+++P  +++SW+T++ GY+ +G++E+   +F+ MPA+ +  W
Sbjct: 62  IVSGYIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSW 121

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLK-PDDGTLISILAACAESGLLGLGMKVHASIN 338
             +I GY   G+ KEA   + +M   G+  P+D T++++L+AC+  G L +G  VH   +
Sbjct: 122 NGLIGGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYAD 181

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
              +K N  V NAL+DMYAKCG ++ A+ VF+G+  KD+++WN ++  LAMH     AL 
Sbjct: 182 SIGYKGNLFVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALS 241

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           LF  MK  G  PD  TFVG+L ACTH G +  G  +F SM  DY I+PQ+EHYGCM+DLL
Sbjct: 242 LFEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLL 301

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           GR+G + +A+ +V+ MP+EP+ +IW  LLGACR +  VE+AE  L  LI L+ ++PGN+ 
Sbjct: 302 GRAGLINQAVDIVRKMPMEPDVVIWAALLGACRXYKNVEMAELALQRLIELEPNNPGNFV 361

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           MLSNI+   G    VA +++ M+ T  +K  G S +  ++ V EF   D+ HP+++ IY+
Sbjct: 362 MLSNIYKDLGRSQDVARLKVAMRDTGFRKVPGCSVIGCNDSVVEFYSLDERHPETDSIYR 421

Query: 579 MINTLGKDLKPVGHAAKL 596
            +  L   L+  G+   L
Sbjct: 422 ALQGLTILLRSHGYVPNL 439



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 139/301 (46%), Gaps = 51/301 (16%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A   ++ L +KVF ++   +V+ +N LI   V+N L  +A   F  M   GV   
Sbjct: 93  VLSGYANNGEVELFVKVFEEMPARNVYSWNGLIGGYVRNGLFKEALECFKRMLVDGVVVP 152

Query: 115 N-FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           N +T   +L AC+      + + +H      GY G++FV N+LID Y+KCGV+  +L   
Sbjct: 153 NDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKAL--D 210

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP---ER-DAVSWNTIL-------- 221
           +F  +  +DI++WN++I  L      ++A  LF+ M    ER D V++  IL        
Sbjct: 211 VFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRAGERPDGVTFVGILSACTHMGL 270

Query: 222 ----------------------------DGYAKAGEMNLAFELFEKIPHR-NIVSWSTMV 252
                                       D   +AG +N A ++  K+P   ++V W+ ++
Sbjct: 271 VRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPMEPDVVIWAALL 330

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGL 307
                  ++EMA+L   R+    L P     + ++ + Y + G +++ ARL   M + G 
Sbjct: 331 GACRXYKNVEMAELALQRL--IELEPNNPGNFVMLSNIYKDLGRSQDVARLKVAMRDTGF 388

Query: 308 K 308
           +
Sbjct: 389 R 389



 Score = 42.4 bits (98), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 80/174 (45%), Gaps = 22/174 (12%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
           ++   LI   A C  +  A+ VF+ +   D+  +NT+I +   +   A A  +F  M+  
Sbjct: 190 FVGNALIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINSLAMHXHAADALSLFEGMKRA 249

Query: 110 GVFTDNFTYPFLLKACNG----KNWF-HLVQMI--HALIYKCGYFGDIFVPNSLIDSYSK 162
           G   D  T+  +L AC      +N F H   M+  + ++ +  ++G       ++D   +
Sbjct: 250 GERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYG------CMVDLLGR 303

Query: 163 CGVV--GVSLAKKLFMSMGERDIVSWNSMIAG--LVKGGELSE--ARRLFDEMP 210
            G++   V + +K+ M   E D+V W +++      K  E++E   +RL +  P
Sbjct: 304 AGLINQAVDIVRKMPM---EPDVVIWAALLGACRXYKNVEMAELALQRLIELEP 354


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  369 bits (947), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 198/584 (33%), Positives = 322/584 (55%), Gaps = 13/584 (2%)

Query: 21   LQNLHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
            L  L  C N    +  K +   I++  ++ + ++A  L++    C  +  A  VF   + 
Sbjct: 490  LHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRA 549

Query: 78   PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
             D+  +N++I    Q+     A+++FL+M+++G+  D  T+  +L  C       L + I
Sbjct: 550  RDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI 609

Query: 138  HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
            H LI + G   D+ + N+LI+ Y +CG   +  A ++F S+  R+++SW +MI G    G
Sbjct: 610  HMLIIESGLQLDVNLGNALINMYIRCG--SLQDAYEVFHSLRHRNVMSWTAMIGGFADQG 667

Query: 198  ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW--------S 249
            E  +A  LF +M         +      KA   +   +  +K+    + S         +
Sbjct: 668  EDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGN 727

Query: 250  TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
             ++  YSK G M  A+ +FD+MP + ++ W  +I+GYA+ G+   A +   QM+E G+  
Sbjct: 728  ALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVL 787

Query: 310  DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
            +  + +SIL AC+    L  G +VHA I K + + +  V  AL+ MYAKCGSL+ A  VF
Sbjct: 788  NKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVF 847

Query: 370  NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
            +  T+K++V+WNAM+   A HG   KAL  F+ M  EG  PD  TF  +L AC H+G + 
Sbjct: 848  DNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVM 907

Query: 430  KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            +G + F S+E  +G+ P +EHYGC++ LLGR+GR +EA  L+  MP  P+A +W TLLGA
Sbjct: 908  EGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGA 967

Query: 490  CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
            CR H  V LAE   +  ++L   +P  Y +LSN++AA G W+ VA +R  M+    +K  
Sbjct: 968  CRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEP 1027

Query: 550  GASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            G S +EVDN +HEF   D+ HP++ +IY+ +  L  +++  G++
Sbjct: 1028 GRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYS 1071



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 143/467 (30%), Positives = 237/467 (50%), Gaps = 12/467 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   K++ ++II+   QRDP +   L++    C  +  A +VF+ I   DV  YNT++  
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q +   +   +F  M  +G+  D  TY  LL A    +     + IH L    G   D
Sbjct: 259 YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V  +L   + +CG   V+ AK+   +  +RD+V +N++IA L + G   EA   + +M
Sbjct: 319 IRVGTALATMFVRCG--DVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQM 376

Query: 210 PERDAV----SWNTILDGYAKA---GEMNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDM 261
                V    ++ ++L+  + +   G   L      ++ H + V   ++++  Y++ GD+
Sbjct: 377 RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDL 436

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A+ LF+ MP + L+ W  II+GYA +    EA +LY QM+  G+KP   T + +L+AC
Sbjct: 437 PRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSAC 496

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
             S     G  +H  I +   K N ++ NAL++MY +CGS+  A +VF G   +D++SWN
Sbjct: 497 TNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWN 556

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G A HG  E A  LF  MK EG  PDK TF  VL  C +   ++ G Q  + +  +
Sbjct: 557 SMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQ-IHMLIIE 615

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            G+   V     +I++  R G L++A  +  S+    N + W  ++G
Sbjct: 616 SGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR-HRNVMSWTAMIG 661



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 250/509 (49%), Gaps = 13/509 (2%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +QN  + ++L + K++ AQ+++  +  D +++  LI+    CR +  A +VF  +   DV
Sbjct: 89  VQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDV 148

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N+LI    Q     +AF++F +MQ  G      TY  +L AC         + IH+ 
Sbjct: 149 ISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSK 208

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + GY  D  V NSL++ Y KC    +  A+++F  +  RD+VS+N+M+    +   + 
Sbjct: 209 IIEAGYQRDPRVQNSLLNMYGKCE--DLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVE 266

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMV 252
           E   LF +M       D V++  +LD +     ++    + +   +  + S     + + 
Sbjct: 267 ECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALA 326

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             + + GD+  AK   +    + +V +  +I+  A+ G  +EA   Y QM   G+  +  
Sbjct: 327 TMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRT 386

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T +S+L AC+ S  LG G  +H+ I++     +  + N+L+ MYA+CG L  A  +FN M
Sbjct: 387 TYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM 446

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            K+DL+SWNA++ G A      +A+ L+ +M+ EG  P + TF+ +L ACT++     G 
Sbjct: 447 PKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGK 506

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
                + R  GI         ++++  R G + EA  + +      + I W +++    +
Sbjct: 507 MIHEDILRS-GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQ 564

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           H + E A ++    ++ +G +P   T  S
Sbjct: 565 HGSYEAAYKLF-LEMKKEGLEPDKITFAS 592



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 204/430 (47%), Gaps = 15/430 (3%)

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           Q +   T+   Y  L++ C  K      + IHA + + G   DIF+ N LI+ Y KC   
Sbjct: 74  QPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKC--R 131

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
            VS A ++F+ M  RD++SWNS+I+   + G   +A +LF+EM         +++ +IL 
Sbjct: 132 SVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILT 191

Query: 223 GYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                 E+    ++  KI      R+    ++++  Y K  D+  A+ +F  +  + +V 
Sbjct: 192 ACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS 251

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           +  ++  YA+K   +E   L+ QM   G+ PD  T I++L A     +L  G ++H    
Sbjct: 252 YNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAV 311

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
                 +  V  AL  M+ +CG +  A         +D+V +NA++  LA HG  E+A  
Sbjct: 312 NEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFE 371

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
            + +M+ +G   ++ T++ VL AC+ +  +  G +  +S   + G    V+    +I + 
Sbjct: 372 QYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMY 430

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
            R G L  A  L  +MP + + I W  ++ G  R+ +  E  +  L   ++ +G  PG  
Sbjct: 431 ARCGDLPRARELFNTMP-KRDLISWNAIIAGYARREDRGEAMK--LYKQMQSEGVKPGRV 487

Query: 518 TMLSNIFAAT 527
           T L  + A T
Sbjct: 488 TFLHLLSACT 497



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 123/302 (40%), Gaps = 54/302 (17%)

Query: 30   LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            L + K++ A+I+K  +Q D  +   LIS  A C  +  A +VF++  + +V  +N +I A
Sbjct: 805  LEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINA 864

Query: 90   CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              Q+ L ++A   F  M ++G+  D  T+  +L ACN                   + G 
Sbjct: 865  YAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACN-------------------HSGL 905

Query: 150  IFVPNSLIDSY-SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            +   N +  S  S+ G+                 I  +  ++  L + G   EA  L ++
Sbjct: 906  VMEGNRIFSSLESQHGLSPT--------------IEHYGCLVGLLGRAGRFQEAETLINQ 951

Query: 209  MP-ERDAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSWSTMVWGYSKDG---DM 261
            MP   DA  W T+L      G + LA        K+  RN   +  +   Y+  G   D+
Sbjct: 952  MPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDV 1011

Query: 262  EMAKLLFD-----RMPAKTLVPWTIIISGY-AEKGMAKEAARLYDQ-------MEEAGLK 308
               + + +     + P ++ +    II  + A      E A +Y++       ME AG  
Sbjct: 1012 AKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYS 1071

Query: 309  PD 310
            PD
Sbjct: 1072 PD 1073


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 191/546 (34%), Positives = 306/546 (56%), Gaps = 37/546 (6%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           CKNL    Q+    IK  +  D Y   KLI   ++++   +  A ++     +PD  ++N
Sbjct: 182 CKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFN 241

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           TL+R   ++     +  VF++M  KG +F D+F++ F++KA            +H    K
Sbjct: 242 TLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALK 301

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G    +FV  +LI  Y +CG VG                                  AR
Sbjct: 302 HGLDSHLFVATTLIGMYGECGCVGF---------------------------------AR 328

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           ++FDEMP+ + V+WN ++    +  +++ A E+F+K+  RN  SW+ M+ GY K G++E 
Sbjct: 329 KVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELEC 388

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           AK +F  MP +  V W+ +I G++  G   E+   + ++  A ++P++ +L  +L+AC++
Sbjct: 389 AKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTGVLSACSQ 448

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
           SG    G  +H  + K  +    +V NAL+DMY++CG++  A  VF GM  K+ +VSW +
Sbjct: 449 SGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRSIVSWTS 508

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ GLAMHG GE+A+ +F+ M + G  PD+ +F+ +L AC+HAG I +G  YF  M+R Y
Sbjct: 509 MIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVY 568

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I P VEHYGCM+DL GRSG+L++A   +  MP+ P AI+W TLLGAC  H  +ELAE+V
Sbjct: 569 HIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSSHGNIELAEQV 628

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L  L  ++ G+  +LSN++A  G W  VA++R  M   R +K +  S VEV   +++
Sbjct: 629 KQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAWSLVEVGKTMYK 688

Query: 563 FSVCDQ 568
           F+ C++
Sbjct: 689 FTACEK 694


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 177/430 (41%), Positives = 269/430 (62%)

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
           GV  A   F  M  +DI SWN++I+G  + G++ +A  LF  MPE++ VSW+ ++ GY +
Sbjct: 151 GVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVE 210

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            G++  A EL++ +  +++V  + M+ GY K G +E+A+ +F RM  K LV W  +I+GY
Sbjct: 211 HGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGY 270

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
            E   A++  +++  M E+ ++P+  +L S+L  C+    L LG ++H  ++K     +T
Sbjct: 271 VENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDT 330

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
             C +L+ MY KCG LD+A  +F  M +KD+++WNAM+ G A HG G KAL LF +M++ 
Sbjct: 331 TACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNG 390

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
              PD  TFV V+ AC HAGF+D GVQYF SM++++GI  +  HY C+IDLLGR+GRL E
Sbjct: 391 TMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDE 450

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A+ L++ MP  P+A I+GTLLGACR H  ++LAE     L+ L  +    Y  L+NI+AA
Sbjct: 451 AVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAA 510

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
           T  W++VA VR  MK+    K  G S +E+ +  HEF   D+LHP+   I++ +N L   
Sbjct: 511 TNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGK 570

Query: 587 LKPVGHAAKL 596
           +K  G+   L
Sbjct: 571 MKLAGYVPDL 580



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 11/324 (3%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKI 240
           D+VS N  IA  V+  +L  AR +F++M  R  V+WNT+L GY K AG++  A ELF+KI
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P  + VS++ M+  Y +   ++ A   F++MP K +  W  +ISG+A+ G  ++A  L+ 
Sbjct: 132 PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFS 191

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
            M E     +  +  ++++   E G L    +++ ++        T    A++  Y K G
Sbjct: 192 VMPEK----NGVSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVET----AMLTGYMKFG 243

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            ++ A  +F  M  K+LV+WN+M+ G   + + E  L +F  M +    P+  +   VL 
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
            C++   +  G Q  + +     +         +I +  + G L  A +L   MP   + 
Sbjct: 304 GCSNLSALPLGRQ-MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDV 361

Query: 481 IIWGTLLGACRKHNAVELAEEVLD 504
           I W  ++    +H A   A  + D
Sbjct: 362 ITWNAMISGYAQHGAGRKALHLFD 385



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 158/322 (49%), Gaps = 35/322 (10%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+  FN +   D+  +NTLI    QN    +AF +F  M EK                NG
Sbjct: 155 ALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEK----------------NG 198

Query: 128 KNWFHLVQ--MIHA------LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            +W  ++   + H        +YK      + V  +++  Y K G   V LA+++F  M 
Sbjct: 199 VSWSAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFG--KVELAERIFQRMA 256

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLA-- 233
            +++V+WNSMIAG V+     +  ++F  M E     + +S +++L G +    + L   
Sbjct: 257 VKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQ 316

Query: 234 -FELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
             +L  K P  ++  + ++++  Y K GD++ A  LF  MP K ++ W  +ISGYA+ G 
Sbjct: 317 MHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGA 376

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCN 350
            ++A  L+D+M    +KPD  T ++++ AC  +G + LG++   S+ K +  +       
Sbjct: 377 GRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYT 436

Query: 351 ALVDMYAKCGSLDNAMSVFNGM 372
            ++D+  + G LD A+S+   M
Sbjct: 437 CVIDLLGRAGRLDEAVSLIKEM 458



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 103/218 (47%), Gaps = 11/218 (5%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++ LA ++F  +   ++  +N++I   V+N       +VF  M E  V  +  +   +L 
Sbjct: 244 KVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLL 303

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
            C+  +   L + +H L+ K     D     SLI  Y KCG   +  A KLF+ M  +D+
Sbjct: 304 GCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCG--DLDSAWKLFLEMPRKDV 361

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEK 239
           ++WN+MI+G  + G   +A  LFD+M     + D +++  ++     AG ++L  + F+ 
Sbjct: 362 ITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKS 421

Query: 240 IPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           +          V ++ ++    + G ++ A  L   MP
Sbjct: 422 MKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMP 459



 Score = 40.0 bits (92), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 71/188 (37%), Gaps = 37/188 (19%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     +Q+   + K  L +D      LIS    C  +  A K+F ++   DV  +
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITW 364

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    Q+    +A  +F  M+   +  D  T+  ++ ACN           HA    
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACN-----------HA---- 409

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEA 202
                        +D       +GV   K +    G E   V +  +I  L + G L EA
Sbjct: 410 -----------GFVD-------LGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEA 451

Query: 203 RRLFDEMP 210
             L  EMP
Sbjct: 452 VSLIKEMP 459


>gi|242048970|ref|XP_002462229.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
 gi|241925606|gb|EER98750.1| hypothetical protein SORBIDRAFT_02g022150 [Sorghum bicolor]
          Length = 686

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/558 (36%), Positives = 311/558 (55%), Gaps = 50/558 (8%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++ LA+  F  I  PD   YNTL+ A   +S  A A  +F +M  K    D+ +Y  ++ 
Sbjct: 81  RLTLALSFFRSIPRPDSFSYNTLLHALGVSSSLADARALFDEMPVK----DSVSYNVMIS 136

Query: 124 --ACNG-----KNWFHLVQ---------MIHALI-----------YKCGYFGDIFVPNSL 156
             A +G     +++F L           M+ A I           +      D    N+L
Sbjct: 137 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYIRNGRIQEARDLFDSRTEWDAISWNAL 196

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS 216
           +  Y +C    +  A+K+F  M +RD+VSWN+M++G  + G+++EARRLFD  P RD  +
Sbjct: 197 MAGYVQCS--QIEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLFDVAPIRDVFT 254

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           W  ++ GYA+ G +  A  +F+ +P +N VSW+ M+  Y +   ME AK LFD MP + +
Sbjct: 255 WTAVVSGYAQNGMLEEAKRVFDAMPEKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV 314

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
             W  +++GYA+ GM  EA  ++D M +     D  +  ++LAA ++ G     +++   
Sbjct: 315 ASWNTMLTGYAQAGMLDEARAIFDMMPQ----KDAVSWAAMLAAYSQGGFSEETLQLFKE 370

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           +     +C          MY KCG+++ A S F  M ++D+VSWN M+ G A HG G++A
Sbjct: 371 MG----RCA---------MYFKCGNMEEAHSAFEEMEERDIVSWNTMIAGYARHGFGKEA 417

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +F  M+     PD  T VGVL AC+H+G ++KG+ YFYSM RD+G+  + EHY CMID
Sbjct: 418 LEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVTAKPEHYTCMID 477

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+GRL EA+ L++ MP EP++ +WG LLGA R H   EL     + +  L+  + G 
Sbjct: 478 LLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENAGM 537

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y +LSNI+A++G W  V  +RL M +   +K  G S +EV N+VH FSV D +HP+ E I
Sbjct: 538 YVLLSNIYASSGKWRDVDKMRLMMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDI 597

Query: 577 YQMINTLGKDLKPVGHAA 594
           Y  +  L   +K  G+ +
Sbjct: 598 YGFLEDLDIRMKKAGYVS 615



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 146/325 (44%), Gaps = 18/325 (5%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           +++  N  I   ++ G + +A RLF  M  R   ++N +L GYA  G + LA   F  IP
Sbjct: 34  EVIRRNKAITAHMRAGRVPDAERLFAAMSRRSTSTYNAMLGGYAANGRLTLALSFFRSIP 93

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             +  S++T++        +  A+ LFD MP K  V + ++IS +A  G+   A   +D 
Sbjct: 94  RPDSFSYNTLLHALGVSSSLADARALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDL 153

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
             E     D  +   +LAA   +G +     +  S    R + +    NAL+  Y +C  
Sbjct: 154 APE----KDAVSWNGMLAAYIRNGRIQEARDLFDS----RTEWDAISWNALMAGYVQCSQ 205

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           ++ A  +FN M ++D+VSWN M+ G A  G   +A  LF    D     D +T+  V+  
Sbjct: 206 IEEAQKMFNRMPQRDVVSWNTMVSGHARRGDMAEARRLF----DVAPIRDVFTWTAVVSG 261

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
               G +++  + F +M     +      +  M+    +   ++EA  L  +MP   N  
Sbjct: 262 YAQNGMLEEAKRVFDAMPEKNAV-----SWNAMMAAYVQRRMMEEAKELFDAMPCR-NVA 315

Query: 482 IWGTLLGACRKHNAVELAEEVLDCL 506
            W T+L    +   ++ A  + D +
Sbjct: 316 SWNTMLTGYAQAGMLDEARAIFDMM 340


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 205/572 (35%), Positives = 321/572 (56%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++  Q+I      + +    +++  A CR +  A K+F+ + + D+  +NT+I 
Sbjct: 190 DLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIIS 249

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN     A  + L MQE+G   D+ T   +L A        + + IH    + G+  
Sbjct: 250 GYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFES 309

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF-- 206
            + V  +L+D YSKCG VG   A+ +F  M  + +VSWNSMI G V+ G+   A  +F  
Sbjct: 310 FVNVSTALVDMYSKCGSVGT--ARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQK 367

Query: 207 --DEMPERDAVSWNTILDGYAKAGEMN---LAFELFEKIPHRNIVS-WSTMVWGYSKDGD 260
             DE  E   V+    L   A  G++       +L +++   + VS  ++++  YSK   
Sbjct: 368 MMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKR 427

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +++A  +F+ +  KTLV W  +I GYA+ G   EA   + +M+   +KPD  T++S++ A
Sbjct: 428 VDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            AE  +L     +H  + +     N  V  ALVDMYAKCG++  A  +F+ M ++ + +W
Sbjct: 488 LAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTW 547

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NAM+ G   HG G+ AL LF +MK E   P++ TF+ VL AC+H+G +++G QYF SM++
Sbjct: 548 NAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKK 607

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           DYG+ P ++HYG M+DLLGR+ RL EA   +Q MP+EP   ++G +LGACR H  VEL E
Sbjct: 608 DYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGE 667

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
           +  + +  L   D G + +L+NI+A    W+KVA VR  M+K   QK  G S VE+ NEV
Sbjct: 668 KAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEV 727

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F      HP++++IY  + TLG  +K  G+
Sbjct: 728 HTFYSGTTSHPQAKKIYAFLETLGNRIKAAGY 759



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 144/533 (27%), Positives = 247/533 (46%), Gaps = 43/533 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C ++ +  Q    IIK  L  +     KL+S       +  A +VF  I+D    LY
Sbjct: 84  LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELY 143

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           +T+++   +NS    A   F  M+  GV    + + +LLK C         + IH  +  
Sbjct: 144 HTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIV 203

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG----EL 199
            G+  ++F    +++ Y+KC +  V  A K+F  M ERD+V WN++I+G  + G     L
Sbjct: 204 NGFASNVFAMTGVVNMYAKCRL--VEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTAL 261

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF---EKIPHRNIVSWST-MVWGY 255
               R+ +E    D+++  +IL   A  G + +   +     +    + V+ ST +V  Y
Sbjct: 262 ELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMY 321

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           SK G +  A+L+FDRM  KT+V W  +I GY + G    A  ++ +M +  ++  + T++
Sbjct: 322 SKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVM 381

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L ACA+ G +  G  VH  +++     + +V N+L+ MY+KC  +D A  +F  +  K
Sbjct: 382 GALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHK 441

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF-------- 427
            LVSWNAM+ G A +G+  +A+  F +M+ +   PD +T V V+ A              
Sbjct: 442 TLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIH 501

Query: 428 -------IDKGV-------------QYFYSMERDYGILPQ--VEHYGCMIDLLGRSGRLK 465
                  +DK V                ++  + + ++ +  V  +  MID  G  G  K
Sbjct: 502 GLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGK 561

Query: 466 EALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
            AL L + M    ++PN + +  +L AC     VE   +    + +  G +P 
Sbjct: 562 AALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPA 614


>gi|297805312|ref|XP_002870540.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316376|gb|EFH46799.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 192/531 (36%), Positives = 316/531 (59%), Gaps = 12/531 (2%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           CK+     Q+ A+II+  L++D  +    ISS +    +  +  VF  +  P  +L+N L
Sbjct: 20  CKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSS--SLSYSSSVFERVPYPGTYLWNHL 77

Query: 87  IRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           I+      L  +   + + M   G    D +T+P ++K C+    F +   +H L+ + G
Sbjct: 78  IKGYSNKFLFFETVSLLMRMMRTGFARPDEYTFPLVMKVCSNNAEFRVGSTVHGLVLRIG 137

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D+ +  S +D Y KC    +  A+K+F  M ER++VSW ++I   VK GEL EA+R+
Sbjct: 138 FDKDVVLGTSFVDFYGKCK--DLCSARKVFGEMPERNVVSWTALIVAYVKSGELEEAKRM 195

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD MPER+  +WN ++DG  K+G++  A +LF+++P R+I+S+++M+ GY+K GDM  A+
Sbjct: 196 FDLMPERNLGTWNALVDGLVKSGDLVNARKLFDEMPKRDIISYTSMIDGYAKGGDMVSAR 255

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LF+      +  W+ +I GYA+ G   EA +++ +M    +KPD+  ++ +++AC++ G
Sbjct: 256 DLFENARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGLMSACSQMG 315

Query: 326 LLGLGMKV----HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
              L  KV    H S+NK+    +  V  AL+DM AKCG +D A  +F  M ++DLVS+ 
Sbjct: 316 CFELCEKVDSYLHQSMNKFS---SHYVIPALIDMNAKCGHMDRAAKLFEEMPQRDLVSYC 372

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G+A+HG G +A+ LF +M DEG  PD+  F  +L  C+ +  +++G++YF  M ++
Sbjct: 373 SMMEGMAIHGCGSEAVRLFEKMVDEGIVPDEVAFTVILKVCSQSRLVEEGLRYFELMRKE 432

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y IL   +HY C+++LL R+G+LKEA  L++SMP E +A  WG+LLG C  H   E+AE 
Sbjct: 433 YSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNTEIAEV 492

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           V   L  L+    G+Y +LSNI+AA   W  +A++R +M +   +K  G S
Sbjct: 493 VARQLFELEPQSAGSYVLLSNIYAALDRWADLAHLRDKMNENGIKKICGRS 543


>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
          Length = 514

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 189/509 (37%), Positives = 304/509 (59%), Gaps = 41/509 (8%)

Query: 57  SSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF 116
           +SL++   +  A K+F++I  PDV + N ++R   Q+    +   ++ +M+++GV  D +
Sbjct: 20  ASLSVPGALKYAHKLFDEIPKPDVSICNHVLRGSAQSMKPEKTVSLYTEMEKRGVSPDRY 79

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T+ F+LKAC+   W       H  + + G+  + +V N+LI  ++ CG +G+  A +LF 
Sbjct: 80  TFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGI--ASELFD 137

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
              +   V+W+SM +G  K G++ EA RLFDEMP +D V+WN ++ G  K  EM+ A EL
Sbjct: 138 DSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSAREL 197

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
           F++   +++V+W+ M                               ISGY   G  KEA 
Sbjct: 198 FDRFTEKDVVTWNAM-------------------------------ISGYVNCGYPKEAL 226

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH------ASINKYRFKCNTNVCN 350
            ++ +M +AG  PD  T++S+L+ACA  G L  G ++H      AS++   +   T + N
Sbjct: 227 GIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIY-VGTPIWN 285

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           AL+DMYAKCGS+D A+ VF G+  +DL +WN ++ GLA+H   E ++ +F  M+     P
Sbjct: 286 ALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKVWP 344

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           ++ TF+GV+ AC+H+G +D+G +YF  M   Y I P ++HYGCM+D+LGR+G+L+EA   
Sbjct: 345 NEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMF 404

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           V+SM +EPNAI+W TLLGAC+ +  VEL +   + L+ ++  + G+Y +LSNI+A+TG W
Sbjct: 405 VESMKIEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQW 464

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           + V  VR     TR +KP+G S +E D++
Sbjct: 465 DGVQKVRKMFDDTRVKKPTGVSLIEEDDD 493



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 93/407 (22%), Positives = 168/407 (41%), Gaps = 68/407 (16%)

Query: 24  LHKCKNLNQTKQLFA---QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L      FA   ++++     + Y+   LI   A C  +G+A ++F+D      
Sbjct: 85  LKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELFDDSAKAHK 144

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++++     +     +A R+F +M     + D   +  ++  C               
Sbjct: 145 VAWSSMTSGYAKRGKIDEAMRLFDEMP----YKDQVAWNVMITGC--------------- 185

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             KC            +DS           A++LF    E+D+V+WN+MI+G V  G   
Sbjct: 186 -LKC----------KEMDS-----------ARELFDRFTEKDVVTWNAMISGYVNCGYPK 223

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------- 247
           EA  +F EM +     D V+  ++L   A  G++     L   I     VS         
Sbjct: 224 EALGIFKEMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPI 283

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W+ ++  Y+K G ++ A  +F  +  + L  W  +I G A    A+ +  ++++M+   +
Sbjct: 284 WNALIDMYAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALH-HAEGSIEMFEEMQRLKV 342

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            P++ T I ++ AC+ SG +  G K  + + + Y  + N      +VDM  + G L+ A 
Sbjct: 343 WPNEVTFIGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAF 402

Query: 367 SVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALG------LFSRMKDE 406
                M  + + + W  +L    ++G  E  LG      L S  KDE
Sbjct: 403 MFVESMKIEPNAIVWRTLLGACKIYGNVE--LGKYANEKLLSMRKDE 447


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 326/582 (56%), Gaps = 54/582 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI-----SSLALCRQMGLAIKVFNDIQDP 78
           L  CK+++Q KQ+ A I    LQ+D  I  KL+     SSL        A ++FN I  P
Sbjct: 15  LKSCKSMSQLKQIQAHIFCFGLQQDRDILNKLMAFSMDSSLG---DFNYANRIFNHIHHP 71

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            + +YN +I+A V+      A  +F  ++E+GV+ DN+TYP++LK           + IH
Sbjct: 72  SLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGCIGEVREGEKIH 131

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVV-GVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           A + K G   D +V NSL+D Y++ G+V G +   ++F  M ERD VSWN MI+G V+  
Sbjct: 132 AFVVKTGLEFDPYVCNSLMDMYAELGLVEGFT---QVFEEMPERDAVSWNIMISGYVRCK 188

Query: 198 ELSEA----RRLFDEMPER-----------------------------------DAVSWN 218
              EA    RR+  E  E+                                     +  N
Sbjct: 189 RFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGN 248

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            +LD Y K G +++A E+F+ +  +N+  W++MV GY   G ++ A+ LF+R P++ +V 
Sbjct: 249 ALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVL 308

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           WT +I+GY +    ++A  L+ +M+  G++PD   ++++L  CA+ G L  G  +H  I+
Sbjct: 309 WTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYID 368

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           + R K +  V  AL++MYAKCG ++ ++ +FNG+   D  SW +++ GLAM+G+  +AL 
Sbjct: 369 ENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMNGKTSEALE 428

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           LF  M+  G  PD  TFV VL AC HAG +++G + F+SM   Y I P +EHYGC IDLL
Sbjct: 429 LFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLL 488

Query: 459 GRSGRLKEALRLVQSMPVEPNAII---WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           GR+G L+EA  LV+ +P + N II   +G LL ACR +  +++ E +   L ++K SD  
Sbjct: 489 GRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALAKVKSSDSS 548

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
            +T+L++I+A+   W  V  VR +MK    +K  G S++EVD
Sbjct: 549 LHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYSAIEVD 590


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/552 (34%), Positives = 308/552 (55%), Gaps = 41/552 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+++F  + + D   +NT+I    Q+   A+    FL+M  +G   ++ TY  +L AC  
Sbjct: 199 ALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTS 258

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                    +HA I +     D++    LID Y+KCG   +  A+++F  + E + VSW 
Sbjct: 259 IYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCG--RLESARQVFDGLTEHNAVSWT 316

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVS------------------------------- 216
           S+I G+ + G   EA  LF++M E    S                               
Sbjct: 317 SLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITR 376

Query: 217 --------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
                    N ++  YAK G++  A   FE +P R+I+SW+ M+  +S+ GD+E A+  F
Sbjct: 377 GLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYF 436

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D+MP + ++ W  +++ Y ++G  +E  ++Y QM   G+K D  T  + ++ACA+  +L 
Sbjct: 437 DKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLI 496

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           LG ++ A   K  F  N +V N++V MY++CG ++ A  +F+ +  K+LVSWNAM+ G A
Sbjct: 497 LGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYA 556

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            +GQG K + +F +M + G  PD+ ++V VL  C+H+GF+ +G  YF SM +D+GI P  
Sbjct: 557 QNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMS 616

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EH+ CM+DLLGR+G+L++A  L+  MP +PNA IWG LL ACR H   +LAE  +  L+ 
Sbjct: 617 EHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLE 676

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L    PG+Y +L+NI++ +G    V NVR  M+    +K  G S +EVDN VH F+V D 
Sbjct: 677 LDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDT 736

Query: 569 LHPKSEQIYQMI 580
            HP+ + +++M+
Sbjct: 737 NHPQIKDVHRML 748



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 130/468 (27%), Positives = 226/468 (48%), Gaps = 57/468 (12%)

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           +K C       + + +HA +   G    IF+ N L++ YS CG++  S A ++F  +   
Sbjct: 11  MKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLI--SDAYRVFGGIMFP 68

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT---------------------- 219
           ++ SWN+MI+G    G++ EA +LF++MPERD+VSWN+                      
Sbjct: 69  NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLG 128

Query: 220 --------------------------ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                                     +LD Y K G M+ A ++F + P+ ++  W++M++
Sbjct: 129 YLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIY 188

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           GYSK G ++ A  LF +MP +  V W  +IS  ++ G   E    + +M   G +P+  T
Sbjct: 189 GYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMT 248

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
             S+L+AC     L  G  +HA I +     +      L+DMYAKCG L++A  VF+G+T
Sbjct: 249 YASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLT 308

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           + + VSW +++ G+A  G  E+AL LF++M++     D++T   VL  C     I  G Q
Sbjct: 309 EHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQ 368

Query: 434 -YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
            + +++ R  G+   V     ++ +  + G + +A    + MP+  + I W  ++ A  +
Sbjct: 369 LHAHTITR--GLDSSVPVANALVTMYAKCGDVWKANHAFELMPIR-DIISWTAMITAFSQ 425

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
              VE A E  D   ++   +  ++  +   +   G W +   V +QM
Sbjct: 426 AGDVEKAREYFD---KMPERNVISWNSMLATYMQRGYWEEGLKVYIQM 470



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 246/572 (43%), Gaps = 93/572 (16%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           E ++     +++   ++L AQ+I + L+   ++   L++  + C  +  A +VF  I  P
Sbjct: 9   ESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFP 68

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEK----------GVFTDNFTYPFLLKACNGK 128
           +V+ +NT+I     +    +A ++F  M E+          G F  N      +KA    
Sbjct: 69  NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYF-HNGELEATIKASGSL 127

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
            +  L   +H    K  +  D  V  S++D Y KCG   +  A+K+F       +  WNS
Sbjct: 128 GYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCG--AMDFAQKVFCRTPNPSLFCWNS 185

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG----EMNLAFELFEKIPHRN 244
           MI G  K G + +A  LF +MPERD VSWNT++   ++ G     +N   E++ +    N
Sbjct: 186 MIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPN 245

Query: 245 IVSWSTMV----------WG-------------------------YSKDGDMEMAKLLFD 269
            +++++++          WG                         Y+K G +E A+ +FD
Sbjct: 246 SMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFD 305

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            +     V WT +I G A+ G  +EA  L++QM E  +  D  TL ++L  C     + +
Sbjct: 306 GLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISI 365

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++HA         +  V NALV MYAKCG +  A   F  M  +D++SW AM+   + 
Sbjct: 366 GEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQ 425

Query: 390 HGQGEKALGLFSRMKD-------------------------------EGFGPDKYTFVGV 418
            G  EKA   F +M +                               EG   D  TF   
Sbjct: 426 AGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTS 485

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           + AC     +  G Q     E+  G    V     ++ +  R G+++EA ++  S+ V  
Sbjct: 486 ISACADLAVLILGNQILAQAEK-LGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSI-VMK 543

Query: 479 NAIIWGTLL------GACRKHNAVELAEEVLD 504
           N + W  ++      G  RK   +E+ E++L+
Sbjct: 544 NLVSWNAMMAGYAQNGQGRK--VIEIFEKMLN 573



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/465 (25%), Positives = 212/465 (45%), Gaps = 61/465 (13%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L     L A+I++++   D Y    LI   A C ++  A +VF+ + + +   + +LI 
Sbjct: 261 DLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIG 320

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q     +A  +F  M+E  V +D FT   +L  C  +    + + +HA     G   
Sbjct: 321 GVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDS 380

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + V N+L+  Y+KCG   V  A   F  M  RDI+SW +MI    + G++ +AR  FD+
Sbjct: 381 SVPVANALVTMYAKCG--DVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDK 438

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWST-------------- 250
           MPER+ +SWN++L  Y + G      +++ ++    +    +++ST              
Sbjct: 439 MPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILG 498

Query: 251 ---------------------MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
                                +V  YS+ G +E A+ +F  +  K LV W  +++GYA+ 
Sbjct: 499 NQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQN 558

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK--------YR 341
           G  ++   ++++M   G  PD  + +S+L+ C+ SG +  G     S+ K          
Sbjct: 559 GQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEH 618

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA-LGL 399
           F C       +VD+  + G L+ A ++ N M  K +   W A+L    +HG  + A L +
Sbjct: 619 FVC-------MVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAV 671

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            + ++ +  GP  Y  +  +   + +G I +GV     + RD G+
Sbjct: 672 KNLLELDAEGPGSYCLLANI--YSESGKI-QGVTNVRKLMRDKGV 713


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 203/602 (33%), Positives = 326/602 (54%), Gaps = 41/602 (6%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++  Q+   ++K+ L+ D +++  LI   A C ++ L  K+F+ + + +V  + +LI  
Sbjct: 146 LSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLING 205

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
                L+ +A  +F  M E GV  +  T   ++ AC       L + + + I + G    
Sbjct: 206 YSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELS 265

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             + N+L+D Y KCG   +  A+++F     +++V +N++++  V     S+   + DEM
Sbjct: 266 TIMVNALVDMYMKCG--DICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEM 323

Query: 210 ----PERDAVS-------------------------------W----NTILDGYAKAGEM 230
               P  D V+                               W    N I+D Y K G+ 
Sbjct: 324 LQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKR 383

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
             A ++FE +P++ +V+W++++ G  +DGDME+A  +FD M  + LV W  +I    +  
Sbjct: 384 EAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVS 443

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
           M +EA  L+ +M+  G+  D  T++ I +AC   G L L   V   I K     +  +  
Sbjct: 444 MFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGT 503

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           ALVDM+++CG   +AM VF  M K+D+ +W A +  +AM G  E A+ LF+ M ++   P
Sbjct: 504 ALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKP 563

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D   FV +L AC+H G +D+G Q F+SME+ +GI P + HYGCM+DLLGR+G L+EA+ L
Sbjct: 564 DDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDL 623

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           +QSMP+EPN ++WG+LL ACRKH  VELA    + L +L     G + +LSNI+A+ G W
Sbjct: 624 IQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKW 683

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             VA VRLQMK+   QK  G+SS+EV   +HEF+  D+ H ++  I  M+  +   L   
Sbjct: 684 TDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEA 743

Query: 591 GH 592
           G+
Sbjct: 744 GY 745



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 157/532 (29%), Positives = 247/532 (46%), Gaps = 56/532 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDL--QRDPYIAPKLISS---LALCRQMGLAIKVFNDIQD- 77
           L  CK L + KQL   ++K  L   +      KLI+S   +     +  A   F D    
Sbjct: 32  LVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGN 91

Query: 78  -PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
              + +YN LIR      L  QA  +++ M   G+  D +T+PFLL AC+          
Sbjct: 92  MASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQ 151

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H  + K G  GDIFV NSLI  Y++CG   V L +KLF  M ER++VSW S+I G   G
Sbjct: 152 VHGAVLKMGLEGDIFVSNSLIHFYAECG--KVDLGRKLFDGMLERNVVSWTSLINGY-SG 208

Query: 197 GELS-EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
            +LS EA  LF +M E     + V+   ++   AK  ++ L  ++   I    +   + M
Sbjct: 209 RDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIM 268

Query: 252 VWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           V      Y K GD+  A+ +FD    K LV +  I+S Y     A +   + D+M + G 
Sbjct: 269 VNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGP 328

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC-------- 359
           +PD  T++S +AACA+ G L +G   HA + +   +   N+ NA++DMY KC        
Sbjct: 329 RPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACK 388

Query: 360 -----------------------GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
                                  G ++ A  +F+ M ++DLVSWN M+  L      E+A
Sbjct: 389 VFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEA 448

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           + LF  M+++G   D+ T VG+  AC + G +D        +E++  I   ++    ++D
Sbjct: 449 IELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKN-DIHVDLQLGTALVD 507

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC----RKHNAVELAEEVLD 504
           +  R G    A+ + + M  + +   W   +G          A+EL  E+L+
Sbjct: 508 MFSRCGDPSSAMHVFKRME-KRDVSAWTAAIGVMAMEGNTEGAIELFNEMLE 558



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 189/412 (45%), Gaps = 43/412 (10%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K K+L   K++ + I +L ++    +   L+     C  +  A ++F++  + ++ +YNT
Sbjct: 243 KLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNT 302

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++   V +   +    +  +M +KG   D  T    + AC       + +  HA + + G
Sbjct: 303 IMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNG 362

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
             G   + N++ID Y KCG      A K+F  M  + +V+WNS+IAGLV+ G++  A R+
Sbjct: 363 LEGWDNISNAIIDMYMKCG--KREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRI 420

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------------------- 245
           FDEM ERD VSWNT++    +      A ELF ++ ++ I                    
Sbjct: 421 FDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGAL 480

Query: 246 --VSW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
               W                 + +V  +S+ GD   A  +F RM  + +  WT  I   
Sbjct: 481 DLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVM 540

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCN 345
           A +G  + A  L+++M E  +KPDD   +++L AC+  G +  G ++  S+ K +  + +
Sbjct: 541 AMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPH 600

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
                 +VD+  + G L+ A+ +   M  + + V W ++L     H   E A
Sbjct: 601 IVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELA 652



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 127/251 (50%), Gaps = 3/251 (1%)

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
           +L  +  +I GYA  G+  +A  LY QM   G+ PD  T   +L+AC++   L  G++VH
Sbjct: 94  SLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQVH 153

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
            ++ K   + +  V N+L+  YA+CG +D    +F+GM ++++VSW +++ G +     +
Sbjct: 154 GAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSK 213

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +A+ LF +M + G  P+  T V V+ AC     ++ G +   S   + G+         +
Sbjct: 214 EAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELG-KKVCSYISELGMELSTIMVNAL 272

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +D+  + G +  A R +       N +++ T++     H        +LD +++ KG  P
Sbjct: 273 VDMYMKCGDICAA-RQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQ-KGPRP 330

Query: 515 GNYTMLSNIFA 525
              TMLS I A
Sbjct: 331 DKVTMLSTIAA 341


>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 593

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 313/568 (55%), Gaps = 42/568 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-MGLAIKVFNDIQDPDVHLYNTLI 87
           +LN  K+L AQ+++  +  DP    ++I   AL  Q +  A  VFN IQ P + ++N +I
Sbjct: 26  SLNSIKELHAQLVRAQMHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMI 85

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               ++     A   +  M  KG+   + T+ FL K+C   +     QM+     K G+ 
Sbjct: 86  HGLSKSDRPNDAIHFYNTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFE 145

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             +FV N+LI  Y   G   +++A+K+F  M ERD+VSWNS+I G  +     +   LF 
Sbjct: 146 SYLFVSNALIHMYVCFG--ELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFR 203

Query: 208 EMP----ERDAVS-------------W----------------------NTILDGYAKAG 228
           EM       D+V+             W                      NT++D Y + G
Sbjct: 204 EMQAINVRADSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRG 263

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
            ++ A  +F ++  +NIVSW+ M+ GY+K G++  AK LF+ MP++ ++ WT +I GY+ 
Sbjct: 264 MIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSL 323

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
                EA +L+ +M  + +KPD+ T+ + L+ACA  G L  G  VH  I K+  K +  V
Sbjct: 324 AKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFV 383

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N+L+DMY KCG ++ A+ VFN M  +D VSW +++ GLA++G  E AL +F +M  EG 
Sbjct: 384 GNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGI 443

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            P   TFVGVL AC H G +DKGV++F SME  Y + P+++HYGC++DLL RSG L  A 
Sbjct: 444 CPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAY 503

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             ++ MP+ P+ +IW  LL AC+ H  + LAE V   L+ L  S+ GNY + S+ +A + 
Sbjct: 504 NFIKKMPIVPDVVIWRILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSD 563

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEV 556
            W+ V  +R  M+ T  QKP   SS+EV
Sbjct: 564 RWDDVIKIRKLMEVTNLQKPCAYSSIEV 591



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/410 (28%), Positives = 197/410 (48%), Gaps = 49/410 (11%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +  ++ Q + +    +KL  +   +++  LI       ++ +A KVF+ + + DV  +N+
Sbjct: 125 RVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNS 184

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL---IY 142
           +I    Q +   +   +F +MQ   V  D+ T   ++KA +   +    +M   L   I 
Sbjct: 185 IICGYYQFNRFKKVLDLFREMQAINVRADSVT---MMKAISATCFLSEWEMGDYLVKYID 241

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G   D+++ N+LID Y + G+  +  A ++F  M E++IVSWN+MI G  K G L  A
Sbjct: 242 EHGVVVDLYLGNTLIDMYGRRGM--IDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAA 299

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVSWS------- 249
           ++LF+EMP RD +SW +++ GY+ A +   A +LF+++      P    V+ +       
Sbjct: 300 KKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHL 359

Query: 250 --------------------------TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                                     +++  Y K G +E A  +F+ M  +  V WT II
Sbjct: 360 GSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSII 419

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRF 342
           SG A  G A+ A  ++DQM + G+ P  GT + +L ACA  GL+  G++   S+ N YR 
Sbjct: 420 SGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRL 479

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHG 391
                    +VD+  + G LD A +    M    D+V W  +L    +HG
Sbjct: 480 APEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHG 529


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/571 (34%), Positives = 319/571 (55%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN  +++  ++++  L  +  +   LIS  A C  +  A +VF+ +   D   + TL  A
Sbjct: 161 LNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 220

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             ++    ++ + +  M ++GV     TY  +L AC         + IHA I +  +  D
Sbjct: 221 YAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSD 280

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +L   Y KCG   V  A+++F  +  RD+++WN+MI GLV  G+L EA  +F  M
Sbjct: 281 VRVSTALTKMYIKCG--AVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRM 338

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
            +     D V++  IL   A+ G +    E+  +     +VS     + ++  YSK G M
Sbjct: 339 LKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSM 398

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ +FDRMP + +V WT ++ GYA+ G   E+   + +M + G++ +  T + +L AC
Sbjct: 399 KDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKAC 458

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           +    L  G ++HA + K     +  V NAL+ MY KCGS+++A+ V  GM+ +D+V+WN
Sbjct: 459 SNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWN 518

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            ++ GLA +G+G +AL  F  MK E   P+  TFV V+ AC     +++G + F SM +D
Sbjct: 519 TLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKD 578

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI+P  +HY CM+D+L R+G L EA  ++ +MP +P+A +WG LL ACR H  VE+ E+
Sbjct: 579 YGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQ 638

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             +  ++L+  + G Y  LS I+AA G W  VA +R  MK+   +K  G S +EV  EVH
Sbjct: 639 AAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVH 698

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F   DQ HP++E+IY  +  L K +K +G+
Sbjct: 699 SFVAGDQSHPRTEEIYSELEALTKQIKSLGY 729



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 160/614 (26%), Positives = 280/614 (45%), Gaps = 67/614 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ+  K K+L   KQ+   I++  ++ + YI   L+     C  +  A ++F+   +  V
Sbjct: 51  LQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSV 110

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N +I       L  +AF +F  MQ++G+  D FT+  +L AC+     +  + +H  
Sbjct: 111 VSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGREVHVR 170

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G   +  V N+LI  Y+KCG   V  A+++F +M  RD VSW ++     + G   
Sbjct: 171 VMEAGLANNATVGNALISMYAKCG--SVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQ 228

Query: 201 EARRLFDEM------PERDAVSWNTILDGYAKAGEM----NLAFELFEKIPHRNIVSWST 250
           E+ + +  M      P R  +++  +L        +     +  ++ E   H ++   + 
Sbjct: 229 ESLKTYHAMLQEGVRPSR--ITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           +   Y K G ++ A+ +F+ +P + ++ W  +I G  + G  +EA  ++ +M +  + PD
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPD 346

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T ++IL+ACA  G L  G ++HA   K     +    NAL++MY+K GS+ +A  VF+
Sbjct: 347 RVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 406

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT------- 423
            M K+D+VSW A++ G A  GQ  ++   F +M  +G   +K T++ VL AC+       
Sbjct: 407 RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKW 466

Query: 424 ----HAGFIDKGV------------QYFYSMERDYGI-------LPQVEHYGCMIDLLGR 460
               HA  +  G+             YF     +  I          V  +  +I  L +
Sbjct: 467 GKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQ 526

Query: 461 SGRLKEALRLVQSMPVE---PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-- 515
           +GR  EAL+  + M  E   PNA  +  ++ ACR  N VE        + +  G  P   
Sbjct: 527 NGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEK 586

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA------------SSVEVDNEVHEF 563
           +Y  + +I A  G   +  +V L M      KPS A             +VE+  +  E 
Sbjct: 587 HYACMVDILARAGHLGEAEDVILTMPF----KPSAAMWGALLAACRAHGNVEIGEQAAE- 641

Query: 564 SVCDQLHPKSEQIY 577
             C +L P++   Y
Sbjct: 642 -QCLKLEPQNAGTY 654



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 114/391 (29%), Positives = 203/391 (51%), Gaps = 12/391 (3%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           + +KG   D++ Y  LL++C       + + +H  I + G   ++++ N+L+  Y  CG 
Sbjct: 35  LHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCG- 93

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL 221
             V+ A++LF     + +VSWN MI+G    G   EA  LF  M     E D  ++ +IL
Sbjct: 94  -SVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSIL 152

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWST----MVWGYSKDGDMEMAKLLFDRMPAKTLV 277
              +    +N   E+  ++    + + +T    ++  Y+K G +  A+ +FD M ++  V
Sbjct: 153 SACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEV 212

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +   YAE G A+E+ + Y  M + G++P   T +++L+AC     L  G ++HA I
Sbjct: 213 SWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQI 272

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            +     +  V  AL  MY KCG++ +A  VF  +  +D+++WN M+ GL   GQ E+A 
Sbjct: 273 VESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAH 332

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
           G+F RM  E   PD+ T++ +L AC   G +  G +      +D G++  V     +I++
Sbjct: 333 GMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINM 391

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
             ++G +K+A ++   MP + + + W  L+G
Sbjct: 392 YSKAGSMKDARQVFDRMP-KRDVVSWTALVG 421



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 120/233 (51%), Gaps = 4/233 (1%)

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
           A +   + + G + D    + +L +C ++  L +G +VH  I ++  K N  + N L+ +
Sbjct: 29  ADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKL 88

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y  CGS++ A  +F+  + K +VSWN M+ G A  G G++A  LF+ M+ EG  PDK+TF
Sbjct: 89  YVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTF 148

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           V +L AC+    ++ G +    +  + G+         +I +  + G +++A R+  +M 
Sbjct: 149 VSILSACSSPAALNWGREVHVRV-MEAGLANNATVGNALISMYAKCGSVRDARRVFDAM- 206

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
              + + W TL GA  +    + + +    +++ +G  P   T + N+ +A G
Sbjct: 207 ASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQ-EGVRPSRITYM-NVLSACG 257


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 322/589 (54%), Gaps = 49/589 (8%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS---LALCRQMGLAIKVFN----D 74
           ++L  CK LNQ KQL  QI K  L + P    KL+++   +A    +  A K F     D
Sbjct: 30  ESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKED 89

Query: 75  IQDPD-VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           ++  D + + N+LIR      L  +A  +++ M   GV  +++T+PF+L  C     F  
Sbjct: 90  VRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE 149

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +H  + K G   D+F+ N LI  Y++CG                             
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECG----------------------------- 180

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                +    ++F+ M ER+ VSW +++ GYA+      A  LF ++ ++ +V+   +V 
Sbjct: 181 ----HMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMLNKVMVN--ALVD 234

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y K G ++ AK LFD    + LV +  I+S YA +G+A+EA  + D+M + G +PD  T
Sbjct: 235 MYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVT 294

Query: 314 LISILAACAE-----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           ++S ++A A+      G +  G  VH  I K    C+  +  ALVDM+A+CG   +AM V
Sbjct: 295 MLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQV 354

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           FN MT++D+ +W A +  +AM G GE A GLF++M  +G  PD   FV VL AC+H G +
Sbjct: 355 FNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQV 414

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           ++G+  F  ME D+GI PQ+EHYGCM+DLLGR+G L+EA  L++SMP+EPN ++WG+LL 
Sbjct: 415 EQGLHIFSLME-DHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLA 473

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACR H  VE+A    + +  L     G + +LSNI+A+ G W  VA VRL +++   +K 
Sbjct: 474 ACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKV 533

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            G+SSV+V+  +HEF+  D+ HP+   I  M+  +       GH   LS
Sbjct: 534 PGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLS 582


>gi|354805230|gb|AER41645.1| CRR4 [Oryza punctata]
          Length = 632

 Score =  366 bits (940), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 185/516 (35%), Positives = 290/516 (56%), Gaps = 35/516 (6%)

Query: 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
           ++ M+ +GV  + FT+ FLL+AC           +H  I +CG+  D+FV N+L+D Y +
Sbjct: 98  YVAMRAQGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYYR 157

Query: 163 C---------------------------GVVGVSL-------AKKLFMSMGERDIVSWNS 188
           C                            +VGV +       A  LF +M ER++VSWN+
Sbjct: 158 CGGGGAGGVGAARQVFDEMVDKDVVSWNSIVGVYMSSGDATGAMGLFEAMPERNVVSWNT 217

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
           ++AG  + G++  AR +FD MP R+AVSWN ++ GYA +G++  A  +F+++  +++VSW
Sbjct: 218 VVAGFARTGDMVTARTVFDRMPSRNAVSWNLMISGYATSGDVEAARSVFDRMDQKDVVSW 277

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD-QMEEAGL 307
           + MV  Y+K GD++ AK LFD MP K LV W  +I+GY       EA R +   M E   
Sbjct: 278 TAMVSAYAKIGDLDTAKELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRF 337

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PD+ TL+S+++ACA+ G +     + + I K        + NAL+DM+AKCG +  A S
Sbjct: 338 RPDEATLVSVVSACAQLGSVEYCNWISSFIGKSNTHLTVALGNALIDMFAKCGDVGRAQS 397

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           +F  M  + +++W  M+ G A +G   +AL +++ M  EG   D   F+  L ACTH G 
Sbjct: 398 IFYKMETRCIITWTTMISGFAFNGLCREALLVYNNMCREGVELDGTVFIAALAACTHGGL 457

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           + +G   F  M   Y I P++EHYGC++DLLGR+G L+EA+  ++SMP+EP+ +IW TLL
Sbjct: 458 LQEGWSIFNEMVEQYNIQPRMEHYGCVVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLL 517

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
            +C  H   EL E V   +  L+  +     ++SN  A  G W+ V   R  M+    +K
Sbjct: 518 SSCVAHGNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIGARTSMRNWGIEK 577

Query: 548 PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
             G+S ++V +EVHEF   D  H + ++IY+ ++ L
Sbjct: 578 VPGSSLIQVGSEVHEFLAKDTRHERRKEIYETVDGL 613


>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
           Japonica Group]
          Length = 545

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 304/538 (56%), Gaps = 41/538 (7%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +C++L   KQ+ A +       DP    +L+  S++A+   +  A  VF+ I  PD  +Y
Sbjct: 17  RCRSLRHIKQMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMY 76

Query: 84  NTLIRACVQNSLNAQAFRVFLDM----QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           NTLIR     +    A  ++  M       GV  D  T+PF+L+AC           +HA
Sbjct: 77  NTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHA 136

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   D FV N+LI  ++ CG +G++ A                            
Sbjct: 137 HVVKAGCESDAFVKNALIGMHASCGNLGIAAA---------------------------- 168

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
                LFD     DAV+W+ ++ G A+ G++  A +LF++ P +++VSW+ M+  Y+K G
Sbjct: 169 -----LFDGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRG 223

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           DM +A+ LFD++P + +V W ++ISGY   G    A  L++QM+  G KPD  T++S+L+
Sbjct: 224 DMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLS 283

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ACA+SG L +G ++H+S++    +    V   NAL+DMYAKCGS+ +A  VF  M  KD+
Sbjct: 284 ACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDV 343

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
            +WN+++ GLA+HG   +++ +F +M      PD+ TFV VL AC+H G +DKG ++F  
Sbjct: 344 STWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNL 403

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M+  Y + P ++HYGCM+D+LGR+G LKEA   + +M  EPN++IW TLL ACR H  +E
Sbjct: 404 MQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIE 463

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           LA+     L++ +  + G+Y +LSNI+A+ G+W     +R  M  +   K +G + V+
Sbjct: 464 LAKHANRQLLKARNDESGDYVLLSNIYASVGEWFGSEKMRKLMDDSGVNKEAGQTFVD 521


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/407 (42%), Positives = 259/407 (63%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A+  F  M  +D  SWN+MI G  +  ++ +AR LF  MP ++ V+WN ++ GY + G++
Sbjct: 57  AQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDL 116

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + A +LFEK P +++V+W+ M+ GY K G + +A+ LF++MP K LV W  +I+GY E  
Sbjct: 117 DSALKLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENH 176

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
            A++  +L+  M   G++P+  TL S L  C+E   L LG +VH  + K     +T    
Sbjct: 177 RAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGT 236

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+ MY KCG L++   +F  + ++D+V+WNAM+ G A HG+G+KALGLF  M ++G  P
Sbjct: 237 SLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKP 296

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TFV VL AC HAGF D GV+YF+SM +DYG++ + +HY CM+DLLGR+G+L EA+ L
Sbjct: 297 DWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDL 356

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++ MP +P+A ++GTLLGACR H   E+AE     L+ L  +    Y  L+N++AAT  W
Sbjct: 357 IEKMPFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRW 416

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           + VA VR  MK  +  K  G S +EV +  H+F   D+ HP+   I+
Sbjct: 417 DHVARVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIH 463



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 168/408 (41%), Gaps = 86/408 (21%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L + ++LF +I     + D      ++S       M  A   F D+   D   +NT+I  
Sbjct: 23  LKEAQELFVKIP----EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITG 78

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN    +A  +FL M  K V T                W                   
Sbjct: 79  FAQNQQMDKARDLFLIMPTKNVVT----------------W------------------- 103

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
               N++I  Y +CG +  +L  KLF     + +V+W +MI G +K G +  A RLF++M
Sbjct: 104 ----NAMISGYVECGDLDSAL--KLFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKM 157

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVS---------------- 247
           PE++ V+WN ++ GY +        +LF  +      P+ + +S                
Sbjct: 158 PEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGR 217

Query: 248 -----------------WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
                             ++++  Y K G +E    LF ++P + +V W  +ISGYA+ G
Sbjct: 218 QVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHG 277

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVC 349
             K+A  L+D+M E G+KPD  T +++L AC  +G   LG+K  H+    Y      +  
Sbjct: 278 EGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHY 337

Query: 350 NALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA 396
             +VD+  + G L  A+ +   M  K     +  +L    +H   E A
Sbjct: 338 TCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMA 385


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/581 (35%), Positives = 313/581 (53%), Gaps = 13/581 (2%)

Query: 27  CKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C  L+ ++   QL    +K D   D  +    +   A C  M  A K+F+ + D ++  Y
Sbjct: 268 CAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSY 327

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    +N    QAF++FL +Q+     D  +    L A            +H L  K
Sbjct: 328 NAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIK 387

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL----VKGGEL 199
                +I V N+++D Y KCG   +  A  LF  M  RD VSWN++I        +G  L
Sbjct: 388 SNLSSNICVANAILDMYGKCG--ALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTL 445

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGY 255
           S    +     E D  ++ ++L   A     +   E+  +I        +   S +V  Y
Sbjct: 446 SHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMY 505

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           SK G ME A+ +  R+  +T+V W  IISG++ +  ++++ R +  M E G++PD+ T  
Sbjct: 506 SKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYA 565

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           ++L  CA    +GLG ++HA + K     +  + + LVDMY+KCG++ +++ +F    K+
Sbjct: 566 TVLDTCANLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKR 625

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D V+WNAM+ G A HG GE+AL LF  M  E   P+  TFV VL AC+H G   KG+ YF
Sbjct: 626 DSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYF 685

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   Y + PQ+EHY CM+D+LGRSG+++EALRL+Q MP E +AIIW TLL  C+    
Sbjct: 686 QKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGN 745

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           VE+AE+    L++L   D   YT+LSNI+A  G W +V+ +R  M+    +K  G S +E
Sbjct: 746 VEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKIRQTMRSHNLKKEPGCSWIE 805

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           V +EVH F VCD+ HPK E IY +++ L  D++  G A ++
Sbjct: 806 VKDEVHTFLVCDKAHPKCEMIYSLLDLLICDMRRSGCAPEI 846



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 148/631 (23%), Positives = 263/631 (41%), Gaps = 123/631 (19%)

Query: 7   APTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66
            PT F    L++  +    KC  L    ++F ++     QRD      ++   A   +M 
Sbjct: 56  TPTVFVTNCLIQMYV----KCCALEYAYKVFEEMP----QRDIVSWNTMVFGCAGAGRME 107

Query: 67  LAIKVFNDI-QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           LA  VFN +    DV  +N+LI   +QN    ++  VFL M++ GV  D+ T    LK C
Sbjct: 108 LAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAVSLKIC 167

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           +      L   IH +  + G+  D+   ++L+D Y+KC  +  SL   +F  + +++ +S
Sbjct: 168 SLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSL--DVFSELPDKNWIS 225

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPER--------------------------------- 212
           W++ IAG V+  +L    +LF EM  +                                 
Sbjct: 226 WSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHAL 285

Query: 213 ------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG------- 259
                 D +     LD YAK   M+ A++LF  +P  N+ S++ M+ GY+++        
Sbjct: 286 KTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFK 345

Query: 260 ---DMEMAKLLFDRMPAKTLVPWTIIISGYAEK--------------------------- 289
               ++     FD +     +    +I G++E                            
Sbjct: 346 LFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVANAILDMYG 405

Query: 290 --GMAKEAARLYDQME-------------------------------EAGLKPDDGTLIS 316
             G   EA+ L+D+ME                                + ++PD+ T  S
Sbjct: 406 KCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGS 465

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L ACA       GM+VH  I K        V +ALVDMY+KCG ++ A  +   + ++ 
Sbjct: 466 VLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQT 525

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSWNA++ G ++  + E +   FS M + G  PD +T+  VL  C +   +  G Q   
Sbjct: 526 MVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCANLATVGLGKQIHA 585

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M +   +L  V     ++D+  + G + ++L + +  P + +++ W  ++     H   
Sbjct: 586 QMIK-LELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAP-KRDSVTWNAMICGFAYHGLG 643

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           E A E+ + ++  +   P + T +S + A +
Sbjct: 644 EEALELFEHMLH-ENIKPNHATFVSVLRACS 673



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 202/452 (44%), Gaps = 45/452 (9%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T+  + + C+ +      +  HA +   G+   +FV N LI  Y KC    +  A K+F 
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKC--CALEYAYKVFE 83

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-DAVSWNTILDGYAKAGEMNLAFE 235
            M +RDIVSWN+M+ G    G +  A+ +F+ MP   D VSWN+++ GY + G++  +  
Sbjct: 84  EMPQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIA 143

Query: 236 LFEKIPH---------------------------------------RNIVSWSTMVWGYS 256
           +F K+                                          ++V+ S +V  Y+
Sbjct: 144 VFLKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYA 203

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K   +E +  +F  +P K  + W+  I+G  +        +L+ +M+  G+     T  S
Sbjct: 204 KCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYAS 263

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +  +CA      LG ++H    K  F  +  V  A +DMYAKC ++ +A  +F+ +   +
Sbjct: 264 VFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHN 323

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L S+NAM+ G A + QG +A  LF +++   F  D+ +  G L A        +G+Q  +
Sbjct: 324 LQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQ-LH 382

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            +     +   +     ++D+ G+ G L EA  L   M +  + + W  ++ AC ++ + 
Sbjct: 383 GLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIR-DPVSWNAIITACEQNESE 441

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
                    ++R K  +P  +T  S + A  G
Sbjct: 442 GKTLSHFGAMLRSK-MEPDEFTYGSVLKACAG 472


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 325/620 (52%), Gaps = 49/620 (7%)

Query: 21  LQNLHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L  L  C N   L + +++   +    ++ D  +A  LI+  + C ++ LA ++F  +++
Sbjct: 183 LSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKE 242

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
            +V  +  +I+A  Q+    +AF ++  M + G+  +  T+  LL +CN     +  + I
Sbjct: 243 RNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRI 302

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H+ I + G   D+ V N+LI  Y KC  +    A++ F  M +RD++SW++MIAG  + G
Sbjct: 303 HSHISERGLETDVVVANALITMYCKCNCI--QDARETFDRMSKRDVISWSAMIAGYAQSG 360

Query: 198 ----------------------------------------ELSEARRLFDEMP----ERD 213
                                                    L + R++  E+     E D
Sbjct: 361 YQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESD 420

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
                 I + YAK G +  A ++F K+ ++N+V+W++++  Y K GD+  A+ +F  M  
Sbjct: 421 RSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMST 480

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           + +V W ++I+GYA+ G   +   L   M+  G +PD  T+ISIL AC     L  G  V
Sbjct: 481 RNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLV 540

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           HA   K   + +T V  +L+ MY+KCG +  A +VF+ ++ +D V+WNAML G   HG G
Sbjct: 541 HAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIG 600

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
            +A+ LF RM  E   P++ TF  V+ AC  AG + +G + F  M+ D+ + P  +HYGC
Sbjct: 601 PEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGC 660

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+DLLGR+GRL+EA   +Q MP EP+  +W  LLGAC+ H+ V+LAE     ++RL+ S+
Sbjct: 661 MVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSN 720

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
              Y  LSNI+A  G W+    VR  M     +K  G SS+E+D  +H F   D  HP+ 
Sbjct: 721 ASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEI 780

Query: 574 EQIYQMINTLGKDLKPVGHA 593
           + I+  +  L K++K  G+ 
Sbjct: 781 DSIHAELEMLTKEMKEAGYT 800



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 149/553 (26%), Positives = 263/553 (47%), Gaps = 52/553 (9%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +++  K +     K +  Q+ +L L  D Y+   LI+  +    +    +VF  +   DV
Sbjct: 85  IEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDV 144

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++++I A   N+  A+AF  F  M++  +  +  T+  +LKACN  +     + IH +
Sbjct: 145 VTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTV 204

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +   G   D+ V  +LI  YSKCG   +SLA ++F  M ER++VSW ++I    +  +L+
Sbjct: 205 VKASGMETDVAVATALITMYSKCG--EISLACEIFQKMKERNVVSWTAIIQANAQHRKLN 262

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMV 252
           EA  L+++M +     +AV++ ++L+       +N    +   I  R    ++V  + ++
Sbjct: 263 EAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALI 322

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK-----EAARLYDQMEEAGL 307
             Y K   ++ A+  FDRM  + ++ W+ +I+GYA+ G        E  +L ++M   G+
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGV 382

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS------ 361
            P+  T +SIL AC+  G L  G ++HA I+K  F+ + ++  A+ +MYAKCGS      
Sbjct: 383 FPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQ 442

Query: 362 -------------------------LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
                                    L +A  VF+ M+ +++VSWN M+ G A  G   K 
Sbjct: 443 VFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKV 502

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
             L S MK EGF PD+ T + +L AC     +++G +  ++     G+         +I 
Sbjct: 503 FELLSSMKVEGFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIG 561

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR-LKGSDPG 515
           +  + G + EA R V       + + W  +L    +H    +  E +D   R LK   P 
Sbjct: 562 MYSKCGEVTEA-RTVFDKISNRDTVAWNAMLAGYGQHG---IGPEAVDLFKRMLKERVPP 617

Query: 516 NYTMLSNIFAATG 528
           N    + + +A G
Sbjct: 618 NEITFTAVISACG 630



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 128/498 (25%), Positives = 224/498 (44%), Gaps = 83/498 (16%)

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           R C    L  +A ++   ++++G+  ++ TY  +++ C     F   +M+H  + + G  
Sbjct: 52  RLCKAGRLK-EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLA 110

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            DI++ NSLI+ YSK G   V+  +++F  M  RD+V+W+SMIA        ++A   F+
Sbjct: 111 IDIYLGNSLINFYSKFG--DVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFE 168

Query: 208 EMP---------------------------------------ERDAVSWNTILDGYAKAG 228
            M                                        E D      ++  Y+K G
Sbjct: 169 RMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCG 228

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
           E++LA E+F+K+  RN+VSW                               T II   A+
Sbjct: 229 EISLACEIFQKMKERNVVSW-------------------------------TAIIQANAQ 257

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
                EA  LY++M +AG+ P+  T +S+L +C     L  G ++H+ I++   + +  V
Sbjct: 258 HRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVV 317

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK-----ALGLFSRM 403
            NAL+ MY KC  + +A   F+ M+K+D++SW+AM+ G A  G  +K        L  RM
Sbjct: 318 ANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERM 377

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           + EG  P+K TF+ +L AC+  G +++G Q    + +  G          + ++  + G 
Sbjct: 378 RREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISK-VGFESDRSLQTAIFNMYAKCGS 436

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           + EA ++   M    N + W +LL    K   +  AE+V      +   +  ++ ++   
Sbjct: 437 IYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAEKVFS---EMSTRNVVSWNLMIAG 492

Query: 524 FAATGDWNKVANVRLQMK 541
           +A +GD  KV  +   MK
Sbjct: 493 YAQSGDIAKVFELLSSMK 510



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/426 (24%), Positives = 191/426 (44%), Gaps = 68/426 (15%)

Query: 175 FMSMGERDIVSWNSMIAG----LVKGGELSEARRLFDEMPER----DAVSWNTILDGYAK 226
           F S GE ++    S+  G    L K G L EA +L   + +R    ++ ++  I++  AK
Sbjct: 32  FASTGE-ELAGPRSVSGGEVWRLCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAK 90

Query: 227 AGEMNLAFELFE--KIPHR---------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
                     FE  K+ H+         +I   ++++  YSK GD+   + +F RM  + 
Sbjct: 91  -------LRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRD 143

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V W+ +I+ YA      +A   +++M++A ++P+  T +SIL AC    +L    ++H 
Sbjct: 144 VVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHT 203

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            +     + +  V  AL+ MY+KCG +  A  +F  M ++++VSW A++   A H +  +
Sbjct: 204 VVKASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNE 263

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE------ 449
           A  L+ +M   G  P+  TFV +L +C     +++G +  +S   + G+   V       
Sbjct: 264 AFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNRG-RRIHSHISERGLETDVVVANALI 322

Query: 450 -------------------------HYGCMIDLLGRSG-----RLKEALRLVQSMPVE-- 477
                                     +  MI    +SG      L E  +L++ M  E  
Sbjct: 323 TMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGV 382

Query: 478 -PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-GSDPGNYTMLSNIFAATGDWNKVAN 535
            PN + + ++L AC  H A+E   ++   + ++   SD    T + N++A  G   +   
Sbjct: 383 FPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQ 442

Query: 536 VRLQMK 541
           V  +M+
Sbjct: 443 VFSKME 448


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  365 bits (937), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 193/495 (38%), Positives = 281/495 (56%), Gaps = 10/495 (2%)

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I  CV++     A RVF  M+ K   T N     L+      +       +   I +
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWN---SLLIGISKDPSRMMEAHQLFDEIPE 121

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                D F  N ++  Y +   V    A+  F  M  +D  SWN+MI G  + GE+ +AR
Sbjct: 122 ----PDTFSYNIMLSCYVRN--VNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAR 175

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            LF  M E++ VSWN ++ GY + G++  A   F+  P R +V+W+ M+ GY K   +E+
Sbjct: 176 ELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVEL 235

Query: 264 AKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           A+ +F  M   K LV W  +ISGY E    ++  +L+  M E G++P+   L S L  C+
Sbjct: 236 AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCS 295

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           E   L LG ++H  ++K     +     +L+ MY KCG L +A  +F  M KKD+V+WNA
Sbjct: 296 ELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNA 355

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG  +KAL LF  M D    PD  TFV VL AC HAG ++ G+ YF SM RDY
Sbjct: 356 MISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDY 415

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            + PQ +HY CM+DLLGR+G+L+EAL+L++SMP  P+A ++GTLLGACR H  VELAE  
Sbjct: 416 KVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFA 475

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + L++L   +   Y  L+NI+A+   W  VA VR +MK++   K  G S +E+ N+VH 
Sbjct: 476 AEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHH 535

Query: 563 FSVCDQLHPKSEQIY 577
           F   D++HP+ + I+
Sbjct: 536 FRSSDRIHPELDSIH 550



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 16/259 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPDVHLYN 84
           +C +L +    F    K+   R       +I+     +++ LA  +F D+  + ++  +N
Sbjct: 198 ECGDLEKASHFF----KVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWN 253

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
            +I   V+NS      ++F  M E+G+  ++      L  C+  +   L + IH ++ K 
Sbjct: 254 AMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS 313

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
               D+    SLI  Y KCG +G   A KLF  M ++D+V+WN+MI+G  + G   +A  
Sbjct: 314 TLCNDVTALTSLISMYCKCGELGD--AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALC 371

Query: 205 LFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGY 255
           LF EM +     D +++  +L     AG +N+    FE +     V      ++ MV   
Sbjct: 372 LFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLL 431

Query: 256 SKDGDMEMAKLLFDRMPAK 274
            + G +E A  L   MP +
Sbjct: 432 GRAGKLEEALKLIRSMPFR 450


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 202/613 (32%), Positives = 330/613 (53%), Gaps = 42/613 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-D 79
           L+ L  CK+LN  KQL A I++  +          +S  +    +  A+ VF+ I  P +
Sbjct: 16  LEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLSYALNVFSSIPSPPE 75

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             ++N  +R   ++S        +  ++  G   D F++  +LKA +  +       +H 
Sbjct: 76  SIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGMELHG 135

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           + +K     D FV    +D Y+ CG   ++ A+ +F  M  RD+V+WN+MI    + G +
Sbjct: 136 VAFKIATLCDPFVETGFMDMYASCG--RINYARNVFDEMSHRDVVTWNTMIERYCRFGLV 193

Query: 200 SEARRLFDEMPERDAVSWNTILDG------------------------------------ 223
            EA +LF+EM + + +    IL                                      
Sbjct: 194 DEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTAL 253

Query: 224 ---YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
              YA AG M++A E F K+  RN+   + MV GYSK G ++ A+++FD+   K LV WT
Sbjct: 254 VTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWT 313

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +IS Y E    +EA R++++M  +G+KPD  ++ S+++ACA  G+L     VH+ I+  
Sbjct: 314 TMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVN 373

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             +   ++ NAL++MYAKCG LD    VF  M ++++VSW++M+  L+MHG+   AL LF
Sbjct: 374 GLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLF 433

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           +RMK E   P++ TFVGVL  C+H+G +++G + F SM  +Y I P++EHYGCM+DL GR
Sbjct: 434 ARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGR 493

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +  L+EAL +++SMPV  N +IWG+L+ ACR H  +EL +     ++ L+    G   ++
Sbjct: 494 ANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLM 553

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SNI+A    W  V N+R  M++    K  G S ++ + + HEF + D+ H +S +IY  +
Sbjct: 554 SNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKL 613

Query: 581 NTLGKDLKPVGHA 593
           + +   LK  G+ 
Sbjct: 614 DEVVSKLKLAGYV 626


>gi|15227199|ref|NP_179827.1| protein slow growth 1 [Arabidopsis thaliana]
 gi|75206347|sp|Q9SJZ3.1|PP169_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g22410, mitochondrial; Flags: Precursor
 gi|4544450|gb|AAD22358.1| hypothetical protein [Arabidopsis thaliana]
 gi|18086349|gb|AAL57637.1| At2g22410/F14M13.19 [Arabidopsis thaliana]
 gi|309260071|gb|ADO62711.1| SLOW GROWTH1 [Arabidopsis thaliana]
 gi|330252206|gb|AEC07300.1| protein slow growth 1 [Arabidopsis thaliana]
          Length = 681

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 207/612 (33%), Positives = 328/612 (53%), Gaps = 46/612 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIKVFNDIQDP 78
           L  L KCK L   KQ+ AQ+I   L  DP+ + +LI+  AL   R +  ++K+   I++P
Sbjct: 57  LSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENP 116

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT---DNFTYPFLLKACNGKNWFHLVQ 135
           ++  +N  IR   ++    ++F ++  M   G      D+FTYP L K C       L  
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           MI   + K        V N+ I  ++ CG   +  A+K+F     RD+VSWN +I G  K
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCG--DMENARKVFDESPVRDLVSWNCLINGYKK 234

Query: 196 GGELSEARRLFDEMPER----DAVSW---------------------------------- 217
            GE  +A  ++  M       D V+                                   
Sbjct: 235 IGEAEKAIYVYKLMESEGVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPL 294

Query: 218 -NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
            N ++D ++K G+++ A  +F+ +  R IVSW+TM+ GY++ G +++++ LFD M  K +
Sbjct: 295 VNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDV 354

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W  +I G  +    ++A  L+ +M+ +  KPD+ T+I  L+AC++ G L +G+ +H  
Sbjct: 355 VLWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRY 414

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I KY    N  +  +LVDMYAKCG++  A+SVF+G+  ++ +++ A++ GLA+HG    A
Sbjct: 415 IEKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTA 474

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           +  F+ M D G  PD+ TF+G+L AC H G I  G  YF  M+  + + PQ++HY  M+D
Sbjct: 475 ISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVD 534

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+G L+EA RL++SMP+E +A +WG LL  CR H  VEL E+    L+ L  SD G 
Sbjct: 535 LLGRAGLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGI 594

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y +L  ++     W      R  M +   +K  G SS+EV+  V EF V D+  P+SE+I
Sbjct: 595 YVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESEKI 654

Query: 577 YQMINTLGKDLK 588
           Y  ++ LG+ ++
Sbjct: 655 YDRLHCLGRHMR 666


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 206/616 (33%), Positives = 335/616 (54%), Gaps = 46/616 (7%)

Query: 8   PTWFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM 65
           P W S   ++     L  +  C  + Q KQ+ A++    +    +   ++I+  AL    
Sbjct: 146 PKWNSPTNVIITNPTLLIMESCSTMRQLKQIQARMTLTGIITHAFPVSRVIAFCALAHSG 205

Query: 66  GL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
            L  A  +FN ++ P+  ++NT+IR          AF  F+ M +  V  D+ ++ F LK
Sbjct: 206 DLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFVFALK 265

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC         + ++ +++K G+  ++ V N LI  Y++ G++    A+++F    ++D+
Sbjct: 266 ACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLL--KNARQVFDESSDKDV 323

Query: 184 VSWNSMIAGLVKG-----------------------------------GELSEARRLFDE 208
           V+W +MI G                                       G L   +R+ ++
Sbjct: 324 VTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSACSDMGNLEMGKRVHEK 383

Query: 209 MPERDAVS----WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           + E++        N +LD Y K   +  A ELF+++  +++ SW++MV GY+K GD+E A
Sbjct: 384 VEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTSMVNGYAKCGDLESA 443

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           +  FD+ P K  V W+ +I+GY++    KE+ +L+ +M E G+ P + TL+S+L+AC + 
Sbjct: 444 RRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPIEHTLVSVLSACGQL 503

Query: 325 GLLGLGMKVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
             L LG  +H      +    +  + NA+VDMYAKCGS+D A  VF+ M +++L+SWN M
Sbjct: 504 TCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVFSTMPERNLISWNTM 563

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G A +G+ ++A+ +F +M++ GF P+  TFV +L AC+H G I +G +YF +MER YG
Sbjct: 564 IAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLISEGREYFDNMERKYG 623

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P+  HY CM+DLLGR+G L+EA +L+ +MP++P    WG LL ACR H  VELA    
Sbjct: 624 IKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNACRMHGNVELARLSA 683

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L+RL   D G Y +L+N  A    W+ V  VR  MK    +K  G S +E+D    EF
Sbjct: 684 HNLLRLDPEDSGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKIPGYSLIEIDGGFVEF 743

Query: 564 SVCDQLHPKSEQIYQM 579
            V D+ HP+SE+IY++
Sbjct: 744 LVADESHPQSEEIYKL 759


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  365 bits (936), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 330/580 (56%), Gaps = 17/580 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L    Q++ Q+I   L +  ++  K I++      +  A K F ++ +PD+ L+N +I+ 
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q ++     R+++DMQ   V  + FT+ ++LKAC G +   + + IH   +K G+  +
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSN 134

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +FV NSL+  Y+K G   +S A+ +F  + +R +VSW S+I+G V+ G+  EA  +F EM
Sbjct: 135 VFVQNSLVSMYAKFG--QISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEM 192

Query: 210 PE----RDAVSWNTILDGYAKAGEMN-------LAFELFEKIPHRNIVSWSTMVWGYSKD 258
            +     D ++  +++  Y    ++        L  +L  +     ++S +TM   Y+K 
Sbjct: 193 RQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM---YAKR 249

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +E+A+  F+RM    L+ W  +ISGYA  G  +EA +L+ +M    ++ D  T+ S +
Sbjct: 250 GLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAV 309

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            A A+ G L L   +   I+K  ++ +T V   L+DMYAKCGS+  A  VF+ +  KD+V
Sbjct: 310 LASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVV 369

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            W+ M+ G  +HG G++A+ L++ MK  G  P+  TF+G+L AC ++G + +G + F+ M
Sbjct: 370 LWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLM 429

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             D+GI P  +HY C++DLLGR+G L +A   + SMP++P   +WG LL AC+ H  V L
Sbjct: 430 P-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRL 488

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E   + L  L   + G+Y  LSN++A+   W +VANVRL M +    K  G SS+E++ 
Sbjct: 489 GEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEING 548

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            +  F V D+ HPKS++I++ ++ L K LK  G+   + +
Sbjct: 549 NLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMES 588



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L Q K +   + KL L+ +P I   L +  A    + +A   FN ++ P++ L+N +I
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 274

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
                N    +A ++F +M  K +  D+ T    + A        L + +   I K  Y 
Sbjct: 275 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 334

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D FV   LID Y+KCG   + LA+ +F  + ++D+V W+ MI G    G   EA  L++
Sbjct: 335 DDTFVNTGLIDMYAKCG--SIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 392

Query: 208 EMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDG 259
           EM +        ++  +L     +G +   +ELF  +P   I      +S +V    + G
Sbjct: 393 EMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAG 452

Query: 260 DMEMAKLLFDRMPAKTLVP-WTIIISG 285
            +  A      MP K  V  W  ++S 
Sbjct: 453 YLNQAYDFIMSMPIKPGVSVWGALLSA 479


>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
          Length = 421

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 171/408 (41%), Positives = 263/408 (64%), Gaps = 2/408 (0%)

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M E+++V W SMI G +   +L  ARR FD  PERD V WNT++ GY + G M  A  LF
Sbjct: 1   MVEKNVVLWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMISGYIEMGNMLEARSLF 60

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           +++P R+++SW+T++ GY+  GDME  + +FD MP + +  W  +I GYA+ G   E   
Sbjct: 61  DQMPCRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLG 120

Query: 298 LYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF-KCNTNVCNALVDM 355
            + +M +E  + P+D T+  +L+ACA+ G    G  VH       + K + NV NAL+DM
Sbjct: 121 SFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYNKVDVNVKNALIDM 180

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y KCG+++ AM VF G+ ++DL+SWN M+ GLA HG G +AL LF  MK+ G  PDK TF
Sbjct: 181 YGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLFHEMKNSGISPDKVTF 240

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           VGVLCAC H G ++ G+ YF SM  D+ I+P++EH GC++DLL R+G L +A+  +  MP
Sbjct: 241 VGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSRAGFLTQAVEFINKMP 300

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           V+ +A+IW TLLGA + +  V++ E  L+ LI+L+  +P N+ MLSNI+   G ++  A 
Sbjct: 301 VKADAVIWATLLGASKVYKKVDIGEVALEELIKLEPRNPANFVMLSNIYGDAGRFDDAAR 360

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +++ M+ T  +K +G S +E D+ + +F    + HP++E++ +++  L
Sbjct: 361 LKVAMRDTGFKKEAGVSWIETDDGLVKFYSSGEKHPRTEELQRILREL 408



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 58/334 (17%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+ + + LF Q+      RD      ++   A    M    +VF+D+ + +V  +N LI+
Sbjct: 52  NMLEARSLFDQMP----CRDVMSWNTVLEGYANIGDMEACERVFDDMPERNVFSWNGLIK 107

Query: 89  ACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              QN   ++    F  M ++G V  ++ T   +L AC     F   + +H      GY 
Sbjct: 108 GYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGKWVHKYGETLGYN 167

Query: 148 G-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D+ V N+LID Y KCG   + +A ++F  +  RD++SWN+MI GL   G  +EA  LF
Sbjct: 168 KVDVNVKNALIDMYGKCG--AIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALNLF 225

Query: 207 DEMPER----DAVSWNTIL----------DGYA--------------------------K 226
            EM       D V++  +L          DG A                          +
Sbjct: 226 HEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEIEHCGCVVDLLSR 285

Query: 227 AGEMNLAFELFEKIPHR-NIVSWSTMVWGYSK------DGDMEMAKLLFDRMPAKTLVPW 279
           AG +  A E   K+P + + V W+T++ G SK       G++ + +L+  ++  +    +
Sbjct: 286 AGFLTQAVEFINKMPVKADAVIWATLL-GASKVYKKVDIGEVALEELI--KLEPRNPANF 342

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            ++ + Y + G   +AARL   M + G K + G 
Sbjct: 343 VMLSNIYGDAGRFDDAARLKVAMRDTGFKKEAGV 376


>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 471

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 175/415 (42%), Positives = 264/415 (63%), Gaps = 2/415 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A K+F  M E+++V W SMI G +   +L  ARR FD  PERD V WNT++ GY + G M
Sbjct: 44  ANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFDLSPERDIVLWNTMVAGYIEMGNM 103

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
             A  LF+++P R+++SW+T++ GY+  GDME  + +FD M  + +  W  +I GYA+ G
Sbjct: 104 MEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIKGYAQNG 163

Query: 291 MAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF-KCNTNV 348
              E    + +M +E  + P+D TL  +L+ACA+ G    G +VH       + K + NV
Sbjct: 164 RVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNV 223

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            NAL+DMY KCG+++ AM VF G+ ++DL+SWN M+ GLA HG G +AL LF  MK+ G 
Sbjct: 224 KNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLFHEMKNCGI 283

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PDK TFVGVLCAC H G ++ G+ YF SM  D+ I PQ+EH GC++DLL R+G L +A+
Sbjct: 284 SPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAV 343

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             +  MPV+ +A+IW TLLGA + +  V+  E  L  LI+L+  +P N+ MLSNI+   G
Sbjct: 344 EFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVMLSNIYGDAG 403

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            ++  A +++ M+ T  +K +G S +E D+ + +F    + HP++E++ +++  L
Sbjct: 404 RFDDAARLKVAMRDTGFKKEAGISWIETDDGLVKFYSSGEKHPRTEELQRILGEL 458



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 145/330 (43%), Gaps = 52/330 (15%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+ + + LF Q+      RD      ++   A    M    +VF+++ + +V  +N LI+
Sbjct: 102 NMMEARSLFDQMP----CRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLIK 157

Query: 89  ACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              QN   ++    F  M ++G VF ++ T   +L AC     F   + +H      GY 
Sbjct: 158 GYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGYN 217

Query: 148 G-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D+ V N+LID Y KCG   + +A ++F  +  RD++SWN+MI GL   G  +EA  LF
Sbjct: 218 KVDVNVKNALIDMYGKCG--AIEIAMEVFKGIKRRDLISWNTMINGLAAHGHGTEALDLF 275

Query: 207 DEM------PER-----------------DAVSW-----------------NTILDGYAK 226
            EM      P++                 D +++                   ++D  ++
Sbjct: 276 HEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLSR 335

Query: 227 AGEMNLAFELFEKIPHR-NIVSWSTMVWG---YSKDGDMEMAKLLFDRMPAKTLVPWTII 282
           AG +  A E   K+P + + V W+T++     Y K    E+A     ++  +    + ++
Sbjct: 336 AGFLTQAVEFINKMPVKADAVIWATLLGASKVYKKVDTGELALKELIKLEPRNPANFVML 395

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + Y + G   +AARL   M + G K + G
Sbjct: 396 SNIYGDAGRFDDAARLKVAMRDTGFKKEAG 425



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/255 (27%), Positives = 118/255 (46%), Gaps = 20/255 (7%)

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILA 319
           M  A  +F  M  K +V WT +I+GY        A R +D      L P+ D  L + + 
Sbjct: 41  MVSANKVFCEMVEKNVVIWTSMINGYLLNKDLVSARRYFD------LSPERDIVLWNTMV 94

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVC-NALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           A    G + +G  + A     +  C   +  N +++ YA  G ++    VF+ M ++++ 
Sbjct: 95  A----GYIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVF 150

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQ-YFY 436
           SWN ++ G A +G+  + LG F RM DEG   P+  T   VL AC   G  D G + + Y
Sbjct: 151 SWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKY 210

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH--- 493
                Y  +  V     +ID+ G+ G ++ A+ + + +    + I W T++     H   
Sbjct: 211 GENLGYNKV-DVNVKNALIDMYGKCGAIEIAMEVFKGIK-RRDLISWNTMINGLAAHGHG 268

Query: 494 -NAVELAEEVLDCLI 507
             A++L  E+ +C I
Sbjct: 269 TEALDLFHEMKNCGI 283


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 206/591 (34%), Positives = 318/591 (53%), Gaps = 15/591 (2%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
              C  L+  K   QL    +K D   D  I    +   A C +M  A KVFN + +P  
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPR 305

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHA 139
             YN +I    +     +A  +F  +Q   +  D  +    L AC+  K     +Q+ H 
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQL-HG 364

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           L  KCG   +I V N+++D Y KCG   +  A  +F  M  RD VSWN++IA   +  E+
Sbjct: 365 LAVKCGLGFNICVANTILDMYGKCG--ALMEACLIFEEMERRDAVSWNAIIAAHEQNEEI 422

Query: 200 SEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSW---STM 251
            +   LF  M     E D  ++ +++   A    +N   E+  +I    + + W   S +
Sbjct: 423 VKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSAL 482

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y K G +  A+ +  R+  KT V W  IISG++ +  ++ A R + QM E G+ PD+
Sbjct: 483 VDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDN 542

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T  ++L  CA    + LG ++HA I K +   +  + + LVDMY+KCG++ ++  +F  
Sbjct: 543 YTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEK 602

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
             K+D V+W+AM+   A HG GEKA+ LF  M+     P+   F+ VL AC H G++DKG
Sbjct: 603 APKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKG 662

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           + YF  M   YG+ PQ+EHY CM+DLLGRSG++ EAL+L++SMP E + +IW TLL  C+
Sbjct: 663 LHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCK 722

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
               VE+AE+  + L++L   D   Y +L+N++A  G W +VA +R  MK  + +K  G 
Sbjct: 723 MQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGC 782

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           S +EV +EVH F V D+ HP+SE+IY+  + L  ++K  G+   +   + E
Sbjct: 783 SWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLLVDEMKWAGYVPDIDFMLDE 833



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 209/455 (45%), Gaps = 44/455 (9%)

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
           T   T+  +L+ C+     +  + +H  +   G+   I+V N L+  Y  C    ++ A 
Sbjct: 4   TKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFY--CKSSKMNYAF 61

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           K+F  M +RD++SWN++I G    G +  A+ LFD MPERD VSWN++L  Y   G    
Sbjct: 62  KVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 233 AFELFE-----KIPH----------------------------------RNIVSWSTMVW 253
           + E+F      KIPH                                   ++V+ S +V 
Sbjct: 122 SIEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK   ++ A  +F  MP + LV W+ +I+GY +     E  +L+  M + G+     T
Sbjct: 182 MYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
             S+  +CA      LG ++H    K  F  ++ +  A +DMYAKC  + +A  VFN + 
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLP 301

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
                S+NA++ G A   QG KAL +F  ++    G D+ +  G L AC+      +G+Q
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQ 361

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             + +    G+   +     ++D+ G+ G L EA  + + M    +A+ W  ++ A  ++
Sbjct: 362 -LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEME-RRDAVSWNAIIAAHEQN 419

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             +     +   ++R    +P ++T  S + A  G
Sbjct: 420 EEIVKTLSLFVSMLR-STMEPDDFTYGSVVKACAG 453



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 131/486 (26%), Positives = 230/486 (47%), Gaps = 23/486 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           QRD      LI   A    MG A  +F+ + + DV  +N+L+   + N +N ++  +F+ 
Sbjct: 69  QRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVR 128

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+   +  D  T+  +LKAC+G   + L   +H L  + G+  D+   ++L+D YSKC  
Sbjct: 129 MRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDMYSKCK- 187

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD-AVSWNTILDGY 224
             +  A ++F  M ER++V W+++IAG V+     E  +LF +M +    VS +T    +
Sbjct: 188 -KLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 225 AKAGEMNLAFELFEKI---------PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
                ++ AF+L  ++          + +I+  +T+   Y+K   M  A  +F+ +P   
Sbjct: 247 RSCAGLS-AFKLGTQLHGHALKSDFAYDSIIGTATLDM-YAKCERMFDAWKVFNTLPNPP 304

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
              +  II GYA +    +A  ++  ++   L  D+ +L   L AC+       G+++H 
Sbjct: 305 RQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHG 364

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE- 394
              K     N  V N ++DMY KCG+L  A  +F  M ++D VSWNA+   +A H Q E 
Sbjct: 365 LAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAI---IAAHEQNEE 421

Query: 395 --KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
             K L LF  M      PD +T+  V+ AC     ++ G +    + +  G+        
Sbjct: 422 IVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKS-GMGLDWFVGS 480

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
            ++D+ G+ G L EA ++   +  E   + W +++         E A+     ++ + G 
Sbjct: 481 ALVDMYGKCGMLMEAEKIHARLE-EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM-GI 538

Query: 513 DPGNYT 518
            P NYT
Sbjct: 539 IPDNYT 544


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 299/541 (55%), Gaps = 44/541 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK--VFNDIQDPDVHLY 83
           +C++L Q KQ+ A ++      D     +LI + A+  + G A    VF+ I  PD  +Y
Sbjct: 17  RCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMY 76

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKG-------VFTDNFTYPFLLKACNGKNWFHLVQM 136
           NTLIR    +     A  ++  M           +  D  T+PF+L+AC           
Sbjct: 77  NTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQ 136

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +HA + K G   D FV N+LI  ++  G +G + A                         
Sbjct: 137 VHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAA------------------------- 171

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
                   LFD     DAV+W+ ++ G+A+ G++  A ELF++ P +++VSW+ M+  Y+
Sbjct: 172 --------LFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYA 223

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K GDM  A+ LFD  P + +V W  +ISGY   G  K+A  L++QM+  G KPD  T++S
Sbjct: 224 KLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLS 283

Query: 317 ILAACAESGLLGLGMKVHASINKY--RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +L+ACA+SG L  G ++H  ++    R    T + NAL+DMYAKCGS+ +A+ VF  M  
Sbjct: 284 LLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQD 343

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K++ +WN+++ GLA+HG   +++ +F +M      PD+ TFV VL AC+H G +DKG +Y
Sbjct: 344 KNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEY 403

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M++ Y I P ++HYGCM+D+L R G LKEA   + +M +EPN +IW TLLGACR H 
Sbjct: 404 FSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHG 463

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +ELAE     L++ +    G++ +LSNI+A+ G+W    N+R  M  +   K +G + +
Sbjct: 464 EIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVI 523

Query: 555 E 555
           +
Sbjct: 524 D 524


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 332/588 (56%), Gaps = 13/588 (2%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ C  L +    +++   ++K+ L  D + A  L+   +   ++  A+ VF DI  PDV
Sbjct: 190 LNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDV 249

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N +I  CV +  N  A  +  +M+  G   + FT    LKAC    +  L + +H+ 
Sbjct: 250 VSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSS 309

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K     D+F    L+D YSKC ++    A++ + SM ++DI++WN++I+G  + G+  
Sbjct: 310 LIKMDAHSDLFAAVGLVDMYSKCEMM--DDARRAYDSMPKKDIIAWNALISGYSQCGDHL 367

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMV 252
           +A  LF +M   D     T L    K+     A ++ ++I   +I S         ++++
Sbjct: 368 DAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLL 427

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K   ++ A  +F+    + LV +T +I+ Y++ G  +EA +LY QM++A +KPD  
Sbjct: 428 DTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPF 487

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
              S+L ACA       G ++H    K+ F C+    N+LV+MYAKCGS+++A   F+ +
Sbjct: 488 ICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEI 547

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             + +VSW+AM+ G A HG G++AL LF++M  +G  P+  T V VLCAC HAG +++G 
Sbjct: 548 PNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGK 607

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           QYF  ME  +GI P  EHY CMIDLLGRSG+L EA+ LV S+P E +  +WG LLGA R 
Sbjct: 608 QYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARI 667

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  +EL ++    L  L+    G + +L+NI+A+ G W  VA VR  MK ++ +K  G S
Sbjct: 668 HKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMS 727

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
            +E+ ++V+ F V D+ H +S++IY  ++ LG  L   G+++ +  +I
Sbjct: 728 WIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDI 775



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/540 (27%), Positives = 244/540 (45%), Gaps = 105/540 (19%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           +L A +IK    RDP +   L++  + CR+ G A K+ ++  + DV  +++L+   VQN 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              +A  VF +M   GV  + FT+P +LKAC+ K   ++ + +H +    G+  D FV N
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP---- 210
           +L+  Y+KCG++  S  ++LF  + ER++VSWN++ +  V+     EA  LF EM     
Sbjct: 122 TLVVMYAKCGLLDDS--RRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 211 -----------------------------------ERDAVSWNTILDGYAKAGEMNLAFE 235
                                              + D  S N ++D Y+KAGE+  A  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           +F+ I H ++VSW+                                II+G         A
Sbjct: 240 VFQDIAHPDVVSWNA-------------------------------IIAGCVLHDCNDLA 268

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             L D+M+ +G +P+  TL S L ACA  G   LG ++H+S+ K     +      LVDM
Sbjct: 269 LMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDM 328

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y+KC  +D+A   ++ M KKD+++WNA++ G +  G    A+ LFS+M  E    ++ T 
Sbjct: 329 YSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTL 388

Query: 416 VGVL-----------CACTHAGFIDKGVQY-FY---SMERDYGILPQVEH---------- 450
             VL           C   H   I  G+   FY   S+   YG    ++           
Sbjct: 389 STVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTW 448

Query: 451 -----YGCMIDLLGRSGRLKEALRL---VQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
                Y  MI    + G  +EAL+L   +Q   ++P+  I  +LL AC   +A E  +++
Sbjct: 449 EDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQL 508



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 245/506 (48%), Gaps = 13/506 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++LN  +++    +    + D ++A  L+   A C  +  + ++F  I + +V  +N L 
Sbjct: 96  RDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALF 155

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              VQ+ L  +A  +F +M   G+  + F+   +L AC G     L + IH L+ K G  
Sbjct: 156 SCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLD 215

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D F  N+L+D YSK G +  ++A  +F  +   D+VSWN++IAG V       A  L D
Sbjct: 216 LDQFSANALVDMYSKAGEIEGAVA--VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLD 273

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDG 259
           EM       +  + ++ L   A  G   L  +L   +     H ++ +   +V  YSK  
Sbjct: 274 EMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCE 333

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            M+ A+  +D MP K ++ W  +ISGY++ G   +A  L+ +M    +  +  TL ++L 
Sbjct: 334 MMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLK 393

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           + A    + +  ++H    K     +  V N+L+D Y KC  +D A  +F   T +DLV+
Sbjct: 394 SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVA 453

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           + +M+   + +G GE+AL L+ +M+D    PD +    +L AC +    ++G Q  +   
Sbjct: 454 YTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ-LHVHA 512

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             +G +  +     ++++  + G +++A R    +P     + W  ++G   +H   + A
Sbjct: 513 IKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQHGHGKEA 571

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFA 525
             + + ++R  G  P + T++S + A
Sbjct: 572 LRLFNQMLR-DGVPPNHITLVSVLCA 596



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 212/463 (45%), Gaps = 47/463 (10%)

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +HA + K G+  D  + N L+  YSKC   G   A+KL     E D+VSW+S+++G V+ 
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFG--YARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW-------- 248
           G + EA  +F+EM                KA  M     +  K+    +V+         
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           +T+V  Y+K G ++ ++ LF  +  + +V W  + S Y +  +  EA  L+ +M  +G+ 
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P++ ++  IL ACA      LG K+H  + K     +    NALVDMY+K G ++ A++V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F  +   D+VSWNA++ G  +H   + AL L   MK  G  P+ +T    L AC   GF 
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 429 DKGVQYFYS---MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           + G Q   S   M+    +   V     ++D+  +   + +A R   SMP + + I W  
Sbjct: 301 ELGRQLHSSLIKMDAHSDLFAAVG----LVDMYSKCEMMDDARRAYDSMP-KKDIIAWNA 355

Query: 486 LLGA---CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           L+     C  H         LD +           ++ S +F+   D+N+          
Sbjct: 356 LISGYSQCGDH---------LDAV-----------SLFSKMFSEDIDFNQTT------LS 389

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
           T  +  +   +++V  ++H  S+   ++     I  +++T GK
Sbjct: 390 TVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGK 432



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 150/342 (43%), Gaps = 50/342 (14%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L   L+++   + +   KQ+    IK  +  D Y+   L+ +   C  +  A K+F +  
Sbjct: 388 LSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERT 447

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             D+  Y ++I A  Q     +A +++L MQ+  +  D F    LL AC   + +   + 
Sbjct: 448 WEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQ 507

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H    K G+  DIF  NSL++ Y+KCG   +  A + F  +  R IVSW++MI G  + 
Sbjct: 508 LHVHAIKFGFMCDIFASNSLVNMYAKCG--SIEDADRAFSEIPNRGIVSWSAMIGGYAQH 565

Query: 197 GELSEARRLFDEMPERDAVSWNTI------------------------------------ 220
           G   EA RLF++M  RD V  N I                                    
Sbjct: 566 GHGKEALRLFNQML-RDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQE 624

Query: 221 -----LDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEM----AKLLFDR 270
                +D   ++G++N A EL   IP   +   W  ++       ++E+    AK+LFD 
Sbjct: 625 HYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDL 684

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            P K+     ++ + YA  GM +  A++   M+++ +K + G
Sbjct: 685 EPEKSGTH-VLLANIYASAGMWENVAKVRKFMKDSKVKKEPG 725



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
           M++HA + K+ F  + ++ N LV +Y+KC     A  + +  ++ D+VSW+++L G   +
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G  E+AL +F+ M   G   +++TF  VL AC+    ++ G +  + M    G       
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMG-RKVHGMAVVTGFESDGFV 119

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
              ++ +  + G L ++ RL   + VE N + W  L 
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGI-VERNVVSWNALF 155


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 201/625 (32%), Positives = 339/625 (54%), Gaps = 72/625 (11%)

Query: 9   TWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           T FS    ++ +L +++ KC  L+  ++LF ++     QR+ +    LIS L     +  
Sbjct: 44  TQFSMEIFIQNRLIDVYGKCDCLDDARKLFDRMP----QRNTFTWNSLISVLTKSGFLDE 99

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F  + +PD   +N+++    Q+    ++   F+ M  +    + +++   L AC G
Sbjct: 100 AARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAG 159

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
               ++   +HAL+ K  Y  D+++ ++LID YSKCG   V+ A+++F  M ER++V+WN
Sbjct: 160 LMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG--SVACAEEVFSGMIERNLVTWN 217

Query: 188 SMIAGLVKGGELSEARRLFDEM------PER----------------------------- 212
           S+I    + G  SEA  +F  M      P+                              
Sbjct: 218 SLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKT 277

Query: 213 -----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                D V  N ++D YAK  ++N A  +F+++  RN+VS ++MV GY++   ++ A+ +
Sbjct: 278 NKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFM 337

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F +M  + +V W  +I+GY + G  +EA RL+  ++   + P   T  ++L         
Sbjct: 338 FSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL--------- 388

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
                          K +  V N+L+DMY KCGS+++   VF  M ++D VSWNA++ G 
Sbjct: 389 ---------------KSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGY 433

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A +G G +AL +F +M   G  PD  T +GVLCAC+HAG +++G  YF+SME ++G++P 
Sbjct: 434 AQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME-EHGLIPL 492

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            +HY CM+DLLGR+G L EA  L+++MPV P+A++WG+LL AC+ H  +E+ +   + L+
Sbjct: 493 KDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLL 552

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            +   + G Y +LSN++A  G W  V  VR  M++    K  G S +EV++ VH F V D
Sbjct: 553 EIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKD 612

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGH 592
           + HP  +QIY ++  L + +K VG+
Sbjct: 613 KSHPHRKQIYSVLKMLTEQMKRVGY 637



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 151/528 (28%), Positives = 239/528 (45%), Gaps = 110/528 (20%)

Query: 106 MQEKGVFTDNF---TYPF--LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
           M + G+  D +   + PF  LL +C         +++HA I    +  +IF+ N LID Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
            KC  +    A+KLF  M +R+  +WNS+I+ L K G L EA RLF  MPE D  SWN++
Sbjct: 61  GKCDCL--DDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSM 118

Query: 221 LDGYAKAGEMNLAFELFEKIPHR------------------------------------- 243
           + G+A+      + E F K+ HR                                     
Sbjct: 119 VSGFAQHDRFEESLEYFVKM-HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSR 177

Query: 244 ---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
              ++   S ++  YSK G +  A+ +F  M  + LV W  +I+ Y + G A EA  ++ 
Sbjct: 178 YSTDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFV 237

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKC 359
           +M ++GL+PD+ TL S+++ACA    L  G+++HA + K  +F+ +  + NALVDMYAKC
Sbjct: 238 RMMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKC 297

Query: 360 GSLDNAMSVFN-------------------------------GMTKKDLVSWNAMLYGLA 388
             ++ A  VF+                                MT++++VSWNA++ G  
Sbjct: 298 SKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYT 357

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-----------CTHAGFIDKGVQYFYS 437
            +G+ E+AL LF  +K E   P  YTF  +L +               G I+ G + F  
Sbjct: 358 QNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEK 417

Query: 438 M-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV---EPNAIIWGTLLGACRKH 493
           M ERD         +  +I    ++G   EAL++ + M V   +P+ +    +L AC   
Sbjct: 418 MKERD------CVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHA 471

Query: 494 NAVELAEEVL-----DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
             VE             LI LK     +YT + ++    G  N+  N+
Sbjct: 472 GLVEEGRHYFFSMEEHGLIPLK----DHYTCMVDLLGRAGCLNEAKNL 515


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  364 bits (934), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 193/541 (35%), Positives = 299/541 (55%), Gaps = 44/541 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK--VFNDIQDPDVHLY 83
           +C++L Q KQ+ A ++      D     +LI + A+  + G A    VF+ I  PD  +Y
Sbjct: 17  RCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFDRIPHPDRFMY 76

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKG-------VFTDNFTYPFLLKACNGKNWFHLVQM 136
           NTLIR    +     A  ++  M           +  D  T+PF+L+AC           
Sbjct: 77  NTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACAAMGAGETGAQ 136

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +HA + K G   D FV N+LI  ++  G +G + A                         
Sbjct: 137 VHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAA------------------------- 171

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
                   LFD     DAV+W+ ++ G+A+ G++  A ELF++ P +++VSW+ M+  Y+
Sbjct: 172 --------LFDGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYA 223

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K GDM  A+ LFD  P + +V W  +ISGY   G  K+A  L++QM+  G KPD  T++S
Sbjct: 224 KLGDMAPARELFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLS 283

Query: 317 ILAACAESGLLGLGMKVHASINKY--RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +L+ACA+SG L  G ++H  ++    R    T + NAL+DMYAKCGS+ +A+ VF  M  
Sbjct: 284 LLSACADSGDLDAGRRLHGFLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQD 343

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K++ +WN+++ GLA+HG   +++ +F +M      PD+ TFV VL AC+H G +DKG +Y
Sbjct: 344 KNVSTWNSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEY 403

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M++ Y I P ++HYGCM+D+L R G LKEA   + +M +EPN +IW TLLGACR H 
Sbjct: 404 FSLMQQRYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHG 463

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +ELAE     L++ +    G++ +LSNI+A+ G+W    N+R  M  +   K +G + +
Sbjct: 464 EIELAEHANRELLKARSDASGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVI 523

Query: 555 E 555
           +
Sbjct: 524 D 524


>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
          Length = 560

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 197/532 (37%), Positives = 291/532 (54%), Gaps = 56/532 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C   +  +Q+ A+II+  L +D +I  + ++             VFN +  P   L+
Sbjct: 80  LKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLW 139

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           NT I+   +N   +    +F+ M+      D FTYP L+KAC+           H    +
Sbjct: 140 NTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGVAFHGSAVR 199

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           CG  GD+FV  SLID Y KCG                                 E+  AR
Sbjct: 200 CGVGGDVFVMTSLIDLYGKCG---------------------------------EILCAR 226

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           ++FDEM ER+ VSW  ++ GYA   ++  A +LF+++P +N VSW+ ++ GY K GD+  
Sbjct: 227 KVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRS 286

Query: 264 AKLLFDRMPAKT--LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           A+ +FD MP +   +V W+ +ISG                     +KPD+  ++S+++AC
Sbjct: 287 ARKMFDEMPHRNRDVVAWSALISG--------------------NVKPDEFIMVSLMSAC 326

Query: 322 AESGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           ++ G L L   V   + K     +  +V  AL+DM AKCGS+D A  +F  M K+DL+S+
Sbjct: 327 SQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISY 386

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            +M+ GL++HG G +A+ LFSRM +EG  PD   F  +L AC+ AG +D+G  YF SM+ 
Sbjct: 387 CSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKT 446

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           DY I+P  +HY CM+DLLGR+GRLKEA  L++SMPVEP+A  WG LLGAC+ H  +EL E
Sbjct: 447 DYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGE 506

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
            V D L  L+  + GNY +LSNI+AA   W  V+ +R +M++   +K  G S
Sbjct: 507 VVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCS 558


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 195/543 (35%), Positives = 323/543 (59%), Gaps = 12/543 (2%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV-FTDNFTYPFLLK 123
           +G A  VF   +  DV  +N+++RA V +++  +A + + +M E+     D FT+P LLK
Sbjct: 28  VGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
            C     F + +++H  + K     D+++  +L++ Y+ CG   +  A+ LF  MG R+ 
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG--DLKSARFLFERMGHRNK 145

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK 239
           V W SMI+G +K    +EA  L+ +M E     D V+  T++   A+  ++ +  +L   
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205

Query: 240 IPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           I   ++    V  S +V  Y+K GD++ A+ +FD++  K +  W+ +I GY +   + EA
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEA 265

Query: 296 ARLYDQMEE-AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
            +L+ ++   + ++P++ T++++++ACA+ G L  G  VH  I + +   + ++ N+L+D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           M++KCG +D A  +F+ M+ KDL+SWN+M+ GLA+HG G +AL  F  M+     PD+ T
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEIT 385

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F+GVL AC+HAG + +G + FY +E  YG+  + EHYGCM+DLL R+G L EA   ++ M
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM 445

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P++P+  IWG++LGACR +N +EL EE   CL+ L+ ++ G Y +LSNI+A    WN+V 
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKMWNEVK 505

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
            VR  M +   QK  G SSV +DN  H F   D  HP+  +I  M+  + + LK VG+ A
Sbjct: 506 KVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLVGYVA 565

Query: 595 KLS 597
             S
Sbjct: 566 DTS 568



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 183/355 (51%), Gaps = 22/355 (6%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           N LI      G +GV  A  +F      D+++WNSM+   V       A + + EM ER 
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 213 ----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
               D  ++ ++L G A     K G++ L  ++ + + H ++   +T++  Y+  GD++ 
Sbjct: 74  RNVPDRFTFPSLLKGCALLLEFKVGKV-LHGQVVKYMLHSDLYIETTLLNMYAACGDLKS 132

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LF+RM  +  V WT +ISGY +     EA  LY +MEE G  PD+ T+ ++++ACAE
Sbjct: 133 ARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAE 192

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              LG+GMK+H+ I +   K    + +ALV+MYAKCG L  A  VF+ ++ KD+ +W+A+
Sbjct: 193 LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSAL 252

Query: 384 LYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++G   + +  +AL LF  +       P++ T + V+ AC   G ++ G         DY
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-----RWVHDY 307

Query: 443 GILPQVEHY----GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
               Q  H       +ID+  + G +  A R+  SM  + + I W +++     H
Sbjct: 308 ITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGLALH 361



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 176/367 (47%), Gaps = 23/367 (6%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K L  Q++K  L  D YI   L++  A C  +  A  +F  +   +  ++ ++I   ++N
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK-----CGYFG 148
               +A  ++  M+E G   D  T   L+ AC       +   +H+ I +     C   G
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                ++L++ Y+KCG   +  A+++F  + ++D+ +W+++I G VK    +EA +LF E
Sbjct: 219 -----SALVNMYAKCG--DLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFRE 271

Query: 209 MP-----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDG 259
           +        + V+   ++   A+ G++     + + I       ++   ++++  +SK G
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG 331

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D++ AK +FD M  K L+ W  +++G A  G+ +EA   +  M+   L+PD+ T I +L 
Sbjct: 332 DIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLT 391

Query: 320 ACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDL 377
           AC+ +GL+  G K+   I   Y  +  +     +VD+  + G L  A      M  + D 
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 378 VSWNAML 384
             W +ML
Sbjct: 452 AIWGSML 458



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 149/347 (42%), Gaps = 49/347 (14%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L    +L + I ++D++    +   L++  A C  +  A +VF+ + D DV+ ++ LI
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALI 253

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
              V+N+ + +A ++F ++        N  T   ++ AC         + +H  I +   
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV------------ 194
              + + NSLID +SKCG   +  AK++F SM  +D++SWNSM+ GL             
Sbjct: 314 GHSVSLNNSLIDMFSKCG--DIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQF 371

Query: 195 -----------------------KGGELSEARRLFDEMPERDAVS-----WNTILDGYAK 226
                                    G + E ++LF E+     V      +  ++D   +
Sbjct: 372 HLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCR 431

Query: 227 AGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEM----AKLLFDRMPAKTLVPWTI 281
           AG +  A E    +P   +   W +M+       ++E+    A+ L +  P    V + +
Sbjct: 432 AGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGV-YIL 490

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           + + YA + M  E  ++ + M E G++   G    ++   A S L G
Sbjct: 491 LSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAG 537


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 195/575 (33%), Positives = 329/575 (57%), Gaps = 17/575 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q++ Q+I   L +  ++  K I++      +  A K F ++ +PD+ L+N +I+   Q +
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           +     R+++DMQ   V  + FT+ ++LKAC G +   + + IH   +K G+  ++FV N
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE--- 211
           SL+  Y+K G   +S A+ +F  + +R +VSW S+I+G V+ G+  EA  +F EM +   
Sbjct: 125 SLVSMYAKFG--QISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNV 182

Query: 212 -RDAVSWNTILDGYAKAGEMN-------LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
             D ++  +++  Y    ++        L  +L  +     ++S +TM   Y+K G +E+
Sbjct: 183 KPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTM---YAKRGLVEV 239

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+  F+RM    L+ W  +ISGYA  G  +EA +L+ +M    ++ D  T+ S + A A+
Sbjct: 240 ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQ 299

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L L   +   I+K  ++ +T V   L+DMYAKCGS+  A  VF+ +  KD+V W+ M
Sbjct: 300 VGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVM 359

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G  +HG G++A+ L++ MK  G  P+  TF+G+L AC ++G + +G + F+ M  D+G
Sbjct: 360 IMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHG 418

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P  +HY C++DLLGR+G L +A   + SMP++P   +WG LL AC+ H  V L E   
Sbjct: 419 IEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAA 478

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L  L   + G+Y  LSN++A+   W +VANVRL M +    K  G SS+E++  +  F
Sbjct: 479 EQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETF 538

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            V D+ HPKS++I++ ++ L K LK  G+   + +
Sbjct: 539 QVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMES 573



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 11/366 (3%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+  Q  K     + ++   L+S  A   Q+  A  VF+ + D  V  + ++I   VQN
Sbjct: 105 KQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQN 164

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  VF +M++  V  D      ++ A          + IH L+ K G   +  + 
Sbjct: 165 GDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIV 224

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
            SL   Y+K G+V V  A+  F  M + +++ WN+MI+G    G   EA +LF EM  + 
Sbjct: 225 ISLTTMYAKRGLVEV--ARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKN 282

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFEL---FEKIPHRNIVSWST-MVWGYSKDGDMEMAK 265
              D+++  + +   A+ G + LA  L     K  +R+    +T ++  Y+K G + +A+
Sbjct: 283 IRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLAR 342

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FDR+  K +V W+++I GY   G  +EA  LY++M++AG+ P+DGT I +L AC  SG
Sbjct: 343 CVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSG 402

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAML 384
           L+  G ++   +  +  + +    + +VD+  + G L+ A      M  K  VS W A+L
Sbjct: 403 LVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALL 462

Query: 385 YGLAMH 390
               +H
Sbjct: 463 SACKIH 468



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 120/267 (44%), Gaps = 11/267 (4%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L Q K +   + KL L+ +P I   L +  A    + +A   FN ++ P++ L+N +I
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMI 259

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
                N    +A ++F +M  K +  D+ T    + A        L + +   I K  Y 
Sbjct: 260 SGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYR 319

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D FV   LID Y+KCG   + LA+ +F  + ++D+V W+ MI G    G   EA  L++
Sbjct: 320 DDTFVNTGLIDMYAKCG--SIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYN 377

Query: 208 EMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDG 259
           EM +        ++  +L     +G +   +ELF  +P   I      +S +V    + G
Sbjct: 378 EMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAG 437

Query: 260 DMEMAKLLFDRMPAKTLVP-WTIIISG 285
            +  A      MP K  V  W  ++S 
Sbjct: 438 YLNQAYDFIMSMPIKPGVSVWGALLSA 464


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 191/580 (32%), Positives = 320/580 (55%), Gaps = 38/580 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVH 81
           L KC +L  TKQ+ AQI K  L  DP +  KL+   ++ +   +  A+++F+   +PD  
Sbjct: 9   LSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNPDTF 68

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHAL 140
           ++NTLIR+   +     +   F+ ++ +   + D+FT+ F LKA            +H+ 
Sbjct: 69  MHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQ 128

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
            ++ G+   IFV  +LI  Y++CG  G                                 
Sbjct: 129 AFRHGFDAHIFVGTTLISMYAECGDSG--------------------------------- 155

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            ARR+FDEM E + V+WN +L    + G++  A ++F  +P RN+ SW+ M+ GY+K G+
Sbjct: 156 SARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGE 215

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           + +A+ +F  MP +  V W+ +I G+A  G   EA   + ++    ++ ++ +L  +L+A
Sbjct: 216 LGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSA 275

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
           CA++G    G  +H  + K  F    +V NAL+D Y+KCG++  A  VF  M   + +VS
Sbjct: 276 CAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARSIVS 335

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W +++ GLAMHG GE+A+ LF  M++ G  PD  TF+ +L AC+H+G +++G   F  M+
Sbjct: 336 WTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMK 395

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             YGI P +EHYGCM+DL GR+ RL++A   +  MPV PNAIIW TLLGAC  H  +E+A
Sbjct: 396 NLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMA 455

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E V   L  +   + G++ +LSN++A  G W  V+++R  M +   +K  G S +E+D  
Sbjct: 456 ELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKV 515

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKP-VGHAAKLSA 598
           ++ F   ++ +  +E+ ++ +  +   L+   G+A +L +
Sbjct: 516 IYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRS 555


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 201/593 (33%), Positives = 329/593 (55%), Gaps = 14/593 (2%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           P  +    LL+   +NL    +L + +++   +I    Q + +    +++  A CRQ+  
Sbjct: 140 PVVYDFTYLLQLSGENL----DLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIED 195

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F  +   D+  +NT++    QN    +A +V L MQE G   D+ T   +L A   
Sbjct: 196 AYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVAD 255

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                + + IH   ++ G+   + V  +++D+Y KCG   V  A+ +F  M  R++VSWN
Sbjct: 256 LKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCG--SVRSARLVFKGMSSRNVVSWN 313

Query: 188 SMIAGLVKGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +MI G  + GE  EA     ++ DE  E   VS    L   A  G++     +   +  +
Sbjct: 314 TMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEK 373

Query: 244 NI---VS-WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            I   VS  ++++  YSK   +++A  +F  +  KT+V W  +I GYA+ G   EA  L+
Sbjct: 374 KIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLF 433

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M+   +KPD  TL+S++ A A+  +      +H    +     N  VC AL+D +AKC
Sbjct: 434 CEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKC 493

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G++  A  +F+ M ++ +++WNAM+ G   +G G +AL LF+ M++    P++ TF+ V+
Sbjct: 494 GAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVI 553

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+H+G +++G+ YF SM+ +YG+ P ++HYG M+DLLGR+GRL +A + +Q MPV+P 
Sbjct: 554 AACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPG 613

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
             + G +LGACR H  VEL E+  D L  L   D G + +L+N++A+   W+KVA VR  
Sbjct: 614 ITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTA 673

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           M+K   QK  G S VE+ NEVH F      HP+S++IY  + TLG ++K  G+
Sbjct: 674 MEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGY 726



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/520 (26%), Positives = 240/520 (46%), Gaps = 53/520 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +L +  Q+   IIK     +     KLIS       +  A +VF  ++     LY
Sbjct: 51  LELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLY 110

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           +T+++   +NS    A R +  M+   V    + + +LL+           + IH ++  
Sbjct: 111 HTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVIT 170

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  ++F   ++++ Y+KC    +  A K+F  M +RD+VSWN+++AG  + G    A 
Sbjct: 171 NGFQSNLFAMTAVVNLYAKCR--QIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAV 228

Query: 204 RLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGY 255
           ++  +M E     D+++  ++L   A    + +   +    F       +   + M+  Y
Sbjct: 229 QVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTY 288

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K G +  A+L+F  M ++ +V W  +I GYA+ G ++EA   + +M + G++P + +++
Sbjct: 289 FKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMM 348

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L ACA  G L  G  VH  +++ +   + +V N+L+ MY+KC  +D A SVF  +  K
Sbjct: 349 GALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHK 408

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC------------- 422
            +V+WNAM+ G A +G   +AL LF  M+     PD +T V V+ A              
Sbjct: 409 TVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIH 468

Query: 423 --------------------THA--GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
                               THA  G I    + F  M+  + I      +  MID  G 
Sbjct: 469 GLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGT 523

Query: 461 SGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVE 497
           +G  +EAL L   M    V+PN I + +++ AC     VE
Sbjct: 524 NGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVE 563



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 9/274 (3%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           + K   +  A  +F+ +  K  V +  ++ GYA+    ++A R Y++M    + P     
Sbjct: 86  FCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDF 145

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
             +L    E+  L  G ++H  +    F+ N     A+V++YAKC  +++A  +F  M +
Sbjct: 146 TYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQ 205

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ- 433
           +DLVSWN ++ G A +G   +A+ +  +M++ G  PD  T V VL A      +  G   
Sbjct: 206 RDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSI 265

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           + Y+    +  +  V     M+D   + G ++ A RLV       N + W T++    ++
Sbjct: 266 HGYAFRAGFEYMVNVA--TAMLDTYFKCGSVRSA-RLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 494 NAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFA 525
                +EE     +++  +G +P N +M+  + A
Sbjct: 323 GE---SEEAFATFLKMLDEGVEPTNVSMMGALHA 353


>gi|354805159|gb|AER41579.1| CRR4 [Oryza brachyantha]
          Length = 626

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 321/607 (52%), Gaps = 43/607 (7%)

Query: 18  EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---SLALCRQMGLAIKVFND 74
           +E L+ L    + +  +Q  A+++   L   P + P L++   S    R    A++    
Sbjct: 3   QELLRILRTLGSPHHLRQAHARLVAAGLSASPRLLPALVAAAFSAHSPRHASAALRAAGP 62

Query: 75  IQDPDVHLYNTLIR----ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
                 H  NTLI     A     + A A   +  M   GV  + FT+ FLL+AC    +
Sbjct: 63  AASSVSH--NTLIERLAGARGHRPVPADALAAYTAMLAAGVPPNGFTFTFLLRACALLGF 120

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSWNSM 189
               + +H  I + G+  ++FV N+L+D Y +CG  G V+ A+++F  M +RD+VSWNS+
Sbjct: 121 PRPCRCVHGQIVRWGFGSEVFVQNTLLDVYYRCGGPGRVAAARQVFDEMVDRDVVSWNSI 180

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN----- 244
           I   +  G+ + A  LF+ MPER+ VSWNT++ G+A+ G+M  A  +F+++P RN     
Sbjct: 181 IGVYMSSGDYTGAMELFEAMPERNVVSWNTLVAGFARVGDMVTAQTVFDRMPSRNAISWN 240

Query: 245 ---------------------------IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
                                      +VSW+ MV  Y+K GD++ AK LFD MP K LV
Sbjct: 241 LMISGYASSGDVEAARSMFDRMDQKKDVVSWTAMVSAYAKIGDLDTAKELFDHMPLKNLV 300

Query: 278 PWTIIISGYAEKGMAKEAARLYD-QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
            W  +I+GY       EA R +   M E   +PD+ TL+S+++ACA+ G +     + + 
Sbjct: 301 SWNAMITGYNHNSRYGEALRTFQLMMLEGRFRPDEATLVSVVSACAQLGSVEYCNWISSF 360

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I K        + NAL+DM+AKCG +  A S+F  M  + +++W  M+ G A +G   +A
Sbjct: 361 IRKSNVHLTIALGNALIDMFAKCGDVGRAQSIFYEMKTRCIITWTTMISGFAFNGLCREA 420

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +++ M  EG   D   F+  L AC H G + +G   F  M   Y I P++EHYGC++D
Sbjct: 421 LLVYNNMCREGVELDDMVFIAALAACVHGGLLQEGWSIFNEMVEQYNIQPRMEHYGCVVD 480

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+G L+EA+  ++SMP+EP+ +IW TLL +C  H   E  + V   +  L+  +   
Sbjct: 481 LLGRAGNLQEAVLFIESMPLEPSVVIWATLLSSCVAHGNAEFIDYVSKKITELEPFNSSY 540

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
             ++SN  A  G W+ V   R  M+    +K  G+SS++V +EVHEF   D +H + ++I
Sbjct: 541 QVLVSNSSALEGRWDGVIGARTIMRNWGIEKVPGSSSIQVGSEVHEFLAKDTMHERRKEI 600

Query: 577 YQMINTL 583
           Y+ ++ L
Sbjct: 601 YETVDGL 607


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  364 bits (934), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 206/587 (35%), Positives = 324/587 (55%), Gaps = 20/587 (3%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           E L+   K K+L   KQ+   IIK  ++++ ++   L+     C ++  A  VF+ +   
Sbjct: 33  EVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKK 92

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
               +N +I   V++     A R+F +M  +GV  +  TY  +LKAC   +     + +H
Sbjct: 93  SGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVH 152

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           A I   G   D+ V  +L+  Y KCG   ++ A+++F ++   DI+SW  MI    + G 
Sbjct: 153 ACIRHGGLESDVRVGTALLRMYGKCG--SINEARRIFDNLMNHDIISWTVMIGAYAQSGN 210

Query: 199 LSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR---------NI 245
             EA RL  +M +     +A+++ +IL+  A  G +      + K  HR         ++
Sbjct: 211 GKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK-----WVKRVHRHALDAGLELDV 265

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              + +V  Y+K G ++ A+++FDRM  + +V W ++I  +AE G   EA  L+ QM+  
Sbjct: 266 RVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTE 325

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G KPD    +SIL ACA +G L    K+H        + +  V  ALV MY+K GS+D+A
Sbjct: 326 GCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDA 385

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF+ M  +++VSWNAM+ GLA HG G+ AL +F RM   G  PD+ TFV VL AC+HA
Sbjct: 386 RVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHA 445

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +D+G   + +M + YGI P V H  CM+DLLGR+GRL EA   + +M V+P+   WG 
Sbjct: 446 GLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGA 505

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLG+CR +  VEL E V    ++L   +   Y +LSNI+A  G W+ V+ VR  M++   
Sbjct: 506 LLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGI 565

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +K  G S +EVDN++H+F V D  HP+ ++I +  + + + +K  G+
Sbjct: 566 RKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGY 612



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/441 (30%), Positives = 221/441 (50%), Gaps = 17/441 (3%)

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
           ++A  V ++  ++G+ TD+F Y  +LK C  +      + +H  I K     +  V N+L
Sbjct: 10  SEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNL 69

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER---- 212
           +  Y +CG   +  A+ +F ++ ++   SWN+MIAG V+     +A RLF EM       
Sbjct: 70  LHVYIECG--RLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQP 127

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLF 268
           +A ++  IL   A    +    E+   I H  + S     + ++  Y K G +  A+ +F
Sbjct: 128 NAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIF 187

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D +    ++ WT++I  YA+ G  KEA RL  QME+ G KP+  T +SIL ACA  G L 
Sbjct: 188 DNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALK 247

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
              +VH        + +  V  ALV MYAK GS+D+A  VF+ M  +D+VSWN M+   A
Sbjct: 248 WVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFA 307

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG+G +A  LF +M+ EG  PD   F+ +L AC  AG ++  V+  +    D G+   V
Sbjct: 308 EHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALE-WVKKIHRHALDSGLEVDV 366

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
                ++ +  +SG + +A  +   M V  N + W  ++    +H    L ++ L+   R
Sbjct: 367 RVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQHG---LGQDALEVFRR 422

Query: 509 L--KGSDPGNYTMLSNIFAAT 527
           +   G  P   T ++ + A +
Sbjct: 423 MTAHGVKPDRVTFVAVLSACS 443


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/593 (34%), Positives = 318/593 (53%), Gaps = 15/593 (2%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
              C  L+  K   QL    +K D   D  I    +   A C +M  A KVFN + +P  
Sbjct: 246 FRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHA 139
             YN +I    +     +A  +F  +Q   +  D  +    L AC+  K     +Q+ H 
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQL-HG 364

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           L  KCG   +I V N+++D Y KCG   +  A  +F  M  RD VSWN++IA   +  E+
Sbjct: 365 LAVKCGLGFNICVANTILDMYGKCG--ALVEACTIFDDMERRDAVSWNAIIAAHEQNEEI 422

Query: 200 SEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSW---STM 251
            +   LF  M     E D  ++ +++   A    +N   E+  +I    + + W   S +
Sbjct: 423 VKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDWFVGSAL 482

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y K G +  A+ + DR+  KT V W  IISG++ +  ++ A R + QM E G+ PD+
Sbjct: 483 VDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDN 542

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T  ++L  CA    + LG ++HA I K     +  + + LVDMY+KCG++ ++  +F  
Sbjct: 543 FTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMFEK 602

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
             K+D V+W+AM+   A HG GE+A+ LF  M+     P+   F+ VL AC H G++DKG
Sbjct: 603 TPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKG 662

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           + YF  M+  YG+ P +EHY CM+DLLGRS ++ EAL+L++SM  E + +IW TLL  C+
Sbjct: 663 LHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSNCK 722

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
               VE+AE+  + L++L   D   Y +L+N++A  G W +VA +R  MK  + +K  G 
Sbjct: 723 MQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEPGC 782

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEGV 604
           S +EV +EVH F V D+ HP+SE+IY+  + L  ++K  G+   + + + E V
Sbjct: 783 SWIEVRDEVHTFLVGDKAHPRSEEIYEQTHLLVDEMKWAGYVPDIDSMLDEEV 835



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 123/455 (27%), Positives = 207/455 (45%), Gaps = 44/455 (9%)

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
           T  FT+  +L+ C+     +  +  HA +    +   I+V N L+  Y  C    ++ A 
Sbjct: 4   TKKFTFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFY--CKSSNMNYAF 61

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           K+F  M  RD++SWN+MI G  + G +  A+ LFD MPERD VSWN++L  Y   G    
Sbjct: 62  KVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 233 AFELFE-----KIPH----------------------------------RNIVSWSTMVW 253
           + E+F      KIPH                                   ++V+ S +V 
Sbjct: 122 SIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK   ++ A  +F  MP + LV W+ +I+GY +     E  +L+  M + G+     T
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
             S+  +CA      LG ++H    K  F  ++ +  A +DMYAKC  + +A  VFN + 
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLP 301

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
                S+NA++ G A   QG KAL +F  ++      D+ +  G L AC+      +G+Q
Sbjct: 302 NPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQ 361

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             + +    G+   +     ++D+ G+ G L EA  +   M    +A+ W  ++ A  ++
Sbjct: 362 -LHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDME-RRDAVSWNAIIAAHEQN 419

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             +     +   ++R    +P ++T  S + A  G
Sbjct: 420 EEIVKTLSLFVSMLR-STMEPDDFTYGSVVKACAG 453



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 241/506 (47%), Gaps = 27/506 (5%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  N+N   ++F ++      RD      +I   A    MG A  +F+ + + DV  +N+
Sbjct: 53  KSSNMNYAFKVFDRMP----HRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNS 108

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           L+   + N +N ++  +F+ M+   +  D  T+  +LKAC+G   + L   +H L  + G
Sbjct: 109 LLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMG 168

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D+   ++L+D YSKC    +  A ++F  M ER++V W+++IAG V+     E  +L
Sbjct: 169 FENDVVTGSALVDMYSKCK--KLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKL 226

Query: 206 FDEMPERD-AVSWNTILDGYAKAGEMNLAFELFEKI---------PHRNIVSWSTMVWGY 255
           F +M +    VS +T    +     ++ AF+L  ++          + +I+  +T+   Y
Sbjct: 227 FKDMLKVGMGVSQSTYASVFRSCAGLS-AFKLGTQLHGHALKSDFAYDSIIGTATLDM-Y 284

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K   M  A  +F+ +P      +  II GYA +    +A  ++  ++   L  D+ +L 
Sbjct: 285 AKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLS 344

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L AC+       G+++H    K     N  V N ++DMY KCG+L  A ++F+ M ++
Sbjct: 345 GALTACSVIKGHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERR 404

Query: 376 DLVSWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
           D VSWNA+   +A H Q E   K L LF  M      PD +T+  V+ AC     ++ G+
Sbjct: 405 DAVSWNAI---IAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGM 461

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +    + +  G+         ++D+ G+ G L EA ++   +  E   + W +++     
Sbjct: 462 EIHGRIVKS-GMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLE-EKTTVSWNSIISGFSS 519

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYT 518
               E A+     ++ + G  P N+T
Sbjct: 520 QKQSENAQRYFSQMLEM-GVIPDNFT 544


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 179/449 (39%), Positives = 267/449 (59%), Gaps = 26/449 (5%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           LA+ LF  M ERD+ SWN M+ G V+  +L  AR LF+ MPERD VSWN +L GYA+ G 
Sbjct: 13  LARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAMLSGYAQNGF 72

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF--------------------- 268
           ++ A E+F K+P +N +SW+ ++  Y ++G +E AK LF                     
Sbjct: 73  VDEAREIFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRK 132

Query: 269 -----DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
                D MP +  + W+ +I+GY++ G ++EA   + +M+    + +  +    L+ C+ 
Sbjct: 133 RRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSN 192

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              L LG ++H  + K  ++    V NAL+ MY KCGS+D A   F  + +KD+VSWN M
Sbjct: 193 IAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTM 252

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           ++G A HG GE+AL +F  MK  G  PD  T V VL AC+HAG +D+G +YFYSM RDYG
Sbjct: 253 IHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYG 312

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I  ++ HY CM+DLLGR+G+L+EA  L+++MP EP+A  WG LLGA R H   EL E+  
Sbjct: 313 ITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAA 372

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             +  ++  + G Y +LS ++AA+G W+    +RL+M+    +K  G S +EV N++H F
Sbjct: 373 QIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTF 432

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            V D  HP +++IY  +  +   LK  G+
Sbjct: 433 KVGDTSHPHTDKIYTFLEEMDLKLKQEGY 461



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 112/246 (45%), Gaps = 15/246 (6%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+++   D   ++ +I    QN  + +A   F++MQ      +  ++   L  C+    
Sbjct: 136 LFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAA 195

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             L + +H  + K GY    +V N+L+  Y KCG   +  A+  F  + E+D+VSWN+MI
Sbjct: 196 LELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCG--SIDEARDAFQEILEKDVVSWNTMI 253

Query: 191 AGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH---- 242
            G  + G   EA  +F+ M       D  +  ++L   + AG ++   E F  +      
Sbjct: 254 HGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGI 313

Query: 243 -RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAAR 297
              +V ++ MV    + G +E A+ L   MP +     W  ++     +    + ++AA+
Sbjct: 314 TAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQ 373

Query: 298 LYDQME 303
           +  +ME
Sbjct: 374 IIFEME 379


>gi|15240281|ref|NP_198573.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170664|sp|Q9FHR3.1|PP403_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g37570
 gi|9757967|dbj|BAB08303.1| unnamed protein product [Arabidopsis thaliana]
 gi|332006824|gb|AED94207.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 550

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 192/536 (35%), Positives = 314/536 (58%), Gaps = 6/536 (1%)

Query: 21  LQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK-VFNDIQDP 78
           L+ L K CK+     Q+ A+II+  L++D  +    ISS +           VF  +  P
Sbjct: 13  LETLFKLCKSEIHLNQIHARIIRKGLEQDQNLISIFISSSSSSSSSLSYSSSVFERVPSP 72

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMI 137
             +L+N LI+      L  +   + + M   G+   D +T+P ++K C+      +   +
Sbjct: 73  GTYLWNHLIKGYSNKFLFFETVSILMRMMRTGLARPDEYTFPLVMKVCSNNGQVRVGSSV 132

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H L+ + G+  D+ V  S +D Y KC    +  A+K+F  M ER+ VSW +++   VK G
Sbjct: 133 HGLVLRIGFDKDVVVGTSFVDFYGKCK--DLFSARKVFGEMPERNAVSWTALVVAYVKSG 190

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
           EL EA+ +FD MPER+  SWN ++DG  K+G++  A +LF+++P R+I+S+++M+ GY+K
Sbjct: 191 ELEEAKSMFDLMPERNLGSWNALVDGLVKSGDLVNAKKLFDEMPKRDIISYTSMIDGYAK 250

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GDM  A+ LF+      +  W+ +I GYA+ G   EA +++ +M    +KPD+  ++ +
Sbjct: 251 GGDMVSARDLFEEARGVDVRAWSALILGYAQNGQPNEAFKVFSEMCAKNVKPDEFIMVGL 310

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++AC++ G   L  KV + +++   K +++ V  AL+DM AKCG +D A  +F  M ++D
Sbjct: 311 MSACSQMGCFELCEKVDSYLHQRMNKFSSHYVVPALIDMNAKCGHMDRAAKLFEEMPQRD 370

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           LVS+ +M+ G+A+HG G +A+ LF +M DEG  PD+  F  +L  C  +  +++G++YF 
Sbjct: 371 LVSYCSMMEGMAIHGCGSEAIRLFEKMVDEGIVPDEVAFTVILKVCGQSRLVEEGLRYFE 430

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M + Y IL   +HY C+++LL R+G+LKEA  L++SMP E +A  WG+LLG C  H   
Sbjct: 431 LMRKKYSILASPDHYSCIVNLLSRTGKLKEAYELIKSMPFEAHASAWGSLLGGCSLHGNT 490

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           E+AE V   L  L+    G+Y +LSNI+AA   W  VA++R +M +    K  G S
Sbjct: 491 EIAEVVARHLFELEPQSAGSYVLLSNIYAALDRWTDVAHLRDKMNENGITKICGRS 546


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 181/460 (39%), Positives = 278/460 (60%), Gaps = 38/460 (8%)

Query: 137 IHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           +HA   + G+   D+FV  +L++ Y+K                                 
Sbjct: 69  LHARALRSGFAAADLFVRTALVEMYAKTA------------------------------- 97

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            GE++ AR  FDE P RD    N +L  Y   GE+  A ++F+ +  R++VSW+TM+ GY
Sbjct: 98  AGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGY 157

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +  GD+ MA+ +FD    +    W+ +IS YA+   +KEA  L+ +M  AG+ PD  +++
Sbjct: 158 AVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMV 217

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+L+AC+  G L +G +VH  +   R + +  +  ALVDMYAKCG ++N++ VF+ M  K
Sbjct: 218 SVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK 277

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+++W++M+ GLA HG G  AL LFS M  +G  P++ TF+GVL ACTH G ++ G +YF
Sbjct: 278 DVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYF 337

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            SM   +G++P++EHYGCM+DLLGR+G ++EA+ L++SM  +P+ IIW TLLGACR H  
Sbjct: 338 SSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKN 397

Query: 496 VELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           VE+AEE    + +LK  DP   G+Y +LSNI+A    W  VA +R  +++   Q+  G S
Sbjct: 398 VEIAEE---AMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRS 454

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           S+E +N VHEF   D+ HP+ E+IY+M+  +   L+  G+
Sbjct: 455 SIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGY 494



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 2/163 (1%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      +I   A+   +G+A ++F+  +D D   ++++I A  +   + +A  ++ +M
Sbjct: 145 RDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM 204

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           +  GV  D  +   +L AC+      +   +H  +       D+ +  +L+D Y+KCG +
Sbjct: 205 RVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDI 264

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             SL  K+F +M  +D+++W+SMI GL   G   +A  LF EM
Sbjct: 265 ENSL--KVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEM 305



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 108/269 (40%), Gaps = 76/269 (28%)

Query: 328 GLGMKVHASINKYRF-KCNTNVCNALVDMYAKC--------------------------- 359
           GLG  +HA   +  F   +  V  ALV+MYAK                            
Sbjct: 64  GLGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVML 123

Query: 360 ------GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ--------------------- 392
                 G +  A  VF+GM+ +DLVSWN M++G A+ G                      
Sbjct: 124 AAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSS 183

Query: 393 ----------GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
                      ++AL L+  M+  G  PD  + V VL AC+  G +  G +    +E + 
Sbjct: 184 MISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNR 243

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVEL 498
            +   ++    ++D+  + G ++ +L++  +MPV+ + + W +++         H+A+ L
Sbjct: 244 -VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVK-DVLTWSSMIIGLANHGLGHDALSL 301

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             E++      +G  P   T +  + A T
Sbjct: 302 FSEMIS-----QGLQPNEITFIGVLIACT 325



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 63/337 (18%), Positives = 133/337 (39%), Gaps = 65/337 (19%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           ++ D  +   L+   A C  +  ++KVF+ +   DV  ++++I     + L   A  +F 
Sbjct: 244 VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFS 303

Query: 105 DMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           +M  +G+  +  T+  +L AC       +GK +F  +  +H ++ +  ++G       ++
Sbjct: 304 EMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYG------CMV 357

Query: 158 DSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAG--LVKGGELSEAR----RLFDEMP 210
           D   + G   V  A +L  SM  + D + W +++    + K  E++E      ++ D + 
Sbjct: 358 DLLGRAG--HVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLA 415

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           +   V  + I   YA+A       E+ + I   NI                        R
Sbjct: 416 DGHYVLLSNI---YAQANSWEGVAEMRKTIRRENI-----------------------QR 449

Query: 271 MPAKTLVPWTIIISGYAE--------KGMAKEAARLYDQMEEAGLKP---------DDGT 313
           +P ++ + W   +  +          + + K    + D++ +AG +P         D+ +
Sbjct: 450 VPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQS 509

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
               LA  +E   +  G+ V  + +  R   N   C 
Sbjct: 510 KKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACE 546


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 206/574 (35%), Positives = 322/574 (56%), Gaps = 12/574 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++ ++ K +   +IKL    DP+ A  L+   A    +  AI VF  I+ PD+  +N +I
Sbjct: 272 RDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVI 331

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV +  + QA  +   M+  G+  + FT    LKAC G     L + +H+ + K    
Sbjct: 332 AGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDME 391

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+FV   L+D YSKC ++    A+  F  + E+D+++WN++I+G  +  E  EA  LF 
Sbjct: 392 SDLFVSVGLVDMYSKCDLL--EDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFV 449

Query: 208 EMPERDAVSWN-----TILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKD 258
           EM  ++ + +N     TIL   A    +++  ++     +   H +I   ++++  Y K 
Sbjct: 450 EM-HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC 508

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +E A+ +F+      LV +T +I+ YA+ G  +EA +L+ +M++  LKPD     S+L
Sbjct: 509 SHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLL 568

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA       G ++H  I KY F  +    N+LV+MYAKCGS+D+A   F+ +T++ +V
Sbjct: 569 NACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIV 628

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW+AM+ GLA HG G +AL LF++M  EG  P+  T V VL AC HAG + +   YF SM
Sbjct: 629 SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESM 688

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           E  +G  P  EHY CMIDLLGR+G++ EA+ LV  MP E NA +WG LLGA R H  VEL
Sbjct: 689 EELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVEL 748

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
                + L  L+    G + +L+NI+A+ G W  VA VR  M+ ++ +K  G S +EV +
Sbjct: 749 GRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKD 808

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +V+ F V D+ H +S++IY  ++ L   +   G+
Sbjct: 809 KVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGY 842



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 161/568 (28%), Positives = 252/568 (44%), Gaps = 109/568 (19%)

Query: 7   APTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66
            PT  S  +LL +        K+L    Q+ A I K  L  DP I   LI+  + CR  G
Sbjct: 53  TPTSVSYSKLLSQCCTT----KSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFG 108

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
            A K+ ++  +PD+  ++ LI    QN L   A   F +M   GV  + FT+  +LKAC+
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                 + + +H ++   G+ GD+FV N+L+  Y+KC     S  K+LF  + ER++VSW
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS--KRLFDEIPERNVVSW 226

Query: 187 NSMIAGLVKGGELSEARRLFDEM------PER---------------------------- 212
           N++ +  V+     EA  LF EM      P                              
Sbjct: 227 NALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 213 -----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                D  S N ++D YAK G++  A  +FEKI   +IVSW+                  
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNA----------------- 329

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
                         +I+G       ++A  L  QM+ +G+ P+  TL S L ACA  GL 
Sbjct: 330 --------------VIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLK 375

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++H+S+ K   + +  V   LVDMY+KC  L++A   FN + +KDL++WNA++ G 
Sbjct: 376 ELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 435

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL-----------CACTHAGFIDKG----V 432
           + + +  +AL LF  M  EG G ++ T   +L           C   H   +  G    +
Sbjct: 436 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 495

Query: 433 QYFYSMERDYGILPQVE---------------HYGCMIDLLGRSGRLKEALRL---VQSM 474
               S+   YG    VE                +  MI    + G+ +EAL+L   +Q M
Sbjct: 496 YVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM 555

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEV 502
            ++P+  +  +LL AC   +A E  +++
Sbjct: 556 ELKPDRFVCSSLLNACANLSAFEQGKQL 583



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/513 (27%), Positives = 235/513 (45%), Gaps = 45/513 (8%)

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           LI+   Q S + Q   + L++ +KG FT  + +Y  LL  C           IHA I K 
Sbjct: 27  LIQTVPQFSQDPQTTAI-LNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS 85

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   D  + N LI+ YSKC   G   A+KL     E D+VSW+++I+G  + G    A  
Sbjct: 86  GLSDDPSIRNHLINLYSKCRNFG--YARKLVDESSEPDLVSWSALISGYAQNGLGGGALM 143

Query: 205 LFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYS 256
            F EM     + +  +++++L   +   ++ +  ++   +       ++   +T+V  Y+
Sbjct: 144 AFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYA 203

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K  +   +K LFD +P + +V W  + S Y +     EA  L+ +M  +G+KP++ +L S
Sbjct: 204 KCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSS 263

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++ AC        G  +H  + K  +  +    NALVDMYAK G L +A+SVF  + + D
Sbjct: 264 MVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPD 323

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSWNA++ G  +H   E+AL L  +MK  G  P+ +T    L AC   G  + G Q   
Sbjct: 324 IVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHS 383

Query: 437 S---MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           S   M+ +  +   V     ++D+  +   L++A R+  ++  E + I W  ++    ++
Sbjct: 384 SLMKMDMESDLFVSVG----LVDMYSKCDLLEDA-RMAFNLLPEKDLIAWNAIISGYSQY 438

Query: 494 NAVELAEEVLDCLIRLKGSDPG-NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
                  E L   + +     G N T LS I  +T                     +G  
Sbjct: 439 WE---DMEALSLFVEMHKEGIGFNQTTLSTILKST---------------------AGLQ 474

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
            V V  +VH  SV    H     +  +I++ GK
Sbjct: 475 VVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGK 507


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 191/568 (33%), Positives = 326/568 (57%), Gaps = 17/568 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q++A+++   LQ   ++  KL++  +   ++  A K+F+   DPDV L+N ++R   ++ 
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
               A  ++  MQ   V  D F++P +LKAC+      + + +H  I++ G+  D+FV N
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQN 212

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
            L+  Y+KCG   +  A  +F  + +R IVSW S+I+G  + G+  EA R+F EM +   
Sbjct: 213 GLVALYAKCG--EIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNV 270

Query: 213 --DAVSWNTILDGYAKAGEMN-------LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
             D ++  ++L  Y    ++           ++  +     ++S +++   Y+K G + +
Sbjct: 271 RPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSL---YAKCGHVMV 327

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+L F+++   +L+ W  +ISGY + G A+EA  L+  M+   ++PD  T+ S +AACA+
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQ 387

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L L   +   I+   F+ +  V  +L+D YAKCGS+D A  VF+ +  KD+V W+AM
Sbjct: 388 IGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAM 447

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G  +HGQG +++ LF  M+  G  P+  TFVG+L AC ++G +++G   F+ M RDYG
Sbjct: 448 MVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYG 506

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P+ +HY C++DLLGR+G L  A   V +MP+EP   +WG LL AC+ H  V L E   
Sbjct: 507 IEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAA 566

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L  L   + G+Y  LSN++A++  W+ VA VR+ M++    K  G S +E++ ++  F
Sbjct: 567 ERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAF 626

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVG 591
              D+ HP+S++I++ +  L + LK  G
Sbjct: 627 QAGDKTHPRSKEIFEEVEDLERRLKEAG 654



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 179/370 (48%), Gaps = 11/370 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   +++  QI +   + D ++   L++  A C ++  A  VF  + D  +  + ++I  
Sbjct: 189 LEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISG 248

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN    +A R+F +M++  V  D      +L+A          + IH  + K G   +
Sbjct: 249 YAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECE 308

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             +  SL   Y+KCG V V  A+  F  +    ++ WN+MI+G VK G   EA  LF  M
Sbjct: 309 FDLLISLTSLYAKCGHVMV--ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLM 366

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDM 261
             +    D+++  + +   A+ G + LA  + E I       +++  ++++  Y+K G +
Sbjct: 367 KSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSV 426

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           +MA+ +FDR+P K +V W+ ++ GY   G  +E+  L+  M +AG+ P+D T + +L AC
Sbjct: 427 DMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTAC 486

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-W 380
             SGL+  G  +   +  Y  +        +VD+  + G LD A +    M  +  VS W
Sbjct: 487 KNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVW 546

Query: 381 NAMLYGLAMH 390
            A+L    +H
Sbjct: 547 GALLSACKIH 556



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 113/237 (47%), Gaps = 10/237 (4%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           P W +    L   L+     ++L   K +   +IK+ L+ +  +   L S  A C  + +
Sbjct: 272 PDWIA----LVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMV 327

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A   FN +++P +  +N +I   V+N    +A  +F  M+ K +  D+ T    + AC  
Sbjct: 328 ARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQ 387

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L + +   I    +  D+ V  SLID+Y+KCG   V +A+ +F  + ++D+V W+
Sbjct: 388 IGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCG--SVDMARFVFDRIPDKDVVVWS 445

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI 240
           +M+ G    G+  E+  LF  M +     + V++  +L     +G +   ++LF ++
Sbjct: 446 AMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM 502


>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 737

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 190/510 (37%), Positives = 282/510 (55%), Gaps = 37/510 (7%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y FL+  C       L   +H  + K   F D F+ N LID+YSKCG      A K F  
Sbjct: 13  YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCE--ESAHKTFGD 70

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS--------------------- 216
           +  +   SWN++I+   K G   EA  LFD+MP+R+ VS                     
Sbjct: 71  LPNKTTRSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQWLRQVHGVAVI 130

Query: 217 ----WNTIL-----DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
               WN IL     D Y K GE NL+F +F  +P RN+VSW++MV  Y++   ++ A  +
Sbjct: 131 VGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRACRLDEACRV 190

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  MP K  V WT +++G+   G   EA  ++ QM E G++P   T +S++ ACA+  L+
Sbjct: 191 FKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACAQEALI 250

Query: 328 GLGMKVHASI---NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
           G G +VH  I   +K     N  VCNAL+DMYAKCG + +A ++F     +D+V+WN ++
Sbjct: 251 GRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLI 310

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A +G GE++L +F RM +    P+  TF+GVL  C HAG  ++G+Q    MER YG+
Sbjct: 311 TGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGV 370

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--VEPNAIIWGTLLGACRKHNAVELAEEV 502
            P+ EHY  +IDLLGR  RL EA+ L++ +P  ++ +  +WG +LGACR H  ++LA + 
Sbjct: 371 KPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKA 430

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + L  L+  + G Y ML+NI+AA+G W     +R  MK+   +K    S +E+ N  HE
Sbjct: 431 AEKLFELEPENTGRYVMLANIYAASGKWGGAKRIRNVMKERCLEKEPACSRIELRNARHE 490

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F   D+ HP+ E+I ++ + L    K  G+
Sbjct: 491 FVAKDKFHPQVEEICEVNSKLVLHSKDAGY 520



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 188/417 (45%), Gaps = 60/417 (14%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           + KC    + K    +   +IK  L  D ++A  LI + + C     A K F D+ +   
Sbjct: 17  ISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLPNKTT 76

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NTLI    +     +A  +F  M ++ V + N      L+      W   ++ +H +
Sbjct: 77  RSWNTLISFYSKTGFFDEAHNLFDKMPQRNVVSYNSLISGNLQ------W---LRQVHGV 127

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
               G   ++ + N+LID+Y KCG   +S +  +F  M ER++VSW SM+    +   L 
Sbjct: 128 AVIVGMEWNVILNNALIDAYGKCGEPNLSFS--VFCYMPERNVVSWTSMVVAYTRACRLD 185

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----------------- 243
           EA R+F +MP ++ VSW  +L G+ + G  + AF++F+++                    
Sbjct: 186 EACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSVIDACA 245

Query: 244 -------------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                                    N+   + ++  Y+K GDM+ A+ LF+  P + +V 
Sbjct: 246 QEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVT 305

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK-VHASI 337
           W  +I+G+A+ G  +E+  ++ +M EA ++P+  T + +L+ C  +GL   G++ V    
Sbjct: 306 WNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGLQLVDLME 365

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM---TKKDLVSWNAMLYGLAMHG 391
            +Y  K        L+D+  +   L  AMS+   +    K  +  W A+L    +HG
Sbjct: 366 RQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHG 422



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 137/323 (42%), Gaps = 38/323 (11%)

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           CR +  A +VF D+   +   +  L+   V+N    +AF VF  M E+GV     T+  +
Sbjct: 182 CR-LDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEGVRPSAPTFVSV 240

Query: 122 LKACNGKNWFHLVQMIHALIY---KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
           + AC  +      + +H  I    K G   +++V N+LID Y+KCG   +  A+ LF   
Sbjct: 241 IDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCG--DMKSAENLFEMA 298

Query: 179 GERDIVSWNSMIAGLVKGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
             RD+V+WN++I G  + G   E+    RR+ +   E + V++  +L G   AG  N   
Sbjct: 299 PMRDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGL 358

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           +L + +  +           Y      E   LL D +                 +    E
Sbjct: 359 QLVDLMERQ-----------YGVKPKAEHYALLIDLL---------------GRRNRLME 392

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L +++ + G+K       ++L AC   G L L  K    + +   + NT     L +
Sbjct: 393 AMSLIEKVPD-GIKNHIAVWGAVLGACRVHGNLDLARKAAEKLFELEPE-NTGRYVMLAN 450

Query: 355 MYAKCGSLDNAMSVFNGMTKKDL 377
           +YA  G    A  + N M ++ L
Sbjct: 451 IYAASGKWGGAKRIRNVMKERCL 473


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 213/620 (34%), Positives = 334/620 (53%), Gaps = 49/620 (7%)

Query: 8   PTWFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ- 64
           P W S   +      L  L  C ++ Q KQ+ A I    L    + A +L++  AL    
Sbjct: 41  PKWNSLSNVFISNPTLLILQSCSSMFQLKQIQAHITCTGLMNQIFPASRLLAFCALSDSG 100

Query: 65  -MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
            +  A  +F+  + P+   +NT+I+   + +  +  F  F  M       D+ ++ F LK
Sbjct: 101 DIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQMIRNRAEFDSGSFVFALK 160

Query: 124 ACNGKNWFHLVQM-IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
           AC G+    +V M +H++I+K G+  D+FV N LI +Y + G +G   A+++F     +D
Sbjct: 161 AC-GQFAEKIVGMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLG--FARQMFDESSVKD 217

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS-------------------------- 216
           +V+W +MI G  +   L EA  LF+ M   D                             
Sbjct: 218 VVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMIALLSACSQKGDSEMGKTLHE 277

Query: 217 -------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
                         N +LD Y K G +  A E+F  +  R++ SW++++ GY+K+GD+  
Sbjct: 278 HIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGS 337

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA-GLKPDDGTLISILAACA 322
           A+ LFD MP + +V W  +I+GY++     EA  L+  M +  GL P + TL+ +L+A  
Sbjct: 338 ARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASG 397

Query: 323 ESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           + G L +G ++H + +NK   + +  + NA++DMYAKCGS+D A  +F+ M +K+LVSWN
Sbjct: 398 QLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWN 457

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+   A +G  +KAL LF +M   G  PD  TF+GVL AC++ GF+ +G  +F SME  
Sbjct: 458 SMISAYASYGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENC 517

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +G+ P+ EHY CM+DLL R G LKEA  L+  MP+E +   WG LL ACRKH  VE+A+ 
Sbjct: 518 FGVEPKREHYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKL 577

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             + L+ L   D G Y++L+NI A    W  V  VR  M++   +K  G S +E++ + H
Sbjct: 578 AGEKLLELDPEDSGIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIEGKFH 637

Query: 562 EFSVCDQLHPKSEQIYQMIN 581
           EF V D  H +S +IY+++N
Sbjct: 638 EFLVADTSHTRSSEIYRVVN 657


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 198/521 (38%), Positives = 291/521 (55%), Gaps = 38/521 (7%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           D  L+N +I++        QA  +   M E  V  D F+   + KAC+   +      IH
Sbjct: 49  DPFLWNAVIKSHSHGVDPRQALFLLCSMIENNVPVDKFSLSLVTKACSRLGFAKEGMQIH 108

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             + K     D+F+ N LI  Y KC  +G   A+++F  M +RD VS+NSMI G VK G 
Sbjct: 109 GFLTKTVICSDLFLQNCLIGLYIKCSCLG--YARQVFDRMPQRDSVSYNSMIDGYVKCGL 166

Query: 199 LSEARRLFD----------------------------------EMPERDAVSWNTILDGY 224
           +  AR LFD                                  EMPE+D +SWN+++DGY
Sbjct: 167 IESARELFDLMPKEKKNLISWNSMIGGYAQREDGVDIASKLFAEMPEKDLISWNSLIDGY 226

Query: 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
            K G +  A  LF+ +P R++V+W+TM+ GY+K G +  AK LFD MP + +V +  ++ 
Sbjct: 227 VKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMG 286

Query: 285 GYAEKGMAKEAARL-YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           GY +     EA  + YD  +E+ L PD+ TL+ +L+A A+ G L   + +H  I + RF 
Sbjct: 287 GYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFL 346

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  +  AL+DMY+KCGS+  AM+VF G+  K +  WNAM+ GLA+HG GE A  +   +
Sbjct: 347 LDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEI 406

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           +     PD  TFVGVL AC+H+G + +G+  F  M R + I P+++HYGCM+DLL RSG 
Sbjct: 407 EKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDLLARSGS 466

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL-DCLIRLKGSDPGNYTMLSN 522
           ++ A  L+  MP+EPN +IW T L AC  H   E  E V+ + LI   G +P +Y +LSN
Sbjct: 467 IELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSN 526

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           ++A+   W  V  VR  MK+ + +K  G S +E+D +VHEF
Sbjct: 527 MYASFEMWEDVRRVRTMMKERKIEKVPGCSWIELDGKVHEF 567



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 131/292 (44%), Gaps = 17/292 (5%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      +I   A    +  A  +F+ +   DV  YN+++   VQN  + +A  VF D
Sbjct: 244 RRDVVTWATMIDGYAKLGFVHKAKSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYD 303

Query: 106 MQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           M+ E  +  D  T   +L A            IH  I +  +  D  +  +LID YSKCG
Sbjct: 304 MEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCG 363

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTI 220
            +  ++A  +F  +  + I  WN+MI GL   G    A  +  E+ +R    D +++  +
Sbjct: 364 SIQQAMA--VFEGIENKSIDHWNAMIGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGV 421

Query: 221 LDGYAKAG---EMNLAFELF---EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           L+  + +G   E  L FEL     KI  R +  +  MV   ++ G +E+AK L   MP +
Sbjct: 422 LNACSHSGLVKEGLLCFELMRRKHKIEPR-LQHYGCMVDLLARSGSIELAKHLISEMPIE 480

Query: 275 -TLVPWTIIISG--YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
              V W   ++   + ++   +E     + + +AG  P    L+S + A  E
Sbjct: 481 PNDVIWRTFLNACSHHKEFETRELVVAENLILQAGYNPSSYVLLSNMYASFE 532


>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Brachypodium distachyon]
          Length = 554

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 192/584 (32%), Positives = 324/584 (55%), Gaps = 72/584 (12%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           + R++ +  + +L  C +     ++ A  ++L L +  Y+A +++       ++  A +V
Sbjct: 8   ATRQVEDAVMASLRACASFRDLLRVHAHAVRLSLSQSSYLATQIVHLCNAHGRVAHATRV 67

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-------DNFTYPFLLKA 124
           F+ +++P++HL+N +I+A  QN  +  A  V++ M  +  F        D FTYPF    
Sbjct: 68  FSQVREPNLHLHNAMIKAYAQNHRHLDAITVYIRMLRRRPFPWISCTGGDRFTYPF---- 123

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
                          L+  CG                  G++ + L K++          
Sbjct: 124 ---------------LLKACG------------------GLMALDLGKQVH--------- 141

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
                   +V+ G             E +A+  N++++ Y +AG++ LA ++F+ +  R+
Sbjct: 142 ------GHVVRSG------------CESNAIVQNSLIEMYTRAGDLVLARKVFDGMQERD 183

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           +VSW+T++  +++ G M  A+ +F+ MP KT+V WT ++SGY   G    A   +  M+ 
Sbjct: 184 VVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVEAFRLMQM 243

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G +PDD +++++L ACA+ G L LG  ++A  N+++    T VCNALV+MYAKCG +D 
Sbjct: 244 EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQMLRETYVCNALVEMYAKCGCIDQ 303

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACT 423
           A+ +FNGM +KD++SW+ M+ GLA HG+ ++A+ LF+ M+ +G   P+  TFVG+L AC+
Sbjct: 304 ALQLFNGMAEKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNGITFVGLLSACS 363

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
           HAG +D+G+ YF  M   YGI P VEHYGC++DLL RSG+++  L L+  MP+  +A IW
Sbjct: 364 HAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLISDMPLPADAKIW 423

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543
           G++L ACR H  V+ A    + L+ L+  D GN  ML+N++AA   W++VAN R  ++  
Sbjct: 424 GSVLNACRSHGDVDTAVLAAERLVALEPEDVGNLVMLANVYAAARRWSEVANTRKAIRSR 483

Query: 544 RAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
             +K  G S +EVDN V EF   + L P+   +  +++ L   L
Sbjct: 484 SMRKTPGCSLIEVDNVVQEFVAGEDLKPEFGGLSGVLDILASQL 527


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 316/603 (52%), Gaps = 73/603 (12%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++ K++    ++  L  D  +   L++    C  +  A + F  I D DV +YN LI A
Sbjct: 245 LDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAA 304

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+  N +AF  +  M+  GV  +  TY  +L AC+        ++IH+ I + G+  D
Sbjct: 305 LAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSD 364

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + + N+LI  Y++CG                                 +L +AR LF  M
Sbjct: 365 VQIGNALISMYARCG---------------------------------DLPKARELFYTM 391

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFE------------------------------K 239
           P+RD +SWN I+ GYA+  +   A  L++                              K
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 240 IPHRNIVSWSTMVWG---------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + H +I+       G         Y + G +  A+ +F+   A+ ++ W  +I+G+A+ G
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             + A +L+ +M+   L+PD+ T  S+L+ C     L LG ++H  I +   + + N+ N
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN 571

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-G 409
           AL++MY +CGSL +A +VF+ +  +D++SW AM+ G A  G+  KA+ LF +M++EGF  
Sbjct: 572 ALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRP 631

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           PD  TF  +L AC HAG + +G Q F SME +YG+LP +EHYGC++ LLGR+ R +EA  
Sbjct: 632 PDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAET 691

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           L+  MP  P+A +W TLLGACR H  + LAE   +  ++L   +P  Y +LSN++AA G 
Sbjct: 692 LINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGR 751

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           W+ VA +R  M+    +K  G S +EVDN +HEF   D+ HP++ +IY  +  L  +++ 
Sbjct: 752 WDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEE 811

Query: 590 VGH 592
            G+
Sbjct: 812 AGY 814



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 253/523 (48%), Gaps = 43/523 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQN  + + L + K++ AQ+++  +  D +++  LI+    CR +  A +VF ++   DV
Sbjct: 34  LQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDV 93

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N+LI    Q     +AF++F +MQ  G   +  TY  +L AC         + IH+ 
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQ 153

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K GY  D  V NSL+  Y KCG   +  A+++F  +  RD+VS+N+M+    +   + 
Sbjct: 154 IIKAGYQRDPRVQNSLLSMYGKCG--DLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVK 211

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMV 252
           E   LF +M       D V++  +LD +     ++    +     E+  + +I   + +V
Sbjct: 212 ECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALV 271

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
               + GD++ AK  F  +  + +V +  +I+  A+ G   EA   Y +M   G+  +  
Sbjct: 272 TMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRT 331

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T +SIL AC+ S  L  G  +H+ I++     +  + NAL+ MYA+CG L  A  +F  M
Sbjct: 332 TYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--------- 423
            K+DL+SWNA++ G A      +A+ L+ +M+ EG  P + TF+ +L AC          
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 424 --HAGFIDKGVQY-------FYSMERDYGILPQVEH------------YGCMIDLLGRSG 462
             H   +  G++          +M R  G L + ++            +  MI    + G
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 463 RLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEV 502
             + A +L Q M    +EP+ I + ++L  C+   A+EL +++
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQI 554



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 208/423 (49%), Gaps = 15/423 (3%)

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           Q +   TD  TY  LL+ C  K      + IHA + + G   DIF+ N LI+ Y KC   
Sbjct: 19  QPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKC--R 76

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
            V  A ++F  M  RD++SWNS+I+   + G   +A +LF+EM       + +++ +IL 
Sbjct: 77  SVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILT 136

Query: 223 GYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                 E+    ++  +I      R+    ++++  Y K GD+  A+ +F  +  + +V 
Sbjct: 137 ACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVS 196

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           +  ++  YA+K   KE   L+ QM   G+ PD  T I++L A     +L  G ++H    
Sbjct: 197 YNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTV 256

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           +     +  V  ALV M  +CG +D+A   F G+  +D+V +NA++  LA HG   +A  
Sbjct: 257 EEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFE 316

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
            + RM+ +G   ++ T++ +L AC+ +  ++ G +  +S   + G    V+    +I + 
Sbjct: 317 QYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMY 375

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
            R G L +A  L  +MP + + I W  ++ G  R+ +  E     L   ++ +G  PG  
Sbjct: 376 ARCGDLPKARELFYTMP-KRDLISWNAIIAGYARREDRGEAMR--LYKQMQSEGVKPGRV 432

Query: 518 TML 520
           T L
Sbjct: 433 TFL 435


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  362 bits (929), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 306/574 (53%), Gaps = 69/574 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  CK+LN   Q+ AQII    +    I   LI+  +L  +  LA  VF+   +P   L+
Sbjct: 59  LSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDLARSVFDSTPNPSRILW 117

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N++IRA  ++    +A  ++  M EKG                                 
Sbjct: 118 NSMIRAYTRSKQYNEALEMYYCMVEKG--------------------------------- 144

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+F+   L+D YSK G   +  A+++F  M +RD+V+WN+MIAGL +  +   AR
Sbjct: 145 -GLERDVFIGAGLVDMYSKMG--DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPYVAR 201

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           R+FD+M ++D VSW T++ GYA  G      ELF+K+   N V+W+ ++           
Sbjct: 202 RVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVII----------- 249

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
                               + Y + G AKEA   + QM      P+  T +S+L A A 
Sbjct: 250 --------------------AAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAY 289

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
                 GM  HA I +  F  NT V N+L+DMYAKCG LD +  +FN M  KD VSWNAM
Sbjct: 290 LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAM 349

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           L G A+HG G++A+ LFS M++     D  +FV VL AC HAG +++G + F+SM   Y 
Sbjct: 350 LSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYH 409

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P +EHY CM+DLLGR+G   E L  ++ MPVEP+A +WG LLG+CR H+ V+L E  L
Sbjct: 410 IKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVAL 469

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           D L++L+  +P ++ +LS+I+A +G W      R +M     +K  G S VE+ N+VH F
Sbjct: 470 DHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAF 529

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            V D+ HP+ E ++ + NTL + ++ +G+    S
Sbjct: 530 RVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRS 563


>gi|356530245|ref|XP_003533693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Glycine max]
          Length = 581

 Score =  362 bits (928), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/569 (32%), Positives = 329/569 (57%), Gaps = 47/569 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  + + ++LF    + D +++      +++      Q+  A ++F ++   +V  +NT
Sbjct: 44  KCGMIREARKLFD---RWDAKKNVVTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNT 100

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++    +N L  QA  +F  M E+ V +                W               
Sbjct: 101 MVDGYARNGLTQQALDLFRRMPERNVVS----------------W--------------- 129

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                   N++I +  +CG   +  A++LF  M +RD+VSW +M+AGL K G + +AR L
Sbjct: 130 --------NTIITALVQCG--RIEDAQRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARAL 179

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD+MP R+ VSWN ++ GYA+   ++ A +LF+++P R++ SW+TM+ G+ ++G++  A+
Sbjct: 180 FDQMPVRNVVSWNAMITGYAQNRRLDEALQLFQRMPERDMPSWNTMITGFIQNGELNRAE 239

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAES 324
            LF  M  K ++ WT +++GY + G+++EA R++ +M     LKP+ GT +++L AC++ 
Sbjct: 240 KLFGEMQEKNVITWTAMMTGYVQHGLSEEALRVFIKMLATNELKPNTGTFVTVLGACSDL 299

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG--MTKKDLVSWNA 382
             L  G ++H  I+K  F+ +T V +AL++MY+KCG L  A  +F+   ++++DL+SWN 
Sbjct: 300 AGLTEGQQIHQMISKTVFQDSTCVVSALINMYSKCGELHTARKMFDDGLLSQRDLISWNG 359

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G++A+ LF+ M++ G   +  TFVG+L AC+H G +++G +YF  + ++ 
Sbjct: 360 MIAAYAHHGYGKEAINLFNEMQELGVCANDVTFVGLLTACSHTGLVEEGFKYFDEILKNR 419

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I  + +HY C++DL GR+GRLKEA  +++ +  E    +WG LL  C  H   ++ + V
Sbjct: 420 SIQLREDHYACLVDLCGRAGRLKEASNIIEGLGEEVPLTVWGALLAGCNVHGNADIGKLV 479

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + +++++  + G Y++LSN++A+ G W + ANVR++MK    +K  G S +EV N V  
Sbjct: 480 AEKILKIEPQNAGTYSLLSNMYASVGKWKEAANVRMRMKDMGLKKQPGCSWIEVGNTVQV 539

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           F V D+ H + E +  +++ L   +K  G
Sbjct: 540 FVVGDKPHSQYEPLGHLLHDLHTKMKKAG 568



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 179/389 (46%), Gaps = 60/389 (15%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNI 245
           N  I+ L + GE+  AR++F+EMPERD   W T++ GY K G +  A +LF++    +N+
Sbjct: 5   NLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAKKNV 64

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           V+W+ MV GY K   ++ A+ LF  MP + +V W  ++ GYA  G+ ++A  L+ +M E 
Sbjct: 65  VTWTAMVNGYIKFNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPER 124

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
                                                  N    N ++    +CG +++A
Sbjct: 125 ---------------------------------------NVVSWNTIITALVQCGRIEDA 145

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             +F+ M  +D+VSW  M+ GLA +G+ E A  LF +M          ++  ++      
Sbjct: 146 QRLFDQMKDRDVVSWTTMVAGLAKNGRVEDARALFDQMPVRNV----VSWNAMITGYAQN 201

Query: 426 GFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
             +D+ +Q F  M ERD   +P    +  MI    ++G L  A +L   M  E N I W 
Sbjct: 202 RRLDEALQLFQRMPERD---MPS---WNTMITGFIQNGELNRAEKLFGEMQ-EKNVITWT 254

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLSNIFAATGDWNKVANVRLQMK 541
            ++    +H    L+EE L   I++  ++   P   T ++ +  A  D   +   + Q+ 
Sbjct: 255 AMMTGYVQHG---LSEEALRVFIKMLATNELKPNTGTFVT-VLGACSDLAGLTEGQ-QIH 309

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
           +  ++     S+  V   ++ +S C +LH
Sbjct: 310 QMISKTVFQDSTCVVSALINMYSKCGELH 338



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 12/180 (6%)

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
           CN  +    + G +D A  VF  M ++D+  W  M+ G    G   +A  LF R   +  
Sbjct: 4   CNLFISRLCREGEIDYARKVFEEMPERDIGLWTTMITGYLKCGMIREARKLFDRWDAK-- 61

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
             +  T+  ++        + +  + FY M      L  V  +  M+D   R+G  ++AL
Sbjct: 62  -KNVVTWTAMVNGYIKFNQVKEAERLFYEMP-----LRNVVSWNTMVDGYARNGLTQQAL 115

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            L + MP E N + W T++ A  +   +E A+ + D   ++K  D  ++T +    A  G
Sbjct: 116 DLFRRMP-ERNVVSWNTIITALVQCGRIEDAQRLFD---QMKDRDVVSWTTMVAGLAKNG 171


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 194/571 (33%), Positives = 315/571 (55%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN  +++  ++++  L  D  +   LIS  A C  +  A +VF+ +   D   + TL  A
Sbjct: 145 LNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGA 204

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             ++    ++ + +  M ++ V     TY  +L AC         + IHA I +  Y  D
Sbjct: 205 YAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSD 264

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V  +L   Y KCG      A+++F  +  RD+++WN+MI G V  G+L EA   F  M
Sbjct: 265 VRVSTALTKMYMKCG--AFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM 322

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
            E     D  ++ T+L   A+ G +    E+  +     +VS     + ++  YSK G M
Sbjct: 323 LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSM 382

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ +FDRMP + +V WT ++  YA+     E+   + QM + G+K +  T + +L AC
Sbjct: 383 KDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKAC 442

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           +    L  G ++HA + K     +  V NAL+ MY KCGS+++A+ VF GM+ +D+V+WN
Sbjct: 443 SNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWN 502

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            ++ GL  +G+G +AL  +  MK EG  P+  TFV VL AC     +++G + F  M +D
Sbjct: 503 TLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKD 562

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI+P  +HY CM+D+L R+G L+EA  ++ ++P++P+A +WG LL ACR H  VE+ E 
Sbjct: 563 YGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEIGER 622

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             +  ++L+  + G Y  LS I+AA G W  VA +R  MK+   +K  G S +E+  EVH
Sbjct: 623 AAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAGEVH 682

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F   DQ HP++++IY  + TL K +K +G+
Sbjct: 683 SFVARDQSHPRTQEIYAELETLKKQMKSLGY 713



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 204/391 (52%), Gaps = 12/391 (3%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           +  KG   D++ Y  LL++C       + + +H  I +CG   ++++ N+L+  Y+ CG 
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCG- 77

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF----DEMPERDAVSWNTIL 221
             V+ A++LF     + +VSWN MI+G    G   EA  LF     E  E D  ++ +IL
Sbjct: 78  -SVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSIL 136

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWST----MVWGYSKDGDMEMAKLLFDRMPAKTLV 277
              +    +N   E+  ++    + + +T    ++  Y+K G +  A+ +FD M ++  V
Sbjct: 137 SACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEV 196

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +   YAE G  +E+ + Y  M +  ++P   T +++L+AC     L  G ++HA I
Sbjct: 197 SWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHI 256

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            +  +  +  V  AL  MY KCG+  +A  VF  ++ +D+++WN M+ G    GQ E+A 
Sbjct: 257 VESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAH 316

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
           G F RM +EG  PD+ T+  VL AC   G + +G +      +D G++  V     +I++
Sbjct: 317 GTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDVRFGNALINM 375

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
             ++G +K+A ++   MP + + + W TLLG
Sbjct: 376 YSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 164/618 (26%), Positives = 280/618 (45%), Gaps = 63/618 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ+  K K+L   KQ+   I++  ++ + YI   L+   A C  +  A ++F+   +  V
Sbjct: 35  LQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFSNKSV 94

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N +I       L  +AF +F  MQ++ +  D FT+  +L AC+     +  + IH  
Sbjct: 95  VSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVR 154

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G   D  V N+LI  Y+KCG   V  A+++F +M  RD VSW ++     + G   
Sbjct: 155 VMEAGLANDTTVGNALISMYAKCG--SVRDARRVFDAMASRDEVSWTTLTGAYAESGYGE 212

Query: 201 EARRLFDEM-PERDAVSWNTILDGYAKAGEM-------NLAFELFEKIPHRNIVSWSTMV 252
           E+ + +  M  ER   S  T ++  +  G +        +   + E   H ++   + + 
Sbjct: 213 ESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALT 272

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G  + A+ +F+ +  + ++ W  +I G+ + G  +EA   + +M E G+ PD  
Sbjct: 273 KMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRA 332

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T  ++L+ACA  G L  G ++HA   K     +    NAL++MY+K GS+ +A  VF+ M
Sbjct: 333 TYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRM 392

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--------- 423
            K+D+VSW  +L   A   Q  ++   F +M  +G   +K T++ VL AC+         
Sbjct: 393 PKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGK 452

Query: 424 --HAGFIDKGV------------QYFYSMERDYGI-------LPQVEHYGCMIDLLGRSG 462
             HA  +  G+             YF     +  I       +  V  +  +I  LG++G
Sbjct: 453 EIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNG 512

Query: 463 RLKEALRLVQSMPVE---PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--NY 517
           R  EAL+  + M  E   PNA  +  +L ACR  N VE        + +  G  P   +Y
Sbjct: 513 RGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHY 572

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA------------SSVEVDNEVHEFSV 565
             + +I A  G   +  +V L    T   KPS A             +VE+     E   
Sbjct: 573 ACMVDILARAGHLREAEDVIL----TIPLKPSAAMWGALLAACRIHCNVEIGERAAEH-- 626

Query: 566 CDQLHPKSEQIYQMINTL 583
           C +L P++  +Y  ++ +
Sbjct: 627 CLKLEPQNAGLYVSLSAI 644



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           +   G + D    + +L +C ++  L +G +VH  I +   K N  + N L+ +YA CGS
Sbjct: 19  LHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGS 78

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           ++ A  +F+  + K +VSWN M+ G A  G  ++A  LF+ M+ E   PDK+TFV +L A
Sbjct: 79  VNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSA 138

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+    ++ G +    +  + G+         +I +  + G +++A R+  +M    + +
Sbjct: 139 CSSPAVLNWGREIHVRV-MEAGLANDTTVGNALISMYAKCGSVRDARRVFDAM-ASRDEV 196

Query: 482 IWGTLLGA 489
            W TL GA
Sbjct: 197 SWTTLTGA 204


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 192/589 (32%), Positives = 320/589 (54%), Gaps = 76/589 (12%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC----------RQ 64
           R    KL  L  C + +  K +   +++  L  D ++A +L++ LALC            
Sbjct: 10  RFKHPKLALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLA-LALCVDDSTFHKPTNL 68

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +G A  +F+ IQ+P++ ++N LIR     +  ++AF  +  M +  ++ DN T+PFL+KA
Sbjct: 69  LGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKA 128

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
                   + +  H+ I + G+  D++V NSL+  Y+ CG++                  
Sbjct: 129 STEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLI------------------ 170

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
                          + A R+F +MP RD VSW +++ GY K G +  A E+F+++PHRN
Sbjct: 171 ---------------AAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRN 215

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           + +WS M+ GY+K+   E                               +A  L++ M+ 
Sbjct: 216 LFTWSIMINGYAKNNCFE-------------------------------KAIDLFELMKR 244

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G+  ++  ++S++++CA  G L  G + H  + K     N  +  ALVDMY +CG ++ 
Sbjct: 245 EGVVANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEK 304

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A+ VF  +  KD +SW++++ GLA+HG   KA+  FS+M   GF P   T   VL AC+H
Sbjct: 305 AIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSH 364

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G +DKG++ + +M+RDYGI P++EHYGC++D+LGR+G+L EA   +  MPV+PNA I G
Sbjct: 365 GGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILG 424

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LLGAC+ +   E+AE V + LI +K    G Y +LSNI+A  G W K+ ++R  MK+  
Sbjct: 425 ALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKL 484

Query: 545 AQKPSGASSVEVDNEVHEFSVC-DQLHPKSEQIYQMINTLGKDLKPVGH 592
            +KP G S +E+D ++++FS+  DQ HP+  +I ++   +   ++ +G+
Sbjct: 485 VKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGY 533


>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
          Length = 567

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 198/551 (35%), Positives = 316/551 (57%), Gaps = 45/551 (8%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD---VHLYNTLIRACVQNSLN 96
           ++  DL+R P    +++  L     +  A+   +    P      L+N LIRA   ++  
Sbjct: 16  VVSGDLRRSPAHLRRIVPLLPSHPHLAAALCAVHFPLFPSSSATFLHNILIRASASSASP 75

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV-QMIHALIYKCGYFGDIFVPNS 155
             +F  F  +   G+  D FT P LL +      F      +HA   + G+  D+FV N+
Sbjct: 76  RLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNA 135

Query: 156 LIDSYSKCGVVGVSLAKKLFMS-MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           L+  Y    +   +  +++F S  G  D+VSWN++I G VK GE+  A+R+FDEMP R+ 
Sbjct: 136 LLAMYG--ALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNG 193

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPH-------------------------------- 242
           VSW+T++ GYA AGE+++A E+F+++P                                 
Sbjct: 194 VSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMP 253

Query: 243 -RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            RN+VSW+ M+ GYS + DM+ A+ LFD MP K +V WT +ISGYA+ G  ++   L+  
Sbjct: 254 VRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRA 313

Query: 302 ME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT--NVCNALVDMYAK 358
           M+ E+ ++P++ T++S+L+ACA    L  G  VHA I+K++   N   N+  AL+DMYAK
Sbjct: 314 MQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAK 373

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           CG  D A+ +FN + +K++ +WNA++  LAM+G  + ++  F +MK  G  P+  TFVGV
Sbjct: 374 CGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGV 433

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L AC+H G +D+G + F SM    G+ P+V+HYGCM+D+LGR+G L+EA  L++SMP+ P
Sbjct: 434 LTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAP 493

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCL--IRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           + +++G LLGACR H   ++AE V   +  + L     G + ++S+I+AA G W  V   
Sbjct: 494 DVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEA 553

Query: 537 RLQMKKTRAQK 547
           R  ++++  +K
Sbjct: 554 RQVVQRSGIRK 564



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 26/244 (10%)

Query: 24  LHKCKNLNQTKQ-----LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           L  C NL   ++      F    K+ L  +  +   LI   A C +  +A+K+FN +   
Sbjct: 331 LSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRK 390

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWF 131
           +V  +N LI     N     +   F  M+  G   ++ T+  +L AC+       G+  F
Sbjct: 391 NVSAWNALITRLAMNGNAQDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCF 450

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMI 190
                  ++   CG   ++     ++D   + G+  +  A++L  SM    D++ + +++
Sbjct: 451 ------QSMASTCGVQPEVKHYGCMVDMLGRAGL--LEEAEELIRSMPMAPDVMVFGALL 502

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNT-----ILDGYAKAGEMNLAFELFEKIPHRNI 245
                      A R+  E+   +  +  +     I D YA AG+     E  + +    I
Sbjct: 503 GACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGI 562

Query: 246 VSWS 249
             W+
Sbjct: 563 RKWT 566


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 203/526 (38%), Positives = 291/526 (55%), Gaps = 48/526 (9%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQM-GL--AIKVFNDIQDPDVHLYNTLIRAC 90
           + + AQ+IK  L    Y   KLI    L     GL  AI VF  IQ+P++ ++NT+ R  
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
             +S    A  +++ M   G+  + +T+PFLLK+C     F   Q IH  + K GY  D+
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           +V  SLI  Y + G   +  A+K+F     RD+VS+ ++I G    G +  A++LFDE+P
Sbjct: 124 YVHTSLISMYVQNG--RLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIP 181

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMV----------------- 252
            +D VSWN ++ GYA+ G    A ELF+ +   N+    STMV                 
Sbjct: 182 VKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQ 241

Query: 253 ---WG------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
              W                   YSK G++E A  LF+ +  K ++ W  +I GY    +
Sbjct: 242 VHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNL 301

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN---V 348
            KEA  L+ +M  +G  P+D T++SIL ACA  G + +G  +H  INK R K  TN   +
Sbjct: 302 YKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINK-RLKGVTNASSL 360

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             +L+DMYAKCG ++ A  VF+ M  + L SWNAM++G AMHG+   A  LFS+M+  G 
Sbjct: 361 LTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI 420

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PD  TFVG+L AC+H+G +D G   F SM +DY I P++EHYGCMIDLLG  G  KEA 
Sbjct: 421 DPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAK 480

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
            ++++MP+EP+ +IW +LL AC+ HN VEL E     LI+++   P
Sbjct: 481 EMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPETP 526



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 189/417 (45%), Gaps = 45/417 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++  K K   + +Q+   ++KL    D Y+   LIS      ++  A KVF+     DV
Sbjct: 95  LKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDV 154

Query: 81  HLYNTLI-----RACVQN--------------SLNA------------QAFRVFLDMQEK 109
             Y  LI     R  ++N              S NA            +A  +F DM + 
Sbjct: 155 VSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKT 214

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  D  T   ++ AC       L + +H  I   G+  ++ + N+LID YSKCG   V 
Sbjct: 215 NVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG--EVE 272

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A  LF  +  +D++SWN++I G        EA  LF EM       + V+  +IL   A
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 226 KAGEMNLAFELFEKIPHR--NIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPW 279
             G +++   +   I  R   + + S+++      Y+K GD+E AK +FD M  ++L  W
Sbjct: 333 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 392

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G A  A  L+ +M + G+ PDD T + +L+AC+ SG+L LG  +  S+++
Sbjct: 393 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 452

Query: 340 -YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
            Y+          ++D+   CG    A  +   M  + D V W ++L    MH   E
Sbjct: 453 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVE 509



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 141/298 (47%), Gaps = 21/298 (7%)

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYAE 288
           A  +FE I   N++ W+TM  G++   D   A  L+  M +  L+P    +  ++   A+
Sbjct: 41  AISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAK 100

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV-----HASINKYRFK 343
               +E  +++  + + G   D     S+++   ++G L    KV     H  +  Y   
Sbjct: 101 SKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY--- 157

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
                  AL+  YA  G ++NA  +F+ +  KD+VSWNAM+ G A  G  ++AL LF  M
Sbjct: 158 ------TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 211

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
                 PD+ T V V+ AC  +G I+ G Q    ++ D+G    ++    +IDL  + G 
Sbjct: 212 MKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWID-DHGFGSNLKIVNALIDLYSKCGE 270

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           ++ A  L + +  + + I W TL+G     N  + A  +   ++R  G  P + TMLS
Sbjct: 271 VETACGLFEGLSYK-DVISWNTLIGGYTHMNLYKEALLLFQEMLR-SGESPNDVTMLS 326



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/246 (23%), Positives = 110/246 (44%), Gaps = 18/246 (7%)

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L  A+SVF  + + +L+ WN M  G A+      AL L+  M   G  P+ YTF  +L +
Sbjct: 38  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKS 97

Query: 422 CTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           C  +    +G Q + + ++  Y +   V  +  +I +  ++GRL++A R V       + 
Sbjct: 98  CAKSKAFREGQQIHGHVLKLGYDLDLYV--HTSLISMYVQNGRLEDA-RKVFDQSSHRDV 154

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           + +  L+        +E A+++ D    +   D  ++  + + +A TG++ +   +   M
Sbjct: 155 VSYTALIKGYASRGYIENAQKLFD---EIPVKDVVSWNAMISGYAETGNYKEALELFKDM 211

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS--EQIYQMINT--LGKDLKPVGHAAKL 596
            KT   +P  ++ V V       S C Q        Q++  I+    G +LK V     L
Sbjct: 212 MKTNV-RPDESTMVTV------VSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDL 264

Query: 597 SAEIGE 602
            ++ GE
Sbjct: 265 YSKCGE 270


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 208/572 (36%), Positives = 311/572 (54%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + KQL + ++K  +  D      L+     C  +  A  +FN     +V L+N ++ 
Sbjct: 260 DLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q S  A++F +F  MQ  G+  + FTYP +L+ C       L + IH+L  K G+  
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFES 379

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK G +    A+K+   + +RD+VSW SMIAG V+     EA   F E
Sbjct: 380 DMYVSGVLIDMYSKYGCL--DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGD 260
           M +      N  L   A A     A     +I  R  VS        W+T+V  Y++ G 
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            E A  LF  +  K  + W  +ISG+ +  + K+A  ++ +M +AG K +  T IS ++A
Sbjct: 498 SEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISA 557

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G +VH    K      T V NAL+ +Y KCGS+++A  +F+ M+ ++ VSW
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSW 617

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG+G +AL LF +MK EG  P+  TF+GVL AC+H G +++G+ YF SM  
Sbjct: 618 NTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSN 677

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            YG+ P  +HY C++D+LGR+G+L  A R V  MP+  NA+IW TLL AC+ H  +E+ E
Sbjct: 678 VYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGE 737

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A TG W     VR  MK    +K  G S +EV N V
Sbjct: 738 LAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP S+QIY+ ++ L   L  +G+
Sbjct: 798 HAFFVGDRLHPLSDQIYKFLSELNDRLSKIGY 829



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/522 (25%), Positives = 245/522 (46%), Gaps = 17/522 (3%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L    K K   Q + + AQ+ K     + ++   LI+         LA +VF D+
Sbjct: 146 VLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDM 205

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q      A ++F +MQ  G+  D  T   LL AC         +
Sbjct: 206 LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAGLV 194
            +H+ + K G   D     SL+D Y KCG   +  A  +F ++G+R ++V WN M+    
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCG--DIETAHDIF-NLGDRTNVVLWNLMLVAYG 322

Query: 195 KGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
           +  +L+++  +F +M       +  ++  IL      G++ L  E    +  +N      
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDM 381

Query: 251 MVWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            V G     YSK G ++ A+ + + +  + +V WT +I+GY +    +EA   + +M++ 
Sbjct: 382 YVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+ PD+  L S  +ACA    +  G+++HA +    +  + ++ N LV++YA+CG  + A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            S+F  +  KD ++WN ++ G       ++AL +F +M   G   + +TF+  + A  + 
Sbjct: 502 FSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANL 561

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
             I +G Q  +      G   + E    +I L G+ G +++A  +   M +  N + W T
Sbjct: 562 ADIKQGKQ-VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNT 619

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           ++ +C +H     A ++ D  ++ +G  P + T +  + A +
Sbjct: 620 IITSCSQHGRGLEALDLFD-QMKQEGLKPNDVTFIGVLAACS 660



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 129/499 (25%), Positives = 227/499 (45%), Gaps = 16/499 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF ++   D   +  ++    Q+ L  +AFR++  M    V    +    +L AC  
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTK 156

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   +MIHA +YK  +  + FV N+LI  Y   G     LA+++F  M   D V++N
Sbjct: 157 GKLFAQGRMIHAQVYKQAFCSETFVGNALIALY--LGFGSFKLAERVFCDMLFCDRVTFN 214

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+G  + G    A ++FDEM       D V+  ++L   A  G++    +L   +   
Sbjct: 215 TLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKA 274

Query: 244 NI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            +    ++  +++  Y K GD+E A  +F+      +V W +++  Y +     ++  ++
Sbjct: 275 GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIF 334

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM+  G+ P+  T   IL  C  +G + LG ++H+   K  F+ +  V   L+DMY+K 
Sbjct: 335 GQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G LD A  +   + K+D+VSW +M+ G   H   E+AL  F  M+D G  PD        
Sbjct: 395 GCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC     + +G+Q  ++     G    +  +  +++L  R GR +EA  L + +    +
Sbjct: 455 SACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIE-HKD 512

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
            I W  L+          L ++ L   +++ G     Y + + I A +   N     + +
Sbjct: 513 EITWNGLISG---FGQSRLYKQALMVFMKM-GQAGAKYNVFTFISAISALANLADIKQGK 568

Query: 540 MKKTRAQKPSGASSVEVDN 558
               RA K    S  EV N
Sbjct: 569 QVHGRAVKTGHTSETEVAN 587



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 207/420 (49%), Gaps = 22/420 (5%)

Query: 122 LKACNGK-NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           L+AC G+ N + LV  IHA     G   D  + N LID Y+K G+V    A+++F  +  
Sbjct: 49  LQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVW--QARQVFKELSS 106

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF------ 234
           RD VSW +M++G  + G   EA RL+ +M     +    +L     A      F      
Sbjct: 107 RDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMI 166

Query: 235 --ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
             +++++         + ++  Y   G  ++A+ +F  M     V +  +ISG+A+ G  
Sbjct: 167 HAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHG 226

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           + A +++D+M+ +GL+PD  T+ S+LAACA  G L  G ++H+ + K     +     +L
Sbjct: 227 ECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSL 286

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +D+Y KCG ++ A  +FN   + ++V WN ML          K+  +F +M+  G  P++
Sbjct: 287 LDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQ 346

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
           +T+  +L  CT  G I+ G Q  +S+    G    +   G +ID+  + G L +A ++++
Sbjct: 347 FTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILE 405

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELA----EEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            M  + + + W +++    +H+  E A    +E+ DC     G  P N  + S   A  G
Sbjct: 406 -MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC-----GVWPDNIGLASAASACAG 459


>gi|357478647|ref|XP_003609609.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510664|gb|AES91806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 576

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 196/577 (33%), Positives = 319/577 (55%), Gaps = 46/577 (7%)

Query: 16  LLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA------ 68
           ++  KL  L  KC  +   KQ+ AQII  +L    ++ P  I  + LC            
Sbjct: 1   MVATKLTTLMKKCSTVKHAKQIHAQIITNNLT---HLEPIFIHRILLCDITNYKTISNYI 57

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
           + + + +++PD   +  +IR   Q     +A  +++ M+  G+   +     +LK+C   
Sbjct: 58  LSILHHLRNPDSFSWGCVIRFFSQKGQFVEAVSLYVQMRRIGLCPSSHAVSSILKSCARV 117

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
                  +IH  ++K G+   ++V  +L+D Y K G   V  A+K+F  M ++++VSWNS
Sbjct: 118 EDDLCGLLIHGHVHKFGFDACVYVQTALLDLYCKIG--DVVTARKVFDEMPDKNVVSWNS 175

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
           +++G +KGG L E +R FDE+P +D +SWN ++ GYAKAG+M+ A  LF+++P RN  SW
Sbjct: 176 LLSGYIKGGNLDEGQRFFDEIPLKDVISWNCMVSGYAKAGKMDRACYLFQQMPERNFASW 235

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME----- 303
           +TM+ GY   G +  A+ LFD MP +  V    +I+GY++ G    A  L+DQM+     
Sbjct: 236 NTMITGYVDCGSIVEARELFDAMPRRNSVSLITMIAGYSKSGDVHSARELFDQMDDKDLL 295

Query: 304 ----------------------------EAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
                                       ++ L PD  TL S+++AC++ G L     + +
Sbjct: 296 SYNAMIACYAQSSKPKEALDLFNVMLKPDSSLHPDKMTLASVISACSQLGNLEHWRWIES 355

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            IN +    + ++  AL+D+YAKCGS+D A  +F+G+ K+D+V+++AM+YG  ++G+   
Sbjct: 356 QINNFGIVLDDHLATALIDLYAKCGSIDKAYELFHGLRKRDVVAYSAMIYGCGINGRASD 415

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A+ LF RM  E   P+  T+ G+L A  HAG  ++G + F SM +D GI+P V+HYG M+
Sbjct: 416 AVELFERMAGECIIPNLVTYTGILTAYNHAGLAEEGYRCFISM-KDNGIVPSVDHYGIMV 474

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLLGR+G L EA +L+  MP++PN  +WG LL ACR H+ ++L E  +   I+L+    G
Sbjct: 475 DLLGRAGWLDEAYKLIMKMPMQPNVGVWGALLLACRLHDNLKLGEIAVQHCIKLESETAG 534

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
            Y++LS I+A  G WN    +   ++  +  K  G S
Sbjct: 535 YYSLLSGIYATVGKWNDAKKLTTGVEGKKIIKIPGCS 571


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 319/567 (56%), Gaps = 10/567 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQL + +IK+ +  D  I   L+     C  +  A + F   +  +V L+N ++ A  Q 
Sbjct: 334 KQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQL 393

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
              ++++ +FL MQ +G+  + +TYP +L+ C       L + IH  + K G+  +++V 
Sbjct: 394 GNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVC 453

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           + LID Y+K G +    A+ +   + E D+VSW +MIAG  +    +EA +LF EM  + 
Sbjct: 454 SVLIDMYAKHGELDT--ARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQG 511

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW--------STMVWGYSKDGDMEMAK 265
             S N        A     A    ++I  ++ +S         + +V  Y++ G  + A 
Sbjct: 512 IRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAY 571

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           L F+++ AK  + W  +ISG+A+ G  +EA +++ QM +AG++ +  T  S ++A A + 
Sbjct: 572 LAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANTA 631

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            +  G ++HA + K  +   T   N L+ +Y+KCGS+++A   F  M +K++VSWNAM+ 
Sbjct: 632 NIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMIT 691

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G + HG G +A+ LF  MK  G  P+  TFVGVL AC+H G +++G+ YF SM +++G++
Sbjct: 692 GYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLV 751

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P+ EHY C++DLLGR+  L  A   ++ MP+EP+A+IW TLL AC  H  +E+ E     
Sbjct: 752 PKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARH 811

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L+ L+  D   Y +LSN++A +G W+     R  MK    +K  G S +EV N +H F V
Sbjct: 812 LLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFV 871

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D+LHP +EQIY+ I+ L +    +G+
Sbjct: 872 GDRLHPLAEQIYEYIDDLNERAGEIGY 898



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 246/494 (49%), Gaps = 19/494 (3%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   K+L A+I K     +  +  +LI       ++  AIK+F+DI   +V  +N +I 
Sbjct: 25  SLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVIS 84

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYF 147
             +   L +Q   +F  M  + V  D  T+  +L+AC+G K  F + + IHA I   G+ 
Sbjct: 85  GLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHHGFG 144

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               V N LID YSK G   V LAK +F  +  +D VSW +MI+GL + G   EA  LF 
Sbjct: 145 SSPLVCNPLIDLYSKNG--HVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFC 202

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW---------STMVWGYSKD 258
           +M +   +    +      A      F+L E++ H  IV W         + +V  YS+ 
Sbjct: 203 QMHKSAVIPTPYVFSSVLSACTKIELFKLGEQL-HGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G++  A+ +F +M  +  + +  +ISG A++G +  A +L+++M+   +KPD  T+ S+L
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA  G    G ++H+ + K     +  +  +L+D+Y KC  ++ A   F     +++V
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            WN ML      G   ++  +F +M+ EG  P++YT+  +L  CT  G +D G Q    +
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN---- 494
            +  G    V     +ID+  + G L  A  ++Q +  E + + W  ++    +H+    
Sbjct: 442 IKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQRLR-EEDVVSWTAMIAGYTQHDLFAE 499

Query: 495 AVELAEEVLDCLIR 508
           A++L +E+ +  IR
Sbjct: 500 ALKLFQEMENQGIR 513



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 211/445 (47%), Gaps = 44/445 (9%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+E+G+  +  TY +L + C         + +HA I+K G+ G+  + + LID Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
           V  ++  KLF  +   ++  WN +I+GL+     S+   LF  M   +     +      
Sbjct: 61  VDNAI--KLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVL 118

Query: 226 KA-----GEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           +A         +  ++  KI H    S     + ++  YSK+G +++AKL+F+R+  K  
Sbjct: 119 RACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDS 178

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W  +ISG ++ G   EA  L+ QM ++ + P      S+L+AC +  L  LG ++H  
Sbjct: 179 VSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGF 238

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I K+     T VCNALV +Y++ G+L  A  +F+ M ++D +S+N+++ GLA  G  ++A
Sbjct: 239 IVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ---YFYSM--------------- 438
           L LF +M+ +   PD  T   +L AC   G   KG Q   Y   M               
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDL 358

Query: 439 ---------ERDYGILPQVEH---YGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIW 483
                      +Y +  + E+   +  M+   G+ G L E+  +   M +E   PN   +
Sbjct: 359 YVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTY 418

Query: 484 GTLLGACRKHNAVELAEEVLDCLIR 508
            ++L  C    A++L E++   +I+
Sbjct: 419 PSILRTCTSLGALDLGEQIHTQVIK 443



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 182/374 (48%), Gaps = 18/374 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +Q+  Q+IK   Q + Y+   LI   A   ++  A  +   +++ DV  +  +I  
Sbjct: 431 LDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAG 490

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+ L A+A ++F +M+ +G+ +DN  +   + AC G    +  Q IHA  Y  GY  D
Sbjct: 491 YTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSED 550

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + + N+L+  Y++CG      A   F  +  +D +SWN++I+G  + G   EA ++F +M
Sbjct: 551 LSIGNALVSLYARCG--RAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQM 608

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV---------SWSTMVWGYSKDGD 260
            +   V  N    G A +   N A     K  H  ++         + + ++  YSK G 
Sbjct: 609 NQA-GVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGS 667

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E AK  F  MP K +V W  +I+GY++ G   EA  L+++M++ GL P+  T + +L+A
Sbjct: 668 IEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSA 727

Query: 321 CAESGLLGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKD 376
           C+  GL+  G+    S++K      K    VC  +VD+  +   L  A      M  + D
Sbjct: 728 CSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVC--VVDLLGRAALLCCAREFIEEMPIEPD 785

Query: 377 LVSWNAMLYGLAMH 390
            + W  +L    +H
Sbjct: 786 AMIWRTLLSACTVH 799


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 304/552 (55%), Gaps = 37/552 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDP 78
           L  L+ CKNL    Q+    IK  +  D Y   KLI   ++++   +  A ++     +P
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMI 137
           D  ++NTL+R   ++     +  VF++M  KG VF D+F++ F++KA            +
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H    K G    +FV  +LI  Y  CG V                               
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEF----------------------------- 151

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
               AR++FDEM + + V+WN ++    +  ++  A E+F+K+  RN  SW+ M+ GY K
Sbjct: 152 ----ARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIK 207

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G++E AK +F  MP +  V W+ +I G A  G   E+   + +++ AG+ P++ +L  +
Sbjct: 208 AGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGV 267

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD- 376
           L+AC++SG    G  +H  + K  +    +V NAL+DMY++CG++  A  VF GM +K  
Sbjct: 268 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 327

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSW +M+ GLAMHGQGE+A+ LF+ M   G  PD  +F+ +L AC+HAG I++G  YF 
Sbjct: 328 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFS 387

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M+R Y I P++EHYGCM+DL GRSG+L++A   +  MP+ P AI+W TLLGAC  H  +
Sbjct: 388 EMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNI 447

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ELAE+V   L  L  ++ G+  +LSN +A  G W  VA++R  M   R +K +  S VEV
Sbjct: 448 ELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEV 507

Query: 557 DNEVHEFSVCDQ 568
              +++F+  ++
Sbjct: 508 GKTMYKFTAGEK 519


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 209/571 (36%), Positives = 320/571 (56%), Gaps = 14/571 (2%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q +++   +IKL    D + A  L+   A    +  A  VF++I  PD+  +N +I  CV
Sbjct: 129 QGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCV 188

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
            +  + +A  +  +M + G+  + FT    LKAC G     L + +H+ + K     D F
Sbjct: 189 LHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSF 248

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           +   LID YSKC    +  A+ +F  M ERD+++WN++I+G  +  E  EA  LF  M  
Sbjct: 249 LGVGLIDMYSKCN--SMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHT 306

Query: 212 R----DAVSWNTILDGYAKAGEMNL------AFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
                +  + +T+L   A A + N       A  L       N V  ++++  Y K G +
Sbjct: 307 EGIGFNQTTLSTVLKSIA-ALQANYMCRQIHALSLKSGFEFDNYVV-NSLIDTYGKCGHV 364

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A  +F+  P   LV +T +++ YA+ G  +EA RLY +M++ G+KPD     S+L AC
Sbjct: 365 EDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC 424

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A       G +VH  I K+ F  +    N+LV+MYAKCGS+++A   F+ +  + +VSW+
Sbjct: 425 ASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWS 484

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ GLA HG G++AL LF +M   G  P+  T V VLCAC HAG + +   YF SM+  
Sbjct: 485 AMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKIL 544

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +GI P  EHY CMIDLLGR+G+L+ A+ LV  MP + NA++WG LLGA R H  ++L E+
Sbjct: 545 FGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQ 604

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             + L+ L+    G + +L+NI+A+ G W+KVA VR  MK  + +K  G S +EV ++V+
Sbjct: 605 AAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVY 664

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ H +S +IY  ++ L   LK  G+
Sbjct: 665 TFIVGDRSHSRSTEIYAKLDELSDLLKKAGY 695



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 244/506 (48%), Gaps = 13/506 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L   KQ+   ++      D ++A  L+   A C   G A  +F+ I D  V  +N L 
Sbjct: 24  KDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALF 83

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              V + ++ +A  +F DM   G+  + F+   ++  C G       + IH  + K GY 
Sbjct: 84  SCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYD 143

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D F  N+L+D Y+K G+  +  A  +F  + + DIVSWN++IAG V       A  L  
Sbjct: 144 SDAFSANALVDMYAKVGI--LEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLR 201

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDG 259
           EM +     +  + ++ L   A      L  +L   +   ++ S S +  G    YSK  
Sbjct: 202 EMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCN 261

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            M+ A+L+F  MP + ++ W  +ISG+++    +EAA L+  M   G+  +  TL ++L 
Sbjct: 262 SMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLK 321

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           + A      +  ++HA   K  F+ +  V N+L+D Y KCG +++A  VF      DLV 
Sbjct: 322 SIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVL 381

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           + +++   A  GQGE+AL L+  M+D G  PD +    +L AC      ++G Q    + 
Sbjct: 382 FTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL 441

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           + +G +  +     ++++  + G +++A      +PV    + W  ++G   +H   + A
Sbjct: 442 K-FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVR-GIVSWSAMIGGLAQHGYGKEA 499

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFA 525
            ++   ++++ G  P + T++S + A
Sbjct: 500 LQLFKQMLKV-GVPPNHITLVSVLCA 524



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 132/480 (27%), Positives = 223/480 (46%), Gaps = 71/480 (14%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M   G+  + F +P +LKAC       L + +H ++   G+  D FV NSL+  Y+KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCG- 59

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG-- 223
            G   A+ LF ++ +R +VSWN++ +  V      EA  LF +M          +L G  
Sbjct: 60  -GFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDM----------VLSGIR 108

Query: 224 ---YAKAGEMNLAFELFEKIPHRNI-------------VSWSTMVWGYSKDGDMEMAKLL 267
              ++ +  +N+   L + +  R I              S + +V  Y+K G +E A  +
Sbjct: 109 PNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSV 168

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD +    +V W  II+G         A  L  +M ++G+ P+  TL S L ACA   L 
Sbjct: 169 FDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALR 228

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++H+S+ K     ++ +   L+DMY+KC S+D+A  VF  M ++D+++WNA++ G 
Sbjct: 229 ELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGH 288

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL-----------CACTHAGFIDKGVQY-- 434
           + + + E+A  LF  M  EG G ++ T   VL           C   HA  +  G ++  
Sbjct: 289 SQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDN 348

Query: 435 --FYSMERDYGILPQVEH---------------YGCMIDLLGRSGRLKEALRL---VQSM 474
               S+   YG    VE                +  ++    + G+ +EALRL   +Q  
Sbjct: 349 YVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDR 408

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
            ++P++ +  +LL AC   +A E  ++V   +++        +  +S+IFA     N  A
Sbjct: 409 GIKPDSFVCSSLLNACASLSAYEQGKQVHVHILK--------FGFMSDIFAGNSLVNMYA 460


>gi|298205062|emb|CBI38358.3| unnamed protein product [Vitis vinifera]
          Length = 549

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 319/575 (55%), Gaps = 38/575 (6%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLAL--CRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           K L AQII   L  +     KLIS  A+     +  A ++F+ I  P+  +YN+LIR   
Sbjct: 5   KLLHAQIILHGLTNETLTLGKLISFCAVDDAGDLQYAQRMFDQIPQPNKFMYNSLIRGYS 64

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
            +     A  +F  M   G+  + FT PF+LKAC  K+ +    ++H L  K G    +F
Sbjct: 65  NSDDPIDAVLLFRRMICSGLSPNEFTLPFVLKACGCKSAYWEAVLVHGLAIKLGIGSLVF 124

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           V N+LI  Y  CG++                                   AR+LFD++ +
Sbjct: 125 VQNALIAVYVVCGLIHC---------------------------------ARKLFDDITD 151

Query: 212 R---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           +   D +  N ++D YAK G ++ A  +F++   +N+VSW++M+  Y++ G +E+A+ +F
Sbjct: 152 KTLIDIIVRNALVDMYAKCGNLHSAQAIFDRTQEKNVVSWTSMISAYAQHGSIEVARQIF 211

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D+MP K +V W  +IS Y  +G  +EA  L+++M  + + PD+ TL+SILAAC++ G L 
Sbjct: 212 DQMPGKNVVSWNSMISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACSQLGDLV 271

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           +G K+H  I   +      + N+L+DMYAKCG +  A+ +F  M  K+LVSWN ++  LA
Sbjct: 272 MGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDIFLEMPGKNLVSWNVIIGALA 331

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG G +A+ LF  M+ +G  PD+ T  G+L AC+H+G +D G+ YF  M   Y +  ++
Sbjct: 332 LHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLVDMGLYYFDRMGVIYRVPREI 391

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHY CM+DLLGR G L EA+ L+  MP++P+ ++WG LLGACR H  VE+ +++L  L+ 
Sbjct: 392 EHYACMVDLLGRGGLLGEAIELIGRMPMKPDVVVWGALLGACRIHGNVEIGKQILKQLLE 451

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L+    G Y ++SNI+     W  V  +R  M     +K    SS+E+D  ++EF V D+
Sbjct: 452 LEPHSGGLYVLISNIYWEAQRWEDVKKIRKLMIDRGIKKGRAISSIEIDGCIYEFMVDDK 511

Query: 569 LHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEG 603
            H  S  IY M++ L   L+  G+   +S+   E 
Sbjct: 512 RHKISSSIYAMLDQLTDHLRSAGYLCNISSVFFEA 546



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/317 (22%), Positives = 131/317 (41%), Gaps = 49/317 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC NL+  + +F +      +++      +IS+ A    + +A ++F+ +   +V  +N+
Sbjct: 169 KCGNLHSAQAIFDR----TQEKNVVSWTSMISAYAQHGSIEVARQIFDQMPGKNVVSWNS 224

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I   ++     +A  +F  M+   V  D  T   +L AC+                   
Sbjct: 225 MISCYLREGQYREALDLFNKMRNSRVVPDEATLVSILAACS------------------- 265

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
             GD+              V+G  +   +  + G   +  +NS+I    K G +  A  +
Sbjct: 266 QLGDL--------------VMGKKIHNYILSNKGAYGVTLYNSLIDMYAKCGPVVTALDI 311

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDM 261
           F EMP ++ VSWN I+   A  G    A +LFE++         ++ + ++   S  G +
Sbjct: 312 FLEMPGKNLVSWNVIIGALALHGCGLEAIKLFEEMQADGTLPDEITLTGLLSACSHSGLV 371

Query: 262 EMAKLLFDRMPAKTLVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           +M    FDRM     VP     +  ++      G+  EA  L  +M    +KPD     +
Sbjct: 372 DMGLYYFDRMGVIYRVPREIEHYACMVDLLGRGGLLGEAIELIGRMP---MKPDVVVWGA 428

Query: 317 ILAACAESGLLGLGMKV 333
           +L AC   G + +G ++
Sbjct: 429 LLGACRIHGNVEIGKQI 445


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 304/552 (55%), Gaps = 37/552 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDP 78
           L  L+ CKNL    Q+    IK  +  D Y   KLI   ++++   +  A ++     +P
Sbjct: 9   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 68

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMI 137
           D  ++NTL+R   ++     +  VF++M  KG VF D+F++ F++KA            +
Sbjct: 69  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 128

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H    K G    +FV  +LI  Y  CG V                               
Sbjct: 129 HCQALKHGLESHLFVGTTLIGMYGGCGCVEF----------------------------- 159

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
               AR++FDEM + + V+WN ++    +  ++  A E+F+K+  RN  SW+ M+ GY K
Sbjct: 160 ----ARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIK 215

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G++E AK +F  MP +  V W+ +I G A  G   E+   + +++ AG+ P++ +L  +
Sbjct: 216 AGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSLTGV 275

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD- 376
           L+AC++SG    G  +H  + K  +    +V NAL+DMY++CG++  A  VF GM +K  
Sbjct: 276 LSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRC 335

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSW +M+ GLAMHGQGE+A+ LF+ M   G  PD  +F+ +L AC+HAG I++G  YF 
Sbjct: 336 IVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFS 395

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M+R Y I P++EHYGCM+DL GRSG+L++A   +  MP+ P AI+W TLLGAC  H  +
Sbjct: 396 EMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNI 455

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ELAE+V   L  L  ++ G+  +LSN +A  G W  VA++R  M   R +K +  S VEV
Sbjct: 456 ELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEV 515

Query: 557 DNEVHEFSVCDQ 568
              +++F+  ++
Sbjct: 516 GKTMYKFTAGEK 527


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 195/554 (35%), Positives = 315/554 (56%), Gaps = 20/554 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDP 78
           L  L KCK + + K+L   +I   + +D     +L+   A      L  A  VFN I  P
Sbjct: 9   LSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRP 68

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            ++++N++I+    +    +A  ++ +M++KG   D+FT+PF+LKAC+  N ++L Q +H
Sbjct: 69  SLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVH 128

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             I K G+  D++   +L+  Y+ CG +  +L  K+F  + + ++V+W S+IAG +    
Sbjct: 129 NCIVKTGFEVDVYAATALLQMYAACGDMEAAL--KVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 199 LSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMN-----------LAFELFEKIPHR 243
            SEA R++ +M       + ++   +L   A++ ++N           +  + F+   + 
Sbjct: 187 PSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNF 246

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           N++  + +V  Y+K G ++ A+ LF++MP + LV W  +I  Y + G A EA  L+  M 
Sbjct: 247 NVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMR 306

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
            AG  PD  T + ++ ACA  G L  G  +HA ++K     +T +  ALVDMYAK G  +
Sbjct: 307 IAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAE 366

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCAC 422
            A  VF+ + KKD+ +W +++ GLAMHG GE+AL  F +M+ D    PD+ T++GVL AC
Sbjct: 367 RAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSAC 426

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H G ++ G  +F SM+  +GI P  +HYGCM+DLL R+GRL EA RLV+ MPVEPN  I
Sbjct: 427 SHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTAI 486

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           W  LL  C+ +  +++A+ V   +  L+    G Y +LSNI+A    W +V   R  MK+
Sbjct: 487 WSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMKE 546

Query: 543 TRAQKPSGASSVEV 556
            + QK  G SSVE+
Sbjct: 547 RKIQKSLGHSSVEM 560


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/543 (35%), Positives = 322/543 (59%), Gaps = 12/543 (2%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV-FTDNFTYPFLLK 123
           +G A  VF   ++ DV  +N+++RA V +++  +A + + +M E+     D FT+P LLK
Sbjct: 28  VGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLK 87

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
            C     F + +++H  + K     D+++  +L++ Y+ CG   +  A+ LF  MG R+ 
Sbjct: 88  GCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACG--DLKSARFLFERMGHRNK 145

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK 239
           V W SMI+G +K    +EA  L+ +M E     D V+  T++   A+  ++ +  +L   
Sbjct: 146 VVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSH 205

Query: 240 IPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           I   ++    V  S +V  Y+K GD++ A+ +FD++  K +  W+ +I GY +   + EA
Sbjct: 206 IREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEA 265

Query: 296 ARLYDQMEE-AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
            +L+ ++   + ++P++ T++++++ACA+ G L  G  VH  I + +   + ++ N+L+D
Sbjct: 266 LQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLID 325

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           M++KCG +D A  +F+ M+ KDL+SWN+M+ G A+HG G +AL  F  M+     PD+ T
Sbjct: 326 MFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEIT 385

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F+GVL AC+HAG + +G + FY +E  YG+  + EHYGCM+DLL R+G L EA   ++ M
Sbjct: 386 FIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVM 445

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P++P+  IWG++LGACR +N +EL EE    L++L+ ++ G Y +LSNI+A    WN+V 
Sbjct: 446 PLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKMWNEVK 505

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
            VR  M +   QK  G SSV +DN  H F   D  HP+  +I  M+  + + LK  G+ A
Sbjct: 506 KVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKLAGYVA 565

Query: 595 KLS 597
             S
Sbjct: 566 DTS 568



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 184/355 (51%), Gaps = 22/355 (6%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           N LI      G +GV  A  +F    E D+++WNSM+   V       A + + EM ER 
Sbjct: 14  NKLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERS 73

Query: 213 ----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
               D  ++ ++L G A     K G++ L  ++ + + H ++   +T++  Y+  GD++ 
Sbjct: 74  RNVPDRFTFPSLLKGCALLLEFKVGKV-LHGQVVKYMLHSDLYIETTLLNMYAACGDLKS 132

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LF+RM  +  V WT +ISGY +     EA  LY +MEE G  PD+ T+ ++++ACAE
Sbjct: 133 ARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAE 192

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              LG+GMK+H+ I +   K    + +ALV+MYAKCG L  A  VF+ ++ KD+ +W+A+
Sbjct: 193 LKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSAL 252

Query: 384 LYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++G   + +  +AL LF  +       P++ T + V+ AC   G ++ G         DY
Sbjct: 253 IFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETG-----RWVHDY 307

Query: 443 GILPQVEHY----GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
               Q  H       +ID+  + G +  A R+  SM  + + I W +++     H
Sbjct: 308 ITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISWNSMVNGFALH 361



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 177/367 (48%), Gaps = 23/367 (6%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K L  Q++K  L  D YI   L++  A C  +  A  +F  +   +  ++ ++I   ++N
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK-----CGYFG 148
               +A  ++  M+E G   D  T   L+ AC       +   +H+ I +     C   G
Sbjct: 159 HCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLG 218

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                ++L++ Y+KCG   +  A+++F  + ++D+ +W+++I G VK    +EA +LF E
Sbjct: 219 -----SALVNMYAKCG--DLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFRE 271

Query: 209 MP-----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDG 259
           +        + V+   ++   A+ G++     + + I       ++   ++++  +SK G
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG 331

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D++ AK +FD M  K L+ W  +++G+A  G+ +EA   +  M+   L+PD+ T I +L 
Sbjct: 332 DIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLT 391

Query: 320 ACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDL 377
           AC+ +GL+  G K+   I   Y  +  +     +VD+  + G L  A      M  + D 
Sbjct: 392 ACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDG 451

Query: 378 VSWNAML 384
             W +ML
Sbjct: 452 AIWGSML 458



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 78/347 (22%), Positives = 148/347 (42%), Gaps = 49/347 (14%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L    +L + I ++D++    +   L++  A C  +  A +VF+ + D DV+ ++ LI
Sbjct: 194 KDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALI 253

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
              V+N+ + +A ++F ++        N  T   ++ AC         + +H  I +   
Sbjct: 254 FGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQK 313

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV------------ 194
              + + NSLID +SKCG   +  AK++F SM  +D++SWNSM+ G              
Sbjct: 314 GHSVSLNNSLIDMFSKCG--DIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQF 371

Query: 195 -----------------------KGGELSEARRLFDEMPERDAVS-----WNTILDGYAK 226
                                    G + E ++LF E+     V      +  ++D   +
Sbjct: 372 RLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCR 431

Query: 227 AGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEM----AKLLFDRMPAKTLVPWTI 281
           AG +  A E    +P   +   W +M+       ++E+    A+ L    P    V + +
Sbjct: 432 AGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGV-YIL 490

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           + + YA++ M  E  ++ + M E G++   G    ++   A S L G
Sbjct: 491 LSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAG 537


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 298/524 (56%), Gaps = 46/524 (8%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D+ T+PFLLKAC    +      +   + K G+  D+FV N+ +  +S  G   + LA++
Sbjct: 120 DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSG--SMVLARR 177

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLF------------DEMPERDAVS----- 216
           LF     RD+VSWN++I G V+ G   EA  LF            DE+    AVS     
Sbjct: 178 LFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQM 237

Query: 217 ------------------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
                                    N ++D Y K G + LA  +FE+I ++ +VSW+TM+
Sbjct: 238 GDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTTMI 297

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            G+++ G ME A++LFD MP + + PW  +++GY +    KEA  L+ +M+E+ + P++ 
Sbjct: 298 VGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEI 357

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T++++L+AC++ G L +GM VH  I++++   +  +  +LVDMYAKCG++  A+ +F  +
Sbjct: 358 TMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEI 417

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K+ ++W AM+ GLA HG  ++A+  F RM D G  PD+ TF+GVL AC HAG + +G 
Sbjct: 418 PDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGR 477

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           Q+F  M   Y +  +++HY CMIDLLGR+G L EA +LV +MP++P+A++WG L  ACR 
Sbjct: 478 QFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRM 537

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  + L E+    L+ L  SD G Y +L+N++A      K   VR+ M+    +K  G S
Sbjct: 538 HGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCS 597

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            +E++  VHEF V D+ H  +  IY  ++ +   +K   H A L
Sbjct: 598 CIELNGVVHEFIVKDKSHLDTIAIYDCLHGITLQMK---HTANL 638



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 190/407 (46%), Gaps = 48/407 (11%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           +   + KL    D ++    +   ++   M LA ++F++    DV  +NTLI   V++ L
Sbjct: 143 VLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGL 202

Query: 96  NAQAFRVFLDMQEKG--VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
             +A  +F  + E G  V  D  T    +  C       L + +H  +   G    + + 
Sbjct: 203 PREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLM 262

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+++D Y KCG   + LAK +F  +  + +VSW +MI G  + G + +AR LFDEMPERD
Sbjct: 263 NAVMDMYVKCG--SLELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERD 320

Query: 214 AVSWNTILDGYAKAGEMNLAFELFE----------KIPHRNIVS------------W--- 248
              WN ++ GY +  +   A  LF           +I   N++S            W   
Sbjct: 321 VFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHH 380

Query: 249 --------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
                         +++V  Y+K G+++ A  +F  +P K  + WT +I G A  G A E
Sbjct: 381 YIDRHQLYLSVALGTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADE 440

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALV 353
           A   + +M + GL+PD+ T I +L+AC  +GL+  G +  + ++ KY  +      + ++
Sbjct: 441 AIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMI 500

Query: 354 DMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ---GEKA 396
           D+  + G LD A  + N M    D V W A+ +   MHG    GEKA
Sbjct: 501 DLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFFACRMHGNITLGEKA 547



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 15/267 (5%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           RL+   +    KC +L   K +F +I      +       +I   A    M  A  +F++
Sbjct: 260 RLMNAVMDMYVKCGSLELAKSVFERID----NKTVVSWTTMIVGHARLGMMEDARMLFDE 315

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + + DV  +N L+   VQN    +A  +F +MQE  V  +  T   LL AC+      + 
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMG 375

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             +H  I +   +  + +  SL+D Y+KCG   +  A  +F  + +++ ++W +MI GL 
Sbjct: 376 MWVHHYIDRHQLYLSVALGTSLVDMYAKCG--NIKKAICIFKEIPDKNALTWTAMICGLA 433

Query: 195 KGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAG---EMNLAFELFEKIPH--RNI 245
             G   EA    +R+ D   + D +++  +L     AG   E    F L  +  H  R +
Sbjct: 434 NHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKM 493

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             +S M+    + G ++ A+ L + MP
Sbjct: 494 KHYSCMIDLLGRAGHLDEAEQLVNTMP 520



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 4/199 (2%)

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PD  T   +L ACA       G  V   + K  F  +  V NA V  ++  GS+  A  
Sbjct: 118 RPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARR 177

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKYTFVGVLCACTHA 425
           +F+    +D+VSWN ++ G    G   +AL LF R+ ++G    PD+ T +G +  C   
Sbjct: 178 LFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQM 237

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G ++ G +  +      G+   V     ++D+  + G L+ A  + + +      + W T
Sbjct: 238 GDLELG-KRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVFERID-NKTVVSWTT 295

Query: 486 LLGACRKHNAVELAEEVLD 504
           ++    +   +E A  + D
Sbjct: 296 MIVGHARLGMMEDARMLFD 314


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 206/584 (35%), Positives = 325/584 (55%), Gaps = 13/584 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C+ L   +++   + KL  Q D ++A  LI   +    +G+A  +F+D+   D+  +
Sbjct: 182 LKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSW 241

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I   +QN   AQA  V  +M+ +G+  D+ T   +L  C          +IH  + K
Sbjct: 242 NAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIK 301

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   ++FV N+LI+ Y+K G +G   A+K+F  M  RD+VSWNS+IA   +  +   AR
Sbjct: 302 HGLEFELFVSNALINMYAKFGNLGD--AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTAR 359

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWG 254
             F +M     E D ++  ++    A++ +   +  +   I  R      +V  + ++  
Sbjct: 360 GFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDM 419

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA-GLKPDDGT 313
           Y+K G ++ A  +F+ +P K +V W  +ISGY + G+A EA  +Y  MEE   +K + GT
Sbjct: 420 YAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGT 479

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +SILAA A  G L  GM++H  + K     +  V   L+D+Y KCG L +AM +F  + 
Sbjct: 480 WVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP 539

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           ++  V WNA++    +HG GEKAL LF  M+DEG  PD  TF+ +L AC+H+G +D+G +
Sbjct: 540 RESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEG-K 598

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           +F+ + ++YGI P ++HYGCM+DLLGR+G L+ A   ++ MP+ P+A IWG LLGACR H
Sbjct: 599 WFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIH 658

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +EL +   D L  +   + G Y +LSNI+A  G W  V  VR   ++   +K  G SS
Sbjct: 659 GNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSS 718

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +EV+  V  F   +Q HPK ++IY  +  L   +K +G+    S
Sbjct: 719 IEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYS 762



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 156/533 (29%), Positives = 267/533 (50%), Gaps = 61/533 (11%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C      K+L A ++     +  +I+ +L++  A    + L+   F+ IQ  DV+ +N++
Sbjct: 86  CTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSM 145

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVF-TDNFTYPFLLKACNGKNWFHLV--QMIHALIYK 143
           I A V+N    +A   F  +     F  D +T+P +LKAC       LV  + IH  ++K
Sbjct: 146 ISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT-----LVDGRKIHCWVFK 200

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  D+FV  SLI  YS+ G VG+  A+ LF  M  RD+ SWN+MI+GL++ G  ++A 
Sbjct: 201 LGFQWDVFVAASLIHMYSRFGFVGI--ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQAL 258

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMN-------------LAFELFEKIPHRNIV 246
            + DEM       D+V+  +IL   A+ G+++             L FELF         
Sbjct: 259 DVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVS------- 311

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
             + ++  Y+K G++  A+ +F +M  + +V W  II+ Y +      A   + +M+  G
Sbjct: 312 --NALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNG 369

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC-NALVDMYAKCGSLDNA 365
           L+PD  TL+S+ +  A+S        VH  I +  +     V  NA++DMYAK G +D+A
Sbjct: 370 LEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSA 429

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTH 424
             VFN +  KD+VSWN ++ G   +G   +A+ ++  M++      ++ T+V +L A  H
Sbjct: 430 HKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAH 489

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHY------GCMIDLLGRSGRLKEALRLVQSMPVEP 478
            G + +G+       R +G L +   +       C+IDL G+ GRL +A+ L   +P E 
Sbjct: 490 VGALQQGM-------RIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE- 541

Query: 479 NAIIWGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +++ W  ++     H     A++L  E+ D     +G  P + T +S + A +
Sbjct: 542 SSVPWNAIISCHGIHGHGEKALKLFREMQD-----EGVKPDHVTFISLLSACS 589



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 9/194 (4%)

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR-MKDEGFGP 410
           LV++YA  G +  +   F+ + +KD+ +WN+M+     +G   +A+  F + +    F  
Sbjct: 114 LVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQA 173

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D YTF  VL AC     +D    + +  +   G    V     +I +  R G +  A  L
Sbjct: 174 DFYTFPPVLKACQ--TLVDGRKIHCWVFK--LGFQWDVFVAASLIHMYSRFGFVGIARSL 229

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS--NIFAATG 528
              MP       W  ++    ++     A +VLD + RL+G +  + T+ S   + A  G
Sbjct: 230 FDDMPFRDMG-SWNAMISGLIQNGNAAQALDVLDEM-RLEGINMDSVTVASILPVCAQLG 287

Query: 529 DWNKVANVRLQMKK 542
           D +    + L + K
Sbjct: 288 DISTATLIHLYVIK 301


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 201/569 (35%), Positives = 317/569 (55%), Gaps = 52/569 (9%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           CK +   KQL AQ+IK    RDP  A +L+  S+++  R +  A K+F  +  P+   YN
Sbjct: 21  CKTMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYN 80

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYK 143
           TLIRA  +++    A  VF++M E      N FT+P + KAC         + +H L  K
Sbjct: 81  TLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVK 140

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D FV ++++  Y  C                                 G + +A 
Sbjct: 141 FGLDSDEFVVSNVVRMYLSC---------------------------------GVMEDAH 167

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           RLF              +DG     +     +        ++V W+ M+ GY + G++E+
Sbjct: 168 RLFYR---------RVFVDGCDGIRDKKRRVD-------GDVVLWNVMIDGYVRIGELEV 211

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LFD MP +++V W ++I+GYA+ G  KEA  ++ +M+ A + P+  TL+S+L A + 
Sbjct: 212 ARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSR 271

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L LG  VH    +     +  + +AL+DMYAKCGS++ A+ VF G+ K+++V+W+ +
Sbjct: 272 LGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTI 331

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLAMHG+ +  L  F  M+  G  P   T++G+L AC+HAG +++G  +F  M R  G
Sbjct: 332 IAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSG 391

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           + P++EHYGCM+DLLGR+G L+E+  L+ +MP++P+ +IW  LLGAC+ H  VE+ + V 
Sbjct: 392 LEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVA 451

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L+ L   D G+Y  LSNI+A+ G+W  VA VRL MK+   +K  G S +E+D  +HEF
Sbjct: 452 EHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEF 511

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            V D  HPKS++I+ M+  + ++L  VG+
Sbjct: 512 LVEDDSHPKSKKIHSMLQEMSRNLILVGY 540


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 208/569 (36%), Positives = 309/569 (54%), Gaps = 60/569 (10%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           IR P   SK       LQ L   K + QT+ L   I K  L   P++  K+IS L+L   
Sbjct: 110 IRVPDLLSK-------LQQLSSVKEVEQTQCL---ITKSGLFNHPFVISKIISFLSLSPL 159

Query: 65  MGL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
             L  A  +F D    +  + NT+IRA  ++    +A  ++  M  K + +D+FTYPF L
Sbjct: 160 GSLVYAQAIFEDTAMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGL 219

Query: 123 KACNGKNW-----FHLVQM--------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           KAC    W         Q+        IH  +++ G   D F+ NSL+  YS+CG + + 
Sbjct: 220 KACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDL- 278

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
                                           AR +FDEM E+   SWN ++  Y +  +
Sbjct: 279 --------------------------------ARCVFDEMTEKTITSWNVMISAYDQIND 306

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A  L   +P +N+VSW+ ++  Y + G +E AK++F  MP +  V W  +I+GY + 
Sbjct: 307 FDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQI 366

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
                A  L+ +ME A ++  D TLIS+L ACAE+G L +G K+H S+ +  +K    + 
Sbjct: 367 KDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLS 426

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK--DEG 407
           NALVDMYAKCG L+ A  VF+ +  K +  WNAM+  LA+HG  E+AL LFS M+   +G
Sbjct: 427 NALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDG 486

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             P++ TF+GVL AC+H G +D+G  +F  M  +Y I+P ++HYGCM+DLL R G LKEA
Sbjct: 487 ARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEA 546

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             ++++MP E N+++W TLLGACR H+ V+LAEE    L +++    G+Y +LSNI+A  
Sbjct: 547 HHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEA 606

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEV 556
             WN V  VR +M  +   K  G+S + +
Sbjct: 607 QRWNDVERVRSEMIGSGVPKKPGSSHIGI 635


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  360 bits (923), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/636 (31%), Positives = 342/636 (53%), Gaps = 53/636 (8%)

Query: 9   TWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           T F +   ++ +L +++ KC  L+  +++F ++     +R+ +    +IS+L     +  
Sbjct: 53  TPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMS----ERNVFSFNSIISTLMRWGFVDE 108

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           +  +F+ + + D   +N++I    Q+    +A   F+ M       +++++   L AC+ 
Sbjct: 109 SAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSR 168

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   IH LI K  Y  D+F+ + LID YSKCG+VG   A+++F  M E+++VSWN
Sbjct: 169 LKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGC--ARRVFDGMEEKNVVSWN 226

Query: 188 SMIAGLVKGGELSEARRLFDEMPE------------------------------------ 211
            +I    + G   EA   F  M E                                    
Sbjct: 227 CLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHARVVKS 286

Query: 212 ----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                D +  N ++D YAK G +N A  +F+++P RN VS +TMV GY+K   ++ A+ +
Sbjct: 287 DKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSM 346

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  +  K +V W  +I+GY + G  +EA  L+  ++   + P   T  ++L A A    L
Sbjct: 347 FATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADL 406

Query: 328 GLGMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            LG + H+ + K+ F+  +       V N+L+DMY KCGS++  + VF  M +KD VSWN
Sbjct: 407 ELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWN 466

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+ G A +G G +AL LF +M + G  PD  T +G LCAC+HAG +++G +YF+SM ++
Sbjct: 467 TMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKE 526

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +G+LP  +HY CM+DLLGR+G L+EA  L++SMP +P+A++W +LL AC+ H  + L + 
Sbjct: 527 HGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKY 586

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           V + +  +  +  G Y +L+N+++  G W    +VR  M++    K  G S +++ + VH
Sbjct: 587 VAEKIFEIDPTSSGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNVH 646

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            F V D+ HP+ ++IY ++  L K ++  G+    S
Sbjct: 647 VFMVKDKRHPQKKEIYSILKLLTKHMRQAGYVPDAS 682



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 237/497 (47%), Gaps = 90/497 (18%)

Query: 112 FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171
           FTD+  +  LL  C         + +H  + +  +  ++F+ N LID Y KCG +    A
Sbjct: 21  FTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYL--DYA 78

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
           +K+F  M ER++ S+NS+I+ L++ G + E+  LF  MPE+D  SWN+++ G+A+     
Sbjct: 79  RKVFDRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFE 138

Query: 232 LAFELFEKIPHR----------------------------------------NIVSWSTM 251
            A + F ++ HR                                        ++   S +
Sbjct: 139 EALDWFVRM-HRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGL 197

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  YSK G +  A+ +FD M  K +V W  +I+ Y + G A EA   + +M E G KPD+
Sbjct: 198 IDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDE 257

Query: 312 GTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            TL S+++ACA       G+++HA + K  +F+ +  + NALVDMYAKCG ++ A  VF+
Sbjct: 258 VTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFD 317

Query: 371 GM-------------------------------TKKDLVSWNAMLYGLAMHGQGEKALGL 399
            M                                +KD+VSWNA++ G   +G+ E+ALGL
Sbjct: 318 RMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGL 377

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-----YSMERDYGILPQVEHYGCM 454
           F  +K E   P  YTF  +L A  +   ++ G Q       +      G  P +     +
Sbjct: 378 FRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSL 437

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIRLK 510
           ID+  + G ++E LR+ ++M VE + + W T++    ++     A+EL +++L+      
Sbjct: 438 IDMYMKCGSVEEGLRVFENM-VEKDHVSWNTMIIGYAQNGYGMEALELFQKMLE-----S 491

Query: 511 GSDPGNYTMLSNIFAAT 527
           G  P + TM+  + A +
Sbjct: 492 GEKPDHVTMIGTLCACS 508


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 198/610 (32%), Positives = 326/610 (53%), Gaps = 43/610 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++ + ++L   +++  L  D  +   L+   + C  +  A +VF  + + +   YN L+ 
Sbjct: 392 DIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLA 451

Query: 89  ACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             VQ     +A  ++ DMQ E G+  D FT+  LL  C  +   +  + IHA + +    
Sbjct: 452 GYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANIT 511

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +I V   L+  YS+CG   ++ AK++F  M ER+  SWNSMI G  + GE  EA RLF 
Sbjct: 512 KNIIVETELVHMYSECG--RLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK 569

Query: 208 EMP---------------------------------------ERDAVSWNTILDGYAKAG 228
           +M                                        E + +    ++D YAK G
Sbjct: 570 QMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCG 629

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
            M+ A++++++   ++++  + MV  +   G    AK LFD+M  +    W  I++GYA 
Sbjct: 630 SMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYAN 689

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF-KCNTN 347
           KG+ KE+   + +M E+ ++ D  T+++I+  C+    L  G ++H+ I K  F  C+  
Sbjct: 690 KGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVV 749

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           +  ALVDMY+KCG++  A +VF+ M  K++VSWNAM+ G + HG  ++AL L+  M  +G
Sbjct: 750 LETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKG 809

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             P++ TF+ +L AC+H G +++G++ F SM+ DY I  + EHY CM+DLLGR+GRL++A
Sbjct: 810 MYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDA 869

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
              V+ MP+EP    WG LLGACR H  +++       L  L   +PG Y ++SNI+AA 
Sbjct: 870 KEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAA 929

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           G W +V ++R  MK    +K  G S +E+++E+  F    + HPK+E+IY  +  L    
Sbjct: 930 GRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQS 989

Query: 588 KPVGHAAKLS 597
           K +G+    S
Sbjct: 990 KGLGYIPDTS 999



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 202/405 (49%), Gaps = 44/405 (10%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N NQ +Q+ A +I+ ++ ++  +  +L+   + C ++  A ++FN + + + + +N++I
Sbjct: 493 RNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMI 552

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               QN    +A R+F  MQ  G+  D F+   +L +C   +     + +H  I +    
Sbjct: 553 EGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTME 612

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +  +   L+D Y+KCG   +  A K++    ++D++  N M++  V  G  ++A+ LFD
Sbjct: 613 EEGILQVVLVDMYAKCG--SMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFD 670

Query: 208 EMPERDAVSWNTILDGYAKAG-------------EMNLAFELFEKIPHRNIVSW------ 248
           +M +R+   WN+IL GYA  G             E ++ +++   +   N+ S       
Sbjct: 671 QMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEH 730

Query: 249 ---------------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
                                + +V  YSK G +  A+ +FD M  K +V W  +ISGY+
Sbjct: 731 GDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYS 790

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNT 346
           + G +KEA  LY++M + G+ P++ T ++IL+AC+ +GL+  G+++  S+ + Y  +   
Sbjct: 791 KHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKA 850

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
                +VD+  + G L++A      M  + ++ +W A+L    +H
Sbjct: 851 EHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVH 895



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 133/521 (25%), Positives = 246/521 (47%), Gaps = 33/521 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA---LCRQMGLAIKVFNDIQD 77
           +Q+     +  + K +  Q+I      D Y+  K++   A       +  A K+F ++ +
Sbjct: 78  IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPE 137

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
            ++  +NT+I A  +     +  R++  M+  G F+D FT+P ++KAC        V+ +
Sbjct: 138 RNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQL 197

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
            + + K G   ++FV  +L+D Y++ G +  ++       +    +V+WN++IAG VK  
Sbjct: 198 QSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTS--LDEIEGTSVVTWNAVIAGYVKIL 255

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE----KIPHRNIVSW----- 248
              EA  +FD M     +      D +  A  + +   L      K  H  +++      
Sbjct: 256 SWEEAWGIFDRM-----LKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 310

Query: 249 ----STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
               + ++  Y+K  D E    +FD M  +  V W  IIS  A+ G   +A  L+ +M+E
Sbjct: 311 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 370

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
           +G K +   L SIL A A    +G G ++H  + +     +  + +ALVDMY+KCG ++ 
Sbjct: 371 SGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEE 430

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACT 423
           A  VF  + +++ VS+NA+L G    G+ E+AL L+  M+ E G  PD++TF  +L  C 
Sbjct: 431 AHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490

Query: 424 HAGFIDKGVQYFYSMER---DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           +    ++G Q    + R      I+ + E    ++ +    GRL  A  +   M  E NA
Sbjct: 491 NQRNDNQGRQIHAHLIRANITKNIIVETE----LVHMYSECGRLNYAKEIFNRM-AERNA 545

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
             W +++   +++   + A  +    ++L G  P  +++ S
Sbjct: 546 YSWNSMIEGYQQNGETQEALRLFK-QMQLNGIKPDCFSLSS 585



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/472 (25%), Positives = 220/472 (46%), Gaps = 15/472 (3%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFM 176
           Y  L++ C   N F   + IH  +   GY  D ++   ++  Y++ G +  +  A+KLF 
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNL 232
            M ER++ +WN+MI    +  +  E  RL+  M       D  ++ +++       +M  
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 233 AFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
             +L   +       N+     +V GY++ G M+ A    D +   ++V W  +I+GY +
Sbjct: 194 VRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVK 253

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
               +EA  ++D+M + G+ PD+ T  S L  C        G +VH+ +    FK +T V
Sbjct: 254 ILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFV 313

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            NAL+DMYAKC   ++ + VF+ M +++ V+WN+++   A  G    AL LF RM++ G+
Sbjct: 314 GNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGY 373

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
             +++    +L A      I KG +    + R+  +   +     ++D+  + G ++EA 
Sbjct: 374 KSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSKCGMVEEAH 432

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           ++ +S+ +E N + +  LL    +    E A E+   +    G  P  +T  + +     
Sbjct: 433 QVFRSL-LERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCAN 491

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNE-VHEFSVCDQLHPKSEQIYQM 579
             N     ++     RA       ++ V+ E VH +S C +L+   E   +M
Sbjct: 492 QRNDNQGRQIHAHLIRANI---TKNIIVETELVHMYSECGRLNYAKEIFNRM 540



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 159/391 (40%), Gaps = 85/391 (21%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C +L+ +   ++L   I++  ++ +  +   L+   A C  M  A KV++     DV
Sbjct: 587 LSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDV 646

Query: 81  HLYNTLIRACVQN-------------------------------SLNAQAFRVFLDMQEK 109
            L N ++ A V +                                L  ++F  FL+M E 
Sbjct: 647 ILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLES 706

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGV 168
            +  D  T   ++  C+          +H+LI K G+    + +  +L+D YSKCG   +
Sbjct: 707 DIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCG--AI 764

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------------------ 210
           + A+ +F +M  ++IVSWN+MI+G  K G   EA  L++EMP                  
Sbjct: 765 TKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSAC 824

Query: 211 ----------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIP-HRNIVS 247
                                 E  A  +  ++D   +AG +  A E  EK+P    + +
Sbjct: 825 SHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVST 884

Query: 248 WSTMVWGYSKDGDMEMAKL----LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           W  ++       DM+M +L    LF+  P +   P+ I+ + YA  G  KE   +   M+
Sbjct: 885 WGALLGACRVHKDMDMGRLAAQRLFELDP-QNPGPYVIMSNIYAAAGRWKEVEDIRQMMK 943

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVH 334
             G+K D G  +S +   +E  +   G K H
Sbjct: 944 MKGVKKDPG--VSWIEINSEIQIFHAGSKTH 972


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/449 (40%), Positives = 263/449 (58%), Gaps = 20/449 (4%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D F  N ++  Y + G      A+  F  M  +D  SWN+MI G  + GE+ +AR LF  
Sbjct: 123 DTFSYNIMLSCYVRNG--NFEKAQSFFNRMPFKDAASWNTMITGYARRGEMEKARVLFYS 180

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           M E++ VSWN ++ GY + G++  A   F+  P R +V+W+ M+ GY K   +E+A+ +F
Sbjct: 181 MMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMF 240

Query: 269 DRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
             M  K  LV W  +ISGY E    ++  +L+  M E G++P+   L S L  C+E   L
Sbjct: 241 KDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSAL 300

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++H  +                 MY KCG L +A  +F  M KKD+V+WNAM+ G 
Sbjct: 301 CLGRQIHQIV-----------------MYCKCGELGDAWKLFEAMKKKDVVAWNAMISGY 343

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A HG  EKAL LF  M+D    PD  TFV VL AC HAG +D G+ YF SM RDY + P+
Sbjct: 344 AQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPR 403

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            +HY CM+DLLGR+G+++EAL+L++SMP  P+A ++GTLLGACR H  VELAE   + L+
Sbjct: 404 PDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLL 463

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L   +   Y  L+NI+A+   W  VA VR +MK++   K  G S +E+ N++H F   D
Sbjct: 464 ELDPRNAAGYVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEIRNKIHHFRSSD 523

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           ++HP+ + I++ +  L + +K  G+  +L
Sbjct: 524 RIHPELDSIHKKLKELERKMKLAGYKPEL 552



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 160/364 (43%), Gaps = 96/364 (26%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           +M  A ++F++I +PD   YN ++   V+N    +A   F  M            PF   
Sbjct: 108 RMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRM------------PFK-- 153

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             +  +W                       N++I  Y++ G   +  A+ LF SM E++ 
Sbjct: 154 --DAASW-----------------------NTMITGYARRG--EMEKARVLFYSMMEKNE 186

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-H 242
           VSWN+MI+G ++ G+L +A   F   P R  V+W  ++ GY KA ++ LA  +F+ +   
Sbjct: 187 VSWNAMISGYIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVK 246

Query: 243 RNIVSWSTMVWGYSKD-------------------------------------------- 258
           +N+V+W+ M+ GY ++                                            
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQI 306

Query: 259 ---------GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
                    G++  A  LF+ M  K +V W  +ISGYA+ G A++A  L+ +M ++  KP
Sbjct: 307 HQIVMYCKCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKP 366

Query: 310 DDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           D  T +++L AC  +GL+ +GM    S +  YR +   +    +VD+  + G ++ A+ +
Sbjct: 367 DWITFVAVLLACNHAGLVDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKL 426

Query: 369 FNGM 372
              M
Sbjct: 427 IRSM 430



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 104/230 (45%), Gaps = 29/230 (12%)

Query: 55  LISSLALCRQMGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113
           +I+     +++ LA  +F D+    ++  +N +I   V+NS      ++F  M E+G+  
Sbjct: 223 MITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRP 282

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           ++      L  C+  +   L + IH ++  C                 KCG +G   A K
Sbjct: 283 NSSGLSSALLGCSELSALCLGRQIHQIVMYC-----------------KCGELGD--AWK 323

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGE 229
           LF +M ++D+V+WN+MI+G  + G   +A  LF EM +     D +++  +L     AG 
Sbjct: 324 LFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGL 383

Query: 230 MNLAFELFEKIPHRNIVS-----WSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +++    F+ +     V      ++ MV    + G +E A  L   MP +
Sbjct: 384 VDIGMTYFDSMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFR 433


>gi|242058523|ref|XP_002458407.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
 gi|241930382|gb|EES03527.1| hypothetical protein SORBIDRAFT_03g032890 [Sorghum bicolor]
          Length = 695

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 312/573 (54%), Gaps = 44/573 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-- 125
           A  +F+ +  P   L    +    + SL+ +   V   +  +G    +   P +LK+C  
Sbjct: 127 ARHLFDVVPRPTAALCCAFLSGLSKLSLHQEFIEVVSSLHRRGGAIPSGCIPLVLKSCAQ 186

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           +  +        HAL+   G  GD+FV  +L+D Y+K G +  +L    F  M  +D + 
Sbjct: 187 SAASCQGSQTHCHALVR--GMLGDVFVQTALVDFYAKNGDMDSALMA--FKEMPVKDPIP 242

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-- 243
            N +I G  K G++ EARRLFD MP R + SWN+++  YA  GE   A  LF+++     
Sbjct: 243 MNCLITGYSKSGDVEEARRLFDSMPRRTSASWNSMIACYAHGGEFREALTLFDQMLREGA 302

Query: 244 --NIVSWSTMVWGYSKDGD-------------------------MEM---------AKLL 267
             N ++ +T+    +K GD                         MEM         A+  
Sbjct: 303 SPNAITITTVFSICAKTGDLDTGRRARAWIREEDLQNVIVHTALMEMYVKCRAIDEARHE 362

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FDRMP + +V W+ +I+GY++ G   E+  L+++M+    KP++ TL+ +L+ACA+ G  
Sbjct: 363 FDRMPRRDVVAWSTMIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 422

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++   I        + + +AL+DMY KCG +  A SVFN M +K +V+WN+M+ GL
Sbjct: 423 ELGEQIGNYIESQTLPLTSYLGSALIDMYTKCGHVARARSVFNRMEQKVVVTWNSMIRGL 482

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A++G  E A+ L+ +M  +G  P++ TFV +L ACTHAG +DKG+ +F  M++   + PQ
Sbjct: 483 ALNGFAEDAIALYRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQ 542

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           VEH  C++DLL +SGRL EA + +  M VEPNA+IW TLL ACR H  VELA+     L+
Sbjct: 543 VEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAGKLV 602

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L+ ++   Y +LSNI+A  G W  V  +R  M+    QK S  S +E+D EVH F V D
Sbjct: 603 ALEPNNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQD 662

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
             HP+S +IY +++ LG  L+      +L +E+
Sbjct: 663 TYHPRSAEIYNVVDGLGLQLERTSPDHELISEV 695



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 22/317 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L+  ++  A I + DLQ +  +   L+     CR +  A   F+ +   DV  ++T
Sbjct: 318 KTGDLDTGRRARAWIREEDLQ-NVIVHTALMEMYVKCRAIDEARHEFDRMPRRDVVAWST 376

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN    ++  +F  M+      +  T   +L AC       L + I   I    
Sbjct: 377 MIAGYSQNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGNYIESQT 436

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y+KCG   V+ A+ +F  M ++ +V+WNSMI GL   G   +A  L
Sbjct: 437 LPLTSYLGSALIDMYTKCG--HVARARSVFNRMEQKVVVTWNSMIRGLALNGFAEDAIAL 494

Query: 206 FDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYS 256
           + +M     + + V++  +L     AG ++     FE++  +  VS      + +V    
Sbjct: 495 YRKMVGDGIQPNEVTFVALLTACTHAGLVDKGIAFFEEMKKKQHVSPQVEHCACIVDLLC 554

Query: 257 KDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           K G + E  K + D       V W+ ++S    +A+  +AK AA      +   L+P++ 
Sbjct: 555 KSGRLWEAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAG-----KLVALEPNNS 609

Query: 313 TLISILAAC-AESGLLG 328
           ++  +L+   A++GL G
Sbjct: 610 SIYVLLSNIYADAGLWG 626


>gi|224137724|ref|XP_002322628.1| predicted protein [Populus trichocarpa]
 gi|222867258|gb|EEF04389.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 325/566 (57%), Gaps = 47/566 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +   ++LF ++   D  +D      ++S     +++  A ++F  +   +V  +NT
Sbjct: 18  KCGLIVDARRLFDRV---DAIKDVVTWTAMLSGYVRLKRIEEAERLFEVMPVKNVVSWNT 74

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    +N    +A  VF  M E+ + +                W               
Sbjct: 75  MIDGYGKNREVDKAIEVFERMHERNMVS----------------W--------------- 103

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                   N++I +  +CG   V  A++ F  M +RD++SW +M+ GL + G + EAR++
Sbjct: 104 --------NAVIAALVQCG--RVEEARRRFDEMPKRDVISWTTMVMGLARSGRVDEARKV 153

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD MPER+ VSWN ++ GYAK   ++ AF+LFE++P RN+ SW+TM+ G+ ++G++  A+
Sbjct: 154 FDRMPERNVVSWNAMVTGYAKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWAR 213

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAES 324
            +F+ MP K +V WT +I+GY ++G ++ A +++ +M ++ G +P++GT +++L AC++ 
Sbjct: 214 KVFNEMPEKNVVSWTTMITGYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDM 273

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG--MTKKDLVSWNA 382
             LG G +VH  I+K  ++  T V +AL++MY+KCG L  A  +F+   ++++DLV WN 
Sbjct: 274 AGLGEGQQVHLLISKSVYQDRTFVASALLNMYSKCGELSIARKIFDDVVISQRDLVLWNG 333

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G +A+ LF  M+  GF P+  ++V +L AC+HAG +D+G+ YF  + RD 
Sbjct: 334 MIAAYAHHGCGMEAIELFEDMQGLGFKPNDVSYVELLSACSHAGLVDEGLNYFDELGRDN 393

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I  + +H+ C++DL GR+GRLKEA   ++ +  + ++ IWG LL  C  H  +E+ +  
Sbjct: 394 SIQLREDHHACLVDLCGRAGRLKEAYDFIKQLGTKASSSIWGGLLAGCNAHGDLEIGQLA 453

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L +    + G Y +LSNI+A+   W + + VRL+MK+   +K  G S +EV N VH 
Sbjct: 454 AKELEKEDPENAGTYLLLSNIYASGRKWREASRVRLKMKEKGLKKQPGCSWIEVGNRVHV 513

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLK 588
           F   D+ H +S  IY +++ +  ++K
Sbjct: 514 FLARDKSHYQSNLIYSLVHDIHAEMK 539



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 194/367 (52%), Gaps = 30/367 (8%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARRLFD 207
           D+    ++I  Y KCG++    A++LF  +   +D+V+W +M++G V+   + EA RLF+
Sbjct: 5   DVVTWTAVISGYIKCGLI--VDARRLFDRVDAIKDVVTWTAMLSGYVRLKRIEEAERLFE 62

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP ++ VSWNT++DGY K  E++ A E+FE++  RN+VSW+ ++    + G +E A+  
Sbjct: 63  VMPVKNVVSWNTMIDGYGKNREVDKAIEVFERMHERNMVSWNAVIAALVQCGRVEEARRR 122

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MP + ++ WT ++ G A  G   EA +++D+M E           ++++  A     
Sbjct: 123 FDEMPKRDVISWTTMVMGLARSGRVDEARKVFDRMPER----------NVVSWNAMVTGY 172

Query: 328 GLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
              M++  + + +      N+   N ++  + + G L  A  VFN M +K++VSW  M+ 
Sbjct: 173 AKNMRLDEAFDLFERMPERNLSSWNTMITGFIQNGELAWARKVFNEMPEKNVVSWTTMIT 232

Query: 386 GLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY----SMER 440
           G    G+ E AL +F  M KD G  P++ TFV VL AC+    + +G Q       S+ +
Sbjct: 233 GYVQEGESESALKVFVEMIKDGGARPNEGTFVNVLGACSDMAGLGEGQQVHLLISKSVYQ 292

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV-EPNAIIWGTLLGACRKH----NA 495
           D   +        ++++  + G L  A ++   + + + + ++W  ++ A   H     A
Sbjct: 293 DRTFVAS-----ALLNMYSKCGELSIARKIFDDVVISQRDLVLWNGMIAAYAHHGCGMEA 347

Query: 496 VELAEEV 502
           +EL E++
Sbjct: 348 IELFEDM 354


>gi|22293716|dbj|BAC10060.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 631

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 182/510 (35%), Positives = 283/510 (55%), Gaps = 35/510 (6%)

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC----- 163
           +GV  + FT+ FLL+AC           +H  I +CG+  D+FV N+L+D Y +C     
Sbjct: 105 QGVPPNGFTFTFLLRACALLGLPRPCGCVHGQIVRCGFGSDVFVQNALMDVYHRCGGGGG 164

Query: 164 ----------------------GVVGVSL-------AKKLFMSMGERDIVSWNSMIAGLV 194
                                  +VGV +       A   F +M ER++VSWN+++AG  
Sbjct: 165 GGVGAARQVFDEMVDRDVVSWNSIVGVYMSSGDATGAMGFFEAMPERNVVSWNTVVAGFA 224

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           + G++  AR +FD MP R+AVSWN ++ GYA +G++  A  +F+++  +++VSW+ MV  
Sbjct: 225 RMGDMVTARAVFDRMPSRNAVSWNLMISGYAMSGDVEAARSVFDRMDQKDVVSWTAMVSA 284

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD-QMEEAGLKPDDGT 313
           Y+K GD++    LFD MP K LV W  +I+GY       EA R +   M E   +PD+ T
Sbjct: 285 YAKIGDLDTVNELFDHMPVKNLVSWNAMITGYNHNSRYDEALRTFQLMMLEGRFRPDEAT 344

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L+S+++ACA+ G +     + + I K        + NAL+DM+AKCG +  A S+F  M 
Sbjct: 345 LVSVVSACAQLGSVEYCNWISSFIGKSNIHLTVALGNALIDMFAKCGDVGRAESIFYKME 404

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            + +++W  M+ G A +G    AL +++ M  EG   D   F+  L AC H G + +G  
Sbjct: 405 TRCIITWTTMISGFAFNGLCRDALLVYNNMCREGVQLDDTVFIAALAACAHGGLLQEGWS 464

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F  M   Y I P++EHYGCM+DLLGR+G L+EA+  ++SMP+EP+ +IW TLL +C  H
Sbjct: 465 IFNEMVERYNIQPRMEHYGCMVDLLGRAGNLQEAILFIESMPLEPSVVIWVTLLCSCVAH 524

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
              EL E V   +  L+  +     ++SN  A  G W+ V + R  M+    +K  G+SS
Sbjct: 525 GNAELIEYVSKKITELEPFNSSYQVLVSNCSALEGRWDGVIDARTSMRNWGIEKVPGSSS 584

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           ++V +EVHEF   D  H + ++IY+ ++ L
Sbjct: 585 IQVGSEVHEFLAKDTRHKRRKEIYETVDGL 614


>gi|297741948|emb|CBI33393.3| unnamed protein product [Vitis vinifera]
          Length = 752

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 180/452 (39%), Positives = 269/452 (59%), Gaps = 32/452 (7%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A++LF +M  +D+VSWNSM+ G  + GE+    + F+EM ERD VSWN ++DG+ + G++
Sbjct: 46  ARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDL 105

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW----------- 279
           N ++E FEKIP+ N VSW TM+ G+++ G +  A+ LFD+MP + +V W           
Sbjct: 106 NSSWEFFEKIPNPNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNC 165

Query: 280 --------------------TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
                               T +I+GY   G   EA +L +QM     KPD  T    L+
Sbjct: 166 HVDEAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLS 224

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           +CA    L +G ++H  + K  +  +  V NAL+ MYAKCGS+ +A  +F  +   D+VS
Sbjct: 225 SCAHLAALQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVS 284

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+++   A++G G +AL LF +M+ EG  PD+ TFVG+L AC+H G ID+G++ F  M 
Sbjct: 285 WNSLIAAYALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMV 344

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           + Y I P  EHY CM+DLLGR+GRL+EA +LV+ M +  NA IWG LLGACR H  +ELA
Sbjct: 345 QAYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELA 404

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +   + L+  +     NY +LSN+ A  G W++VA VR  MK+  A+K  G S +E+ N 
Sbjct: 405 KFAAEKLLEFEPHKTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNR 464

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           VH F   D  HP++ ++  ++ +L   ++  G
Sbjct: 465 VHAFLSEDPAHPRAVELCHILRSLTAHMRNTG 496



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 78/356 (21%), Positives = 149/356 (41%), Gaps = 66/356 (18%)

Query: 220 ILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
           ++  Y + GE+  A  LF  +P++ N V  + MV GY+K+   + A+ LFD MPAK LV 
Sbjct: 1   MITCYTRNGELAKARNLFNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVS 60

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGL---------------------------KPDD 311
           W  +++GY   G  +   + +++M E  +                            P+ 
Sbjct: 61  WNSMLTGYTRNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNT 120

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            + +++L   A  G +    ++   +       N    NA++  Y +   +D A+S+F  
Sbjct: 121 VSWVTMLCGFARFGKIAEARRLFDQMPIR----NVVAWNAMIAAYVQNCHVDEAISLFME 176

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M +K+ +SW  ++ G    G+ ++A  L ++M      PD+ TF   L +C H   +  G
Sbjct: 177 MPEKNSISWTTVINGYVRMGKLDEARQLLNQMPYRN-KPDQSTFACGLSSCAHLAALQVG 235

Query: 432 VQ-YFYSMERDYG------------------------ILPQVEHY-----GCMIDLLGRS 461
            Q +   M+  Y                         +   ++H+       +I     +
Sbjct: 236 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 295

Query: 462 GRLKEALRLVQSMPVE---PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           G  +EAL+L   M VE   P+ + +  +L AC     ++   ++  C+++    +P
Sbjct: 296 GNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 351



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 129/320 (40%), Gaps = 78/320 (24%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-------------- 113
           A ++F+ +   +V  +N +I A VQN    +A  +F++M EK   +              
Sbjct: 139 ARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYVRMGKL 198

Query: 114 ----------------DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
                           D  T+   L +C       + + +H L+ K GY  D+FV N+LI
Sbjct: 199 DEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYATDLFVSNALI 258

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------- 210
             Y+KCG   +S A+ LF  +   D+VSWNS+IA     G   EA +LF +M        
Sbjct: 259 TMYAKCG--SISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVAPD 316

Query: 211 ---------------------------------ERDAVSWNTILDGYAKAGEMNLAFELF 237
                                            E  A  +  ++D   +AG +  AF+L 
Sbjct: 317 EVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAFQLV 376

Query: 238 EKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM----PAKTLVPWTIIISGYAEKGMA 292
             +  + N   W  ++      G++E+AK   +++    P KT   + ++ +  AE G  
Sbjct: 377 RGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKT-SNYVLLSNMQAEAGRW 435

Query: 293 KEAARLYDQMEEAGLKPDDG 312
            E AR+   M+E G +   G
Sbjct: 436 DEVARVRRLMKEKGAEKQPG 455



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/235 (23%), Positives = 101/235 (42%), Gaps = 14/235 (5%)

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
            N   +K N   CNA+V  YAK    D A  +F+ M  KDLVSWN+ML G   +G+    
Sbjct: 18  FNLLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLG 77

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L  F  M +     D  ++  ++      G ++   ++F  +       P    +  M+ 
Sbjct: 78  LQFFEEMAER----DVVSWNLMVDGFVEVGDLNSSWEFFEKIPN-----PNTVSWVTMLC 128

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
              R G++ EA RL   MP+  N + W  ++ A  ++  V   +E +   + +   +  +
Sbjct: 129 GFARFGKIAEARRLFDQMPIR-NVVAWNAMIAAYVQNCHV---DEAISLFMEMPEKNSIS 184

Query: 517 YTMLSNIFAATGDWNKVANVRLQMK-KTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
           +T + N +   G  ++   +  QM  + +  + + A  +     +    V  QLH
Sbjct: 185 WTTVINGYVRMGKLDEARQLLNQMPYRNKPDQSTFACGLSSCAHLAALQVGKQLH 239



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 48/93 (51%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQL   ++K     D +++  LI+  A C  +  A  +F DI   DV  +N+LI A   N
Sbjct: 236 KQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALN 295

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
               +A ++F  M+ +GV  D  T+  +L AC+
Sbjct: 296 GNGREALKLFHKMEVEGVAPDEVTFVGILSACS 328


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 192/585 (32%), Positives = 321/585 (54%), Gaps = 39/585 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L +  ++   K + +++  L    +P +  KL+ + A   + GLA  VF+ I + +V  Y
Sbjct: 42  LDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFY 101

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +IR+ + N L   A  VF DM   G   D++TYP +LKAC+  +   +   +H  ++K
Sbjct: 102 NVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFK 161

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   ++FV N LI  Y KCG   +  A+ +   M  +D+VSWNSM+AG  +  +  +A 
Sbjct: 162 VGLDLNLFVGNGLIALYGKCGC--LPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDAL 219

Query: 204 RLFDEM----PERDAVSWNTILDGYAKAGEMNLAF--ELFEKIPHRNIVSWSTMVWGYSK 257
            +  EM     + DA +  ++L         N+ +  E+F  +  +++VSW+ M+  Y K
Sbjct: 220 DICREMDGVRQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMK 279

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
           +            MP K++                     LY QM +  ++PD  T  S+
Sbjct: 280 NS-----------MPGKSV--------------------DLYLQMGKCEVEPDAITCASV 308

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L AC +   L LG ++H  + + +   N  + N+L+DMYA+CG L++A  VF+ M  +D+
Sbjct: 309 LRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDV 368

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
            SW +++    M GQG  A+ LF+ M++ G  PD   FV +L AC+H+G +++G  YF  
Sbjct: 369 ASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQ 428

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M  DY I P +EH+ C++DLLGRSGR+ EA  +++ MP++PN  +WG LL +CR ++ ++
Sbjct: 429 MTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMD 488

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           +     D L++L   + G Y +LSNI+A  G W +V  +R  MK+ R +K  G S+VE++
Sbjct: 489 IGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELN 548

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           N+VH F   D  HP+S++IY+ ++ L   +K +G+  K  + + +
Sbjct: 549 NQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHD 593



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/299 (26%), Positives = 142/299 (47%), Gaps = 15/299 (5%)

Query: 220 ILDGYAKAGEM-NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
           +LD Y     + N+  ++F    H N      ++  Y+  G+  +A+ +FD +P + ++ 
Sbjct: 41  VLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIF 100

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           + ++I  Y    +  +A  ++  M   G  PD  T   +L AC+ S  L +G+++H ++ 
Sbjct: 101 YNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVF 160

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           K     N  V N L+ +Y KCG L  A  V + M  KD+VSWN+M+ G A + Q + AL 
Sbjct: 161 KVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALD 220

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY----FYSMERDYGILPQVEHYGCM 454
           +   M      PD  T   +L A T+     + V Y    F ++E+       +  +  M
Sbjct: 221 ICREMDGVRQKPDACTMASLLPAVTNTS--SENVLYVEEMFMNLEKK-----SLVSWNVM 273

Query: 455 IDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           I +  ++    +++ L   M    VEP+AI   ++L AC   +A+ L   + + + R K
Sbjct: 274 ISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRACGDLSALLLGRRIHEYVERKK 332


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 318/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L +  QL + + K  +  D  +   L+     C  +  A+ +FN     +V L+N ++ 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q +  A++F +F  MQ  G+  + FTYP +L+ C       L + IH+L  K G+  
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK G   +  A+++   + E+D+VSW SMIAG V+     +A   F E
Sbjct: 379 DMYVSGVLIDMYSKYG--WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 209 MPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGD 260
           M +     D +   + + G A    M    ++  +I       ++  W+ +V  Y++ G 
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  A   F+ +  K  + W  ++SG+A+ G+ +EA +++ +M+++G+K +  T +S L+A
Sbjct: 497 IREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G ++HA + K      T V NAL+ +Y KCGS ++A   F+ M++++ VSW
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSW 616

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG+G +AL LF +MK EG  P+  TF+GVL AC+H G +++G+ YF SM  
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD 676

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +YGI P+ +HY C+ID+ GR+G+L  A + ++ MP+  +A++W TLL AC+ H  +E+ E
Sbjct: 677 EYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A T  W     VR  M+    +K  G S +EV N V
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVV 796

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP +EQIY  +  +   +  VG+
Sbjct: 797 HAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/523 (27%), Positives = 242/523 (46%), Gaps = 19/523 (3%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L +  K +   Q + + AQ  K     + ++   +I+    C    LA +VF D+
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q      A  +F +MQ  G+  D  T   LL AC          
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H+ ++K G   D  +  SL+D Y KCG V  +L   +F S    ++V WN M+    +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV--IFNSSDRTNVVLWNLMLVAFGQ 322

Query: 196 GGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
             +L+++  LF +M       +  ++  IL       E++L  E    +  +        
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLSVKTGFESDMY 381

Query: 252 VWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           V G     YSK G +E A+ + + +  K +V WT +I+GY +    K+A   + +M++ G
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           + PD+  L S ++ CA    +  G+++HA I    +  + ++ NALV++YA+CG +  A 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           S F  +  KD ++WN ++ G A  G  E+AL +F RM   G   + +TFV  L A  +  
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            I +G Q  ++     G   + E    +I L G+ G  ++A      M  E N + W T+
Sbjct: 562 EIKQGKQ-IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTI 619

Query: 487 LGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           + +C +H       E LD   ++K  G  P + T +  + A +
Sbjct: 620 ITSCSQHGR---GLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 219/469 (46%), Gaps = 17/469 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF ++   D   +  ++    QN L  +A  ++  M   GV    +    +L +C  
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   ++IHA  YK G+  +IFV N++I  Y +CG     LA+++F  M  RD V++N
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG--SFRLAERVFCDMPHRDTVTFN 213

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+G  + G    A  +F+EM       D V+ +++L   A  G++    +L   +   
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 244 NIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            I S   M       Y K GD+E A ++F+      +V W +++  + +     ++  L+
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM+ AG++P+  T   IL  C  +  + LG ++H+   K  F+ +  V   L+DMY+K 
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKY 393

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L+ A  V   + +KD+VSW +M+ G   H   + AL  F  M+  G  PD       +
Sbjct: 394 GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAI 453

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
             C     + +G+Q  ++     G    V  +  +++L  R GR++EA    + +    +
Sbjct: 454 SGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKD 511

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFAA 526
            I W  L+    +     L EE L   +R+   G     +T +S + A+
Sbjct: 512 EITWNGLVSGFAQSG---LHEEALKVFMRMDQSGVKHNVFTFVSALSAS 557



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 217/447 (48%), Gaps = 26/447 (5%)

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           A+   +F D   +        +   L+AC  NG+ W  +V  IHA     G      V N
Sbjct: 23  AKVLSLFADKARQHGGLGPLDFACALRACRGNGRRW-QVVPEIHAKAVTRGLGKYRIVGN 81

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
            LID YSK G+V    A+++F  +  RD VSW +M++G  + G   EA  L+ +M     
Sbjct: 82  LLIDLYSKNGLV--LPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGV 139

Query: 215 VS----WNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMAK 265
           V      +++L    KA E+     L     +++     I   + ++  Y + G   +A+
Sbjct: 140 VPTPYVLSSVLSSCTKA-ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAE 198

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F  MP +  V +  +ISG+A+ G  + A  ++++M+ +GL PD  T+ S+LAACA  G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H+ + K     +  +  +L+D+Y KCG ++ A+ +FN   + ++V WN ML 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
                    K+  LF +M+  G  P+++T+  +L  CT    ID G Q  +S+    G  
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSLSVKTGFE 377

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEE 501
             +   G +ID+  + G L++A R+++ M  E + + W +++    +H    +A+   +E
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +  C     G  P N  + S I    G
Sbjct: 437 MQKC-----GIWPDNIGLASAISGCAG 458



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 180/374 (48%), Gaps = 14/374 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           + ++  +Q+ +  +K   + D Y++  LI   +    +  A +V   +++ DV  + ++I
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              VQ+     A   F +MQ+ G++ DN      +  C G N       IHA IY  GY 
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS 478

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+ + N+L++ Y++CG +  + +   F  +  +D ++WN +++G  + G   EA ++F 
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSS--FEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWG-----YSKD 258
            M ++  V  N      A +   NLA     K  H  ++    S+ T V       Y K 
Sbjct: 537 RM-DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC 595

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G  E AK+ F  M  +  V W  II+  ++ G   EA  L+DQM++ G+KP+D T I +L
Sbjct: 596 GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVL 655

Query: 319 AACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKD 376
           AAC+  GL+  G+    S+ ++Y  +   +    ++D++ + G LD A      M    D
Sbjct: 656 AACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAAD 715

Query: 377 LVSWNAMLYGLAMH 390
            + W  +L    +H
Sbjct: 716 AMVWRTLLSACKVH 729


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 201/587 (34%), Positives = 313/587 (53%), Gaps = 30/587 (5%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            HKC   +  KQ  + +I   L    +    ++ S    + +G  + +F+ +  P + L+
Sbjct: 15  FHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSAT--KDLGYTLLLFDRLATPYIFLW 72

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN---GKNWFHLVQMIHAL 140
           NT+IR    +S        +  ++  GV  D  T+P LLKA +    +N F      +A 
Sbjct: 73  NTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQF----YAH 128

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G   D FV NSL+ +++ CG V  S  ++LF+   ++D+VSW ++I G ++ G   
Sbjct: 129 IVKFGLDFDAFVQNSLVSAFAHCGYVDCS--RRLFIETAKKDVVSWTALINGCLRNGRAV 186

Query: 201 EARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-- 254
           EA   F EM     E D V+  ++L   A   ++      F +  H   V    ++W   
Sbjct: 187 EALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDV-----WFGRWVHGFYVESGRVIWDVY 241

Query: 255 --------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
                   YSK G  + A  +F+ MP + LV W  +I+GY +    KEA +++ +M   G
Sbjct: 242 VGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEG 301

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           ++P+  T+ S L ACA+ G L  G  +H  +++ +   N+ +  ALVDMY+KCG +D A+
Sbjct: 302 IEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEAL 361

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VF  +  KD+  W AM+ GLAM G    +L LFS+M      P+  TF+GVL AC H G
Sbjct: 362 LVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +D+G++ F  M  DY + P V+HYGCM+DLLGR+GRL+EA++ ++SMP+EP   +WG L
Sbjct: 422 LVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGAL 481

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
              C  H A EL E + + LI+L+    G Y +L+N+++    W   ANVR  MK     
Sbjct: 482 FSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVD 541

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           K  G S +EV+  +HEF   D+ H +S  +Y M+ ++   LK   +A
Sbjct: 542 KSPGCSWIEVNGVIHEFIAFDKSHTESINVYMMLESVSAQLKLATYA 588


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 318/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L +  QL + + K  +  D  +   L+     C  +  A+ +FN     +V L+N ++ 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q +  A++F +F  MQ  G+  + FTYP +L+ C       L + IH+L  K G+  
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK G   +  A+++   + E+D+VSW SMIAG V+     +A   F E
Sbjct: 379 DMYVSGVLIDMYSKYG--WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 209 MPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGD 260
           M +     D +   + + G A    M    ++  +I       ++  W+ +V  Y++ G 
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  A   F+ +  K  + W  ++SG+A+ G+ +EA +++ +M+++G+K +  T +S L+A
Sbjct: 497 IREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G ++HA + K      T V NAL+ +Y KCGS ++A   F+ M++++ VSW
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSW 616

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG+G +AL LF +MK EG  P+  TF+GVL AC+H G +++G+ YF SM  
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD 676

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +YGI P+ +HY C+ID+ GR+G+L  A + ++ MP+  +A++W TLL AC+ H  +E+ E
Sbjct: 677 EYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A T  W     VR  M+    +K  G S +EV N V
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVV 796

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP +EQIY  +  +   +  VG+
Sbjct: 797 HAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/523 (27%), Positives = 242/523 (46%), Gaps = 19/523 (3%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L +  K +   Q + + AQ  K     + ++   +I+    C    LA +VF D+
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q      A  +F +MQ  G+  D  T   LL AC          
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H+ ++K G   D  +  SL+D Y KCG V  +L   +F S    ++V WN M+    +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV--IFNSSDRTNVVLWNLMLVAFGQ 322

Query: 196 GGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
             +L+++  LF +M       +  ++  IL       E++L  E    +  +        
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLSVKTGFESDMY 381

Query: 252 VWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           V G     YSK G +E A+ + + +  K +V WT +I+GY +    K+A   + +M++ G
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           + PD+  L S ++ CA    +  G+++HA I    +  + ++ NALV++YA+CG +  A 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           S F  +  KD ++WN ++ G A  G  E+AL +F RM   G   + +TFV  L A  +  
Sbjct: 502 SSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            I +G Q  ++     G   + E    +I L G+ G  ++A      M  E N + W T+
Sbjct: 562 EIKQGKQ-IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTI 619

Query: 487 LGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           + +C +H       E LD   ++K  G  P + T +  + A +
Sbjct: 620 ITSCSQHGR---GLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/470 (26%), Positives = 219/470 (46%), Gaps = 17/470 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF ++   D   +  ++    QN L  +A  ++  M   GV    +    +L +C  
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   ++IHA  YK G+  +IFV N++I  Y +CG     LA+++F  M  RD V++N
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG--SFRLAERVFCDMPHRDTVTFN 213

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+G  + G    A  +F+EM       D V+ +++L   A  G++    +L   +   
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 244 NIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            I S   M       Y K GD+E A ++F+      +V W +++  + +     ++  L+
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM+ AG++P+  T   IL  C  +  + LG ++H+   K  F+ +  V   L+DMY+K 
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKY 393

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L+ A  V   + +KD+VSW +M+ G   H   + AL  F  M+  G  PD       +
Sbjct: 394 GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAI 453

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
             C     + +G+Q  ++     G    V  +  +++L  R GR++EA    + +    +
Sbjct: 454 SGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKD 511

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFAAT 527
            I W  L+    +     L EE L   +R+   G     +T +S + A+ 
Sbjct: 512 EITWNGLVSGFAQSG---LHEEALKVFMRMDQSGVKHNVFTFVSALSASA 558



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 217/447 (48%), Gaps = 26/447 (5%)

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           A+   +F D   +        +   L+AC  NG+ W  +V  IHA     G      V N
Sbjct: 23  AKVLSLFADKARQHGGLGPLDFACALRACRGNGRRW-QVVPEIHAKAVTRGLGKYRIVGN 81

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
            LID YSK G+V    A+++F  +  RD VSW +M++G  + G   EA  L+ +M     
Sbjct: 82  LLIDLYSKNGLV--LPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGV 139

Query: 215 VS----WNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMAK 265
           V      +++L    KA E+     L     +++     I   + ++  Y + G   +A+
Sbjct: 140 VPTPYVLSSVLSSCTKA-ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAE 198

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F  MP +  V +  +ISG+A+ G  + A  ++++M+ +GL PD  T+ S+LAACA  G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H+ + K     +  +  +L+D+Y KCG ++ A+ +FN   + ++V WN ML 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
                    K+  LF +M+  G  P+++T+  +L  CT    ID G Q  +S+    G  
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSLSVKTGFE 377

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEE 501
             +   G +ID+  + G L++A R+++ M  E + + W +++    +H    +A+   +E
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +  C     G  P N  + S I    G
Sbjct: 437 MQKC-----GIWPDNIGLASAISGCAG 458



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 180/374 (48%), Gaps = 14/374 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           + ++  +Q+ +  +K   + D Y++  LI   +    +  A +V   +++ DV  + ++I
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              VQ+     A   F +MQ+ G++ DN      +  C G N       IHA IY  GY 
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS 478

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+ + N+L++ Y++CG +  + +   F  +  +D ++WN +++G  + G   EA ++F 
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSS--FEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWG-----YSKD 258
            M ++  V  N      A +   NLA     K  H  ++    S+ T V       Y K 
Sbjct: 537 RM-DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC 595

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G  E AK+ F  M  +  V W  II+  ++ G   EA  L+DQM++ G+KP+D T I +L
Sbjct: 596 GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVL 655

Query: 319 AACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKD 376
           AAC+  GL+  G+    S+ ++Y  +   +    ++D++ + G LD A      M    D
Sbjct: 656 AACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAAD 715

Query: 377 LVSWNAMLYGLAMH 390
            + W  +L    +H
Sbjct: 716 AMVWRTLLSACKVH 729


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 324/569 (56%), Gaps = 19/569 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+  +++   LQ + ++  KL++  +   Q+  A K+F++   PDV ++N +IR+  +N+
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           +      ++  M+  GV  D FT+P++LKAC     F L  +IH  I K G+  D+FV N
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
            L+  Y+KCG +GV  AK +F  +  R IVSW S+I+G  + G+  EA R+F +M     
Sbjct: 194 GLVALYAKCGHIGV--AKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGV 251

Query: 213 --DAVSWNTILDGYAKAGEMNLAFEL--------FEKIPHRNIVSWSTMVWGYSKDGDME 262
             D ++  +IL  Y    ++     +         E  P   I    ++   Y+K G + 
Sbjct: 252 KPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLI----SLTAFYAKCGLVT 307

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           +AK  FD+M    ++ W  +ISGYA+ G A+EA  L+  M    +KPD  T+ S + A A
Sbjct: 308 VAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASA 367

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           + G L L   +   ++K  +  +  V  +L+DMYAKCGS++ A  VF+  + KD+V W+A
Sbjct: 368 QVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSA 427

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G  +HGQG +A+ L+  MK  G  P+  TF+G+L AC H+G + +G + F+ M +D+
Sbjct: 428 MIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDF 486

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I+P+ EHY C++DLLGR+G L EA   +  +P+EP   +WG LL AC+ +  V L E  
Sbjct: 487 EIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYA 546

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + L  L   + G+Y  LSN++A++  W+ VA+VR+ M++    K  G S +E++ ++  
Sbjct: 547 ANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQA 606

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           F V D+ HP +++I+  +  L + LK VG
Sbjct: 607 FHVGDKSHPMAKEIFDELQRLERRLKEVG 635



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 10/243 (4%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           P W +    L   L+      +L Q + +   +IK+ L+ +P +   L +  A C  + +
Sbjct: 253 PDWIA----LVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTV 308

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A   F+ ++  +V ++N +I    +N    +A  +F  M  + +  D+ T    + A   
Sbjct: 309 AKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQ 368

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L Q +   + K  Y  DIFV  SLID Y+KCG   V  A+++F    ++D+V W+
Sbjct: 369 VGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCG--SVEFARRVFDRNSDKDVVMWS 426

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +MI G    G+  EA  L+  M +     + V++  +L     +G +   +ELF  +   
Sbjct: 427 AMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMKDF 486

Query: 244 NIV 246
            IV
Sbjct: 487 EIV 489


>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
          Length = 648

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 184/525 (35%), Positives = 299/525 (56%), Gaps = 43/525 (8%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D+ T+PFL+KAC    +      +   + K G+  D+FV N+ +  +S  G   ++ A++
Sbjct: 120 DHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFWSVRG--PMAFARR 177

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLF------------DEMPERDAVS----- 216
           LF     RD+VSWN++I G V+ G   EA  LF            DE+    AVS     
Sbjct: 178 LFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVTVIGAVSGCAQM 237

Query: 217 ------------------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
                                    N ++D Y K G + LA  +FE+I +R  VSW+TM+
Sbjct: 238 GDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERISNRTAVSWTTMI 297

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            G+++ G ME A++LFD MP + + PW  +++GY +    KEA  L+ +M+++ + P++ 
Sbjct: 298 VGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEI 357

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T++++L+AC++ G L +GM VH  I++++   +  +  +LVDMYAKCG++  A+ VFN +
Sbjct: 358 TMVNLLSACSQLGALEMGMWVHHYIDRHKLHLSVALGTSLVDMYAKCGNIKKAICVFNEI 417

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             ++ ++W +M+ GLA HG  ++A+  F RM D G  PD+ TF+GVL AC HAG ++ G 
Sbjct: 418 PVQNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGR 477

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           Q+F  M   Y +  +++HY CMIDLLGR+G L EA +LV +MP++P+A++WG L  ACR 
Sbjct: 478 QFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNAMPMDPDAVVWGALFFACRM 537

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  + L E+    L+ L  SD G Y +L+N++A      K   VR+ M+    +K  G S
Sbjct: 538 HGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKVPGCS 597

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            +E++  VHEF V D+ H  +  IY  ++ +   ++ + +   +S
Sbjct: 598 CIELNGVVHEFIVKDKSHLDTNAIYDCLHEITLQMRHIANLIDIS 642



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 15/267 (5%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           RL+   +    KC +L     +F +I      R       +I   A    M  A  +F++
Sbjct: 260 RLMNAVMDMYVKCGSLELANSVFERIS----NRTAVSWTTMIVGHARLGMMEDARMLFDE 315

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + + DV  +N L+   VQN    +A  +F +MQ+  V  +  T   LL AC+      + 
Sbjct: 316 MPERDVFPWNALMAGYVQNKQGKEAIALFHEMQKSKVDPNEITMVNLLSACSQLGALEMG 375

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             +H  I +      + +  SL+D Y+KCG   +  A  +F  +  ++ ++W SMI GL 
Sbjct: 376 MWVHHYIDRHKLHLSVALGTSLVDMYAKCG--NIKKAICVFNEIPVQNALTWTSMICGLA 433

Query: 195 KGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNI 245
             G   EA    +R+ D   + D +++  +L     AG +    + F  +       R +
Sbjct: 434 NHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKM 493

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             +S M+    + G ++ A+ L + MP
Sbjct: 494 KHYSCMIDLLGRAGHLDEAEQLVNAMP 520



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 95/210 (45%), Gaps = 5/210 (2%)

Query: 298 LYDQMEEAG-LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
           LY  +  +G  +PD  T   ++ ACA       G  V   + K  F  +  V NA +  +
Sbjct: 107 LYRALLHSGSARPDHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAMHFW 166

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKYT 414
           +  G +  A  +F+    +D+VSWN ++ G    G   +AL LF R+ ++G    PD+ T
Sbjct: 167 SVRGPMAFARRLFDESPVRDVVSWNTLIGGYVRSGLPREALELFWRLAEDGNAVRPDEVT 226

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
            +G +  C   G ++ G +  +    + G+   V     ++D+  + G L+ A  + + +
Sbjct: 227 VIGAVSGCAQMGDLELG-KRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVFERI 285

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
                A+ W T++    +   +E A  + D
Sbjct: 286 S-NRTAVSWTTMIVGHARLGMMEDARMLFD 314


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 196/565 (34%), Positives = 309/565 (54%), Gaps = 70/565 (12%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +NQ KQ+ A  ++  L    ++  KL+        +  A  +F+ I  P V+LYN  I+ 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQ----LPDLPYACTLFDQIPKPSVYLYNKFIQT 56

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
                   + + ++  M  +G   + +++ FL  AC      +  QM+H+   K G+  D
Sbjct: 57  FSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASD 116

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +F   +L+D Y+K G+                                 L  AR+LFDEM
Sbjct: 117 MFAMTALLDMYAKLGM---------------------------------LRSARQLFDEM 143

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           P RD  +WN+++ GYA++G M  A ELF K+P RN++SW+ ++                 
Sbjct: 144 PVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALI----------------- 186

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLG 328
                         SGYA+ G   +A  ++  +E E G KP++ ++ S+L AC++ G L 
Sbjct: 187 --------------SGYAQNGKYAKALEMFIGLENEKGTKPNEVSIASVLPACSQLGALD 232

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGL 387
           +G ++ A      F  N  V NA+++++A+CG+++ A  VF+ + +K++L SWN M+ GL
Sbjct: 233 IGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGL 292

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A+HG+   AL L+ +M      PD  TFVG+L ACTH G + +G Q F SME  + + P+
Sbjct: 293 AVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPK 352

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           +EHYGC++DLLGR+G L+EA  L+Q+MP+ P+++IWGTLLGAC  H  VEL E   + L 
Sbjct: 353 LEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLF 412

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
           +L+  +PGNY +LSNI+A  GDW+ VA +R  MK     K +G S +EV + +HEF V D
Sbjct: 413 KLEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVED 472

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGH 592
           + H KS +IY +++ +   +K   H
Sbjct: 473 RSHLKSGEIYALLHKIYDIIKLHKH 497


>gi|51535410|dbj|BAD37280.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125596587|gb|EAZ36367.1| hypothetical protein OsJ_20695 [Oryza sativa Japonica Group]
 gi|218197849|gb|EEC80276.1| hypothetical protein OsI_22264 [Oryza sativa Indica Group]
          Length = 517

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 184/504 (36%), Positives = 289/504 (57%), Gaps = 36/504 (7%)

Query: 55  LISSLALCR-QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113
           L+S +A  R +MG A KVF+ I  PD+ ++N ++R          AF V+  M E     
Sbjct: 38  LLSCVATFRGRMGYARKVFDGIPRPDLFMHNAMVRGYAHAGAPGDAFAVYRRMTEASRLR 97

Query: 114 -DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            D FT+ +LL+AC G       + +H  + K G+  D +V N+LI+ ++KCG        
Sbjct: 98  PDAFTFCYLLRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCG-------- 149

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
                                    +L  A  L DE  E D V+W+ ++ G+A  G+M  
Sbjct: 150 -------------------------DLRVASVLLDEAGEGDVVAWSAVIAGHAARGDMAA 184

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A ++F++  H++IV W+ M+  Y+K G+ME A+ LFDR P K +V W  II+GYA +GM 
Sbjct: 185 ARKMFDECTHKDIVCWNVMLGAYAKHGEMENARELFDRAPEKDVVSWNTIITGYAAQGML 244

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNA 351
           K A  ++D+M  AG  PD+ T++S+L+ CA +GLL  G  +H  ++ + R   +  V NA
Sbjct: 245 KHALEVFDEMRAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVGNA 304

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           LV MYAKCG L  A+  FN M   D+ +WN+++ GLA HGQ E+++  F +M ++   P+
Sbjct: 305 LVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIHPN 364

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           + +F+ VL AC+HAG ++ G ++FY M+  YGI P   HY C++D+LGR+G L EA  +V
Sbjct: 365 EISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYAIV 424

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
            +M  EP+A++W TLLGACR H  + L + V + L+ +      +Y +LS I+A++G+W 
Sbjct: 425 SNMRCEPSAVVWRTLLGACRTHGNMTLGKLVREKLLNMNEDASADYVLLSGIYASSGEWL 484

Query: 532 KVANVRLQMKKTRAQKPSGASSVE 555
            V   R  M +   +K +G + ++
Sbjct: 485 GVETERRSMDRRGIRKAAGYAQID 508



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 164/386 (42%), Gaps = 61/386 (15%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L  ++   Q+   ++KL   +D Y+   LI+  A C  + +A  + ++  + DV
Sbjct: 107 LRACAGLPGSRAGRQVHGAVVKLGFLKDAYVRNALINMFAKCGDLRVASVLLDEAGEGDV 166

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ +I         A A ++F +   K                               
Sbjct: 167 VAWSAVIAGHAARGDMAAARKMFDECTHK------------------------------- 195

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
                   DI   N ++ +Y+K G   +  A++LF    E+D+VSWN++I G    G L 
Sbjct: 196 --------DIVCWNVMLGAYAKHGE--MENARELFDRAPEKDVVSWNTIITGYAAQGMLK 245

Query: 201 EARRLFDEMPERDAVSWN----TILD--------GYAKAGEMNLAFELFEKIPHRNIVSW 248
            A  +FDEM    A  W     TI+         G   AG M       E+ P  +IV  
Sbjct: 246 HALEVFDEM---RAAGWTPDEATIVSLLSCCANTGLLDAGRMIHHQLHLERRPWISIVVG 302

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + +V  Y+K GD+  A   F+ M    +  W  +I G A  G A+++ R + +M E  + 
Sbjct: 303 NALVSMYAKCGDLHTAVEGFNTMKDTDVWTWNSVIGGLAFHGQAEQSVRFFKKMLEKRIH 362

Query: 309 PDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           P++ + + +L AC+ +GL+  G K  +   ++Y  + N    + +VDM  + G LD A +
Sbjct: 363 PNEISFLCVLGACSHAGLVEDGQKFFYLMKDRYGIEPNARHYSCIVDMLGRAGLLDEAYA 422

Query: 368 VFNGM-TKKDLVSWNAMLYGLAMHGQ 392
           + + M  +   V W  +L     HG 
Sbjct: 423 IVSNMRCEPSAVVWRTLLGACRTHGN 448


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  358 bits (918), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 309/574 (53%), Gaps = 20/574 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL   +I      DP +A  L++  +   Q+  A+K+FN + D +V  +N +I   VQN 
Sbjct: 94  QLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNG 153

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              +A  +F +M   GV  D+ T+   L +          + IH  I + G   D+F+ +
Sbjct: 154 FMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKS 213

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRLFDEMP 210
           +LID Y KC  VG  +A K+F      DIV   ++I+G V  G  ++A    R L +E  
Sbjct: 214 ALIDIYFKCRDVG--MACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKM 271

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW---------STMVWGYSKDGDM 261
             +AV+  ++L   A    +NL  EL     H NI+           S ++  Y+K G +
Sbjct: 272 SPNAVTLASVLPACAGLATLNLGKEL-----HANILKHGLDERRHVGSAIMDMYAKCGRL 326

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           ++A  +F RMP K  V W  II+  ++ G  +EA  L+ QM   GL  D  ++ + L+AC
Sbjct: 327 DLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSAC 386

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G  +H+ + K  F       +AL+DMY KCG+L  A  VF+ M +K+ VSWN
Sbjct: 387 ANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWN 446

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +++     HG  E +L LF +M ++G  PD  TF+ +L AC HAG +DKG+QYF  M  +
Sbjct: 447 SIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEE 506

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI  ++EHY C++DL GR+GRL EA   +++MP  P+  +WGTLLGACR H  VELAE 
Sbjct: 507 YGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEV 566

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
              CL+ L   + G Y +LSN+ A  G W  V  +R  MKK   QK  G S +EV+   H
Sbjct: 567 ASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTH 626

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
            F   D  HP+S QIY ++N L  +L+  G+  K
Sbjct: 627 MFVAADGSHPESAQIYSVLNNLLLELRKEGYCPK 660



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 145/494 (29%), Positives = 242/494 (48%), Gaps = 14/494 (2%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D ++   LI   A    +  A ++F+ + + D  L+N ++   V+      A +VF DM+
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMR 65

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
                 ++ T+  +L  C  +        +H L+  CG+  D  V N+L+  YSK G   
Sbjct: 66  NCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFG--Q 123

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG 223
           +S A KLF +M + ++V+WN MIAG V+ G + EA  LF EM       D++++ + L  
Sbjct: 124 LSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPS 183

Query: 224 YAKAGEMNLAFELFEKIPHRNIV----SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
             ++  +    E+   I    I       S ++  Y K  D+ MA  +F +     +V  
Sbjct: 184 VTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVC 243

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           T IISGY   G+  +A  ++  + E  + P+  TL S+L ACA    L LG ++HA+I K
Sbjct: 244 TAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILK 303

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
           +      +V +A++DMYAKCG LD A  +F  M +KD V WNA++   + +G+ ++A+ L
Sbjct: 304 HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDL 363

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F +M  EG   D  +    L AC +   +  G +  +S         +V     +ID+ G
Sbjct: 364 FRQMGREGLSYDCVSISAALSACANLPALHHG-KAIHSFMIKGAFDSEVFAESALIDMYG 422

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           + G L  A R V  M  E N + W +++ A   H  +E++  +   ++   G  P + T 
Sbjct: 423 KCGNLSVA-RCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLE-DGIQPDHVTF 480

Query: 520 LSNIFAATGDWNKV 533
           L+ I +A G   +V
Sbjct: 481 LT-ILSACGHAGQV 493



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 184/387 (47%), Gaps = 14/387 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L ++ +  +L Q K++   I++  +  D ++   LI     CR +G+A K+F    + D+
Sbjct: 181 LPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDI 240

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            +   +I   V N LN  A  +F  + E+ +  +  T   +L AC G    +L + +HA 
Sbjct: 241 VVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHAN 300

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G      V ++++D Y+KCG   + LA ++F  M E+D V WN++I    + G+  
Sbjct: 301 ILKHGLDERRHVGSAIMDMYAKCG--RLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQ 358

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---------RNIVSWSTM 251
           EA  LF +M  R+ +S++ +    A +   NL      K  H           + + S +
Sbjct: 359 EAIDLFRQMG-REGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFDSEVFAESAL 417

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  Y K G++ +A+ +FD M  K  V W  II+ Y   G  + +  L+ +M E G++PD 
Sbjct: 418 IDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDH 477

Query: 312 GTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            T ++IL+AC  +G +  G++    +  +Y           +VD++ + G L+ A     
Sbjct: 478 VTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIK 537

Query: 371 GMT-KKDLVSWNAMLYGLAMHGQGEKA 396
            M    D   W  +L    +HG  E A
Sbjct: 538 NMPFSPDDGVWGTLLGACRVHGNVELA 564



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 141/327 (43%), Gaps = 46/327 (14%)

Query: 14  RRLLEEKLQN--------LHKCK---NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC 62
           R LLEEK+          L  C     LN  K+L A I+K  L    ++   ++   A C
Sbjct: 264 RWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKC 323

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
            ++ LA ++F  + + D   +N +I  C QN    +A  +F  M  +G+  D  +    L
Sbjct: 324 GRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAAL 383

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            AC      H  + IH+ + K  +  ++F  ++LID Y KCG   +S+A+ +F  M E++
Sbjct: 384 SACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCG--NLSVARCVFDMMREKN 441

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE 238
            VSWNS+IA     G L  +  LF +M E     D V++ TIL     AG+++   + F 
Sbjct: 442 EVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFR 501

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
                       M   Y     ME                +  I+  +   G   EA   
Sbjct: 502 -----------CMTEEYGIPARMEH---------------YACIVDLFGRAGRLNEA--- 532

Query: 299 YDQMEEAGLKPDDGTLISILAACAESG 325
           ++ ++     PDDG   ++L AC   G
Sbjct: 533 FETIKNMPFSPDDGVWGTLLGACRVHG 559



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 90/187 (48%), Gaps = 5/187 (2%)

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           F  +  V ++L+ +YA+ G +++A  +F+ M  KD V WN ML G    G+   A+ +F 
Sbjct: 3   FNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFE 62

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGR 460
            M++    P+  TF  VL  C      + G Q +   +   +   P V +   ++ +  +
Sbjct: 63  DMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVAN--ALVAMYSK 120

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
            G+L +AL+L  +MP + N + W  ++    ++  ++ A  +   +I   G  P + T  
Sbjct: 121 FGQLSDALKLFNTMP-DTNVVTWNGMIAGFVQNGFMDEASLLFSEMIS-AGVSPDSITFA 178

Query: 521 SNIFAAT 527
           S + + T
Sbjct: 179 SFLPSVT 185


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 193/560 (34%), Positives = 313/560 (55%), Gaps = 59/560 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C N+ + K++ A I+K  L +  ++  K++       +   A  +F  + DP+  LY
Sbjct: 21  LKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLY 80

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +IRA   N +   A  V               Y  +L   +G+N              
Sbjct: 81  NAMIRAYKHNKVYVLAITV---------------YKQMLGHSHGEN-------------- 111

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
              F D F    ++ S +  G++   L K++                  + K G+ S   
Sbjct: 112 -PIFPDKFTFPFVVKSCA--GLMCYDLGKQVH---------------GHVFKFGQKS--- 150

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
                    + V  N++++ Y K   ++ A ++FE++  R+ VSW+T++ G+ + G M  
Sbjct: 151 ---------NTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRR 201

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +F+ M  KT+  WT I+SGYA  G   +A   + +M+  G++PD+ +L+S+L ACA+
Sbjct: 202 ARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQ 261

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L LG  +H   +K  F  N  VCNAL++MYAKCGS+D    +F+ M ++D++SW+ M
Sbjct: 262 LGALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTM 321

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLA HG+  +A+ LF  M+     P+  TFVG+L AC HAG +++G++YF SM+RDY 
Sbjct: 322 IVGLANHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYN 381

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P VEHYGC+++LLG SGRL +AL L++ MP++P++ IWG+LL +CR H+ +E+A   +
Sbjct: 382 IEPGVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAM 441

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L+ L+ +D GNY +LSN++A  G W+ V+ +R  M+    +K  G SS+EVDN V EF
Sbjct: 442 EHLLELEPADTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEF 501

Query: 564 SVCDQLHPKSEQIYQMINTL 583
           +  D   P S+ IY+++  L
Sbjct: 502 ASGDDSKPFSKAIYRVLKLL 521


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 207/616 (33%), Positives = 332/616 (53%), Gaps = 70/616 (11%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFR 101
            + + +I   L++  + C  +  A  +F++I      DV  +N+++ A V++S    A  
Sbjct: 193 FESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 252

Query: 102 VFLDM----QEKGV--FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
           +F  M     EK     +D  +   +L AC         + +H    + G F D+FV N+
Sbjct: 253 LFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNA 312

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--- 212
           LID+Y+KCG++    A K+F  M  +D+VSWN+M+AG  + G    A  LF  M +    
Sbjct: 313 LIDAYAKCGLM--ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 370

Query: 213 -DAVSWNTILDGYAKAGEMNLAFELFEK------IPH----------------------- 242
            D V+W  ++ GY++ G  + A  LF +      +P+                       
Sbjct: 371 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 430

Query: 243 --------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWT 280
                                +++ ++ ++  YSK    + A+ +FD +P   + +V WT
Sbjct: 431 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 490

Query: 281 IIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASI- 337
           ++I G+A+ G + +A +L+ +M  E  G+ P+  T+  IL ACA    + +G ++HA + 
Sbjct: 491 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 550

Query: 338 NKYRFKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             +R++ +   V N L+DMY+KCG +D A  VF+ M++K  +SW +M+ G  MHG+G +A
Sbjct: 551 RHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 610

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +F +M+  GF PD  TF+ VL AC+H G +D+G+ YF SM  DYG+ P+ EHY C ID
Sbjct: 611 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAID 670

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL RSGRL +A R V+ MP+EP A++W  LL ACR H+ VELAE  L+ L+ +   + G+
Sbjct: 671 LLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 730

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           YT++SNI+A  G W  VA +R  MKK+  +K  G S V+       F V D+ HP S QI
Sbjct: 731 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 790

Query: 577 YQMINTLGKDLKPVGH 592
           Y ++ +L   +K +G+
Sbjct: 791 YALLESLIDRIKAMGY 806



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 165/591 (27%), Positives = 264/591 (44%), Gaps = 91/591 (15%)

Query: 24  LHKCKNLNQTKQLFAQIIKLD---------------LQRDPYIAPK-----LISSLALCR 63
           L +CK+ N   Q+  QII                  L  +P+I+P+     +++S   C 
Sbjct: 51  LKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACG 110

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
               A+ V   +       +N LIR  ++      A  V   M   G   D+FT P +LK
Sbjct: 111 ATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLK 170

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-- 181
           AC     +      H LI   G+  ++F+ N+L+  YS+CG   +  A  +F  + +R  
Sbjct: 171 ACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG--SLEEASMIFDEITQRGI 228

Query: 182 -DIVSWNSMIAGLVKGGELSEARRLFDEMP---------ER------------------- 212
            D++SWNS+++  VK      A  LF +M          ER                   
Sbjct: 229 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 288

Query: 213 -----------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                            D    N ++D YAK G M  A ++F  +  +++VSW+ MV GY
Sbjct: 289 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 348

Query: 256 SKDGDMEMAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           S+ G+ E A  LF  M  + +    V WT +I+GY+++G + EA  L+ QM  +G  P+ 
Sbjct: 349 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 408

Query: 312 GTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTN---------VCNALVDMYAKCGS 361
            T+IS+L+ACA  G    G ++HA S+       + +         V NAL+DMY+KC S
Sbjct: 409 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468

Query: 362 LDNAMSVFNG--MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG--PDKYTFVG 417
              A S+F+   + ++++V+W  M+ G A +G    AL LF  M  E +G  P+ YT   
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 528

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPV 476
           +L AC H   I  G Q    + R +           C+ID+  + G +  A  +  SM  
Sbjct: 529 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS- 587

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + +AI W +++     H     A ++ D  +R  G  P + T L  ++A +
Sbjct: 588 QKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDITFLVVLYACS 637


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 206/583 (35%), Positives = 312/583 (53%), Gaps = 24/583 (4%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI---------SSLALCRQMGLAIKVF 72
            +L+ CK+++  KQ+    IK      P + PKLI           L   R + L     
Sbjct: 11  HSLNSCKSISHLKQIHGVAIKTPSLSLPNLIPKLIFLSSSSSSSPDLFYIRSILLTHS-- 68

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           +D Q   + L N +IR+  +NS+N        +M   G+  D FT P +LKA        
Sbjct: 69  HDAQFC-LSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIR 127

Query: 133 LVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
             Q IHA   K G  G +++V N+L+  YS CG   +   +K+F     RD+VSW ++I 
Sbjct: 128 EGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCG--SIHDVQKVFDECPHRDLVSWTTLIQ 185

Query: 192 GLVKGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPH----- 242
              K G  S A   F EM +     D  +   +L   +  G++NL  ++   I H     
Sbjct: 186 AFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMK 245

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
            ++   + ++  Y K  D+  A  +FD MP K +V W  +ISG A +G  +EA   +  M
Sbjct: 246 ADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMM 305

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           ++ G+KPD+ TL+ +L +CA  G+L +G  VHA + +     +  V NAL+DMYAKCGS+
Sbjct: 306 QDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSI 365

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           D A  VF  M ++D+ S+ AM++GLA+HG+   A  +FS M   G  P++ TF+G+L AC
Sbjct: 366 DEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMAC 425

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H G + +G +YF+ M   Y + PQ EHYGCMIDLLGR+G +KEA  ++  M + P+   
Sbjct: 426 SHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFA 485

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
            G LLGACR H  V++ E V+  L  L   + G Y +++N++++   W     +R  MK 
Sbjct: 486 CGALLGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKN 545

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
            + +K  G S +EVD  VHEF   D+ HP+S+ I   IN + K
Sbjct: 546 KKMRKTPGCSLIEVDGVVHEFRKGDKSHPRSKVIIANINLIKK 588


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 207/616 (33%), Positives = 332/616 (53%), Gaps = 70/616 (11%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFR 101
            + + +I   L++  + C  +  A  +F++I      DV  +N+++ A V++S    A  
Sbjct: 186 FESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 245

Query: 102 VFLDM----QEKGV--FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
           +F  M     EK     +D  +   +L AC         + +H    + G F D+FV N+
Sbjct: 246 LFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNA 305

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--- 212
           LID+Y+KCG++    A K+F  M  +D+VSWN+M+AG  + G    A  LF  M +    
Sbjct: 306 LIDAYAKCGLM--ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIP 363

Query: 213 -DAVSWNTILDGYAKAGEMNLAFELFEK------IPH----------------------- 242
            D V+W  ++ GY++ G  + A  LF +      +P+                       
Sbjct: 364 LDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEI 423

Query: 243 --------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWT 280
                                +++ ++ ++  YSK    + A+ +FD +P   + +V WT
Sbjct: 424 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 483

Query: 281 IIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASI- 337
           ++I G+A+ G + +A +L+ +M  E  G+ P+  T+  IL ACA    + +G ++HA + 
Sbjct: 484 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 543

Query: 338 NKYRFKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             +R++ +   V N L+DMY+KCG +D A  VF+ M++K  +SW +M+ G  MHG+G +A
Sbjct: 544 RHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 603

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +F +M+  GF PD  TF+ VL AC+H G +D+G+ YF SM  DYG+ P+ EHY C ID
Sbjct: 604 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAID 663

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL RSGRL +A R V+ MP+EP A++W  LL ACR H+ VELAE  L+ L+ +   + G+
Sbjct: 664 LLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 723

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           YT++SNI+A  G W  VA +R  MKK+  +K  G S V+       F V D+ HP S QI
Sbjct: 724 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 783

Query: 577 YQMINTLGKDLKPVGH 592
           Y ++ +L   +K +G+
Sbjct: 784 YALLESLIDRIKAMGY 799



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 165/591 (27%), Positives = 264/591 (44%), Gaps = 91/591 (15%)

Query: 24  LHKCKNLNQTKQLFAQIIKLD---------------LQRDPYIAPK-----LISSLALCR 63
           L +CK+ N   Q+  QII                  L  +P+I+P+     +++S   C 
Sbjct: 44  LKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTGVVASYLACG 103

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
               A+ V   +       +N LIR  ++      A  V   M   G   D+FT P +LK
Sbjct: 104 ATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLK 163

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-- 181
           AC     +      H LI   G+  ++F+ N+L+  YS+CG   +  A  +F  + +R  
Sbjct: 164 ACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG--SLEEASMIFDEITQRGI 221

Query: 182 -DIVSWNSMIAGLVKGGELSEARRLFDEMP---------ER------------------- 212
            D++SWNS+++  VK      A  LF +M          ER                   
Sbjct: 222 DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAV 281

Query: 213 -----------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                            D    N ++D YAK G M  A ++F  +  +++VSW+ MV GY
Sbjct: 282 PQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGY 341

Query: 256 SKDGDMEMAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           S+ G+ E A  LF  M  + +    V WT +I+GY+++G + EA  L+ QM  +G  P+ 
Sbjct: 342 SQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNC 401

Query: 312 GTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTN---------VCNALVDMYAKCGS 361
            T+IS+L+ACA  G    G ++HA S+       + +         V NAL+DMY+KC S
Sbjct: 402 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461

Query: 362 LDNAMSVFNG--MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG--PDKYTFVG 417
              A S+F+   + ++++V+W  M+ G A +G    AL LF  M  E +G  P+ YT   
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 521

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPV 476
           +L AC H   I  G Q    + R +           C+ID+  + G +  A  +  SM  
Sbjct: 522 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMS- 580

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + +AI W +++     H     A ++ D  +R  G  P + T L  ++A +
Sbjct: 581 QKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDITFLVVLYACS 630


>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
          Length = 567

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 197/551 (35%), Positives = 313/551 (56%), Gaps = 45/551 (8%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD---VHLYNTLIRACVQNSLN 96
           ++  DL+R P    +++  L     +  A+   +    P      L   LIRA   ++  
Sbjct: 16  VVSGDLRRSPAHLRRIVPLLPSHPHLAAALCAVHFPLFPSSSATFLQKILIRASASSASP 75

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV-QMIHALIYKCGYFGDIFVPNS 155
             +F  F  +   G+  D FT P LL +      F      +HA   + G+  D+FV N+
Sbjct: 76  GLSFAAFSSLLRCGLVPDRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNA 135

Query: 156 LIDSYSKCGVVGVSLAKKLFMS-MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           L+  Y    +   +  +++F S  G  D+VSWN++I G VK GE+  A+R+FDEMP R+ 
Sbjct: 136 LLAMYG--ALRDAASMREVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPRRNG 193

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPH-------------------------------- 242
           VSW+T++ GYA AGE+++A E+F+++P                                 
Sbjct: 194 VSWSTMVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMP 253

Query: 243 -RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            RN+VSW+ M+ GYS + DM+ A+ LFD MP K +V WT +ISGYA+ G  ++   L+  
Sbjct: 254 VRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRA 313

Query: 302 ME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT--NVCNALVDMYAK 358
           M+ E+ ++P++ T++S+L+ACA    L  G  VHA I+K++   N   N+  AL+DMYAK
Sbjct: 314 MQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAK 373

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           CG  D A+ +FN + +K++ +WNA++  LAM+G    ++  F +MK  G  P+  TFVGV
Sbjct: 374 CGRTDIAVKIFNSLDRKNVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGV 433

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L AC+H G +D+G + F SM    G+ P+V+HYGCM+D+LGR+G L+EA  L++SMP+ P
Sbjct: 434 LTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAP 493

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCL--IRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           + +++G LLGACR H   ++AE V   +  + L     G + ++S+I+AA G W  V   
Sbjct: 494 DVMVFGALLGACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEA 553

Query: 537 RLQMKKTRAQK 547
           R  ++++  +K
Sbjct: 554 RQVVQRSGIRK 564



 Score = 42.7 bits (99), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 26/244 (10%)

Query: 24  LHKCKNLNQTKQ-----LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           L  C NL   ++      F    K+ L  +  +   LI   A C +  +A+K+FN +   
Sbjct: 331 LSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRK 390

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWF 131
           +V  +N LI     N     +   F  M+  G   ++ T+  +L AC+       G+  F
Sbjct: 391 NVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCF 450

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMI 190
                  ++   CG   ++     ++D   + G+  +  A++L  SM    D++ + +++
Sbjct: 451 ------QSMASTCGVQPEVKHYGCMVDMLGRAGL--LEEAEELIRSMPMAPDVMVFGALL 502

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNT-----ILDGYAKAGEMNLAFELFEKIPHRNI 245
                      A R+  E+   +  +  +     I D YA AG+     E  + +    I
Sbjct: 503 GACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGI 562

Query: 246 VSWS 249
             W+
Sbjct: 563 RKWT 566


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 206/572 (36%), Positives = 310/572 (54%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + KQL + ++K  +  D      L+     C  +  A  +FN     +V L+N ++ 
Sbjct: 260 DLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q S  A++F +F  MQ  G+  + FTYP +L+ C       L + IH+L  K G+  
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFES 379

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK   +    A+K+   + +RD+VSW SMIAG V+     EA   F E
Sbjct: 380 DMYVSGVLIDMYSKYRCL--DKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGD 260
           M +      N  L   A A     A     +I  R  VS        W+T+V  Y++ G 
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGR 497

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            E A  LF  +  K  + W  +ISG+ +  + ++A  ++ +M +AG K +  T IS ++A
Sbjct: 498 SEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISA 557

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G +VH    K      T V NAL+ +Y KCGS+++A  +F+ M+ ++ VSW
Sbjct: 558 LANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSW 617

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG+G +AL LF +MK EG  P+  TF+GVL AC+H G +++G+ YF SM  
Sbjct: 618 NTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSN 677

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            YG+ P  +HY C++D+LGR+G+L  A R V  MP+  NA+IW TLL AC+ H  +E+ E
Sbjct: 678 VYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGE 737

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A TG W     VR  MK    +K  G S +EV N V
Sbjct: 738 LAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAV 797

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP S+QIY+ ++ L   L  +G+
Sbjct: 798 HAFFVGDRLHPLSDQIYKFLSELNDRLSKIGY 829



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/524 (25%), Positives = 243/524 (46%), Gaps = 21/524 (4%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L    K K   Q + + AQ+ K     + ++   LI+         LA +VF D+
Sbjct: 146 VLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDM 205

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q      A ++F +MQ  G+  D  T   LL AC         +
Sbjct: 206 LFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGK 265

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAGLV 194
            +H+ + K G   D     SL+D Y KCG   +  A  +F ++G+R ++V WN M+    
Sbjct: 266 QLHSYLLKAGMSFDYITEGSLLDLYVKCG--DIETAHDIF-NLGDRTNVVLWNLMLVAYG 322

Query: 195 KGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
           +  +L+++  +F +M       +  ++  IL      G++ L  E    +  +N      
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG-EQIHSLSIKNGFESDM 381

Query: 251 MVWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            V G     YSK   ++ A+ + + +  + +V WT +I+GY +    +EA   + +M++ 
Sbjct: 382 YVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC 441

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+ PD+  L S  +ACA    +  G+++HA +    +  + ++ N LV++YA+CG  + A
Sbjct: 442 GVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            S+F  +  KD ++WN ++ G       E+AL +F +M   G   + +TF+  + A  + 
Sbjct: 502 FSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANL 561

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
             I +G Q  +      G   + E    +I L G+ G +++A  +   M +  N + W T
Sbjct: 562 ADIKQGKQ-VHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR-NEVSWNT 619

Query: 486 LLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           ++ +C +H       E LD   ++K  G  P + T +  + A +
Sbjct: 620 IITSCSQHGR---GLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 229/501 (45%), Gaps = 20/501 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF ++   D   +  ++    Q  L  +AFR++  M    V    +    +L AC  
Sbjct: 97  ARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTK 156

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   +MIHA +YK  +  + FV N+LI  Y   G     LA+++F  M   D V++N
Sbjct: 157 GKLFAQGRMIHAQVYKQAFCSETFVGNALIALY--LGFGSFKLAERVFCDMLFCDRVTFN 214

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+G  + G    A ++FDEM       D V+  ++L   A  G++    +L   +   
Sbjct: 215 TLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKA 274

Query: 244 NI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            +    ++  +++  Y K GD+E A  +F+      +V W +++  Y +     ++  ++
Sbjct: 275 GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIF 334

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM+  G+ P+  T   IL  C  +G + LG ++H+   K  F+ +  V   L+DMY+K 
Sbjct: 335 GQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
             LD A  +   + K+D+VSW +M+ G   H   E+AL  F  M+D G  PD        
Sbjct: 395 RCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC     + +G+Q  ++     G    +  +  +++L  R GR +EA  L + +    +
Sbjct: 455 SACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREID-HKD 512

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
            I W  L+          L E+ L  ++ +K S  G    +    +A      +A+++ Q
Sbjct: 513 EITWNGLISG---FGQSRLYEQAL--MVFMKMSQAGAKYNVFTFISAISALANLADIK-Q 566

Query: 540 MKKT--RAQKPSGASSVEVDN 558
            K+   RA K    S  EV N
Sbjct: 567 GKQVHGRAVKTGHTSETEVAN 587



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/420 (27%), Positives = 206/420 (49%), Gaps = 22/420 (5%)

Query: 122 LKACNGK-NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           L+AC G+ N + LV  IHA     G   D  + N LID Y+K G+V    A+++F  +  
Sbjct: 49  LQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQ--ARQVFKELSS 106

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF------ 234
           RD VSW +M++G  + G   EA RL+ +M     +    +L     A      F      
Sbjct: 107 RDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMI 166

Query: 235 --ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
             +++++         + ++  Y   G  ++A+ +F  M     V +  +ISG+A+ G  
Sbjct: 167 HAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHG 226

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           + A +++D+M+ +GL+PD  T+ S+LAACA  G L  G ++H+ + K     +     +L
Sbjct: 227 ECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSL 286

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +D+Y KCG ++ A  +FN   + ++V WN ML          K+  +F +M+  G  P+K
Sbjct: 287 LDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNK 346

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
           +T+  +L  CT  G I+ G Q  +S+    G    +   G +ID+  +   L +A ++++
Sbjct: 347 FTYPCILRTCTCTGQIELGEQ-IHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILE 405

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELA----EEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            M  + + + W +++    +H+  E A    +E+ DC     G  P N  + S   A  G
Sbjct: 406 -MLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDC-----GVWPDNIGLASAASACAG 459


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 171/398 (42%), Positives = 256/398 (64%)

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           K G +  AR  FDE P RD    N +L  Y    E+  A ++F+ +P R++VSW+TM+ G
Sbjct: 4   KAGRVDLARDAFDEAPLRDVFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVSWNTMIHG 63

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y+  G++ +A+ +FD    +    W+ +IS YA+   +KEA  L+ +M  A + PD  TL
Sbjct: 64  YAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPDCITL 123

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S+++AC++ G L +G +VH  +   R + +  +  AL+DMYAKCG +++A  VF+ M +
Sbjct: 124 VSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFDRMPE 183

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD+ +W++M+ GLA HG G ++L LFS+M  EG  P+  TFVGVL ACTH G + +G +Y
Sbjct: 184 KDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKY 243

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F SM   +GI P VEHYGCM+DLLGRSG ++EA +L++SM  EP+ IIW  LLGACR H 
Sbjct: 244 FRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHK 303

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            VE+AEE +  L  L     G+Y +LSNI+A    W  VA +R  +++   Q+  G SS+
Sbjct: 304 NVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQRIPGRSSI 363

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           E D ++HEF   D+LHP+S++IY+++  +   LK  G+
Sbjct: 364 EWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGY 401



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 83/163 (50%), Gaps = 2/163 (1%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      +I   A+  ++GLA ++F+  +D D   ++++I A  ++  + +A  ++ +M
Sbjct: 52  RDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREM 111

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
               +  D  T   ++ AC+      +   +H  +       D+ +  +LID Y+KCG  
Sbjct: 112 HAASIIPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCG-- 169

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            +  A+++F  M E+D+ +W+SMI GL   G   E+  LF +M
Sbjct: 170 DIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKM 212



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 60/297 (20%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           I+LDL+    +   LI   A C  +  A +VF+ + + DV  ++++I     + L  ++ 
Sbjct: 151 IELDLK----LGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESL 206

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVP 153
            +F  M  +G+  +  T+  +L AC        GK +F  +  +H +     ++G     
Sbjct: 207 SLFSKMISEGMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYG----- 261

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAG--LVKGGELSEAR----RLF 206
             ++D   + G   V  A++L  SM  E D + W +++    + K  E++E      R+ 
Sbjct: 262 -CMVDLLGRSG--HVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVL 318

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           D + +   V  + I   YA+A       E+ + I   NI                     
Sbjct: 319 DPLGDGHYVLLSNI---YAQANSWEGVAEMRKTIRRDNI--------------------- 354

Query: 267 LFDRMPAKTLVPWT----IIISGYAEKGMAKEAAR----LYDQMEEAGLKPDDGTLI 315
              R+P ++ + W       +SG      +KE  R    + D++++AG KP  G ++
Sbjct: 355 --QRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVL 409


>gi|225451356|ref|XP_002275085.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Vitis vinifera]
          Length = 654

 Score =  357 bits (916), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 211/610 (34%), Positives = 336/610 (55%), Gaps = 54/610 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVF-NDIQDPDV 80
           L KC   +  KQ+ AQI++++L    +   +LI  S++     + +A+ +F +    P++
Sbjct: 38  LEKCSTRDHFKQILAQIMRINLIGQTFPMSRLILFSAITHPENLDMAVLLFRHHTPHPNL 97

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM-IHA 139
           ++YNT+I A +  SLN Q+F  +  +    ++ +  T+ FLL+A   K    ++Q+  HA
Sbjct: 98  YIYNTMISA-LSLSLN-QSFAFYNSLLSSCIYPNRSTFLFLLQA--SKFLSQVMQIHCHA 153

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           +I    Y+G  ++ N+L+  Y +   +G  LA ++F  M   D VS+N MI G  K G  
Sbjct: 154 IITGSFYYG--YLQNTLMKIYLENEKMG--LAYQVFQQMAAPDAVSFNIMIFGYAKKGHN 209

Query: 200 SEARRLFDEM------PE--------------------RDAVSW---------------N 218
            EA +   EM      P+                    +   +W               N
Sbjct: 210 IEALKFLHEMVGLGLKPDEFTMLGLLICCGRLGDAQLGKSVHAWIERRGLIKSSNLILNN 269

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            +LD Y K  E+ +A  +F  I  ++ +SW+TM+ GY+K G++E+A   F+ MP + LV 
Sbjct: 270 ALLDMYVKCKELRIAQSIFNVIVRKDTISWNTMIAGYAKVGNLEIAHNFFEDMPCRDLVS 329

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  II+GYA+KG      RL++ M    + PD  T+I++++A AE G L  G  +H  + 
Sbjct: 330 WNSIIAGYAQKGDCLMVQRLFENMVAENIWPDFVTIINLVSAAAEIGALHHGRWIHGWVV 389

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           + + K +  + +A +DMY KCGS+  A  VF  +T+KD+  W  M+ G A HG G KAL 
Sbjct: 390 RMQMKIDAFLGSAFIDMYWKCGSIKRACMVFREVTEKDVTVWTTMITGFAFHGYGSKALQ 449

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           LF  M+ E   P++ TFV VL AC+H+GF+ +G++ F SM+  YGI P VEHYGC++DLL
Sbjct: 450 LFYEMQ-EYVMPNQVTFVAVLTACSHSGFVSQGLRIFNSMKERYGIEPGVEHYGCLVDLL 508

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           GRSGR  E   +++ MP++P+  IWG +L ACR +  +E+AE     L++L+    G Y 
Sbjct: 509 GRSGRFSEVKDVIEMMPMKPSRSIWGAVLSACRAYGNIEIAEIAGKELLKLEPEKEGGYV 568

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           +LSNI+A +G W     +R  M+    +K +G SSV VD  +HEF   D+ HP+  +I  
Sbjct: 569 LLSNIYATSGRWKHSDKIREIMESRGVKKTAGCSSVVVDGIIHEFVAADKRHPRWIEIQS 628

Query: 579 MINTLGKDLK 588
           ++  L  ++K
Sbjct: 629 ILFCLKSEMK 638


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 310/567 (54%), Gaps = 42/567 (7%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKN 129
           VF+ I +P  H  N L+R   ++S   +   ++ +++    F  D F++P LLKA +  +
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
            F+    IH L  K G+  D F+   LI  Y+ C    +  A+ LF  M   D V+WN +
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCR--RIMDARLLFDKMCHPDAVAWNMI 193

Query: 190 IAGLVKGGELSEARRLFDEMPERD----AVSWNTILDG---------------------- 223
           I G  + G   +A RLF++M   D    +V   T+L                        
Sbjct: 194 IDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGY 253

Query: 224 -------------YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
                        YA  G M+LA ++++ +  ++++  + M+ GY+K G ++ A+ +FD+
Sbjct: 254 AIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQ 313

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           M  + LV W+ +ISGYAE    +EA +L+D+M +    PD  T++S+++AC+  G L   
Sbjct: 314 MIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA 373

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             +H  +++  F    +V NAL+DMYAKCG+L  A  VF  M +K+++SW++M+   AMH
Sbjct: 374 NWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMH 433

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G  + A+ LF RMK+    P+  TF+GVL AC HAG +++G + F SM  ++GI P  EH
Sbjct: 434 GNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREH 493

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+DL  R+  L++A+ L+++MP  PN IIWG+L+ AC+ H   EL E     L+ L+
Sbjct: 494 YGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELE 553

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
               G   +LSNI+A    WN V  +R  M      K   +S +E++N+VH F + D+ H
Sbjct: 554 PDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYH 613

Query: 571 PKSEQIYQMINTLGKDLKPVGHAAKLS 597
            +S++IY+ ++ +   LK VG+    S
Sbjct: 614 KQSDEIYEKLDEVVSKLKLVGYKPSTS 640



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 211/449 (46%), Gaps = 46/449 (10%)

Query: 5   IRAPTWFSKRRL-LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           +RA   F+  R      L+ + K    N   ++     KL    DP+I   LI+  A CR
Sbjct: 111 LRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCR 170

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++  A  +F+ +  PD   +N +I    QN     A R+F DM+   +  D+     +L 
Sbjct: 171 RIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLS 230

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC         + IH  +   GY  D  +  +LI+ Y+ CG   + LA+K++  +  + +
Sbjct: 231 ACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCG--AMDLARKIYDGLSSKHL 288

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +   +M++G  K G + +AR +FD+M ERD V W+ ++ GYA++ +   A +LF+++  +
Sbjct: 289 IVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQK 348

Query: 244 NIV----------------------SW-----------------STMVWGYSKDGDMEMA 264
             V                      +W                 + ++  Y+K G++  A
Sbjct: 349 RSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKA 408

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +F+ MP K ++ W+ +I+ +A  G A  A +L+ +M+E  ++P+  T I +L AC  +
Sbjct: 409 REVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHA 468

Query: 325 GLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
           GL+  G K+ +S IN++           +VD+Y +   L  A+ +   M    +++ W +
Sbjct: 469 GLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGS 528

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           ++    +HG+ E  LG F+  +     PD
Sbjct: 529 LMSACQVHGEAE--LGEFAAKRLLELEPD 555


>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
 gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
 gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
 gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/558 (34%), Positives = 303/558 (54%), Gaps = 51/558 (9%)

Query: 8   PTWFSKRRLLEEKLQNLHKC--------------KNLNQTKQLFAQIIKLDLQRDPYIAP 53
           P  ++ R L +E L+ +  C              K+L + +Q  A ++K  L  D + A 
Sbjct: 16  PQAYNLRLLQKENLKKMSVCSSTPVPILSFTERAKSLTEIQQAHAFMLKTGLFHDTFSAS 75

Query: 54  KLISSLALC---RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
           KL++  A     + +  A  + N I  P+   +N++IRA   +S    A  VF +M    
Sbjct: 76  KLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHNSVIRAYANSSTPEVALTVFREMLLGP 135

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
           VF D +++ F+LKAC     F   + IH L  K G   D+FV N+L++ Y + G   +  
Sbjct: 136 VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFEI-- 193

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
                                          AR++ D MP RDAVSWN++L  Y + G +
Sbjct: 194 -------------------------------ARKVLDRMPVRDAVSWNSLLSAYLEKGLV 222

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + A  LF+++  RN+ SW+ M+ GY+  G ++ AK +FD MP + +V W  +++ YA  G
Sbjct: 223 DEARALFDEMEERNVESWNFMISGYAAAGLVKEAKEVFDSMPVRDVVSWNAMVTAYAHVG 282

Query: 291 MAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
              E   ++++M +++  KPD  TL+S+L+ACA  G L  G  VH  I+K+  +    + 
Sbjct: 283 CYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWVHVYIDKHGIEIEGFLA 342

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            ALVDMY+KCG +D A+ VF   +K+D+ +WN+++  L++HG G+ AL +FS M  EGF 
Sbjct: 343 TALVDMYSKCGKIDKALEVFRATSKRDVSTWNSIISDLSVHGLGKDALEIFSEMVYEGFK 402

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  TF+GVL AC H G +D+  + F  M   Y + P +EHYGCM+DLLGR G+++EA  
Sbjct: 403 PNGITFIGVLSACNHVGMLDQARKLFEMMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEE 462

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           LV  +P +  +I+  +LLGAC++   +E AE + + L+ L   D   Y  +SN++A+ G 
Sbjct: 463 LVNEIPADEASILLESLLGACKRFGQLEQAERIANRLLELNLRDSSGYAQMSNLYASDGR 522

Query: 530 WNKVANVRLQMKKTRAQK 547
           W KV + R  M+  R  +
Sbjct: 523 WEKVIDGRRNMRAERVNR 540



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 124/304 (40%), Gaps = 22/304 (7%)

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I  YA     + A  ++ +M    + PD  +   +L ACA       G ++H    K  
Sbjct: 111 VIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSG 170

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
              +  V N LV++Y + G  + A  V + M  +D VSWN++L      G  ++A  LF 
Sbjct: 171 LVTDVFVENTLVNVYGRSGYFEIARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFD 230

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME-RDYGILPQVEHYGCMIDLLGR 460
            M++     + + F  ++     AG + +  + F SM  RD      V  +  M+     
Sbjct: 231 EMEERNV--ESWNF--MISGYAAAGLVKEAKEVFDSMPVRD------VVSWNAMVTAYAH 280

Query: 461 SGRLKEALRLVQSM----PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
            G   E L +   M      +P+     ++L AC    ++   E V    I   G +   
Sbjct: 281 VGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLSACASLGSLSQGEWV-HVYIDKHGIEIEG 339

Query: 517 Y--TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           +  T L ++++  G  +K   V    + T  +  S  +S+  D  VH     D L   SE
Sbjct: 340 FLATALVDMYSKCGKIDKALEV---FRATSKRDVSTWNSIISDLSVHGLGK-DALEIFSE 395

Query: 575 QIYQ 578
            +Y+
Sbjct: 396 MVYE 399


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/572 (33%), Positives = 322/572 (56%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++  Q+I      + +    +++  A CRQ+  A K+F+ + + D+  +NT+I 
Sbjct: 162 DLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIA 221

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN    +A  + L MQ++G   D+ T   +L A        + + IH    + G+  
Sbjct: 222 GFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK 281

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + +  +L D YSKCG   V  A+ +F  M ++ +VSWNSM+ G V+ GE  +A  +F++
Sbjct: 282 LVNISTALADMYSKCG--SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEK 339

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGD 260
           M E       V+    L   A  G++     + + +   N+ S     ++++  YSK   
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +++A  +F+ +  +T V W  +I GYA+ G   EA   + +M+  G+KPD  T++S++ A
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            AE  +      +H  I +     N  V  ALVDMY+KCG++  A  +F+ ++ + +++W
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NAM+ G   HG G  AL LF +MK     P+  T++ V+ AC+H+G +D+G+++F SM++
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           DYG+ P ++HYG M+DLLGR+GR+KEA   +++MP+ P   ++G +LGAC+ H  +E+ E
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 639

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
           +    L  L   + G + +L+NI+A+T  W+KVA VR  M+K   +K  G S VE+ NEV
Sbjct: 640 KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEV 699

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F      HP+S++IY  +  L  ++K  G+
Sbjct: 700 HSFYSGSTTHPQSKRIYAFLEELVYEIKAAGY 731



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 160/590 (27%), Positives = 267/590 (45%), Gaps = 57/590 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C ++ +  Q+   +IK  L  +     KL+S  +    +  A +VF  I D    LY
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALY 115

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           +T+++   +NS    A      M+   V    + + +LLK C         + IH  +  
Sbjct: 116 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLIT 175

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG----EL 199
             +  ++F    +++ Y+KC    +  A K+F  M ERD+VSWN++IAG  + G     L
Sbjct: 176 NSFAANVFAMTGVVNMYAKCR--QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSWSTMVWG-Y 255
               R+ DE    D+++  T+L   A  G + +   +     +     +V+ ST +   Y
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           SK G +E A+L+FD M  KT+V W  ++ GY + G  ++A  ++++M E G+ P   T++
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L ACA+ G L  G  VH  +++     + +V N+L+ MY+KC  +D A  +FN +  +
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT------HAGFI- 428
             VSWNAM+ G A +G+  +AL  FS MK  G  PD +T V V+ A        HA +I 
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473

Query: 429 --------DKGV-------------------QYFYSMERDYGILPQVEHYGCMIDLLGRS 461
                   DK +                   +  + M  D  ++     +  MID  G  
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT----WNAMIDGYGTH 529

Query: 462 GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--N 516
           G  + AL L   M    VEPN I + +++ AC     V+        + +  G +P   +
Sbjct: 530 GLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDH 589

Query: 517 YTMLSNIFAATGD----WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           Y  + ++    G     W+ + N+ +    T      GA  +  + EV E
Sbjct: 590 YGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 639


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 187/516 (36%), Positives = 280/516 (54%), Gaps = 42/516 (8%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
            Y  L+ AC       L + +HA      +   +F+ N L+D Y+KCG   +  A+ LF 
Sbjct: 89  VYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCG--SLVDAQMLFD 146

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
            MG RD+ SWN+MI G  K G L +AR+LFDEMP+RD  SWN  + GY    +   A EL
Sbjct: 147 EMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALEL 206

Query: 237 FE-----------------------KIP-----------------HRNIVSWSTMVWGYS 256
           F                         IP                 + + V WS ++  Y 
Sbjct: 207 FRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYG 266

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K G ++ A+ +FD+M  + +V WT +I    E G  +E   L+  + ++G++P++ T   
Sbjct: 267 KCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAG 326

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L ACA+     LG +VH  +    +   +   +ALV MY+KCG+   A  VFN M + D
Sbjct: 327 VLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPD 386

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           LVSW +++ G A +GQ ++AL  F  +   G  PD+ T+VGVL ACTHAG +DKG++YF+
Sbjct: 387 LVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFH 446

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           S++  +G++   +HY C+IDLL RSGR KEA  ++ +MPV+P+  +W +LLG CR H  +
Sbjct: 447 SIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNL 506

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ELA+     L  ++  +P  Y  L+NI+A  G W++VANVR  M      K  G S +E+
Sbjct: 507 ELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEI 566

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             +VH F V D  HPK+  I++ +  L K +K  G+
Sbjct: 567 KRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGY 602



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 168/398 (42%), Gaps = 52/398 (13%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++   +I+ +L  D  +   L+     C  +  A  +F+ ++D DV  + T+I  C ++
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFED 299

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               + F +F D+ + GV  + +T+  +L AC      HL + +H  +   GY    F  
Sbjct: 300 GRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAI 359

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           ++L+  YSKCG     +A+++F  M + D+VSW S+I G  + G+  EA   F+ + +  
Sbjct: 360 SALVHMYSKCG--NTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSG 417

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
              D V++  +L     AG ++   E F  I                K G M  A     
Sbjct: 418 TKPDQVTYVGVLSACTHAGLVDKGLEYFHSIK--------------EKHGLMHTAD---- 459

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
                    +  +I   A  G  KEA  + D M    +KPD     S+L  C   G L L
Sbjct: 460 --------HYACVIDLLARSGRFKEAENIIDNMP---VKPDKFLWASLLGGCRIHGNLEL 508

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-----GMTKKDLVSW---- 380
             +   ++ +   + N      L ++YA  G      +V       G+ KK   SW    
Sbjct: 509 AKRAAKALYEIEPE-NPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIK 567

Query: 381 ---NAMLYGLAMHGQG---EKALGLFS-RMKDEGFGPD 411
              +  L G   H +     + LG  S ++K+EG+ PD
Sbjct: 568 RQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPD 605



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/323 (24%), Positives = 122/323 (37%), Gaps = 81/323 (25%)

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           ++   KEA  L  + +    +P      +++AAC     L LG +VHA      F     
Sbjct: 67  QQKRVKEAVELLHRTDH---RPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVF 123

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           + N L+DMYAKCGSL +A  +F+ M  +DL SWN M+ G A  G+ E+A  LF  M    
Sbjct: 124 ISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR- 182

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-------------------------- 441
              D +++   +          + ++ F  M+R                           
Sbjct: 183 ---DNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLG 239

Query: 442 ---YGILPQVEH------YGCMIDLLGRSGRLKEALRLVQSMP----------------- 475
              +G L + E       +  ++DL G+ G L EA  +   M                  
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFED 299

Query: 476 -----------------VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
                            V PN   +  +L AC  H A  L +EV   ++   G DPG++ 
Sbjct: 300 GRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMH-AGYDPGSFA 358

Query: 519 MLSNIFAATGDWNKVANVRLQMK 541
               I A    ++K  N R+  +
Sbjct: 359 ----ISALVHMYSKCGNTRVARR 377



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           +D+L +  R+KEA+ L+      P+A ++ TL+ AC +H A+EL   V
Sbjct: 62  VDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRV 109


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 206/637 (32%), Positives = 332/637 (52%), Gaps = 79/637 (12%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
            +++ A+IIK     + +I  +L+ +   C     A KVF+ +   +   YN ++    +
Sbjct: 38  ARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTK 97

Query: 93  NSLNAQAFRVF-------------------------------LDMQEKGVFTDNFTYPFL 121
                +AF VF                               +DM  +    + +++   
Sbjct: 98  FGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSA 157

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L AC G    ++   IHALI K  Y  D+++ ++L+D YSKCGV  V+ A++ F  M  R
Sbjct: 158 LSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCGV--VACAQRAFDGMAVR 215

Query: 182 DIVSWNSMIAGLVKGGELSEARRLF----DEMPERDAV----------SW---------- 217
           +IVSWNS+I    + G   +A  +F    D   E D +          SW          
Sbjct: 216 NIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVSACASWSAIREGLQIH 275

Query: 218 ----------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
                           N ++D YAK   +N A  +F+++P RN+VS ++MV GY++   +
Sbjct: 276 ARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASV 335

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+L+F  M  K +V W  +I+GY + G  +EA RL+  ++   + P   T  ++L AC
Sbjct: 336 KAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNAC 395

Query: 322 AESGLLGLGMKVHASINKYRF------KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           A    L LG + H  I K+ F      + +  V N+L+DMY KCG +++   VF  M ++
Sbjct: 396 ANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVER 455

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+VSWNAM+ G A +G G  AL +F +M   G  PD  T +GVL AC+HAG +++G +YF
Sbjct: 456 DVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYF 515

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
           +SM  + G+ P  +H+ CM+DLLGR+G L EA  L+Q+MP++P+ ++WG+LL AC+ H  
Sbjct: 516 HSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGN 575

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +EL + V + L+ +   + G Y +LSN++A  G W  V  VR QM++    K  G S +E
Sbjct: 576 IELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIE 635

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           + + VH F V D+ HP  + I+ ++  L + +K  G+
Sbjct: 636 IQSRVHVFMVKDKRHPLKKDIHLVLKFLTEQMKWAGY 672



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 226/496 (45%), Gaps = 88/496 (17%)

Query: 112 FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171
           F D+  +  LL +C         + IHA I K  +  +IF+ N L+D+Y KCG      A
Sbjct: 16  FLDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGY--FEDA 73

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
           +K+F  M +R+  S+N++++ L K G+L EA  +F  MPE D  SWN ++ G+A+     
Sbjct: 74  RKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFE 133

Query: 232 LAFELFEKIPHRNIV---------------------------------------SWSTMV 252
            A   F  +   + V                                         S +V
Sbjct: 134 EALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALV 193

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             YSK G +  A+  FD M  + +V W  +I+ Y + G A +A  ++  M + G++PD+ 
Sbjct: 194 DMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEI 253

Query: 313 TLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFN- 370
           TL S+++ACA    +  G+++HA + K  +++ +  + NALVDMYAKC  ++ A  VF+ 
Sbjct: 254 TLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDR 313

Query: 371 ------------------------------GMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
                                          M +K++VSWNA++ G   +G+ E+A+ LF
Sbjct: 314 MPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLF 373

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER-----DYGILPQVEHYGCMI 455
             +K E   P  YTF  +L AC +   +  G Q    + +       G    +     +I
Sbjct: 374 LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLI 433

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIRLKG 511
           D+  + G +++   + + M VE + + W  ++    ++    NA+E+  ++L     + G
Sbjct: 434 DMYMKCGMVEDGCLVFERM-VERDVVSWNAMIVGYAQNGYGTNALEIFRKML-----VSG 487

Query: 512 SDPGNYTMLSNIFAAT 527
             P + TM+  + A +
Sbjct: 488 QKPDHVTMIGVLSACS 503


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 194/548 (35%), Positives = 313/548 (57%), Gaps = 12/548 (2%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           QR+      +IS       +  A KVF+ + + +V  + +++R  VQ  +  +A ++F +
Sbjct: 80  QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWE 139

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  + V +       LLK     +   L  MI           D+ V  ++I  Y  C V
Sbjct: 140 MPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPE--------KDVVVVTNMIGGY--CQV 189

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
             +  A++LF  M  R++ +W +M++G  K G +  AR+LF+ MPER+ VSW  +L GY 
Sbjct: 190 GRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYT 249

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           ++G M  AFELFE +P + IV+ + M+  +   G+M  A+++F+ M  +    W  +I  
Sbjct: 250 QSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKV 309

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           +  KG+  EA  L+ +M+  G+  +  ++IS+L+ CA    L  G +VHA + +  F  +
Sbjct: 310 FERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQD 369

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V + L+ MY KCG L  A  +FN    KD+V WN+M+ G + HG GE+AL +F  M  
Sbjct: 370 LYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCS 429

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
            G  PD+ TF+GVL AC+++G + +G + F +M+  Y + P +EHY CM+DLLGR+GR+ 
Sbjct: 430 SGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVD 489

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           EA+ LV+ MP+EP+AI+WG LLGACR H  ++LAE  ++ L +L+  + G Y +LS+++A
Sbjct: 490 EAMELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYA 549

Query: 526 ATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD-QLHPKSEQIYQMINTLG 584
             G W  V  +R ++ + R  K  G S +EV+ +VH F+  D + HP+   I QM+  L 
Sbjct: 550 TKGRWRDVEVLRKKINR-RVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLS 608

Query: 585 KDLKPVGH 592
             L+  G+
Sbjct: 609 GFLREAGY 616



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 182/368 (49%), Gaps = 40/368 (10%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
            S I  Y + G   +  A+K+F    + +R I SWN+M++   +  +  +A  LFD+MP+
Sbjct: 23  TSAISRYGRIG--DIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQMPQ 80

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           R+ VS+N ++ GY K G +  A ++F+ +P RN+VSW++MV GY ++G +E A+ LF  M
Sbjct: 81  RNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM 140

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P + +V WT++I G  ++    +A +L+D + E     D   + +++    + G L    
Sbjct: 141 PRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPE----KDVVVVTNMIGGYCQVGRLDEAR 196

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++   + K R   N      +V  YAK G +D A  +F  M +++ VSW AML G    G
Sbjct: 197 ELFDEM-KVR---NVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSG 252

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-------AGFIDKGVQYFYSM-ERDYG 443
           + ++A  LF  M      P K+     + AC         AG + +    F  M ERD G
Sbjct: 253 RMKEAFELFEAM------PVKW-----IVACNEMILQFGLAGEMHRARMMFEGMKERDEG 301

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL---LGACRKHNAVELAE 500
                  +  MI +  R G   EAL L   M  E  A+ + ++   L  C    +++   
Sbjct: 302 T------WNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGR 355

Query: 501 EVLDCLIR 508
           +V   L+R
Sbjct: 356 QVHARLVR 363



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/269 (21%), Positives = 125/269 (46%), Gaps = 20/269 (7%)

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR--MPAKTLVPWTIIISGYAEKGMAKEAAR 297
           +  R++ S ++ +  Y + GD+  A+ +FD   +P +T+  W  ++S Y E    ++A  
Sbjct: 14  VQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALL 73

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+DQM +      +G    +++   ++G++    KV   + +     N     ++V  Y 
Sbjct: 74  LFDQMPQRNTVSFNG----MISGYVKNGMVADARKVFDVMPER----NVVSWTSMVRGYV 125

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           + G ++ A  +F  M ++++VSW  M+ GL    + + A  LF  + ++    D      
Sbjct: 126 QEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEK----DVVVVTN 181

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           ++      G +D+  + F  M+     +  V  +  M+    ++GR+  A +L + MP E
Sbjct: 182 MIGGYCQVGRLDEARELFDEMK-----VRNVFTWTTMVSGYAKNGRVDVARKLFEVMP-E 235

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            N + W  +L    +   ++ A E+ + +
Sbjct: 236 RNEVSWTAMLMGYTQSGRMKEAFELFEAM 264



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 41/217 (18%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  +Q+ A++++ +  +D Y+A  LI+    C  +  A  +FN     DV ++N++I 
Sbjct: 350 SLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMIT 409

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN----GKNWFHLVQMIHALIYKC 144
              Q+ L  +A  VF DM   GV  D  T+  +L AC+     K  F + + +     KC
Sbjct: 410 GYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAM-----KC 464

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
            Y                                 E  I  +  M+  L + G + EA  
Sbjct: 465 TY-------------------------------QVEPGIEHYACMVDLLGRAGRVDEAME 493

Query: 205 LFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           L ++MP E DA+ W  +L       +++LA    EK+
Sbjct: 494 LVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKL 530


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 323/575 (56%), Gaps = 36/575 (6%)

Query: 22   QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
            Q + +C      +   A +IK    ++ Y+  + I++ +   ++ LA+     +Q P+V 
Sbjct: 785  QIIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVF 844

Query: 82   LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            +YN LI+  V  S   ++   ++ M    V   ++TY  L++A    + F   + + A I
Sbjct: 845  VYNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFASGFG--ESLQAHI 902

Query: 142  YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            +K G+   + +  +LI  YS                                   G + E
Sbjct: 903  WKFGFGFHVQIQTTLIGFYSA---------------------------------SGRIRE 929

Query: 202  ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
            AR++FDEMPERD V+W T++  Y +  +M+ A  L  ++P +N  +W+ ++ GY++ G++
Sbjct: 930  ARKVFDEMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNL 989

Query: 262  EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
            E+A+ LF++MP K ++ WT +I+GY+     +EA  ++ +M E G+ PD+ T+ ++++AC
Sbjct: 990  ELAESLFNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMMEEGIIPDEVTMSTVISAC 1049

Query: 322  AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            A  G+L +G +VH    +  F  +  + +ALVDMY+KCGSL+ A+ VF  + KK+L  WN
Sbjct: 1050 AHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWN 1109

Query: 382  AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            +++ GLA HG  ++AL +F++M+ E   P+  TFV V  ACTHAG +++G + + SM  D
Sbjct: 1110 SIIEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDD 1169

Query: 442  YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            Y I+  VEHYGCM+ L  ++G + EAL L+ SM  EPNA+IWG LL  CR H  +E+AE 
Sbjct: 1170 YSIVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFEPNAVIWGALLDGCRIHKNLEIAEI 1229

Query: 502  VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP-SGASSVEVDNEV 560
              + L+ L+  + G Y +L +++A    W  VA +R +M++   +K   G SS+ +D   
Sbjct: 1230 AFNKLMILEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRD 1289

Query: 561  HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
            H F+  D+ H  S+++  +++ + + +   G+  +
Sbjct: 1290 HLFAAADKSHSASDEVCLLLDEIYEQMGLAGYVQE 1324


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 309/579 (53%), Gaps = 61/579 (10%)

Query: 22  QNLH-----KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS--SLALCRQMGLAIKVFND 74
            NLH      C    + +QL A  +K  +   P+++ +L++  S      +G A  +F+ 
Sbjct: 16  HNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDR 75

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           IQ   +  +NT+I+  V+N  +     +F ++  +    DNFT P ++K C         
Sbjct: 76  IQRRSLIHWNTIIKCYVENQFSHDGIVLFHELVHE-YLPDNFTLPCVIKGCARLGVVQEG 134

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + IH L  K G+  D+FV  SL++ YSKCG                              
Sbjct: 135 KQIHGLALKIGFGSDVFVQGSLVNMYSKCG------------------------------ 164

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
              E+  AR++FD M ++D V WN+++DG                    N+VSW+ M+ G
Sbjct: 165 ---EIDCARKVFDGMIDKDVVLWNSLIDG--------------------NLVSWNAMING 201

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K GD + A  LF +MP   LV W ++I+GY   G   +A +++  M + G +P   TL
Sbjct: 202 YMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATL 261

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S+L+A +   +LG G  +H+ + K  F+ +  +  +L++MYAKCG +++A++VF  + K
Sbjct: 262 VSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQK 321

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K +  W A++ GL +HG    AL LF  M   G  P+   F+GVL AC HAG +D G QY
Sbjct: 322 KKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQY 381

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M  +Y I P +EHYGC++D+L R+G L+EA   +++MP+ PN +IW +LLG  R H 
Sbjct: 382 FDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHG 441

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +++ E     +I +     G Y +LSN++AA+G W KV++VR  M K   +K  G SSV
Sbjct: 442 KIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSV 501

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           E    +HEF V D  HP++++IY  ++ + + LK VGH 
Sbjct: 502 EHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHV 540


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 197/573 (34%), Positives = 317/573 (55%), Gaps = 10/573 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL   + + +  I++  + D +I+  L+   + C   G A+KVF  I+DPDV  ++ +I 
Sbjct: 345 NLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIIT 404

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q   + +A  VF  M+  GV  + FT   L+ A       +  + IHA + K G+  
Sbjct: 405 CLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEY 464

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D  V N+L+  Y K G   V    ++F +   RD++SWN++++G           R+F++
Sbjct: 465 DNTVCNALVTMYMKIG--SVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQ 522

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGD 260
           M       +  ++ +IL   +   +++L  ++  +I       N    + +V  Y+K+  
Sbjct: 523 MLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF 582

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E A+ +F+R+  + L  WT+I++GYA+ G  ++A + + QM+  G+KP++ TL S L+ 
Sbjct: 583 LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSG 642

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C+    L  G ++H+   K     +  V +ALVDMYAKCG +++A  VF+G+  +D VSW
Sbjct: 643 CSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSW 702

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++ G + HGQG KAL  F  M DEG  PD+ TF+GVL AC+H G I++G ++F S+ +
Sbjct: 703 NTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSK 762

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            YGI P +EHY CM+D+LGR+G+  E    ++ M +  N +IW T+LGAC+ H  +E  E
Sbjct: 763 IYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGE 822

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L  L+     NY +LSN+FAA G W+ V NVR  M     +K  G S VEV+ +V
Sbjct: 823 RAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQV 882

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           H F   D  HPK  +I+  +  L + L  VG+ 
Sbjct: 883 HVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYT 915



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 149/508 (29%), Positives = 266/508 (52%), Gaps = 23/508 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +LN+ K +  Q+IK  +  D ++   L++  A C     A KVF +I + DV  +  LI 
Sbjct: 143 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALIT 202

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V     + A  +F +M+ +GV  + FTY   LKAC+        + +HA   K G F 
Sbjct: 203 GFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFS 262

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+FV ++L+D Y+KCG   + LA+++F+ M +++ VSWN+++ G  + G+  +   LF  
Sbjct: 263 DLFVGSALVDLYAKCG--EMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCR 320

Query: 209 MPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHR------NIVSWSTMVWGYSKD 258
           M   +      + +T+L G A +G +  A ++   +  R        +S   +V  YSK 
Sbjct: 321 MTGSEINFSKFTLSTVLKGCANSGNLR-AGQIVHSLAIRIGCELDEFIS-CCLVDMYSKC 378

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G    A  +F R+    +V W+ II+   +KG ++EAA ++ +M  +G+ P+  TL S++
Sbjct: 379 GLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLV 438

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +A  + G L  G  +HA + KY F+ +  VCNALV MY K GS+ +   VF   T +DL+
Sbjct: 439 SAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLI 498

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWNA+L G   +   +  L +F++M  EGF P+ YTF+ +L +C+    +D G Q    +
Sbjct: 499 SWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI 558

Query: 439 ERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
            ++   L   +  G  ++D+  ++  L++A  +   + ++ +   W  ++    +     
Sbjct: 559 VKNS--LDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAGYAQDGQ-- 613

Query: 498 LAEEVLDCLIRLK--GSDPGNYTMLSNI 523
             E+ + C I+++  G  P  +T+ S++
Sbjct: 614 -GEKAVKCFIQMQREGVKPNEFTLASSL 640



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 144/520 (27%), Positives = 244/520 (46%), Gaps = 23/520 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+    C +L   KQ+ A+ IK+    D ++   L+   A C +M LA +VF  +   + 
Sbjct: 236 LKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNA 295

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N L+    Q     +   +F  M    +    FT   +LK C         Q++H+L
Sbjct: 296 VSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSL 355

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             + G   D F+   L+D YSKCG+ G +L  K+F+ + + D+VSW+++I  L + G+  
Sbjct: 356 AIRIGCELDEFISCCLVDMYSKCGLAGDAL--KVFVRIEDPDVVSWSAIITCLDQKGQSR 413

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKA---------GEMNLAFELFEKIPHRNIVSWSTM 251
           EA  +F  M     +     L     A         GE   A        + N V  + +
Sbjct: 414 EAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVC-NAL 472

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y K G ++    +F+    + L+ W  ++SG+ +        R+++QM   G  P+ 
Sbjct: 473 VTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNM 532

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T ISIL +C+    + LG +VHA I K     N  V  ALVDMYAK   L++A ++FN 
Sbjct: 533 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 592

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           + K+DL +W  ++ G A  GQGEKA+  F +M+ EG  P+++T    L  C+    +D G
Sbjct: 593 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSG 652

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
            Q  +SM    G    +     ++D+  + G +++A  +   + V  + + W T++    
Sbjct: 653 RQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGL-VSRDTVSWNTIICGYS 710

Query: 492 KH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +H     A++  E +LD     +G+ P   T +  + A +
Sbjct: 711 QHGQGGKALKAFEAMLD-----EGTVPDEVTFIGVLSACS 745



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 120/427 (28%), Positives = 206/427 (48%), Gaps = 18/427 (4%)

Query: 104 LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
           LD   KG       Y  +L+ C  K   +  + IH  + K G   D  + NSL++ Y+KC
Sbjct: 120 LDFDSKGRLRQ---YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKC 176

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
           G    + A K+F  + ERD+VSW ++I G V  G  S A  LF EM  R+ V  N     
Sbjct: 177 G--SANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEM-RREGVEANEFTYA 233

Query: 224 YA-KAGEMNLAFELFEKI--------PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
            A KA  M L  E  +++           ++   S +V  Y+K G+M +A+ +F  MP +
Sbjct: 234 TALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ 293

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
             V W  +++G+A+ G A++   L+ +M  + +     TL ++L  CA SG L  G  VH
Sbjct: 294 NAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVH 353

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
           +   +   + +  +   LVDMY+KCG   +A+ VF  +   D+VSW+A++  L   GQ  
Sbjct: 354 SLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSR 413

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +A  +F RM+  G  P+++T   ++ A T  G +  G +  ++    YG          +
Sbjct: 414 EAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYG-ESIHACVCKYGFEYDNTVCNAL 472

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           + +  + G +++  R+ ++     + I W  LL     +   +    + + ++  +G +P
Sbjct: 473 VTMYMKIGSVQDGCRVFEA-TTNRDLISWNALLSGFHDNETCDTGLRIFNQML-AEGFNP 530

Query: 515 GNYTMLS 521
             YT +S
Sbjct: 531 NMYTFIS 537



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 139/280 (49%), Gaps = 3/280 (1%)

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W+++V  Y+K G    A  +F  +P + +V WT +I+G+  +G    A  L+ +M   G+
Sbjct: 166 WNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGV 225

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           + ++ T  + L AC+    L  G +VHA   K     +  V +ALVD+YAKCG +  A  
Sbjct: 226 EANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAER 285

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF  M K++ VSWNA+L G A  G  EK L LF RM        K+T   VL  C ++G 
Sbjct: 286 VFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGN 345

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +  G Q  +S+    G         C++D+  + G   +AL++   +  +P+ + W  ++
Sbjct: 346 LRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIE-DPDVVSWSAII 403

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
               +      A EV    +R  G  P  +T+ S + AAT
Sbjct: 404 TCLDQKGQSREAAEVFK-RMRHSGVIPNQFTLASLVSAAT 442



 Score = 45.4 bits (106), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L   L    +   L+  +QL +  IK     D ++A  L+   A C  +  A  VF+ + 
Sbjct: 636 LASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV 695

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKN 129
             D   +NT+I    Q+    +A + F  M ++G   D  T+  +L AC+       GK 
Sbjct: 696 SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 755

Query: 130 WFHLVQMIHAL 140
            F+ +  I+ +
Sbjct: 756 HFNSLSKIYGI 766


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 325/582 (55%), Gaps = 41/582 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L KCK+L + +Q+ AQ+IK +L    +   +LI+  +L    G    A  VF+ IQ P+ 
Sbjct: 13  LDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNS 72

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD--NFTYPFLLKACNGKNWFHLVQMIH 138
            ++  LI+     S   ++  ++  M     ++    F+ P +LKAC     F   + +H
Sbjct: 73  FIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVH 132

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             + K   + D FV NS++  Y                                 +  GE
Sbjct: 133 GQVLKTHLWFDPFVGNSMVRMY---------------------------------IDFGE 159

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
           +  ARR+FD MP RD VSWN+++ GY KAGE+ LA ELF+++P R++VS + M+ GY K 
Sbjct: 160 IELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKC 219

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G  E+A+ +F+ M  K +V WT +IS Y +     +A  L+ +M   GL+PD   ++S+L
Sbjct: 220 GRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVL 279

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMT-KKD 376
           +A A+ G +  G  +HA ++  + + ++  + +AL+DMY+KCG ++NA  VF  ++ +++
Sbjct: 280 SAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRN 339

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +  WN+M+ GLA+HG   +AL +F  M+     P++ TF+G+L  C+H G +++G  YF 
Sbjct: 340 IGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFE 399

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM   Y I+P+++HYGCMIDL GR+GRL++AL ++Q+MP E + + W  +L A  KH  +
Sbjct: 400 SMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHI 459

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           E+ +      I L   D  +Y +LSNI+A  G W+ VA +RL M++   +K +G SS+ V
Sbjct: 460 EIGKSAALRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLV 519

Query: 557 DNEVHEFSVCDQLHPK-SEQIYQMINTLGKDLKPVGHAAKLS 597
           B +VHEF    +L    S Q+   I  +   LK  G+   L+
Sbjct: 520 BGKVHEFLXGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLT 561


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 203/572 (35%), Positives = 317/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +LN+ KQL + ++K  +  D  I   L+     C  +  A+++F      +V L+N ++ 
Sbjct: 259 DLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLV 318

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q S  A++F +F  M   GV  + FTYP LL+ C      +L + IH L  K G+  
Sbjct: 319 AYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFES 378

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK G   +  A+++   +  +D+VSW SMIAG V+     EA   F +
Sbjct: 379 DMYVSGVLIDMYSKYG--WLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKD 436

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGD 260
           M        N  L     A     A    ++I  R  VS        W+ +V  Y++ G 
Sbjct: 437 MQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGR 496

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            + A  LF+ +  K  + W  ++SG+A+ G+ +EA  ++ +M +AG+K +  T +S ++A
Sbjct: 497 SKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISA 556

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G ++HA++ K      T V NAL+ +Y KCGS+++A   F  M++++ VSW
Sbjct: 557 SANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSW 616

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG G +AL LF +MK EG  P+  TF+GVL AC+H G +++G+ YF SM  
Sbjct: 617 NTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSS 676

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           ++GI P+ +HY C++D+LGR+G+L  A + V+ MPV  NA++W TLL ACR H  +E+ E
Sbjct: 677 EHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGE 736

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A TG W    +VR  MK    +K  G S +EV N V
Sbjct: 737 LAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVV 796

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP + QIY+ +  L   L  +G+
Sbjct: 797 HAFFVGDRLHPLAHQIYKYLADLDDRLAKIGY 828



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 141/526 (26%), Positives = 249/526 (47%), Gaps = 25/526 (4%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L    K     Q + + AQ+ K     +  +   LI+       + LA +VF+++
Sbjct: 145 VLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEM 204

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q      A  +F +M+  G   D  T   LL AC      +  +
Sbjct: 205 PYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGK 264

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H+ + K G   D  +  SL+D Y KCGV+  +L  ++F S    ++V WN M+    +
Sbjct: 265 QLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEAL--EIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 196 GGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFEL--------FEKIPHR 243
             +L+++  LF +M       +  ++  +L     AGE+NL  ++        FE     
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFES---- 378

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           ++     ++  YSK G ++ A+ + + + AK +V WT +I+GY +    KEA   +  M+
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQ 438

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
             G+ PD+  L S ++ACA    +  G ++H+ +    +  + ++ NALV++YA+CG   
Sbjct: 439 LFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSK 498

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
            A S+F  +  KD ++WN M+ G A  G  E+AL +F +M   G   + +TFV  + A  
Sbjct: 499 EAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASA 558

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
           +   I +G Q   ++ +  G   + E    +I L G+ G +++A      M  E N + W
Sbjct: 559 NLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMS-ERNHVSW 616

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
            T++ +C +H       E LD   ++K  G  P + T +  + A +
Sbjct: 617 NTIITSCSQHG---WGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 659



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/419 (28%), Positives = 205/419 (48%), Gaps = 20/419 (4%)

Query: 122 LKACNG--KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           L+ C G  K+W  LV +IHA    CG   D    N LID Y+K G+  V  A+++F  + 
Sbjct: 48  LRECRGSVKHW-PLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGL--VQRARRVFEQLS 104

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFE---- 235
            RD VSW +M++G  + G   EA  L+ +M     V    +L     A      FE    
Sbjct: 105 ARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRL 164

Query: 236 ----LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
               ++++      V  + ++  Y + G + +A+ +F  MP    V +  +IS +A+ G 
Sbjct: 165 VHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGN 224

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
            + A  ++++M  +G  PD  T+ S+LAACA  G L  G ++H+ + K     +  +  +
Sbjct: 225 GESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGS 284

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+D+Y KCG +  A+ +F    + ++V WN ML          K+  LF +M   G  P+
Sbjct: 285 LLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPN 344

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           ++T+  +L  CT+AG I+ G Q  + +    G    +   G +ID+  + G L +A R++
Sbjct: 345 EFTYPCLLRTCTYAGEINLGEQ-IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRIL 403

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL--IRLKGSDPGNYTMLSNIFAATG 528
           + +  + + + W +++    +H   E  +E L+    ++L G  P N  + S I A  G
Sbjct: 404 EVLEAK-DVVSWTSMIAGYVQH---EFCKEALETFKDMQLFGIWPDNIGLASAISACAG 458



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 140/557 (25%), Positives = 248/557 (44%), Gaps = 25/557 (4%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           + A+ I   L  D      LI   A    +  A +VF  +   D   +  ++    +N L
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
             +A  ++  M   GV    +    +L AC     F   +++HA +YK G   +  V N+
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNA 183

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----E 211
           LI  Y + G   +SLA+++F  M   D V++N++I+   + G    A  +F+EM      
Sbjct: 184 LIALYLRFG--SLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT 241

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLL 267
            D V+  ++L   A  G++N   +L   +    +    +   +++  Y K G +  A  +
Sbjct: 242 PDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEI 301

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F       +V W +++  Y +     ++  L+ QM  AG++P++ T   +L  C  +G +
Sbjct: 302 FKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++H    K  F+ +  V   L+DMY+K G LD A  +   +  KD+VSW +M+ G 
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
             H   ++AL  F  M+  G  PD       + AC     + +G Q  +S     G    
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQG-QQIHSRVYVSGYSAD 480

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           V  +  +++L  R GR KEA  L +++    + I W  ++    +     L EE L+  I
Sbjct: 481 VSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMVSGFAQSG---LYEEALEVFI 536

Query: 508 RL--KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ--KPSGASSVEVDNE-VHE 562
           ++   G     +T +S+I A+      +A+++ Q K+  A   K    S  EV N  +  
Sbjct: 537 KMYQAGVKYNVFTFVSSISASA----NLADIK-QGKQIHATVIKTGCTSETEVANALISL 591

Query: 563 FSVCDQLHPKSEQIYQM 579
           +  C  +     Q ++M
Sbjct: 592 YGKCGSIEDAKMQFFEM 608


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 194/568 (34%), Positives = 314/568 (55%), Gaps = 71/568 (12%)

Query: 29  NLNQTKQLFAQIIKLDL---QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           ++++  Q+ A I++ +L    R P +  KL  + A   ++  ++ +F+   DPD+ L+  
Sbjct: 39  SVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 98

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
            I     N L  QAF +++ +    +  + FT+  +LK+C+ K+     ++IH  + K G
Sbjct: 99  AINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSG----KLIHTHVLKFG 154

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D +V   L+D Y+K                                 GG++  A+++
Sbjct: 155 LGLDPYVATGLVDIYAK---------------------------------GGDVVSAQKV 181

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD MPER  VS   ++  YAK G +  A  LF+++  R+IVSW+ M+ GYS+ G    A 
Sbjct: 182 FDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDAL 241

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           +LF ++ A                              +   KPD+ T+++ L+AC++ G
Sbjct: 242 MLFQKLLA------------------------------DGKPKPDEITVVAALSACSQIG 271

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G  +H  +N  R + N  VC AL+DMY+KCGSL+ A+ VFN   +KD+V+WNAM+ 
Sbjct: 272 ALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIT 331

Query: 386 GLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
           G AMHG  + AL LF  M+   G  P   TF+G L AC HAG +++G+Q F SM ++YGI
Sbjct: 332 GYAMHGYSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGI 391

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P++EHYGC++ LLGR+G+LK A  ++++M +E ++++W ++LG+C+ H    L +E+ +
Sbjct: 392 KPKIEHYGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAE 451

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            LI    S+ G Y +LSNI+A  GD+  VA VR  MK+    K  G S++E+DN+VHEF 
Sbjct: 452 YLIGQNISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFR 511

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             D+ H KS++IY M+  + + +K  G+
Sbjct: 512 AGDREHLKSKEIYTMLRKMSERIKSHGY 539


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  356 bits (913), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 202/574 (35%), Positives = 308/574 (53%), Gaps = 75/574 (13%)

Query: 55  LISSLALCRQ-MGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVF 112
           LIS L+L RQ +  A      I   P V  + +L+R  V++ L A A R+F  M E+   
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER--- 141

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            ++ +Y  LL                                 L+D+        V+ A+
Sbjct: 142 -NHVSYTVLL-------------------------------GGLLDAGR------VNEAR 163

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           +LF  M +RD+V+W +M++G  + G ++EAR LFDEMP+R+ VSW  ++ GYA+ GE+NL
Sbjct: 164 RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNL 223

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LFE +P RN VSW+ M+ GY + G +E A  LF+ MP   +     ++ G+ ++GM 
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283

Query: 293 KEAARLYDQMEEA-------------------------------GLKPDDGTLISILAAC 321
             A  ++++M E                                G++P+  ++ISIL  C
Sbjct: 284 DAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A   +L  G +VHA++ +  F  +    +AL+ MY KCG+LD A  VF+    KD+V WN
Sbjct: 344 AALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWN 403

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G A HG GE+ALG+F  M+  G  PD  T++G L AC++ G + +G + F SM  +
Sbjct: 404 SMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
             I P  EHY CM+DLLGRSG ++EA  L+++MPVEP+A+IWG L+GACR H   E+AE 
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEV 523

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L+ L+  + G Y +LS+I+ + G W   + +R  +      K  G S +E D  VH
Sbjct: 524 AAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVH 583

Query: 562 EFSVCDQL-HPKSEQIYQMINTLGKDLKPVGHAA 594
            F+  D L HP+   I +++  L   L   G++A
Sbjct: 584 LFTSGDVLAHPEHAAILRILEKLDGLLMESGYSA 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 186/441 (42%), Gaps = 83/441 (18%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+ I   ++ G   +  A+  F +M  R   S+N+++AG  +      A  LF  MP RD
Sbjct: 21  NARIAHLARAG--NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD 78

Query: 214 AVSWN---------------------------------TILDGYAKAGEMNLAFELFEKI 240
             S+N                                 ++L GY + G +  A  LF+++
Sbjct: 79  LASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 241 PHRN-------------------------------IVSWSTMVWGYSKDGDMEMAKLLFD 269
           P RN                               +V+W+ M+ GY + G +  A+ LFD
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            MP + +V WT +ISGYA+ G    A +L++ M E     ++ +  ++L    ++G +  
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVED 254

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             ++  ++ ++        CNA++  + + G +D A +VF  M ++D  +W+AM+     
Sbjct: 255 AAELFNAMPEH----PVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQ 310

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +    +AL  F  M   G  P+  + + +L  C     +D G +   +M R    +  V 
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM-DVF 369

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII-WGTLLGACRKHNAVELAEEVLDCL-- 506
               +I +  + G L +A R+  +   EP  I+ W +++    +H    L E+ L     
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHG---LGEQALGIFHD 424

Query: 507 IRLKGSDPGNYTMLSNIFAAT 527
           +RL G  P   T +  + A +
Sbjct: 425 MRLAGMSPDGITYIGALTACS 445



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++ A +++     D +    LI+    C  +  A +VF+  +  D+ ++N++I  
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
             Q+ L  QA  +F DM+  G+  D  TY   L AC+
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACS 445


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 200/512 (39%), Positives = 283/512 (55%), Gaps = 48/512 (9%)

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
           G N    ++ +HA + + G   D ++ N ++      G    + + ++F    E +I  +
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFG--NTNYSHRIFHQTKEPNIFLF 76

Query: 187 NSMIAGLVKGGELSEARRLFDEMP------------------------------------ 210
           N+MI GLV      E+  ++  M                                     
Sbjct: 77  NTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVK 136

Query: 211 ---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG------DM 261
              E DA    +++  Y K G ++ AF++F+ IP +N+ +W+ ++ GY   G      DM
Sbjct: 137 AGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDM 196

Query: 262 -EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
              A  +FD M  K +V W+ +I GYA  G+ KEA  L+ +M   G +PD   ++ +L A
Sbjct: 197 FRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCA 256

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA  G L LG      +++  F  N  +  AL+DMYAKCG +D+A  VF GM KKD+V W
Sbjct: 257 CARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVW 316

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA + GLAM G  + A GLF +M+  G  PD  TFVG+LCACTHAG +D+G QYF SMER
Sbjct: 317 NAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMER 376

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            + + P++EHYGCM+DLLGR+G L EA +LV+SMP+E NAI+WG LLG CR H   +L E
Sbjct: 377 VFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVE 436

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            VL  LI L+ S+ GNY +LSNI++A+  W   A +R  M +   +K  G S +EVD  V
Sbjct: 437 GVLKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVV 496

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           HEF V D  HP SE+IY  +  L KDLK  G+
Sbjct: 497 HEFLVGDTSHPLSEKIYAKLGELVKDLKASGY 528



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 205/432 (47%), Gaps = 50/432 (11%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           K++      +L   K + A +++L L  D Y+  K++           + ++F+  ++P+
Sbjct: 13  KIRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPN 72

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           + L+NT+I   V N    ++  ++  M+++G+  D+FT+PFLLKAC       L   +H 
Sbjct: 73  IFLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHG 132

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           L+ K G   D FV  SL+  Y KCG   +  A K+F  + E+++ +W ++I+G +  G+ 
Sbjct: 133 LVVKAGCESDAFVNTSLVSLYGKCGF--IDNAFKVFDDIPEKNVAAWTAIISGYIGVGKC 190

Query: 200 SEA----RR---LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--------- 243
            EA    RR   +FD M E+D VSW++++ GYA  G    A +LF K+ +          
Sbjct: 191 REAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAM 250

Query: 244 ------------------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
                                         N V  + ++  Y+K G M+ A  +F  M  
Sbjct: 251 VGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRK 310

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           K +V W   ISG A  G  K A  L+ QME++G++PD  T + +L AC  +GL+  G + 
Sbjct: 311 KDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQY 370

Query: 334 HASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHG 391
             S+ + +           +VD+  + G LD A  +   M  + + + W A+L G  +H 
Sbjct: 371 FNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHR 430

Query: 392 QGEKALGLFSRM 403
             +   G+  ++
Sbjct: 431 DTQLVEGVLKQL 442


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 171/415 (41%), Positives = 267/415 (64%), Gaps = 5/415 (1%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N+ I G    G +++ARR+FD MP RD VS+N+++ GYA +G++  A  LFE++     V
Sbjct: 50  NAFIQGYCSAGRVTDARRVFDGMPRRDTVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPV 109

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           +W++MV G+ + GD+E A+ +F+ MP + LV W  +ISG     +  EA  L+  M E G
Sbjct: 110 TWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEG 169

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
             P+ GT++S+L+AC  +G L  G  VH  + K R + +  +  ALVDMYAKCG+++ A+
Sbjct: 170 FVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELAL 229

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHA 425
            VF G+  ++  +WNAM+ GLAM+G   KAL +F +M+  G   PD+ TFVGVL AC+HA
Sbjct: 230 EVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHA 289

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           GF+D G ++FY++ + YG+   +EHY CM+DLL RSG L+EA +L+  MP++P+ ++W  
Sbjct: 290 GFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRA 349

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLG CR H  V++AE V+     ++ +  G++ +LSN++AA G WN V +VR  M+    
Sbjct: 350 LLGGCRLHKNVKMAENVIS---EMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGI 406

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           +K  G SSVE+D  +HEF   D+ HP  + I+  +  +G  ++  G+  + +AE+
Sbjct: 407 EKIPGCSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTE-TAEV 460



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 131/286 (45%), Gaps = 17/286 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++   ++LF ++    L   P     +++       +  A +VF ++ + D+  +N +I 
Sbjct: 92  DVGSAQRLFERV----LAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMIS 147

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            CV N L  +A  +F  M E+G   +  T   +L AC G       + +H  + K     
Sbjct: 148 GCVGNRLPVEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRW 207

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D F+  +L+D Y+KCG   V LA ++F  +  R+  +WN+MI GL   G  ++A  +F +
Sbjct: 208 DEFLGTALVDMYAKCG--AVELALEVFTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQ 265

Query: 209 MP-----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYSKD 258
           M        D V++  +L   + AG ++   E F  IP +  V      ++ MV   ++ 
Sbjct: 266 MELNGTVAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARS 325

Query: 259 GDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQME 303
           G ++ A  L   MP K  +V W  ++ G       K A  +  +ME
Sbjct: 326 GHLQEAHKLITEMPMKPDVVVWRALLGGCRLHKNVKMAENVISEME 371


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 203/608 (33%), Positives = 333/608 (54%), Gaps = 51/608 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQD-PDV 80
           L KC +  Q KQ+   +++ +L    +   +L+  S+++    + LAI +FN     P++
Sbjct: 38  LEKCNSRTQFKQILGHMMRNNLVGQTFPMSRLLFFSAVSHPENLELAILLFNHFTPYPNL 97

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           +++NT+I     +  N +AF ++  M + G + D  T+ +LL+      +   V+ IH  
Sbjct: 98  YIFNTMILGFPFS--NEKAFTIYRSMLQNGTYPDRQTFLYLLQT---TKFVAEVKQIHCH 152

Query: 141 IYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
               G    + ++ NSLI  Y   G      A++LF  M +R++VS+N+MI G  K G +
Sbjct: 153 ALVFGLLSKEEYLRNSLIKRYVDNGCF--ECARQLFDEMSDRNVVSYNTMILGFAKVGNI 210

Query: 200 SEARRLFDEMPER---------------------------------------DAVSWNTI 220
                LF +M                                          + + +N +
Sbjct: 211 LGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNAL 270

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           LD Y K  E+ LA ++F+    ++ VSW+T++ GY+K G++E+A  LF+++P + +V W 
Sbjct: 271 LDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWN 330

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +ISGYA+ G       L+ +M    +KPD  T++++++A AE G L  G  +H    K 
Sbjct: 331 SLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM 390

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             K      +AL+DMY KCGS++ A  +FN + +KD+ +W  M+ G A HG G KAL LF
Sbjct: 391 LTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFGNKALELF 450

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           S M+ E   P+  TFV VL AC+H+G +D+G++ F SM++ Y I P VEHYGC++DLL R
Sbjct: 451 SVMQAET-KPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCR 509

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           SGRL +A+ +++ MP+EP+  IWG +L ACR H  +ELAE  L  L++L+    G Y +L
Sbjct: 510 SGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEPEKEGGYILL 569

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SN++A  G W+   ++R  M     +K +G SSV VD  VH+F+  ++ HP+   I  ++
Sbjct: 570 SNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVDGMVHDFTASNKQHPRWMDICSIL 629

Query: 581 NTLGKDLK 588
           + L  +++
Sbjct: 630 SFLTNEMR 637


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 199/567 (35%), Positives = 302/567 (53%), Gaps = 10/567 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K+L +  +K     D  +    +   A C +M  A KV + +    +  YN +I    ++
Sbjct: 302 KELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARS 361

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               QA + F  + + G+  D  T    L AC         + +H L  K     +I V 
Sbjct: 362 DRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVA 421

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           N+++D Y KC    ++ A  LF  M  RD VSWN++IA   + G   E    F  M    
Sbjct: 422 NAILDMYGKCK--ALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSR 479

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAK 265
            E D  ++ ++L   A    +N   E+  +I    +       + +V  Y K G +E A 
Sbjct: 480 MEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKAD 539

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            + DR   KT+V W  IISG++    +++A + + +M E G+ PD+ T  ++L  CA   
Sbjct: 540 KIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLA 599

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            +GLG ++HA I K   + +  +C+ LVDMY+KCG++ ++  +F     +D V+WNAML 
Sbjct: 600 TVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLC 659

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G A HG GE+AL LF  M+     P+  TFV VL AC H G +DKG+ YF  M  +YG+ 
Sbjct: 660 GYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLD 719

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           PQ EHY CM+D+LGRSGR+ EAL LVQ MP E +A+IW  LL  C+ H  VE+AE+    
Sbjct: 720 PQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRA 779

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L++L   D     +LSNI+A  G W  V+ +R  M+  + +K  G S +E+ +EVH F V
Sbjct: 780 LLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKLKKEPGCSWIELKDEVHAFLV 839

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D+ HP+ E+IY+ +  L  +++ VG+
Sbjct: 840 GDKGHPRDEEIYEKLGVLIGEMQSVGY 866



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 229/505 (45%), Gaps = 54/505 (10%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T+  + + C+ +N  +  +  HA +  CG+    FV N L+  Y KC  + +  A K+F 
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKC--LYLDYACKVFD 108

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
            M  RD+VS+NS+I+G    GE+  AR+ F EMPERD VSWN+++ G+ + GE   + ++
Sbjct: 109 KMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDV 168

Query: 237 FEKIPHR---------------------------------------NIVSWSTMVWGYSK 257
           F ++                                          ++V+ S ++  Y+K
Sbjct: 169 FLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAK 228

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
              ++ +  +F  +P K  V W+ +I+G  +     E   L+ +M+  G+        S+
Sbjct: 229 CKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASL 288

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
             +CA    L LG ++H+   K  F  +  V  A +DMYAKCG + +A  V + M K  L
Sbjct: 289 FRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSL 348

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
            S+NA++ G A   +G +AL  F  +   G G D+ T  G L AC       +G Q  + 
Sbjct: 349 QSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQ-VHG 407

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           +      +  +     ++D+ G+   L EA  L   M    +A+ W  ++ AC ++   E
Sbjct: 408 LAVKSISMSNICVANAILDMYGKCKALAEASDLFDMME-RRDAVSWNAIIAACEQNGNEE 466

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS-------G 550
                   +I  +  +P ++T  S + A  G   +  N  +++  TR  K         G
Sbjct: 467 ETLAHFASMIHSR-MEPDDFTYGSVLKACAG--RQALNTGMEI-HTRIIKSGMGFDSFVG 522

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQ 575
           A+ V++  +       D++H ++EQ
Sbjct: 523 AALVDMYCKCGMIEKADKIHDRTEQ 547



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/519 (26%), Positives = 240/519 (46%), Gaps = 21/519 (4%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           PT F    L++  +    KC  L+   ++F ++      RD      +IS  A C +M +
Sbjct: 82  PTTFVSNCLMQMYI----KCLYLDYACKVFDKM----YLRDVVSYNSIISGYASCGEMDI 133

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K F ++ + DV  +N++I   +QN    ++  VFL+M   GV  D  +   +LKAC  
Sbjct: 134 ARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGA 193

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                +   +H L+ K G+  D+   ++L+  Y+KC  +  SL+  +F  + E++ VSW+
Sbjct: 194 LEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLS--VFSELPEKNWVSWS 251

Query: 188 SMIAGLVKGGELSEARRLFDEMPERD-AVS---WNTILDGYAKAGEMNLAFEL----FEK 239
           +MIAG V+     E   LF EM      VS   + ++    A    + L  EL     + 
Sbjct: 252 AMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCAALSALRLGKELHSHALKS 311

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
               +I+  +  +  Y+K G M  A+ +   MP  +L  +  II GYA      +A + +
Sbjct: 312 AFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSF 371

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             + + GL  D+ TL   L ACA       G +VH    K     N  V NA++DMY KC
Sbjct: 372 QLLLKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKC 431

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
            +L  A  +F+ M ++D VSWNA++     +G  E+ L  F+ M      PD +T+  VL
Sbjct: 432 KALAEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVL 491

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC     ++ G++    + +  G+         ++D+  + G +++A + +     +  
Sbjct: 492 KACAGRQALNTGMEIHTRIIKS-GMGFDSFVGAALVDMYCKCGMIEKADK-IHDRTEQKT 549

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            + W  ++         E A +    ++ + G +P N+T
Sbjct: 550 MVSWNAIISGFSLLQQSEDAHKFFSRMLEM-GVNPDNFT 587



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 145/317 (45%), Gaps = 29/317 (9%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR- 88
           LN   ++  +IIK  +  D ++   L+     C  +  A K+ +  +   +  +N +I  
Sbjct: 500 LNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 89  -ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            + +Q S +A  F  F  M E GV  DNFTY  +L  C       L + IHA I K    
Sbjct: 560 FSLLQQSEDAHKF--FSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQ 617

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+++ ++L+D YSKCG   +  ++ +F     RD V+WN+M+ G    G   EA +LF+
Sbjct: 618 SDVYICSTLVDMYSKCG--NMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFE 675

Query: 208 EMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKI-------PHRNIVSWSTMVWGYS 256
            M     + +  ++ ++L   A  G ++     F+ +       P      +S MV    
Sbjct: 676 SMQLVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSE--HYSCMVDILG 733

Query: 257 KDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKG---MAKEAARLYDQMEEAGLKPDDG 312
           + G ++ A  L  +MP +   V W  ++S     G   +A++A R   Q     L P D 
Sbjct: 734 RSGRIDEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQ-----LDPQDS 788

Query: 313 TLISILAAC-AESGLLG 328
           +   +L+   A++G+ G
Sbjct: 789 SACVLLSNIYADAGMWG 805


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 320/585 (54%), Gaps = 43/585 (7%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM--QEKGVF 112
           L+S+LA  R +     +F  +   D+  YN +I        +AQA RV+L +   +  V 
Sbjct: 78  LLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVR 137

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
               T   ++ A +      L +  H  I + G+  + FV + L+D Y+K  +VG   AK
Sbjct: 138 PSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGD--AK 195

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           + F  +  +++V +N+MI GL++   + EARRLF+ M +RD+++W T++ G+ + G  + 
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 233 AFELFEKIPHR---------------------------------------NIVSWSTMVW 253
           A E+F ++  +                                       N+   S +V 
Sbjct: 256 ALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVD 315

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK   +++A+ +F RM  K ++ WT +I GY + G ++EA R++ +M+  G+ PDD T
Sbjct: 316 MYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYT 375

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S++++CA    L  G + H             V NALV +Y KCGS+++A  +F+ M+
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMS 435

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
             D VSW A++ G A  G+ ++ + LF +M  +G  PD  TF+GVL AC+ AGF++KG  
Sbjct: 436 FHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRS 495

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF+SM++D+GI+P  +HY CMIDL  RSG+LKEA   ++ MP+ P+AI WGTLL ACR  
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +E+ +   + L+ +   +P +Y +L ++ AA G WN+VA +R  M+  + +K  G S 
Sbjct: 556 GDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSW 615

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           ++  N+VH FS  DQ HP S+ IY+ +  L   +   G+   +S+
Sbjct: 616 IKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSS 660



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 210/424 (49%), Gaps = 54/424 (12%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++F  N+L+ + +   ++  S  + LF SM +RDIVS+N++IAG   GG  ++A R++  
Sbjct: 71  NLFTYNALLSTLAHARLL--SDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLA 128

Query: 209 M--------PER---------------------------------DAVSWNTILDGYAKA 227
           +        P R                                 +A   + ++D YAK 
Sbjct: 129 LLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKM 188

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
             +  A   F+++  +N+V ++TM+ G  +   +E A+ LF+ M  +  + WT +++G+ 
Sbjct: 189 SLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFT 248

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           + G+  EA  ++ +M   G+  D  T  SIL AC     L  G ++HA I + R+  N  
Sbjct: 249 QNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVF 308

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           V +ALVDMY+KC S+  A +VF  MT K+++SW A++ G   +G  E+A+ +FS M+ +G
Sbjct: 309 VGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDG 368

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             PD YT   V+ +C +   +++G Q F+ +    G++  +     ++ L G+ G +++A
Sbjct: 369 IDPDDYTLGSVISSCANLASLEEGAQ-FHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 468 LRLVQSMPVEPNAIIWGTLLGAC----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
            RL   M    + + W  L+       R    ++L E++L      KG  P   T +  +
Sbjct: 428 HRLFDEMSFH-DQVSWTALVSGYAQFGRAKETIDLFEKML-----AKGVKPDGVTFIGVL 481

Query: 524 FAAT 527
            A +
Sbjct: 482 SACS 485



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 186/404 (46%), Gaps = 47/404 (11%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV-- 91
           KQ   QI++L    + ++   L+   A    +G A + F+++   +V +YNT+I   +  
Sbjct: 160 KQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRC 219

Query: 92  -----------------------------QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
                                        QN L ++A  +F  M+ +G+  D +T+  +L
Sbjct: 220 KMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSIL 279

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            AC   +     + IHA I +  Y  ++FV ++L+D YSKC    + LA+ +F  M  ++
Sbjct: 280 TACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCR--SIKLAETVFRRMTCKN 337

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA--------- 233
           I+SW ++I G  + G   EA R+F EM +RD +  +    G   +   NLA         
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEM-QRDGIDPDDYTLGSVISSCANLASLEEGAQFH 396

Query: 234 -FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
              L   + H   VS + +V  Y K G +E A  LFD M     V WT ++SGYA+ G A
Sbjct: 397 CLALVSGLMHYITVS-NALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRA 455

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNA 351
           KE   L+++M   G+KPD  T I +L+AC+ +G +  G     S+ K +      +    
Sbjct: 456 KETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTC 515

Query: 352 LVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
           ++D+Y++ G L  A      M    D + W  +L    + G  E
Sbjct: 516 MIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 140/327 (42%), Gaps = 46/327 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q KQ+ A II+     + ++   L+   + CR + LA  VF  +   ++  +  LI  
Sbjct: 288 LEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVG 347

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN  + +A RVF +MQ  G+  D++T   ++ +C            H L    G    
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V N+L+  Y KCG   +  A +LF  M   D VSW ++++G  + G   E   LF++M
Sbjct: 408 ITVSNALVTLYGKCG--SIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKM 465

Query: 210 PER----DAVS------------------------------------WNTILDGYAKAGE 229
             +    D V+                                    +  ++D Y+++G+
Sbjct: 466 LAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGK 525

Query: 230 MNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM---PAKTLVPWTIIISG 285
           +  A E  +++P H + + W T++      GDME+ K   + +     +    + ++ S 
Sbjct: 526 LKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSM 585

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           +A KG   E A+L   M +  +K + G
Sbjct: 586 HAAKGQWNEVAQLRRGMRDRQVKKEPG 612


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 202/594 (34%), Positives = 311/594 (52%), Gaps = 72/594 (12%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R L +     L  C  + + KQ+  QII     +  ++  KL+S       +  A KVF 
Sbjct: 15  RALQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFE 74

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
            I++P   ++N +IR   Q+    +   ++  M E     + FTY FL+  C        
Sbjct: 75  RIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLRE 134

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +H  +   GY  ++FV  SL++ Y+                            IAG 
Sbjct: 135 GEQVHGRVVANGYCTNVFVRTSLVNLYA----------------------------IAGG 166

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
             G  + +ARR+FDE+ +R                               NIVSW++++ 
Sbjct: 167 YDG--VRKARRVFDEIVDR-------------------------------NIVSWNSLLA 193

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           GY + GD++ A+ +FD MP + +V WT +I+G A+ G  K+A  L+ +M  AG+K D   
Sbjct: 194 GYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVA 253

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCN----TNVCNALVDMYAKCGSLDNAMSVF 369
           L++ L+ACAE G L LG  +H+ I++     N     ++ N+L+ MYA CG +D A  VF
Sbjct: 254 LVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVF 313

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK----DEGFGPDKYTFVGVLCACTHA 425
            GM ++  +SW +M+ G A  G  E+ALG+F  M+    DEG  PD  TF+GVLCAC+HA
Sbjct: 314 IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEG-RPDGITFIGVLCACSHA 372

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           GF+D+G  +F  M + +GI+P++EHYGCM+DLL R+G L EA RL++SMP++PN  +WG 
Sbjct: 373 GFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGA 432

Query: 486 LLGACRKHNAVELAEEVLDCL-IRLKGSDPGNY-TMLSNIFAATGDWNKVANVRLQMKKT 543
           LLG CR H   ELA  V   L + LK      Y  +LSN++A    W  VA VR +M + 
Sbjct: 433 LLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEI 492

Query: 544 RAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             +KP+G S V+++  VH+F   D  H  +  +Y+M++ + +  K  G+   +S
Sbjct: 493 GVRKPAGRSWVQINGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDIS 546


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 205/576 (35%), Positives = 319/576 (55%), Gaps = 21/576 (3%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q K++ A++ ++ L  + Y+   L+S    C  M  A++VFN ++  +V  +  +I  
Sbjct: 322 LEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAG 381

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +AF  F  M E G+  +  T+  +L AC+  +     + IH  I K GY  D
Sbjct: 382 FAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITD 441

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
             V  +L+  Y+KCG   +  A+ +F  + ++++V+WN+MI   V+  +   A    + L
Sbjct: 442 DRVRTALLSMYAKCG--SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL 499

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFEL--------FEKIPH-RNIVSWSTMVWGYS 256
             E  + D+ ++ +IL+       + L   +        FE   H RN      +V  + 
Sbjct: 500 LKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRN-----ALVSMFV 554

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             GD+  A  LF+ MP + LV W  II+G+ + G  + A   +  M+E+G+KPD  T   
Sbjct: 555 NCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTG 614

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L ACA    L  G ++HA I +    C+  V   L+ MY KCGS+D+A  VF+ + KK+
Sbjct: 615 LLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKN 674

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           + SW +M+ G A HG+G++AL LF +M+ EG  PD  TFVG L AC HAG I +G+ +F 
Sbjct: 675 VYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFE 734

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM +D+ I P++EHYGCM+DL GR+G L EA+  +  M V+P++ +WG LLGAC+ H  V
Sbjct: 735 SM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDV 793

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ELAE+V    + L  +D G Y +LSNI+AA G W +V  +R  M      K  G S +EV
Sbjct: 794 ELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEV 853

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           D  VH F   D+ HP+ E+I+  +  L  ++K +G+
Sbjct: 854 DGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGY 889



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/506 (26%), Positives = 259/506 (51%), Gaps = 13/506 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           KN+++  +LF+ I+      D ++   LI+    C  +  A+KVFN++   D+  + ++I
Sbjct: 219 KNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMI 278

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               ++    QA  +F  M+E+GV  D   +  LLKACN        + +HA + + G  
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +I+V  +L+  Y+KCG +  +L  ++F  +  R++VSW +MIAG  + G + EA   F+
Sbjct: 339 TEIYVGTALLSMYTKCGSMEDAL--EVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFN 396

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDG 259
           +M E     + V++ +IL   ++   +    ++ ++I     ++     + ++  Y+K G
Sbjct: 397 KMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCG 456

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +  A+ +F+R+  + +V W  +I+ Y +      A   +  + + G+KPD  T  SIL 
Sbjct: 457 SLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILN 516

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
            C     L LG  V + I +  F+ + ++ NALV M+  CG L +AM++FN M ++DLVS
Sbjct: 517 VCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVS 576

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN ++ G   HG+ + A   F  M++ G  PD+ TF G+L AC     + +G +  +++ 
Sbjct: 577 WNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEG-RRLHALI 635

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            +  +   V     +I +  + G + +A  +  ++P + N   W +++    +H   + A
Sbjct: 636 TEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLP-KKNVYSWTSMITGYAQHGRGKEA 694

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFA 525
            E+  C ++ +G  P   T +  + A
Sbjct: 695 LELF-CQMQQEGVKPDWITFVGALSA 719



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/554 (27%), Positives = 251/554 (45%), Gaps = 75/554 (13%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           + +P     R+     LQ   K KNL   +++   I    +Q D ++   LIS  A C  
Sbjct: 95  VDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGN 154

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
              A ++F+++ D DV+ +N L+   VQ+    +AFR+   M + GV  D +T+ ++L A
Sbjct: 155 TNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNA 214

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C           + +LI   G+  D+FV  +LI+ + KCG  GV  A K+F ++  RD++
Sbjct: 215 CADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCG--GVDDALKVFNNLPRRDLI 272

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG----------------- 223
           +W SMI GL +  +  +A  LF  M E     D V++ ++L                   
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 224 ------------------YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
                             Y K G M  A E+F  +  RN+VSW+ M+ G+++ G ME A 
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           L F++M                                E+G++P+  T +SIL AC+   
Sbjct: 393 LFFNKMI-------------------------------ESGIEPNRVTFMSILGACSRPS 421

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H  I K  +  +  V  AL+ MYAKCGSL +A +VF  ++K+++V+WNAM+ 
Sbjct: 422 ALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMIT 481

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
               H + + A+  F  +  EG  PD  TF  +L  C     ++ G ++  S+    G  
Sbjct: 482 AYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFE 540

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
             +     ++ +    G L  A+ L   MP E + + W T++    +H   + A +    
Sbjct: 541 SDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERDLVSWNTIIAGFVQHGENQFAFDYFK- 598

Query: 506 LIRLKGSDPGNYTM 519
           +++  G  P   T 
Sbjct: 599 MMQESGVKPDQITF 612



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 216/433 (49%), Gaps = 13/433 (3%)

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
           ++A  V L +    +     TY  LL+ C         + IH  I       DIF+ N L
Sbjct: 86  SEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNML 145

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER---- 212
           I  Y+KCG    + AK++F  M ++D+ SWN ++ G V+     EA RL ++M +     
Sbjct: 146 ISMYAKCG--NTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKP 203

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAKLLF 268
           D  ++  +L+  A A  ++   ELF  I +     ++   + ++  + K G ++ A  +F
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           + +P + L+ WT +I+G A     K+A  L+  MEE G++PD    +S+L AC     L 
Sbjct: 264 NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALE 323

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
            G +VHA + +        V  AL+ MY KCGS+++A+ VFN +  +++VSW AM+ G A
Sbjct: 324 QGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFA 383

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG+ E+A   F++M + G  P++ TF+ +L AC+    + +G Q    + +  G +   
Sbjct: 384 QHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIK-AGYITDD 442

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
                ++ +  + G L +A  + + +  + N + W  ++ A  +H   + A      L++
Sbjct: 443 RVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLK 501

Query: 509 LKGSDPGNYTMLS 521
            +G  P + T  S
Sbjct: 502 -EGIKPDSSTFTS 513



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 185/363 (50%), Gaps = 35/363 (9%)

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
           F KI   +I  W+ ++  Y+K G+   AK +FD MP K +  W +++ GY +    +EA 
Sbjct: 132 FSKI-QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAF 190

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
           RL++QM + G+KPD  T + +L ACA++  +  G ++ + I    +  +  V  AL++M+
Sbjct: 191 RLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMH 250

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
            KCG +D+A+ VFN + ++DL++W +M+ GLA H Q ++A  LF  M++EG  PDK  FV
Sbjct: 251 IKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFV 310

Query: 417 GVLCACTHAGFIDKGVQYFYSMER---------DYGILPQVEHYGCMIDLL-------GR 460
            +L AC H   +++G +    M+             +L      G M D L       GR
Sbjct: 311 SLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR 370

Query: 461 S--------------GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           +              GR++EA      M    +EPN + + ++LGAC + +A++   ++ 
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIH 430

Query: 504 DCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           D +I+    +D    T L +++A  G      NV  ++ K      +   +  V +E ++
Sbjct: 431 DRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYD 490

Query: 563 FSV 565
            +V
Sbjct: 491 NAV 493



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 111/213 (52%), Gaps = 2/213 (0%)

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           ++ G   EA  +   ++   ++    T  S+L  C +   LG G ++H  I   + + + 
Sbjct: 80  SKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDI 139

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
            + N L+ MYAKCG+ ++A  +F+ M  KD+ SWN +L G   H + E+A  L  +M  +
Sbjct: 140 FMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQD 199

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  PDKYTFV +L AC  A  +DKG + F S+  + G    +     +I++  + G + +
Sbjct: 200 GVKPDKYTFVYMLNACADAKNVDKGGELF-SLILNAGWDTDLFVGTALINMHIKCGGVDD 258

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           AL++  ++P   + I W +++    +H   + A
Sbjct: 259 ALKVFNNLP-RRDLITWTSMITGLARHRQFKQA 290


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 308/539 (57%), Gaps = 12/539 (2%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +G A KVF+ + + ++  +  +I    Q      A  +FLDM+  G   D FTY  +L A
Sbjct: 199 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 258

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDI 183
           C       L + +H+ + + G   D+ V  SL+D Y+KC   G V  ++K+F  M E ++
Sbjct: 259 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 318

Query: 184 VSWNSMIAGLVKGGELS-EARRLFDEMP----ERDAVSWNTILDGYAK-----AGEMNLA 233
           +SW ++I   V+ GE   EA  LF +M       +  S++++L           GE   +
Sbjct: 319 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 378

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
           + +   I   N V  ++++  Y++ G ME A+  FD +  K LV +  I+ GYA+   ++
Sbjct: 379 YAVKLGIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA  L++++ + G+     T  S+L+  A  G +G G ++H  + K  +K N  +CNAL+
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 497

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
            MY++CG+++ A  VFN M  ++++SW +M+ G A HG   +AL +F +M + G  P++ 
Sbjct: 498 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 557

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           T+V VL AC+H G I +G ++F SM +++GI+P++EHY CM+DLLGRSG L EA+  + S
Sbjct: 558 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 617

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP+  +A++W TLLGACR H   EL     + ++  +  DP  Y +LSN+ A+ G W  V
Sbjct: 618 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 677

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             +R  MK+    K +G S +EV+N VH F V +  HP++ QIYQ ++ L   +K +G+
Sbjct: 678 VKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 736



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 255/523 (48%), Gaps = 22/523 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-D 79
           L++  + +N    K +  ++++  L+ D  +   LIS  + C     A  +F  + +  D
Sbjct: 51  LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 110

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           +  ++ ++     NS+  QA   FLDM E G + + + +  +++AC+  N+  + ++I+ 
Sbjct: 111 LVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYG 170

Query: 140 LIYKCGYF-GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
            + K GY   D+ V   LID + K G   +  A K+F  M ER++V+W  MI    + G 
Sbjct: 171 FVVKTGYLEADVCVGCELIDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 229

Query: 199 LSEARRLFDEM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSW 248
             +A  LF +M      P+R   +++++L    + G + L  +L  ++       ++   
Sbjct: 230 ARDAIDLFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 287

Query: 249 STMVWGYSK---DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA-KEAARLYDQMEE 304
            ++V  Y+K   DG ++ ++ +F++MP   ++ WT II+ Y + G   KEA  L+ +M  
Sbjct: 288 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 347

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
             ++P+  +  S+L AC        G +V++   K        V N+L+ MYA+ G +++
Sbjct: 348 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 407

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A   F+ + +K+LVS+NA++ G A + + E+A  LF+ + D G G   +TF  +L     
Sbjct: 408 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 467

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G + KG Q    + +  G          +I +  R G ++ A ++   M  + N I W 
Sbjct: 468 IGAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 525

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +++    KH     A E+   ++   G+ P   T ++ + A +
Sbjct: 526 SMITGFAKHGFATRALEMFHKMLE-TGTKPNEITYVAVLSACS 567



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 213/430 (49%), Gaps = 24/430 (5%)

Query: 75  IQDPDVH-LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +++P+   L N LIR      L+  AF     M ++    D  TY  LLK+C     F L
Sbjct: 4   LKNPNFEPLKNRLIRQLDVGRLH-HAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQL 62

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAG 192
            +++H  + + G   D  V N+LI  YSKCG      A+ +F  MG +RD+VSW++M++ 
Sbjct: 63  GKLVHRKLMQSGLELDSVVLNTLISLYSKCG--DTETARLIFEGMGNKRDLVSWSAMVSC 120

Query: 193 LVKGGELSEARRLFDEMPERD---------AVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
                   +A   F +M E           AV        YA  GE+   F +       
Sbjct: 121 FANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEA 180

Query: 244 NIVSWSTMVWGYSK-DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           ++     ++  + K  GD+  A  +FD+MP + LV WT++I+ +A+ G A++A  L+  M
Sbjct: 181 DVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM 240

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC--- 359
           E +G  PD  T  S+L+AC E GLL LG ++H+ + +     +  V  +LVDMYAKC   
Sbjct: 241 ELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAAD 300

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK-ALGLFSRMKDEGFGPDKYTFVGV 418
           GS+D++  VF  M + +++SW A++      G+ +K A+ LF +M      P+ ++F  V
Sbjct: 301 GSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSV 360

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR----LVQSM 474
           L AC +      G Q  YS     GI         +I +  RSGR+++A +    L +  
Sbjct: 361 LKACGNLSDPYTGEQ-VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 419

Query: 475 PVEPNAIIWG 484
            V  NAI+ G
Sbjct: 420 LVSYNAIVDG 429



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G    A    D M +    PD  T   +L +C       LG  VH  + +   + ++ V 
Sbjct: 23  GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 82

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
           N L+ +Y+KCG  + A  +F GM  K+DLVSW+AM+   A +    +A+  F  M + GF
Sbjct: 83  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 142

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MIDLLGR-SGRLKE 466
            P++Y F  V+ AC++A +   G +  Y      G L      GC +ID+  + SG L  
Sbjct: 143 YPNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 201

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI--RLKGSDPGNYTMLSNIF 524
           A ++   MP E N + W  ++    +   +  A + +D  +   L G  P  +T  S + 
Sbjct: 202 AYKVFDKMP-ERNLVTWTLMI---TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 525 AAT 527
           A T
Sbjct: 258 ACT 260


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 195/576 (33%), Positives = 306/576 (53%), Gaps = 73/576 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-----QMGLAIKVFNDIQDP 78
           L  CK++   KQ+  QI++    +       L   +  C       +  A ++FN I  P
Sbjct: 39  LKNCKSMQHLKQIQTQILRTGFHQS---GDTLNKFMVCCTDPSIGNLHYAERIFNYIDIP 95

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            + +YN +I+A  +N    +A  +F  ++E+G+  DNFTYPF+ KA          + ++
Sbjct: 96  GLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVY 155

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             + K G   D +V NSL+D Y++ G V                                
Sbjct: 156 GFVVKSGLEFDTYVCNSLMDMYAEVGRV-------------------------------- 183

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWG 254
               R++F+EMP+RD VSWN ++ GY K      A ++F +I    P + ++ W++MV G
Sbjct: 184 -QNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSG 242

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y   G ++ A+ LF+R P + +V WT +I+GY +     +A  L+ +M+   + PD  TL
Sbjct: 243 YVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTL 302

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +++L                          +  V  AL++MYAKCG ++ ++ +FNG+ +
Sbjct: 303 VALLT-------------------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKE 337

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD  SW +++ GLAM+G+  KAL LF+ M   G  PD  TF+GVL AC+H G +++G ++
Sbjct: 338 KDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKH 397

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII---WGTLLGACR 491
           F SM   Y I P++EHYGC+IDLLGR+G+L EA  L++  P   N +I   +G LL ACR
Sbjct: 398 FRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACR 457

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  VE+ E V   L+ ++  D   +T+L+NI+A+   W  V  VR +MK    +K  G 
Sbjct: 458 THGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGC 517

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           SSVEV+  VHEF V D  HP+  +IY M++++ K L
Sbjct: 518 SSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPL 553


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  354 bits (909), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 188/539 (34%), Positives = 308/539 (57%), Gaps = 12/539 (2%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +G A KVF+ + + ++  +  +I    Q      A  +FLDM+  G   D FTY  +L A
Sbjct: 181 LGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSA 240

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDI 183
           C       L + +H+ + + G   D+ V  SL+D Y+KC   G V  ++K+F  M E ++
Sbjct: 241 CTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNV 300

Query: 184 VSWNSMIAGLVKGGELS-EARRLFDEMP----ERDAVSWNTILDGYAK-----AGEMNLA 233
           +SW ++I   V+ GE   EA  LF +M       +  S++++L           GE   +
Sbjct: 301 MSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS 360

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
           + +   I   N V  ++++  Y++ G ME A+  FD +  K LV +  I+ GYA+   ++
Sbjct: 361 YAVKLGIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA  L++++ + G+     T  S+L+  A  G +G G ++H  + K  +K N  +CNAL+
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 479

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
            MY++CG+++ A  VFN M  ++++SW +M+ G A HG   +AL +F +M + G  P++ 
Sbjct: 480 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 539

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           T+V VL AC+H G I +G ++F SM +++GI+P++EHY CM+DLLGRSG L EA+  + S
Sbjct: 540 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 599

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP+  +A++W TLLGACR H   EL     + ++  +  DP  Y +LSN+ A+ G W  V
Sbjct: 600 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 659

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             +R  MK+    K +G S +EV+N VH F V +  HP++ QIYQ ++ L   +K +G+
Sbjct: 660 VKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 718



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/523 (25%), Positives = 255/523 (48%), Gaps = 22/523 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-D 79
           L++  + +N    K +  ++++  L+ D  +   LIS  + C     A  +F  + +  D
Sbjct: 33  LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 92

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           +  ++ ++     NS+  QA   FLDM E G + + + +  +++AC+  N+  + ++I+ 
Sbjct: 93  LVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYG 152

Query: 140 LIYKCGYF-GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
            + K GY   D+ V   LID + K G   +  A K+F  M ER++V+W  MI    + G 
Sbjct: 153 FVVKTGYLEADVCVGCELIDMFVK-GSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 211

Query: 199 LSEARRLFDEM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSW 248
             +A  LF +M      P+R   +++++L    + G + L  +L  ++       ++   
Sbjct: 212 ARDAIDLFLDMELSGYVPDR--FTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVG 269

Query: 249 STMVWGYSK---DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA-KEAARLYDQMEE 304
            ++V  Y+K   DG ++ ++ +F++MP   ++ WT II+ Y + G   KEA  L+ +M  
Sbjct: 270 CSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS 329

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
             ++P+  +  S+L AC        G +V++   K        V N+L+ MYA+ G +++
Sbjct: 330 GHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMED 389

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A   F+ + +K+LVS+NA++ G A + + E+A  LF+ + D G G   +TF  +L     
Sbjct: 390 ARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAAS 449

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G + KG Q    + +  G          +I +  R G ++ A ++   M  + N I W 
Sbjct: 450 IGAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWT 507

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +++    KH     A E+   ++   G+ P   T ++ + A +
Sbjct: 508 SMITGFAKHGFATRALEMFHKMLE-TGTKPNEITYVAVLSACS 549



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/406 (31%), Positives = 201/406 (49%), Gaps = 22/406 (5%)

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
            AF     M ++    D  TY  LLK+C     F L +++H  + + G   D  V N+LI
Sbjct: 9   HAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLI 68

Query: 158 DSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD--- 213
             YSKCG      A+ +F  MG +RD+VSW++M++         +A   F +M E     
Sbjct: 69  SLYSKCG--DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYP 126

Query: 214 ------AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK-DGDMEMAKL 266
                 AV        YA  GE+   F +       ++     ++  + K  GD+  A  
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +FD+MP + LV WT++I+ +A+ G A++A  L+  ME +G  PD  T  S+L+AC E GL
Sbjct: 187 VFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGL 246

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKC---GSLDNAMSVFNGMTKKDLVSWNAM 383
           L LG ++H+ + +     +  V  +LVDMYAKC   GS+D++  VF  M + +++SW A+
Sbjct: 247 LALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAI 306

Query: 384 LYGLAMHGQGEK-ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           +      G+ +K A+ LF +M      P+ ++F  VL AC +      G Q  YS     
Sbjct: 307 ITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQ-VYSYAVKL 365

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALR----LVQSMPVEPNAIIWG 484
           GI         +I +  RSGR+++A +    L +   V  NAI+ G
Sbjct: 366 GIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDG 411



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 113/243 (46%), Gaps = 10/243 (4%)

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G    A    D M +    PD  T   +L +C       LG  VH  + +   + ++ V 
Sbjct: 5   GRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVL 64

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
           N L+ +Y+KCG  + A  +F GM  K+DLVSW+AM+   A +    +A+  F  M + GF
Sbjct: 65  NTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGF 124

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MIDLLGR-SGRLKE 466
            P++Y F  V+ AC++A +   G +  Y      G L      GC +ID+  + SG L  
Sbjct: 125 YPNEYCFAAVIRACSNANYAWVG-EIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS 183

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI--RLKGSDPGNYTMLSNIF 524
           A ++   MP E N + W  ++    +   +  A + +D  +   L G  P  +T  S + 
Sbjct: 184 AYKVFDKMP-ERNLVTWTLMI---TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 525 AAT 527
           A T
Sbjct: 240 ACT 242


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 198/571 (34%), Positives = 315/571 (55%), Gaps = 20/571 (3%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPDVH-LYNTLIRACVQNSLNA 97
           ++K   + + ++   L+   A C+ +  A  +F  ++ D   H L+  ++    QN    
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGY 247

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           +A   F  M  +GV  + +T+P +L AC+        + +H  I K G+  +++V ++L+
Sbjct: 248 KAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSALV 307

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
           D Y+KCG   +  AK +  +M + D+VSWNS++ G V+ G   EA RLF  M  R     
Sbjct: 308 DMYAKCG--DLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGR----- 360

Query: 218 NTILDGYAKAGEMNLAF--ELFEKIPHRNIVSW---------STMVWGYSKDGDMEMAKL 266
           N  +D Y     +N      +  K  H  I+           + +V  Y+K GDM+ A  
Sbjct: 361 NMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYT 420

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F++M  K ++ WT +++GYA+    +E+ +++  M   G+ PD   + SIL+ACAE  L
Sbjct: 421 VFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTL 480

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L  G +VH    K   + + +V N+LV MYAKCG LD+A ++F  M  KD+++W A++ G
Sbjct: 481 LEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVG 540

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
            A +G+G  +L  +  M   G  PD  TF+G+L AC+HAG +D+G +YF  M + YGI P
Sbjct: 541 YAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKP 600

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
             EHY CMIDL GRSG+L EA +L+  M V+P+A +W +LL ACR H  +ELAE     L
Sbjct: 601 GPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNL 660

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
             L+  +   Y MLSN+++A+  WN VA +R  MK     K  G S +E+++ V+ F   
Sbjct: 661 FELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISD 720

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           D+ HP+  +IY  I+ +   +K  G+   +S
Sbjct: 721 DRGHPREAEIYTKIDEIILRIKEAGYVPDMS 751



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 250/541 (46%), Gaps = 25/541 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L K   +N  ++LF ++     Q+D Y    +ISS     ++  A ++F+       
Sbjct: 72  LNQLSKSGQVNDARKLFDKMP----QKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSS 127

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++++I    +     +AF +F  M+ +G     FT   +L+ C+        +MIH  
Sbjct: 128 ITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGE 198
           + K G+ G++FV   L+D Y+KC    VS A+ LF  +    ++ V W +M+ G  + G+
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKC--VSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGD 245

Query: 199 LSEARRLFDEMP----ERDAVSWNTILDGYAKA-----GEMNLAFELFEKIPHRNIVSWS 249
             +A   F  M     E +  ++ TIL   +       GE    F + +     N+   S
Sbjct: 246 GYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGF-IVKSGFGSNVYVQS 304

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            +V  Y+K GD++ AK + + M    +V W  ++ G+   G+ +EA RL+  M    +K 
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKI 364

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           DD T  S+L  C    +      VH  I K  F+    V NALVDMYAK G +D A +VF
Sbjct: 365 DDYTFPSVLNCCVVGSI--NPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVF 422

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
             M +KD++SW +++ G A +   E++L +F  M+  G  PD++    +L AC     ++
Sbjct: 423 EKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLE 482

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G Q      +  G+      Y  ++ +  + G L +A  +  SM V+ + I W  ++  
Sbjct: 483 FGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVK-DVITWTAIIVG 540

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT--GDWNKVANVRLQMKKTRAQK 547
             ++     + +  D ++   G+ P   T +  +FA +  G  ++      QM K    K
Sbjct: 541 YAQNGKGRNSLKFYDAMVS-SGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIK 599

Query: 548 P 548
           P
Sbjct: 600 P 600



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/430 (28%), Positives = 202/430 (46%), Gaps = 61/430 (14%)

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
           +  I+  N L++  SK G   V+ A+KLF  M ++D  SWN+MI+  V  G L EAR LF
Sbjct: 62  YESIYQTNQLLNQLSKSG--QVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELF 119

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP------------------------- 241
           D    + +++W++I+ GY K G    AF+LF  +                          
Sbjct: 120 DGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQ 179

Query: 242 --------------HRNIVSWSTMVWGYSKDGDMEMAKLLFD--RMPAKTLVPWTIIISG 285
                           N+   + +V  Y+K   +  A+ LF       K  V WT +++G
Sbjct: 180 TGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTG 239

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           YA+ G   +A   +  M   G++ +  T  +IL AC+       G +VH  I K  F  N
Sbjct: 240 YAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSN 299

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V +ALVDMYAKCG L NA ++   M   D+VSWN+++ G   HG  E+AL LF  M  
Sbjct: 300 VYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHG 359

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV--EHY----GCMIDLLG 459
                D YTF  VL  C       K V         +G++ +   E+Y      ++D+  
Sbjct: 360 RNMKIDDYTFPSVLNCCVVGSINPKSV---------HGLIIKTGFENYKLVSNALVDMYA 410

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           ++G +  A  + + M +E + I W +L+    ++N+ E + ++  C +R+ G +P  + +
Sbjct: 411 KTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESLKIF-CDMRVTGVNPDQF-I 467

Query: 520 LSNIFAATGD 529
           +++I +A  +
Sbjct: 468 VASILSACAE 477



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 127/292 (43%), Gaps = 35/292 (11%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K +   IIK   +    ++  L+   A    M  A  VF  + + DV  + +L+    QN
Sbjct: 384 KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           + + ++ ++F DM+  GV  D F    +L AC         + +H    K G      V 
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVY 503

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           NSL+  Y+KCG   +  A  +F+SM  +D+++W ++I G  + G+   + + +D M    
Sbjct: 504 NSLVAMYAKCGC--LDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSG 561

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
              D +++  +L   + AG ++   + F+++           V+G  K G    A     
Sbjct: 562 TRPDFITFIGLLFACSHAGLVDEGRKYFQQM---------NKVYGI-KPGPEHYA----- 606

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
                       +I  +   G   EA +L DQM+   +KPD     S+L+AC
Sbjct: 607 -----------CMIDLFGRSGKLDEAKQLLDQMD---VKPDATVWKSLLSAC 644


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 192/529 (36%), Positives = 290/529 (54%), Gaps = 67/529 (12%)

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV------ 168
           NFT PF LK             +HA + K          NS + S     V  V      
Sbjct: 24  NFTSPFELK------------QLHAHLLK---------TNSPLSSLPLSRVASVCAFNSS 62

Query: 169 -SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA------RRLFDEMPERDAVSW---- 217
            S AK +F  +   ++  WN+ +    +G   ++A       R FD  P+    S+    
Sbjct: 63  FSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKA 122

Query: 218 -----------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
                                        N I+  YA  GE+ +A ++F+K+P R++++W
Sbjct: 123 CSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITW 182

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + M+    K GD E A  LF  MP + +  WT +I GYA+ G +KEA  L+ +ME+AGL 
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL 242

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P++ T++++L ACA+ G L LG ++H   N+  ++ N  VCN L+DMY KCG L++A  +
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ M ++ +VSW+AM+ GLA HG+ E AL LF++M + G  P+  TF+G+L AC+H G +
Sbjct: 303 FDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMV 362

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           +KG +YF SM RDYGI+P++EHYGCM+DL  R+G L+EA   + +MP+ PN ++WG LLG
Sbjct: 363 EKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
            C+ H  ++LAEE    L +L   + G Y +LSNI+A  G W  VA VR  M+    +K 
Sbjct: 423 GCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKT 482

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            G SS+ V+  V+ F   D  HP++E+I+Q    L + +K  G+    S
Sbjct: 483 PGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTS 531



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 199/408 (48%), Gaps = 43/408 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           LH   +  + KQL A ++K +         ++ S  A       A  +F  +   +V  +
Sbjct: 22  LHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHW 81

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           NT +R+  +    A A  +F  ++E  +  D++T  F+LKAC+        +++H  + K
Sbjct: 82  NTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK 141

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   ++F+ N ++  Y+ CG +GV  A+K+F  M +RD+++WN MIA LVK G+   A 
Sbjct: 142 LGLQSNMFLQNMIVHLYALCGEIGV--ARKVFDKMPQRDVITWNIMIARLVKMGDAEGAY 199

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP---------------------- 241
           +LF EMPER+  SW +++ GYA+ G+   A +LF ++                       
Sbjct: 200 KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMG 259

Query: 242 -----------------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
                             +NI   +T++  Y K G +E A  +FD M  +T+V W+ +I+
Sbjct: 260 NLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFK 343
           G A  G A++A  L+++M   G+KP+  T I IL AC+  G++  G K  AS+ + Y   
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379

Query: 344 CNTNVCNALVDMYAKCGSLDNAMS-VFNGMTKKDLVSWNAMLYGLAMH 390
                   +VD++++ G L  A   + N     + V W A+L G  +H
Sbjct: 380 PRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 169/439 (38%), Gaps = 93/439 (21%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++   K +   + KL LQ + ++   ++   ALC ++G+A KVF+ +   DV  +N +I 
Sbjct: 128 DVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIA 187

Query: 89  ACV-------------------------------QNSLNAQAFRVFLDMQEKGVFTDNFT 117
             V                               Q   + +A  +FL+M++ G+  +  T
Sbjct: 188 RLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVT 247

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
              +L AC       L + IH    + GY  +I V N+LID Y                 
Sbjct: 248 VVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMY----------------- 290

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
                           VK G L +A R+FD M ER  VSW+ ++ G A  G    A  LF
Sbjct: 291 ----------------VKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334

Query: 238 EKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVP----WTIIISGYAE 288
            K+ +     N V++  ++   S  G +E  +  F  M     +VP    +  ++  ++ 
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G+ +EA      M  A   P+     ++L  C     + L  +    ++K     N   
Sbjct: 395 AGLLQEAHEFIMNMPIA---PNGVVWGALLGGCKVHKNIKLAEEATRHLSKLD-PLNDGY 450

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLY---------GLAMHGQGEKA 396
              L ++YA+ G  ++   V   M     K    W++++          G   H Q E+ 
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEI 510

Query: 397 L----GLFSRMKDEGFGPD 411
                 L  RMK +G+ P+
Sbjct: 511 FQTWEKLLQRMKLKGYVPN 529


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 211/584 (36%), Positives = 314/584 (53%), Gaps = 34/584 (5%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  NL  ++ +   ++K   Q D ++   ++     C Q+G A  +F+ +   DV  +N+
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNS 125

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    Q     +   +F +M  +G+  D+ T   L  +        +++ IH+   K G
Sbjct: 126 MILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG 185

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEAR 203
              D+ V N+ I +Y+KCG  G  LA+ +F  +  G +  VSWNSMIAG     + S+A 
Sbjct: 186 IDTDVSVSNTWIAAYAKCGEFG--LAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAV 243

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFE---------LFE-KIPH---------RN 244
             F +M           L G  +A    +            LF  K+ H          +
Sbjct: 244 GFFKKM-----------LCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSD 292

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           I   +T++  YSK GD+  A+ LFD M  KT V WT +I+GYAEKG   EA  L+  ME 
Sbjct: 293 IQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEA 352

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G KPD  T+IS+++ C ++G L LG  +         K N  VCNAL+D+YAKCGS+DN
Sbjct: 353 VGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDN 412

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  +F  M +K LVSW  ++ G A++G+ ++ALGLF +M + G  P+  TF+ VL AC H
Sbjct: 413 ARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNH 472

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AGF++KG + F  M + Y I P ++HY CM DLLGR GRLKEA   +Q+MP +P+  IW 
Sbjct: 473 AGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWS 532

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL AC+ H  V + E V   L  L+      Y  ++NI+A+ G W++VA +R  MK  +
Sbjct: 533 VLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNK 592

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           A K  G S V+V+ + HEF+V D+ HP+   IY+ +  L   +K
Sbjct: 593 AMKSPGKSLVQVNGKTHEFTVEDRCHPEGLLIYETLENLALQMK 636



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 222/465 (47%), Gaps = 16/465 (3%)

Query: 68  AIKVFNDIQDP-DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           A + FN   +   V  +N+ I   V      +A  +F  M++ G+  +N T+P + KAC+
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                   Q++H  + K  +  D+FV  S++D Y KC  +G   A  LF  M +RD+ SW
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLG--FAYNLFSRMPKRDVASW 123

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI- 245
           NSMI G  + G +     LF EM      + +  + G   +       ++ E I    I 
Sbjct: 124 NSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIK 183

Query: 246 ------VSWS-TMVWGYSKDGDMEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAA 296
                 VS S T +  Y+K G+  +A+ +FD +    KT V W  +I+GYA      +A 
Sbjct: 184 IGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAV 243

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
             + +M   G + D  T++S+L++C +  +L  G  +HA   +     +  V N L+ MY
Sbjct: 244 GFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMY 303

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           +KCG + +A  +F+ M  K  VSW AM+ G A  G  ++A+ LFS M+  G  PD  T +
Sbjct: 304 SKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTII 363

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            ++  C   G ++ G ++  +     G+   +     +ID+  + G +  A  L  +MP 
Sbjct: 364 SLMSGCGQTGALELG-KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP- 421

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           E + + W TL+  C  +   + A  +   ++ L G  P + T L+
Sbjct: 422 EKSLVSWTTLIAGCALNGEFKEALGLFFQMVEL-GLKPNHITFLA 465


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 317/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L +  QL + + K  +  D  +   L+     C  +  A+ +FN     +V L+N ++ 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q +  A++F +F  MQ  G+  + FTYP +L+ C       L + IH+L  K G+  
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES 378

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK G   +  A+++   + E+D+VSW SMIAG V+     +A   F E
Sbjct: 379 DMYVSGVLIDMYSKYG--WLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 209 MPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGD 260
           M +     D +   + + G A    M    ++  +I       ++  W+ +V  Y++ G 
Sbjct: 437 MQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGR 496

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  A   F+ M  K  +    ++SG+A+ G+ +EA +++ +M+++G+K +  T +S L+A
Sbjct: 497 IREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G ++HA + K      T V NAL+ +Y KCGS ++A   F+ M++++ VSW
Sbjct: 557 SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERNEVSW 616

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG+G +AL LF +MK EG  P+  TF+GVL AC+H G +++G+ YF SM  
Sbjct: 617 NTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSD 676

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +YGI P+ +HY C+ID+ GR+G+L  A + ++ MP+  +A++W TLL AC+ H  +E+ E
Sbjct: 677 EYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRTLLSACKVHKNIEVGE 736

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A T  W     VR  M+    +K  G S +EV N V
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGVRKEPGRSWIEVKNVV 796

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP +EQIY  +  +   +  VG+
Sbjct: 797 HAFFVGDRLHPLAEQIYNFLAVINDRVAKVGY 828



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/523 (27%), Positives = 241/523 (46%), Gaps = 19/523 (3%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L +  K +   Q + + AQ  K     + ++   +I+    C    LA +VF D+
Sbjct: 145 VLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVFCDM 204

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q      A  +F +MQ  G+  D  T   LL AC          
Sbjct: 205 PHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGT 264

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H+ ++K G   D  +  SL+D Y KCG V  +L   +F S    ++V WN M+    +
Sbjct: 265 QLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALV--IFNSSDRTNVVLWNLMLVAFGQ 322

Query: 196 GGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
             +L+++  LF +M       +  ++  IL       E++L  E    +  +        
Sbjct: 323 INDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLSVKTGFESDMY 381

Query: 252 VWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           V G     YSK G +E A+ + + +  K +V WT +I+GY +    K+A   + +M++ G
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           + PD+  L S ++ CA    +  G+++HA I    +  + ++ NALV++YA+CG +  A 
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAF 501

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           S F  M  KD ++ N ++ G A  G  E+AL +F RM   G   + +TFV  L A  +  
Sbjct: 502 SSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSASANLA 561

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            I +G Q  ++     G   + E    +I L G+ G  ++A      M  E N + W T+
Sbjct: 562 EIKQGKQ-IHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEMS-ERNEVSWNTI 619

Query: 487 LGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           + +C +H       E LD   ++K  G  P + T +  + A +
Sbjct: 620 ITSCSQHGR---GLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/469 (26%), Positives = 219/469 (46%), Gaps = 17/469 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF ++   D   +  ++    QN L  +A  ++  M   GV    +    +L +C  
Sbjct: 96  ARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTK 155

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F   ++IHA  YK G+  +IFV N++I  Y +CG     LA+++F  M  RD V++N
Sbjct: 156 AELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG--SFRLAERVFCDMPHRDTVTFN 213

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+G  + G    A  +F+EM       D V+ +++L   A  G++    +L   +   
Sbjct: 214 TLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKA 273

Query: 244 NIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            I S   M       Y K GD+E A ++F+      +V W +++  + +     ++  L+
Sbjct: 274 GISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELF 333

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM+ AG++P+  T   IL  C  +  + LG ++H+   K  F+ +  V   L+DMY+K 
Sbjct: 334 CQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKY 393

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L+ A  V   + +KD+VSW +M+ G   H   + AL  F  M+  G  PD       +
Sbjct: 394 GWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAI 453

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
             C     + +G+Q  ++     G    V  +  +++L  R GR++EA    + M ++  
Sbjct: 454 SGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDG 512

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFAA 526
               G + G  +      L EE L   +R+   G     +T +S + A+
Sbjct: 513 ITGNGLVSGFAQSG----LHEEALKVFMRMDQSGVKHNVFTFVSALSAS 557



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 217/447 (48%), Gaps = 26/447 (5%)

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           A+   +F D   +        +   L+AC  NG+ W  +V  IHA     G      V N
Sbjct: 23  AKVLSLFADKARQHGGLGPLDFACALRACRGNGRRW-QVVPEIHAKAVTRGLGKYRIVGN 81

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
            LID YSK G+V    A+++F  +  RD VSW +M++G  + G   EA  L+ +M     
Sbjct: 82  LLIDLYSKNGLV--LPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGV 139

Query: 215 VS----WNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMAK 265
           V      +++L    KA E+     L     +++     I   + ++  Y + G   +A+
Sbjct: 140 VPTPYVLSSVLSSCTKA-ELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAE 198

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F  MP +  V +  +ISG+A+ G  + A  ++++M+ +GL PD  T+ S+LAACA  G
Sbjct: 199 RVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLG 258

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H+ + K     +  +  +L+D+Y KCG ++ A+ +FN   + ++V WN ML 
Sbjct: 259 DLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLV 318

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
                    K+  LF +M+  G  P+++T+  +L  CT    ID G Q  +S+    G  
Sbjct: 319 AFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQ-IHSLSVKTGFE 377

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEE 501
             +   G +ID+  + G L++A R+++ M  E + + W +++    +H    +A+   +E
Sbjct: 378 SDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYVQHECCKDALAAFKE 436

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +  C     G  P N  + S I    G
Sbjct: 437 MQKC-----GIWPDNIGLASAISGCAG 458



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 179/374 (47%), Gaps = 14/374 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           + ++  +Q+ +  +K   + D Y++  LI   +    +  A +V   +++ DV  + ++I
Sbjct: 359 REIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMI 418

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              VQ+     A   F +MQ+ G++ DN      +  C G N       IHA IY  GY 
Sbjct: 419 AGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS 478

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+ + N+L++ Y++CG +  + +   F  M  +D ++ N +++G  + G   EA ++F 
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSS--FEEMELKDGITGNGLVSGFAQSGLHEEALKVFM 536

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWG-----YSKD 258
            M ++  V  N      A +   NLA     K  H  ++    S+ T V       Y K 
Sbjct: 537 RM-DQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKC 595

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G  E AK+ F  M  +  V W  II+  ++ G   EA  L+DQM++ G+KP+D T I +L
Sbjct: 596 GSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVL 655

Query: 319 AACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKD 376
           AAC+  GL+  G+    S+ ++Y  +   +    ++D++ + G LD A      M    D
Sbjct: 656 AACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAAD 715

Query: 377 LVSWNAMLYGLAMH 390
            + W  +L    +H
Sbjct: 716 AMVWRTLLSACKVH 729


>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
          Length = 633

 Score =  354 bits (908), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 298/546 (54%), Gaps = 60/546 (10%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           IR P   SK       LQ L   K + QT+ L   I K  L   P++  K+IS L+L   
Sbjct: 4   IRVPDLLSK-------LQQLSSVKEVEQTQCL---ITKSGLFNHPFVISKIISFLSLSPL 53

Query: 65  MGL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
             L  A  +F D    +  + NT+IRA  ++    +A  ++  M  K + +D+F YPF L
Sbjct: 54  GSLVYAQAIFEDTTMDNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFMYPFGL 113

Query: 123 KACNGKNW-----FHLVQM--------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           KAC    W         Q+        IH  +++ G   D F+ NSL+  YS+CG + + 
Sbjct: 114 KACARVLWCNEGDIKCTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDL- 172

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
                                           ARR+FDEM E+   SWN ++  Y +  +
Sbjct: 173 --------------------------------ARRVFDEMTEKTITSWNVMISAYDQIND 200

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A  L   +P +N+VSW+ ++  Y + G +E AK +F  MP +  V W  +I+GY + 
Sbjct: 201 FDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQI 260

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
                A  L+ +ME A ++  D TLIS+L ACAE+G L +G K+H S+ +  +K    + 
Sbjct: 261 KDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKIHLSLKQREYKIEGYLS 320

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK--DEG 407
           NALVDMYAKCG L+ A  VF+ +  K +  WNAM+  LA+HG  E+AL LFS M+   +G
Sbjct: 321 NALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDG 380

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             P++ TF+GVL AC+H G +D+G ++F  M  +Y I+P ++HYGCM+DLL R G LKEA
Sbjct: 381 ARPNRVTFIGVLIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEA 440

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             ++++MP E N+++W TLLGACR H+ V+LAEE    L +++    G+Y +LSNI+A  
Sbjct: 441 HHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEPLRDGDYVLLSNIYAEA 500

Query: 528 GDWNKV 533
             WN V
Sbjct: 501 QRWNDV 506


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 300/588 (51%), Gaps = 66/588 (11%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK 70
           F      E  L  L KC    + KQ+ A+++K  L +DPY   K +S          A  
Sbjct: 5   FCSSFAFEHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHD 64

Query: 71  VF-NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           VF N    PD  L+N +IR    +    ++  ++  M       + +T+PFLLKAC+  +
Sbjct: 65  VFFNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLS 124

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
            F     IHA I K GY  DI+  NSL                                 
Sbjct: 125 AFQETTQIHAHITKFGYGHDIYAVNSL--------------------------------- 151

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSW 248
           I      G    A  LFD + E DAVSWN+++ GY KAGEM++A  LF K+P + N +SW
Sbjct: 152 INSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISW 211

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           +TM+ G                               Y + GM KEA +L+ +M+ + + 
Sbjct: 212 TTMISG-------------------------------YVQAGMNKEALQLFHEMQNSNVP 240

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           PD+ +L S L+AC++ G L  G  +H+  NK R + ++ +C  L+DMYAKCG ++ A+ V
Sbjct: 241 PDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGV 300

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F  M  K +  W A++ G A HG G +A+  F  M++ G  P+  TF  VL AC++ G +
Sbjct: 301 FKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLV 360

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           ++G   F ++ERDY + P +EHYGCM+DLLGR+G L EA R +Q MP++PNA+IWG+LL 
Sbjct: 361 EEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLK 420

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           AC+ H  +EL E++ + LI +  +  G Y  ++NI A    W+K A  R  M++    K 
Sbjct: 421 ACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKV 480

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            G S++ ++   HEF   D+ H + ++I      + + L+  G+  +L
Sbjct: 481 PGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPEL 528


>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 823

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 185/510 (36%), Positives = 290/510 (56%), Gaps = 41/510 (8%)

Query: 48  DPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           DP    +L+  S++A+   +  A  VF+ I  PD  +YNTLIR     +    A  ++  
Sbjct: 9   DPSELRELLFASAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTR 68

Query: 106 M----QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           M       GV  D  T+PF+L+AC           +HA + K G   D FV N+LI  ++
Sbjct: 69  MLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHA 128

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL 221
            CG +G++ A                                 LFD     DAV+W+ ++
Sbjct: 129 SCGNLGIAAA---------------------------------LFDGRAREDAVAWSAMI 155

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
            G A+ G++  A +LF++ P +++VSW+ M+  Y+K GDM +A+ LFD++P + +V W +
Sbjct: 156 TGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNV 215

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +ISGY   G    A  L++QM+  G KPD  T++S+L+ACA+SG L +G ++H+S++   
Sbjct: 216 MISGYVRCGSHLHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMF 275

Query: 342 FKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
            +    V   NAL+DMYAKCGS+ +A  VF  M  KD+ +WN+++ GLA+HG   +++ +
Sbjct: 276 SRNGFPVVLGNALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDM 335

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F +M      PD+ TFV VL AC+H G +DKG ++F  M+  Y + P ++HYGCM+D+LG
Sbjct: 336 FEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLG 395

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G LKEA   + +M  EPN++IW TLL ACR H  +ELA+     L++ +  + G+Y +
Sbjct: 396 RAGLLKEAFEFIDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVL 455

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           LSNI+A+ G+W     +R  M  +   K +
Sbjct: 456 LSNIYASVGEWFGSEKMRKLMDDSGVNKEA 485



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 170/374 (45%), Gaps = 53/374 (14%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+ A ++K   + D ++   LI   A C  +G+A  +F+     D   ++ +I  C +  
Sbjct: 103 QVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRG 162

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
                        + G   D      L   C  K                    D+   N
Sbjct: 163 -------------DIGAARD------LFDECPVK--------------------DLVSWN 183

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----P 210
            +I +Y+K G   ++LA++LF  + ERD+VSWN MI+G V+ G    A  LF++M     
Sbjct: 184 VMITAYAKRG--DMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE 241

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIP---HRN---IVSWSTMVWGYSKDGDMEMA 264
           + D V+  ++L   A +G++++   L   +     RN   +V  + ++  Y+K G M+ A
Sbjct: 242 KPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSA 301

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F  M  K +  W  I+ G A  G   E+  ++++M +  ++PD+ T +++L AC+  
Sbjct: 302 HEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHG 361

Query: 325 GLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
           G++  G +    + +KYR + N      +VDM  + G L  A    + M  + + V W  
Sbjct: 362 GMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRT 421

Query: 383 MLYGLAMHGQGEKA 396
           +L    +HG+ E A
Sbjct: 422 LLSACRVHGEIELA 435


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/574 (35%), Positives = 308/574 (53%), Gaps = 75/574 (13%)

Query: 55  LISSLALCRQ-MGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVF 112
           LIS L+L RQ +  A      I   P V  + +L+R  V++ L A A R+F  M E+   
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER--- 141

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            ++ +Y  LL                                 L+D+        V+ A+
Sbjct: 142 -NHVSYTVLL-------------------------------GGLLDAGR------VNEAR 163

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           +LF  M +RD+V+W +M++G  + G ++EAR LFDEMP+R+ VSW  ++ GYA+ GE+NL
Sbjct: 164 RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNL 223

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LFE +P RN VSW+ M+ GY + G +E A  LF+ MP   +     ++ G+ ++GM 
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283

Query: 293 KEAARLYDQMEEA-------------------------------GLKPDDGTLISILAAC 321
             A  ++++M E                                G++P+  ++ISIL  C
Sbjct: 284 DAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A   +L  G +VHA++ +  F  +    +AL+ MY KCG+LD A  VF+    KD+V WN
Sbjct: 344 AALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWN 403

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G A HG GE+ALG+F  M+  G  PD  T++G L AC++ G + +G + F SM  +
Sbjct: 404 SMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
             I P  EHY CM+DLLGRSG ++EA  L+++MPVEP+A+IWG L+GACR H   E+AE 
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEF 523

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L+ L+  + G Y +LS+I+ + G W   + +R  +      K  G S +E D  VH
Sbjct: 524 AAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVH 583

Query: 562 EFSVCDQL-HPKSEQIYQMINTLGKDLKPVGHAA 594
            F+  D L HP+   I +++  L   L   G++A
Sbjct: 584 LFTSGDVLAHPEHAAILRILEKLDGLLMESGYSA 617



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 186/441 (42%), Gaps = 83/441 (18%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+ I   ++ G   +  A+  F +M  R   S+N+++AG  +      A  LF  MP RD
Sbjct: 21  NARIAHLARAG--NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD 78

Query: 214 AVSWN---------------------------------TILDGYAKAGEMNLAFELFEKI 240
             S+N                                 ++L GY + G +  A  LF+++
Sbjct: 79  LASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 241 PHRN-------------------------------IVSWSTMVWGYSKDGDMEMAKLLFD 269
           P RN                               +V+W+ M+ GY + G +  A+ LFD
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            MP + +V WT +ISGYA+ G    A +L++ M E     ++ +  ++L    ++G +  
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVED 254

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             ++  ++ ++        CNA++  + + G +D A +VF  M ++D  +W+AM+     
Sbjct: 255 AAELFNAMPEH----PVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQ 310

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +    +AL  F  M   G  P+  + + +L  C     +D G +   +M R    +  V 
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDM-DVF 369

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII-WGTLLGACRKHNAVELAEEVLDCL-- 506
               +I +  + G L +A R+  +   EP  I+ W +++    +H    L E+ L     
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHG---LGEQALGIFHD 424

Query: 507 IRLKGSDPGNYTMLSNIFAAT 527
           +RL G  P   T +  + A +
Sbjct: 425 MRLAGMSPDGITYIGALTACS 445



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++ A +++     D +    LI+    C  +  A +VF+  +  D+ ++N++I  
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
             Q+ L  QA  +F DM+  G+  D  TY   L AC+
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACS 445


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 194/570 (34%), Positives = 301/570 (52%), Gaps = 68/570 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C  L +T +L A  ++  +  D  +  +L  + A   ++ L + +     DP    Y
Sbjct: 42  LTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFY 101

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            + I A     L+  A  +  +M  +G+   + T    L AC+G     L + +HA  +K
Sbjct: 102 TSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHG---LALGRALHAYAFK 158

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
               GD +V  +L+  Y++                                 GG+   AR
Sbjct: 159 LALAGDSYVATALLGMYAR---------------------------------GGDADAAR 185

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            LFDEMP+   V    +L  YAK G ++ A ELF+ +P ++ + W+ M+           
Sbjct: 186 ALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMI----------- 234

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
                                GY + G   EA RL+  M  +G+ PD+  +I  L+A A+
Sbjct: 235 --------------------DGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 274

Query: 324 SGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G    G  +H+ + N  R + N  V  AL+DMY KCGSL++A+SVFN +  KD+V WNA
Sbjct: 275 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 334

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G AMHG   KAL +FS+++ +G  P   TF+G+L AC+H+G +D+G Q+F SME +Y
Sbjct: 335 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 394

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I+P++EHYGCM+DLLGR+G ++EA  LVQSM + P+ ++W +LL ACR H  + L +++
Sbjct: 395 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 454

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D L+    ++ G Y +LSNI+AA G+W +VA VR  MK +  QK  G S++EV  +V+E
Sbjct: 455 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 514

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F   D  HP++++IY M+  +   +K  GH
Sbjct: 515 FVAGDMSHPRTDEIYAMLEKMNGIVKEQGH 544


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 194/570 (34%), Positives = 301/570 (52%), Gaps = 68/570 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C  L +T +L A  ++  +  D  +  +L  + A   ++ L + +     DP    Y
Sbjct: 41  LTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFY 100

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            + I A     L+  A  +  +M  +G+   + T    L AC+G     L + +HA  +K
Sbjct: 101 TSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHTLSSSLPACHG---LALGRALHAYAFK 157

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
               GD +V  +L+  Y++                                 GG+   AR
Sbjct: 158 LALAGDSYVATALLGMYAR---------------------------------GGDADAAR 184

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            LFDEMP+   V    +L  YAK G ++ A ELF+ +P ++ + W+ M+           
Sbjct: 185 ALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMI----------- 233

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
                                GY + G   EA RL+  M  +G+ PD+  +I  L+A A+
Sbjct: 234 --------------------DGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQ 273

Query: 324 SGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G    G  +H+ + N  R + N  V  AL+DMY KCGSL++A+SVFN +  KD+V WNA
Sbjct: 274 LGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNA 333

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G AMHG   KAL +FS+++ +G  P   TF+G+L AC+H+G +D+G Q+F SME +Y
Sbjct: 334 MINGYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEY 393

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I+P++EHYGCM+DLLGR+G ++EA  LVQSM + P+ ++W +LL ACR H  + L +++
Sbjct: 394 AIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQI 453

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D L+    ++ G Y +LSNI+AA G+W +VA VR  MK +  QK  G S++EV  +V+E
Sbjct: 454 ADYLVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYE 513

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F   D  HP++++IY M+  +   +K  GH
Sbjct: 514 FVAGDMSHPRTDEIYAMLEKMNGIVKEQGH 543


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 202/574 (35%), Positives = 308/574 (53%), Gaps = 75/574 (13%)

Query: 55  LISSLALCRQ-MGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVF 112
           LIS L+L RQ +  A      I   P V  + +L+R  V++ L A A R+F  M E+   
Sbjct: 85  LISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER--- 141

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            ++ +Y  LL                                 L+D+        V+ A+
Sbjct: 142 -NHVSYTVLL-------------------------------GGLLDAGR------VNEAR 163

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           +LF  M +RD+V+W +M++G  + G ++EAR LFDEMP+R+ VSW  ++ GYA+ GE+NL
Sbjct: 164 RLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNL 223

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LFE +P RN VSW+ M+ GY + G +E A  LF+ MP   +     ++ G+ ++GM 
Sbjct: 224 ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMV 283

Query: 293 KEAARLYDQMEEA-------------------------------GLKPDDGTLISILAAC 321
             A  ++++M E                                G++P+  ++ISIL  C
Sbjct: 284 DAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVC 343

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A   +L  G +VHA++ +  F  +    +AL+ MY KCG+LD A  VF+    KD+V WN
Sbjct: 344 AALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWN 403

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G A HG GE+ALG+F  M+  G  PD  T++G L AC++ G + +G + F SM  +
Sbjct: 404 SMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVN 463

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
             I P  EHY CM+DLLGRSG ++EA  L+++MPVEP+A+IWG L+GACR H   E+AE 
Sbjct: 464 SSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEF 523

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L+ L+  + G Y +LS+I+ + G W   + +R  +      K  G S +E D  VH
Sbjct: 524 AAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVH 583

Query: 562 EFSVCDQL-HPKSEQIYQMINTLGKDLKPVGHAA 594
            F+  D L HP+   I +++  L   L   G++A
Sbjct: 584 LFTSGDVLAHPEHAAILRILEKLDGLLMESGYSA 617



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 102/441 (23%), Positives = 185/441 (41%), Gaps = 83/441 (18%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+ I   ++ G   +  A+  F +M  R   S+N+++AG  +      A  LF  MP RD
Sbjct: 21  NARIAHLARAG--NIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD 78

Query: 214 AVSWN---------------------------------TILDGYAKAGEMNLAFELFEKI 240
             S+N                                 ++L GY + G +  A  LF+++
Sbjct: 79  LASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 241 PHRN-------------------------------IVSWSTMVWGYSKDGDMEMAKLLFD 269
           P RN                               +V+W+ M+ GY + G +  A+ LFD
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFD 198

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            MP + +V WT +ISGYA+ G    A +L++ M E     ++ +  ++L    ++G +  
Sbjct: 199 EMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPER----NEVSWTAMLVGYIQAGHVED 254

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             ++  ++ ++        CNA++  + + G +D A +VF  M ++D  +W+AM+     
Sbjct: 255 AAELFNAMPEH----PVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQ 310

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +    +AL  F  M   G  P+  + + +L  C     +D G +   +M R       V 
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVF 369

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII-WGTLLGACRKHNAVELAEEVLDCL-- 506
               +I +  + G L +A R+  +   EP  I+ W +++    +H    L E+ L     
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTF--EPKDIVMWNSMITGYAQHG---LGEQALGIFHD 424

Query: 507 IRLKGSDPGNYTMLSNIFAAT 527
           +RL G  P   T +  + A +
Sbjct: 425 MRLAGMSPDGITYIGALTACS 445



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 49/97 (50%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++ A +++     D +    LI+    C  +  A +VF+  +  D+ ++N++I  
Sbjct: 349 LDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITG 408

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
             Q+ L  QA  +F DM+  G+  D  TY   L AC+
Sbjct: 409 YAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACS 445


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 199/582 (34%), Positives = 311/582 (53%), Gaps = 20/582 (3%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            HKC   +   Q  + +I   L    +    L+ S    + +G  + +F+ +  P + L+
Sbjct: 15  FHKCGTFDHLNQTTSILITSGLAHHTFFLSDLLRSAT--KDLGYTLLLFDRLATPYIFLW 72

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN---GKNWFHLVQMIHAL 140
           NT++R+   +S        +  ++  GV  D  T+P LLKA +    +N F      +A 
Sbjct: 73  NTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFSKLRNENPFQF----YAH 128

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G   D FV NSL+ +++ CG V  S  ++LF+   ++D+VSW ++I G ++ G   
Sbjct: 129 IVKFGLDFDAFVQNSLVSAFAHCGYVDCS--RRLFIETAKKDVVSWTALINGCLRNGRAV 186

Query: 201 EARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW-----STM 251
           EA   F EM     E D V+  ++L   A   ++     +         V W     S +
Sbjct: 187 EALECFVEMRSSGVEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSAL 246

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  YSK G  + A  +F+ MP + LV W  +I+GY +    KEA +++ +M   G++P+ 
Sbjct: 247 VDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQ 306

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T+ S L ACA+ G L  G  +H  +++ +   N+ +  ALVDMY+KCG +D A+ VF  
Sbjct: 307 STVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEK 366

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           +  KD+  W AM+ GLAM G    +L LFS+M      P+  TF+GVL AC H G +D+G
Sbjct: 367 LPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGGLVDEG 426

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           ++ F  M  DY + P V+HYGCM+DLLGR+GRL+EA++ ++SMP+EP   +WG L   C 
Sbjct: 427 LELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGALFSGCM 486

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H A EL E + + LI+L+    G Y +L+N+++    W   ANVR  MK     K    
Sbjct: 487 IHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVRRLMKGKGVDKSPAC 546

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           S +EV+  +HEF   D+ H +S  +Y M+ ++   LK   +A
Sbjct: 547 SWIEVNGVIHEFIAFDKSHIESINVYMMLGSVTAQLKLATYA 588


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 188/572 (32%), Positives = 320/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++  Q+I      + +    +++  A CRQ+  A K+F+ + + D+  +NT+I 
Sbjct: 162 DLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIA 221

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN    +A  + L MQ++G   D+ T   +L A        + + IH    + G+  
Sbjct: 222 GFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAK 281

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + +  +L D YSKCG   V  A+ +F  M ++ +VSWNSM+ G V+ GE  +A  +F++
Sbjct: 282 LVNISTALADMYSKCG--SVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEK 339

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGD 260
           M E       V+    L   A  G++     + + +   N+ S     ++++  YSK   
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +++A  +F+ +  +T V W  +I GYA+ G   EA   + +M+  G+KPD  T++S++ A
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            AE  +      +H  I +     N  V  ALVDMY+KCG++  A  +F+ ++ + +++W
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NAM+ G   HG G  AL LF +MK     P+  T++ V+ AC+H+G +D+G+++F SM++
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           DYG+ P ++HYG M+DLLGR+GR+KEA   +++MP+ P   ++G   GAC+ H  +E+ E
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGE 639

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
           +    L  L   + G + +L+NI+A+T  W+KVA VR  M+K   +K  G S VE+ NEV
Sbjct: 640 KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEV 699

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F      HP+S++IY  +  L  ++K  G+
Sbjct: 700 HSFYSGSTTHPQSKRIYAFLEELVYEIKAAGY 731



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 160/590 (27%), Positives = 267/590 (45%), Gaps = 57/590 (9%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C ++ +  Q+   +IK  L  +     KL+S  +    +  A +VF  I D    LY
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALY 115

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           +T+++   +NS    A      M+   V    + + +LLK C         + IH  +  
Sbjct: 116 HTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLIT 175

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG----EL 199
             +  ++F    +++ Y+KC    +  A K+F  M ERD+VSWN++IAG  + G     L
Sbjct: 176 NSFAANVFAMTGVVNMYAKCR--QIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKAL 233

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSWSTMVWG-Y 255
               R+ DE    D+++  T+L   A  G + +   +     +     +V+ ST +   Y
Sbjct: 234 ELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMY 293

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           SK G +E A+L+FD M  KT+V W  ++ GY + G  ++A  ++++M E G+ P   T++
Sbjct: 294 SKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIM 353

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L ACA+ G L  G  VH  +++     + +V N+L+ MY+KC  +D A  +FN +  +
Sbjct: 354 EALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT------HAGFI- 428
             VSWNAM+ G A +G+  +AL  FS MK  G  PD +T V V+ A        HA +I 
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIH 473

Query: 429 --------DKGV-------------------QYFYSMERDYGILPQVEHYGCMIDLLGRS 461
                   DK +                   +  + M  D  ++     +  MID  G  
Sbjct: 474 GLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVIT----WNAMIDGYGTH 529

Query: 462 GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--N 516
           G  + AL L   M    VEPN I + +++ AC     V+        + +  G +P   +
Sbjct: 530 GLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDH 589

Query: 517 YTMLSNIFAATGD----WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           Y  + ++    G     W+ + N+ +    T      GA  +  + EV E
Sbjct: 590 YGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGE 639


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 323/571 (56%), Gaps = 11/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q K++ A++ ++    + Y+   ++S    C  M  A++VF+ ++  +V  +  +I  
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +AF  F  M E G+  +  T+  +L AC+  +     Q I   I + GY  D
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
             V  +L+  Y+KCG   +  A ++F  + ++++V+WN+MI   V+  +   A    + L
Sbjct: 448 DRVRTALLSMYAKCG--SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLA----FELFEKIPHRNIVSWSTMVWGYSKDGDM 261
             E  + ++ ++ +IL+    +  + L     F + +     ++   + +V  +   GD+
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             AK LF+ MP + LV W  II+G+ + G  + A   +  M+E+G+KPD  T   +L AC
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G ++HA I +  F C+  V   L+ MY KCGS+++A  VF+ + KK++ SW 
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWT 685

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G A HG+G++AL LF +M+ EG  PD  TFVG L AC HAG I++G+ +F SM ++
Sbjct: 686 SMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KE 744

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           + I P++EHYGCM+DL GR+G L EA+  +  M VEP++ +WG LLGAC+ H  VELAE+
Sbjct: 745 FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEK 804

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
                + L  +D G + +LSNI+AA G W +VA +R  M      K  G S +EVD +VH
Sbjct: 805 AAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F   D+ HP++E+I+  +  L  +++ +G+
Sbjct: 865 TFYSDDKTHPQTEEIHAELERLHMEMRQLGY 895



 Score =  229 bits (585), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 256/498 (51%), Gaps = 20/498 (4%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R+     LQ   K KNL   ++++  I K  +Q D ++   LI+  A C     A ++F+
Sbjct: 110 RQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFD 169

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           D+++ DV+ +N L+   VQ+ L  +AF++   M +  V  D  T+  +L AC        
Sbjct: 170 DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK 229

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + ++ LI K G+  D+FV  +LI+ + KCG +G   A K+F ++  RD+V+W SMI GL
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGD--ATKVFDNLPTRDLVTWTSMITGL 287

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSW 248
            + G   +A  LF  M E     D V++ ++L    +A     A E  +K+  R   V W
Sbjct: 288 ARHGRFKQACNLFQRMEEEGVQPDKVAFVSLL----RACNHPEALEQGKKVHARMKEVGW 343

Query: 249 STMVW-------GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            T ++        Y+K G ME A  +FD +  + +V WT +I+G+A+ G   EA   +++
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M E+G++P+  T +SIL AC+    L  G ++   I +  +  +  V  AL+ MYAKCGS
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L +A  VF  ++K+++V+WNAM+     H Q + AL  F  +  EG  P+  TF  +L  
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C  +  ++ G ++ + +    G+   +     ++ +    G L  A  L   MP + + +
Sbjct: 524 CKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLV 581

Query: 482 IWGTLLGACRKHNAVELA 499
            W T++    +H   ++A
Sbjct: 582 SWNTIIAGFVQHGKNQVA 599



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 158/570 (27%), Positives = 271/570 (47%), Gaps = 44/570 (7%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           +R     L      +N+++ ++L+  I+K     D ++   LI+    C  +G A KVF+
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           ++   D+  + ++I    ++    QA  +F  M+E+GV  D   +  LL+ACN       
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + + G+  +I+V  +++  Y+KCG +  +L  ++F  +  R++VSW +MIAG 
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDAL--EVFDLVKGRNVVSWTAMIAGF 388

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-- 247
            + G + EA   F++M E     + V++ +IL   +    +    ++ + I      S  
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448

Query: 248 --WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              + ++  Y+K G ++ A  +F+++  + +V W  +I+ Y +      A   +  + + 
Sbjct: 449 RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+KP+  T  SIL  C  S  L LG  VH  I K   + + +V NALV M+  CG L +A
Sbjct: 509 GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC--- 422
            ++FN M K+DLVSWN ++ G   HG+ + A   F  M++ G  PDK TF G+L AC   
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASP 628

Query: 423 -------------THAGF-----IDKGVQYFY----SMERDYGI---LPQ--VEHYGCMI 455
                        T A F     +  G+   Y    S+E  + +   LP+  V  +  MI
Sbjct: 629 EALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMI 688

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSD 513
               + GR KEAL L   M  E     W T +GA        L EE L     +K    +
Sbjct: 689 TGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIE 748

Query: 514 P--GNYTMLSNIFAATGDWNKVANVRLQMK 541
           P   +Y  + ++F   G  N+     ++M+
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQ 778



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 199/393 (50%), Gaps = 48/393 (12%)

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF--- 237
           +D    N+++  L K G+ +EA ++ + +   D+         Y+   ++ + F+     
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERV---DSSHIQIYRQTYSALLQLCIKFKNLGDG 129

Query: 238 EKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           E+I +         +I  W+T++  Y+K G+   AK +FD M  K +  W +++ GY + 
Sbjct: 130 ERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+ +EA +L++QM +  +KPD  T +S+L ACA++  +  G +++  I K  +  +  V 
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            AL++M+ KCG + +A  VF+ +  +DLV+W +M+ GLA HG+ ++A  LF RM++EG  
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMER---------DYGILPQVEHYGCMIDLL-- 458
           PDK  FV +L AC H   +++G +    M+             IL      G M D L  
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 459 -----GRS--------------GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAV 496
                GR+              GR+ EA      M    +EPN + + ++LGAC   +A+
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 497 ELAEEVLDCLIRLK-GSDPGNYTMLSNIFAATG 528
           +  +++ D +I    GSD    T L +++A  G
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG 462


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 190/539 (35%), Positives = 305/539 (56%), Gaps = 11/539 (2%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           LIS     R +  A K F+ + + +V  +  ++R  VQ  L ++A  +F  M EK V + 
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSW 143

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
                 L++         L  ++           D+    ++I  Y + G   ++ A++L
Sbjct: 144 TVMLGGLIQVRRIDEARGLFDIMPV--------KDVVARTNMISGYCQEG--RLAEAREL 193

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
           F  M  R+++SW +MI+G V+ G++  AR+LF+ MPE++ VSW  +L GY + G +  A 
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEAS 253

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           ELF+ +P + +V+ + M+ G+ ++G++  A+ +FD++  K    W+ +I  Y  KG   E
Sbjct: 254 ELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVE 313

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L+  M+  G++ +  +LIS+L+ CA    L  G +VHA + K +F  +  V + L+ 
Sbjct: 314 ALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLIT 373

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCG L  A  +F+  + KD+V WN+++ G A HG  E+AL +F  M   G   D  T
Sbjct: 374 MYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVT 433

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           FVGVL AC++ G + +G++ F SM+  Y + P+ EHY CM+DLLGR+G + +A+ L+Q M
Sbjct: 434 FVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKM 493

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           PVE +AIIWG LLGACR H  + LAE     L++L+  + G Y +LSNI+A+ G W  VA
Sbjct: 494 PVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVA 553

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFS-VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +R  M+  +  K  G S +EV+  VH F+      HP+   I +M+  L   L+  G+
Sbjct: 554 ELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGY 612



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 190/393 (48%), Gaps = 35/393 (8%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           NS I  Y++ G   +  A+++F  M ++ IVSWNSM+AG  +     EAR LFD+MPER+
Sbjct: 20  NSQIARYARIG--QIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERN 77

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
            VSWN ++ GY K   ++ A + F+ +P RN+VSW+ MV GY ++G +  A+ LF +MP 
Sbjct: 78  TVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPE 137

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           K +V WT+++ G  +     EA  L+D M       D     ++++   + G L    ++
Sbjct: 138 KNVVSWTVMLGGLIQVRRIDEARGLFDIMP----VKDVVARTNMISGYCQEGRLAEAREL 193

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
              + +     N      ++  Y + G +D A  +F  M +K+ VSW AML G    G+ 
Sbjct: 194 FDEMPRR----NVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRI 249

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF-----IDKGVQYFYSM-ERDYGILPQ 447
           E+A  LF  M      P K     V C     GF     + K  Q F  + E+D G    
Sbjct: 250 EEASELFDAM------PVKAV---VACNAMILGFGQNGEVAKARQVFDQIREKDDGT--- 297

Query: 448 VEHYGCMIDLLGRSGRLKEALR---LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
              +  MI +  R G   EAL    L+Q   V+ N     ++L  C    +++   +V  
Sbjct: 298 ---WSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHA 354

Query: 505 CLIRLK-GSDPGNYTMLSNIFAATGDWNKVANV 536
            L++ +  SD    ++L  ++   GD  K   +
Sbjct: 355 ELVKSQFDSDVFVASVLITMYVKCGDLVKARQI 387



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 138/258 (53%), Gaps = 18/258 (6%)

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +++NS IA   + G++  ARR+FDEMP++  VSWN+++ GY +      A  LF+K+P R
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           N VSW+ ++ GY K+  +  A+  FD MP + +V WT ++ GY ++G+  EA  L+ QM 
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 304 EAGLKPDD---GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           E  +       G LI +       GL  + M V   + +      TN    ++  Y + G
Sbjct: 137 EKNVVSWTVMLGGLIQVRRIDEARGLFDI-MPVKDVVAR------TN----MISGYCQEG 185

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            L  A  +F+ M +++++SW  M+ G   +GQ + A  LF  M ++    ++ ++  +L 
Sbjct: 186 RLAEARELFDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVMPEK----NEVSWTAMLM 241

Query: 421 ACTHAGFIDKGVQYFYSM 438
             T  G I++  + F +M
Sbjct: 242 GYTQGGRIEEASELFDAM 259



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 182/411 (44%), Gaps = 86/411 (20%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L + + +++ + LF  I+ +   +D      +IS      ++  A ++F+++   +V
Sbjct: 147 LGGLIQVRRIDEARGLF-DIMPV---KDVVARTNMISGYCQEGRLAEARELFDEMPRRNV 202

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             + T+I   VQN     A ++F  M EK                N  +W          
Sbjct: 203 ISWTTMISGYVQNGQVDVARKLFEVMPEK----------------NEVSW---------- 236

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
                         +++  Y++ G   +  A +LF +M  + +V+ N+MI G  + GE++
Sbjct: 237 -------------TAMLMGYTQGG--RIEEASELFDAMPVKAVVACNAMILGFGQNGEVA 281

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS------------- 247
           +AR++FD++ E+D  +W+ ++  Y + G    A  LF  +    + S             
Sbjct: 282 KARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCA 341

Query: 248 --------------------------WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                                      S ++  Y K GD+  A+ +FDR   K +V W  
Sbjct: 342 SLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNS 401

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKY 340
           II+GYA+ G+ +EA +++ +M  +G+  D  T + +L+AC+ +G +  G+++  S+ +KY
Sbjct: 402 IITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKY 461

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
             +  T     +VD+  + G +++AM +   M  + D + W A+L     H
Sbjct: 462 LVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTH 512



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 130/293 (44%), Gaps = 49/293 (16%)

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
           A+++N+ +  YA+ G++  A  +F+++P + IVSW++MV GY ++     A+ LFD+MP 
Sbjct: 16  AIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE 75

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           +  V W  +ISGY +  M  EA + +D M E                             
Sbjct: 76  RNTVSWNGLISGYVKNRMVSEARKAFDTMPER---------------------------- 107

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
                      N     A+V  Y + G +  A ++F  M +K++VSW  ML GL    + 
Sbjct: 108 -----------NVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRI 156

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++A GLF  M  +    D      ++      G + +  + F  M R       V  +  
Sbjct: 157 DEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARELFDEMPRR-----NVISWTT 207

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           MI    ++G++  A +L + MP E N + W  +L    +   +E A E+ D +
Sbjct: 208 MISGYVQNGQVDVARKLFEVMP-EKNEVSWTAMLMGYTQGGRIEEASELFDAM 259


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 196/574 (34%), Positives = 293/574 (51%), Gaps = 79/574 (13%)

Query: 61  LCRQMGL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTY 118
           LC Q  L  AI++ + +  P    Y+TL++ C+Q           L   ++G+       
Sbjct: 68  LCEQKRLREAIQILDHVDRPSAATYSTLLQLCLQ-----------LRALDEGM------- 109

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
                             +HA     G+   + + N ++D Y KC    +  AK+LF  M
Sbjct: 110 -----------------KVHAHTKTSGFVPGVVISNRILDMYIKCN--SLVNAKRLFDEM 150

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE 238
            ERD+ SWN MI+G  K G L EAR+LFD+M ERD  SW  +  GY +  +   A ELF 
Sbjct: 151 AERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEALELFR 210

Query: 239 KIP-HRNI---------------------------------------VSWSTMVWGYSKD 258
            +  H N                                        V WS +   Y K 
Sbjct: 211 AMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKC 270

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +  A+ +FD+   + +V WT +I  Y ++G  +E   L+  + ++G+ P++ T   +L
Sbjct: 271 GSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVL 330

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA+     LG +VH  + +  F  ++   + LV MY KCG++ NA  VFNGM + DLV
Sbjct: 331 NACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGMPRPDLV 390

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW +++ G A +GQ ++AL  F  +   G  PD  TFVGVL ACTHAG +DKG++YF S+
Sbjct: 391 SWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSI 450

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           +  +G+    +HY C+IDLL RSGRL+EA  ++  MP+EP+  +W +LLG CR H  ++L
Sbjct: 451 KEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRIHGNLKL 510

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           A+   + L  ++  +P  YT L+NI+A  G W  VA VR  M      K  G S +E+  
Sbjct: 511 AKRAAEALFEIEPENPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGLSWIEIKR 570

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EVH F V D  H KS++I++ +  L K +K  G+
Sbjct: 571 EVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGY 604



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 181/377 (48%), Gaps = 17/377 (4%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC +L   K+LF ++     +RD      +IS  A   ++  A K+F+ + + D   +  
Sbjct: 136 KCNSLVNAKRLFDEMA----ERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTA 191

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           +    V++  + +A  +F  MQ    F  N FT    L A       HL + IH  I + 
Sbjct: 192 MTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRI 251

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   D  V ++L D Y KCG +G   A+ +F    +RD+VSW +MI    K G   E   
Sbjct: 252 GLDLDGVVWSALSDMYGKCGSIGE--ARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFA 309

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMVWGYS 256
           LF ++ +           G   A   + A EL +++           +  + ST+V  Y+
Sbjct: 310 LFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYT 369

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K G+++ A+ +F+ MP   LV WT +ISGYA+ G   EA + ++ + ++G +PD  T + 
Sbjct: 370 KCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVG 429

Query: 317 ILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TK 374
           +L+AC  +GL+  G++   SI  K+      +    L+D+ ++ G L  A  + + M  +
Sbjct: 430 VLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIE 489

Query: 375 KDLVSWNAMLYGLAMHG 391
            D   W ++L G  +HG
Sbjct: 490 PDKFLWASLLGGCRIHG 506



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 173/404 (42%), Gaps = 52/404 (12%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L+  K++   I+++ L  D  +   L      C  +G A  +F+   D DV  +  +I
Sbjct: 236 QSLHLGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMI 295

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               +     + F +F D+ + G++ + FT+  +L AC       L + +H  + + G+ 
Sbjct: 296 DRYFKEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFD 355

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
              F  ++L+  Y+KCG   +  A+++F  M   D+VSW S+I+G  + G+  EA + F+
Sbjct: 356 PSSFAASTLVHMYTKCG--NIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFE 413

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            +     + D +++  +L     AG ++   E F+ I  ++         G +   D   
Sbjct: 414 LLLKSGTQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKH---------GLTHTADH-- 462

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
                          +  +I   +  G  +EA  + D+M    ++PD     S+L  C  
Sbjct: 463 ---------------YACLIDLLSRSGRLQEAEDIIDKMP---IEPDKFLWASLLGGCRI 504

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV-----FNGMTKKDLV 378
            G L L  +   ++ +   + N      L ++YA  G       V       G+ KK  +
Sbjct: 505 HGNLKLAKRAAEALFEIEPE-NPATYTTLANIYATAGLWGGVAEVRKVMDARGVVKKPGL 563

Query: 379 SW-------NAMLYGLAMHGQGEKA---LGLFS-RMKDEGFGPD 411
           SW       +  L G   H + ++    LG  S RMK+EG+ PD
Sbjct: 564 SWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRMKEEGYVPD 607


>gi|356545987|ref|XP_003541414.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 613

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 203/602 (33%), Positives = 324/602 (53%), Gaps = 52/602 (8%)

Query: 46  QRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
             DP++   LIS  A      L  +  +F  I +PD+ L+N +IRA   +     A  ++
Sbjct: 7   HHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALSLY 66

Query: 104 LDMQEKG--VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
             M      +F D FT+PFLLK+C   +   L   +H  ++K G+  ++FV N+L+  Y 
Sbjct: 67  KKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYF 126

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSW 217
             G      A ++F     RD VS+N++I GLV+ G    + R+F EM     E D  ++
Sbjct: 127 VFG--DARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTF 184

Query: 218 -------------------------------------NTILDGYAKAGEMNLAFELFEKI 240
                                                N ++D YAK G + +A  +    
Sbjct: 185 VALLSACSLLEDRGIGRVVHGLVYRKLGCFGENELLVNALVDMYAKCGCLEVAERVVRNG 244

Query: 241 PHRN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
             ++ + +W+++V  Y+  G++E+A+ LFD+M  + +V WT +ISGY   G  +EA  L+
Sbjct: 245 NGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELF 304

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC--NTNVCNALVDMYA 357
            ++E+ G++PD+  +++ L+ACA  G L LG ++H   ++  ++C  N     A+VDMYA
Sbjct: 305 VELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYA 364

Query: 358 KCGSLDNAMSVFNGMTK--KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           KCGS++ A+ VF   +   K    +N+++ GLA HG+GE A+ LF  M+  G  PD+ T+
Sbjct: 365 KCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTY 424

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           V +LCAC H+G +D G + F SM  +YG+ PQ+EHYGCM+DLLGR+G L EA  L+Q+MP
Sbjct: 425 VALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMP 484

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
            + NA+IW  LL AC+    VELA      L+ ++      Y MLSN+       ++ A+
Sbjct: 485 FKANAVIWRALLSACKVDGDVELARLASQELLAMENDHGARYVMLSNMLTLMDKHDEAAS 544

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VR  +     QKP G S VE++  +H+F   D+ HP+++    M+  +   LK +GH+  
Sbjct: 545 VRRAIDNVGIQKPPGWSHVEMNGTLHKFLAGDKSHPEAKATEFMLRDIDMGLKSIGHSIS 604

Query: 596 LS 597
           +S
Sbjct: 605 VS 606



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 194/423 (45%), Gaps = 51/423 (12%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L+  +   Q+   + K   + + ++   L+    +      A +VF++    D 
Sbjct: 87  LKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQVYFVFGDARNACRVFDESPVRDS 146

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YNT+I   V+      + R+F +M+   V  D +T+  LL AC+      + +++H L
Sbjct: 147 VSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTFVALLSACSLLEDRGIGRVVHGL 206

Query: 141 IY-KCGYFGD-IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           +Y K G FG+   + N+L+D Y+KCG + V+  + +    G+  + +W S+++     GE
Sbjct: 207 VYRKLGCFGENELLVNALVDMYAKCGCLEVA-ERVVRNGNGKSGVAAWTSLVSAYALRGE 265

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIV------ 246
           +  ARRLFD+M ERD VSW  ++ GY  AG    A ELF ++      P   +V      
Sbjct: 266 VEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALELFVELEDLGMEPDEVVVVAALSA 325

Query: 247 --------------------SWS---------TMVWGYSKDGDMEMAKLLFDRMP--AKT 275
                               SW           +V  Y+K G +E A  +F +     KT
Sbjct: 326 CARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDMYAKCGSIEAALDVFLKTSDDMKT 385

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
              +  I+SG A  G  + A  L+++M   GL+PD+ T +++L AC  SGL+  G ++  
Sbjct: 386 TFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEVTYVALLCACGHSGLVDHGKRLFE 445

Query: 336 S-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQG 393
           S +++Y           +VD+  + G L+ A  +   M  K + V W A+L    + G  
Sbjct: 446 SMLSEYGVNPQMEHYGCMVDLLGRAGHLNEAYLLIQNMPFKANAVIWRALLSACKVDGDV 505

Query: 394 EKA 396
           E A
Sbjct: 506 ELA 508



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 188/473 (39%), Gaps = 87/473 (18%)

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   D F+   LI  ++      +  +  LF  +   D+  +N +I           A  
Sbjct: 5   GRHHDPFLMTPLISFFAAANSNALHHSHLLFTQIPNPDLFLFNLIIRAFSLSQTPHNALS 64

Query: 205 LFDEMPER------DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWG 254
           L+ +M         D  ++  +L   AK     L  ++    F+     N+   + ++  
Sbjct: 65  LYKKMLSSSPPIFPDTFTFPFLLKSCAKLSLPRLGLQVHTHVFKSGFESNVFVVNALLQV 124

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y   GD   A  +FD  P +  V +  +I+G    G A  + R++ +M    ++PD+ T 
Sbjct: 125 YFVFGDARNACRVFDESPVRDSVSYNTVINGLVRAGRAGCSMRIFAEMRGGFVEPDEYTF 184

Query: 315 ISILAACAESGLLGLGMKVHASINKYR----FKCNTNVCNALVDMYAKCGSLDNAMSV-- 368
           +++L+AC+     G+G  VH  +  YR    F  N  + NALVDMYAKCG L+ A  V  
Sbjct: 185 VALLSACSLLEDRGIGRVVHGLV--YRKLGCFGENELLVNALVDMYAKCGCLEVAERVVR 242

Query: 369 ------------------------------FNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
                                         F+ M ++D+VSW AM+ G    G  ++AL 
Sbjct: 243 NGNGKSGVAAWTSLVSAYALRGEVEVARRLFDQMGERDVVSWTAMISGYCHAGCFQEALE 302

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD----------------- 441
           LF  ++D G  PD+   V  L AC   G ++ G +  +  +RD                 
Sbjct: 303 LFVELEDLGMEPDEVVVVAALSACARLGALELGRRIHHKYDRDSWQCGHNRGFTCAVVDM 362

Query: 442 YGILPQVEH-----------------YGCMIDLLGRSGRLKEALRLVQSMP---VEPNAI 481
           Y     +E                  Y  ++  L   GR + A+ L + M    +EP+ +
Sbjct: 363 YAKCGSIEAALDVFLKTSDDMKTTFLYNSIMSGLAHHGRGEHAMALFEEMRLVGLEPDEV 422

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATGDWNK 532
            +  LL AC     V+  + + + ++   G +P   +Y  + ++    G  N+
Sbjct: 423 TYVALLCACGHSGLVDHGKRLFESMLSEYGVNPQMEHYGCMVDLLGRAGHLNE 475


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 205/631 (32%), Positives = 334/631 (52%), Gaps = 53/631 (8%)

Query: 9   TWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           T FS    ++ +L +++ KC  L   +++F  +     QR+ +    ++ +L     +  
Sbjct: 48  TQFSSEIFIQNRLVDVYGKCGFLEDARKVFDHM----QQRNTFSWNAVLGALTKFGALDE 103

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+ +F  + + D   +N ++    Q     +A R  +DM  +    + +++   L AC G
Sbjct: 104 ALNLFKCMPERDQCSWNAMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAG 163

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                +   IH LI K  Y  D+++ ++L+D YSKC VV    A++ F  M  R+IVSWN
Sbjct: 164 LMDLSIGVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVAS--AQRAFDDMDVRNIVSWN 221

Query: 188 SMIAGLVKGGELSEARRLFDEM------PER----------------------------- 212
           S+I    + G   +A  +F  M      P+                              
Sbjct: 222 SLITCYEQNGPAGKALEVFVRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKH 281

Query: 213 -----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                D V  N ++D YAK   +N A  +F+++P R++VS ++MV GY+K   ++ A+L+
Sbjct: 282 DKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLM 341

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  M  + +V W  +I+GY + G  +EA RL+  ++   + P   T  ++L ACA    L
Sbjct: 342 FSNMMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADL 401

Query: 328 GLGMKVHASINKYRF------KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            LG + H  I K+ F        +  V N+L+DMY KCG +++   VF  M ++D VSWN
Sbjct: 402 KLGRQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWN 461

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ G A +G G +AL +F  M   G  PD  T +GVL AC+HAG +++G  YF SM  +
Sbjct: 462 AMIVGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIE 521

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +G++P  +HY CM+DLLGR+G L EA  L+Q+MP+EP+A++WG+LL AC+ H  + L + 
Sbjct: 522 HGLVPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKY 581

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           V + L+ +   + G Y +LSN++A  G W  V  VR QM++    K  G S + + + +H
Sbjct: 582 VAERLLEIDPLNSGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHLH 641

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ HP  + IY ++  L + +K VG+
Sbjct: 642 VFMVKDKRHPHKKDIYLILKILTEQMKRVGY 672



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/500 (27%), Positives = 229/500 (45%), Gaps = 96/500 (19%)

Query: 112 FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171
           F D+  +  LL  C         +++HA I K  +  +IF+ N L+D Y KCG   +  A
Sbjct: 16  FLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGF--LEDA 73

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK----- 226
           +K+F  M +R+  SWN+++  L K G L EA  LF  MPERD  SWN ++ G+A+     
Sbjct: 74  RKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFE 133

Query: 227 ----------------------------AGEMNLAF-----ELFEKIPHR-NIVSWSTMV 252
                                       AG M+L+       L  K  +  ++   S +V
Sbjct: 134 EALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLDVYMGSALV 193

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             YSK   +  A+  FD M  + +V W  +I+ Y + G A +A  ++ +M   G++PD+ 
Sbjct: 194 DMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPDEI 253

Query: 313 TLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFN- 370
           TL S+ +ACA    +  G+++HA + K+ +++ +  + NALVDMYAKC  ++ A  VF+ 
Sbjct: 254 TLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLVFDR 313

Query: 371 ------------------------------GMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
                                          M ++++VSWNA++ G   +G+ E+A+ LF
Sbjct: 314 MPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAVRLF 373

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ---------YFYSMERDYGILPQVEHY 451
             +K E   P  YTF  +L AC +   +  G Q         +++    D  I       
Sbjct: 374 LLLKRESIWPTHYTFGNLLNACANLADLKLGRQAHTHILKHGFWFKSGEDSDIFVG---- 429

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLI 507
             +ID+  + G L E  RLV    +E + + W  ++    ++     A+E+  E+L    
Sbjct: 430 NSLIDMYMKCG-LVEDGRLVFERMLERDNVSWNAMIVGYAQNGYGTEALEIFREML---- 484

Query: 508 RLKGSDPGNYTMLSNIFAAT 527
            + G  P + TM+  + A +
Sbjct: 485 -VSGERPDHVTMIGVLSACS 503



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 151/311 (48%), Gaps = 4/311 (1%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR----RLFDEMPERDAVSWNTILDGYA 225
           L +K+   +   D   +  ++   VK   + EAR    R+       +    N ++D Y 
Sbjct: 6   LVRKVVGDLSFLDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYG 65

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           K G +  A ++F+ +  RN  SW+ ++   +K G ++ A  LF  MP +    W  ++SG
Sbjct: 66  KCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSG 125

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           +A++   +EA R    M       ++ +  S L+ACA    L +G+++H  I K R+  +
Sbjct: 126 FAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKSRYSLD 185

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             + +ALVDMY+KC  + +A   F+ M  +++VSWN+++     +G   KAL +F RM +
Sbjct: 186 VYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMN 245

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
            G  PD+ T   V  AC     I +G+Q    + +       +     ++D+  +  R+ 
Sbjct: 246 CGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVN 305

Query: 466 EALRLVQSMPV 476
           EA  +   MP+
Sbjct: 306 EARLVFDRMPL 316


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 187/540 (34%), Positives = 308/540 (57%), Gaps = 13/540 (2%)

Query: 64  QMGLAIKVFNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPF 120
            +  AI++F     P      YN LIR+ ++      A  +F++M  +  V  D  T   
Sbjct: 117 HLSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVAN 176

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
            +K+C+      + + + A  +K G+  D FV NSLI  Y+ CG   V  A  LF ++  
Sbjct: 177 TVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCG--DVVAAHVLFHTVQV 234

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL 236
           + +++WN+MIAG VK G+  E   +F  M E     D V+  ++     + G+ NL   +
Sbjct: 235 KGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWI 294

Query: 237 FEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
            E    + ++      + +V  Y+K G+++ A+ LFDRM ++ +V W+ +ISGY +    
Sbjct: 295 AEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRC 354

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           +EA  ++++M+   + P+D T++S+L+ACA  G L  G  VH+ I +        +  AL
Sbjct: 355 REALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTAL 414

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VD YAKCG + +A+  F  M  ++  +W A++ G+A +G+  +AL LFS M +    P  
Sbjct: 415 VDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTD 474

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF+GVL AC+H   +++G ++F SM +DYGI P++EHYGCM+DLLGR+G + EA + ++
Sbjct: 475 VTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIR 534

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           +MP+EPNA++W  LL AC  H  VE+ EE L  ++ L     GNY +LSN +A+ G W  
Sbjct: 535 NMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKN 594

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            A VR +MK+   +K  G S +E++  + EF   D  HP+  +IY+ ++ + +++K VG+
Sbjct: 595 AAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGY 654


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 323/571 (56%), Gaps = 11/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q K++ A++ ++    + Y+   ++S    C  M  A++VF+ ++  +V  +  +I  
Sbjct: 328 LEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAG 387

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +AF  F  M E G+  +  T+  +L AC+  +     Q I   I + GY  D
Sbjct: 388 FAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSD 447

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
             V  +L+  Y+KCG   +  A ++F  + ++++V+WN+MI   V+  +   A    + L
Sbjct: 448 DRVRTALLSMYAKCG--SLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLA----FELFEKIPHRNIVSWSTMVWGYSKDGDM 261
             E  + ++ ++ +IL+    +  + L     F + +     ++   + +V  +   GD+
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             AK LF+ MP + LV W  II+G+ + G  + A   +  M+E+G+KPD  T   +L AC
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G ++HA I +  F C+  V   L+ MY KCGS+++A  VF+ + KK++ SW 
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWT 685

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G A HG+G++AL LF +M+ EG  PD  TFVG L AC HAG I++G+ +F SM ++
Sbjct: 686 SMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KE 744

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           + I P++EHYGCM+DL GR+G L EA+  +  M VEP++ +WG LLGAC+ H  VELAE+
Sbjct: 745 FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEK 804

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
                + L  +D G + +LSNI+AA G W +VA +R  M      K  G S +EVD +VH
Sbjct: 805 AAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F   D+ HP++E+I+  +  L  +++ +G+
Sbjct: 865 TFYSDDKTHPQTEEIHAELERLHMEMRQLGY 895



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 150/498 (30%), Positives = 256/498 (51%), Gaps = 20/498 (4%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R+     LQ   K KNL   ++++  I K  +Q D ++   LI+  A C     A ++F+
Sbjct: 110 RQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFD 169

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           D+++ DV+ +N L+   VQ+ L  +AF++   M +  V  D  T+  +L AC        
Sbjct: 170 DMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDK 229

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + ++ LI K G+  D+FV  +LI+ + KCG +G   A K+F ++  RD+V+W SMI GL
Sbjct: 230 GRELYNLILKAGWDTDLFVGTALINMHIKCGDIGD--ATKVFDNLPTRDLVTWTSMITGL 287

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSW 248
            + G   +A  LF  M E     D V++ ++L    +A     A E  +K+  R   V W
Sbjct: 288 ARHGRFKQACNLFQRMEEEGVQPDKVAFVSLL----RACNHPEALEQGKKVHARMKEVGW 343

Query: 249 STMVW-------GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            T ++        Y+K G ME A  +FD +  + +V WT +I+G+A+ G   EA   +++
Sbjct: 344 DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNK 403

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M E+G++P+  T +SIL AC+    L  G ++   I +  +  +  V  AL+ MYAKCGS
Sbjct: 404 MIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           L +A  VF  ++K+++V+WNAM+     H Q + AL  F  +  EG  P+  TF  +L  
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C  +  ++ G ++ + +    G+   +     ++ +    G L  A  L   MP + + +
Sbjct: 524 CKSSDSLELG-KWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMP-KRDLV 581

Query: 482 IWGTLLGACRKHNAVELA 499
            W T++    +H   ++A
Sbjct: 582 SWNTIIAGFVQHGKNQVA 599



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 158/570 (27%), Positives = 271/570 (47%), Gaps = 44/570 (7%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           +R     L      +N+++ ++L+  I+K     D ++   LI+    C  +G A KVF+
Sbjct: 211 KRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFD 270

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           ++   D+  + ++I    ++    QA  +F  M+E+GV  D   +  LL+ACN       
Sbjct: 271 NLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQ 330

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + + G+  +I+V  +++  Y+KCG +  +L  ++F  +  R++VSW +MIAG 
Sbjct: 331 GKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDAL--EVFDLVKGRNVVSWTAMIAGF 388

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-- 247
            + G + EA   F++M E     + V++ +IL   +    +    ++ + I      S  
Sbjct: 389 AQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDD 448

Query: 248 --WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              + ++  Y+K G ++ A  +F+++  + +V W  +I+ Y +      A   +  + + 
Sbjct: 449 RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKE 508

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+KP+  T  SIL  C  S  L LG  VH  I K   + + +V NALV M+  CG L +A
Sbjct: 509 GIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSA 568

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC--- 422
            ++FN M K+DLVSWN ++ G   HG+ + A   F  M++ G  PDK TF G+L AC   
Sbjct: 569 KNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASP 628

Query: 423 -------------THAGF-----IDKGVQYFY----SMERDYGI---LPQ--VEHYGCMI 455
                        T A F     +  G+   Y    S+E  + +   LP+  V  +  MI
Sbjct: 629 EALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMI 688

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSD 513
               + GR KEAL L   M  E     W T +GA        L EE L     +K    +
Sbjct: 689 AGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSMKEFNIE 748

Query: 514 P--GNYTMLSNIFAATGDWNKVANVRLQMK 541
           P   +Y  + ++F   G  N+     ++M+
Sbjct: 749 PRMEHYGCMVDLFGRAGLLNEAVEFIIKMQ 778



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 198/393 (50%), Gaps = 48/393 (12%)

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF--- 237
           +D    N+++  L K G+ +EA ++ + +   D+         Y+   ++ + F+     
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERV---DSSHIQIYRQTYSALLQLCIKFKNLGDG 129

Query: 238 EKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           E+I +         +I   +T++  Y+K G+   AK +FD M  K +  W +++ GY + 
Sbjct: 130 ERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQH 189

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+ +EA +L++QM +  +KPD  T +S+L ACA++  +  G +++  I K  +  +  V 
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            AL++M+ KCG + +A  VF+ +  +DLV+W +M+ GLA HG+ ++A  LF RM++EG  
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMER---------DYGILPQVEHYGCMIDLL-- 458
           PDK  FV +L AC H   +++G +    M+             IL      G M D L  
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 459 -----GRS--------------GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAV 496
                GR+              GR+ EA      M    +EPN + + ++LGAC   +A+
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 497 ELAEEVLDCLIRLK-GSDPGNYTMLSNIFAATG 528
           +  +++ D +I    GSD    T L +++A  G
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCG 462


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 313/571 (54%), Gaps = 12/571 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL A  +K +   D  +    +   A C +M  A KVFN   +P    +N LI    +  
Sbjct: 292 QLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQD 351

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFVP 153
              +A  +F  +Q+  +  D  +    L AC+  K +   +Q+ H L  KCG   +I V 
Sbjct: 352 QVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQL-HGLAVKCGLDFNICVA 410

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           N+++D Y+KCG   +  A  +F  M  +D VSWN++IA   +   + E   LF  M    
Sbjct: 411 NTILDMYAKCG--ALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRST 468

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSW---STMVWGYSKDGDMEMAK 265
            E D  ++ +++   A    +N   E+  ++    + + W   S ++  Y K G +  A+
Sbjct: 469 MEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAE 528

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            + +R+  +T V W  IISG++ +   + A   + +M + G+ PD+ T  ++L  CA   
Sbjct: 529 KIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLA 588

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            + LG ++H  I K +   +  + + +VDMY+KCG++ ++  +F    K+D V+W+AM+ 
Sbjct: 589 TVELGKQIHGQILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMIC 648

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
             A HG GE A+ LF  M+ +   P+   F+ VL AC H GF+DKG+ YF  M   YG+ 
Sbjct: 649 AYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLD 708

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           PQ+EHY CM+DLLGRSG++ EAL L++SMP E + +IW TLLG CR    VE+AE+  + 
Sbjct: 709 PQMEHYSCMVDLLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANS 768

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L++L   D   Y +LSN++A  G W +VA +R  MK  + +K  G S ++V +EVH F V
Sbjct: 769 LLQLDPQDSSAYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWIQVRDEVHAFLV 828

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            D+ HP+SE+IYQ  + L  ++K  G+  ++
Sbjct: 829 GDKAHPRSEEIYQQTHLLVDEMKWDGYVPEI 859



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 125/457 (27%), Positives = 202/457 (44%), Gaps = 48/457 (10%)

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
           T   T+  + + C+     +  +  HA I   G+   +FV N L+  Y KC  + ++ A 
Sbjct: 36  TKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKC--LNLNYAF 93

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
            +F  M +RD++SWN+MI G    G +  A+ LFD MPERD VSWN++L  Y + G    
Sbjct: 94  NVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRK 153

Query: 233 AFELFEK-----IPH----------------------------------RNIVSWSTMVW 253
           + E+F K     I H                                   ++V+ + +V 
Sbjct: 154 SIEIFTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVD 213

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YS    ++ A  +F  MP +  V W+ +I+GY       E  +LY  M + G+     T
Sbjct: 214 MYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQAT 273

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
             S   +CA      LG ++HA   K  F  +  V  A +DMYAKC  + +A  VFN   
Sbjct: 274 FASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFP 333

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
                S NA++ G A   Q  +AL +F  ++      D+ +  G L AC+      +G+Q
Sbjct: 334 NPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQ 393

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             + +    G+   +     ++D+  + G L EA  +   M ++ +A+ W  ++ A   H
Sbjct: 394 -LHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIK-DAVSWNAIIAA---H 448

Query: 494 NAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATG 528
              E  EE L   + +  S  +P +YT  S + A  G
Sbjct: 449 EQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAG 485



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 143/526 (27%), Positives = 239/526 (45%), Gaps = 35/526 (6%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           PT F    LL    Q   KC NLN    +F ++     QRD      +I   A    M  
Sbjct: 71  PTVFVSNCLL----QFYCKCLNLNYAFNVFDKMP----QRDVISWNTMIFGYAGVGNMEF 122

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F+ + + DV  +N+++   +QN  + ++  +F  M+   +  D  T+  +LKAC G
Sbjct: 123 AQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTG 182

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              + L   +H L  + G+  D+    +L+D YS C    +  A  +F  M ER+ V W+
Sbjct: 183 IEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCK--KLDHAFNIFCEMPERNSVCWS 240

Query: 188 SMIAGLVKGGELSEARRLFDEM-PERDAVSWNTILDGYAKAGEMNLAFELFEKIP----- 241
           ++IAG V+    +E  +L+  M  E   VS  T    +     ++ AFEL  ++      
Sbjct: 241 AVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLS-AFELGTQLHAYALK 299

Query: 242 ----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
               + NIV  +T+   Y+K   M  A+ +F+  P  T      +I GYA +    EA  
Sbjct: 300 TNFGYDNIVGTATLDM-YAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALE 358

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           ++  ++++ L  D+ +L   L AC+       G+++H    K     N  V N ++DMYA
Sbjct: 359 IFRSLQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYA 418

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCG+L  A  +F+ M  KD VSWNA++     +   E+ L LF  M      PD YTF  
Sbjct: 419 KCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGS 478

Query: 418 VLCACTHAGFIDKGVQYF-----YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
           V+ AC     ++ G++         M  D+ +   +      ID+  + G L EA ++ +
Sbjct: 479 VVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAI------IDMYCKCGMLVEAEKIHE 532

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            +  E   + W +++         E A      ++++ G  P N+T
Sbjct: 533 RLE-ERTTVSWNSIISGFSSEKQGENALSYFSRMLQV-GVIPDNFT 576



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 140/329 (42%), Gaps = 46/329 (13%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K LN   ++  ++IK  +  D ++   +I     C  +  A K+   +++     +N++I
Sbjct: 487 KALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSII 546

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
                      A   F  M + GV  DNFTY  +L  C       L + IH  I K    
Sbjct: 547 SGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQILKLQLH 606

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+++ ++++D YSKCG   +  ++ +F    +RD V+W++MI      G   +A +LF+
Sbjct: 607 SDVYIASTIVDMYSKCG--NMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFE 664

Query: 208 EMPERDAVSWNTI----------------------------------------LDGYAKA 227
           EM  ++    +TI                                        +D   ++
Sbjct: 665 EMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRS 724

Query: 228 GEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFD---RMPAKTLVPWTIII 283
           G++N A EL E +P   + V W T++      G++E+A+   +   ++  +    + ++ 
Sbjct: 725 GQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLS 784

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           + YA  GM  E A++   M+   LK + G
Sbjct: 785 NVYAIAGMWGEVAKIRSFMKNYKLKKEPG 813


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/571 (34%), Positives = 314/571 (54%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L + +QL + +IK  +  D  +   L+     C  +  A ++F   Q  +V L+N ++ A
Sbjct: 330 LCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVA 389

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             +    +++FR+F  MQ KG+  + FTYP +L+ C       L + IH  + K G+  +
Sbjct: 390 FGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFN 449

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           ++V + LID Y+K G   +  A  +  ++ E D+VSW ++I+G  +    +EA + F EM
Sbjct: 450 VYVCSVLIDMYAKHG--KLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM 507

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW--------STMVWGYSKDGDM 261
             R   S N        A     A     +I  ++ VS         + +V  Y++ G +
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRI 567

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A L F+++ AK  + W  +ISG+A+ G  ++A +++ QM  A L+    T  S ++A 
Sbjct: 568 KEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAA 627

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    +  G ++HA I K  F  +  V NAL+  YAKCGS+++A   F  M +K+ VSWN
Sbjct: 628 ANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWN 687

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ G + HG G +A+ LF +MK  G  P+  TFVGVL AC+H G + KG+ YF SM ++
Sbjct: 688 AMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKE 747

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +G++P+  HY C++DL+ R+G L  A + ++ MP+EP+A IW TLL AC  H  VE+ E 
Sbjct: 748 HGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEF 807

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L+ L+  D   Y +LSN++A +G W+     R  M+    +K  G S +EV N VH
Sbjct: 808 AAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVH 867

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+LHP +++IY+ +  L K    +G+
Sbjct: 868 AFYVGDRLHPLADKIYEFLAELNKKAAEIGY 898



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 152/545 (27%), Positives = 254/545 (46%), Gaps = 22/545 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +   +Q+ A+II   L   P I+  LI   A    +  A KVF+++   D   +  +I  
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISG 187

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN    +A  +F +M   G+F   + +  +L  C     F + + +HAL++K G   +
Sbjct: 188 FSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLE 247

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            +V N+L+  YS+  +     A+K+F  M  +D VS+NS+I+GL + G    A  LF +M
Sbjct: 248 TYVCNALVTLYSR--MPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKM 305

Query: 210 P----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-----YSKDGD 260
                + D V+  ++L   A  G +    +L   +    I S   +V G     Y    D
Sbjct: 306 KRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISS-DMIVEGALLDLYVNCSD 364

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ A  +F     + +V W +++  + +     E+ R++ QM+  GL P+  T  SIL  
Sbjct: 365 IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRT 424

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C   G L LG ++H  + K  F+ N  VC+ L+DMYAK G LD A  +   +T+ D+VSW
Sbjct: 425 CTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSW 484

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            A++ G A H    +AL  F  M + G   D   F   + AC     +++G Q  ++   
Sbjct: 485 TALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQ-IHAQSY 543

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
             G    +     ++ L  R GR+KEA    + +  + ++I W  L+    +    E A 
Sbjct: 544 VSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAK-DSISWNGLISGFAQSGYCEDAL 602

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ--KPSGASSVEVDN 558
           +V   + R K  +   +T  S + AA      +AN++ Q K+  A   K    S +EV N
Sbjct: 603 KVFAQMNRAK-LEASFFTFGSAVSAAA----NIANIK-QGKQIHAMIIKRGFDSDIEVSN 656

Query: 559 EVHEF 563
            +  F
Sbjct: 657 ALITF 661



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 128/504 (25%), Positives = 229/504 (45%), Gaps = 16/504 (3%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK 70
           F    +    L    K K  +  +QL A + K     + Y+   L++  +       A K
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEK 269

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           VF+ +Q  D   +N+LI    Q   +  A  +F  M+   +  D  T   LL AC     
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
               + +H+ + K G   D+ V  +L+D Y  C    +  A ++F++    ++V WN M+
Sbjct: 330 LCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS--DIKTAHEMFLTAQTENVVLWNVML 387

Query: 191 AGLVKGGELSEARRLFDEMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHR--- 243
               K   LSE+ R+F +M  +  +    ++ +IL      G ++L  ++  ++      
Sbjct: 388 VAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQ 447

Query: 244 -NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
            N+   S ++  Y+K G ++ A ++   +    +V WT +ISGYA+  +  EA + + +M
Sbjct: 448 FNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM 507

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
              G++ D+    S ++ACA    L  G ++HA      +  + ++ NALV +YA+CG +
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRI 567

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
             A   F  +  KD +SWN ++ G A  G  E AL +F++M         +TF   + A 
Sbjct: 568 KEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAA 627

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
            +   I +G Q  ++M    G    +E    +I    + G +++A R    MP E N + 
Sbjct: 628 ANIANIKQGKQ-IHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMP-EKNDVS 685

Query: 483 WGTLLGACRKH----NAVELAEEV 502
           W  ++    +H     AV L E++
Sbjct: 686 WNAMITGYSQHGYGNEAVNLFEKM 709



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 232/475 (48%), Gaps = 13/475 (2%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K+L  +I+KL    +  +  KL+        +   +KVF D+ +  V  ++ +I 
Sbjct: 25  SLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIIS 84

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYF 147
             ++  ++ +   +F  M E+ V     ++  +L+AC+G        + IHA I   G  
Sbjct: 85  GFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGIRYAEQIHARIICHGLL 144

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               + N LI  Y+K G++ +S A+K+F ++  +D VSW +MI+G  + G   EA  LF 
Sbjct: 145 CSPIISNPLIGLYAKNGLI-IS-ARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFC 202

Query: 208 EMPERDAVS----WNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDG 259
           EM           ++++L G  K    ++  +L    F+          + +V  YS+  
Sbjct: 203 EMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMP 262

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           +   A+ +F +M +K  V +  +ISG A++G +  A  L+ +M+   LKPD  T+ S+L+
Sbjct: 263 NFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLS 322

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA +G L  G ++H+ + K     +  V  AL+D+Y  C  +  A  +F     +++V 
Sbjct: 323 ACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVL 382

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN ML          ++  +F +M+ +G  P+++T+  +L  CT  G +D G Q  ++  
Sbjct: 383 WNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQ-IHTQV 441

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
              G    V     +ID+  + G+L  A  +++++  E + + W  L+    +HN
Sbjct: 442 IKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL-TEDDVVSWTALISGYAQHN 495



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 130/466 (27%), Positives = 222/466 (47%), Gaps = 22/466 (4%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+ +G+  +  TY +LL  C         + +H  I K G+  +  + N L+D Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALG- 59

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA----VSWNTIL 221
             +    K+F  M  R + SW+ +I+G ++    +    LF  M E +     +S+ ++L
Sbjct: 60  -DLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVL 118

Query: 222 DGYAKAGEMNLAFELFEKIPHRNI--------VSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
              A +G   +     E+I  R I        +  + ++  Y+K+G +  A+ +FD +  
Sbjct: 119 R--ACSGH-RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCT 175

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           K  V W  +ISG+++ G  +EA  L+ +M  AG+ P      S+L+ C +  L  +G ++
Sbjct: 176 KDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQL 235

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           HA + KY     T VCNALV +Y++  +  +A  VF+ M  KD VS+N+++ GLA  G  
Sbjct: 236 HALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFS 295

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           + AL LF++MK +   PD  T   +L AC   G + KG Q  +S     GI   +   G 
Sbjct: 296 DGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQ-LHSYVIKAGISSDMIVEGA 354

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           ++DL      +K A  +  +   E N ++W  +L A  K + +  +  +    +++KG  
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVAFGKLDNLSESFRIFR-QMQIKGLI 412

Query: 514 PGNYTMLSNIFAAT--GDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           P  +T  S +   T  G  +    +  Q+ KT  Q      SV +D
Sbjct: 413 PNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLID 458



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 100/214 (46%), Gaps = 23/214 (10%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+ Q KQ+ A IIK     D  ++  LI+  A C  +  A + F ++ + +   +N +I 
Sbjct: 632 NIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMIT 691

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
              Q+    +A  +F  M++ G   ++ T+  +L AC+       G  +F  +   H L+
Sbjct: 692 GYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLV 751

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGL-----VK 195
            K  ++        ++D  S+ G   +S A+K    M  E D   W ++++       V+
Sbjct: 752 PKPAHYA------CVVDLISRAGF--LSRARKFIEEMPIEPDATIWRTLLSACTVHKNVE 803

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
            GE + A+ L +  PE D+ ++  + + YA +G+
Sbjct: 804 VGEFA-AQHLLELEPE-DSATYVLLSNMYAVSGK 835


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 188/535 (35%), Positives = 316/535 (59%), Gaps = 10/535 (1%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF+ + D +V  +  +I    Q   +  A  +FLDM   G   D FT   ++ AC  
Sbjct: 98  AYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAE 157

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSW 186
                L +  H L+ K G   D+ V  SL+D Y+KC   G V  A+K+F  M   +++SW
Sbjct: 158 MGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSW 217

Query: 187 NSMIAGLVK-GGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
            ++I G V+ GG   EA  LF EM +     +  +++++L   A   ++ L  +++  + 
Sbjct: 218 TAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVV 277

Query: 242 HRNIVSWS----TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
              + S +    +++  YS+ G+ME A+  FD +  K LV +  I++ YA+   ++EA  
Sbjct: 278 KMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFE 337

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L++++E AG   +  T  S+L+  +  G +G G ++H+ I K  FK N ++CNAL+ MY+
Sbjct: 338 LFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYS 397

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           +CG+++ A  VFN M   +++SW +M+ G A HG   +AL  F +M + G  P++ T++ 
Sbjct: 398 RCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIA 457

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           VL AC+H G I +G+++F SM+ ++GI+P++EHY C++DLLGRSG L+EA+ LV SMP +
Sbjct: 458 VLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK 517

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
            +A++  T LGACR H  ++L +   + ++     DP  Y +LSN+ A+ G W +VA +R
Sbjct: 518 ADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIR 577

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +MK+    K +G S +EV+N+VH+F V D  HP++++IY  ++ L   +K +G+
Sbjct: 578 KKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGY 632



 Score =  178 bits (451), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 130/464 (28%), Positives = 229/464 (49%), Gaps = 21/464 (4%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           D+  ++ LI     N    +A   F DM E G + + + +  + +AC+ K    L ++I 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 139 ALIYKCGYF-GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
             + K GYF  D+ V  +LID + K G   +  A K+F  M +R++V+W  MI    + G
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVK-GNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 198 ELSEARRLFDEM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVS 247
              +A  LF +M      P+R  +S   ++   A+ G ++L  +    +       ++  
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLS--GVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCV 182

Query: 248 WSTMVWGYSK---DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA-KEAARLYDQME 303
             ++V  Y+K   DG ++ A+ +FDRMP   ++ WT II+GY + G   +EA  L+ +M 
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
           +  +KP+  T  S+L ACA    + LG +V+A + K R      V N+L+ MY++CG+++
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNME 302

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
           NA   F+ + +K+LVS+N ++   A     E+A  LF+ ++  G G + +TF  +L   +
Sbjct: 303 NARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGAS 362

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
             G I KG Q  +S     G    +     +I +  R G ++ A ++   M  + N I W
Sbjct: 363 SIGAIGKGEQ-IHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISW 420

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            +++    KH     A E    ++   G  P   T ++ + A +
Sbjct: 421 TSMITGFAKHGFATRALETFHKMLE-AGVSPNEVTYIAVLSACS 463



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 200/422 (47%), Gaps = 29/422 (6%)

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA---------GEM 230
           +RD+VSW+++I+      +  EA   F +M E           G  +A         G++
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSK-DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
              F L       ++     ++  + K +GD+E A  +FDRMP + +V WT++I+ + + 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G +++A  L+  M  +G  PD  TL  +++ACAE GLL LG + H  + K     +  V 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 350 NALVDMYAKC---GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK-ALGLFSRMKD 405
            +LVDMYAKC   GS+D+A  VF+ M   +++SW A++ G    G  ++ A+ LF  M  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRL 464
               P+ +TF  VL AC +   I  G Q +  + +    L  +   G  +I +  R G +
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMR--LASINCVGNSLISMYSRCGNM 301

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNI 523
           + A R    +  E N + + T++ A  K    E A E+ +    ++G+  G N    +++
Sbjct: 302 ENA-RKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFN---EIEGAGTGVNAFTFASL 357

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE-VHEFSVCDQLHPKSEQIYQMINT 582
            +       +   + +   +R  K    S++ + N  +  +S C  +    E  +Q+ N 
Sbjct: 358 LSGASSIGAIG--KGEQIHSRILKSGFKSNLHICNALISMYSRCGNI----EAAFQVFNE 411

Query: 583 LG 584
           +G
Sbjct: 412 MG 413



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 151/315 (47%), Gaps = 20/315 (6%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C NL+     +Q++A ++K+ L     +   LIS  + C  M  A K F+ + + ++
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YNT++ A  ++  + +AF +F +++  G   + FT+  LL   +        + IH+ 
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR 376

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G+  ++ + N+LI  YS+CG   +  A ++F  MG+ +++SW SMI G  K G  +
Sbjct: 377 ILKSGFKSNLHICNALISMYSRCG--NIEAAFQVFNEMGDGNVISWTSMITGFAKHGFAT 434

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE--KIPH---RNIVSWSTM 251
            A   F +M E     + V++  +L   +  G ++   + F+  K+ H     +  ++ +
Sbjct: 435 RALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACV 494

Query: 252 VWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGM--AKEAARLYDQMEEAGL 307
           V    + G +E A  L + MP  A  LV  T + +      M   K AA +   +E+   
Sbjct: 495 VDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMI--LEQDPH 552

Query: 308 KPDDGTLISILAACA 322
            P    L+S L A A
Sbjct: 553 DPAAYILLSNLHASA 567


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 301/561 (53%), Gaps = 40/561 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F+ +  P   L  TLI A  +   + +    F  +  +G        P ++K+C  
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  + +H      G  GDIFV  +L+D Y+K G   +  A K+F  M  +D +  N
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNG--DMDCAVKVFDEMPVKDPIPMN 155

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHR 243
            +I G  K G++ +ARRLFD M  R + SWN+++  YA  GE   A  LF ++       
Sbjct: 156 CLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARP 215

Query: 244 NIVSWSTMVWGYSKDGDMEM----------------------------------AKLLFD 269
           N ++ +TM    +K GD+E                                   A+  FD
Sbjct: 216 NAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCQAIDEARREFD 275

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           RM  + +V W+ +I+GYA+ G   E+  L+++M+    KP++ TL+ +L+ACA+ G   L
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++ + +        + + +AL+DMY KCG +  A SVFN M  K +++WN+M+ GLA+
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G  + A+ L+  M +E   P++ TFV +L ACTHAG +D+G+ +F  M+  + + PQVE
Sbjct: 396 NGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVE 455

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           H  C++DLL +SGRL+EA + +  M VEPNA+IW TLL ACR H  VELA+     L+ L
Sbjct: 456 HCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVL 515

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  +   Y +LSNI+A  G W  V  +R  M+    QK S  S +E+D EVH+F V D  
Sbjct: 516 EPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTY 575

Query: 570 HPKSEQIYQMINTLGKDLKPV 590
           HPKS +I+ +++ +G  L  V
Sbjct: 576 HPKSAEIFNVVDGMGLHLDDV 596



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 182/406 (44%), Gaps = 44/406 (10%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND--IQDP----------- 78
           Q KQ+    I   L  D ++   L+   A    M  A+KVF++  ++DP           
Sbjct: 103 QGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYS 162

Query: 79  ---DV----HLYNTLIR--ACVQNSLNA---------QAFRVFLDMQEKGVFTDNFTYPF 120
              DV     L++ ++R  +   NS+ A         +A R+F  M  +G   +  T   
Sbjct: 163 KSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIAT 222

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           +   C         +   +LI +     ++ V  +L++ Y KC    +  A++ F  M +
Sbjct: 223 MFSICAKTGDLETGKWARSLIAEQD-LQNMIVHTALMEMYVKCQ--AIDEARREFDRMQQ 279

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFEL 236
           RD+V+W++MIAG  + G   E+  LF+ M     + + V+   +L   A+ G   L  ++
Sbjct: 280 RDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQI 339

Query: 237 FEKIPHRN--IVSW--STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
              +  +N  + S+  S ++  Y+K G +  A+ +F+RM  K ++ W  ++ G A  G A
Sbjct: 340 GSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFA 399

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNA 351
           ++A  LY +M E  ++P++ T +++L AC  +GL+  GM     +   +        C  
Sbjct: 400 QDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCAC 459

Query: 352 LVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
           +VD+  K G L  A      M  + + V W+ +L     H   E A
Sbjct: 460 IVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELA 505



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 144/317 (45%), Gaps = 22/317 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L   K   + I + DLQ +  +   L+     C+ +  A + F+ +Q  DV  ++T
Sbjct: 229 KTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWST 287

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN    ++  +F  M+      +  T   +L AC       L   I + +    
Sbjct: 288 MIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQN 347

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y+KCG VG   A+ +F  M  + +++WNSM+ GL   G   +A  L
Sbjct: 348 LPLTSYLGSALIDMYTKCGHVG--RARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITL 405

Query: 206 FDEMPERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYS 256
           + EM E D     +++  +L     AG ++     F+++   + VS      + +V    
Sbjct: 406 YKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLC 465

Query: 257 KDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           K G + E  K + D       V W+ ++S    +A+  +AK AA      +   L+PD+ 
Sbjct: 466 KSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAS-----KLLVLEPDNS 520

Query: 313 TLISILAAC-AESGLLG 328
           ++  +L+   A++GL G
Sbjct: 521 SIYVLLSNIYADAGLWG 537


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/555 (35%), Positives = 310/555 (55%), Gaps = 23/555 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI-SSLALCRQMGLAIKVFNDIQDPDVHL 82
           L+ C +L    ++ A ++     ++  ++ KLI ++  L   M  A K+F+ +   DV L
Sbjct: 36  LNCCSSLPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRDVFL 95

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NTLIR         +A  ++ +M   G+F DN+T+PF++++C   +     + +H  I 
Sbjct: 96  WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155

Query: 143 KCGYFGDIFVPNSLIDSYSKCG-VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           K G+  D+FV +SL+  YS+ G  +G+ L   +F  M  R+IVSW ++IAG V+     E
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQSGETLGMEL---VFGEMVVRNIVSWTAVIAGYVQNRYFKE 212

Query: 202 ARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---------RNIVSW 248
              +F EM     + +AV+  ++L   A    +NL      K+ H          ++   
Sbjct: 213 GLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLG-----KLIHGYGIKLGVDPDVSLT 267

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + ++  Y K G++E A+ LFD M  + LV W  +I+ Y +      A +L+ +M+   + 
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
            D  T++S+++ACA  G L  G  +H  + +   + N ++ NAL+DMYAKCG++D A  V
Sbjct: 328 FDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREV 387

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F  +  + +VSW +M+   A HG GE AL LFSRMKDEG  P+ +TF  V  AC H+G +
Sbjct: 388 FERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLV 447

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           ++G ++F SM RDY I+P VEH  CM+DLLGR+G L EA   +  MPVEP+  +WG LLG
Sbjct: 448 EEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLG 507

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           +CR H+ +ELAE V + L  L       Y ++SNI+A  G W   A +R  M++   +K 
Sbjct: 508 SCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKI 567

Query: 549 SGASSVEVDNEVHEF 563
            G S VEV+   H F
Sbjct: 568 PGHSLVEVNRRFHTF 582


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 301/561 (53%), Gaps = 40/561 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F+ +  P   L  TLI A  +   + +    F  +  +G        P ++K+C  
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  + +H      G  GDIFV  +L+D Y+K G   +  A K+F  M  +D +  N
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNG--DMDCAVKVFDEMPVKDPIPMN 155

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHR 243
            +I G  K G++ +ARRLFD M  R + SWN+++  YA  GE   A  LF ++       
Sbjct: 156 CLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARP 215

Query: 244 NIVSWSTMVWGYSKDGDMEM----------------------------------AKLLFD 269
           N ++ +TM    +K GD+E                                   A+  FD
Sbjct: 216 NAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDEARREFD 275

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           RM  + +V W+ +I+GYA+ G   E+  L+++M+    KP++ TL+ +L+ACA+ G   L
Sbjct: 276 RMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDEL 335

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++ + +        + + +AL+DMY KCG +  A SVFN M  K +++WN+M+ GLA+
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G  + A+ L+  M +E   P++ TFV +L ACTHAG +D+G+ +F  M+  + + PQVE
Sbjct: 396 NGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVE 455

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           H  C++DLL +SGRL+EA + +  M VEPNA+IW TLL ACR H  VELA+     L+ L
Sbjct: 456 HCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVL 515

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  +   Y +LSNI+A  G W  V  +R  M+    QK S  S +E+D EVH+F V D  
Sbjct: 516 EPDNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWIELDGEVHKFLVQDTY 575

Query: 570 HPKSEQIYQMINTLGKDLKPV 590
           HPKS +I+ +++ +G  L  V
Sbjct: 576 HPKSAEIFNVVDGMGLHLDDV 596



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 182/406 (44%), Gaps = 44/406 (10%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND--IQDP----------- 78
           Q KQ+    I   L  D ++   L+   A    M  A+KVF++  ++DP           
Sbjct: 103 QGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCLITGYS 162

Query: 79  ---DV----HLYNTLIR--ACVQNSLNA---------QAFRVFLDMQEKGVFTDNFTYPF 120
              DV     L++ ++R  +   NS+ A         +A R+F  M  +G   +  T   
Sbjct: 163 KSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIAT 222

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           +   C         +   +LI +     ++ V  +L++ Y KC    +  A++ F  M +
Sbjct: 223 MFSICAKTGDLETGKWARSLIAEQD-LQNMIVHTALMEMYVKCR--AIDEARREFDRMQQ 279

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFEL 236
           RD+V+W++MIAG  + G   E+  LF+ M     + + V+   +L   A+ G   L  ++
Sbjct: 280 RDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQI 339

Query: 237 FEKIPHRN--IVSW--STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
              +  +N  + S+  S ++  Y+K G +  A+ +F+RM  K ++ W  ++ G A  G A
Sbjct: 340 GSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFA 399

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNA 351
           ++A  LY +M E  ++P++ T +++L AC  +GL+  GM     +   +        C  
Sbjct: 400 QDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCAC 459

Query: 352 LVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
           +VD+  K G L  A      M  + + V W+ +L     H   E A
Sbjct: 460 IVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELA 505



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 144/317 (45%), Gaps = 22/317 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L   K   + I + DLQ +  +   L+     CR +  A + F+ +Q  DV  ++T
Sbjct: 229 KTGDLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWST 287

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN    ++  +F  M+      +  T   +L AC       L   I + +    
Sbjct: 288 MIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSACAQLGSDELGGQIGSHVESQN 347

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y+KCG VG   A+ +F  M  + +++WNSM+ GL   G   +A  L
Sbjct: 348 LPLTSYLGSALIDMYTKCGHVG--RARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITL 405

Query: 206 FDEMPERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYS 256
           + EM E D     +++  +L     AG ++     F+++   + VS      + +V    
Sbjct: 406 YKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVEHCACIVDLLC 465

Query: 257 KDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           K G + E  K + D       V W+ ++S    +A+  +AK AA      +   L+PD+ 
Sbjct: 466 KSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAAS-----KLLVLEPDNS 520

Query: 313 TLISILAAC-AESGLLG 328
           ++  +L+   A++GL G
Sbjct: 521 SIYVLLSNIYADAGLWG 537


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 315/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++   +I      + +    +++  A CRQ+  A  +F+ + + D+  +NT+I 
Sbjct: 45  DLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMIS 104

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN     A  + L M E+G   D+ T   +L A        +   +H  + + G+  
Sbjct: 105 GYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFES 164

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + V  +L+D YSKCG   VS+A+ +F  M  R +VSWNSMI G V+ G+   A  +F +
Sbjct: 165 LVNVSTALVDMYSKCG--SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQK 222

Query: 209 MPERDAVSWNTILDGYAKA----GEMN---LAFELFEKIPHRNIVS-WSTMVWGYSKDGD 260
           M +      N  + G   A    G++       +L +++   + VS  ++++  YSK   
Sbjct: 223 MLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKR 282

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +++A  +F  +  KTLV W  +I GYA+ G   EA   + +M+   +KPD  T++S++ A
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            AE  +      +H  + +     N  V  ALVDMYAKCG++  A  +F+ M  + +++W
Sbjct: 343 LAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITW 402

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NAM+ G   HG G+ ++ LF  MK     P+  TF+  L AC+H+G +++G+ +F SM++
Sbjct: 403 NAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKK 462

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           DYGI P ++HYG M+DLLGR+GRL +A   +Q MP++P   ++G +LGAC+ H  V+L E
Sbjct: 463 DYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGE 522

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
           +    + +L   D G + +L+NI+A    W KVA VR  M+K+  QK  G S VE+ NEV
Sbjct: 523 KAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEV 582

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F      HP+S++IY  + TL  +++  G+
Sbjct: 583 HSFYSGTTSHPQSKKIYSYLETLVDEIRAAGY 614



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 219/454 (48%), Gaps = 21/454 (4%)

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +++   ++S    A   F  M+   V    + + +LLK C   +     + IH  +   G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  ++F    +++ Y+KC    ++ A  +F  M ERD+V WN+MI+G  + G    A  L
Sbjct: 61  FSWNLFAMTGVVNMYAKCR--QINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALML 118

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWST-MVWGYSK 257
              M E     D+++  +IL   A    + +   +   +      ++V+ ST +V  YSK
Sbjct: 119 VLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSK 178

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G + +A+++FD M  +T+V W  +I GY + G A+ A  ++ +M + G++P + T++  
Sbjct: 179 CGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGA 238

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA+ G L  G  VH  +++ +   + +V N+L+ MY+KC  +D A  +F  +  K L
Sbjct: 239 LHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 298

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSWNAM+ G A +G   +AL  F  M+     PD +T V V+ A      I +  ++ + 
Sbjct: 299 VSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELS-IPRQAKWIHG 357

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH---- 493
           +     +   V     ++D+  + G +  A +L   M    + I W  ++     H    
Sbjct: 358 LVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHGLGK 416

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            +VEL +E+    I+     P + T L  + A +
Sbjct: 417 TSVELFKEMKKGTIK-----PNDITFLCALSACS 445


>gi|357118276|ref|XP_003560882.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Brachypodium distachyon]
          Length = 508

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/491 (37%), Positives = 285/491 (58%), Gaps = 33/491 (6%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           M  A KVF+ I  PD+ ++N ++R    ++  A AF ++  ++   +  D+FT+ +LL+A
Sbjct: 47  MDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFCYLLRA 106

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C G         +H  + K GYF D FV N+LI+ ++KCG                    
Sbjct: 107 CAGLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCG-------------------- 146

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
             + ++AG            L DE  ERD V+ + ++ G+A  GE+++A +LF++  H++
Sbjct: 147 --DLLVAGT-----------LLDEAGERDVVARSAVIAGHAAKGELDIARQLFDECQHKD 193

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           +V W+ MV  Y+K G+ME A+ L DR P K +V W  II+GY  KG+ KEA  + D+M  
Sbjct: 194 LVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIITGYTAKGLLKEALEVLDEMRC 253

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            GL PD+ T++S+L+ CA  G LG G  +H+   + R   +    NALV MYAKCG +  
Sbjct: 254 VGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCISILPGNALVSMYAKCGDVQA 313

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           AM VF+ M ++D+ +WN+++ GLA HGQ E+++  F++M DEG  P++ +F+ VL AC+H
Sbjct: 314 AMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNKMLDEGLCPNEISFLCVLGACSH 373

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AG ++ G +YF  M   Y I P   HY C++D+LGRSG L EA  +V SM  EP  +IW 
Sbjct: 374 AGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSGLLDEAFAIVSSMRCEPAVVIWR 433

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
           TLLGACR H  V L +   + L+++     G+Y +LS I+A+  +W  V  VR  M +  
Sbjct: 434 TLLGACRIHGDVALGKLARERLLKMNEDASGDYVLLSGIYASCDEWFGVETVRGSMDERG 493

Query: 545 AQKPSGASSVE 555
            +K +G + VE
Sbjct: 494 IRKVAGYAQVE 504



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 126/310 (40%), Gaps = 76/310 (24%)

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           S +G M+ A+ +FD +    L    +++ GYA       A  LY ++E A LKPD  T  
Sbjct: 42  SFNGGMDYARKVFDGISHPDLFMHNVMVRGYAHSAAPAAAFVLYRRIEAARLKPDSFTFC 101

Query: 316 SILAACAESGLLG--LGMKVHASINKYRFKCNTNVCNALVDMYAKC-------------- 359
            +L ACA  GL G   G +VH ++ K  +  +  V NAL++M+AKC              
Sbjct: 102 YLLRACA--GLPGSCAGYQVHGAVVKLGYFKDAFVRNALINMHAKCGDLLVAGTLLDEAG 159

Query: 360 -----------------GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                            G LD A  +F+    KDLV WN M+   A +G+ EKA GL  R
Sbjct: 160 ERDVVARSAVIAGHAAKGELDIARQLFDECQHKDLVCWNVMVAAYAKYGEMEKARGLLDR 219

Query: 403 -------------------------------MKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
                                          M+  G  PD+ T V +L  C + G +  G
Sbjct: 220 APEKDVVSWNTIITGYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTG 279

Query: 432 VQYFYSMERD----YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
            +  +S+  +      ILP       ++ +  + G ++ A+ +   M  E +   W +++
Sbjct: 280 -RMIHSLHLEGRPCISILPG----NALVSMYAKCGDVQAAMEVFSRMK-ERDVWTWNSII 333

Query: 488 GACRKHNAVE 497
           G    H   E
Sbjct: 334 GGLAFHGQAE 343



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 136/311 (43%), Gaps = 26/311 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            L+  +QLF +       +D      ++++ A   +M  A  + +   + DV  +NT+I 
Sbjct: 178 ELDIARQLFDEC----QHKDLVCWNVMVAAYAKYGEMEKARGLLDRAPEKDVVSWNTIIT 233

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
                 L  +A  V  +M+  G+  D  T   LL  C         +MIH+L  +     
Sbjct: 234 GYTAKGLLKEALEVLDEMRCVGLMPDEATIVSLLSCCANLGSLGTGRMIHSLHLEGRPCI 293

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            I   N+L+  Y+KCG   V  A ++F  M ERD+ +WNS+I GL   G+  ++ + F++
Sbjct: 294 SILPGNALVSMYAKCG--DVQAAMEVFSRMKERDVWTWNSIIGGLAFHGQAEQSVQFFNK 351

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDG 259
           M +     + +S+  +L   + AG +      F  + +R     N   +S +V    + G
Sbjct: 352 MLDEGLCPNEISFLCVLGACSHAGLVEDGQRYFSLMINRYRIEPNARHYSCIVDMLGRSG 411

Query: 260 DMEMAKLLFDRM---PA----KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            ++ A  +   M   PA    +TL+    I    A   +A+E  RL    E+A    D  
Sbjct: 412 LLDEAFAIVSSMRCEPAVVIWRTLLGACRIHGDVALGKLARE--RLLKMNEDA--SGDYV 467

Query: 313 TLISILAACAE 323
            L  I A+C E
Sbjct: 468 LLSGIYASCDE 478


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 186/526 (35%), Positives = 299/526 (56%), Gaps = 11/526 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF+ + + +V  + +++R  VQ  L  +A  +F  M EK V +       L++    
Sbjct: 97  ARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRV 156

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L  MI           D+    ++I     C    +S A+++F  M +R++V+W 
Sbjct: 157 DEARRLFDMIPV--------KDVVASTNMIGGL--CSEGRLSEAREIFDEMPQRNVVAWT 206

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
           SMI+G     ++  AR+LF+ MP+++ V+W  +L GY ++G +N A ELF+ +P + + +
Sbjct: 207 SMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAA 266

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + M+ G+  +G++  A+ +FD+M  K    W+ +I  Y  KG   EA  L+  M+  G+
Sbjct: 267 CNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGV 326

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +P+  ++ISIL+ C     L  G +VH+ + +  F  +  V + L+ MY KCG L     
Sbjct: 327 RPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKR 386

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF+  + KD+V WN+++ G A HG GEKAL +F  M   G  PD+ TF+GVL AC + G 
Sbjct: 387 VFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGK 446

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           + +G++ F SM+  Y +  + EHY CM+DLLGR+G+L EA+ L+++MPVE +AI+WG LL
Sbjct: 447 VKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALL 506

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
            ACR H  ++LAE     L++L+ S  G Y +LSN++A+   W  VA +R  M+     K
Sbjct: 507 SACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSK 566

Query: 548 PSGASSVEVDNEVHEFSVCDQL-HPKSEQIYQMINTLGKDLKPVGH 592
             G S +EVDN+VH F+      HP+ E I + +  LG  L+  G+
Sbjct: 567 SPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGY 612



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 191/387 (49%), Gaps = 53/387 (13%)

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           Y+  +     +    I  +++ G   +  A+ +F  +  + + SWN+++AG       +E
Sbjct: 8   YRSYFSSSAAITQCQISYFARLG--QIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAE 65

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A++LFD+MPER+ +SWN ++ GY K G ++ A ++F+K+P RN+VSW++MV GY ++G +
Sbjct: 66  AQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLI 125

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+LLF RMP K +V WT+++ G  E G   EA RL+D             +I +    
Sbjct: 126 DEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFD-------------MIPVKDVV 172

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A + ++G                   +C+         G L  A  +F+ M ++++V+W 
Sbjct: 173 ASTNMIG------------------GLCSE--------GRLSEAREIFDEMPQRNVVAWT 206

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+ G AM+ + + A  LF  M D+    ++ T+  +L   T +G I++  + F +M   
Sbjct: 207 SMISGYAMNNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRINEAAELFKAMP-- 260

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
              +  V     MI   G +G + +A  +   M  E +   W  L+    +    EL   
Sbjct: 261 ---VKPVAACNGMIMGFGLNGEVGKARWVFDQMK-EKDDGTWSALI-KIYERKGFELEAL 315

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATG 528
            L  L++ +G  P N+  + +I +  G
Sbjct: 316 ALFSLMQREGVRP-NFPSIISILSVCG 341



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 88/211 (41%), Gaps = 43/211 (20%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  +Q+ +Q+++     D Y++  LI+    C  +    +VF+     D+ ++N++I 
Sbjct: 345 SLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIA 404

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+    +A  VF +M   G   D  T+  +L A                   CGY G
Sbjct: 405 GYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSA-------------------CGYTG 445

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS-----WNSMIAGLVKGGELSEAR 203
            +           K G+       ++F SM  +  V      +  M+  L + G+L+EA 
Sbjct: 446 KV-----------KEGL-------EIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAM 487

Query: 204 RLFDEMP-ERDAVSWNTILDGYAKAGEMNLA 233
            L + MP E DA+ W  +L        ++LA
Sbjct: 488 NLIENMPVEADAIVWGALLSACRTHKNLDLA 518



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/396 (19%), Positives = 145/396 (36%), Gaps = 105/396 (26%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++ +++F ++     QR+      +IS  A+  ++ +A K+F  + D +   +  +++ 
Sbjct: 187 LSEAREIFDEMP----QRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKG 242

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFT---------------------------DNFTYPFLL 122
             ++    +A  +F  M  K V                             D+ T+  L+
Sbjct: 243 YTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALI 302

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPN--SLIDSYSKCGVV-----GVSLAKKLF 175
           K    K +      + +L+ + G       PN  S+I   S CG +     G  +  +L 
Sbjct: 303 KIYERKGFELEALALFSLMQREG-----VRPNFPSIISILSVCGSLASLDHGRQVHSQLV 357

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFE 235
            S  + DI   + +I   +K G+L   +R+FD    +D V WN+I+ GYA+ G    A E
Sbjct: 358 RSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALE 417

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           +F +                           +F    A   + +  ++S     G  KE 
Sbjct: 418 VFHE---------------------------MFSSGAAPDEITFIGVLSACGYTGKVKEG 450

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             +++ M+                                  +KY+    T     +VD+
Sbjct: 451 LEIFESMK----------------------------------SKYQVDQKTEHYACMVDL 476

Query: 356 YAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
             + G L+ AM++   M  + D + W A+L     H
Sbjct: 477 LGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTH 512


>gi|242059435|ref|XP_002458863.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
 gi|241930838|gb|EES03983.1| hypothetical protein SORBIDRAFT_03g041710 [Sorghum bicolor]
          Length = 544

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 198/538 (36%), Positives = 298/538 (55%), Gaps = 47/538 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI +     DPD   +  L+R     SL  +A  V+     +         P LLKA   
Sbjct: 10  AIYMTTSSHDPDK--WAHLVREYASQSLLREAALVYARNVPRRTHHQPL-LPILLKAAAT 66

Query: 128 KNWFH--LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
            +     L + +HA   K  +  D+ V  +++  Y KCG   ++ A++ F  M +R+++S
Sbjct: 67  ASPAEPGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCG--ALADARRAFDEMPDRNVIS 124

Query: 186 -------------------------------WNSMIAGLVKGGELSEARRLFDEMPE--R 212
                                          W ++I G  K G+++EARR F+  P   R
Sbjct: 125 YNALLAGYAAAGDMDGALALFGGMRSWTYVTWATLIRGFAKKGDMAEARRWFETTPPGMR 184

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             V+W  ++ GY  AG+M  A E+F+++P RN   WS+MV GY K G+ E A+ +F R+P
Sbjct: 185 TVVTWTVLVHGYVSAGDMEAAREVFDRMPARNAFVWSSMVTGYFKAGNAEEAQAVFHRIP 244

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + LV W  +I+GYA+ G +++A   +D M +  +KPD+ T+ S+L+ACA+ G L  G K
Sbjct: 245 TRNLVNWNALIAGYAQIGCSEKALEAFDSMLQERVKPDEFTMASLLSACAQLGSLEQGKK 304

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           VH  IN+   + N  V N L+DMYAKCG L  A  +F+GM  K+   WN M+  LA HG+
Sbjct: 305 VHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMISALASHGR 364

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            ++AL LF +M+  G  P+  T + VL ACTH GF+D+G++ F  ++  YG+   VEHYG
Sbjct: 365 SDEALHLFFQMEHSGQTPNTITVLAVLGACTHGGFVDEGLRIFNKLD-AYGVEAGVEHYG 423

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-- 510
           C++DLLGR+G+LKEA  +V++MP EPN +IWG+LLGACR H   E++  V D + RL   
Sbjct: 424 CLVDLLGRAGKLKEAYEIVKNMPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEIHRLHSV 483

Query: 511 --GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
              S+   Y MLSNI AA+  W +   +R +M +   +K    SS+E+   + E+ VC
Sbjct: 484 HASSNDAEYIMLSNIMAASKRWEQAEQIRRKMARHGVEKTPACSSLELG--IPEYQVC 539



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 35/216 (16%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L Q K++   I +  ++++ ++   LI   A C  +  A  +F+ ++  +   +NT+I 
Sbjct: 298 SLEQGKKVHDFINREHIRKNHFVLNGLIDMYAKCGDLVYARYIFDGMRWKNTECWNTMIS 357

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A   +  + +A  +F  M+  G   +  T   +L AC                   G F 
Sbjct: 358 ALASHGRSDEALHLFFQMEHSGQTPNTITVLAVLGACTH-----------------GGFV 400

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D                 G+ +  KL     E  +  +  ++  L + G+L EA  +   
Sbjct: 401 D----------------EGLRIFNKLDAYGVEAGVEHYGCLVDLLGRAGKLKEAYEIVKN 444

Query: 209 MPER-DAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           MPE  + V W ++L      G+  ++  + ++I HR
Sbjct: 445 MPEEPNEVIWGSLLGACRVHGDAEMSRLVTDEI-HR 479


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 202/604 (33%), Positives = 325/604 (53%), Gaps = 47/604 (7%)

Query: 1   MSAPIRAPTWFSKRRLLE--EKLQN--LHKCKNLNQTKQLFAQIIKLDLQR-DPYIAPKL 55
           M A      +F+  R L   E L N  L +  ++N  K+L  +++     R +P +  KL
Sbjct: 1   MKAIASLSRYFATARQLSFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKL 60

Query: 56  ISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115
           +   A C + GLA  +F++I D +V  +N +IR+ V N L   A  V+  M  +G   D 
Sbjct: 61  MRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDM 120

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
           +TYP +LKA +  +   +   IH  + K G   +++V N LI  Y KC            
Sbjct: 121 YTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCK----------- 169

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFE 235
                                  L EA+++ DE+P RD VSWN+++  YA+ G  N A E
Sbjct: 170 ----------------------SLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALE 207

Query: 236 LFEKIPHRNI-------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
           L  ++   N+        S    V   + D ++   K +F ++  K+++ W ++I+ Y  
Sbjct: 208 LCREMEALNLKPNDCTMASLLPAVTNTTSD-NVLYVKEMFLKLTKKSVISWNVMIAMYVN 266

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
             M KEA  LY QME  G++PD  +++S+L A  +   L LG +VH    + +   N  +
Sbjct: 267 NSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLL 326

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            NAL+DMYAKCG L +A +VFN M  +D+VSW +++      GQG  A+ +F+ M++ G 
Sbjct: 327 ENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGL 386

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PD   FV VL AC+HAG +D G +Y++++  + GI P++EH+ C++DLLGR+G++ EA 
Sbjct: 387 NPDSIAFVSVLAACSHAGLLDDG-RYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAY 445

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             ++ MP+EP+  +WG LL ACR ++ + +     D L+ L     G Y +LSNI+A  G
Sbjct: 446 GFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAG 505

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W  VA +R  M++   +K  G S+VE+++ VH F   D  HP+S++IY+ ++ L   +K
Sbjct: 506 RWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMK 565

Query: 589 PVGH 592
            +G+
Sbjct: 566 ELGY 569


>gi|357517181|ref|XP_003628879.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522901|gb|AET03355.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 633

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 213/624 (34%), Positives = 332/624 (53%), Gaps = 56/624 (8%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI--- 69
           R L  E++++L   CK + Q  Q++A II      + +++  L +  A            
Sbjct: 10  RFLSNERIKSLLSSCKTMQQAHQIYAHIIVTGRHNNLHLSTTLFTFYASSSSSQSLHHSH 69

Query: 70  KVFNDIQDPDVHLYNTLIRACVQ-NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
            +F  I +PD+ L+N +I+A  Q +S     F +F  M    V  D+FT+PFLLKAC   
Sbjct: 70  TLFTQITNPDIFLWNAIIKAYSQIHSPPQHPFSLFKTMLNSSVLPDSFTFPFLLKACANV 129

Query: 129 --NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +       +H  + + G+  D+FV N+L++ Y  CG   V  A K+F     RD VS+
Sbjct: 130 LISAPQFGFQVHCHVLRNGFGSDVFVNNALLNFY--CGFGDVVNAYKVFDESFVRDCVSF 187

Query: 187 NSMIAGLVKGGELSEARRLFDEM------PER---------------------------- 212
           N+MI G  + G++S   R+F EM      P+                             
Sbjct: 188 NTMINGFARKGDVSGCFRVFGEMRGVCVRPDEYTFVALLSGCSVLEDYRIGRQVHGLVYR 247

Query: 213 -------DAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNIV-SWSTMVWGYSKDGDMEM 263
                  + +  N ++D YAK G + +A  +   + P +++V +W+++V  Y+  G++++
Sbjct: 248 ELGCFGGNVLLVNKLVDMYAKCGRLVMAETVLSVVKPGKSVVAAWTSLVSAYALRGEVKV 307

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LFD+M  + +V WT +ISGY+  G  +EA  L+ ++E  G+KPD+  +++ L+ACA 
Sbjct: 308 ARRLFDQMGERDVVSWTAMISGYSHAGCFQEALELFVKLEGLGMKPDEVAVVAALSACAR 367

Query: 324 SGLLGLGMKVHASINKYRFKCNTN--VCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVS 379
            G L LG ++H       + C+ N    +A+VDMYAKCGS+D A+ VF   +  KK    
Sbjct: 368 LGALELGRRIHRQYAGENWTCSINRGFTSAVVDMYAKCGSIDIALDVFRKTSDDKKTTFL 427

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           +N+++ GLA HG+GE A  LF  M   G  PD  TFV VL AC H G +D G + F SM 
Sbjct: 428 YNSIISGLAHHGRGEYAKNLFEEMGLLGLKPDNITFVAVLSACGHCGLVDFGKKLFESMF 487

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             YG+ P++EHYGCM+DLLGR+G L EA RL+  MP + NA+IW  LL AC+ H  V LA
Sbjct: 488 TVYGVSPEMEHYGCMVDLLGRAGHLDEAHRLILKMPFKANAVIWRALLSACKVHGDVALA 547

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
                 L+ L+      Y MLSN+ + T   ++ A++R  +     QKP G S VE++  
Sbjct: 548 RVASYELVELQHDHGAGYVMLSNMLSDTDQHDEAASLRKAIDNVGIQKPPGWSYVEMNRS 607

Query: 560 VHEFSVCDQLHPKSEQIYQMINTL 583
           +H+F   D+ HP+++    M+  +
Sbjct: 608 LHKFLAGDKSHPEAKTTELMLRDI 631


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 212/567 (37%), Positives = 305/567 (53%), Gaps = 50/567 (8%)

Query: 65  MGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           + LAI +FN    +P++ +YNTLI A   +    ++F ++  +   G   D  T  +LL+
Sbjct: 16  LDLAITLFNHFTPNPNLFIYNTLISA-FSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQ 74

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           A N   +   V+ IH      G F   ++ N+LI  Y + G+V   LA ++F  M   DI
Sbjct: 75  AVN---FISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLV--RLAHQVFEKMPSPDI 129

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEM------PERDAV--------------------SW 217
           VS+N MI G  K G   EA RLF EM      P+   +                     W
Sbjct: 130 VSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGW 189

Query: 218 ---------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
                          N +LD Y K  ++ LA   F  +  ++IVSW+ +V G +K G++E
Sbjct: 190 MERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELE 249

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+L F +MP + +V W  +++GYA +G       L   M    + PD  T+IS+++A  
Sbjct: 250 QARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAAT 309

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           ESG L  G   H  + + + K +  + +AL+DMY KCGS++ A  VF  + KKD+  W  
Sbjct: 310 ESGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTT 369

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ GLA HG G KAL LFS M+ E   PD  TFV VL AC+H+G +D+G++ F SM  DY
Sbjct: 370 MITGLAFHGYGSKALELFSEMQ-EDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSM-TDY 427

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P VEHYGC++DLL RSGRL EA  ++  MP++P+  IWG +L AC+    VELAE  
Sbjct: 428 GIEPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIA 487

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ L   + G YT+LSNI+AA+G W+    +R  M+    +K +G SSV VD  VH 
Sbjct: 488 SRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSVVVDGVVHN 547

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKP 589
           F   D+ HP    I  ++N L  ++KP
Sbjct: 548 FISADKCHPGWVDISSILNCLKNEMKP 574



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 188/415 (45%), Gaps = 45/415 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L     ++Q KQ+  Q I   L    Y+   LI        + LA +VF  +  PD+  +
Sbjct: 73  LQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSF 132

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI-- 141
           N +I    +     +A R+F +M   G+  D FT   LL +C         + +H  +  
Sbjct: 133 NVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMER 192

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K     ++ + N+L+D Y KC    V LA + F ++ E+DIVSWN ++AG  K GEL +
Sbjct: 193 RKPTISSNLILGNALLDMYVKCQ--KVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQ 250

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV--------------- 246
           AR  F +MP RD VSWN+++ GYA  G+     EL   +    ++               
Sbjct: 251 ARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATE 310

Query: 247 -----------SW-------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
                       W             S ++  Y K G +E A  +F  +  K +  WT +
Sbjct: 311 SGALDQGRWAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTM 370

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           I+G A  G   +A  L+ +M+E  + PDD T +S+L+AC+ SGL+  G+KV +S+  Y  
Sbjct: 371 ITGLAFHGYGSKALELFSEMQE-DVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGI 429

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAMLYGLAMHGQGEKA 396
           +        LVD+ A+ G L  A  + + M  K   S W AML      G  E A
Sbjct: 430 EPGVEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELA 484



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 11/315 (3%)

Query: 256 SKDGDMEMAKLLFDRM-PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           S   ++++A  LF+   P   L  +  +IS ++      E+  LY+ +  +G  PD  TL
Sbjct: 11  SHPDNLDLAITLFNHFTPNPNLFIYNTLISAFSSLKKI-ESFYLYNVLLSSGECPDKQTL 69

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           + +L A      +    ++H             + N L+ +Y + G +  A  VF  M  
Sbjct: 70  LYLLQAV---NFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPS 126

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
            D+VS+N M+ G A  G G +A+ LF  M   G  PD++T +G+L +C   G +  G   
Sbjct: 127 PDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAV 186

Query: 435 FYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
              MER    +      G  ++D+  +  +++ ALR   ++  E + + W  ++  C K 
Sbjct: 187 HGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALK-EKDIVSWNMIVAGCAKV 245

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +E A        ++   D  ++  L   +A  GD+  V  + + M   +   P   + 
Sbjct: 246 GELEQARLF---FYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKV-IPDTVTM 301

Query: 554 VEVDNEVHEFSVCDQ 568
           + + +   E    DQ
Sbjct: 302 ISLVSAATESGALDQ 316


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/416 (43%), Positives = 260/416 (62%), Gaps = 7/416 (1%)

Query: 116 FTYPFLLKACNGKN--WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
            TYPF++KACN  +  WF L+   H    K G+  D ++ +SLI  Y+    +G   AK+
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHV---KSGFECDSYIVSSLIHLYANGKDLGA--AKQ 55

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
           LF    +RD+VSWN+MI G VK GE+  AR +FD M  RD +SWNT+++GYA  G+++ A
Sbjct: 56  LFNLCSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEA 115

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
             LF+++P RN+VS ++M+ G+ K G++E A  LF  MP + +V W  +++ YA+ G   
Sbjct: 116 KRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 175

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA  L+DQM   G+KP + T++S+L+ACA  G L  G+ +H  IN  R + N+ V  ALV
Sbjct: 176 EALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 235

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DMYAKCG +  A  VFN M  KD+++WN ++ G+A+ G  ++A  LF  MK+ G  P+  
Sbjct: 236 DMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDI 295

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           TFV +L AC+HAG +D+G +    M   YGI P+VEHYGC+IDLL R+G L+EA+ L+ +
Sbjct: 296 TFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGT 355

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           MP+EPN    G LLG CR H   EL E V   LI L+    G         A TG+
Sbjct: 356 MPMEPNPCALGALLGGCRIHGNFELGEMVGKRLINLQPCQSGRLKSAIGXSADTGN 411



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 82/395 (20%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           +K   + D YI   LI   A  + +G A ++FN   D D+  +N +I   V+      A 
Sbjct: 26  VKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSDRDLVSWNAMIDGYVKRGEMGHAR 85

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
            VF  M  + V +                W                       N++I+ Y
Sbjct: 86  MVFDRMVCRDVIS----------------W-----------------------NTMINGY 106

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
           +  G   +  AK+LF  M ER++VS NSM+ G VK G + +A  LF EMP RD VSWN++
Sbjct: 107 AIVG--KIDEAKRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSM 164

Query: 221 LDGYAKAGEMNLAFELFEKI------PHR------------------------------- 243
           L  YA+ G+ N A  LF+++      P                                 
Sbjct: 165 LACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRI 224

Query: 244 --NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N +  + +V  Y+K G + +A  +F+ M +K ++ W  II+G A  G  KEA +L+ +
Sbjct: 225 EVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKE 284

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCG 360
           M+EAG++P+D T +++L+AC+ +G++  G K+   + + Y  +        ++D+ A+ G
Sbjct: 285 MKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAG 344

Query: 361 SLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
            L+ AM +   M  + +  +  A+L G  +HG  E
Sbjct: 345 LLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFE 379


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 203/645 (31%), Positives = 336/645 (52%), Gaps = 75/645 (11%)

Query: 27  CKNLNQT--KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           C++ NQT  K+L   I+K   Q + +++  LI++      +  A  VF+ I  P++  +N
Sbjct: 16  CESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWN 75

Query: 85  TLIRACVQNSLNAQAFRVF--------------------------------LDMQEKGVF 112
           T++    +  L +Q  ++F                                L +++  + 
Sbjct: 76  TILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMN 135

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            +  T+  +L  C+      L + I+  I K G+  D+FV + L+D Y+K G++    AK
Sbjct: 136 LNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLI--YDAK 193

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           + F  M ER++V  N+MI GL++ G + E++RLF  + ERD++SW  ++ G  + G    
Sbjct: 194 RYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLERE 253

Query: 233 AFELFE--------------------------------------KIPHR-NIVSWSTMVW 253
           A ++F                                       +  H+ N+   S +V 
Sbjct: 254 ALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVD 313

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK   ++ A+ +F RMP K ++ WT ++ GY + G ++EA +++ +M+  G++PDD T
Sbjct: 314 MYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFT 373

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S++++CA    L  G + H             V NAL+ +Y KCGS +N+  +F  M 
Sbjct: 374 LGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMN 433

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            +D VSW A+L G A  G+  + +GLF RM   G  PD  TF+GVL AC+ AG ++KG+Q
Sbjct: 434 IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQ 493

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF SM +++GI+P V+H  C+IDLLGR+GRL+EA   + +MP  P+ + W TLL +CR H
Sbjct: 494 YFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVH 553

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +E+ +   D LI L+  +P +Y +LS+++A+ G W+KVA +R  M+  R +K  G S 
Sbjct: 554 GDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSW 613

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           ++   +VH FS  DQ  P   QIY  +  L   +   G+   +S+
Sbjct: 614 IKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSS 658



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 96/237 (40%), Gaps = 37/237 (15%)

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+L  C ES       K+H  I K   +  T + N L+  Y K G+L  A  VF+ + + 
Sbjct: 10  SLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQP 69

Query: 376 DLVSWNAML-------------------------------YGLAMHGQGEKALGLFSRM- 403
           +L SWN +L                                G A +G    A+ ++  M 
Sbjct: 70  NLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLML 129

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           KD     ++ TF  +L  C+    +D G Q    + + +G    V     ++D+  + G 
Sbjct: 130 KDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILK-FGFGSDVFVGSPLVDMYTKLGL 188

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           + +A R    MP E N ++  T++    +   +E ++ +      LK  D  ++T++
Sbjct: 189 IYDAKRYFDEMP-ERNVVMCNTMITGLMRCGMIEESQRL---FCGLKERDSISWTIM 241


>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
          Length = 523

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 182/499 (36%), Positives = 285/499 (57%), Gaps = 39/499 (7%)

Query: 57  SSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM----QEKGVF 112
           S++A+   +  A  VF+ I  PD  +YNTLIR     +    A  ++  M       GV 
Sbjct: 20  SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVR 79

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            D  T+PF+L+AC           +HA + K G   D FV N+LI  ++ CG +G++ A 
Sbjct: 80  PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAA- 138

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
                                           LFD     DAV+W+ ++ G A+ G++  
Sbjct: 139 --------------------------------LFDGRAREDAVAWSAMITGCARRGDIGA 166

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LF++ P +++VSW+ M+  Y+K GDM +A+ LFD++P + +V W ++ISGY   G  
Sbjct: 167 ARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSH 226

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC--N 350
             A  L++QM+  G KPD  T++S+L+ACA+SG L +G ++H+S++    +    V   N
Sbjct: 227 LHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGN 286

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           AL+DMYAKCGS+ +A  VF  M  KD+ +WN+++ GLA+HG   +++ +F +M      P
Sbjct: 287 ALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D+ TFV VL AC+H G +DKG ++F  M+  Y + P ++HYGCM+D+LGR+G LKEA   
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEF 406

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           + +M  EPN++IW TLL ACR H  +ELA+     L++ +  + G+Y +LSNI+A+ G+W
Sbjct: 407 IDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEW 466

Query: 531 NKVANVRLQMKKTRAQKPS 549
                +R  M  +   K +
Sbjct: 467 FGSEKMRKLMDDSGVNKEA 485



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 170/374 (45%), Gaps = 53/374 (14%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+ A ++K   + D ++   LI   A C  +G+A  +F+     D   ++ +I  C +  
Sbjct: 103 QVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRG 162

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
                        + G   D      L   C  K                    D+   N
Sbjct: 163 -------------DIGAARD------LFDECPVK--------------------DLVSWN 183

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----P 210
            +I +Y+K G   ++LA++LF  + ERD+VSWN MI+G V+ G    A  LF++M     
Sbjct: 184 VMITAYAKRG--DMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE 241

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIP---HRN---IVSWSTMVWGYSKDGDMEMA 264
           + D V+  ++L   A +G++++   L   +     RN   +V  + ++  Y+K G M+ A
Sbjct: 242 KPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSA 301

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F  M  K +  W  I+ G A  G   E+  ++++M +  ++PD+ T +++L AC+  
Sbjct: 302 HEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHG 361

Query: 325 GLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
           G++  G +    + +KYR + N      +VDM  + G L  A    + M  + + V W  
Sbjct: 362 GMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRT 421

Query: 383 MLYGLAMHGQGEKA 396
           +L    +HG+ E A
Sbjct: 422 LLSACRVHGEIELA 435



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 21/260 (8%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I++ A    M LA ++F+ + + DV  +N +I   V+   +  A  +F  MQ  G   D
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHA----LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
             T   LL AC       + Q +H+    +  + G+   + + N+LID Y+KCG   +  
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGF--PVVLGNALIDMYAKCG--SMKS 300

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAK 226
           A ++F SM ++D+ +WNS++ GL   G + E+  +F++M       D +++  +L   + 
Sbjct: 301 AHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSH 360

Query: 227 AGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWT 280
            G ++   E F  + H+     NI  +  MV    + G ++ A    D M  +   V W 
Sbjct: 361 GGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCEPNSVIWR 420

Query: 281 IIISG---YAEKGMAKEAAR 297
            ++S    + E  +AK A R
Sbjct: 421 TLLSACRVHGEIELAKHANR 440


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 205/605 (33%), Positives = 317/605 (52%), Gaps = 66/605 (10%)

Query: 43  LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           L  + +P     +++  A  RQ   A ++F+ +   D+  +N+++    +N       + 
Sbjct: 134 LPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQF 193

Query: 103 FLDMQEKGVFTDNF-------------TYPFLLKACNGKNWFHLVQMIHALIYKCGY--F 147
           F +M E+ V + N              ++ F  K  N  N    V M+      CG+  F
Sbjct: 194 FEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPN-PNTVSWVTML------CGFARF 246

Query: 148 GDIFVPNSLIDSYSKCGVVG-------------VSLAKKLFMSMGERDIVSWNSMIAGLV 194
           G I     L D      VV              V  A  LFM M E++ +SW ++I G V
Sbjct: 247 GKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSISWTTVINGYV 306

Query: 195 KGGELSEARRLFDEMPER-------------------------------DAVSWNTILDG 223
           + G+L EAR+L ++MP R                               D V WNT++ G
Sbjct: 307 RMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVVCWNTMIAG 366

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           Y++ G M+ A  LF+++  ++IVSW+TMV  Y++ G M+ A  +F+ M  K +V W  +I
Sbjct: 367 YSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLI 426

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SG  + G   +A + +  M   G KPD  T    L++CA    L +G ++H  + K  + 
Sbjct: 427 SGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQLVMKSGYA 486

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  V NAL+ MYAKCGS+ +A  +F  +   D+VSWN+++   A++G G +AL LF +M
Sbjct: 487 TDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKM 546

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           + EG  PD+ TFVG+L AC+H G ID+G++ F  M + Y I P  EHY CM+DLLGR+GR
Sbjct: 547 EVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGR 606

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L+EA +LV+ M +  NA IWG LLGACR H  +ELA+   + L+  +     NY +LSN+
Sbjct: 607 LEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKLLEFEPHKTSNYVLLSNM 666

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            A  G W++VA VR  MK+  A+K  G S +E+ N VH F   D  HP++ ++  ++ +L
Sbjct: 667 QAEAGRWDEVARVRRLMKEKGAEKQPGWSWIELQNRVHAFLSEDPAHPRAVELCHILRSL 726

Query: 584 GKDLK 588
              ++
Sbjct: 727 TAHMR 731



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 142/591 (24%), Positives = 261/591 (44%), Gaps = 118/591 (19%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           K+  L K   +++  ++F  +      ++      +IS+ A   ++  A ++F+ +   +
Sbjct: 21  KITQLGKSGQIDEAIKVFQHMT----HKNTVTHNSMISAFAKNGRISDARQLFDGMPQRN 76

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-----KNWFHLV 134
           +  +N++I A + N    +A ++F  M  + +++  +T        NG     +N F+L+
Sbjct: 77  IVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYS--WTLMITCYTRNGELAKARNLFNLL 134

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
                      Y  +    N+++  Y+K        A++LF +M  +D+VSWNSM+ G  
Sbjct: 135 P----------YKWNPVCCNAMVAGYAKNR--QFDEARRLFDAMPAKDLVSWNSMLTGYT 182

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           + GE+    + F+EM ERD VSWN ++DG+ + G++N ++E FEKIP+ N VSW TM+ G
Sbjct: 183 RNGEMRLGLQFFEEMAERDVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCG 242

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           +++ G +  A+ LFD+MP + +V W  +I+ Y +     EA  L+ +M E     +  + 
Sbjct: 243 FARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISW 298

Query: 315 ISILAACAESGLLGLGMKV------------HASINKY--------------RFKCNTNV 348
            +++      G L    ++             A I+ Y              +      V
Sbjct: 299 TTVINGYVRMGKLDEARQLLNQMPYRNVAAQTAMISGYVQNKRMDDARQIFNQISIRDVV 358

Query: 349 C-NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD-- 405
           C N ++  Y++CG +D A+ +F  M KKD+VSWN M+   A  GQ + A+ +F  MK+  
Sbjct: 359 CWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKN 418

Query: 406 -----------------------------EGFGPDKYTFVGVLCACTHAGFIDKGVQ-YF 435
                                        EG  PD+ TF   L +C H   +  G Q + 
Sbjct: 419 IVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAALQVGKQLHQ 478

Query: 436 YSMERDYG------------------------ILPQVEHY-----GCMIDLLGRSGRLKE 466
             M+  Y                         +   ++H+       +I     +G  +E
Sbjct: 479 LVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGRE 538

Query: 467 ALRLVQSMPVE---PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           AL+L   M VE   P+ + +  +L AC     ++   ++  C+++    +P
Sbjct: 539 ALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 589



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 164/327 (50%), Gaps = 20/327 (6%)

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +F  N  I    K G +  ++  K+F  M  ++ V+ NSMI+   K G +S+AR+LFD M
Sbjct: 15  VFRHNLKITQLGKSGQIDEAI--KVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGM 72

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           P+R+ VSWN+++  Y     +  A +LF+K+P R++ SW+ M+  Y+++G++  A+ LF+
Sbjct: 73  PQRNIVSWNSMIAAYLHNDRVEEARQLFDKMPTRDLYSWTLMITCYTRNGELAKARNLFN 132

Query: 270 RMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
            +P K   V    +++GYA+     EA RL+D M    L   +    S+L     +G + 
Sbjct: 133 LLPYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWN----SMLTGYTRNGEMR 188

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           LG++    + +     +    N +VD + + G L+++   F  +   + VSW  ML G A
Sbjct: 189 LGLQFFEEMAER----DVVSWNLMVDGFVEVGDLNSSWEFFEKIPNPNTVSWVTMLCGFA 244

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
             G+  +A  LF +M       +   +  ++ A      +D+ +  F  M     I    
Sbjct: 245 RFGKIAEARRLFDQMPIR----NVVAWNAMIAAYVQNCHVDEAISLFMEMPEKNSI---- 296

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMP 475
             +  +I+   R G+L EA +L+  MP
Sbjct: 297 -SWTTVINGYVRMGKLDEARQLLNQMP 322


>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Brachypodium distachyon]
          Length = 555

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 192/509 (37%), Positives = 298/509 (58%), Gaps = 40/509 (7%)

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV-QMIHAL 140
           L+N LIRA   +     AF  F  +   G   D FT+P LLK+ +    F      +HA 
Sbjct: 45  LHNLLIRASATSPSPRLAFAAFSSILRSGDTPDRFTFPSLLKSASRLASFPRTGAQVHAQ 104

Query: 141 IYKCGYFGDIFVPNSLI----------------DS----------------YSKCGVVGV 168
             + G   D+FV N+L+                DS                Y KCG +G 
Sbjct: 105 AVRRGLLVDVFVVNTLLAMYAAFRDTRSMREVFDSCAGVADLVTWNTMLGGYVKCGEIGE 164

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAK 226
             A+++F  M +R+ VSW++M+      GEL  AR +FDEMP   R+ VSWN+++ G+A+
Sbjct: 165 --ARRVFEQMPQRNGVSWSAMVGAYAGAGELDVAREMFDEMPAIGRNVVSWNSMITGFAR 222

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            G + LA ++F+++P RN+VSW+TMV GY+ +G+M  A+ LFDRMP K +V WT +ISGY
Sbjct: 223 HGLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGY 282

Query: 287 AEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           A+     E   L+  M+ E+ + P++ T++S+L+ACA    L  G   HA I+K++   +
Sbjct: 283 AQARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLD 342

Query: 346 T--NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
           +  N+  AL+DMY+KCG  D A+ +F+ + +K++ +WNA++ GLA++G    ++ +F +M
Sbjct: 343 SEFNLGAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQM 402

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           +  G  P+  TFVGVL AC H G +D+G + F SM    G+ P+ +HYGCM+D+LGR+G 
Sbjct: 403 RRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAGL 462

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L+EA  L++SMP+ P+ +I G LLGACR H  V++A  V + ++ L     G + ++S+I
Sbjct: 463 LEEAEELIRSMPMVPDVMILGALLGACRMHKRVDVAARVQNEILGLSTQQSGCHVLISDI 522

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           +AA G W      R  ++K    K  G+S
Sbjct: 523 YAAAGKWADALYARGVLQKFGISKLRGSS 551


>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 552

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 200/552 (36%), Positives = 301/552 (54%), Gaps = 42/552 (7%)

Query: 45  LQRDPYIAPKLISSLALCRQ-MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           +  DP    ++I   AL  Q +  A  VFN IQ P + ++N +I    ++     A   +
Sbjct: 1   MHIDPSSISEVIKHYALSPQSLPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFY 60

Query: 104 LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
             M  KG+   + T+ FL K+C   +     QM+     K G+    FV N+LI  Y   
Sbjct: 61  NTMYYKGIQGSHLTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCF 120

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVS--- 216
           G   +++A+K+F  M ERD+VSWNS+I G  +     +   LF EM       D+V+   
Sbjct: 121 G--ELAMAQKVFDGMLERDVVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMK 178

Query: 217 ----------W----------------------NTILDGYAKAGEMNLAFELFEKIPHRN 244
                     W                      NT++D Y + G ++ A  +F ++  +N
Sbjct: 179 AISATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEKN 238

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           IVSW+ M+ GY+K G++  AK LF+ MP++ ++ WT +I GY+      EA +L+ +M  
Sbjct: 239 IVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMV 298

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
           + +KPD+ T+ + L+ACA  G L  G  VH  I K+  K +  V N+L+DMY KCG ++ 
Sbjct: 299 SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEK 358

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A+ VFN M  +D VSW +++ GLA++G  E AL +F +M  EG  P   TFVGVL AC H
Sbjct: 359 ALQVFNDMKTRDSVSWTSIISGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAH 418

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G +DKGV++F SME  Y + P+++HYGC++DLL RSG L  A   ++ MP+ P+ +IW 
Sbjct: 419 VGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWR 478

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL AC+ H  + LAE V   L+ L  S+ GNY + S+ +A +  W+ V  +R  M+ T 
Sbjct: 479 ILLSACKLHGNLVLAEIVSKKLLVLDPSNNGNYVLSSSTYAGSDRWDDVIKIRKLMEVTN 538

Query: 545 AQKPSGASSVEV 556
            QKP   SS+EV
Sbjct: 539 LQKPCAYSSIEV 550



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 197/411 (47%), Gaps = 49/411 (11%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +  ++ Q + +    +KL  +   +++  LI       ++ +A KVF+ + + DV  +N+
Sbjct: 84  RVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDGMLERDVVSWNS 143

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL---IY 142
           +I    Q +   +   +F +MQ   V  D+ T   ++KA +   +    +M   L   I 
Sbjct: 144 IICGYYQFNRFKKVLDLFREMQAINVRADSVT---MMKAISATCFLSEWEMGDYLVKYID 200

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G   D+++ N+LID Y + G+  +  A ++F  M E++IVSWN+MI G  K G L  A
Sbjct: 201 EHGVVVDLYLGNTLIDMYGRRGM--IDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAA 258

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVSWS------- 249
           ++LF+EMP RD +SW +++ GY+ A +   A +LF+++      P    V+ +       
Sbjct: 259 KKLFNEMPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMVSMVKPDEITVATALSACAHL 318

Query: 250 --------------------------TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                                     +++  Y K G +E A  +F+ M  +  V WT II
Sbjct: 319 GSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVFNDMKTRDSVSWTSII 378

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRF 342
           SG A  G A+ A  ++DQM + G+ P  GT + +L ACA  GL+  G++   S+ N YR 
Sbjct: 379 SGLAVNGFAESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRL 438

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ 392
                    +VD+  + G LD A +    M    D+V W  +L    +HG 
Sbjct: 439 APEMKHYGCVVDLLCRSGYLDMAYNFIKKMPIVPDVVIWRILLSACKLHGN 489


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 316/567 (55%), Gaps = 12/567 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL    +K D   D  I    +     C  +  A K+FN + + ++  YN +I    ++ 
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFVP 153
              +A  +F  +Q+ G+  D  +     +AC   K     +Q +H L  K     +I V 
Sbjct: 356 KGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQ-VHGLSMKSLCQSNICVA 414

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           N+++D Y KCG   +  A  +F  M  RD VSWN++IA   + G   +   LF  M    
Sbjct: 415 NAILDMYGKCG--ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSG 472

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS----TMVWGYSKDGDMEMAK 265
            E D  ++ ++L   A    +N   E+  +I    +   S     ++  YSK G ME A+
Sbjct: 473 MEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAE 532

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            L DR+  +T+V W  IISG++ +  ++EA + + +M E G+ PD+ T  +IL  CA   
Sbjct: 533 KLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLV 592

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            + LG ++HA I K   + +  + + LVDMY+KCG++ +   +F     +D V+WNAM+ 
Sbjct: 593 TVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVC 652

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G A HG GE+AL +F  M+ E   P+  TF+ VL AC H G ++KG+ YF+SM  +YG+ 
Sbjct: 653 GYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLD 712

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           PQ+EHY C++D++GRSG++ +AL L++ MP E +A+IW TLL  C+ H  VE+AE+    
Sbjct: 713 PQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYS 772

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +++L+  D   Y +LSNI+A  G WN+V  +R  M+    +K  G S +E+ +EVH F V
Sbjct: 773 ILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLV 832

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D+ HP+S++IY+ ++ L  ++K VG+
Sbjct: 833 GDKAHPRSKEIYENLDVLTDEMKWVGY 859



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 150/561 (26%), Positives = 257/561 (45%), Gaps = 25/561 (4%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           PT F    L++  +    KC +L    ++F  +     QRD      ++   A    +G+
Sbjct: 75  PTVFVTNCLIQMYI----KCSDLEFAFKVFDGMP----QRDTVSWNAMLFGYAGRGDIGV 126

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F+ + + DV  +N+LI   + N  + +   VFL M   G   D  T+  +LK+C+ 
Sbjct: 127 AQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSS 186

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                    IH L  K G+  D+   ++L+D Y+KC  +  S+  + F SM E++ VSW+
Sbjct: 187 LEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSI--QFFHSMPEKNWVSWS 244

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEK 239
           ++IAG V+  +L     LF EM +        ++ ++    A    + L  +L     + 
Sbjct: 245 AIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKT 304

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
               ++V  +  +  Y K  ++  A+ LF+ +P   L  +  II GYA      EA  ++
Sbjct: 305 DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMF 364

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             ++++GL  D+ +L     ACA       G++VH    K   + N  V NA++DMY KC
Sbjct: 365 RLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKC 424

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G+L  A  VF  M  +D VSWNA++     +G  EK L LF  M   G  PD++T+  VL
Sbjct: 425 GALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVL 484

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC     ++ G++    + +    L        +ID+  + G +++A +L   +  E  
Sbjct: 485 KACAGWQALNCGMEIHNRIIKSRLGLDSFVGIA-LIDMYSKCGMMEKAEKLHDRL-AEQT 542

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA---NV 536
            + W  ++         E A++    ++ + G DP N+T  + I     +   V     +
Sbjct: 543 VVSWNAIISGFSLQKQSEEAQKTFSKMLEM-GVDPDNFT-YATILDTCANLVTVELGKQI 600

Query: 537 RLQMKKTRAQKPSGASSVEVD 557
             Q+ K   Q  +  SS  VD
Sbjct: 601 HAQIIKKELQSDAYISSTLVD 621



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 211/482 (43%), Gaps = 59/482 (12%)

Query: 101 RVFLDMQEKGVF---------------TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           R F + Q K  F               T   T+  + + C+ +      +  HA +    
Sbjct: 13  RFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTE 72

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +   +FV N LI  Y KC    +  A K+F  M +RD VSWN+M+ G    G++  A++L
Sbjct: 73  FKPTVFVTNCLIQMYIKCS--DLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKL 130

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR---------------------- 243
           FD MPERD VSWN+++ GY   G+     ++F ++                         
Sbjct: 131 FDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDH 190

Query: 244 -----------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
                            ++V+ S ++  Y+K   ++ +   F  MP K  V W+ II+G 
Sbjct: 191 GGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGC 250

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
            +    +    L+ +M++AG+     T  S+  +CA    L LG ++H    K  F  + 
Sbjct: 251 VQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
            +  A +DMY KC +L +A  +FN +   +L S+NA++ G A   +G +ALG+F  ++  
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKS 370

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G G D+ +  G   AC       +G+Q  + +         +     ++D+ G+ G L E
Sbjct: 371 GLGLDEVSLSGAFRACAVIKGDLEGLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVE 429

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A  + + M V  +A+ W  ++ A  + N  E     L   +   G +P  +T  S + A 
Sbjct: 430 ACLVFEEM-VSRDAVSWNAIIAA-HEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 487

Query: 527 TG 528
            G
Sbjct: 488 AG 489



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 141/327 (43%), Gaps = 46/327 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN   ++  +IIK  L  D ++   LI   + C  M  A K+ + + +  V  +N +I  
Sbjct: 493 LNCGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 552

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
                 + +A + F  M E GV  DNFTY  +L  C       L + IHA I K     D
Sbjct: 553 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 612

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            ++ ++L+D YSKCG   +   + +F     RD V+WN+M+ G  + G   EA ++F+ M
Sbjct: 613 AYISSTLVDMYSKCG--NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM 670

Query: 210 P------------------------ERDAVSWNTILDGY----------------AKAGE 229
                                    E+    ++++L  Y                 ++G+
Sbjct: 671 QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQ 730

Query: 230 MNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAK---LLFDRMPAKTLVPWTIIISG 285
           ++ A EL E +P   + V W T++      G++E+A+       ++  +    + ++ + 
Sbjct: 731 VSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNI 790

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA  GM  E  +L   M   GLK + G
Sbjct: 791 YANAGMWNEVTKLRKMMRFNGLKKEPG 817


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 173/381 (45%), Positives = 245/381 (64%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N IL+ Y   GEM  A  LFEK+P R+ V+W+ ++   +K GD++ A   F RMP K + 
Sbjct: 49  NMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVR 108

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +ISG+ + G   EA  L+ ++E+  ++P++ T++S+LAACA+ G L LG  VH   
Sbjct: 109 SWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYS 168

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  FK N +VCN L+DMY KCG L+NA  VF  M ++ +VSW+AM+ GLAMHGQ E+AL
Sbjct: 169 TKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEAL 228

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LFS M   G  P+  TF+G+L AC+H G ID+G ++F SM  DYG++PQ+EHYGC++DL
Sbjct: 229 CLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDL 288

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
             R+G L+EA   + SMP++PN ++WG LLG C+ H  ++LAEE +  L  L   + G Y
Sbjct: 289 FSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYY 348

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            ++SNI+A    W   A VR  MK    +K SG SS+ V+  VHEF   DQ HP++E I 
Sbjct: 349 VVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDIC 408

Query: 578 QMINTLGKDLKPVGHAAKLSA 598
           ++ + L   +K  G+A K S 
Sbjct: 409 KIWDKLLVKMKRRGYAPKTSV 429



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 156/328 (47%), Gaps = 57/328 (17%)

Query: 111 VFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
           V  D FT  F+LKAC       NGK        IH L  K G+  ++F+ N +++ Y  C
Sbjct: 6   VLPDTFTCSFVLKACLKLSDVVNGKT-------IHGLFQKLGFGSNLFLQNMILNLYGLC 58

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
           G +G ++   LF  M +RD V+WN +IA L K G++  A   F  MP ++  SW +++ G
Sbjct: 59  GEMGDAML--LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISG 116

Query: 224 YAKAGEMNLAFELFEKIP---------------------------------------HRN 244
           + + G+ N A +LF K+                                         RN
Sbjct: 117 FVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRN 176

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           +   +T++  Y K G +E A+ +F  M  +T+V W+ +I+G A  G A+EA  L+ +M +
Sbjct: 177 VHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIK 236

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLD 363
            G+KP+  T I +L AC+  GL+  G +  AS+   Y           +VD++++ G L+
Sbjct: 237 LGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLE 296

Query: 364 NAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
            A      M  K + V W A+L G  +H
Sbjct: 297 EAHEFILSMPIKPNGVVWGALLGGCKVH 324



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 149/349 (42%), Gaps = 55/349 (15%)

Query: 11  FSKRRLLEEKLQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           F     L+  + NL+  C  +     LF ++     QRD      +I+ LA    +  A 
Sbjct: 41  FGSNLFLQNMILNLYGLCGEMGDAMLLFEKMP----QRDAVTWNIVIAQLAKRGDIDGAY 96

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
             F  + + +V  + ++I   VQ     +A  +F+ ++++ V  +  T   +L AC    
Sbjct: 97  GFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLG 156

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L +++H    K G+  ++ V N+LID Y KCG   +  A+++F  M ER +VSW++M
Sbjct: 157 DLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGC--LENARRVFYEMEERTVVSWSAM 214

Query: 190 IAGLVKGGELSEA-----------------------------------RRLFDEMPERDA 214
           IAGL   G+  EA                                   RR F  M     
Sbjct: 215 IAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYG 274

Query: 215 V-----SWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLF 268
           V      +  ++D +++AG +  A E    +P + N V W  ++ G     ++++A+   
Sbjct: 275 VIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAI 334

Query: 269 DRMPAKTLVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             +    L P     + +I + YAE    ++AAR+   M++ G+K   G
Sbjct: 335 KHL--SELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSG 381



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 111/263 (42%), Gaps = 42/263 (15%)

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
           RL+D +      PD  T   +L AC +   +  G  +H    K  F  N  + N ++++Y
Sbjct: 2   RLFDVL------PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLY 55

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWN-------------------------------AMLY 385
             CG + +AM +F  M ++D V+WN                               +M+ 
Sbjct: 56  GLCGEMGDAMLLFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMIS 115

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG-VQYFYSMERDYGI 444
           G    G+  +A+ LF +++DE   P++ T V VL AC   G +D G + + YS +   G 
Sbjct: 116 GFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKS--GF 173

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
              V     +ID+  + G L+ A R+   M  E   + W  ++     H   E A  +  
Sbjct: 174 KRNVHVCNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEALCLFS 232

Query: 505 CLIRLKGSDPGNYTMLSNIFAAT 527
            +I+L G  P   T +  + A +
Sbjct: 233 EMIKL-GVKPNGVTFIGLLHACS 254


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 194/588 (32%), Positives = 309/588 (52%), Gaps = 59/588 (10%)

Query: 45  LQRDPYIAPKLISSLALC--RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           L  D + + +LI+  A+   R +     +  + ++P+   +N  IR  + +    +A  +
Sbjct: 6   LIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVL 65

Query: 103 FLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           +   +Q  G   DN+TYP L KAC   +   +   I   +   G+  DIFV N++I    
Sbjct: 66  YKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLV 125

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSW 217
            CG   +  A+K+F     RD+VSWNSMI G V+ G   EA   + EM     + D V+ 
Sbjct: 126 SCG--DLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTM 183

Query: 218 -----------------------------------NTILDGYAKAGEMNLAFELFEKIPH 242
                                              N ++D Y K G +  A +LF+ + +
Sbjct: 184 IGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLFDSMTN 243

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           + +VSW+TM               LFD MP K +VPW  +I GY      KEA  L+++M
Sbjct: 244 KTMVSWTTM---------------LFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEM 288

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           +   + PD+ T++S L+AC++ G L +G+ +H  I K+    N  +  AL+DMYAKCG +
Sbjct: 289 QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKI 348

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
             A+ VF  +  ++ ++W A++ GLA+HG    A+  FS M D    PD+ TF+G+L AC
Sbjct: 349 TKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSAC 408

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
            H G +++G +YF  M   + + P+++HY CM+DLLGR+G L+EA  L++SMP+E +A++
Sbjct: 409 CHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVV 468

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG L  ACR H  V + E     L+++   D G Y +L+N++     W +    R  M++
Sbjct: 469 WGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKXRKLMRQ 528

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
              +K  G SS+EV+  V+EF V D+ HP+SEQIY+ +  L + L+ V
Sbjct: 529 RGVEKTPGCSSIEVNGIVYEFIVRDKSHPQSEQIYECLIQLTRQLELV 576



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/406 (25%), Positives = 178/406 (43%), Gaps = 61/406 (15%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           ++   ++ L    D +++  +I  L  C  +  A K+F+     D+  +N++I   V+  
Sbjct: 100 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 159

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              +A   + +M+ +G+  D  T   ++ +C       L +  H  I + G    + + N
Sbjct: 160 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLAN 219

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           +L+D Y KCG   +  A+KLF SM  + +VSW +M               LFDEMP++D 
Sbjct: 220 ALMDMYMKCG--NLESARKLFDSMTNKTMVSWTTM---------------LFDEMPDKDV 262

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------VS---------------W---- 248
           V WN ++ GY  A     A  LF ++   NI       VS               W    
Sbjct: 263 VPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHY 322

Query: 249 -------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                        + ++  Y+K G +  A  +F  +P +  + WT IISG A  G A  A
Sbjct: 323 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 382

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVD 354
              + +M +  + PD+ T + +L+AC   GL+  G K  + + +K+         + +VD
Sbjct: 383 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 442

Query: 355 MYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ---GEKA 396
           +  + G L+ A  +   M  + D V W A+ +   +HG    GE+A
Sbjct: 443 LLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERA 488


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 199/608 (32%), Positives = 327/608 (53%), Gaps = 48/608 (7%)

Query: 1   MSAPIRAPTWFSKRRLLEEK--LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
           +S   +   W +    + E   L  L +CK+L Q KQ+ AQ++   L  + + A +L++ 
Sbjct: 39  LSPITKTINWNTTHSFVRENPLLSILERCKSLVQLKQIQAQMVSTGLIENGFAASRLVAF 98

Query: 59  LALC--RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DN 115
            AL   +++    ++   I++ +V  +N  IR  V++      F ++  M   G    DN
Sbjct: 99  CALSESKELDYCTRILYRIKELNVFSWNAAIRGYVESGDIEGGFMLYKRMLLGGTLKPDN 158

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
            TYP LLK C G+    L   +   + K G+  DIFV N+ I     CG   +S+A  +F
Sbjct: 159 HTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCG--ELSVAYDVF 216

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI--------------- 220
                RD+V+WNSMI G VK G   EA +++ EM E + V  N I               
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKEM-EAEKVRPNEITMIGMISSCSQVQDL 275

Query: 221 -------------------------LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                                    +D Y K GE+  A  LF+ +  + +VSW+TMV GY
Sbjct: 276 NLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGY 335

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           ++ G +++A+ +  ++P K++VPW  IISG  +    KEA  L+ +M+   ++PD  T++
Sbjct: 336 ARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMV 395

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           + L+AC++ G L +G+ +H  I +++   +  +  ALVDMYAKCG++  A+ VF  + ++
Sbjct: 396 NCLSACSQLGALDVGIWIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQR 455

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           + ++W A++ GLA+HG  + AL  FS+M   G  PD+ TF+GVL AC H G +++G +YF
Sbjct: 456 NCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYF 515

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   + + P+++HY CM+DLLGR+G L+EA  LV++MP+  +A + G L  ACR +  
Sbjct: 516 SEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGN 575

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           V++ E     L+ +   D GNY +L+++++    W +  + R  M     +K  G S VE
Sbjct: 576 VQIGERTAFKLLEIDPQDSGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLVE 635

Query: 556 VDNEVHEF 563
           ++  VHEF
Sbjct: 636 INGIVHEF 643


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 309/567 (54%), Gaps = 71/567 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  CKN+ + K + A +IK  L +  ++  K++        +G A  +F  +++P+ +LY
Sbjct: 21  LQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLY 80

Query: 84  NTLIRACVQNSLNAQAFRVFLDM-------QEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           N +IRA   N + A A   + +M        E  +F D FT+PF                
Sbjct: 81  NAMIRAHTHNKVYALAILFYKEMLRLKDPESENPIFPDRFTFPF---------------- 124

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
              +I  C                   G+V  +L K++                A L K 
Sbjct: 125 ---VIKSCS------------------GLVCYNLGKQVH---------------AHLCKF 148

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G            P+ +    N ++D Y K   +  A ++F+ +  R+ +SW++++ G+ 
Sbjct: 149 G------------PKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHV 196

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             G M  A  LFD MP +T+V WT +ISGY   G   +A  ++ QM+  G++PD+ ++IS
Sbjct: 197 GVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIIS 256

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L ACA+ G L +G  +H   ++      T++CNAL++MY+KCG +  A  +F+ M+K D
Sbjct: 257 VLPACAQLGALEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGD 316

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           ++SW+ M+ GLA HG+  +A+ LF RMK     P+  TF+G+L AC HAGF ++G+ YF 
Sbjct: 317 VISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFD 376

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM +DY I P+VEHYGC++D+LGR+GRL +AL +++ MP++P++ IWG+LL +CR H+ +
Sbjct: 377 SMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNL 436

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ++A   ++ L  L+  D GNY +LSNI+A    W+ V+ +R  +K    +K  G+S +++
Sbjct: 437 DIAIIAMEHLEELEPDDTGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLIDI 496

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +N V EF   D   P S  I+ ++  L
Sbjct: 497 NNVVQEFVSWDDSKPFSRDIFWLLELL 523


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 304/526 (57%), Gaps = 11/526 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF+ + + +V  +  ++R  V+  + ++A  +F  M EK V +       LL+    
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRI 238

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L  M+           D+    ++I  Y  C V  +  A+ LF  M  R++VSW 
Sbjct: 239 DEACRLFDMMPE--------KDVVTRTNMIGGY--CQVGRLVEARMLFDEMPRRNVVSWT 288

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
           +MI G V+  ++  AR+LF+ MPE++ VSW  +L GY   G ++ A ELF  +P +++V+
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + M+  + ++G++  A+ +FD+M  K    W+ +I  Y  KG+  +A  L+  M+  G+
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI 408

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +P+  +LIS+L+ CA    L  G ++HA + + +F  +  V + L+ MY KCG+L  A  
Sbjct: 409 RPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQ 468

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF+    KD+V WN+++ G A HG G +AL +F  M   G  PD  TFVGVL AC++ G 
Sbjct: 469 VFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGN 528

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           + KG++ F SME  Y +  ++EHY CM+DLLGR+G+L EA+ L++ MP+E +AIIWG LL
Sbjct: 529 VKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           GACR H  ++LAE     L+ L+  + G + +LSNI+A+ G W+ VA +R  M+  R  K
Sbjct: 589 GACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSK 648

Query: 548 PSGASSVEVDNEVHEFSVCDQL-HPKSEQIYQMINTLGKDLKPVGH 592
             G S + V+ +VH+F+  D   HP+  +I +++  L   L+  G+
Sbjct: 649 YPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGY 694



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 168/332 (50%), Gaps = 40/332 (12%)

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           + C  F  I   NSLI  YS+ G   +  A+ +F  M +++I+SWNS++AG  +     E
Sbjct: 92  FYCSNF--IISRNSLITRYSRLG--QIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A+ +FD+M ER+ +SWN ++ GY   G +N A E+F+++P RN+VSW+ MV GY K+G +
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMI 207

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A+ LF +MP K +V WT+++ G  ++G   EA RL+D M E     D  T  +++   
Sbjct: 208 SEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPE----KDVVTRTNMIGGY 263

Query: 322 AESGLL-----------------------GLGMKVHASINKYRFKC----NTNVCNALVD 354
            + G L                       G        I +  F+     N     A++ 
Sbjct: 264 CQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLK 323

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            Y  CG LD A  +FN M  K +V+ NAM+     +G+  KA  +F +M+++    D+ T
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK----DEGT 379

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           +  ++      G     ++ F  M+R+ GI P
Sbjct: 380 WSAMIKVYERKGLELDALELFRMMQRE-GIRP 410



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 33/206 (16%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL+  +++ AQ+++     D Y+A  L+S    C  +  A +VF+     DV ++N++I 
Sbjct: 427 NLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIIT 486

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+ L  +A RVF DM   G+  D+ T+  +L AC+               Y      
Sbjct: 487 GYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS---------------YTGNVKK 531

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + + NS+   Y                   E+ I  +  M+  L + G+L+EA  L ++
Sbjct: 532 GLEIFNSMETKYQV-----------------EQKIEHYACMVDLLGRAGKLNEAMDLIEK 574

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLA 233
           MP E DA+ W  +L       +++LA
Sbjct: 575 MPMEADAIIWGALLGACRTHMKLDLA 600



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 42/282 (14%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRAC 90
           NQ   +  ++ ++  +++      ++     C ++  A ++FN +    V   N +I   
Sbjct: 297 NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCF 356

Query: 91  VQNSLNAQAFRVFLDMQE---------------KGVFTDNF-------------TYPFL- 121
            QN    +A +VF  M+E               KG+  D                +P L 
Sbjct: 357 GQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLI 416

Query: 122 --LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
             L  C G       + IHA + +  +  D++V + L+  Y KCG   ++ AK++F    
Sbjct: 417 SVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG--NLAKAKQVFDRFA 474

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE 235
            +D+V WNS+I G  + G   EA R+F +M       D V++  +L   +  G +    E
Sbjct: 475 VKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLE 534

Query: 236 LFEKIP-----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           +F  +       + I  ++ MV    + G +  A  L ++MP
Sbjct: 535 IFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMP 576


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 197/564 (34%), Positives = 300/564 (53%), Gaps = 67/564 (11%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q  AQI+   LQ + ++A K+++  A    +  A+ VF+ I +P   LYN++IRA  ++
Sbjct: 97  QQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRH 156

Query: 94  SLNAQA---FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
                       +  M   G+  DNFT PF+LK+C   +   + + +H    + G  GD 
Sbjct: 157 GXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDF 216

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           +V  SLID Y KCGV+G                                 +AR+LFD+M 
Sbjct: 217 YVGASLIDMYVKCGVIG---------------------------------DARKLFDKMI 243

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
            RD  SWN ++ GY K GE+ +A +LFE++ HRNIVSW+ M+ GY+++G  E A  LFD 
Sbjct: 244 VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDE 303

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           M                          L D  E   +KP+  T++S+L ACA+S  L  G
Sbjct: 304 M--------------------------LQDGSE---MKPNWVTIVSVLPACAQSAALERG 334

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KDLVSWNAMLYGLA 388
            ++H   N      N++V  AL  MYAKC SL  A   F+ + +  K+L++WN M+   A
Sbjct: 335 RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYA 394

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG G +A+ +F  M   G  PD  TF+G+L  C+H+G ID G+ +F  M   + + P+V
Sbjct: 395 SHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRV 454

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHY C++DLLGR+GRL EA  L+  MP++    +WG LL ACR H  +E+AE     L  
Sbjct: 455 EHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFV 514

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L+  + GNY +LSN++A  G W +V  +R  +K    +K  G S +E++ + H F   D+
Sbjct: 515 LEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADK 574

Query: 569 LHPKSEQIYQMINTLGKDLKPVGH 592
            HP++++IY+ +  L + +K  G+
Sbjct: 575 SHPQAKEIYKFLEALPEKIKMAGY 598



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 135/335 (40%), Gaps = 54/335 (16%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +   ++LF ++I     RD      LI+      ++G+A  +F  ++  ++  +  
Sbjct: 228 KCGVIGDARKLFDKMIV----RDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTA 283

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKG--VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           +I    QN    QA  +F +M + G  +  +  T   +L AC         + IH     
Sbjct: 284 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 343

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   +  V  +L   Y+KC  +  +      ++   +++++WN+MI      G   EA 
Sbjct: 344 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 403

Query: 204 RLFDEM----PERDAVSWNTILDG-----------------------------YA----- 225
            +F+ M     + DAV++  +L G                             YA     
Sbjct: 404 SIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDL 463

Query: 226 --KAGEMNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---- 278
             +AG +  A EL  ++P +   S W  ++       ++E+A+L   R+    L P    
Sbjct: 464 LGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL--FVLEPDNSG 521

Query: 279 -WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + ++ + YAE GM +E  +L   ++  G+K   G
Sbjct: 522 NYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPG 556



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 5/199 (2%)

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P   +   I         + LG + HA I  +  + N  +   +V MYA  G LD+A+ V
Sbjct: 75  PHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVV 134

Query: 369 FNGMTKKDLVSWNAMLYGLAMHG---QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
           F+ +     + +N+++     HG        L  ++RM   G   D +T   VL +C   
Sbjct: 135 FDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADL 194

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
             +  G +  +      G+         +ID+  + G + +A +L   M V   A  W  
Sbjct: 195 SRVCMG-RCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMA-SWNA 252

Query: 486 LLGACRKHNAVELAEEVLD 504
           L+    K   + +AE++ +
Sbjct: 253 LIAGYMKEGEIGVAEDLFE 271


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 190/575 (33%), Positives = 314/575 (54%), Gaps = 18/575 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           ++ +  ++  ++++ ++   +IS L    ++G A +VF+ + + DV  +N++I   VQ  
Sbjct: 151 EIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAG 210

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
               AF++F +M   G+     T   L++AC G     L + +H  +   G   DI V  
Sbjct: 211 CFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLT 270

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           S +D YSK G   +  A+ +F  M  R++VSWN+MI+G V+ G + E+  LF  +     
Sbjct: 271 SFVDMYSKMG--DIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSG 328

Query: 213 --DAVSWNTILDGYAKAGEM-------NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
             D  +  ++L G ++   +         A   FE     N++  + +V  YSK G ++ 
Sbjct: 329 GFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFES----NLILSTAIVDLYSKCGSLKQ 384

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A  +F+RM  + ++ WT ++ G A+ G A++A RL+ QM+E G+  +  T +S++ +CA 
Sbjct: 385 ATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAH 444

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF-NGMTKKDLVSWNA 382
            G L  G  +H  + +  F  +     ALVDMYAKCG ++ A  +F +G   KD+V WN+
Sbjct: 445 LGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNS 504

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G  MHG G +A+G++ +M +EG  P++ TF+ +L AC+H+  +++G+  F SMERD+
Sbjct: 505 MITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDH 564

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I P  +HY C++DLL R+GR +EA  L++ MP +P   +   LL  CR H  + L  + 
Sbjct: 565 NIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQT 624

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D L+ L   +PG Y MLSNI+A    W+KV  +R  M+    +K  G S VE  N VH 
Sbjct: 625 SDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHT 684

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           F   D  HP  E+IY  + +L   ++  G+    S
Sbjct: 685 FFAGDNSHPNWEEIYHFLESLRSAVETSGYVPDTS 719



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 251/513 (48%), Gaps = 23/513 (4%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           KNL   K   AQII   L  D ++A KL+ + +  R +  A  VF+    P   L N ++
Sbjct: 43  KNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAML 102

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              +Q+    +   +F  M+ + +  D+ +  F LKAC     + +   I +   + G  
Sbjct: 103 CGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGME 162

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            + FV +S+I    K G +G   A+++F  M  +D+V WNS+I G V+ G    A +LF 
Sbjct: 163 KNRFVGSSMISFLVKFGKIGE--AQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFF 220

Query: 208 EMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---------RNIVSWSTMVWG 254
           EM     +   ++  +++      G + L      K  H          +I+  ++ V  
Sbjct: 221 EMHGSGIKPSPITMTSLIQACGGIGNLKLG-----KCMHGYVLGLGLGNDILVLTSFVDM 275

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           YSK GD+E A+ +F +MP + LV W  +ISG    G+  E+  L+ ++  +    D  T+
Sbjct: 276 YSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTI 335

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S+L  C+++  L  G  +H    +  F+ N  +  A+VD+Y+KCGSL  A  VFN M  
Sbjct: 336 VSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKD 394

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +++++W AML GLA +G  E AL LF++M++EG   +  TFV ++ +C H G + +G   
Sbjct: 395 RNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSI 454

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
              + R  G    + +   ++D+  + G++  A R+     +  + ++W +++     H 
Sbjct: 455 HGHLFR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHG 513

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
               A  +   +I  +G  P   T LS + A +
Sbjct: 514 HGYQAVGIYHKMIE-EGLKPNQTTFLSLLSACS 545


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 304/526 (57%), Gaps = 11/526 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF+ + + +V  +  ++R  V+  + ++A  +F  M EK V +       LL+    
Sbjct: 179 AREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLLQEGRI 238

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L  M+           D+    ++I  Y  C V  +  A+ LF  M  R++VSW 
Sbjct: 239 DEACRLFDMMPE--------KDVVTRTNMIGGY--CQVGRLVEARMLFDEMPRRNVVSWT 288

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
           +MI G V+  ++  AR+LF+ MPE++ VSW  +L GY   G ++ A ELF  +P +++V+
Sbjct: 289 TMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + M+  + ++G++  A+ +FD+M  K    W+ +I  Y  KG+  +A  L+  M+  G+
Sbjct: 349 CNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGI 408

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +P+  +LIS+L+ CA    L  G ++HA + + +F  +  V + L+ MY KCG+L  A  
Sbjct: 409 RPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQ 468

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF+    KD+V WN+++ G A HG G +AL +F  M   G  PD  TFVGVL AC++ G 
Sbjct: 469 VFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGN 528

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           + KG++ F SME  Y +  ++EHY CM+DLLGR+G+L EA+ L++ MP+E +AIIWG LL
Sbjct: 529 VKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALL 588

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           GACR H  ++LAE     L+ L+  + G + +LSNI+A+ G W+ VA +R  M+  R  K
Sbjct: 589 GACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRVSK 648

Query: 548 PSGASSVEVDNEVHEFSVCDQL-HPKSEQIYQMINTLGKDLKPVGH 592
             G S + V+ +VH+F+  D   HP+  +I +++  L   L+  G+
Sbjct: 649 YPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGY 694



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 168/332 (50%), Gaps = 40/332 (12%)

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           + C  F  I   NSLI  YS+ G   +  A+ +F  M +++I+SWNS++AG  +     E
Sbjct: 92  FYCSNF--IISRNSLITRYSRLG--QIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQE 147

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A+ +FD+M ER+ +SWN ++ GY   G +N A E+F+++P RN+VSW+ MV GY K+G +
Sbjct: 148 AQNMFDKMSERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMI 207

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A+ LF +MP K +V WT+++ G  ++G   EA RL+D M E     D  T  +++   
Sbjct: 208 SEAETLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPE----KDVVTRTNMIGGY 263

Query: 322 AESGLL-----------------------GLGMKVHASINKYRFKC----NTNVCNALVD 354
            + G L                       G        I +  F+     N     A++ 
Sbjct: 264 CQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLK 323

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            Y  CG LD A  +FN M  K +V+ NAM+     +G+  KA  +F +M+++    D+ T
Sbjct: 324 GYTNCGRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREK----DEGT 379

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           +  ++      G     ++ F  M+R+ GI P
Sbjct: 380 WSAMIKVYERKGLELDALELFRMMQRE-GIRP 410



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 33/206 (16%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL+  +++ AQ+++     D Y+A  L+S    C  +  A +VF+     DV ++N++I 
Sbjct: 427 NLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIIT 486

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+ L  +A RVF DM   G+  D+ T+  +L AC+               Y      
Sbjct: 487 GYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS---------------YTGNVKK 531

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + + NS+   Y                   E+ I  +  M+  L + G+L+EA  L ++
Sbjct: 532 GLEIFNSMETKYQV-----------------EQKIEHYACMVDLLGRAGKLNEAMDLIEK 574

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLA 233
           MP E DA+ W  +L       +++LA
Sbjct: 575 MPMEADAIIWGALLGACRTHMKLDLA 600



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/282 (22%), Positives = 117/282 (41%), Gaps = 42/282 (14%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRAC 90
           NQ   +  ++ ++  +++      ++     C ++  A ++FN +    V   N +I   
Sbjct: 297 NQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVACNAMILCF 356

Query: 91  VQNSLNAQAFRVFLDMQE---------------KGVFTDNF-------------TYPFL- 121
            QN    +A +VF  M+E               KG+  D                +P L 
Sbjct: 357 GQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLI 416

Query: 122 --LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
             L  C G       + IHA + +  +  D++V + L+  Y KCG   ++ AK++F    
Sbjct: 417 SVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCG--NLAKAKQVFDRFA 474

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE 235
            +D+V WNS+I G  + G   EA R+F +M       D V++  +L   +  G +    E
Sbjct: 475 VKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLE 534

Query: 236 LFEKIP-----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           +F  +       + I  ++ MV    + G +  A  L ++MP
Sbjct: 535 IFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMP 576


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 204/585 (34%), Positives = 316/585 (54%), Gaps = 22/585 (3%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +  C NL+  +++   ++KL  + D YIA   I   +    + LA  +F+++   D+  +
Sbjct: 149 IRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTW 208

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I     N   A+A  VF +M+ K V  D+ T   LL  C   +      +IH    K
Sbjct: 209 NAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIK 268

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+FV N+LI+ Y+K G   +  A+ +F  M  RDIVSWNS++A   +  +   A 
Sbjct: 269 LGLEFDLFVCNALINMYAKFG--ELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIAL 326

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST------------- 250
            ++++M      S   + D        ++A EL   +  R+I  + T             
Sbjct: 327 GVYNKMH-----SIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGN 381

Query: 251 -MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE-AGLK 308
            ++  Y+K G ++ A+ +F+ +P K ++ W  +I+GY++ G+A EA  +Y  M   +G  
Sbjct: 382 AIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAV 441

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P+ GT +SIL A ++ G L  GMK H  + K     +  V   LVDMY KCG L +A+S+
Sbjct: 442 PNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSL 501

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F  +  +  VSWNA++    +HG G KA+ LF  M+ EG  PD  TFV +L AC+H+G +
Sbjct: 502 FYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLV 561

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           D+G   F  M+  YGI P ++HYGCM+DL GR+G L++A   V++MPV P+  +WG LLG
Sbjct: 562 DEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLG 621

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACR H  VEL   V D L++++  + G Y +LSNI+A  G W  V  VR   +    +K 
Sbjct: 622 ACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKT 681

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            G SS+EVD ++  F   +Q HPK E+IY  +  L   +K +G+ 
Sbjct: 682 PGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYV 726



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/529 (26%), Positives = 269/529 (50%), Gaps = 53/529 (10%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  ++  KQL A ++     +  +++ KLI+  A    +  A   F+ IQ  DV+ +N++
Sbjct: 53  CTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSM 112

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVF-TDNFTYPFLLKAC----NGKNWFHLVQMIHALI 141
           I A  +      A   F +        +D++T+P +++AC    +G+        +H L+
Sbjct: 113 ISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRK-------VHCLV 165

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D+++  S I  YS+ G   VSLA  LF +M  RDI +WN+MI+G    G+++E
Sbjct: 166 LKLGFECDVYIAASFIHFYSRFGF--VSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAE 223

Query: 202 ARRLFDEMPERDA--------------VSWNTILDG---YAKAGEMNLAFELFEKIPHRN 244
           A  +FDEM  +                V  + I+ G   +  A ++ L F+LF       
Sbjct: 224 ALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLF------- 276

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
               + ++  Y+K G++  A+ +F++M  + +V W  +++ + +      A  +Y++M  
Sbjct: 277 --VCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHS 334

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLD 363
            G+ PD  TL+S+ +  AE G       +H  + +   F  +  + NA++DMYAK G +D
Sbjct: 335 IGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFID 394

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCAC 422
           +A  VF G+  KD++SWN+++ G + +G   +A+ ++S M+   G  P++ T+V +L A 
Sbjct: 395 SARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAH 454

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +  G + +G++    + +++ +   +    C++D+ G+ G+L +AL L   +P   +++ 
Sbjct: 455 SQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVP-HQSSVS 512

Query: 483 WGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           W  ++     H     AV+L +E     ++ +G  P + T +S + A +
Sbjct: 513 WNAIISCHGLHGYGLKAVKLFKE-----MQSEGVKPDHITFVSLLSACS 556


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 185/532 (34%), Positives = 303/532 (56%), Gaps = 13/532 (2%)

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           Q P+  L NT++RA      + +A  +++ MQ  GV  +NFTYPF+LK C  +      +
Sbjct: 93  QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGE 152

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           ++H  + + G+  D+FV  +L+D Y+KCG +G   A ++F  M  RD+V W +MI    +
Sbjct: 153 VVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGD--AHEVFDRMLIRDVVCWTAMITLYEQ 210

Query: 196 GGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS---- 247
                +A  LF +M E     D ++  ++     + G+  +A  +         +     
Sbjct: 211 AERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSV 270

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            +++V  Y+K G++E A+L+FDRM  +  + W  ++SGY + G   +A  L++QM+ +  
Sbjct: 271 GNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASEC 330

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            P+  T + +++AC+  G   LG K+H  +   +   +T + NA++DMY KCG LD A+ 
Sbjct: 331 DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVE 390

Query: 368 VFNG--MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
           +FN   + ++D+ SWN ++ G  +HG G++AL LFSRM+ EG  P+  TF  +L AC+HA
Sbjct: 391 MFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHA 450

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G ID+G + F  M +   + P+++HY CM+D+LGR+G L EA RL++ +P  P+  +WG 
Sbjct: 451 GLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGA 509

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LL ACR H   EL E   + L +L+    G Y ++SNI+AA+  W +V  VR  MK    
Sbjct: 510 LLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGL 569

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +KP+  S +E   EVH F   DQ  P   ++Y+ + +L  ++K VG+   LS
Sbjct: 570 KKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLS 621



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 177/369 (47%), Gaps = 15/369 (4%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
            Q+++     D ++   L+   A C ++G A +VF+ +   DV  +  +I    Q     
Sbjct: 156 GQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPL 215

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           +A  +F  MQE+G   D  T   +  A        +   +H      G+ GD+ V NS++
Sbjct: 216 KALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIV 275

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERD 213
             Y+KCG   V  A+ +F  M ER+ +SWNSM++G  + G  ++A  LF++M     + +
Sbjct: 276 GMYAKCG--NVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPN 333

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAKLLFD 269
            V+   ++   +  G  +L  +L   +    +   +T+       Y K GD++ A  +F+
Sbjct: 334 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFN 393

Query: 270 --RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
              +  + +  W ++ISGY   G  KEA  L+ +M+  G++P+D T  SIL+AC+ +GL+
Sbjct: 394 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 453

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--DLVSWNAMLY 385
             G K  A + K   +        +VDM  + G L+ A  +   +  +  D V W A+L 
Sbjct: 454 DEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV-WGALLL 512

Query: 386 GLAMHGQGE 394
              +HG  E
Sbjct: 513 ACRIHGNTE 521



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 117/245 (47%), Gaps = 18/245 (7%)

Query: 255 YSKDGDMEMAKLLFD----RMPAKTLVPWTII----ISGYAEKGMAKEAARLYDQMEEAG 306
           YSK GD+  A+ LFD         T  P + +    +  YA  G + EA  LY  M+  G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           +  ++ T   +L  CA       G  VH  + +  F  +  V  ALVDMYAKCG + +A 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLCACT 423
            VF+ M  +D+V W AM   + ++ Q E   KAL LF +M++EGF  D+ T + V  A  
Sbjct: 188 EVFDRMLIRDVVCWTAM---ITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVG 244

Query: 424 HAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
             G     +  + Y++    G +  V     ++ +  + G ++ A RLV     E N I 
Sbjct: 245 QLGDGRMAISVHGYAVLN--GFIGDVSVGNSIVGMYAKCGNVERA-RLVFDRMEERNGIS 301

Query: 483 WGTLL 487
           W ++L
Sbjct: 302 WNSML 306


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  351 bits (901), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 186/536 (34%), Positives = 305/536 (56%), Gaps = 12/536 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF+ + + ++  +  +I    Q      A  +FLDM+  G   D FTY  +L AC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSW 186
                L + +H+ + + G   D+ V  SL+D Y+KC   G V  ++K+F  M E +++SW
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 187 NSMIAGLVKGGELS-EARRLFDEMP----ERDAVSWNTILDGYAK-----AGEMNLAFEL 236
            ++I    + GE   EA  LF +M       +  S++++L           GE   ++ +
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
              I   N V  ++++  Y++ G ME A+  FD +  K LV +  I+ GYA+   ++EA 
Sbjct: 189 KLGIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
            L++++ + G+     T  S+L+  A  G +G G ++H  + K  +K N  +CNAL+ MY
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           ++CG+++ A  VFN M  ++++SW +M+ G A HG   +AL +F +M + G  P++ T+V
Sbjct: 308 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 367

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            VL AC+H G I +G ++F SM +++GI+P++EHY CM+DLLGRSG L EA+  + SMP+
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 427

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
             +A++W TLLGACR H   EL     + ++  +  DP  Y +LSN+ A+ G W  V  +
Sbjct: 428 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 487

Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           R  MK+    K +G S +EV+N VH F V +  HP++ QIYQ ++ L   +K +G+
Sbjct: 488 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 543



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 187/377 (49%), Gaps = 20/377 (5%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL---AIKVFNDIQDPDVHLYNTLIRAC 90
           KQL +++I+L L  D  +   L+   A C   G    + KVF  + + +V  +  +I A 
Sbjct: 76  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 135

Query: 91  VQN-SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            Q+   + +A  +F  M    +  ++F++  +LKAC   +  +  + +++   K G    
Sbjct: 136 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 195

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V NSLI  Y++ G   +  A+K F  + E+++VS+N+++ G  K  +  EA  LF+E+
Sbjct: 196 NCVGNSLISMYARSG--RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 253

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDGDM 261
            +      A ++ ++L G A  G M    ++  ++       N    + ++  YS+ G++
Sbjct: 254 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 313

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A  +F+ M  + ++ WT +I+G+A+ G A  A  ++ +M E G KP++ T +++L+AC
Sbjct: 314 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 373

Query: 322 AESGLLGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           +  G++  G K   S+ K      +     C  +VD+  + G L  AM   N M    D 
Sbjct: 374 SHVGMISEGQKHFNSMYKEHGIVPRMEHYAC--MVDLLGRSGLLVEAMEFINSMPLMADA 431

Query: 378 VSWNAMLYGLAMHGQGE 394
           + W  +L    +HG  E
Sbjct: 432 LVWRTLLGACRVHGNTE 448



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C NL+     +Q+++  +KL +     +   LIS  A   +M  A K F+ + + ++
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 227

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YN ++    +N  + +AF +F ++ + G+    FT+  LL            + IH  
Sbjct: 228 VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 287

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K GY  +  + N+LI  YS+CG   +  A ++F  M +R+++SW SMI G  K G  +
Sbjct: 288 LLKGGYKSNQCICNALISMYSRCG--NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 345

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNIV----SWSTM 251
            A  +F +M E     + +++  +L   +  G ++   + F  +     IV     ++ M
Sbjct: 346 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 405

Query: 252 VWGYSKDGDMEMAKLLFDRMP--AKTLVPWTII----ISGYAEKGMAKEAARLYDQMEEA 305
           V    + G +  A    + MP  A  LV  T++    + G  E G  + AA +  + E  
Sbjct: 406 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG--RHAAEMILEQE-- 461

Query: 306 GLKPDD 311
              PDD
Sbjct: 462 ---PDD 464



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 105/236 (44%), Gaps = 21/236 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +Q+  +++K   + +  I   LIS  + C  +  A +VFN+++D +V  + ++I  
Sbjct: 278 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 337

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
             ++    +A  +F  M E G   +  TY  +L AC+       G+  F+ +   H ++ 
Sbjct: 338 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 397

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSE 201
           +  ++        ++D   + G+  +  A +   SM    D + W +++      G    
Sbjct: 398 RMEHYA------CMVDLLGRSGL--LVEAMEFINSMPLMADALVWRTLLGACRVHGNTEL 449

Query: 202 ARR----LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
            R     + ++ P+ D  ++  + + +A AG+     ++ + +  RN++  +   W
Sbjct: 450 GRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW 504


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 208/598 (34%), Positives = 316/598 (52%), Gaps = 35/598 (5%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L++ +   QL A  +K D   D  +    +   A C  M  A  +F++ ++ + 
Sbjct: 288 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 347

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YN +I    Q     +A  +F  +   G+  D  +   + +AC           I+ L
Sbjct: 348 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 407

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K     D+ V N+ ID Y KC    ++ A ++F  M  RD VSWN++IA   + G+  
Sbjct: 408 AIKSSLSLDVCVANAAIDMYGKCQ--ALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 465

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MV 252
           E   LF  M     E D  ++ +IL      G +    E+   I    + S S+    ++
Sbjct: 466 ETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCSLI 524

Query: 253 WGYSKDGDMEMAKLLFDR----------------MPAKTL----VPWTIIISGYAEKGMA 292
             YSK G +E A+ +  R                M  K L    V W  IISGY  K  +
Sbjct: 525 DMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQS 584

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           ++A  L+ +M E G+ PD  T  ++L  CA     GLG ++HA + K   + +  +C+ L
Sbjct: 585 EDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTL 644

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VDMY+KCG L ++  +F    ++D V+WNAM+ G A HG+GE+A+ LF RM  E   P+ 
Sbjct: 645 VDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNH 704

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF+ +L AC H G IDKG++YFY M+RDYG+ PQ+ HY  M+D+LG+SG++K AL L++
Sbjct: 705 VTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIR 764

Query: 473 SMPVEPNAIIWGTLLGACRKH-NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
            MP E + +IW TLLG C  H N VE+AEE    L+RL   D   YT+LSN++A  G W 
Sbjct: 765 EMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWE 824

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           KV+++R  M+  + +K  G S VE+ +E+H F V D+ HP+ E+IY+ +  +  ++KP
Sbjct: 825 KVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP 882



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 228/458 (49%), Gaps = 18/458 (3%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD     K+I+  +    M  A   FN +   DV  +N+++   +QN  + ++  VF+DM
Sbjct: 112 RDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM 171

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
             +G+  D  T+  +LK C+      L   IH ++ + G   D+   ++L+D Y+K    
Sbjct: 172 GREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRF 231

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA-VS---WNTILD 222
             SL  ++F  + E++ VSW+++IAG V+   LS A + F EM + +A VS   + ++L 
Sbjct: 232 VESL--RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 289

Query: 223 GYAKAGEMNL-----AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             A   E+ L     A  L        IV  +T+   Y+K  +M+ A++LFD        
Sbjct: 290 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDM-YAKCDNMQDAQILFDNSENLNRQ 348

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +  +I+GY+++    +A  L+ ++  +GL  D+ +L  +  ACA    L  G++++   
Sbjct: 349 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 408

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K     +  V NA +DMY KC +L  A  VF+ M ++D VSWNA++     +G+G + L
Sbjct: 409 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 468

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MID 456
            LF  M      PD++TF  +L ACT  G +  G++   S+ +    +      GC +ID
Sbjct: 469 FLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSG--MASNSSVGCSLID 525

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           +  + G ++EA ++        N  + GT+    + HN
Sbjct: 526 MYSKCGMIEEAEKIHSRFFQRAN--VSGTMEELEKMHN 561



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 205/474 (43%), Gaps = 54/474 (11%)

Query: 99  AFRVFLDM--QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
           +F  F D   Q   V T NF++ F  K C  +    L +  HA +   G+    FV N L
Sbjct: 32  SFSYFTDFLNQVNSVSTTNFSFVF--KECAKQGALELGKQAHAHMIISGFRPTTFVLNCL 89

Query: 157 IDSYSKC-GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215
           +  Y+     V  S+   +F  M  RD+VSWN MI G  K  ++ +A   F+ MP RD V
Sbjct: 90  LQVYTNSRDFVSASM---VFDKMPLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVV 146

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHR-------------------------------- 243
           SWN++L GY + GE   + E+F  +                                   
Sbjct: 147 SWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIV 206

Query: 244 -------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
                  ++V+ S ++  Y+K      +  +F  +P K  V W+ II+G  +  +   A 
Sbjct: 207 VRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLAL 266

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
           + + +M++           S+L +CA    L LG ++HA   K  F  +  V  A +DMY
Sbjct: 267 KFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMY 326

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           AKC ++ +A  +F+     +  S+NAM+ G +    G KAL LF R+   G G D+ +  
Sbjct: 327 AKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLS 386

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           GV  AC     + +G+Q  Y +     +   V      ID+ G+   L EA R+   M  
Sbjct: 387 GVFRACALVKGLSEGLQ-IYGLAIKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR- 444

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATG 528
             +A+ W  ++ A   H       E L   + +  S  +P  +T  S + A TG
Sbjct: 445 RRDAVSWNAIIAA---HEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACTG 495



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 146/578 (25%), Positives = 248/578 (42%), Gaps = 83/578 (14%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L  T    Q+   ++++    D   A  L+   A  ++   +++VF  I + + 
Sbjct: 187 LKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNS 246

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ +I  CVQN+L + A + F +MQ+         Y  +L++C   +   L   +HA 
Sbjct: 247 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 306

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  +  D  V  + +D Y+KC    +  A+ LF +    +  S+N+MI G  +     
Sbjct: 307 ALKSDFAADGIVRTATLDMYAKCD--NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGF 364

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-- 254
           +A  LF  +       D +S + +    A    ++   +++  +  ++ +S    V    
Sbjct: 365 KALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCVANAA 423

Query: 255 ---YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              Y K   +  A  +FD M  +  V W  II+ + + G   E   L+  M  + ++PD+
Sbjct: 424 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 483

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA------ 365
            T  SIL AC   G LG GM++H+SI K     N++V  +L+DMY+KCG ++ A      
Sbjct: 484 FTFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 542

Query: 366 ----------MSVFNGMTKKDL----VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
                     M     M  K L    VSWN+++ G  M  Q E A  LF+RM + G  PD
Sbjct: 543 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 602

Query: 412 KYTFVGVLCACT-----------HAGFIDKGVQ-------------------------YF 435
           K+T+  VL  C            HA  I K +Q                         + 
Sbjct: 603 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE 662

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGACRK 492
            S+ RD+        +  MI      G+ +EA++L + M +E   PN + + ++L AC  
Sbjct: 663 KSLRRDFVT------WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAH 716

Query: 493 HNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATG 528
              ++   E    + R  G DP   +Y+ + +I   +G
Sbjct: 717 MGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 754


>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
          Length = 569

 Score =  351 bits (900), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 199/581 (34%), Positives = 306/581 (52%), Gaps = 72/581 (12%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  + + KQ+  QII     +  ++  KL+S       +  A KVF  I++P   ++N +
Sbjct: 44  CDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQM 103

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           IR   Q+    +   ++  M E     + FTY FL+  C         + +H  +   GY
Sbjct: 104 IRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSXLLREGEQVHGRVVANGY 163

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             ++FV  SL++ Y+                            IAG   G  + +ARR+F
Sbjct: 164 CTNVFVRTSLVNLYA----------------------------IAGGYDG--VRKARRVF 193

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           DE+ +R                               NIVSW++++ GY + GD++ A+ 
Sbjct: 194 DEIVDR-------------------------------NIVSWNSLLAGYVRCGDVDGARR 222

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +FD MP + +V WT +I+G A+ G  K+A  L+ +M  AG+K D   L++ L+ACAE G 
Sbjct: 223 IFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGD 282

Query: 327 LGLGMKVHASINKYRFKCN----TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           L LG  +H+ I++     N     ++ N+L+ MYA CG +D A  VF GM ++  +SW +
Sbjct: 283 LKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWTS 342

Query: 383 MLYGLAMHGQGEKALGLFSRMK----DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           M+ G A  G  E+ALG+F  M+    DEG  PD  TF+GVLCAC+HAGF+D+G  +F  M
Sbjct: 343 MITGFAKQGHAEEALGVFQWMQRLGTDEG-RPDGITFIGVLCACSHAGFVDQGRHFFECM 401

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            + +GI+P++EHYGCM+DLL R+G L EA RL +SMP++PN  +WG LLG CR H   EL
Sbjct: 402 NKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLXESMPMKPNDAVWGALLGGCRIHKNAEL 461

Query: 499 AEEVLDCLI-RLKGSDPGNY-TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           A  V   L+  LK      Y  +LSN++A    W  VA VR +M +   +KP+G S V++
Sbjct: 462 ASHVAQKLVLELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQI 521

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +  VH+F   D  H  +  +Y+M++ + +  K  G+   +S
Sbjct: 522 NGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDIS 562


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 208/598 (34%), Positives = 316/598 (52%), Gaps = 35/598 (5%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L++ +   QL A  +K D   D  +    +   A C  M  A  +F++ ++ + 
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNR 305

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YN +I    Q     +A  +F  +   G+  D  +   + +AC           I+ L
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGL 365

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K     D+ V N+ ID Y KC    ++ A ++F  M  RD VSWN++IA   + G+  
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQ--ALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 423

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MV 252
           E   LF  M     E D  ++ +IL      G +    E+   I    + S S+    ++
Sbjct: 424 ETLFLFVSMLRSRIEPDEFTFGSILKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCSLI 482

Query: 253 WGYSKDGDMEMAKLLFDR----------------MPAKTL----VPWTIIISGYAEKGMA 292
             YSK G +E A+ +  R                M  K L    V W  IISGY  K  +
Sbjct: 483 DMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQS 542

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           ++A  L+ +M E G+ PD  T  ++L  CA     GLG ++HA + K   + +  +C+ L
Sbjct: 543 EDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTL 602

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VDMY+KCG L ++  +F    ++D V+WNAM+ G A HG+GE+A+ LF RM  E   P+ 
Sbjct: 603 VDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNH 662

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF+ +L AC H G IDKG++YFY M+RDYG+ PQ+ HY  M+D+LG+SG++K AL L++
Sbjct: 663 VTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIR 722

Query: 473 SMPVEPNAIIWGTLLGACRKH-NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
            MP E + +IW TLLG C  H N VE+AEE    L+RL   D   YT+LSN++A  G W 
Sbjct: 723 EMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWE 782

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           KV+++R  M+  + +K  G S VE+ +E+H F V D+ HP+ E+IY+ +  +  ++KP
Sbjct: 783 KVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP 840



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 131/458 (28%), Positives = 228/458 (49%), Gaps = 18/458 (3%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD     K+I+  +    M  A   FN +   DV  +N+++   +QN  + ++  VF+DM
Sbjct: 70  RDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDM 129

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
             +G+  D  T+  +LK C+      L   IH ++ + G   D+   ++L+D Y+K    
Sbjct: 130 GREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRF 189

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA-VS---WNTILD 222
             SL  ++F  + E++ VSW+++IAG V+   LS A + F EM + +A VS   + ++L 
Sbjct: 190 VESL--RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 223 GYAKAGEMNL-----AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             A   E+ L     A  L        IV  +T+   Y+K  +M+ A++LFD        
Sbjct: 248 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDM-YAKCDNMQDAQILFDNSENLNRQ 306

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +  +I+GY+++    +A  L+ ++  +GL  D+ +L  +  ACA    L  G++++   
Sbjct: 307 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLA 366

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K     +  V NA +DMY KC +L  A  VF+ M ++D VSWNA++     +G+G + L
Sbjct: 367 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 426

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MID 456
            LF  M      PD++TF  +L ACT  G +  G++   S+ +    +      GC +ID
Sbjct: 427 FLFVSMLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKSG--MASNSSVGCSLID 483

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           +  + G ++EA ++        N  + GT+    + HN
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRAN--VSGTMEELEKMHN 519



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 146/578 (25%), Positives = 248/578 (42%), Gaps = 83/578 (14%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L  T    Q+   ++++    D   A  L+   A  ++   +++VF  I + + 
Sbjct: 145 LKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNS 204

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ +I  CVQN+L + A + F +MQ+         Y  +L++C   +   L   +HA 
Sbjct: 205 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 264

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  +  D  V  + +D Y+KC    +  A+ LF +    +  S+N+MI G  +     
Sbjct: 265 ALKSDFAADGIVRTATLDMYAKCD--NMQDAQILFDNSENLNRQSYNAMITGYSQEEHGF 322

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-- 254
           +A  LF  +       D +S + +    A    ++   +++  +  ++ +S    V    
Sbjct: 323 KALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-GLAIKSSLSLDVCVANAA 381

Query: 255 ---YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              Y K   +  A  +FD M  +  V W  II+ + + G   E   L+  M  + ++PD+
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA------ 365
            T  SIL AC   G LG GM++H+SI K     N++V  +L+DMY+KCG ++ A      
Sbjct: 442 FTFGSILKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500

Query: 366 ----------MSVFNGMTKKDL----VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
                     M     M  K L    VSWN+++ G  M  Q E A  LF+RM + G  PD
Sbjct: 501 FFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 560

Query: 412 KYTFVGVLCACT-----------HAGFIDKGVQ-------------------------YF 435
           K+T+  VL  C            HA  I K +Q                         + 
Sbjct: 561 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFE 620

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGACRK 492
            S+ RD+        +  MI      G+ +EA++L + M +E   PN + + ++L AC  
Sbjct: 621 KSLRRDFVT------WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAH 674

Query: 493 HNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATG 528
              ++   E    + R  G DP   +Y+ + +I   +G
Sbjct: 675 MGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 712



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 192/446 (43%), Gaps = 50/446 (11%)

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC-GVVGVSLAKKLFMSMGERDI 183
           C  +    L +  HA +   G+    FV N L+  Y+     V  S+   +F  M  RD+
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASM---VFDKMPLRDV 72

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           VSWN MI G  K  ++ +A   F+ MP RD VSWN++L GY + GE   + E+F  +   
Sbjct: 73  VSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGRE 132

Query: 244 ---------------------------------------NIVSWSTMVWGYSKDGDMEMA 264
                                                  ++V+ S ++  Y+K      +
Sbjct: 133 GIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVES 192

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F  +P K  V W+ II+G  +  +   A + + +M++           S+L +CA  
Sbjct: 193 LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAAL 252

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L LG ++HA   K  F  +  V  A +DMYAKC ++ +A  +F+     +  S+NAM+
Sbjct: 253 SELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMI 312

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G +    G KAL LF R+   G G D+ +  GV  AC     + +G+Q  Y +     +
Sbjct: 313 TGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQ-IYGLAIKSSL 371

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
              V      ID+ G+   L EA R+   M    +A+ W  ++ A   H       E L 
Sbjct: 372 SLDVCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA---HEQNGKGYETLF 427

Query: 505 CLIRLKGS--DPGNYTMLSNIFAATG 528
             + +  S  +P  +T  S + A TG
Sbjct: 428 LFVSMLRSRIEPDEFTFGSILKACTG 453


>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
          Length = 523

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 181/499 (36%), Positives = 285/499 (57%), Gaps = 39/499 (7%)

Query: 57  SSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM----QEKGVF 112
           S++A+   +  A  VF+ I  PD  +YNTLIR     +    A  ++  M       GV 
Sbjct: 20  SAVAVRGAIAHAYLVFDQIPRPDRFMYNTLIRGAAHTAAPRDAVSLYTRMLRRGGGGGVR 79

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            D  T+PF+L+AC           +HA + K G   D FV N+LI  ++ CG +G++ A 
Sbjct: 80  PDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAA- 138

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
                                           LFD     DAV+W+ ++ G A+ G++  
Sbjct: 139 --------------------------------LFDGRAREDAVAWSAMITGCARRGDIGA 166

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LF++ P +++VSW+ M+  Y+K GDM +A+ LFD++P + +V W ++ISGY   G  
Sbjct: 167 ARDLFDECPVKDLVSWNVMITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSH 226

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC--N 350
             A  L++QM+  G KPD  T++S+L+ACA+SG L +G ++H+S++    +    V   N
Sbjct: 227 LHALELFEQMQRMGEKPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGN 286

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           AL+DMYAKCGS+ +A  VF  M  KD+ +WN+++ GLA+HG   +++ +F +M      P
Sbjct: 287 ALIDMYAKCGSMKSAHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRP 346

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D+ TFV VL AC+H G +DKG ++F  M+  Y + P ++HYGC++D+LGR+G LKEA   
Sbjct: 347 DEITFVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEF 406

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           + +M  EPN++IW TLL ACR H  +ELA+     L++ +  + G+Y +LSNI+A+ G+W
Sbjct: 407 IDTMKCEPNSVIWRTLLSACRVHGEIELAKHANRQLLKARNDESGDYVLLSNIYASVGEW 466

Query: 531 NKVANVRLQMKKTRAQKPS 549
                +R  M  +   K +
Sbjct: 467 FGSEKMRKLMDDSGVNKEA 485



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 170/374 (45%), Gaps = 53/374 (14%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+ A ++K   + D ++   LI   A C  +G+A  +F+     D   ++ +I  C +  
Sbjct: 103 QVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALFDGRAREDAVAWSAMITGCARRG 162

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
                        + G   D      L   C  K                    D+   N
Sbjct: 163 -------------DIGAARD------LFDECPVK--------------------DLVSWN 183

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----P 210
            +I +Y+K G   ++LA++LF  + ERD+VSWN MI+G V+ G    A  LF++M     
Sbjct: 184 VMITAYAKRG--DMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGE 241

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIP---HRN---IVSWSTMVWGYSKDGDMEMA 264
           + D V+  ++L   A +G++++   L   +     RN   +V  + ++  Y+K G M+ A
Sbjct: 242 KPDIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSA 301

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F  M  K +  W  I+ G A  G   E+  ++++M +  ++PD+ T +++L AC+  
Sbjct: 302 HEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHG 361

Query: 325 GLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
           G++  G +    + +KYR + N      +VDM  + G L  A    + M  + + V W  
Sbjct: 362 GMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWRT 421

Query: 383 MLYGLAMHGQGEKA 396
           +L    +HG+ E A
Sbjct: 422 LLSACRVHGEIELA 435



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 21/260 (8%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I++ A    M LA ++F+ + + DV  +N +I   V+   +  A  +F  MQ  G   D
Sbjct: 185 MITAYAKRGDMALARELFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMGEKPD 244

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHA----LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
             T   LL AC       + Q +H+    +  + G+   + + N+LID Y+KCG   +  
Sbjct: 245 IVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGF--PVVLGNALIDMYAKCG--SMKS 300

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAK 226
           A ++F SM ++D+ +WNS++ GL   G + E+  +F++M       D +++  +L   + 
Sbjct: 301 AHEVFWSMRDKDVSTWNSIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSH 360

Query: 227 AGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWT 280
            G ++   E F  + H+     NI  +  +V    + G ++ A    D M  +   V W 
Sbjct: 361 GGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCEPNSVIWR 420

Query: 281 IIISG---YAEKGMAKEAAR 297
            ++S    + E  +AK A R
Sbjct: 421 TLLSACRVHGEIELAKHANR 440


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 201/595 (33%), Positives = 312/595 (52%), Gaps = 38/595 (6%)

Query: 4   PIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           P+R     +   LLE  +Q+    K+L + K++    +K     D  +  KL      C 
Sbjct: 2   PLRFEVKNNYLHLLEACIQS----KSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN 57

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           Q+ LA ++F++I +P V L+N +IRA   N     A  ++  M   GV  + +TYPF+LK
Sbjct: 58  QVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC+G         IH+     G   D+FV  +L+D Y+KCG+                  
Sbjct: 118 ACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI------------------ 159

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
                          L EA+RLF  M  RD V+WN ++ G +  G  + A +L  ++   
Sbjct: 160 ---------------LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEE 204

Query: 244 NIVSWSTMVWGYSKDGD-MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
            I   S+ + G       +  A+ +FD M  +  V W+ +I GY      KEA  ++  M
Sbjct: 205 GICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMM 264

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           + +G+ PD  T++ +L AC+    L  G   H  +    F  +T +CNAL+DMY+KCG +
Sbjct: 265 QLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKI 324

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
             A  VFN M + D+VSWNAM+ G  +HG G +ALGLF  +   G  PD  TF+ +L +C
Sbjct: 325 SFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSC 384

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H+G + +G  +F +M RD+ I+P++EH  CM+D+LGR+G + EA   +++MP EP+  I
Sbjct: 385 SHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRI 444

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           W  LL ACR H  +EL EEV   +  L     GN+ +LSNI++A G W+  A++R+  K 
Sbjct: 445 WSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKD 504

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
              +K  G S +E++  VH F   DQ H +  QI + +  L  ++K +G+ A+ S
Sbjct: 505 WGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECS 559


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 186/536 (34%), Positives = 305/536 (56%), Gaps = 12/536 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF+ + + ++  +  +I    Q      A  +FLDM+  G   D FTY  +L AC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSW 186
                L + +H+ + + G   D+ V  SL+D Y+KC   G V  ++K+F  M E +++SW
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 187 NSMIAGLVKGGELS-EARRLFDEMP----ERDAVSWNTILDGYAK-----AGEMNLAFEL 236
            ++I    + GE   EA  LF +M       +  S++++L           GE   ++ +
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
              I   N V  ++++  Y++ G ME A+  FD +  K LV +  I+ GYA+   ++EA 
Sbjct: 184 KLGIASVNCVG-NSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
            L++++ + G+     T  S+L+  A  G +G G ++H  + K  +K N  +CNAL+ MY
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           ++CG+++ A  VFN M  ++++SW +M+ G A HG   +AL +F +M + G  P++ T+V
Sbjct: 303 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 362

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            VL AC+H G I +G ++F SM +++GI+P++EHY CM+DLLGRSG L EA+  + SMP+
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 422

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
             +A++W TLLGACR H   EL     + ++  +  DP  Y +LSN+ A+ G W  V  +
Sbjct: 423 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 482

Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           R  MK+    K +G S +EV+N VH F V +  HP++ QIYQ ++ L   +K +G+
Sbjct: 483 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 538



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 186/375 (49%), Gaps = 16/375 (4%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL---AIKVFNDIQDPDVHLYNTLIRAC 90
           KQL +++I+L L  D  +   L+   A C   G    + KVF  + + +V  +  +I A 
Sbjct: 71  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 130

Query: 91  VQN-SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            Q+   + +A  +F  M    +  ++F++  +LKAC   +  +  + +++   K G    
Sbjct: 131 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 190

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V NSLI  Y++ G   +  A+K F  + E+++VS+N+++ G  K  +  EA  LF+E+
Sbjct: 191 NCVGNSLISMYARSG--RMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEI 248

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDGDM 261
            +      A ++ ++L G A  G M    ++  ++       N    + ++  YS+ G++
Sbjct: 249 ADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNI 308

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A  +F+ M  + ++ WT +I+G+A+ G A  A  ++ +M E G KP++ T +++L+AC
Sbjct: 309 EAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSAC 368

Query: 322 AESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVS 379
           +  G++  G K   S+ K +           +VD+  + G L  AM   N M    D + 
Sbjct: 369 SHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALV 428

Query: 380 WNAMLYGLAMHGQGE 394
           W  +L    +HG  E
Sbjct: 429 WRTLLGACRVHGNTE 443



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 140/306 (45%), Gaps = 27/306 (8%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C NL+     +Q+++  +KL +     +   LIS  A   +M  A K F+ + + ++
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 222

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YN ++    +N  + +AF +F ++ + G+    FT+  LL            + IH  
Sbjct: 223 VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 282

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K GY  +  + N+LI  YS+CG   +  A ++F  M +R+++SW SMI G  K G  +
Sbjct: 283 LLKGGYKSNQCICNALISMYSRCG--NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFAT 340

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-----SWSTM 251
            A  +F +M E     + +++  +L   +  G ++   + F  +   + +      ++ M
Sbjct: 341 RALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACM 400

Query: 252 VWGYSKDGDMEMAKLLFDRMP--AKTLVPWTII----ISGYAEKGMAKEAARLYDQMEEA 305
           V    + G +  A    + MP  A  LV  T++    + G  E G  + AA +  + E  
Sbjct: 401 VDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELG--RHAAEMILEQE-- 456

Query: 306 GLKPDD 311
              PDD
Sbjct: 457 ---PDD 459



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 105/236 (44%), Gaps = 21/236 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +Q+  +++K   + +  I   LIS  + C  +  A +VFN+++D +V  + ++I  
Sbjct: 273 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 332

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
             ++    +A  +F  M E G   +  TY  +L AC+       G+  F+ +   H ++ 
Sbjct: 333 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 392

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSE 201
           +  ++        ++D   + G+  +  A +   SM    D + W +++      G    
Sbjct: 393 RMEHYA------CMVDLLGRSGL--LVEAMEFINSMPLMADALVWRTLLGACRVHGNTEL 444

Query: 202 ARR----LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
            R     + ++ P+ D  ++  + + +A AG+     ++ + +  RN++  +   W
Sbjct: 445 GRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW 499


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  350 bits (899), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 326/620 (52%), Gaps = 64/620 (10%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+    +K+    D      L+   A C+++  +I+ F+ + + +   ++ +I  CVQN 
Sbjct: 195 QIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQND 254

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
                  +F +MQ+ GV     T+  + ++C G +   L   +H    K  +  D+ +  
Sbjct: 255 DLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGT 314

Query: 155 SLIDSYSKCG-----------------------VVGVSLAKK------------------ 173
           + +D Y KC                        +VG + + K                  
Sbjct: 315 ATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSGAFRACAV 374

Query: 174 ------------LFM-SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
                       L M S+ + +I   N+++    K G L EA  +F+EM  RDAVSWN I
Sbjct: 375 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 434

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSW--------STMVWGYSKDGDMEMAKLLFDRMP 272
           +  + + G       LF  I +R I S           ++  YSK G ME A+ L DR+ 
Sbjct: 435 IAAHEQNGNEEKTLSLF--IHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLA 492

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            +T+V W  IISG++ +  ++EA + + +M E G+ PD+ T  +IL  CA    + LG +
Sbjct: 493 EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQ 552

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +HA I K   + +  + + LVDMY+KCG++ +   +F     +D V+WNAM+ G A HG 
Sbjct: 553 IHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGL 612

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           GE+AL +F  M+ E   P+  TF+ VL AC H G ++KG+ YF+SM  +YG+ PQ+EHY 
Sbjct: 613 GEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS 672

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           C++D++GRSG++ +AL L++ MP E +A+IW TLL  C+ H  VE+AE+    +++L+  
Sbjct: 673 CVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPE 732

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           D   Y +LSNI+A  G WN+V  +R  M+    +K  G S +E+ +EVH F V D+ HP+
Sbjct: 733 DSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFLVGDKAHPR 792

Query: 573 SEQIYQMINTLGKDLKPVGH 592
           S++IY+ ++ L  ++K VG+
Sbjct: 793 SKEIYENLDVLTDEMKWVGY 812



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 140/584 (23%), Positives = 260/584 (44%), Gaps = 91/584 (15%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           PT F    L++  +    KC +L    ++F  +     QRD      ++   A    +G+
Sbjct: 75  PTVFVTNCLIQMYI----KCSDLEFAFKVFDGMP----QRDTVSWNAMLFGYAGRGDIGV 126

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F+ + + DV  +N+LI   + N  + +   VFL M   G   D  T+  +LK+C+ 
Sbjct: 127 AQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSS 186

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                    IH L  K G+  D+   ++L+D Y+KC  +  S+  + F SM E++ VSW+
Sbjct: 187 LEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSI--QFFHSMPEKNWVSWS 244

Query: 188 SMIAGLVKGGELSEARRLFDEMPE------------------------------------ 211
           ++IAG V+  +L     LF EM +                                    
Sbjct: 245 AIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKT 304

Query: 212 ---RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD---------- 258
               D V     LD Y K   ++ A +LF  +P+ N+ S++ ++ GY++           
Sbjct: 305 DFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVS 364

Query: 259 ------------GDMEMAKLLFDRMPAKTLVPWTI-----IISGYAEKGMAKEAARLYDQ 301
                       GD+E   L    +  K+L    I     I+  Y + G   EA  ++++
Sbjct: 365 LSGAFRACAVIKGDLE--GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE 422

Query: 302 MEEAGLKPDDGTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           M    +  D  +  +I+AA  ++G     L + +H  I K R   ++ V  AL+DMY+KC
Sbjct: 423 M----VSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKC 478

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G ++ A  + + + ++ +VSWNA++ G ++  Q E+A   FS+M + G  PD +T+  +L
Sbjct: 479 GMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 538

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHY--GCMIDLLGRSGRLKEALRLVQSMPVE 477
             C +   ++ G Q    + +      Q + Y    ++D+  + G +++   + +  P  
Sbjct: 539 DTCANLVTVELGKQIHAQIIKKE---LQSDAYISSTLVDMYSKCGNMQDFQLIFEKAP-N 594

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            + + W  ++    +H   E A ++ +  ++L+   P + T L+
Sbjct: 595 RDFVTWNAMVCGYAQHGLGEEALKIFE-YMQLENVKPNHATFLA 637



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/443 (25%), Positives = 189/443 (42%), Gaps = 72/443 (16%)

Query: 101 RVFLDMQEKGVF---------------TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           R F + Q K  F               T   T+  + + C+ +      +  HA +    
Sbjct: 13  RFFFNFQSKSPFKTLPISPFSSYQATPTKKKTFSHIFQECSDRKALCPGKQAHARMILTE 72

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +   +FV N LI  Y KC    +  A K+F  M +RD VSWN+M+ G    G++  A++L
Sbjct: 73  FKPTVFVTNCLIQMYIKCS--DLEFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKL 130

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR---------------------- 243
           FD MPERD VSWN+++ GY   G+     ++F ++                         
Sbjct: 131 FDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDH 190

Query: 244 -----------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
                            ++V+ S ++  Y+K   ++ +   F  MP K  V W+ II+G 
Sbjct: 191 GGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGC 250

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
            +    +    L+ +M++AG+     T  S+  +CA    L LG ++H    K  F  + 
Sbjct: 251 VQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDV 310

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
            +  A +DMY KC +L +A  +FN +   +L S+NA++ G A                D+
Sbjct: 311 VIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYA--------------RSDK 356

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G G D+ +  G   AC       +G+Q  + +         +     ++D+ G+ G L E
Sbjct: 357 GLGLDEVSLSGAFRACAVIKGDLEGLQ-VHGLSMKSLCQSNICVANAILDMYGKCGALVE 415

Query: 467 ALRLVQSMPVEPNAIIWGTLLGA 489
           A  + + M V  +A+ W  ++ A
Sbjct: 416 ACLVFEEM-VSRDAVSWNAIIAA 437



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 48/330 (14%)

Query: 29  NLNQTKQLFA--QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           N  +T  LF   +IIK  L  D ++   LI   + C  M  A K+ + + +  V  +N +
Sbjct: 443 NEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAI 502

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I        + +A + F  M E GV  DNFTY  +L  C       L + IHA I K   
Sbjct: 503 ISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKEL 562

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D ++ ++L+D YSKCG   +   + +F     RD V+WN+M+ G  + G   EA ++F
Sbjct: 563 QSDAYISSTLVDMYSKCG--NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIF 620

Query: 207 DEMP------------------------ERDAVSWNTILDGY----------------AK 226
           + M                         E+    ++++L  Y                 +
Sbjct: 621 EYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGR 680

Query: 227 AGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAK---LLFDRMPAKTLVPWTII 282
           +G+++ A EL E +P   + V W T++      G++E+A+       ++  +    + ++
Sbjct: 681 SGQVSKALELIEGMPFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLL 740

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + YA  GM  E  +L   M   GLK + G
Sbjct: 741 SNIYANAGMWNEVTKLRKMMRFNGLKKEPG 770


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/558 (33%), Positives = 302/558 (54%), Gaps = 42/558 (7%)

Query: 54  KLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG--V 111
           KLI + A C  +  A  V +   D     +N L+R     SL+  A  +F  M+ +G   
Sbjct: 59  KLIQAYAACAALPAARAVLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHAC 118

Query: 112 FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171
           F D++TYP  LK+C   +   L + IH+   + G  G++FV +S I  Y++CG       
Sbjct: 119 FPDHYTYPLALKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCG------- 171

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
                                        +A ++F+EM  RD VSWN ++ G+A AG   
Sbjct: 172 --------------------------RPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFG 205

Query: 232 LAFELFEKI-----PHRNIVSWSTMV--WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
            A ++F ++     P  +  + ++++   G ++  D+ + K +FD M  K L+ W  +++
Sbjct: 206 RAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLA 265

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
            Y    M  EA  L+ +M++ G++PD  TL ++L +C E   L LG ++H  I + R   
Sbjct: 266 VYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCS 325

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  + NAL+DMYA CG L  A  VF+ M  +D+VSW +++     HG G +A+ LF +M 
Sbjct: 326 SMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMC 385

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            +G  PD   FV +L AC+HAG +D G  YFYSM  ++ I P++EHY CM+DLLGR+G +
Sbjct: 386 GQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCI 445

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
           +EA   +  MP++PN  +WG LLGACR H+ +++     D L+RL     G Y +LSNI+
Sbjct: 446 REAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIY 505

Query: 525 AATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584
           A  G W  V+ VR  M+    +K  G S+ E+ + VH F + D  HP+S+ IY+ ++ L 
Sbjct: 506 ARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELL 565

Query: 585 KDLKPVGHAAKLSAEIGE 602
           + ++ +G+  ++ A + +
Sbjct: 566 RRIREMGYNPEVEATLHD 583


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 208/647 (32%), Positives = 328/647 (50%), Gaps = 84/647 (12%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L   KQ+   ++    + D ++A  L+   A C +   + ++F++I + +V  +N L 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              VQ     +A  +F +M   G+  + F+   ++ AC G       ++IH  + K GY 
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYD 290

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV------------- 194
            D F  N+L+D Y+K G +  +++  +F  + + DIVSWN++IAG V             
Sbjct: 291 WDPFSANALVDMYAKVGDLADAIS--VFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 195 ------------------------------KGGELSEARRLFDEMPERDAVSWNTILDGY 224
                                         K   L +AR  F+ +PE+D ++WN I+ GY
Sbjct: 349 QMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY 408

Query: 225 AKAGEMNLAFELFEKIP---------------------------------------HRNI 245
           ++  E   A  LF ++                                        H +I
Sbjct: 409 SQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDI 468

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              ++++  Y K   +E A+ +F+      LV +T +I+ YA+ G  +EA +L+ +M++ 
Sbjct: 469 YVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDM 528

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            LKPD     S+L ACA       G ++H  I KY F  +    N+LV+MYAKCGS+D+A
Sbjct: 529 ELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDA 588

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
              F+ +T++ +VSW+AM+ GLA HG G +AL LF++M  EG  P+  T V VL AC HA
Sbjct: 589 GRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHA 648

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G + +   YF SME  +G  P  EHY CMIDLLGR+G++ EA+ LV  MP E NA +WG 
Sbjct: 649 GLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGA 708

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGA R H  VEL     + L  L+    G + +L+NI+A+ G W  VA VR  M+ ++ 
Sbjct: 709 LLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKV 768

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +K  G S +EV ++V+ F V D+ H +S++IY  ++ L   +   G+
Sbjct: 769 KKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGY 815



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 163/597 (27%), Positives = 272/597 (45%), Gaps = 91/597 (15%)

Query: 7   APTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66
            PT  S  +LL +        K+L    Q+ A I K  L  DP I   LI+  + CR  G
Sbjct: 53  TPTSVSYSKLLSQCCTT----KSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFG 108

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
            A K+ ++  +PD+  ++ LI    QN L   A   F +M   GV  + FT+  +LKAC+
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                 + + +H ++   G+ GD+FV N+L+  Y+KC     S  K+LF  + ER++VSW
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDS--KRLFDEIPERNVVSW 226

Query: 187 NSMIAGLVKGGELSEARRLFDEM------PER---------------------------- 212
           N++ +  V+     EA  LF EM      P                              
Sbjct: 227 NALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIK 286

Query: 213 -----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG------------- 254
                D  S N ++D YAK G++  A  +FEKI   +IVSW+ ++ G             
Sbjct: 287 LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALEL 346

Query: 255 ------------------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
                                         YSK   +E A++ F+ +P K L+ W  IIS
Sbjct: 347 LGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIIS 406

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GY++     EA  L+ +M + G+  +  TL +IL + A   ++ +  +VH    K  F  
Sbjct: 407 GYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHS 466

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  V N+L+D Y KC  +++A  +F   T  DLVS+ +M+   A +GQGE+AL LF  M+
Sbjct: 467 DIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQ 526

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
           D    PD++    +L AC +    ++G Q    + + YG +  +     ++++  + G +
Sbjct: 527 DMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSI 585

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            +A R    +  E   + W  ++G   +H     A ++ + +++ +G  P + T++S
Sbjct: 586 DDAGRAFSEL-TERGIVSWSAMIGGLAQHGHGRQALQLFNQMLK-EGVSPNHITLVS 640



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 168/330 (50%), Gaps = 12/330 (3%)

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           LI+   Q S + Q   + L++ +KG FT  + +Y  LL  C           IHA I K 
Sbjct: 27  LIQTVPQFSEDPQTTAI-LNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKS 85

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   D  + N LI+ YSKC   G   A+KL     E D+VSW+++I+G  + G    A  
Sbjct: 86  GLSDDPSIRNHLINLYSKCRXFG--YARKLVDESSEPDLVSWSALISGYAQNGLGGGALM 143

Query: 205 LFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYS 256
            F EM     + +  +++++L   +   ++ +  ++   +       ++   +T+V  Y+
Sbjct: 144 AFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYA 203

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K  +   +K LFD +P + +V W  + S Y +     EA  L+ +M  +G+KP++ +L S
Sbjct: 204 KCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSS 263

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++ AC        G  +H  + K  +  +    NALVDMYAK G L +A+SVF  + + D
Sbjct: 264 MVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPD 323

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           +VSWNA++ G  +H   E+AL L  +MK +
Sbjct: 324 IVSWNAVIAGCVLHEHHEQALELLGQMKRQ 353



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 11/239 (4%)

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           +   + + +++    P   +   +L+ C  +  L  G+++HA I K     + ++ N L+
Sbjct: 39  QTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLI 98

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           ++Y+KC     A  + +  ++ DLVSW+A++ G A +G G  AL  F  M   G   +++
Sbjct: 99  NLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEF 158

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           TF  VL AC+    +  G Q  + +    G    V     ++ +  +     ++ RL   
Sbjct: 159 TFSSVLKACSIVKDLRIGKQ-VHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 474 MPVEPNAIIWGTLLGACRKHN----AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +P E N + W  L     + +    AV L  E++     L G  P  +++ S + A TG
Sbjct: 218 IP-ERNVVSWNALFSCYVQXDFCGEAVGLFYEMV-----LSGIKPNEFSLSSMVNACTG 270


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/549 (36%), Positives = 310/549 (56%), Gaps = 39/549 (7%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQ--EKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           +V ++NT+IR  V+N L  +   +   MQ    G+  +  T+ +LLKA          + 
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVG--------------------------VSL 170
           +HA + + G+    FV  +L+  Y  CG+VG                          V+ 
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 171 AKK---LFMSMGE----RDIVSWNSMIA--GLVKGGELSEARRLFDEMP--ERDAVSWNT 219
            +K   LF +M E     D+V+ +++++  GL+    +++A   F E    E DA   +T
Sbjct: 173 PEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++  Y + G ++ A+  F++ P +NIV W+TM+    +  ++E+ K LF  MP + +V W
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G  +EA   + +ME +G+ P+  TL+S L+ACA  G L  G  +HA ++K
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDK 352

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                + ++ ++L+DMY+KCG +D A+ +F   T++DL +W +++ GLAMHG+GEKAL  
Sbjct: 353 NDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           FS+MK+    PD  T VGVL AC HAG +D+G  YF SME+ +G++P+VEHYGCM+DLLG
Sbjct: 413 FSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLG 472

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R G LKEA  L+  MP+E N IIWG  L ACR HN VEL E     L+ L   DP    M
Sbjct: 473 RMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLDPRDPWARVM 532

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSN++A    W++   +R ++KK   +K  G SS+EV+  VH F V D  HP   +I  M
Sbjct: 533 LSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINSM 592

Query: 580 INTLGKDLK 588
           +  + K ++
Sbjct: 593 VEKIEKLMR 601



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/415 (25%), Positives = 192/415 (46%), Gaps = 43/415 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ L   + + + +++ A +++       +++  L+     C  +G   +VF++++ P +
Sbjct: 98  LKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGL 157

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            L+  +IRA V  +   +A  +F  M+E G+  D      ++ AC       + + +H  
Sbjct: 158 VLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCF 217

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G   D FV ++LI +Y +CG   +  A + F     ++IV WN+MI   V+   L 
Sbjct: 218 IEKSGIEVDAFVSSTLISTYGECG--SLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLE 275

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-------------- 246
             ++LF  MP+RD VSWN+++ G+A+ G+   A   F ++    +               
Sbjct: 276 LGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACA 335

Query: 247 --------SW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                   +W                 S+++  YSK GD++ A  +F+    + L  WT 
Sbjct: 336 SHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTS 395

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-Y 340
           I+ G A  G  ++A   + +M+EA ++PDD T++ +L+ACA +GLL  G     S+ K +
Sbjct: 396 IVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVF 455

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
                      +VD+  + G L  A  +  GM  + + + W A L    +H   E
Sbjct: 456 GLVPKVEHYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVE 510



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 24/231 (10%)

Query: 21  LQNLHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L  L  C +   L+    + A + K D+ RD  +   LI   + C  +  A+++F +   
Sbjct: 328 LSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTR 387

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNW 130
            D+  + +++     +    +A   F  M+E  V  D+ T   +L AC        G  +
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           F  ++ +  L+ K  ++G       ++D   + G +  +    + M M   +I+ W + +
Sbjct: 448 FQSMEKVFGLVPKVEHYG------CMVDLLGRMGCLKEAYDLIMGMPMEANEII-WGAFL 500

Query: 191 AGL-----VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
           +       V+ GE++ ARRL    P RD  +   + + YA+  + + +  L
Sbjct: 501 SACRVHNNVELGEVA-ARRLLGLDP-RDPWARVMLSNMYAEEAKWDRSMGL 549


>gi|224092607|ref|XP_002309680.1| predicted protein [Populus trichocarpa]
 gi|222855656|gb|EEE93203.1| predicted protein [Populus trichocarpa]
          Length = 500

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 177/491 (36%), Positives = 284/491 (57%), Gaps = 5/491 (1%)

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           +  P++  +N +I+  V N    QA   ++++QE G   DNFT+P LLKA    +   + 
Sbjct: 10  LPSPEMRQWNEIIKKHVLNGDAVQAMVTYVNVQEIGFHADNFTFPILLKAAGSWSSPCIG 69

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             +H    K G+   +FV  +L++ Y     V  + A K+F  M  +D+V+WNS++    
Sbjct: 70  LALHGQTIKAGFSSHVFVQTALLNMYRSHSCV--ADACKVFEKMPVKDVVAWNSILDAYA 127

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
              ++ +A ++F+ MP +D  S+N ++ GY+  G+   A  +F+ +  ++IVSW++M+  
Sbjct: 128 STDQMDDALKVFNSMPLKDLSSFNIMISGYSSIGKTLSARSIFDNMAEKDIVSWNSMISA 187

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y +  DME A  LF  MPAK ++ W  ++ G+ +  +  E   L+D+M+     PD  T+
Sbjct: 188 YIQGEDMERACDLFREMPAKNIITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTV 247

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
             +L+ACA SG L  G +VH          + +V  AL+DMYAKCGS+   + VF     
Sbjct: 248 TGVLSACAHSGSLKKGTEVHIYAIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQV 307

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD+  WNA++ GLA+HG G  AL +F++M+     PD  TF+G+L AC+H+G + +G Q 
Sbjct: 308 KDIYCWNALISGLALHGHGYAALNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQL 367

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           FYSM++++GI P++EHYGCM+DLL R+  L  AL+L+++MP +P   I G LL AC  H 
Sbjct: 368 FYSMQKEFGISPKIEHYGCMVDLLSRARHLDCALQLIKTMPFKPGEAILGALLSACIVHQ 427

Query: 495 AVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
            +E+ E V+  L+  +G+    G   M SN++A+ G W +    R  M  T   K +G S
Sbjct: 428 DLEVGERVVK-LVSSRGNYLSDGELMMFSNLYASCGQWEEANKWREMMNDTGIVKTAGFS 486

Query: 553 SVEVDNEVHEF 563
            VEV+ + H+F
Sbjct: 487 VVEVNGKFHKF 497



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 152/381 (39%), Gaps = 83/381 (21%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           L  Q IK       ++   L++       +  A KVF  +   DV  +N+++ A      
Sbjct: 72  LHGQTIKAGFSSHVFVQTALLNMYRSHSCVADACKVFEKMPVKDVVAWNSILDAYASTDQ 131

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
              A +VF  M  K                                       D+   N 
Sbjct: 132 MDDALKVFNSMPLK---------------------------------------DLSSFNI 152

Query: 156 LIDSYSKCGVVGVSL-AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           +I  YS    +G +L A+ +F +M E+DIVSWNSMI+  ++G ++  A  LF EMP ++ 
Sbjct: 153 MISGYSS---IGKTLSARSIFDNMAEKDIVSWNSMISAYIQGEDMERACDLFREMPAKNI 209

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-------------------- 254
           ++WNT++ G+ +        +LF+++   N +     V G                    
Sbjct: 210 ITWNTMVKGFLQNQLYAEVLDLFDEMKTTNCLPDYLTVTGVLSACAHSGSLKKGTEVHIY 269

Query: 255 -------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                              Y+K G ++    +F +   K +  W  +ISG A  G    A
Sbjct: 270 AIDNGLASSPHVTTALIDMYAKCGSIQQGLQVFYKSQVKDIYCWNALISGLALHGHGYAA 329

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVD 354
             ++++M +   +PDD T I +L+AC+ SGL+  G ++  S+ K +           +VD
Sbjct: 330 LNIFNKMRKNHTRPDDITFIGLLSACSHSGLVQEGSQLFYSMQKEFGISPKIEHYGCMVD 389

Query: 355 MYAKCGSLDNAMSVFNGMTKK 375
           + ++   LD A+ +   M  K
Sbjct: 390 LLSRARHLDCALQLIKTMPFK 410


>gi|297607983|ref|NP_001061009.2| Os08g0153600 [Oryza sativa Japonica Group]
 gi|255678154|dbj|BAF22923.2| Os08g0153600 [Oryza sativa Japonica Group]
          Length = 551

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/428 (41%), Positives = 256/428 (59%), Gaps = 2/428 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A++LF SM  RD+VSWN+M++GL K G + EA+ +F  MP R++VSWN ++ G+A + +M
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 158

Query: 231 NLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           + A E F   P + + V W+ MV GY   G++  A   F+ MP + LV W  +++GY + 
Sbjct: 159 SAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKN 218

Query: 290 GMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
             A +A RL+  M  EA ++P+  TL S+L  C+    LG G ++H    K     N  V
Sbjct: 219 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTV 278

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             +LV MY KCG L +A  +F  M  +D+V+WNAM+ G A HG G++A+ LF RMKDEG 
Sbjct: 279 GTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            P+  TFV VL AC H G  D G++ F  M+  YGI P+V+HY CM+DLL R+G+L+ A+
Sbjct: 339 EPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            L++SMP EP+   +GTLL ACR +  +E AE     LI       G Y  L+NI+A   
Sbjct: 399 DLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGAN 458

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W+ V+ VR  MK     K  G S +E+   +HEF   D+LHP+   I++ +  L + +K
Sbjct: 459 QWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMK 518

Query: 589 PVGHAAKL 596
            +G+   L
Sbjct: 519 AMGYVPDL 526



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 169/407 (41%), Gaps = 75/407 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKG-GELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           A++ F S   +   ++N ++AG  +  G L++AR LFD +P  DAVS+NT+L  +  +G+
Sbjct: 36  AEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGD 95

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A  LF  +P R++VSW+TMV G SK G +E AK +F  MP +  V W  ++SG+A  
Sbjct: 96  ADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACS 155

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
                A   +    E G    D  L +                                 
Sbjct: 156 RDMSAAEEWFRNAPEKG----DAVLWT--------------------------------- 178

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGF 408
            A+V  Y   G++  A+  F  M  ++LVSWNA++ G   +   + AL LF  M ++   
Sbjct: 179 -AMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQY------------------FYSMERDYGILPQ--- 447
            P+  T   VL  C++   +  G Q                     SM    G L     
Sbjct: 238 QPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACK 297

Query: 448 ---------VEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNA 495
                    V  +  MI    + G  KEA+ L + M    VEPN I +  +L AC     
Sbjct: 298 LFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGL 357

Query: 496 VELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVANVRLQM 540
            +      + +  L G +P   +Y+ + ++    G   +  ++   M
Sbjct: 358 CDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 12/215 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           AI+ F  +   ++  +N ++   V+NS    A R+F  M +E  V  +  T   +L  C+
Sbjct: 193 AIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +     + IH    K     ++ V  SL+  Y KCG   +S A KLF  M  RD+V+W
Sbjct: 253 NLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG--DLSSACKLFGEMHTRDVVAW 310

Query: 187 NSMIAGLVKGGELSEARRLF----DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241
           N+MI+G  + G+  EA  LF    DE  E + +++  +L      G  +     FE +  
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 370

Query: 242 ----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                  +  +S MV    + G +E A  L   MP
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     KQ+    +KL L R+  +   L+S    C  +  A K+F ++   DV  +
Sbjct: 251 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 310

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I    Q+    +A  +F  M+++GV  +  T+  +L AC
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 352


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 191/520 (36%), Positives = 298/520 (57%), Gaps = 12/520 (2%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDM--QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           YN L+RA +       A  +F++M         D  T    LK+C+      + + + A 
Sbjct: 86  YNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAY 145

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K G   D FV +SLI  Y+ CG   V+ A+ +F +  E  +V WN+++A  +K G+  
Sbjct: 146 AVKRGLVADRFVLSSLIHMYASCG--DVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWM 203

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNL----AFELFEKIPHRNIVSWSTMV 252
           E   +F  M E     D V+  +++    + G+  L    A  + E+   RN    + ++
Sbjct: 204 EVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALM 263

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G++  A+ LFD M ++ +V W+ +ISGY +    +EA  L+ +M+ A ++P+D 
Sbjct: 264 DMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDV 323

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T++S+L+ACA  G L  G  VH+ + + R    T +  ALVD YAKCG +D+A+  F  M
Sbjct: 324 TMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESM 383

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K+  +W A++ G+A +G+G +AL LFS M++ G  P   TF+GVL AC+H+  +++G 
Sbjct: 384 PVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGR 443

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           ++F SM RDYGI P+VEHYGCM+DLLGR+G + EA + +++MP+EPNA+IW  LL +C  
Sbjct: 444 RHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAV 503

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  V + EE L  +I L  S  G+Y +LSNI+A+ G W   A VR +MK    +K  G S
Sbjct: 504 HRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCS 563

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +E+D  V EF   D  HP+  +IYQ +  +   +K  G+
Sbjct: 564 LIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGY 603



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 187/390 (47%), Gaps = 15/390 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++  +   L+  + + A  +K  L  D ++   LI   A C  +  A  VF+  ++  V
Sbjct: 127 LKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGV 186

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            ++N ++ A ++N    +   +F  M E GV  D  T   ++ AC       L + +   
Sbjct: 187 VMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGH 246

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G   +  +  +L+D Y+KCG +G   A++LF  M  RD+V+W++MI+G  +  +  
Sbjct: 247 VDEEGLARNPKLVTALMDMYAKCGEIGK--ARRLFDGMQSRDVVAWSAMISGYTQADQCR 304

Query: 201 EARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMV 252
           EA  LF EM     E + V+  ++L   A  G +     +   +  + +    +  + +V
Sbjct: 305 EALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALV 364

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G ++ A   F+ MP K    WT +I G A  G  +EA  L+  M EAG++P D 
Sbjct: 365 DFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDV 424

Query: 313 TLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T I +L AC+ S L+  G +   S+ + Y  K        +VD+  + G +D A      
Sbjct: 425 TFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRT 484

Query: 372 M-TKKDLVSWNAMLYGLAMH---GQGEKAL 397
           M  + + V W A+L   A+H   G GE+AL
Sbjct: 485 MPIEPNAVIWRALLSSCAVHRNVGIGEEAL 514


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/515 (36%), Positives = 279/515 (54%), Gaps = 43/515 (8%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y  LLK C  +      + +HA I   G  G +++ N L+D Y+KCG   +  A+K+F  
Sbjct: 122 YLTLLKFCLKQRALKEGKQVHAHIKTSGSIG-LYISNRLLDMYAKCG--SLVDAEKVFDE 178

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M  RD+ SWN MI+G VKGG   +AR LFD+MP RD  SW  I+ G  +      A EL+
Sbjct: 179 MVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELY 238

Query: 238 E-----------------------KIP--------HRNI---------VSWSTMVWGYSK 257
                                    IP        H +I         V W +++  Y K
Sbjct: 239 RLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGK 298

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +E A+ +FD+M  + +V WT +I  Y + G  +E   L+  +  + + P+D T   +
Sbjct: 299 CGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGV 358

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA+     LG ++HA + +  F   ++  +ALV MY+KCG ++NA SVF  + + DL
Sbjct: 359 LNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDL 418

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
            SW ++L G A HGQ +KAL  F  +   G  PD   F+GVL AC HAG +DKG++YF+S
Sbjct: 419 FSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHS 478

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           ++  +G+   ++HY C+IDLL R+G+  EA  ++  MP++P+  IW  LLG CR H  +E
Sbjct: 479 IKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLE 538

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           LA+     L  ++  +P  Y  L+NI+A+ G   + AN+R  M      K  G S +E+ 
Sbjct: 539 LAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIR 598

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            EVH FSV D  HPKS++I + ++ L K +K VG+
Sbjct: 599 REVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGY 633



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 189/422 (44%), Gaps = 63/422 (14%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K + L + KQ+ A I K       YI+ +L+   A C  +  A KVF+++   D+  +N 
Sbjct: 131 KQRALKEGKQVHAHI-KTSGSIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNI 189

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW--------------- 130
           +I   V+     +A  +F  M  +    DNF++  ++  C   N                
Sbjct: 190 MISGYVKGGNFEKARNLFDKMPNR----DNFSWTAIISGCVQHNRPEEALELYRLMQKHD 245

Query: 131 ---------------------FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
                                 H+ + IH  I + G   D  V  SL+D Y KCG   + 
Sbjct: 246 YSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCG--SIE 303

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
            A+ +F  M ERD+VSW +MI   +K G   E   LF     R  ++ N + + +  AG 
Sbjct: 304 EARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALF-----RHLMNSNIMPNDFTFAGV 358

Query: 230 MN----LAFELFEKIPHRNIV---------SWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           +N    LA E   K  H  +V         + S +V  YSK GD+E AK +F+ +P   L
Sbjct: 359 LNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDL 418

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
             WT ++ GYA+ G   +A   ++ + ++G KPD    I +L+ACA +GL+  G++   S
Sbjct: 419 FSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHS 478

Query: 337 I-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
           I  K+      +    ++D+ A+ G    A S+ N M  K D   W A+L G  +HG  E
Sbjct: 479 IKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLE 538

Query: 395 KA 396
            A
Sbjct: 539 LA 540



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 88/403 (21%), Positives = 170/403 (42%), Gaps = 52/403 (12%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  K++   I+++ L  D  +   L+     C  +  A  +F+ +++ DV  + T+I 
Sbjct: 266 SLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIH 325

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             ++N    + F +F  +    +  ++FT+  +L AC       L + IHA + + G+  
Sbjct: 326 TYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDS 385

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                ++L+  YSKCG   +  AK +F  + + D+ SW S++ G  + G+  +A   F+ 
Sbjct: 386 FSSAASALVHMYSKCG--DIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFEL 443

Query: 209 M----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           +     + D +++  +L   A AG ++   E F  I  ++ ++                 
Sbjct: 444 LLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLT----------------- 486

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
                    +T+  +  II   A  G   EA  + ++M    +KPD     ++L  C   
Sbjct: 487 ---------RTIDHYACIIDLLARAGQFTEAESIINEMP---IKPDKYIWAALLGGCRIH 534

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV-----FNGMTKKDLVS 379
           G L L  +   S+ +   + N      L ++YA  G      ++       G+ KK  +S
Sbjct: 535 GNLELAKRAAKSLFEIEPE-NPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMS 593

Query: 380 W-------NAMLYGLAMHGQGEKALGLFS----RMKDEGFGPD 411
           W       +    G   H + ++ L   S    RMK+ G+ PD
Sbjct: 594 WIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVPD 636


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 195/611 (31%), Positives = 322/611 (52%), Gaps = 41/611 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K   L +  Q+   I+K+  +RD ++   LI     C ++    +VF+ + + +V  + +
Sbjct: 151 KSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTS 210

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    +     +A  +F +M E G+  ++ T   ++ AC       L + +   I +  
Sbjct: 211 LIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE 270

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              +  + N+L+D Y KCG   +  A+K+F    ++++V +N++++  V+ G   E   +
Sbjct: 271 LEVNALMVNALVDMYMKCG--AIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAV 328

Query: 206 FDEM------PER-------------DAVS----------------W----NTILDGYAK 226
             EM      P+R             D VS                W    N I++ Y K
Sbjct: 329 LGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMK 388

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            G+  +A  +F+++ ++  VSW++++ G+ ++GDME A  +F  MP   LV W  +I   
Sbjct: 389 CGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGAL 448

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
            ++ M KEA  L+  M+  G+  D  T++ + +AC   G L L   +H  I K     + 
Sbjct: 449 VQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDM 508

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           ++  ALVDM+A+CG   +AM VFN M K+D+ +W A +  +AM G G  A+ LF  M  +
Sbjct: 509 HLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQ 568

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  PD   FV +L A +H G +++G   F SM+  YGI PQ  HYGCM+DLLGR+G L E
Sbjct: 569 GIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSE 628

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           AL L+ SM +EPN +IWG+LL ACR H  V++A    + +  L     G + +LSNI+A+
Sbjct: 629 ALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYAS 688

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
            G W+ VA VRL +K+  A K  G+SS+E++ ++ EF+  D+ HP+   I  M+  +   
Sbjct: 689 AGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCR 748

Query: 587 LKPVGHAAKLS 597
           L+ +G+   L+
Sbjct: 749 LRDIGYVPDLT 759



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 159/545 (29%), Positives = 257/545 (47%), Gaps = 65/545 (11%)

Query: 23  NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL---------AIKVFN 73
           +  KCK + + KQL +QI K  L   P     LISS   C +MG          A+++F 
Sbjct: 39  SFKKCKTMTELKQLHSQITKNGLNHHPLSLTNLISS---CTEMGTFESLEYAQKALELF- 94

Query: 74  DIQDPDV----HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            I+D  +    +++++LIR      L  +A  VF  +   G   DNFT+PF+L AC    
Sbjct: 95  -IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSA 153

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
                  +H  I K G+  D+FV NSLI  Y +CG   +   +++F  M ER++VSW S+
Sbjct: 154 ALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECG--EIDCMRRVFDKMSERNVVSWTSL 211

Query: 190 IAGLVKGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-- 243
           I G  K G   EA  LF EM E     ++V+   ++   AK  ++ L  ++   I     
Sbjct: 212 IGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELEL 271

Query: 244 --NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N +  + +V  Y K G ++ A+ +FD    K LV +  I+S Y  +G+A+E   +  +
Sbjct: 272 EVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGE 331

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC-- 359
           M + G +PD  T++S ++AC+E   +  G   H  + +   +   NVCNA+++MY KC  
Sbjct: 332 MLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGK 391

Query: 360 -----------------------------GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
                                        G +++A  +F+ M   DLVSWN M+  L   
Sbjct: 392 QEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQE 451

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
              ++A+ LF  M+ EG   DK T VGV  AC + G +D   ++ +   +   I   +  
Sbjct: 452 SMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHL 510

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCL 506
              ++D+  R G  + A+++   M V+ +   W   +GA         A+EL +E+L   
Sbjct: 511 GTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQG 569

Query: 507 IRLKG 511
           I+  G
Sbjct: 570 IKPDG 574



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 13/254 (5%)

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           ++ +I G++  G+  +A  ++ Q+   G  PD+ T   +L+AC +S  L  G +VH +I 
Sbjct: 107 FSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIV 166

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           K  F+ +  V N+L+  Y +CG +D    VF+ M+++++VSW +++ G A  G  ++A+ 
Sbjct: 167 KMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVS 226

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY---FYSMERDYGILPQVEHYGCMI 455
           LF  M + G  P+  T VGV+ AC     +  G Q       +E +   L        ++
Sbjct: 227 LFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNAL----MVNALV 282

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSD 513
           D+  + G + +A ++     V+ N +++ T++    +     LA EVL  L  +   G  
Sbjct: 283 DMYMKCGAIDKARKIFDEC-VDKNLVLYNTIMSNYVRQG---LAREVLAVLGEMLKHGPR 338

Query: 514 PGNYTMLSNIFAAT 527
           P   TMLS + A +
Sbjct: 339 PDRITMLSAVSACS 352


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 201/577 (34%), Positives = 318/577 (55%), Gaps = 22/577 (3%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +QL A  IK     D  +   ++   A    +  A + F  +   +V   N ++  
Sbjct: 268 LSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVG 327

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFG 148
            V+  L A+A ++F  M   GV  D  +   +  AC   K +F  +Q +H L  K G+  
Sbjct: 328 LVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ-VHCLAVKSGFDV 386

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+ V N+++D Y KC    +  A  +F  M +RD VSWN++IA L +     +     +E
Sbjct: 387 DVCVRNAILDLYGKCK--ALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNE 444

Query: 209 M----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW---------STMVWGY 255
           M     E D  ++ ++L   A AG  +L + L   + H   +           ST+V  Y
Sbjct: 445 MLRSGMEPDDFTYGSVLK--ACAGLQSLEYGL---VVHGKAIKSGLGLDAFVSSTVVDMY 499

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K G +  A+ L DR+  + LV W  IISG++    ++EA R + +M + G+KPD  T  
Sbjct: 500 CKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYA 559

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           ++L  CA    + LG ++H  I K     +  + + LVDMYAKCG++ +++ +F    K 
Sbjct: 560 TVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKL 619

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D VSWNAM+ G A+HGQG +AL +F RM+     P+  TFV VL AC+H G +D G QYF
Sbjct: 620 DFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYF 679

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
           + M   Y ++PQ+EH+ CM+D+LGRS   +EAL  ++SMP+E +A++W TLL  C+    
Sbjct: 680 HLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQD 739

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           VE+AE     ++RL   D   Y +LSN++A +G W  V+  R  M++ R +K  G S +E
Sbjct: 740 VEVAETAASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIE 799

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V +E+H F V D++HP+S+++Y+M+N+L  ++K  G+
Sbjct: 800 VQSEMHGFLVGDKVHPRSKEVYEMLNSLIGEMKLSGY 836



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 213/464 (45%), Gaps = 23/464 (4%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F  + DPDV  +NTLI    Q+ +   +  + ++M  +GV  D  T   LLK+C G
Sbjct: 104 AASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVLLKSCGG 163

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            +   L   IHAL  K G   D+   ++L+D Y KC  +  +L  + F  MGER+ VSW 
Sbjct: 164 LDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDAL--RFFHGMGERNSVSWG 221

Query: 188 SMIAGLVKGGELSEARRLFDEMPERD-AVSWNTILDGYAKAGEM-------NLAFELFEK 239
           + IAG V+  + +    LF +M      VS       +     M        L     + 
Sbjct: 222 AAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTARQLHAHAIKN 281

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +   + V  + +V  Y+K G++  A+  F  +P   +     ++ G    G+  EA +L+
Sbjct: 282 VFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLGAEAMQLF 341

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M  +G+  D  +L  + +ACAE      G++VH    K  F  +  V NA++D+Y KC
Sbjct: 342 QFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKC 401

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
            +L  A  VF  M ++D VSWNA++  L  +   E  +   + M   G  PD +T+  VL
Sbjct: 402 KALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVL 461

Query: 420 CACTHAGFIDKG-VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--- 475
            AC     ++ G V +  +++   G+   V     ++D+  + G + EA +L   +    
Sbjct: 462 KACAGLQSLEYGLVVHGKAIKSGLGLDAFVS--STVVDMYCKCGAITEAQKLHDRIGGQE 519

Query: 476 -VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            V  N+II G  L   +   A     E+LD      G  P ++T
Sbjct: 520 LVSWNSIISGFSLTK-QSEEAQRFFSEMLD-----MGVKPDHFT 557



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 123/457 (26%), Positives = 195/457 (42%), Gaps = 44/457 (9%)

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
           V T  F++ + L A  G++     Q  HA +   G+    FV N L+  Y++CG  G + 
Sbjct: 15  VATATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCG--GTAH 72

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A  +F +M  RD VSWN+M+   V  G+   A  LF  MP+ D VSWNT++ GY + G  
Sbjct: 73  AHGVFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMF 132

Query: 231 NLAFELFEKIPHRNIV---------------------------------------SWSTM 251
             +  L  ++  R +                                        + S +
Sbjct: 133 RNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSAL 192

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y K   ++ A   F  M  +  V W   I+G  +         L+ QM+  GL    
Sbjct: 193 VDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQ 252

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
               S   +CA    L    ++HA   K  F  +  V  A+VD+YAK G+L +A   F G
Sbjct: 253 PAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIG 312

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           +   ++ + NAM+ GL   G G +A+ LF  M   G G D  +  GV  AC       +G
Sbjct: 313 LPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQG 372

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           +Q  + +    G    V     ++DL G+   L EA  + Q M  + +++ W  ++ A  
Sbjct: 373 LQ-VHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALE 430

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           ++   E     L+ ++R  G +P ++T  S + A  G
Sbjct: 431 QNECYEDTIAHLNEMLR-SGMEPDDFTYGSVLKACAG 466



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 173/367 (47%), Gaps = 12/367 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K   Q  Q+    +K     D  +   ++     C+ +  A  VF +++  D   +N +I
Sbjct: 367 KGYFQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAII 426

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A  QN           +M   G+  D+FTY  +LKAC G        ++H    K G  
Sbjct: 427 AALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLG 486

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D FV ++++D Y KCG   ++ A+KL   +G +++VSWNS+I+G     +  EA+R F 
Sbjct: 487 LDAFVSSTVVDMYCKCG--AITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFS 544

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDG 259
           EM +     D  ++ T+LD  A    + L  ++  +I  + ++      ST+V  Y+K G
Sbjct: 545 EMLDMGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG 604

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           +M  + L+F++      V W  +I GYA  G   EA  ++++M+ A + P+  T +++L 
Sbjct: 605 NMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLR 664

Query: 320 ACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDL 377
           AC+  GLL  G +  H   ++Y+          +VD+  +      A+     M  + D 
Sbjct: 665 ACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADA 724

Query: 378 VSWNAML 384
           V W  +L
Sbjct: 725 VVWKTLL 731


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/428 (41%), Positives = 256/428 (59%), Gaps = 2/428 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A++LF SM  RD+VSWN+M++GL K G + EA+ +F  MP R++VSWN ++ G+A + +M
Sbjct: 148 ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 207

Query: 231 NLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           + A E F   P + + V W+ MV GY   G++  A   F+ MP + LV W  +++GY + 
Sbjct: 208 SAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKN 267

Query: 290 GMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
             A +A RL+  M  EA ++P+  TL S+L  C+    LG G ++H    K     N  V
Sbjct: 268 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTV 327

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             +LV MY KCG L +A  +F  M  +D+V+WNAM+ G A HG G++A+ LF RMKDEG 
Sbjct: 328 GTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 387

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            P+  TFV VL AC H G  D G++ F  M+  YGI P+V+HY CM+DLL R+G+L+ A+
Sbjct: 388 EPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 447

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            L++SMP EP+   +GTLL ACR +  +E AE     LI       G Y  L+NI+A   
Sbjct: 448 DLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGAN 507

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W+ V+ VR  MK     K  G S +E+   +HEF   D+LHP+   I++ +  L + +K
Sbjct: 508 QWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMK 567

Query: 589 PVGHAAKL 596
            +G+   L
Sbjct: 568 AMGYVPDL 575



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 169/407 (41%), Gaps = 75/407 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKG-GELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           A++ F S   +   ++N ++AG  +  G L++AR LFD +P  DAVS+NT+L  +  +G+
Sbjct: 85  AEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGD 144

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A  LF  +P R++VSW+TMV G SK G +E AK +F  MP +  V W  ++SG+A  
Sbjct: 145 ADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACS 204

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
                A   +    E G    D  L +                                 
Sbjct: 205 RDMSAAEEWFRNAPEKG----DAVLWT--------------------------------- 227

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGF 408
            A+V  Y   G++  A+  F  M  ++LVSWNA++ G   +   + AL LF  M ++   
Sbjct: 228 -AMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 286

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQY------------------FYSMERDYGILPQ--- 447
            P+  T   VL  C++   +  G Q                     SM    G L     
Sbjct: 287 QPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACK 346

Query: 448 ---------VEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNA 495
                    V  +  MI    + G  KEA+ L + M    VEPN I +  +L AC     
Sbjct: 347 LFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGL 406

Query: 496 VELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVANVRLQM 540
            +      + +  L G +P   +Y+ + ++    G   +  ++   M
Sbjct: 407 CDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 12/215 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           AI+ F  +   ++  +N ++   V+NS    A R+F  M +E  V  +  T   +L  C+
Sbjct: 242 AIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 301

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +     + IH    K     ++ V  SL+  Y KCG   +S A KLF  M  RD+V+W
Sbjct: 302 NLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG--DLSSACKLFGEMHTRDVVAW 359

Query: 187 NSMIAGLVKGGELSEARRLF----DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241
           N+MI+G  + G+  EA  LF    DE  E + +++  +L      G  +     FE +  
Sbjct: 360 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 419

Query: 242 ----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                  +  +S MV    + G +E A  L   MP
Sbjct: 420 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 454



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     KQ+    +KL L R+  +   L+S    C  +  A K+F ++   DV  +
Sbjct: 300 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 359

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I    Q+    +A  +F  M+++GV  +  T+  +L AC
Sbjct: 360 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 401


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 306/573 (53%), Gaps = 43/573 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACN 126
           A+++FN + + D   +NTLI    Q+    Q   +F++M  +G F+ NF TY  +L AC 
Sbjct: 231 ALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQG-FSPNFMTYGSVLSACA 289

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +       +HA I +  +  D+   N LID Y+KCG +   LAK++F S+ E D +SW
Sbjct: 290 STSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCL--DLAKRVFKSLREHDHISW 347

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAV------------------------------- 215
           NS+I G+V  G   +A  LF++M     V                               
Sbjct: 348 NSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIK 407

Query: 216 --------SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                     N I+  YAK G+ + A  +F  +P RN +SW+ M+  +S+ GD+  A+  
Sbjct: 408 SGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGY 467

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MP + +V W  ++S Y + G ++E  +LY  M   G++PD  T  + + ACA+  ++
Sbjct: 468 FDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIV 527

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LGM+V     K+    N +V N++V MY++CG +  A + F+ +  KDL+SWNAML   
Sbjct: 528 KLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAF 587

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A +G G K +  F  M      P+  ++V VL  C+H G + +G  YF SM R +GI P 
Sbjct: 588 AQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPT 647

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            EH+ CM+DLLGR+G L++A  L++ MP +PNA +W  LLG+CR H+ + LAE     L+
Sbjct: 648 NEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLM 707

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L       Y +LSN+++ +G+ + VA++R  MK    +   G S +EVDN VH F+V +
Sbjct: 708 ELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDE 767

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
             HP+ +++Y  +  + K ++  G    + + +
Sbjct: 768 TSHPQIKEVYLKLEEMMKMIEDTGKYITVESSV 800



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 133/541 (24%), Positives = 231/541 (42%), Gaps = 81/541 (14%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND--IQDPDVHL 82
           H   N   T   F Q+ +    R+ +    +I +L    +M  A K+F++  ++  D   
Sbjct: 51  HMYSNCGLTHDAF-QVFQETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVS 109

Query: 83  YNTLIRACVQNSLNAQAFRVF----LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           + T+I    QN  ++++F  F     D  + G   D F++  ++KAC       L   +H
Sbjct: 110 WTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLH 169

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           AL+ K G+  +  + NS++  Y KCG   V LA+ +F  +    +  WNSMI G  +   
Sbjct: 170 ALVSKLGFGMETCIQNSVVGMYVKCG--DVDLAETVFFDIERPSLFCWNSMIYGYSQMYG 227

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI------------- 245
             +A ++F+ MPERD VSWNT++  +++ G       +F ++ ++               
Sbjct: 228 PYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSA 287

Query: 246 -VSWSTMVWG-------------------------YSKDGDMEMAKLLFDRMPAKTLVPW 279
             S S + WG                         Y+K G +++AK +F  +     + W
Sbjct: 288 CASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISW 347

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I+G    G+ ++A  L++QM  + +  D+  L +IL  C+       G  +H    K
Sbjct: 348 NSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIK 407

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSV------------------------------- 368
                +  V NA++ MYAKCG  D A  V                               
Sbjct: 408 SGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGY 467

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ M ++++V+WN+ML     +G  E+ L L+  M+  G  PD  TF   + AC     +
Sbjct: 468 FDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIV 527

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
             G+Q      + +G+   V     ++ +  R G +KEA     S+  + + I W  +L 
Sbjct: 528 KLGMQVVTHATK-FGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSID-DKDLISWNAMLA 585

Query: 489 A 489
           A
Sbjct: 586 A 586



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/480 (24%), Positives = 222/480 (46%), Gaps = 35/480 (7%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+ +  ++L AQ+I   L    ++   L+   + C     A +VF +    ++  +NT+I
Sbjct: 22  KSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMI 81

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL--VQMIHALIYKCG 145
           RA V +S  + A ++F +M  +    D+ ++  ++   + +N FH    +    +I    
Sbjct: 82  RALVSSSRMSDAEKLFDEMPVR--VKDSVSWTTMISGYS-QNGFHSRSFETFSLMIRDTN 138

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
             G  + P S       CG +G S           R  +  +++++ L  G E       
Sbjct: 139 DGGKNYDPFSFTSVMKACGSLGDS-----------RLAIQLHALVSKLGFGME------- 180

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
                       N+++  Y K G+++LA  +F  I   ++  W++M++GYS+      A 
Sbjct: 181 --------TCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKAL 232

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F+RMP +  V W  +IS +++ G   +   ++ +M   G  P+  T  S+L+ACA + 
Sbjct: 233 QIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTS 292

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G  +HA I +     +    N L+DMYAKCG LD A  VF  + + D +SWN+++ 
Sbjct: 293 DLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLIT 352

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG-VQYFYSMERDYGI 444
           G+   G GE AL LF++M+      D++    +L  C+   +   G + + Y+++   G 
Sbjct: 353 GVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGS 412

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
              V +   +I +  + G   +A  + + MP+  N I W  ++ A  +   +  A    D
Sbjct: 413 SAPVGN--AIITMYAKCGDTDKADLVFRLMPLR-NTISWTAMITAFSRSGDIGKARGYFD 469



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 182/403 (45%), Gaps = 43/403 (10%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L     L A+I++++   D      LI   A C  + LA +VF  +++ D   +N+LI 
Sbjct: 293 DLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLIT 352

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V   L   A  +F  M+   V  D F  P +L  C+G ++    +++H    K G   
Sbjct: 353 GVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGS 412

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
              V N++I  Y+KCG      A  +F  M  R+ +SW +MI    + G++ +AR  FD 
Sbjct: 413 SAPVGNAIITMYAKCG--DTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDM 470

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELF------------------------------- 237
           MPER+ V+WN++L  Y + G      +L+                               
Sbjct: 471 MPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLG 530

Query: 238 -EKIPHR-------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + + H        N+   +++V  YS+ G ++ AK  FD +  K L+ W  +++ +A+ 
Sbjct: 531 MQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQN 590

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV- 348
           G+  +    ++ M +   KP+  + +S+L+ C+  GL+  G     S+ +      TN  
Sbjct: 591 GLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEH 650

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMH 390
            + +VD+  + G L+ A  +  GM  K +   W+A+L    +H
Sbjct: 651 FSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVH 693


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/428 (41%), Positives = 256/428 (59%), Gaps = 2/428 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A++LF SM  RD+VSWN+M++GL K G + EA+ +F  MP R++VSWN ++ G+A + +M
Sbjct: 99  ARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDM 158

Query: 231 NLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           + A E F   P + + V W+ MV GY   G++  A   F+ MP + LV W  +++GY + 
Sbjct: 159 SAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKN 218

Query: 290 GMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
             A +A RL+  M  EA ++P+  TL S+L  C+    LG G ++H    K     N  V
Sbjct: 219 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTV 278

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             +LV MY KCG L +A  +F  M  +D+V+WNAM+ G A HG G++A+ LF RMKDEG 
Sbjct: 279 GTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            P+  TFV VL AC H G  D G++ F  M+  YGI P+V+HY CM+DLL R+G+L+ A+
Sbjct: 339 EPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            L++SMP EP+   +GTLL ACR +  +E AE     LI       G Y  L+NI+A   
Sbjct: 399 DLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGAN 458

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W+ V+ VR  MK     K  G S +E+   +HEF   D+LHP+   I++ +  L + +K
Sbjct: 459 QWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMK 518

Query: 589 PVGHAAKL 596
            +G+   L
Sbjct: 519 AMGYVPDL 526



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 169/407 (41%), Gaps = 75/407 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKG-GELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           A++ F S   +   ++N ++AG  +  G L++AR LFD +P  DAVS+NT+L  +  +G+
Sbjct: 36  AEEAFASTPRKTTATYNCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGD 95

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A  LF  +P R++VSW+TMV G SK G +E AK +F  MP +  V W  ++SG+A  
Sbjct: 96  ADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACS 155

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
                A   +    E G    D  L +                                 
Sbjct: 156 RDMSAAEEWFRNAPEKG----DAVLWT--------------------------------- 178

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGF 408
            A+V  Y   G++  A+  F  M  ++LVSWNA++ G   +   + AL LF  M ++   
Sbjct: 179 -AMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQY------------------FYSMERDYGILPQ--- 447
            P+  T   VL  C++   +  G Q                     SM    G L     
Sbjct: 238 QPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACK 297

Query: 448 ---------VEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNA 495
                    V  +  MI    + G  KEA+ L + M    VEPN I +  +L AC     
Sbjct: 298 LFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGL 357

Query: 496 VELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVANVRLQM 540
            +      + +  L G +P   +Y+ + ++    G   +  ++   M
Sbjct: 358 CDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 12/215 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           AI+ F  +   ++  +N ++   V+NS    A R+F  M +E  V  +  T   +L  C+
Sbjct: 193 AIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +     + IH    K     ++ V  SL+  Y KCG   +S A KLF  M  RD+V+W
Sbjct: 253 NLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCG--DLSSACKLFGEMHTRDVVAW 310

Query: 187 NSMIAGLVKGGELSEARRLF----DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241
           N+MI+G  + G+  EA  LF    DE  E + +++  +L      G  +     FE +  
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 370

Query: 242 ----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                  +  +S MV    + G +E A  L   MP
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMP 405



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     KQ+    +KL L R+  +   L+S    C  +  A K+F ++   DV  +
Sbjct: 251 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 310

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I    Q+    +A  +F  M+++GV  +  T+  +L AC
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTAC 352


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 198/582 (34%), Positives = 313/582 (53%), Gaps = 10/582 (1%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           + +C  L   K L A I+K  L   P++   LI+  A    +  A  +F+     +V L+
Sbjct: 11  IKQCVTLEALKSLHASILKSHLH--PHLCTSLIAQYASLGSISHAYALFSTSHSSNVFLW 68

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +IRA      +  + R++  M + G+   NFT+PFLLKAC     F L    HA +  
Sbjct: 69  NHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGARAHAHVVV 128

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            GY  D+FV NSL+  Y + G    S  +++F  M ER++VSW+SM+      G   E  
Sbjct: 129 FGYESDVFVANSLMAMYGRFGCFDFS--RQVFERMPERNVVSWSSMVGAYAHNGRYEEGL 186

Query: 204 RLFDEM-PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM----VWGYSKD 258
            LF  M  E  A +  +I++  A     + A +    +    + S  ++    +  Y++ 
Sbjct: 187 LLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARC 246

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +++A+  F  +  K LV WT +I  Y +  +   A  L+ QM+  G+ PD  TL+S++
Sbjct: 247 GRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLI 306

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            A +      L   VH  I +  FK +  +  A++D+Y KCG+L+ A   F+ M+ ++L+
Sbjct: 307 HAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRMSARNLI 366

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW+ M+ G  MHG G +AL LF +MK     PD   FV VL AC+H G I +G + F +M
Sbjct: 367 SWSTMISGYGMHGHGREALCLFDQMK-ASIKPDHIAFVMVLSACSHGGLIAEGWECFKAM 425

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            RD+G+ P+ EHY CM+DLLGR+GRL EA   ++ MP+ P+A +WG LLGACR H+ +E 
Sbjct: 426 NRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIHSNLET 485

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE     L  L   +PG Y +LSNI+A++G   +  ++R  MK    +K  G + +E+ N
Sbjct: 486 AETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTIIEIKN 545

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           +V+ F   D  +P+++ IY  +  L   ++  G+   LS ++
Sbjct: 546 KVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYVPDLSFKL 587


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 176/428 (41%), Positives = 255/428 (59%), Gaps = 2/428 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A++LF SM  RD+ SWN+M++GL K G + EA+ +F  MP R++VSWN ++ G+A +G+M
Sbjct: 99  ARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACSGDM 158

Query: 231 NLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           + A E F   P + + V W+ MV GY   G++  A   F+ MP + LV W  +++GY + 
Sbjct: 159 STAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKN 218

Query: 290 GMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
             A +A RL+  M  EA ++P+  TL S+L  C+    LG G ++H    K     N  V
Sbjct: 219 SHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTV 278

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             +LV MY KCG L +A  +F  M  +D+V+WNAM+ G A HG G++A+ LF RMKDEG 
Sbjct: 279 GTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            P+  TFV VL AC H G  D G+Q F  M+  YGI P+V+HY CM+DLL R+G+L+ A+
Sbjct: 339 EPNWITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAV 398

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             ++SMP EP+   +GTLL ACR +  +E AE     LI       G Y  L+NI+A   
Sbjct: 399 DFIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVAN 458

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W+ V+ VR  MK     K  G S +E+   +HEF   D+LHP+   I++ +  L + +K
Sbjct: 459 QWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMK 518

Query: 589 PVGHAAKL 596
            +G+   L
Sbjct: 519 EMGYVPDL 526



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 169/402 (42%), Gaps = 75/402 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKG-GELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           A++ F+S   +   ++N ++AG  +  G L++AR LFD +P  D VS+NT+L  +  +G+
Sbjct: 36  AEEAFVSTPRKTTATYNCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGD 95

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A  LF  +P R++ SW+TMV G SK G +E AK++F  MP +  V W  ++SG+A  
Sbjct: 96  ADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSVSWNAMVSGFACS 155

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G    A   +    E     +D  L +                                 
Sbjct: 156 GDMSTAEEWFRNAPE----KEDAVLWT--------------------------------- 178

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGF 408
            A+V  Y   G++  A+  F  M  ++LVSWNA++ G   +   + AL LF  M ++   
Sbjct: 179 -AMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANV 237

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQY------------------FYSMERDYGILPQ--- 447
            P+  T   VL  C++   +  G Q                     SM    G L     
Sbjct: 238 QPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACI 297

Query: 448 ---------VEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNA 495
                    V  +  MI    + G  KEA+ L + M    VEPN I +  +L AC     
Sbjct: 298 LFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGL 357

Query: 496 VELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVAN 535
            +   +  + +  L G +P   +Y+ + ++    G   +  +
Sbjct: 358 CDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVD 399



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 12/215 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           AIK F  +   ++  +N ++   V+NS    A R+F  M +E  V  +  T   +L  C+
Sbjct: 193 AIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +     + IH    K     ++ V  SL+  Y KCG   +S A  LF  M  RD+V+W
Sbjct: 253 NLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCG--DLSSACILFGEMHTRDVVAW 310

Query: 187 NSMIAGLVKGGELSEARRLF----DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241
           N+MI+G  + G+  EA  LF    DE  E + +++  +L      G  +   + FE +  
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQE 370

Query: 242 ----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                  +  +S MV    + G +E A      MP
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMP 405



 Score = 45.4 bits (106), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     KQ+    +KL L R+  +   L+S    C  +  A  +F ++   DV  +
Sbjct: 251 CSNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAW 310

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I    Q+    +A  +F  M+++GV  +  T+  +L AC
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTAC 352


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 203/587 (34%), Positives = 322/587 (54%), Gaps = 21/587 (3%)

Query: 31  NQTKQLFAQIIKLDLQRDPY--IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N   Q+ A  +KL    +P+  ++  L+ S    R++ LA  +F +I + D   +NTLI 
Sbjct: 164 NAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLIT 223

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              ++ L  ++  +FL M++ G    +FT+  +LKA  G + F L Q +HAL    G+  
Sbjct: 224 GYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSR 283

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D  V N ++D YSK   V  +  + LF  M E D VS+N +I+   +  +   +   F E
Sbjct: 284 DASVGNQILDFYSKHDRVLET--RMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFRE 341

Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELF--------EKIPHRNIVSWSTMVWGYS 256
           M     +R    + T+L   A    + +  +L         + I H      +++V  Y+
Sbjct: 342 MQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVG----NSLVDMYA 397

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K    E A+L+F  +P +T V WT +ISGY +KG+     +L+ +M  + L+ D  T  +
Sbjct: 398 KCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFAT 457

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L A A    L LG ++HA I +     N    + LVDMYAKCGS+ +A+ VF  M  ++
Sbjct: 458 VLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRN 517

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            VSWNA++   A +G GE A+G F++M + G  PD  + +GVL AC+H GF+++G +YF 
Sbjct: 518 AVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQ 577

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           +M   YGI P+ +HY CM+DLLGR+GR  EA +L+  MP EP+ I+W ++L ACR H   
Sbjct: 578 AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQ 637

Query: 497 ELAEEVLDCLIRL-KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            LAE   + L  + K  D   Y  +SNI+AA G+W KV +V+  M++   +K    S VE
Sbjct: 638 SLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVE 697

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           V++++H FS  DQ HP  ++I + IN L  +++  G+    S+ + +
Sbjct: 698 VNHKIHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQD 744



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 200/434 (46%), Gaps = 16/434 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT--DNFTYPFLLKAC 125
           A  +F+ + D  V  +  L+    +NS   +AF++F  M      T  D+ T+  LL  C
Sbjct: 98  ARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGC 157

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIF--VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           N     + V  +HA   K G+  + F  V N L+ SY  C V  + LA  LF  + E+D 
Sbjct: 158 NDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSY--CEVRRLDLACVLFEEIPEKDS 215

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-- 241
           V++N++I G  K G  +E+  LF +M +      +    G  KA      F L +++   
Sbjct: 216 VTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHAL 275

Query: 242 ------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                  R+    + ++  YSK   +   ++LFD MP    V + ++IS Y++    + +
Sbjct: 276 SVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEAS 335

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
              + +M+  G    +    ++L+  A    L +G ++H            +V N+LVDM
Sbjct: 336 LHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDM 395

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKC   + A  +F  + ++  VSW A++ G    G     L LF++M+      D+ TF
Sbjct: 396 YAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTF 455

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
             VL A      +  G Q    + R  G L  V     ++D+  + G +K+A+++ + MP
Sbjct: 456 ATVLKASASFASLLLGKQLHAFIIRS-GNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMP 514

Query: 476 VEPNAIIWGTLLGA 489
            + NA+ W  L+ A
Sbjct: 515 -DRNAVSWNALISA 527



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 181/399 (45%), Gaps = 49/399 (12%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + + A I K G+  D    N +++   + G   VS A+K++  M  ++ VS N+MI+G 
Sbjct: 32  TRRVDARIIKTGFDTDTCRSNFIVEDLLRRG--QVSAARKVYDEMPHKNTVSTNTMISGH 89

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR------NIVS 247
           VK G++S AR LFD MP+R  V+W  ++  YA+    + AF+LF ++         + V+
Sbjct: 90  VKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVT 149

Query: 248 WSTMVWG-------------------------------------YSKDGDMEMAKLLFDR 270
           ++T++ G                                     Y +   +++A +LF+ 
Sbjct: 150 FTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEE 209

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           +P K  V +  +I+GY + G+  E+  L+ +M ++G +P D T   +L A        LG
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            ++HA      F  + +V N ++D Y+K   +     +F+ M + D VS+N ++   +  
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
            Q E +L  F  M+  GF    + F  +L    +   +  G Q     +        + H
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQ--LHCQALLATADSILH 387

Query: 451 YG-CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            G  ++D+  +    +EA  + +S+P +   + W  L+ 
Sbjct: 388 VGNSLVDMYAKCEMFEEAELIFKSLP-QRTTVSWTALIS 425



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 133/308 (43%), Gaps = 15/308 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   +QL  Q +        ++   L+   A C     A  +F  +       +  LI 
Sbjct: 366 SLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALIS 425

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             VQ  L+    ++F  M+   +  D  T+  +LKA        L + +HA I + G   
Sbjct: 426 GYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLE 485

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++F  + L+D Y+KCG   +  A ++F  M +R+ VSWN++I+     G+   A   F +
Sbjct: 486 NVFSGSGLVDMYAKCG--SIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAK 543

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNIV----SWSTMVWGYSKDG 259
           M E     D+VS   +L   +  G +    E F+ + P   I      ++ M+    ++G
Sbjct: 544 MIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNG 603

Query: 260 DMEMAKLLFDRMPAKT-LVPWTIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
               A+ L D MP +   + W+ +++    +  + +A+ AA     ME+        ++ 
Sbjct: 604 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMS 663

Query: 316 SILAACAE 323
           +I AA  E
Sbjct: 664 NIYAAAGE 671


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 190/562 (33%), Positives = 304/562 (54%), Gaps = 68/562 (12%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +NQ KQ+ A  ++  L    ++  KL+        +  A  +F+ I  P V+LYN  I+ 
Sbjct: 1   MNQLKQIHAYSLRNGLDHTKFLIEKLLQ----LPDLPYACTLFDQIPKPSVYLYNKFIQT 56

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
                   + + ++  M  +G   + +++ FL  AC      +  QM+H+   K G+  D
Sbjct: 57  FSSIGHPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASD 116

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +F   +L+D Y+K G+                                 L  AR+LFDEM
Sbjct: 117 MFAMTALLDMYAKLGM---------------------------------LRSARQLFDEM 143

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           P RD  +WN+++ GYA++G M  A ELF K+P RN++SW+ ++ GY+++G    A  +F 
Sbjct: 144 PVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFI 203

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            +                                E G KP++ ++ S+L AC++ G L +
Sbjct: 204 GL------------------------------ENEKGTKPNEVSIASVLPACSQLGALDI 233

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLA 388
           G ++ A      F  N  V NA+++++A+CG+++ A  VF+ + +K++L SWN M+ GLA
Sbjct: 234 GKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLA 293

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG+   AL L+ +M      PD  TFVG+L ACTH G + +G Q F SME  + + P++
Sbjct: 294 VHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKL 353

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHYGC++DLLGR+G L+EA  L+Q+MP+ P+++IWGTLLGAC  H  VEL E   + L +
Sbjct: 354 EHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFK 413

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L+  +PGNY +LSNI+A  GDW+ VA +R  MK     K +G S +EV + +HEF V D+
Sbjct: 414 LEPWNPGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGIHEFIVEDR 473

Query: 569 LHPKSEQIYQMINTLGKDLKPV 590
           +  +  Q + ++  +    +PV
Sbjct: 474 ITSRCVQPFLLLLHVTLAPQPV 495


>gi|224066751|ref|XP_002302197.1| predicted protein [Populus trichocarpa]
 gi|222843923|gb|EEE81470.1| predicted protein [Populus trichocarpa]
          Length = 440

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 174/416 (41%), Positives = 258/416 (62%), Gaps = 9/416 (2%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++   N++I  Y K G   +  A  LF  M  R+ VSW  MI G  + G++  ARR F+E
Sbjct: 22  NVVTWNAMISGYGKNG--DMKSASVLFDKMSTRNAVSWIEMIDGFARSGDMVAARRTFNE 79

Query: 209 MP--ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           +P   ++ V+W  ++DGYA  GEM  A  LFE +P RN   WS+M+ GY K G+++ A+ 
Sbjct: 80  VPFELKNVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFFVWSSMISGYCKIGNVKEARA 139

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +FDR+P + LV W  +I GY++ G  +EA   + +M+  G +PD+ T++ +L+ACA+  L
Sbjct: 140 IFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKMQNEGYEPDEVTVVGVLSACAQLSL 199

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L +G  VH  I     K N  V NALVDMYAKCG L  A  +F  MT K+   WN+M+ G
Sbjct: 200 LDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCGDLTGARLIFERMTNKNNACWNSMISG 259

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
            A+HG+ ++AL  F RM++    PD+ TF+ VL AC H GF++ G++ F  MER YG+  
Sbjct: 260 FAVHGKTKEALEFFGRMEESNEKPDEITFLSVLSACVHGGFVEVGLEIFSKMER-YGLSA 318

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            ++HYGC++DLLGR+GR+++A  L++SMP++PN  +WG  LGACR H   ++ E+V++ +
Sbjct: 319 SIKHYGCLVDLLGRAGRIQDAYHLIKSMPMKPNDTVWGAFLGACRIHMDNDMVEQVVEDV 378

Query: 507 IRLKGS-DPGN---YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
                S D GN   Y +L NI+A +G W K   V + M     QK SG SS+ ++N
Sbjct: 379 CTSDSSVDSGNDPHYALLLNIYAGSGSWEKAGRVSMVMADRGLQKTSGRSSLMLEN 434



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 159/304 (52%), Gaps = 13/304 (4%)

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           YAK G++  + +LFE +P RN+V+W+ M+ GY K+GDM+ A +LFD+M  +  V W  +I
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
            G+A  G    A R ++++    LK +  T   ++   A  G +     +   + +  F 
Sbjct: 62  DGFARSGDMVAARRTFNEVPFE-LK-NVVTWTVMIDGYASKGEMEAARLLFEDMPQRNFF 119

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
               V ++++  Y K G++  A ++F+ +  ++LV+WN+++ G + +G  E+AL  F +M
Sbjct: 120 ----VWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGKM 175

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           ++EG+ PD+ T VGVL AC     +D G +  + M    G+         ++D+  + G 
Sbjct: 176 QNEGYEPDEVTVVGVLSACAQLSLLDVG-KDVHKMICAKGMKLNEFVVNALVDMYAKCGD 234

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLS 521
           L  A  + + M  + NA  W +++     H      +E L+   R++ S+  P   T LS
Sbjct: 235 LTGARLIFERMTNKNNA-CWNSMISGFAVHGKT---KEALEFFGRMEESNEKPDEITFLS 290

Query: 522 NIFA 525
            + A
Sbjct: 291 VLSA 294



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           QR+ ++   +IS       +  A  +F+ +   ++  +N+LI    QN    +A   F  
Sbjct: 115 QRNFFVWSSMISGYCKIGNVKEARAIFDRVPVRNLVNWNSLICGYSQNGFCEEALDAFGK 174

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           MQ +G   D  T   +L AC   +   + + +H +I   G   + FV N+L+D Y+KCG 
Sbjct: 175 MQNEGYEPDEVTVVGVLSACAQLSLLDVGKDVHKMICAKGMKLNEFVVNALVDMYAKCG- 233

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
             ++ A+ +F  M  ++   WNSMI+G    G+  EA   F  M E     D +++ ++L
Sbjct: 234 -DLTGARLIFERMTNKNNACWNSMISGFAVHGKTKEALEFFGRMEESNEKPDEITFLSVL 292

Query: 222 DGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
                 G + +  E+F K+       +I  +  +V    + G ++ A  L   MP K
Sbjct: 293 SACVHGGFVEVGLEIFSKMERYGLSASIKHYGCLVDLLGRAGRIQDAYHLIKSMPMK 349



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 72/150 (48%), Gaps = 8/150 (5%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAKCG + ++  +F  M ++++V+WNAM+ G   +G  + A  LF +M       +  +
Sbjct: 1   MYAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTR----NAVS 56

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           ++ ++     +G +    + F  +  +   L  V  +  MID     G ++ A  L + M
Sbjct: 57  WIEMIDGFARSGDMVAARRTFNEVPFE---LKNVVTWTVMIDGYASKGEMEAARLLFEDM 113

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           P + N  +W +++    K   V+ A  + D
Sbjct: 114 P-QRNFFVWSSMISGYCKIGNVKEARAIFD 142


>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
 gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
           Group]
 gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
 gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
          Length = 651

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 195/572 (34%), Positives = 306/572 (53%), Gaps = 52/572 (9%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI+  +   D D H +  ++R C+        +R  L  +      D+ T+PFLLKAC  
Sbjct: 87  AIRALSLSDDGDRHGHG-VVRRCLP------LYRALL--RSGTARPDHLTFPFLLKACAR 137

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              +       A + + G   D+FV N+     S  G   +  A++LF     RD+VSWN
Sbjct: 138 LREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRG--PMEDARRLFDRSPVRDLVSWN 195

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVS------------------------------- 216
           ++I G V+ G  +EA  LF  M   DAV                                
Sbjct: 196 TLIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIAAVSGCGQMRDLELGRRLHGFVD 255

Query: 217 ----------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
                      N ++D Y K G + +A  +FE+I HR +VSW+TM+ G++K G M+ A+ 
Sbjct: 256 SDGVSCTVRLMNALMDMYIKCGSLEMAKSVFERIEHRTVVSWTTMIVGFAKFGLMDDARK 315

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +FD MP + + PW  +++GY +    KEA  L+ +M+EA + PD+ T++++L AC++ G 
Sbjct: 316 VFDEMPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGA 375

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L +GM VH  I K+R   +  +  +L+DMYAKCG+++ A+ +F  + +K+ ++W AM+ G
Sbjct: 376 LEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIFKEIPEKNALTWTAMICG 435

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LA HG   +A+  F  M + G  PD+ TF+GVL AC HAG + +G ++F  ME  Y +  
Sbjct: 436 LANHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLER 495

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           +++HY CMIDLLGR+G L EA +LV +MP+EP+A++WG +  ACR    + L E+    L
Sbjct: 496 KMKHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAAMKL 555

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           + +  SD G Y +L+N++A      K   VR  M+    +K  G S +E++  VHEF V 
Sbjct: 556 VEIDPSDSGIYVLLANMYAEANMRKKADKVRAMMRHLGVEKVPGCSCIELNGVVHEFIVK 615

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           D+ H  S  IY  ++ +   +K       +SA
Sbjct: 616 DKSHMDSHAIYDCLHEITLQIKHTADLLSISA 647



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 138/318 (43%), Gaps = 24/318 (7%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           RL+   +    KC +L   K +F +I      R       +I   A    M  A KVF++
Sbjct: 264 RLMNALMDMYIKCGSLEMAKSVFERI----EHRTVVSWTTMIVGFAKFGLMDDARKVFDE 319

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + + DV  +N L+   VQ     +A  +F +MQE  V  D  T   LL AC+      + 
Sbjct: 320 MPERDVFPWNALMTGYVQCKQCKEALSLFHEMQEASVVPDEITMVNLLTACSQLGALEMG 379

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             +H  I K      + +  SLID Y+KCG   +  A  +F  + E++ ++W +MI GL 
Sbjct: 380 MWVHRYIEKHRLVFSVALGTSLIDMYAKCG--NIEKAIHIFKEIPEKNALTWTAMICGLA 437

Query: 195 KGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAG---EMNLAFELFEKIPH--RNI 245
             G  +EA   F  M E     D +++  +L     AG   E    F L E   H  R +
Sbjct: 438 NHGHANEAIEHFRTMIELGQKPDEITFIGVLSACCHAGLVKEGREFFSLMETKYHLERKM 497

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKG---MAKEAARLYDQ 301
             +S M+    + G ++ A+ L + MP +   V W  I      +G   + ++AA     
Sbjct: 498 KHYSCMIDLLGRAGHLDEAEQLVNTMPMEPDAVVWGAIFFACRMQGNISLGEKAA----- 552

Query: 302 MEEAGLKPDDGTLISILA 319
           M+   + P D  +  +LA
Sbjct: 553 MKLVEIDPSDSGIYVLLA 570


>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 531

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/547 (35%), Positives = 283/547 (51%), Gaps = 72/547 (13%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L    ++   L+S+     + G A  +F+++ +  +     + RA   +   AQA  +F 
Sbjct: 42  LHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVARTAMARAHAVSGQAAQALDLFQ 101

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ----MIHALIYKCGYFGDIFVPNSLIDSY 160
           DM   G   DN     +L AC+G       +    M+HA I  CG   D+FV   LI  Y
Sbjct: 102 DMIADGFMPDNVALAVVLAACHGAGSCTARRSPGRMVHAFIVACGIEPDVFVSTELIRVY 161

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
                             GER               GE++ ARR+FD MP +  ++WNT+
Sbjct: 162 ------------------GER---------------GEMTVARRVFDSMPTKSTIAWNTM 188

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           +  Y +  ++  A+ LF  +P R++VSW+T                              
Sbjct: 189 VHQYVRNKDIEAAYRLFLAMPRRDVVSWNT------------------------------ 218

Query: 281 IIISGYAEKGMAKEAARLYDQM---EEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +I+GY   G  KEA  L+ QM       + P+  T+ ++L+ACA +G L  G+ VH  I
Sbjct: 219 -VIAGYCLVGRCKEALGLFRQMVSPSSCTVHPNGPTMSTVLSACAGAGCLETGIWVHLYI 277

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA 396
           +K +   N  +   L+DMYAKCGS+D A+ VF     K+DL SW  ++ GLAMHG+    
Sbjct: 278 DKNQMNDNGTLDRCLIDMYAKCGSIDKALQVFEKAPGKRDLYSWTTVICGLAMHGRANDV 337

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +FS M+D G  PD  TFVGVL AC H G +D+G+ +FYSM+  Y I P++EHYGCMID
Sbjct: 338 LRMFSMMQDSGMCPDDVTFVGVLNACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMID 397

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR GRL EA R++Q+MP++PN +IWG  L AC+ H++VEL E     + RL   DP  
Sbjct: 398 LLGRVGRLPEAYRMIQTMPMKPNMVIWGAFLSACKVHSSVELGEIAAAEVTRLDPDDPWA 457

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
             M+S+++A   DW+ +A  R +M   + +K  G SSV +D EVHEF      HP   +I
Sbjct: 458 RVMMSSMYAKAQDWSGLARERREMNSLQMKKTPGCSSVALDGEVHEFVAGGNQHPLCAEI 517

Query: 577 YQMINTL 583
             ++ T+
Sbjct: 518 CSVLETV 524


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 202/585 (34%), Positives = 312/585 (53%), Gaps = 72/585 (12%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++++    RQ   A+ +F  +   +   +N LI   ++N + ++A RVF  M ++ V + 
Sbjct: 61  MVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVS- 119

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF--GDIFVPNSLIDSYSKCGVVG----- 167
                          W  +V+         GY   GD+     L        VV      
Sbjct: 120 ---------------WTSMVR---------GYVRNGDVAEAERLFWHMPHKNVVSWTVML 155

Query: 168 --------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
                   V  A+KLF  M E+D+V+  +MI G  + G L EAR LFDEMP+R+ V+W  
Sbjct: 156 GGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTA 215

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV-- 277
           ++ GYA+ G++++A +LFE +P RN VSW+ M+ GY+  G M  A  LFD MP K +V  
Sbjct: 216 MVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVC 275

Query: 278 -----------------------------PWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                                         W+ +I  Y  KG   EA  L+ +M+  GL 
Sbjct: 276 NEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLA 335

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
            +  +LIS+L+ C     L  G +VHA + +  F  +  V + L+ MY KCG+L  A  V
Sbjct: 336 LNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQV 395

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           FN    KD+V WN+M+ G + HG GE+AL +F  M   G  PD  TF+GVL AC+++G +
Sbjct: 396 FNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKV 455

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            +G++ F +M+  Y + P +EHY C++DLLGR+ ++ EA++LV+ MP+EP+AI+WG LLG
Sbjct: 456 KEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLG 515

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACR H  ++LAE  ++ L +L+  + G Y +LSN++A  G W  V  +R ++K     K 
Sbjct: 516 ACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKL 575

Query: 549 SGASSVEVDNEVHEFSVCD-QLHPKSEQIYQMINTLGKDLKPVGH 592
            G S +EV+ +VH F+  D + HP+   I +M+  LG  L+  G+
Sbjct: 576 PGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGY 620



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 111/349 (31%), Positives = 177/349 (50%), Gaps = 34/349 (9%)

Query: 171 AKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           A+K+F    +  R + SWN+M+A   +  +  EA  LF++MP+R+ VSWN ++ G+ K G
Sbjct: 41  ARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNG 100

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
            ++ A  +F+ +P RN+VSW++MV GY ++GD+  A+ LF  MP K +V WT+++ G  +
Sbjct: 101 MLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQ 160

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
           +G   +A +L+D M E     D   + +++    E G L     +   + K     N   
Sbjct: 161 EGRVDDARKLFDMMPEK----DVVAVTNMIGGYCEEGRLDEARALFDEMPKR----NVVT 212

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
             A+V  YA+ G +D A  +F  M +++ VSW AML G    G+  +A  LF  M     
Sbjct: 213 WTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM----- 267

Query: 409 GPDKYTFVGVLCACTHAGF-----IDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSG 462
            P K     V+C     GF     +DK  + F  M ERD G       +  MI +  R G
Sbjct: 268 -PVKPV---VVCNEMIMGFGLNGEVDKARRVFKGMKERDNGT------WSAMIKVYERKG 317

Query: 463 RLKEALRLVQSMPVEPNAIIWGTL---LGACRKHNAVELAEEVLDCLIR 508
              EAL L + M  E  A+ + +L   L  C    +++  ++V   L+R
Sbjct: 318 YELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVR 366



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 113/253 (44%), Gaps = 36/253 (14%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  KQ+ AQ+++ +  +D Y+A  LI+    C  +  A +VFN     DV ++N++I 
Sbjct: 353 SLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMIT 412

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+ L  +A  VF DM   GV  D+ T+  +L AC+                   Y G
Sbjct: 413 GYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACS-------------------YSG 453

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            +     L ++  KC                E  I  +  ++  L +  +++EA +L ++
Sbjct: 454 KVKEGLELFETM-KCKY------------QVEPGIEHYACLVDLLGRADQVNEAMKLVEK 500

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMA 264
           MP E DA+ W  +L       +++LA    EK+     +N   +  +   Y+  G     
Sbjct: 501 MPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDV 560

Query: 265 KLLFDRMPAKTLV 277
           ++L +++ A+++ 
Sbjct: 561 EVLREKIKARSVT 573


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 194/576 (33%), Positives = 318/576 (55%), Gaps = 14/576 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++   ++K  L RD ++   L+     C  +  A  VF+ + + DV  ++T+IR+  +N
Sbjct: 114 KEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRN 173

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                A  +  +M    V         ++          + + +HA + +      + VP
Sbjct: 174 KEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVP 233

Query: 154 NS--LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
            +  L+D Y+KCG +G  LA++LF  + ++ +VSW +MIAG ++   L E  +LF  M E
Sbjct: 234 TTTALLDMYAKCGHLG--LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE 291

Query: 212 RD----AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS-----TMVWGYSKDGDME 262
            +     ++  +++      G + L  +L   I  RN  S S      +V  Y K  D+ 
Sbjct: 292 ENIFPNEITMLSLIVECGFTGALQLGKQLHAYIL-RNGFSVSLALATALVDMYGKCSDIR 350

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ LFD    + ++ WT ++S YA+     +A  L+DQM  +G++P   T++S+L+ CA
Sbjct: 351 NARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCA 410

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            +G L LG  VH+ I+K R + +  +  ALVDMYAKCG ++ A  +F     +D+  WNA
Sbjct: 411 VAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 470

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++ G AMHG GE+AL +F+ M+ +G  P+  TF+G+L AC+HAG + +G + F  M   +
Sbjct: 471 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 530

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G++PQ+EHYGCM+DLLGR+G L EA  +++SMP++PN I+WG L+ ACR H   +L E  
Sbjct: 531 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 590

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ ++  + G   ++SNI+AA   W+  A VR  MK    +K  G S +EV+  VHE
Sbjct: 591 ATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHE 650

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           F + DQ HP+  +I +M+  + + L   G+    S 
Sbjct: 651 FLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTST 686



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/427 (28%), Positives = 207/427 (48%), Gaps = 23/427 (5%)

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           NF  P +LKAC   +W  L + IH  + K G   D+FV N+L+  Y +C    V  A+ +
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECAC--VEYARLV 151

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEM 230
           F  M ERD+VSW++MI  L +  E   A  L  EM         V+  ++++ +A    M
Sbjct: 152 FDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANM 211

Query: 231 NLAFELFEKI------PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
            +   +   +       H  + + + ++  Y+K G + +A+ LF+ +  KT+V WT +I+
Sbjct: 212 RMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIA 271

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           G       +E  +L+ +M+E  + P++ T++S++  C  +G L LG ++HA I +  F  
Sbjct: 272 GCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSV 331

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  +  ALVDMY KC  + NA ++F+    +D++ W AML   A     ++A  LF +M+
Sbjct: 332 SLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMR 391

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKG--VQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
             G  P K T V +L  C  AG +D G  V  +   ER   +         ++D+  + G
Sbjct: 392 TSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKER---VEVDCILNTALVDMYAKCG 448

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTML 520
            +  A RL     +  +  +W  ++     H      EE LD    +  +G  P + T +
Sbjct: 449 DINAAGRLFIE-AISRDICMWNAIITGFAMHG---YGEEALDIFAEMERQGVKPNDITFI 504

Query: 521 SNIFAAT 527
             + A +
Sbjct: 505 GLLHACS 511



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 89/194 (45%), Gaps = 20/194 (10%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  K + + I K  ++ D  +   L+   A C  +  A ++F +    D+ ++N +I  
Sbjct: 415 LDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITG 474

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
              +    +A  +F +M+ +GV  ++ T+  LL AC+       GK  F  +     L+ 
Sbjct: 475 FAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVP 534

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAG--LVKGGEL 199
           +  ++G       ++D   + G+  +  A ++  SM  + + + W +++A   L K  +L
Sbjct: 535 QIEHYG------CMVDLLGRAGL--LDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQL 586

Query: 200 SE--ARRLFDEMPE 211
            E  A +L +  PE
Sbjct: 587 GELAATQLLEIEPE 600


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 191/597 (31%), Positives = 323/597 (54%), Gaps = 41/597 (6%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+   ++K+ L +D ++A  LI   A C ++ L  KVF+++ + +V  + +LI      +
Sbjct: 143 QVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVN 202

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           +  +A  +F +M E GV  +  T    + AC       L + +  L+ + G   +  V N
Sbjct: 203 MAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVN 262

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           +L+D Y KCG   +   +++F    ++++V +N++++  V+ G   E   + DEM ++  
Sbjct: 263 ALLDMYMKCG--DMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ 320

Query: 213 --DAVSW-----------------------------------NTILDGYAKAGEMNLAFE 235
             D V+                                    N I+D Y K G+   A +
Sbjct: 321 RPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACK 380

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           +F+ + ++ +V+W++++ G  +DG++E+A  +F  MP   LV W  +I    +  M +EA
Sbjct: 381 VFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEA 440

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             L  +M+  G+K D  T++ I +AC   G L L   ++  I K     +  +  ALVDM
Sbjct: 441 IDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDM 500

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           +++CG   NAM VF  M K+D+ +W A +   A+ G  + A+ LF  M  +    D + F
Sbjct: 501 FSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVF 560

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           V +L A +H G++D+G Q F++ME+ +G+ PQ+ HYGCM+DLLGR+G L+EA  L++SMP
Sbjct: 561 VALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMP 620

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           ++PN +IWG+ L ACRKH  VE A    + + +L     G + +LSNI+A+ G WN VA 
Sbjct: 621 IKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVAR 680

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           VRLQMK+   QK +G+SS+EV   + EF+  D+ H ++ QI  M+  +   +  VG+
Sbjct: 681 VRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGY 737



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 160/521 (30%), Positives = 249/521 (47%), Gaps = 63/521 (12%)

Query: 2   SAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           S+P+  PT   K      K  +L  CK L + KQL   ++K    +  +   KLI   A 
Sbjct: 12  SSPLLLPTTTQK-----PKNSSLQTCKTLIELKQLHCNMLK----KGVFNINKLI---AA 59

Query: 62  CRQMGL------AIKVFNDIQDPDVHLY--NTLIRACVQNSLNAQAFRVFLDMQ-EKGVF 112
           C QMG       A+  F + +     LY  NTLIR    + L  +A  ++L M    G+ 
Sbjct: 60  CVQMGTHESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIV 119

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            DNFT+PFLL AC+    F     +H ++ K G   D+FV NSLI  Y+ CG   V L +
Sbjct: 120 PDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACG--KVDLGR 177

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAG 228
           K+F  M ER++VSW S+I G        EA  LF EM     E + V+    +   AK  
Sbjct: 178 KVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLK 237

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
           ++ L  ++   +    + S + +V      Y K GDM   + +FD    K LV +  I+S
Sbjct: 238 DLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMS 297

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
            Y + G+A E   + D+M + G +PD  T++S +AACA+ G L +G   HA + +   + 
Sbjct: 298 NYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLER 357

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS--- 401
             N+ NA++DMY KCG  + A  VF+ M+ K +V+WN+++ GL   G+ E AL +F    
Sbjct: 358 LDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMP 417

Query: 402 ----------------------------RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
                                        M+++G   D+ T VG+  AC + G +D   +
Sbjct: 418 ESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLA-K 476

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           + Y+      I   ++    ++D+  R G    A+R+ ++M
Sbjct: 477 WIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENM 517



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 8/254 (3%)

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEA-GLKPDDGTLISILAACAESGLLGLGMKV 333
           +L     +I GYA  G+ KEA  +Y  M    G+ PD+ T   +L+AC++      G++V
Sbjct: 85  SLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQV 144

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  + K     +  V N+L+  YA CG +D    VF+ M ++++VSW +++ G ++    
Sbjct: 145 HGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMA 204

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++A+ LF  M + G  P+  T V  + AC     ++ G +   ++  + G+         
Sbjct: 205 KEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELG-KKVCNLMTELGVKSNTLVVNA 263

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KG 511
           ++D+  + G +  A+R +     + N +++ T++    +H    LA EVL  L  +  KG
Sbjct: 264 LLDMYMKCGDMY-AVREIFDEFSDKNLVMYNTIMSNYVQHG---LAGEVLVVLDEMLQKG 319

Query: 512 SDPGNYTMLSNIFA 525
             P   TMLS I A
Sbjct: 320 QRPDKVTMLSTIAA 333



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 24/307 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  K   A + +  L+R   I+  +I     C +   A KVF+ + +  V  +N+LI 
Sbjct: 339 DLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIA 398

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V++     A R+F +M E  + + N     +++A   +    L++ +       G  G
Sbjct: 399 GLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQ----NQGIKG 454

Query: 149 DIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSWNSMIAGLV----KGGELSEAR 203
           D     +++   S CG +G + LAK ++  + + DI     +   LV    + G+   A 
Sbjct: 455 DRV---TMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAM 511

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDG 259
           R+F+ M +RD  +W   +   A  G    A ELF+++  +++ +    +  ++  +S  G
Sbjct: 512 RVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGG 571

Query: 260 DMEMAKLLFDRMP-----AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            ++  + LF  M      +  +V +  ++      G+ +EA   +D M+   +KP+D   
Sbjct: 572 YVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEA---FDLMKSMPIKPNDVIW 628

Query: 315 ISILAAC 321
            S LAAC
Sbjct: 629 GSFLAAC 635


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 178/445 (40%), Positives = 261/445 (58%), Gaps = 4/445 (0%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+  +  CG   +  A ++F +M  RD+ SWN+M++GL K G + EA  +F  MP R+
Sbjct: 76  NTLLSCHFACG--DIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARN 133

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           AVSWN ++   A +G+M  A  LF   P + + + W+ MV GY   G+++ A   F  MP
Sbjct: 134 AVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMP 193

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGM 331
            + LV W  +++GY +   A +A R++  M E+A ++P+  TL S+L  C+    LG G 
Sbjct: 194 VRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGR 253

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           +VH    K     +  V  +L+ MY KCG LD+A  +F+ M  KD+V+WNAM+ G A HG
Sbjct: 254 QVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHG 313

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            G KA+ LF +MKDEG  PD  T + VL AC H G  D G+Q F +M+  Y I PQV+HY
Sbjct: 314 GGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHY 373

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            CM+DLL R+G L+ A+ ++ SMP EP+   +GTLL ACR +  +E AE     LI    
Sbjct: 374 SCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDP 433

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
            + G Y  L+NI+A    W+ V+ VR  MK     K  G S +E+    HEF   D+LHP
Sbjct: 434 QNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHP 493

Query: 572 KSEQIYQMINTLGKDLKPVGHAAKL 596
           + + I+  ++ LGK +K +G++  L
Sbjct: 494 QLDLIHDKLDRLGKLMKAMGYSPDL 518



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 162/328 (49%), Gaps = 19/328 (5%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L+S    C  +  A +VF+ +   DV  +NT++    +N    +A  +F  M  +   + 
Sbjct: 78  LLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSW 137

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           N       +A +G      +     L        D  +  +++  Y   G   V  A + 
Sbjct: 138 NAMVA--ARASSGD-----MGAAENLFRNAPEKTDAILWTAMVSGYMDTG--NVQKAMEY 188

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN-----TILDGYAKAGE 229
           F +M  R++VSWN+++AG VK     +A R+F  M E   V  N     ++L G +    
Sbjct: 189 FRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSA 248

Query: 230 MNLAFELFE---KIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           +    ++ +   K+P  R+I   ++++  Y K GD++ A  LFD M  K +V W  +ISG
Sbjct: 249 LGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISG 308

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKC 344
           YA+ G  ++A +L+++M++ G+ PD  TL+++L AC  +GL   G++   ++ + Y  + 
Sbjct: 309 YAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEP 368

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGM 372
             +  + +VD+  + G L+ A+++ + M
Sbjct: 369 QVDHYSCMVDLLCRAGLLERAVNMIHSM 396



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 163/340 (47%), Gaps = 30/340 (8%)

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKA---GEMNLAFELFEKIPHRNIVSWSTMVWG 254
           +L+ A   F     +   ++N +L GYAKA   G +  A  LF+ IPH + VS++T++  
Sbjct: 22  DLAGAEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLSC 81

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           +   GD++ A  +F  MP + +  W  ++SG ++ G  +EA  ++  M       +  + 
Sbjct: 82  HFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPAR----NAVSW 137

Query: 315 ISILAACAESGLLGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            +++AA A SG +G      A+ N +R    K +  +  A+V  Y   G++  AM  F  
Sbjct: 138 NAMVAARASSGDMG------AAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRA 191

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDK 430
           M  ++LVSWNA++ G   + +   AL +F  M +D    P+  T   VL  C++   +  
Sbjct: 192 MPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGF 251

Query: 431 GVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           G Q + + M+   G    +     ++ +  + G L +A +L   M  + + + W  ++  
Sbjct: 252 GRQVHQWCMKLPLG--RSITVGTSLLSMYCKCGDLDDACKLFDEMHTK-DIVAWNAMISG 308

Query: 490 CRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
             +H     A++L E++ D     +G  P   T+L+ + A
Sbjct: 309 YAQHGGGRKAIKLFEKMKD-----EGVVPDWITLLAVLTA 343



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 12/215 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACN 126
           A++ F  +   ++  +N ++   V+NS    A RVF  M E  +   N  T   +L  C+
Sbjct: 185 AMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCS 244

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +     + +H    K      I V  SL+  Y KCG   +  A KLF  M  +DIV+W
Sbjct: 245 NLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCG--DLDDACKLFDEMHTKDIVAW 302

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAV-SWNT---ILDGYAKAGEMNLAFELFEKIPH 242
           N+MI+G  + G   +A +LF++M +   V  W T   +L      G  +   + FE +  
Sbjct: 303 NAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQE 362

Query: 243 R-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                  +  +S MV    + G +E A  +   MP
Sbjct: 363 AYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMP 397



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     +Q+    +KL L R   +   L+S    C  +  A K+F+++   D+  +
Sbjct: 243 CSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAW 302

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I    Q+    +A ++F  M+++GV  D  T   +L AC
Sbjct: 303 NAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTAC 344


>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
 gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
          Length = 894

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 305/566 (53%), Gaps = 42/566 (7%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-MGLAIKVFNDIQDPDVHLYNTLIR 88
           +   K+L A ++   L    Y   K+I S AL +  +  A KVF  I+ P   L+NTL+R
Sbjct: 324 MEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLLR 383

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+     A   +   QEKG+  DN T+PF+LKAC         + +H+ + K G+  
Sbjct: 384 GLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLL 443

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DIFV NSLI  Y+ CG   +  A+ +F  M  +D+VSWNS+I G  +     E   LF+ 
Sbjct: 444 DIFVSNSLIHLYAACG--DLVCARSIFDEMLVKDVVSWNSLIGGYSQRNRFKEVLALFEL 501

Query: 209 MP---------------------------------------ERDAVSWNTILDGYAKAGE 229
           M                                        E D    NT++D Y + G+
Sbjct: 502 MQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQ 561

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           +  A ++F ++  +N V+ + M+  Y+K G++  AK +FD++P K L+ W+ +I  Y++ 
Sbjct: 562 LQSAEKVFSQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQA 621

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
               ++  L+ QM+ A +KPD   + S+L+ACA  G L LG  +H  + +   K +T + 
Sbjct: 622 SHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIME 681

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N+L+DM+AKCG +  A+ VF  M +KD +SWN+++ GLA +G  ++AL +F  M  EG  
Sbjct: 682 NSLIDMFAKCGCMQEALQVFTEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPR 741

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P++ TF+GVL AC +   + +G+ +F  M+  + + PQ++HYGC++ +L R+G+L++A  
Sbjct: 742 PNEVTFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKN 801

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
            +  MP+ P+ ++W  LLGAC+ H  V +AE     L  L  S+ G+Y +LSNI+A+   
Sbjct: 802 FINEMPLAPDPVVWRILLGACKTHGNVAVAEVATKKLSELDPSNSGDYMLLSNIYASADR 861

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVE 555
           W+   NVR  M  T  +K    S V+
Sbjct: 862 WSDALNVRQWMADTAVRKSPACSVVD 887



 Score =  244 bits (624), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 204/340 (60%), Gaps = 9/340 (2%)

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +P +N+VSW+ ++ G++  G++E A+LLFD+MP + +V WT +I GY    +  EA  L+
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M   G+ P + T+++++ A +  G + +G  +H    K     +  V N+L+D+YAK 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 360 GSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           GS+ N++ VF+ M  +++LVSW +++ G AMHG   +AL LF+ M+  G  P++ TF+ V
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           + AC+H G +++G+ +F SM  +Y I P+++H+GC+ID+LGR+GRL EA ++++ +PVE 
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           N I+W  LLG C K+  VE+ +  +  +  L+    G++ +LSN+    G ++     R 
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGGDFAVLSNVLNELGRFSDAEQARK 300

Query: 539 QMKKTRAQKPSGASSV--------EVDNEVHEFSVCDQLH 570
            + + +  K  G + V        E   ++H   V   LH
Sbjct: 301 LLDERKIVKVPGLALVVTRSFVMMEAVKKLHAHLVVSGLH 340



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 134/277 (48%), Gaps = 45/277 (16%)

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M  +++VSWN +I G    GE+  AR LFD+MP R+ VSW  ++DGY +A     A  LF
Sbjct: 1   MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60

Query: 238 EK----------------IP-------------------HRNIVS----WSTMVWGYSKD 258
                             +P                    + I+S     ++++  Y+K 
Sbjct: 61  RHMMAGGISPSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKI 120

Query: 259 GDMEMAKLLFDRM-PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
           G ++ +  +FD M   + LV WT IISG+A  G++ EA  L+ +M  AG++P+  T +S+
Sbjct: 121 GSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSV 180

Query: 318 LAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKK 375
           + AC+  GL+  G+    S + +Y           ++DM  + G L  A  +  G+  + 
Sbjct: 181 INACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEV 240

Query: 376 DLVSWNAMLYGLAMHGQ---GEKALGLFSRMKDEGFG 409
           +++ W  +L   + +G+   G++A+ + S ++ E  G
Sbjct: 241 NVIVWRILLGCCSKYGEVEMGKRAIKMISDLERESGG 277



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 120/509 (23%), Positives = 207/509 (40%), Gaps = 56/509 (11%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ +   +V  +  LI    +  L A+A  +F  M   G+     T   ++ A +    
Sbjct: 28  LFDQMPCRNVVSWTGLIDGYTRACLYAEAVALFRHMMAGGISPSEITVLAVVPAISNLGG 87

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM-GERDIVSWNSM 189
             + +M+H    K G   D  V NSLID Y+K G V  SL  K+F  M   R++VSW S+
Sbjct: 88  ILMGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSL--KVFDEMLDRRNLVSWTSI 145

Query: 190 IAGLVKGGELSEARRLFDEM------PER-------DAVS-------------------- 216
           I+G    G   EA  LF EM      P R       +A S                    
Sbjct: 146 ISGFAMHGLSVEALELFAEMRRAGIRPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYN 205

Query: 217 -------WNTILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKL-- 266
                  +  I+D   +AG +  A ++ E +P   N++ W  ++   SK G++EM K   
Sbjct: 206 IDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPVEVNVIVWRILLGCCSKYGEVEMGKRAI 265

Query: 267 -LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +   +  ++   + ++ +   E G   +A +    ++E  +    G  + +  +     
Sbjct: 266 KMISDLERESGGDFAVLSNVLNELGRFSDAEQARKLLDERKIVKVPGLALVVTRSFV--- 322

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYA-KCGSLDNAMSVFNGMTKKDLVSWNAML 384
           ++    K+HA +            + ++  YA +   L  A  VF  +       WN +L
Sbjct: 323 MMEAVKKLHAHLVVSGLHNCQYAMSKVIRSYALQQSDLVFAHKVFEQIESPTTFLWNTLL 382

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            GLA     + A+  + + +++G  PD  TF  VL AC       +G Q  +S     G 
Sbjct: 383 RGLAQSDAPKDAIVFYKKAQEKGMKPDNMTFPFVLKACAKTYAPKEGEQ-MHSHVIKLGF 441

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           L  +     +I L    G L  A  +   M V+ + + W +L+G   + N  +    + +
Sbjct: 442 LLDIFVSNSLIHLYAACGDLVCARSIFDEMLVK-DVVSWNSLIGGYSQRNRFKEVLALFE 500

Query: 505 CLIRLKGSDPGNYTMLSNIFAAT--GDWN 531
            L++ +       TM+  I A T  GDW+
Sbjct: 501 -LMQAEEVQADKVTMVKVISACTHLGDWS 528


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 191/541 (35%), Positives = 297/541 (54%), Gaps = 9/541 (1%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  L  C++L +  QL   +IK  + R+     +LI     C +   +  A  VF  I  
Sbjct: 10  LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P V+++N++IR    +    +A   + +M  KG   D FT+P++LKAC+G         +
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G+  +++V   L+  Y  CG V   L  ++F  + + ++V+W S+I+G V   
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGL--RVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 198 ELSEARRLFDEMPERDAVSWNTIL-DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
             S+A   F EM      +  TI+ D     G     +  F+     N++  ++++  Y+
Sbjct: 188 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPY--FQSKVGFNVILATSLIDMYA 245

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K GD+  A+ LFD MP +TLV W  II+GY++ G A+EA  ++  M + G+ PD  T +S
Sbjct: 246 KCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLS 305

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++ A    G   LG  +HA ++K  F  +  +  ALV+MYAK G  ++A   F  + KKD
Sbjct: 306 VIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAFEDLEKKD 365

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLCACTHAGFIDKGVQYF 435
            ++W  ++ GLA HG G +AL +F RM+++G   PD  T++GVL AC+H G +++G +YF
Sbjct: 366 TIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYF 425

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   +G+ P VEHYGCM+D+L R+GR +EA RLV++MPV+PN  IWG LL  C  H  
Sbjct: 426 AEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNVNIWGALLNGCDIHEN 485

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +EL + +   +   +    G Y +LSNI+A  G W  V  +R  MK  R  K  G SSVE
Sbjct: 486 LELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKVLGHSSVE 545

Query: 556 V 556
            
Sbjct: 546 T 546


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 322/578 (55%), Gaps = 19/578 (3%)

Query: 35  QLFAQIIKLDLQRDP-YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           QL A  ++L L R   + +  L+ +     ++  A KVF+++ + DV  +N ++    +N
Sbjct: 88  QLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRN 147

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN--GKNWFHLVQMIHALIYKCGYFGDIF 151
           +  A+A  +F  M  +GV  D  T   +L  C   G     LV  ++A+  K G   ++F
Sbjct: 148 ARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAV--KHGLDKELF 205

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP- 210
           V N+LID Y K G++    A+ +F  M  RD+V+WNS+I+G  + G+ + A ++F  M  
Sbjct: 206 VCNALIDVYGKLGML--EEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRG 263

Query: 211 ---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDME 262
                D ++  ++    A+ G+   A  L   +  R     +I++ + +V  Y+K  ++E
Sbjct: 264 SGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIE 323

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE-AGLKPDDGTLISILAAC 321
            A+ +FD MP +  V W  +I+GY + G+A EA   Y  M++  GLK   GT +S+L A 
Sbjct: 324 AAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAY 383

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           +  G L  GM++HA   K     +  V   L+D+YAKCG L  AM +F  M ++    WN
Sbjct: 384 SHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWN 443

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++ GL +HG G +AL LFSRM+ EG  PD  TFV +L AC+HAG +D+G  +F  M+  
Sbjct: 444 AIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVT 503

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y I+P  +HY CM D+LGR+G+L EA   +Q+MP++P++ +WG LLGACR H  VE+ + 
Sbjct: 504 YDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKV 563

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L  L   + G Y ++SN++A  G W+ V  VR  +++   QK  G SS+EV   V+
Sbjct: 564 ASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVN 623

Query: 562 EFSVCDQL--HPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            F   +Q   HP+ E+I   + +L   ++ VG+ +  S
Sbjct: 624 VFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYS 661



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 7/119 (5%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q  ++ A  IK+ L  D Y+   LI   A C ++  A+ +F  +       +N +I  
Sbjct: 389 LQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISG 448

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
              +   A+A  +F  MQ++G+  D+ T+  LL AC+       G+++F ++Q+ + ++
Sbjct: 449 LGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIV 507


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 312/571 (54%), Gaps = 53/571 (9%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-RQMGLAIKVFNDIQDPDVHLYNT 85
           CK     KQL A  IK    +DP  A ++I   A   R +  A  VF  + +P+   +NT
Sbjct: 29  CKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNT 88

Query: 86  LIRACVQNS---LNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           ++R   + +   L ++A  +F  M   G V  + FT+P +LKAC   +     + IH LI
Sbjct: 89  ILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLI 148

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D FV ++L+  Y  C V                                 + +
Sbjct: 149 VKFGFHEDEFVISNLVRMYVMCAV---------------------------------MED 175

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A  LF     ++ V +    DG  +        EL ++    N+V W+ M+ G  + GD+
Sbjct: 176 AYSLFC----KNVVDF----DGSCQ-------MELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + AK LFD MP +++V W ++ISGYA+ G   EA  L+ +M+ + + P+  TL+S+L A 
Sbjct: 221 KSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A  G L LG  +H    K + + +  + +ALVDMY+KCGS+D A+ VF  + K++ ++W+
Sbjct: 281 ARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWS 340

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++   AMHG+ E A+  F  M   G  P+   ++G+L AC+HAG +++G  +F  M + 
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P++EHYGCM+DLLGR+G L+EA  L+++MP+EP+ +IW  LLGAC+ H  +++ E 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           V + L+ L   D G+Y  LSN++A+ G+W  VA VRL+MK    +K  G S +E+   +H
Sbjct: 461 VAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIH 520

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EF V D  H K+++I  M+  +   L+  G+
Sbjct: 521 EFLVEDDSHSKAKEIQAMLGEMSMKLRSNGY 551



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 134/355 (37%), Gaps = 62/355 (17%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF-------- 72
           L+   +   L + KQ+   I+K     D ++   L+    +C  M  A  +F        
Sbjct: 129 LKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFD 188

Query: 73  --------NDIQDPDVHLYNTLI---------------------RACV----------QN 93
                      QD +V L+N +I                     R+ V          QN
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQN 248

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  +F +MQ   +  +  T   +L A        L + IH    K     D  + 
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG 308

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           ++L+D YSKCG +  +L  ++F ++ +R+ ++W+++I      G   +A   F  M +  
Sbjct: 309 SALVDMYSKCGSIDEAL--QVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGDMEMA 264
              + V++  IL   + AG +      F  +         I  +  MV    + G +E A
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 265 KLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP-DDGTLISI 317
           + L   MP +   V W  ++         K   R+ + + E  L P D G+ +++
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLME--LAPHDSGSYVAL 479


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 197/588 (33%), Positives = 305/588 (51%), Gaps = 66/588 (11%)

Query: 7   APTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-- 64
           +P   S  +  +  L  L  C  + + KQ  +QII+L L  D     ++I   A+ +   
Sbjct: 10  SPPSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGD 69

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  A++VF+ I  PD ++YNT+ R  ++  L      ++  M  K V  + FTYP L++A
Sbjct: 70  LNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRA 129

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C         + IHA + K G+  D F  N+LI  Y                       V
Sbjct: 130 CCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMY-----------------------V 166

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           ++ S          L +ARR+FD MP+RD VSW +++ GY++ G ++ A E+FE +P RN
Sbjct: 167 NFQS----------LEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
            VSW+ M+  Y +   +  A  LFDRM  + +V                           
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVV--------------------------- 249

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
                D     S+L+AC   G L  G  +H  I K   + ++ +   ++DMY KCG L+ 
Sbjct: 250 ----LDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  VFN + +K + SWN M+ GLAMHG+GE A+ LF  M+ E   PD  TFV VL AC H
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 365

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           +G +++G  YF  M    G+ P +EH+GCM+DLLGR+G L+EA +L+  MPV P+A + G
Sbjct: 366 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 425

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            L+GACR H   EL E++   +I L+  + G Y +L+N++A+ G W  VA VR  M    
Sbjct: 426 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 485

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +K  G S +E ++ V EF    + HP++++IY  ++ + + ++ +G+
Sbjct: 486 VKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGY 533


>gi|414879404|tpg|DAA56535.1| TPA: pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 299/528 (56%), Gaps = 45/528 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI + +   DPD   +  L++     SL  +A  V+     +         P LLKA   
Sbjct: 10  AIYMTSSSHDPDK--WAHLVKEYASQSLVREAALVYARNLPRRTHHQPL-LPVLLKAAAA 66

Query: 128 KN--WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
            +     L + +HA   K  +  D+ V  +++  Y KCG   ++ A++ F  M +R+++S
Sbjct: 67  SSPAELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCG--ALADARRAFDEMPDRNVIS 124

Query: 186 WNSMIAG---------------------------LVKG----GELSEARRLFDEMPE--R 212
           +N+++AG                           L++G    G+++EARR F+  P   R
Sbjct: 125 YNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMR 184

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             V+W  ++ GY  AG+M  A E+F+++P RN   WS+MV GY K GD E A+ +FDR+P
Sbjct: 185 TVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIP 244

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + LV W  +I+GYA+ G +++A   +  M +  +KPD+ T+ S+L+ACA+ G L  G K
Sbjct: 245 TRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKK 304

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           VH  IN+   + N  V N L+DMYAKCG L +A  +F+ M  K+   WN M+  LA HGQ
Sbjct: 305 VHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQ 364

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            ++AL LF +M+  G  P+  T + VL ACTH GF+D+G+Q F  ++  YG+   VEHYG
Sbjct: 365 SDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVEAGVEHYG 423

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-- 510
           C++DLLGR+G+LKEA  +V +M  EPN +IWG+LLGACR H   E++  V + ++RL   
Sbjct: 424 CLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSF 483

Query: 511 --GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
              S+   Y ML+NI AA+  W +   +R +M +   +K  G SS+E+
Sbjct: 484 HASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 199/561 (35%), Positives = 311/561 (55%), Gaps = 12/561 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRAC-VQ 92
           KQ  +  IK  +  D  +   L+     C  +  A + F   +  +V L+N ++ A  + 
Sbjct: 392 KQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLL 451

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
           ++LN ++F++F  MQ +G+  + FTYP +L+ C+      L + IH  + K G+  +++V
Sbjct: 452 DNLN-ESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYV 510

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
            + LID Y+K G +  +L  K+F  + E+D+VSW +MIAG  +  + +EA  LF EM ++
Sbjct: 511 SSVLIDMYAKLGKLDHAL--KIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQ 568

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW--------STMVWGYSKDGDMEMA 264
              S N        A     A    ++I  +  VS         + +V  Y++ G +  A
Sbjct: 569 GIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDA 628

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
              FD++ +K  + W  +ISG+A+ G  +EA  L+ QM +AG + +  T    ++A A  
Sbjct: 629 YFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANV 688

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             + LG ++HA I K      T V N L+ +YAKCG++D+A   F  M +K+ +SWNAML
Sbjct: 689 ANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAML 748

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G + HG G KAL LF  MK  G  P+  TFVGVL AC+H G +D+G++YF SM   +G+
Sbjct: 749 TGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGL 808

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +P+ EHY C++DLLGRSG L  A R V+ MP++P+A++  TLL AC  H  +++ E    
Sbjct: 809 VPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAAS 868

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L+ L+  D   Y +LSN++A TG W      R  MK    +K  G S +EV+N VH F 
Sbjct: 869 HLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFF 928

Query: 565 VCDQLHPKSEQIYQMINTLGK 585
             DQ HP  ++IY+ +  L +
Sbjct: 929 AGDQKHPNVDKIYEYLRDLNE 949



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/495 (26%), Positives = 239/495 (48%), Gaps = 26/495 (5%)

Query: 14  RRLLEEKLQN--------LHKCKN----LNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           RR+L+EK++         L  C       +  +++ A+ I    +   ++   LI     
Sbjct: 158 RRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFK 217

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
              +  A KVF+ +Q  D   +  ++    Q+    +A  +F  M   GV+   + +  +
Sbjct: 218 NGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSV 277

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L AC    ++ + + +H L+ K G+  + +V N+L+  YS+ G      A+++F +M +R
Sbjct: 278 LSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLG--NFIPAEQVFNAMLQR 335

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELF 237
           D VS+NS+I+GL + G   +A  LF +M     + D V+  ++L   +  G + L  + F
Sbjct: 336 DEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGAL-LVGKQF 394

Query: 238 EKIPHRNIVSWSTMVWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
                +  +S   ++ G     Y K  D++ A   F     + +V W +++  Y      
Sbjct: 395 HSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNL 454

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
            E+ +++ QM+  G++P+  T  SIL  C+    + LG ++H  + K  F+ N  V + L
Sbjct: 455 NESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVL 514

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +DMYAK G LD+A+ +F  + +KD+VSW AM+ G A H +  +AL LF  M+D+G   D 
Sbjct: 515 IDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDN 574

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
             F   + AC     +++G Q  ++     G    +     ++ L  R G++++A     
Sbjct: 575 IGFASAISACAGIQALNQG-QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFD 633

Query: 473 SMPVEPNAIIWGTLL 487
            +  + N I W +L+
Sbjct: 634 KIFSKDN-ISWNSLI 647



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 133/467 (28%), Positives = 221/467 (47%), Gaps = 24/467 (5%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+E+GV  ++ TY +LL  C    WF     +H  I K G+  ++ +   L+D Y   G 
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFG- 117

Query: 166 VGVSLAKKLFMSMGERDIVSWNSM----IAGLVKGGELSEARRLFDEMPERDAVSWNTIL 221
             +  A  +F  M  R +  WN +    +AG + G  L   RR+  E  + D  ++  +L
Sbjct: 118 -DLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVL 176

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGDMEMAKLLFDRMPA 273
            G    G  ++ F   EKI  R I           + ++  Y K+G +  AK +FD +  
Sbjct: 177 RG---CGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQK 233

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           +  V W  ++SG ++ G  +EA  L+ QM  +G+ P      S+L+AC +     +G ++
Sbjct: 234 RDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQL 293

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  + K  F   T VCNALV +Y++ G+   A  VFN M ++D VS+N+++ GL+  G  
Sbjct: 294 HGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYS 353

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           +KAL LF +M  +   PD  T   +L AC+  G +  G Q F+S     G+   +   G 
Sbjct: 354 DKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDIILEGA 412

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           ++DL  +   +K A     S   E N ++W  +L A    + +  + ++    ++++G +
Sbjct: 413 LLDLYVKCSDIKTAHEFFLSTETE-NVVLWNVMLVAYGLLDNLNESFKIFT-QMQMEGIE 470

Query: 514 PGNYTMLSNIFAATGDWNKV---ANVRLQMKKTRAQKPSGASSVEVD 557
           P  +T  S I         V     +  Q+ KT  Q     SSV +D
Sbjct: 471 PNQFTYPS-ILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLID 516



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 133/508 (26%), Positives = 240/508 (47%), Gaps = 24/508 (4%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           +L  +I+K+    +  +  +L+        +  A+ VF+++    +  +N ++   V   
Sbjct: 89  KLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGK 148

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYFGDIFVP 153
           +  +   +F  M ++ V  D  TY  +L+ C G +  FH V+ IHA     GY   +FV 
Sbjct: 149 MAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVC 208

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N LID Y K G +    AKK+F  + +RD VSW +M++GL + G   EA  LF +M    
Sbjct: 209 NPLIDLYFKNGFLNS--AKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSG 266

Query: 214 AVS----WNTILDG-----YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
                  ++++L       + K GE      L +       V  + +V  YS+ G+   A
Sbjct: 267 VYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQGFSLETYVC-NALVTLYSRLGNFIPA 325

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +F+ M  +  V +  +ISG +++G + +A  L+ +M    LKPD  T+ S+L+AC+  
Sbjct: 326 EQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSV 385

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
           G L +G + H+   K     +  +  AL+D+Y KC  +  A   F     +++V WN ML
Sbjct: 386 GALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVML 445

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
               +     ++  +F++M+ EG  P+++T+  +L  C+    +D G Q  ++     G 
Sbjct: 446 VAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQ-IHTQVLKTGF 504

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAE 500
              V     +ID+  + G+L  AL++ + +  E + + W  ++    +H     A+ L +
Sbjct: 505 QFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHEKFAEALNLFK 563

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           E+ D     +G    N    S I A  G
Sbjct: 564 EMQD-----QGIHSDNIGFASAISACAG 586



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 104/215 (48%), Gaps = 6/215 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LNQ +Q+ AQ        D  +   L+S  A C ++  A   F+ I   D   +N+LI  
Sbjct: 590 LNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISG 649

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  +F  M + G   ++FT+   + A        L + IHA+I K G+  +
Sbjct: 650 FAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSE 709

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V N LI  Y+KCG   +  A++ F  M E++ +SWN+M+ G  + G   +A  LF++M
Sbjct: 710 TEVSNVLITLYAKCG--NIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDM 767

Query: 210 PE----RDAVSWNTILDGYAKAGEMNLAFELFEKI 240
            +     + V++  +L   +  G ++   + F+ +
Sbjct: 768 KQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSM 802


>gi|225445374|ref|XP_002281645.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Vitis vinifera]
          Length = 858

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 212/643 (32%), Positives = 334/643 (51%), Gaps = 78/643 (12%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K +   ++K+      +++  L+     C  +  A KVF+ + + +V  +N++I   VQN
Sbjct: 202 KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQN 261

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGK------------------ 128
            LN +A  VF DM+ +G+     T    L A         GK                  
Sbjct: 262 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILG 321

Query: 129 ----NWFHLVQMIH--ALIYKCGYFGDIFVPNSLIDSYSKCGVVG--------------- 167
               N++  V +I    L++      D+   N LI SY +   VG               
Sbjct: 322 SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLR 381

Query: 168 ---VSLAKKLFMS-------MG------------ERDIVSWNSMIAGLVKGGELSEARRL 205
              V+L+  L  S       +G            E D+V  NS+I    K   + +AR++
Sbjct: 382 FDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKV 441

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELF-----EKIPHRNIVSWSTMVWGYSKDGD 260
           FD   ERD V WNT+L  YA+ G    A +LF     + +P  N++SW++++ G+ ++G 
Sbjct: 442 FDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVP-PNVISWNSVILGFLRNGQ 500

Query: 261 MEMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           +  AK +F +M +      L+ WT +ISG A+ G   EA   + +M+EAG++P   ++ S
Sbjct: 501 VNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITS 560

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L AC +   L  G  +H  I ++ F  +  V  +LVDMYAKCGS+D A  VF+ M+ K+
Sbjct: 561 VLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKE 620

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L  +NAM+   A+HGQ  +AL LF  ++ EG  PD  TF  +L AC+HAG +++G+  F 
Sbjct: 621 LPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 680

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M   + + P +EHYGC++ LL R G L EALRL+ +MP +P+A I G+LL ACR+H+ +
Sbjct: 681 DMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEI 740

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           EL E +   L +L+ S+ GNY  LSN +AA G W +V+N+R  MK    +K  G S ++ 
Sbjct: 741 ELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQT 800

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
             +++ F   D  HPK+E+IY M+  L  +++ +G+    S E
Sbjct: 801 GGKLNVFVAGDGSHPKTEEIYAMLAMLLSEMRFMGYVPIASNE 843



 Score =  215 bits (548), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 250/487 (51%), Gaps = 20/487 (4%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLD--LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           E LQ     + L+  +Q+ A+I+K      ++ Y+  KL+   A C    +A+++F+ ++
Sbjct: 84  ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 143

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             +V  +  ++    +   +  A   F++MQE GVF DNF  P +LKAC       L + 
Sbjct: 144 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKG 203

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H  + K G+   +FV +SL+D Y KCGV  +  A+K+F SM E+++V+WNSMI G V+ 
Sbjct: 204 VHGYVLKMGFGACVFVSSSLVDMYGKCGV--LEDARKVFDSMVEKNVVTWNSMIVGYVQN 261

Query: 197 GELSEARRLFDEM------PERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           G   EA  +F +M      P R  V    S +  LD   + G+   A  +   +   NI+
Sbjct: 262 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE-GKQGHAIAILNSLDLDNIL 320

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
             S+++  YSK G +E A+L+F RM  K +V W ++IS Y +     +A  +   M    
Sbjct: 321 G-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSEN 379

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           L+ D  TL SIL+A A +  + LG + H    +   + +  V N+++DMYAKC  +D+A 
Sbjct: 380 LRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDAR 439

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VF+  T++DLV WN +L   A  G   +AL LF +M+ +   P+  ++  V+      G
Sbjct: 440 KVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNG 499

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIW 483
            +++    F  M+   G  P +  +  +I  L +SG   EA+   Q M    + P+    
Sbjct: 500 QVNEAKDMFSQMQ-SLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASI 558

Query: 484 GTLLGAC 490
            ++L AC
Sbjct: 559 TSVLLAC 565



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 158/327 (48%), Gaps = 22/327 (6%)

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKI 240
           S+   I+ L K G L E+  L  EM   D       +  +L G      ++   ++  +I
Sbjct: 46  SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 105

Query: 241 PH------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
                   +N    + +V  Y+K    E+A  LF R+  + +  W  I+      G +++
Sbjct: 106 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 165

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A   + +M+E G+ PD+  L ++L AC    L+GLG  VH  + K  F     V ++LVD
Sbjct: 166 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVD 225

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCG L++A  VF+ M +K++V+WN+M+ G   +G  ++A+ +F  M+ EG  P + T
Sbjct: 226 MYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVT 285

Query: 415 FVGVLCACTHAGFIDKGVQ-----YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
               L A  +   + +G Q        S++ D  IL        +I+   + G +++A  
Sbjct: 286 VASFLSASANLDALIEGKQGHAIAILNSLDLD-NILGS-----SIINFYSKVGLIEDA-E 338

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAV 496
           LV S  +E + + W  L+ +  +H+ V
Sbjct: 339 LVFSRMLEKDVVTWNLLISSYVQHHQV 365


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 199/607 (32%), Positives = 316/607 (52%), Gaps = 73/607 (12%)

Query: 31  NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRAC 90
           NQ  Q+  QIIKL       +   L+ S     ++ LA ++F ++ + D   YN +I   
Sbjct: 166 NQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGY 225

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
            ++ L+ +A  +F++MQ  G+    FT+  +L A  G +   L Q IH+ + K  +  ++
Sbjct: 226 SKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNV 285

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           FV N+L+D YSK                        +S+I          +AR+LFDEMP
Sbjct: 286 FVSNALLDFYSK-----------------------HDSVI----------DARKLFDEMP 312

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH-----------------RNIVSW----- 248
           E+D VS+N I+ GYA  G+   AF+LF ++                    N + W     
Sbjct: 313 EQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ 372

Query: 249 -----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                            +++V  Y+K G  E A+++F  +  ++ VPWT +IS Y +KG 
Sbjct: 373 IHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGF 432

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
            +E  +L+++M +A +  D  T  S+L A A    L LG ++H+ I K  F  N    +A
Sbjct: 433 YEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSA 492

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+D+YAKCGS+ +A+  F  M  +++VSWNAM+   A +G+ E  L  F  M   G  PD
Sbjct: 493 LLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPD 552

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             +F+GVL AC+H+G +++G+ +F SM + Y + P+ EHY  ++D+L RSGR  EA +L+
Sbjct: 553 SVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLM 612

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDW 530
             MP++P+ I+W ++L ACR H   ELA    D L  ++   D   Y  +SNI+AA G W
Sbjct: 613 AEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQW 672

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             V+ V   M+    +K    S VE+ +E H FS  D+ HP+ E+I + I+ L K ++ +
Sbjct: 673 ENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEEL 732

Query: 591 GHAAKLS 597
           G+    S
Sbjct: 733 GYKPDTS 739



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 139/510 (27%), Positives = 230/510 (45%), Gaps = 19/510 (3%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           ++ N  K   L+Q +QLF ++      ++      +IS       +G A K+F+ + +  
Sbjct: 58  RVGNFLKNGELSQARQLFEKMP----HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERT 113

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
              +  LI    Q +   +AF +F+ MQ  G   D  T+  LL  CNG    + +  +  
Sbjct: 114 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 173

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            I K GY   + V N+L+DSY  C    + LA +LF  M E D VS+N+MI G  K G  
Sbjct: 174 QIIKLGYDSRLIVGNTLVDSY--CKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLD 231

Query: 200 SEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG- 254
            +A  LF EM          ++  +L       ++ L  ++   +   N V W+  V   
Sbjct: 232 EKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFV-WNVFVSNA 290

Query: 255 ----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
               YSK   +  A+ LFD MP +  V + +IISGYA  G  K A  L+ +++       
Sbjct: 291 LLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRK 350

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
                ++L+  + +    +G ++HA            V N+LVDMYAKCG  + A  +F 
Sbjct: 351 QFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFT 410

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            +T +  V W AM+      G  E+ L LF++M+      D+ TF  +L A      +  
Sbjct: 411 NLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSL 470

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G Q  +S     G +  V     ++D+  + G +K+A++  Q MP + N + W  ++ A 
Sbjct: 471 GKQ-LHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAY 528

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
            ++   E   +    ++ L G  P + + L
Sbjct: 529 AQNGEAEATLKSFKEMV-LSGLQPDSVSFL 557



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 195/403 (48%), Gaps = 53/403 (13%)

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
            ++V  I A I K G+  D    N  + ++ K G   +S A++LF  M  ++ VS N MI
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNG--ELSQARQLFEKMPHKNTVSTNMMI 90

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH-------- 242
           +G VK G L EAR+LFD M ER AV+W  ++ GY++  +   AFELF ++          
Sbjct: 91  SGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYV 150

Query: 243 -------------------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
                                            ++  +T+V  Y K   +++A  LF  M
Sbjct: 151 TFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEM 210

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL--LGL 329
           P    V +  +I+GY++ G+ ++A  L+ +M+ +GLKP + T  ++L  CA  GL  + L
Sbjct: 211 PEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVL 268

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++H+ + K  F  N  V NAL+D Y+K  S+ +A  +F+ M ++D VS+N ++ G A 
Sbjct: 269 GQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAW 328

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS---MERDYGILP 446
            G+ + A  LF  ++   F   ++ F  +L   ++    + G Q          D  IL 
Sbjct: 329 DGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILV 388

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
                  ++D+  + G+ +EA  +  ++    +A+ W  ++ A
Sbjct: 389 G----NSLVDMYAKCGKFEEAEMIFTNL-THRSAVPWTAMISA 426



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/366 (32%), Positives = 174/366 (47%), Gaps = 27/366 (7%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N++ A +VK G        FD    R     N  +  + K GE++ A +LFEK+PH+N V
Sbjct: 37  NNIDARIVKTG--------FDPDTSRS----NFRVGNFLKNGELSQARQLFEKMPHKNTV 84

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           S + M+ GY K G++  A+ LFD M  +T V WTI+I GY++    KEA  L+ QM+  G
Sbjct: 85  STNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCG 144

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            +PD  T +++L+ C    +     +V   I K  +     V N LVD Y K   LD A 
Sbjct: 145 TEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLAC 204

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            +F  M + D VS+NAM+ G +  G  EKA+ LF  M++ G  P ++TF  VLCA     
Sbjct: 205 QLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLD 264

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAII 482
            I  G Q  +S       +  V     ++D   +   + +A +L   MP    V  N II
Sbjct: 265 DIVLG-QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVII 323

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY---TMLSNIFAATGDWNKVANVRLQ 539
            G       K+ A +L  E     ++    D   +   TMLS I + T DW     +  Q
Sbjct: 324 SGYAWDGKHKY-AFDLFRE-----LQFTAFDRKQFPFATMLS-IASNTLDWEMGRQIHAQ 376

Query: 540 MKKTRA 545
              T A
Sbjct: 377 TIVTTA 382


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  347 bits (891), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 295/544 (54%), Gaps = 46/544 (8%)

Query: 83  YNTLIRA---CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           YN  +RA   C    L  +   ++  +  +    D+ T+PFLLKAC      +    +  
Sbjct: 86  YNAALRALSLCTDRGLVTRCLPLYCSLL-RSARPDHLTFPFLLKACARLQERNYGNAVLG 144

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            +   G+  D+FV N+ +   + C    ++ A+KLF     RD+VSWN++I G V+ G  
Sbjct: 145 NVLSLGFHADVFVVNAAMHFLAVCS--SMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVP 202

Query: 200 SEARRLFDEMPERDAVS----------------------------------------WNT 219
            EA  +F  M    AV+                                         N 
Sbjct: 203 REALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHGYVESHGVRCTVRLMNV 262

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++D Y K G++  A  +FE I  + IVSW+TM+ GY++ G M+ A+ +FD MP + + PW
Sbjct: 263 VMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPW 322

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +++GY +    KEA RL+  M+EA ++PDD T++++L+AC++ G L +GM VH  I++
Sbjct: 323 NALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDR 382

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
            R   +  +   LVDMY+KCG+++ A+ VF  + +K+ ++W AM+ GLA HG  + A+  
Sbjct: 383 RRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKY 442

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F RM + G  PD+ TF+GVL AC HAG + +G ++F  M   Y +  +++HY CM+DLLG
Sbjct: 443 FQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLG 502

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G L EA  LV +MP+EP+A++WG L  ACR H  + L E+    L+ L   D G Y +
Sbjct: 503 RAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDSGIYVL 562

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           L+N++A      K   VR+ M+    +K  G S +E++  VHEF V D+ H     IY  
Sbjct: 563 LANMYAEANMRKKADKVRVMMRHLGVEKVPGCSCIELNGVVHEFIVKDKSHTDIAAIYDC 622

Query: 580 INTL 583
           ++ +
Sbjct: 623 LHEI 626



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 190/421 (45%), Gaps = 47/421 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+   + +  N    +   ++ L    D ++    +  LA+C  M  A K+F+     D+
Sbjct: 127 LKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDL 186

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHA 139
             +NTLI   V+  +  +A  +F  M   G  T D  T   ++          L + +H 
Sbjct: 187 VSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSGSAQLRDLELGRRLHG 246

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            +   G    + + N ++D Y KCG   +  AK +F  + ++ IVSW +MI G  + G +
Sbjct: 247 YVESHGVRCTVRLMNVVMDMYIKCG--DLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLM 304

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----------------- 242
            +AR++FDEMPERD   WN ++ GY +      A  LF  +                   
Sbjct: 305 DDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSAC 364

Query: 243 -----------------RNIVSWSTM-----VWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                            R  VS S M     V  YSK G++E A  +F  +P K  + WT
Sbjct: 365 SQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVFKEIPEKNALTWT 424

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA-SINK 339
            +ISG A  G A  A + + +M E GL+PD+ T I +L+AC  +GL+  G +  +  ++K
Sbjct: 425 AMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSK 484

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ---GEK 395
           Y  +      + +VD+  + G LD A  + N M  + D V W A+ +   MHG    GEK
Sbjct: 485 YHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEPDAVVWGALFFACRMHGNITLGEK 544

Query: 396 A 396
           A
Sbjct: 545 A 545



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/267 (27%), Positives = 121/267 (45%), Gaps = 15/267 (5%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           RL+   +    KC +L + K +F  I K  +         +I   A    M  A KVF++
Sbjct: 258 RLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVS----WTTMIVGYAQFGLMDDARKVFDE 313

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + + DV  +N L+   VQ     +A R+F DMQE  V  D+ T   LL AC+      + 
Sbjct: 314 MPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALEMG 373

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             +H  I +      + +  +L+D YSKCG   +  A ++F  + E++ ++W +MI+GL 
Sbjct: 374 MWVHHYIDRRRVSLSVMLGTNLVDMYSKCG--NIEKAIRVFKEIPEKNALTWTAMISGLA 431

Query: 195 KGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNI 245
             G    A + F  M E     D +++  +L     AG +    E F  +       R +
Sbjct: 432 NHGHADVAIKYFQRMIELGLQPDEITFIGVLSACCHAGLVKEGQEFFSLMVSKYHLERKM 491

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             +S MV    + G ++ A+ L + MP
Sbjct: 492 KHYSCMVDLLGRAGYLDEAEHLVNTMP 518


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 196/571 (34%), Positives = 312/571 (54%), Gaps = 53/571 (9%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-RQMGLAIKVFNDIQDPDVHLYNT 85
           CK     KQL A  IK    +DP  A ++I   A   R +  A  VF  + +P+   +NT
Sbjct: 29  CKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNT 88

Query: 86  LIRACVQNS---LNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           ++R   + +   L ++A  +F  M   G V  + FT+P +LKAC   +     + IH LI
Sbjct: 89  ILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLI 148

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D FV ++L+  Y  C V                                 + +
Sbjct: 149 VKFGFHEDEFVISNLVRMYVMCAV---------------------------------MED 175

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           A  LF     ++ V +    DG  +        EL ++    N+V W+ M+ G  + GD+
Sbjct: 176 AYSLFC----KNVVDF----DGSCQ-------MELDKRKQDGNVVLWNIMIDGQVRLGDI 220

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + AK LFD MP +++V W ++ISGYA+ G   EA  L+ +M+ + + P+  TL+S+L A 
Sbjct: 221 KSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAI 280

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A  G L LG  +H    K + + +  + +ALVDMY+KCGS+D A+ VF  + K++ ++W+
Sbjct: 281 ARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWS 340

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++   AMHG+ E A+  F  M   G  P+   ++G+L AC+HAG +++G  +F  M + 
Sbjct: 341 AIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKV 400

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P++EHYGCM+DLLGR+G L+EA  L+++MP+EP+ +IW  LLGAC+ H  +++ E 
Sbjct: 401 VGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGER 460

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           V + L+ L   D G+Y  LSN++A+ G+W  VA VRL+MK    +K  G S +E+   +H
Sbjct: 461 VAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGCSWIEIHGIIH 520

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EF V D  H K+++I  M+  +   L+  G+
Sbjct: 521 EFLVEDDSHSKAKEIQAMLGEMSMKLRSNGY 551



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 74/355 (20%), Positives = 134/355 (37%), Gaps = 62/355 (17%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF-------- 72
           L+   +   L + KQ+   I+K     D ++   L+    +C  M  A  +F        
Sbjct: 129 LKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFD 188

Query: 73  --------NDIQDPDVHLYNTLI---------------------RACV----------QN 93
                      QD +V L+N +I                     R+ V          QN
Sbjct: 189 GSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQN 248

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  +F +MQ   +  +  T   +L A        L + IH    K     D  + 
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           ++L+D YSKCG +  +L  ++F ++ +R+ ++W+++I      G   +A   F  M +  
Sbjct: 309 SALVDMYSKCGSIDKAL--QVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAG 366

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGDMEMA 264
              + V++  IL   + AG +      F  +         I  +  MV    + G +E A
Sbjct: 367 VTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEA 426

Query: 265 KLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP-DDGTLISI 317
           + L   MP +   V W  ++         K   R+ + + E  L P D G+ +++
Sbjct: 427 EELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLME--LAPHDSGSYVAL 479


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  347 bits (890), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 163/384 (42%), Positives = 243/384 (63%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           + D    N+++  Y+  G++  A  +F +I   ++VSW++MV GY K GD+  A+ LFD+
Sbjct: 145 DSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDK 204

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP K LV W+++ISGYA+     +A  LY  ++  G+  ++  ++S++A+CA  G L LG
Sbjct: 205 MPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELG 264

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            + H  I + +   N  +  ALVDMYA+CGS+D A+ VF+ +  +D +SW  ++ G AMH
Sbjct: 265 ERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMH 324

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G  EKAL  FSRM+  G  P + TF  VL AC+H G +++G++ F SM+RDY I P++EH
Sbjct: 325 GYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEH 384

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+DLLGR+G+L EA + V  MP++PNA IWG LLGACR H   E+AE     LI LK
Sbjct: 385 YGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELK 444

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
               G Y +LSNI+A T  W  V N+R  MK+    KP G +  E+D +VH+F++ D+ H
Sbjct: 445 PEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTH 504

Query: 571 PKSEQIYQMINTLGKDLKPVGHAA 594
           P+ +QI +M   +   ++  G+  
Sbjct: 505 PEIQQIERMWEEILGKIRLAGYTG 528



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 209/425 (49%), Gaps = 43/425 (10%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           K  L   KL  L  C  L+  K + A +I+     D + A  LIS       +  A +VF
Sbjct: 11  KLELKNPKLSFLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVF 70

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
             IQ+P++ +YN+ IR    +    ++F  ++  +  G+  DN TYPFL+KAC  K    
Sbjct: 71  YQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLD 130

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           +    H  I + G+  D++V NSL+  YS  G   +  A  +F  +   D+VSW SM+AG
Sbjct: 131 MGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLG--DIKSASYVFRRISCLDVVSWTSMVAG 188

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--------- 243
            +K G+++ AR+LFD+MPE++ V+W+ ++ GYAK    + A EL+  +            
Sbjct: 189 YIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVM 248

Query: 244 ------------------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
                                         N++  + +V  Y++ G ++ A  +FD++P 
Sbjct: 249 VSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPG 308

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           +  + WT +I+G+A  G A++A   + +ME+AGL P + T  ++L+AC+  GL+  G+++
Sbjct: 309 RDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLEL 368

Query: 334 HASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHG 391
             S+ + YR +        +VD+  + G L  A    N M  K +   W A+L    +H 
Sbjct: 369 FESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHK 428

Query: 392 QGEKA 396
             E A
Sbjct: 429 NSEIA 433



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 117/272 (43%), Gaps = 33/272 (12%)

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ A  +F ++    L  +   I G++      ++   Y Q +  GL PD+ T   ++ A
Sbjct: 63  LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C + G L +G++ H  I ++ F  +  V N+LV MY+  G + +A  VF  ++  D+VSW
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSW 182

Query: 381 NAMLYGLAMHGQGEKALGLFSRM-------------------------------KDEGFG 409
            +M+ G    G    A  LF +M                               + EG  
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
            ++   V V+ +C H G ++ G +    + R+   +  +     ++D+  R G + +A+ 
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILG-TALVDMYARCGSIDKAIW 301

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           +   +P   +A+ W TL+     H   E A E
Sbjct: 302 VFDQLPGR-DALSWTTLIAGFAMHGYAEKALE 332



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 80/190 (42%), Gaps = 5/190 (2%)

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S L +C     L +   +HA + +     +    + L+ +      LD A  VF  +  
Sbjct: 19  LSFLESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQN 75

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
            +L  +N+ + G +     +K+   + + K  G  PD  T+  ++ ACT  G +D G+Q 
Sbjct: 76  PNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQA 135

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
              + R +G    V     ++ +    G +K A  + + +    + + W +++    K  
Sbjct: 136 HGQIIR-HGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISC-LDVVSWTSMVAGYIKSG 193

Query: 495 AVELAEEVLD 504
            V  A ++ D
Sbjct: 194 DVTSARKLFD 203


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 297/542 (54%), Gaps = 11/542 (2%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  L  C+++ +  QL   +IK  + R+     +LI     C +   +  A  VF  I  
Sbjct: 9   LSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 68

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P V+++N++IR    +    +A   + +M  KG   D FT+P++LKAC+G         +
Sbjct: 69  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 128

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G+  +++V   L+  Y  CG V   L  ++F  + + ++V+W S+I+G V   
Sbjct: 129 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGL--RVFEDIPKLNVVAWGSLISGFVNNN 186

Query: 198 ELSEARRLFDEMPERDAVSWNTIL-DGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGY 255
             S+A   F EM         TI+ D     G     F+ + +     N++  ++++  Y
Sbjct: 187 RFSDAIEAFREMQSIGVKPNETIMVDLLVACGR---CFDPYCQSKFEFNVILATSLIDMY 243

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K GDM  A+ LFD MP + LV W  II+GY++ G A+EA  ++  M + G+ PD  T  
Sbjct: 244 AKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFF 303

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S++ A    G   LG  +HA ++K  F  +  +  ALV+MYAK G+ ++A  +F  + KK
Sbjct: 304 SVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMFEDLEKK 363

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLCACTHAGFIDKGVQY 434
           D ++W  ++ GLA HG G KAL +F RM++EG   PD  T++GVL AC+H G +++G +Y
Sbjct: 364 DTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRY 423

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M   YG+ P VEHYGCM+D+L R+GR +EA RLV++MPV+P A IWG LL  C  H 
Sbjct: 424 FAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANIWGALLNGCEIHE 483

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            ++LA+ +   +   +    G Y +LSNI+A  G W  V  +R  MK  R  K    SSV
Sbjct: 484 NLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKSKRVDKLLAHSSV 543

Query: 555 EV 556
           E 
Sbjct: 544 ET 545


>gi|195651797|gb|ACG45366.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 544

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/528 (36%), Positives = 299/528 (56%), Gaps = 45/528 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-- 125
           AI + +   DPD   +  L++     SL  +A  V+     +         P LLKA   
Sbjct: 10  AIYMTSSSHDPDK--WAHLVKEYASQSLLREAALVYARNLPRRTHHQPL-LPVLLKAAAA 66

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           +      L + +HA   K  +  D+ V  +++  Y KCG +  + A++ F  M +R+++S
Sbjct: 67  SSPTELGLGKSLHAEALKSAFARDLLVGTTIVSMYCKCGAL--ADARRAFDEMPDRNVIS 124

Query: 186 WNSMIAG---------------------------LVKG----GELSEARRLFDEMPE--R 212
           +N+++AG                           L++G    G+++EARR F+  P   R
Sbjct: 125 YNALLAGYAVAGDMDGALALFGGMRSWTHVTWATLIRGFAEKGDMAEARRWFEATPPGMR 184

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             V+W  ++ GY  AG+M  A E+F+++P RN   WS+MV GY K GD E A+ +FDR+P
Sbjct: 185 TVVTWTVLVQGYVCAGDMETAREVFDRMPARNAFVWSSMVTGYFKAGDAEEARAVFDRIP 244

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + LV W  +I+GYA+ G +++A   +  M +  +KPD+ T+ S+L+ACA+ G L  G K
Sbjct: 245 TRNLVNWNALIAGYAQIGCSEQALEAFHLMLQERVKPDEFTMASLLSACAQLGSLEQGKK 304

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           VH  IN+   + N  V N L+DMYAKCG L +A  +F+ M  K+   WN M+  LA HGQ
Sbjct: 305 VHDFINQEHIRKNHFVMNGLIDMYAKCGDLAHARYIFDSMRWKNNECWNTMISALASHGQ 364

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            ++AL LF +M+  G  P+  T + VL ACTH GF+D+G+Q F  ++  YG+   VEHYG
Sbjct: 365 SDEALHLFFQMERSGRKPNTITVLAVLGACTHGGFVDEGLQIFNKLD-AYGVGAGVEHYG 423

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-- 510
           C++DLLGR+G+LKEA  +V +M  EPN +IWG+LLGACR H   E++  V + ++RL   
Sbjct: 424 CLVDLLGRAGKLKEAYEIVNNMSEEPNEVIWGSLLGACRVHRDAEMSRLVTEEILRLHSF 483

Query: 511 --GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
              S+   Y ML+NI AA+  W +   +R +M +   +K  G SS+E+
Sbjct: 484 HASSNDAEYIMLANIMAASERWEQAEQMRRKMARRGVEKTPGCSSLEL 531


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/587 (33%), Positives = 322/587 (54%), Gaps = 15/587 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQR-DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL 82
           L   +      QL A  ++L L R D + +  L+ +     ++  A + F++++  DV  
Sbjct: 78  LRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPA 137

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N ++    +N+  A+A  +F  M  +GV  D  T   +L  C       L   +H    
Sbjct: 138 WNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAV 197

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G   ++FV N++ID Y K G++     +K+F  M  RD+V+WNS+I+G  +GG+++ A
Sbjct: 198 KHGLDDELFVCNAMIDVYGKLGML--EEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASA 255

Query: 203 RRLF----DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVW 253
             +F    D     D ++  ++    A+ G++     +   +  R     +I++ + +V 
Sbjct: 256 VEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVD 315

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE-AGLKPDDG 312
            Y+K   +E A+ +FD MP +  V W  +I+GY + G+A EA  +YD M++  GLKP  G
Sbjct: 316 MYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQG 375

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T +S+L A +  G L  G ++HA   K     +  V   ++D+YAKCG LD AM +F   
Sbjct: 376 TFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQT 435

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++    WNA++ G+ +HG G KAL LFS+M+ EG  PD  TFV +L AC+HAG +D+G 
Sbjct: 436 PRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGR 495

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
            +F  M+  YGI P  +HY CM+D+ GR+G+L +A   +++MP++P++ IWG LLGACR 
Sbjct: 496 NFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRI 555

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VE+ +     L  L   + G Y ++SN++A  G W+ V  VR  +++   QK  G S
Sbjct: 556 HGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWS 615

Query: 553 SVEVDNEVHEFSVCDQL--HPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           S+EV   V+ F   +Q+  HP+ E+I + +  L   ++ +G+    S
Sbjct: 616 SIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYS 662


>gi|147784564|emb|CAN70487.1| hypothetical protein VITISV_008663 [Vitis vinifera]
          Length = 1302

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/492 (35%), Positives = 277/492 (56%), Gaps = 22/492 (4%)

Query: 77   DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
            D  +  +N +I+  V      QA   +++M+  G   DNFT+P LLKA +  +   +   
Sbjct: 820  DSGLQRWNRVIKRRVSQGNPDQAILAYVEMKRVGFHADNFTFPVLLKAASSLSSCCIGFA 879

Query: 137  IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
            +H    K G+ G  FV  +L+D Y   G   +  A K+F  MG +D+V WNSM+A     
Sbjct: 880  LHGQAMKTGFSGHCFVGTALLDMYXAFG--AIDHATKVFEEMGVKDVVVWNSMLAAYASX 937

Query: 197  GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
            G++  A +LFD MP +D  S+N ++ GYAK G    A  +F++I  ++IVSW++M+   +
Sbjct: 938  GQMDNAMKLFDNMPLKDLASFNIMISGYAKIGRKAAARSIFDRIHAKDIVSWNSMILACT 997

Query: 257  KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
              GDM  A+ LFD MP K                    A  L+D+M+    + D  T+  
Sbjct: 998  NVGDMGNARNLFDVMPKKN-------------------AVDLFDEMKAGNHEADHLTVAL 1038

Query: 317  ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
            +L+ACA  G LG G ++H     +R   + +V  +L+DMYAKCG++  ++ VF     KD
Sbjct: 1039 VLSACAHLGWLGKGTEMHVYAQDHRLASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKD 1098

Query: 377  LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            +  WNA++ GLA+HG G  A+ L  +M+D G  PD+ TF+G+L AC+H   + +G + F 
Sbjct: 1099 IYCWNAIISGLALHGYGHAAVKLLDKMRDNGIRPDEITFIGLLSACSHGSLVQEGCRLFD 1158

Query: 437  SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
             ME+++G+ P++EHYGCM+DLLGR+G L  A +L+++MP EP   I G LLGAC  H  +
Sbjct: 1159 CMEKEFGLPPKLEHYGCMVDLLGRAGFLDPAFQLIKAMPFEPGESILGALLGACVIHQDL 1218

Query: 497  ELAEEVLDCLI-RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            E  E+V+B +  +      G + M  N++A+ G W +    R +M ++   K +G S++E
Sbjct: 1219 ETGEKVIBLITSKAHHVSDGEFMMFVNLYASCGQWKEANRWRERMNESGIAKTAGGSTIE 1278

Query: 556  VDNEVHEFSVCD 567
            VD + + F   D
Sbjct: 1279 VDGKFYRFLAGD 1290



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 45   LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
            L   P++A  LI   A C  +  +++VF   Q  D++ +N +I     +     A ++  
Sbjct: 1064 LASSPHVATSLIDMYAKCGTIQRSLEVFYKSQVKDIYCWNAIISGLALHGYGHAAVKLLD 1123

Query: 105  DMQEKGVFTDNFTYPFLLKACN 126
             M++ G+  D  T+  LL AC+
Sbjct: 1124 KMRDNGIRPDEITFIGLLSACS 1145


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 177/467 (37%), Positives = 269/467 (57%), Gaps = 45/467 (9%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A+KLF  M E + +SWN +++G V+ G +SEAR++FD+MPER+ VSW  ++ GY + G +
Sbjct: 13  ARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLI 72

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK---------------- 274
             A  LF ++P RN+VSW+ M+ G  +DG ++ A+ LFD MP K                
Sbjct: 73  EEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEG 132

Query: 275 ---------------TLVPWTIIISG-------------YAEKGMAKEAARLYDQMEEAG 306
                           +V WT +ISG             Y  KG   EA  L+  M+  G
Sbjct: 133 RLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREG 192

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           ++P   ++IS+L+ C     L  G +VH+ + + +F  +  V + L+ MY KCG L  A 
Sbjct: 193 VRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAK 252

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VF+  + KD+V WN+++ G A HG GEKAL +F  M      PD+ TF+GVL AC++ G
Sbjct: 253 RVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTG 312

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            + +G++ F SM+  Y + P+ EHY CM+DLLGR+G+L EA+ L+++MPVE +AI+WG L
Sbjct: 313 KVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGAL 372

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGACR H  ++LAE     L++L+ ++ G Y +LSN++++   W  V  +R  M+    +
Sbjct: 373 LGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLR 432

Query: 547 KPSGASSVEVDNEVHEFSVCDQL-HPKSEQIYQMINTLGKDLKPVGH 592
           K  G S +EVD +VH FS      HP+ E I + +  LG  L+  G+
Sbjct: 433 KSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGY 479



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 151/327 (46%), Gaps = 54/327 (16%)

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
           +AG  +     EAR+LFD+MPE + +SWN ++ GY + G ++ A ++F+K+P RN+VSW+
Sbjct: 1   MAGYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWT 60

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            M+ GY ++G +E A+LLF RMP + +V WT+++ G  E G   EA +L+D M       
Sbjct: 61  AMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVK---- 116

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
                                  V AS N             ++D     G L  A  +F
Sbjct: 117 ----------------------DVVASTN-------------MIDGLCSEGRLIEAREIF 141

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGE-------------KALGLFSRMKDEGFGPDKYTFV 416
           + M ++++V+W +M+ G    G                +AL LFS M+ EG  P   + +
Sbjct: 142 DEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVI 201

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            VL  C     +D G Q    + R    +  +     +I +  + G L  A R+      
Sbjct: 202 SVLSVCGSLASLDHGRQVHSQLVRSQFDI-DIYVSSVLITMYIKCGDLVTAKRVFDRFSS 260

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVL 503
           + + ++W +++    +H   E A EV 
Sbjct: 261 K-DIVMWNSIIAGYAQHGFGEKALEVF 286



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/211 (23%), Positives = 89/211 (42%), Gaps = 43/211 (20%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  +Q+ +Q+++     D Y++  LI+    C  +  A +VF+     D+ ++N++I 
Sbjct: 212 SLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIA 271

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+    +A  VF DM    +  D  T+  +L AC+                   Y G
Sbjct: 272 GYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACS-------------------YTG 312

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS-----WNSMIAGLVKGGELSEAR 203
            +           K G+       ++F SM  +  V      +  M+  L + G+L+EA 
Sbjct: 313 KV-----------KEGL-------EIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAM 354

Query: 204 RLFDEMP-ERDAVSWNTILDGYAKAGEMNLA 233
            L + MP E DA+ W  +L        ++LA
Sbjct: 355 NLIENMPVEADAIVWGALLGACRTHKNLDLA 385


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 208/652 (31%), Positives = 329/652 (50%), Gaps = 101/652 (15%)

Query: 47  RDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           R+ Y A +LI  S+      +    ++FN I++ +  ++N +IRA +Q +    AF ++ 
Sbjct: 8   RETYAASRLIKFSTHFPFIHIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYK 67

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI-------------- 150
            M    +  DN+TYP L++AC+ +      + +H  + K G+  D+              
Sbjct: 68  SMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCS 127

Query: 151 --------FVPNSLIDSYSKCGVVG----------------------------------- 167
                   F  +S++DS S   ++                                    
Sbjct: 128 NMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGM 187

Query: 168 ---VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF----------DEMPERDA 214
              V  A KLF  M E+D+V+W+++IA   +     EA R F          DE+    A
Sbjct: 188 RGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSA 247

Query: 215 VS-----------------------------WNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           +S                              N ++  Y+K G++ +A +LF++    ++
Sbjct: 248 LSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDL 307

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           +SW++M+ GY K   ++ AK +FD MP K +V W+ +ISGYA+  +  E   L+ +M+ +
Sbjct: 308 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMS 367

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G KPD+ TL+S+++ACA    L  G  VHA I +     N  +   L+DMY KCG ++ A
Sbjct: 368 GFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETA 427

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
           + VF GM +K + +WNA++ GLAM+G  E +L +FS MK     P++ TF+GVL AC H 
Sbjct: 428 LEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHM 487

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +D+G  +FYSM  D+ I P V+HYGCM+DLLGR+G+L+EA  L+  MP+ P+   WG 
Sbjct: 488 GLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGA 547

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGAC+KH   E+   V   LI L+    G + +LSNI+A+ G W+ V  +R  M K R 
Sbjct: 548 LLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRV 607

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            K  G S +E +  +HEF   D+ HP  + I  M+  +   LK  G+   ++
Sbjct: 608 LKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDIN 659



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 147/327 (44%), Gaps = 19/327 (5%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC ++   ++LF +   LDL         +IS    C  +  A  +F+ + + DV  +++
Sbjct: 288 KCGDIMVARKLFDEAYLLDLIS----WNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 343

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN L  +   +F +MQ  G   D  T   ++ AC         + +HA I + G
Sbjct: 344 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 403

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              ++ +  +LID Y KCG V  +L  ++F  M E+ I +WN++I GL   G +  +  +
Sbjct: 404 LTINVILGTTLIDMYMKCGCVETAL--EVFYGMIEKGISTWNALILGLAMNGLVESSLDM 461

Query: 206 FDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYS 256
           F  M +     + +++  +L      G ++     F  + H      N+  +  MV    
Sbjct: 462 FSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLG 521

Query: 257 KDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTL 314
           + G ++ A+ L +RMP    +  W  ++    + G ++   R+  ++ E  L+PD DG  
Sbjct: 522 RAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE--LQPDHDGFH 579

Query: 315 ISILAACAESGLLGLGMKVHASINKYR 341
           + +    A  G     +++   + K+R
Sbjct: 580 VLLSNIYASKGKWDDVLEIRGMMTKHR 606


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 316/572 (55%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + KQL + ++K  +  D  +   L+        +  A+++F+     +V L+N ++ 
Sbjct: 259 DLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLV 318

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q    A++F +F  M   GV  + FTYP +L+ C       L + IH+L  K G+  
Sbjct: 319 AYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQS 378

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D++V   LID YSK G   +  A+++   + E+D+VSW SMIAG V+     EA   F E
Sbjct: 379 DMYVSGVLIDMYSKYG--WLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKE 436

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGD 260
           M        N  L     A     A     +I  R  VS        W+ +V+ Y++ G 
Sbjct: 437 MQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGI 496

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            + A   F+ +  K  + W  +ISG+A+ G+ +EA +++ +M++AG K +  T +S ++A
Sbjct: 497 SKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A    +  G ++HA + K  +   T + NAL+ +Y KCGS+++A   F  MTK++ VSW
Sbjct: 557 SANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSW 616

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N ++   + HG+G +AL LF +MK +G  P   TFVGVL AC+H G +++G+ YF SM  
Sbjct: 617 NTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSN 676

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           ++GI P+ +HY C++D+LGR+G+L  A R V+ MP+  ++++W TLL AC+ H  +E+ E
Sbjct: 677 EHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGE 736

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D  +Y +LSN +A TG W     +R  MK    +K  G S +EV N V
Sbjct: 737 FAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVV 796

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V D+LHP ++QIY  ++ L   L  +G+
Sbjct: 797 HAFFVGDRLHPLADQIYNFLSHLNDRLYKIGY 828



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 241/521 (46%), Gaps = 15/521 (2%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           +L   L    K +     + +  Q+ K     + ++   LIS    CR   LA +VF D+
Sbjct: 145 VLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDM 204

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
              D   +NTLI    Q     +A  +F +MQ  G+  D+ T   LL AC+        +
Sbjct: 205 LYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGK 264

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H+ + K G   D  +  SL+D Y K G +  +L  ++F S    ++V WN M+    +
Sbjct: 265 QLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEAL--QIFDSGDRTNVVLWNLMLVAYGQ 322

Query: 196 GGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
             +L+++  +F  M       +  ++  +L      GE+ L  E    +  +N       
Sbjct: 323 IDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG-EQIHSLTIKNGFQSDMY 381

Query: 252 VWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           V G     YSK G ++ A+ + D +  K +V WT +I+GY +    KEA   + +M+  G
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           + PD+  L S ++ACA    +  G ++HA +    +  + ++ N LV +YA+CG    A 
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAF 501

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           S F  +  K+ ++WN ++ G A  G  E+AL +F +M   G   + +TFV  + A  +  
Sbjct: 502 SSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLA 561

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            I +G Q  ++     G   + E    +I L G+ G +++A      M  + N + W T+
Sbjct: 562 DIKQGKQ-IHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEM-TKRNEVSWNTI 619

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +  C +H     A ++ D  ++ +G  P + T +  + A +
Sbjct: 620 ITCCSQHGRGLEALDLFD-QMKQQGLKPSDVTFVGVLTACS 659



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 134/525 (25%), Positives = 244/525 (46%), Gaps = 25/525 (4%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF ++   D   +  ++    QN L  +A R++ +M   GV    +    +L AC  
Sbjct: 96  ARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTK 155

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
              F L ++IH  +YK G+F + FV N+LI  Y +C      LA ++F  M   D V++N
Sbjct: 156 TELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCR--SFRLADRVFCDMLYCDSVTFN 213

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+G  + G    A  +FDEM       D+V+  ++L   +  G++    +L   +   
Sbjct: 214 TLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKA 273

Query: 244 NI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            +    +   +++  Y K GD+E A  +FD      +V W +++  Y +     ++  ++
Sbjct: 274 GMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIF 333

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M  AG++P+  T   +L  C  +G +GLG ++H+   K  F+ +  V   L+DMY+K 
Sbjct: 334 YRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKY 393

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G LD A  + + + +KD+VSW +M+ G   H   ++AL  F  M+  G  PD       +
Sbjct: 394 GWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAI 453

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC     + +G Q  ++     G    V  +  ++ L  R G  KEA    +++     
Sbjct: 454 SACAGIKAVHQGSQ-IHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIE-HKE 511

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVR 537
            I W  L+    +     L EE L   +++   G+    +T +S+I A+      +A+++
Sbjct: 512 GITWNGLISGFAQSG---LYEEALKVFMKMDQAGAKYNVFTFVSSISASA----NLADIK 564

Query: 538 LQMKKTRAQ--KPSGASSVEVDNE-VHEFSVCDQLHPKSEQIYQM 579
            Q K+  A+  K    S  E+ N  +  +  C  +       ++M
Sbjct: 565 -QGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEM 608



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 202/420 (48%), Gaps = 22/420 (5%)

Query: 122 LKAC--NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           L+AC  +G+ W  LV  IHA    CG  G   + N LID Y+K G V    A+++F  + 
Sbjct: 48  LRACRGSGRRW-PLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFV--RRARRVFEELS 104

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
            RD VSW ++++G  + G   EA RL+ EM     V    +L     A      F+L  +
Sbjct: 105 VRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQL-GR 163

Query: 240 IPHRNIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + H  +            + ++  Y +     +A  +F  M     V +  +ISG+A+ G
Sbjct: 164 LIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCG 223

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
               A  ++D+M+ +GL PD  T+ S+LAAC+  G L  G ++H+ + K     +  +  
Sbjct: 224 HGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEG 283

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+D+Y K G ++ A+ +F+   + ++V WN ML          K+  +F RM   G  P
Sbjct: 284 SLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRP 343

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           +K+T+  +L  CTH G I  G Q  +S+    G    +   G +ID+  + G L +A R+
Sbjct: 344 NKFTYPCMLRTCTHTGEIGLGEQ-IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRI 402

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATG 528
           +  M  E + + W +++    +H   E  +E L+    ++  G  P N  + S I A  G
Sbjct: 403 LD-MIEEKDVVSWTSMIAGYVQH---EFCKEALETFKEMQACGIWPDNIGLASAISACAG 458



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 121/269 (44%), Gaps = 14/269 (5%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K ++Q  Q+ A++       D  I   L+   A C     A   F  I+  +   +N LI
Sbjct: 460 KAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLI 519

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               Q+ L  +A +VF+ M + G   + FT+   + A          + IHA + K GY 
Sbjct: 520 SGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYT 579

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +  + N+LI  Y KCG   +  AK  F  M +R+ VSWN++I    + G   EA  LFD
Sbjct: 580 SETEISNALISLYGKCG--SIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFD 637

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-----SWSTMVWGYSKD 258
           +M ++      V++  +L   +  G +      F+ + + + +      ++ +V    + 
Sbjct: 638 QMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRA 697

Query: 259 GDMEMAKLLFDRM--PAKTLVPWTIIISG 285
           G ++ AK   + M  PA ++V W  ++S 
Sbjct: 698 GQLDRAKRFVEEMPIPADSMV-WRTLLSA 725


>gi|297738890|emb|CBI28135.3| unnamed protein product [Vitis vinifera]
          Length = 1974

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 212/643 (32%), Positives = 334/643 (51%), Gaps = 78/643 (12%)

Query: 34   KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
            K +   ++K+      +++  L+     C  +  A KVF+ + + +V  +N++I   VQN
Sbjct: 1297 KGVHGYVLKMGFGACVFVSSSLVDMYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQN 1356

Query: 94   SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGK------------------ 128
             LN +A  VF DM+ +G+     T    L A         GK                  
Sbjct: 1357 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIEGKQGHAIAILNSLDLDNILG 1416

Query: 129  ----NWFHLVQMIH--ALIYKCGYFGDIFVPNSLIDSYSKCGVVG--------------- 167
                N++  V +I    L++      D+   N LI SY +   VG               
Sbjct: 1417 SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSENLR 1476

Query: 168  ---VSLAKKLFMS-------MG------------ERDIVSWNSMIAGLVKGGELSEARRL 205
               V+L+  L  S       +G            E D+V  NS+I    K   + +AR++
Sbjct: 1477 FDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDARKV 1536

Query: 206  FDEMPERDAVSWNTILDGYAKAGEMNLAFELF-----EKIPHRNIVSWSTMVWGYSKDGD 260
            FD   ERD V WNT+L  YA+ G    A +LF     + +P  N++SW++++ G+ ++G 
Sbjct: 1537 FDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVP-PNVISWNSVILGFLRNGQ 1595

Query: 261  MEMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
            +  AK +F +M +      L+ WT +ISG A+ G   EA   + +M+EAG++P   ++ S
Sbjct: 1596 VNEAKDMFSQMQSLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASITS 1655

Query: 317  ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
            +L AC +   L  G  +H  I ++ F  +  V  +LVDMYAKCGS+D A  VF+ M+ K+
Sbjct: 1656 VLLACTDIPSLWYGRAIHGFITRHEFCLSVPVATSLVDMYAKCGSIDEAKKVFHMMSSKE 1715

Query: 377  LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            L  +NAM+   A+HGQ  +AL LF  ++ EG  PD  TF  +L AC+HAG +++G+  F 
Sbjct: 1716 LPIYNAMISAYALHGQAVEALALFKHLQKEGIEPDSITFTSILSACSHAGLVNEGLNLFA 1775

Query: 437  SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
             M   + + P +EHYGC++ LL R G L EALRL+ +MP +P+A I G+LL ACR+H+ +
Sbjct: 1776 DMVSKHNMNPIMEHYGCVVSLLSRCGNLDEALRLILTMPFQPDAHILGSLLTACREHHEI 1835

Query: 497  ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
            EL E +   L +L+ S+ GNY  LSN +AA G W +V+N+R  MK    +K  G S ++ 
Sbjct: 1836 ELGEYLSKHLFKLEPSNSGNYVALSNAYAAAGRWVEVSNMRDLMKVRGLRKNPGCSWIQT 1895

Query: 557  DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
              +++ F   D  HPK+E+IY M+  L  +++ +G+    S E
Sbjct: 1896 GGKLNVFVAGDGSHPKTEEIYAMLAMLLSEMRFMGYVPIASNE 1938



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 250/487 (51%), Gaps = 20/487 (4%)

Query: 19   EKLQNLHKCKNLNQTKQLFAQIIKLD--LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
            E LQ     + L+  +Q+ A+I+K      ++ Y+  KL+   A C    +A+++F+ ++
Sbjct: 1179 ELLQGCVYERALHTGQQIHARILKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLR 1238

Query: 77   DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
              +V  +  ++    +   +  A   F++MQE GVF DNF  P +LKAC       L + 
Sbjct: 1239 VRNVFSWAAIVGLQCRMGFSEDALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKG 1298

Query: 137  IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
            +H  + K G+   +FV +SL+D Y KCGV  +  A+K+F SM E+++V+WNSMI G V+ 
Sbjct: 1299 VHGYVLKMGFGACVFVSSSLVDMYGKCGV--LEDARKVFDSMVEKNVVTWNSMIVGYVQN 1356

Query: 197  GELSEARRLFDEM------PERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
            G   EA  +F +M      P R  V    S +  LD   + G+   A  +   +   NI+
Sbjct: 1357 GLNQEAIDVFYDMRVEGIEPTRVTVASFLSASANLDALIE-GKQGHAIAILNSLDLDNIL 1415

Query: 247  SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
              S+++  YSK G +E A+L+F RM  K +V W ++IS Y +     +A  +   M    
Sbjct: 1416 G-SSIINFYSKVGLIEDAELVFSRMLEKDVVTWNLLISSYVQHHQVGKALNMCHLMRSEN 1474

Query: 307  LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            L+ D  TL SIL+A A +  + LG + H    +   + +  V N+++DMYAKC  +D+A 
Sbjct: 1475 LRFDSVTLSSILSASAVTSNIKLGKEGHCYCIRRNLESDVVVANSIIDMYAKCERIDDAR 1534

Query: 367  SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
             VF+  T++DLV WN +L   A  G   +AL LF +M+ +   P+  ++  V+      G
Sbjct: 1535 KVFDSTTERDLVLWNTLLAAYAQVGLSGEALKLFYQMQFDSVPPNVISWNSVILGFLRNG 1594

Query: 427  FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIW 483
             +++    F  M+   G  P +  +  +I  L +SG   EA+   Q M    + P+    
Sbjct: 1595 QVNEAKDMFSQMQ-SLGFQPNLITWTTLISGLAQSGFGYEAILFFQKMQEAGIRPSIASI 1653

Query: 484  GTLLGAC 490
             ++L AC
Sbjct: 1654 TSVLLAC 1660



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/327 (27%), Positives = 158/327 (48%), Gaps = 22/327 (6%)

Query: 185  SWNSMIAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKI 240
            S+   I+ L K G L E+  L  EM   D       +  +L G      ++   ++  +I
Sbjct: 1141 SYFHHISSLCKDGHLQESVHLLSEMEFEDFQIGPEIYGELLQGCVYERALHTGQQIHARI 1200

Query: 241  PH------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
                    +N    + +V  Y+K    E+A  LF R+  + +  W  I+      G +++
Sbjct: 1201 LKNGDFFAKNEYVETKLVVFYAKCDFPEVAVRLFHRLRVRNVFSWAAIVGLQCRMGFSED 1260

Query: 295  AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
            A   + +M+E G+ PD+  L ++L AC    L+GLG  VH  + K  F     V ++LVD
Sbjct: 1261 ALLGFIEMQENGVFPDNFVLPNVLKACGSLQLIGLGKGVHGYVLKMGFGACVFVSSSLVD 1320

Query: 355  MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            MY KCG L++A  VF+ M +K++V+WN+M+ G   +G  ++A+ +F  M+ EG  P + T
Sbjct: 1321 MYGKCGVLEDARKVFDSMVEKNVVTWNSMIVGYVQNGLNQEAIDVFYDMRVEGIEPTRVT 1380

Query: 415  FVGVLCACTHAGFIDKGVQ-----YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
                L A  +   + +G Q        S++ D  IL        +I+   + G +++A  
Sbjct: 1381 VASFLSASANLDALIEGKQGHAIAILNSLDLD-NILGS-----SIINFYSKVGLIEDA-E 1433

Query: 470  LVQSMPVEPNAIIWGTLLGACRKHNAV 496
            LV S  +E + + W  L+ +  +H+ V
Sbjct: 1434 LVFSRMLEKDVVTWNLLISSYVQHHQV 1460


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 205/584 (35%), Positives = 315/584 (53%), Gaps = 12/584 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +L   K++   + K+  + D ++A  L+   +    + +A KVF D+   DV  +
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSW 190

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    QN   A A  V   M+ +GV  D  T   +L  C   +      +IH  + K
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK 250

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+FV N+LI+ YSK G   +  A+ +F  M  RD+VSWNS+IA   +  + S A 
Sbjct: 251 HGLDSDVFVSNALINMYSKFG--RLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 204 RLFDEM------PER-DAVSWNTILDGYA--KAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           R F  M      P+    VS  +I    +  +     L F +  +   +++V  + +V  
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNM 368

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA-GLKPDDGT 313
           Y+K G M  A  +FD++P K  + W  +++GY + G+A EA   Y+ MEE     P+ GT
Sbjct: 369 YAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGT 428

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +SI+ A +  G L  GMK+HA + K     +  V   L+D+Y KCG L++AMS+F  + 
Sbjct: 429 WVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP 488

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           +   V WNA++  L +HG+GE+AL LF  M  E    D  TFV +L AC+H+G +D+G +
Sbjct: 489 RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQK 548

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F  M+++YGI P ++HYGCM+DLLGR+G L++A  LV++MP++P+A IWG LL AC+ +
Sbjct: 549 CFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIY 608

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
              EL     D L+ +   + G Y +LSNI+A T  W  V  VR   +    +K  G SS
Sbjct: 609 GNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSS 668

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           V V ++   F   +Q HPK  +IY+ +  L   +K +G+    S
Sbjct: 669 VVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYS 712



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/545 (25%), Positives = 274/545 (50%), Gaps = 30/545 (5%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            + C N+N TK+L A ++     ++  ++ KLI+       + L+   F+ I   ++  +
Sbjct: 29  FNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSW 88

Query: 84  NTLIRACVQNSLNAQAF----RVFLDMQEKGVFTDNFTYPFLLKAC----NGKNWFHLVQ 135
           N++I A V+     +A     ++F       +  D +T+P +LKAC    +GK       
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKK------ 142

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H  ++K G+  D+FV  SL+  YS+ GV+ V  A K+F+ M  +D+ SWN+MI+G  +
Sbjct: 143 -VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDV--AHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 196 GGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGE-MNLAFELFEKIPH---RNIVS 247
            G  + A  + + M     + D ++  +IL   A++ + +N        + H    ++  
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + ++  YSK G ++ A+++FD+M  + LV W  II+ Y +      A R +  M+  G+
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           +PD  T++S+ +  ++     +   +    I +     +  + NALV+MYAK G ++ A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHA 425
           +VF+ + +KD +SWN ++ G   +G   +A+  ++ M++     P++ T+V ++ A +H 
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G + +G++    + ++  +   V    C+IDL G+ GRL++A+ L   +P +  ++ W  
Sbjct: 440 GALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRD-TSVPWNA 497

Query: 486 LLGACRKHNAVELAEEVL-DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
           ++ +   H   E A ++  D L     +D   +  L +  + +G  ++       M+K  
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEY 557

Query: 545 AQKPS 549
             KPS
Sbjct: 558 GIKPS 562


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 310/577 (53%), Gaps = 14/577 (2%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L +    K +   +IK     D  +    +   A C     AIK+F+++ + DV
Sbjct: 305 LKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDV 364

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N +I    Q+    +A  +F +M+  G   D+ T   ++ +C         + IH  
Sbjct: 365 ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHME 424

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G+  D FV ++L+D Y KCG +   +AK++F  +  +++VSWNSMIAG    G+  
Sbjct: 425 LVRSGFALDGFVSSALVDMYGKCGCL--EMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSK 482

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMV 252
               LF  M E       T L     A   ++  +L + I           +I   S+++
Sbjct: 483 SCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLI 542

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G++  A+ +F  MP   +V W ++ISGY + G   EA  ++  M +AG+KPD  
Sbjct: 543 DLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAI 602

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T  S+L AC++  +L  G ++H  I + + + N  V  AL+DMYAKCG++D A+ +FN +
Sbjct: 603 TFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL 662

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++D VSW +M+     HGQ  +AL LF +M+     PDK TF+ +L AC+HAG +D+G 
Sbjct: 663 PERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGC 722

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-VEPNAIIWGTLLGACR 491
            YF  M  +YG  P VEHY C+IDLLGR GRL+EA  ++Q  P +  +  +  TL  AC 
Sbjct: 723 YYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACH 782

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  ++L E++   LI     DP  Y +LSN++A+   W++V  VRL++K+   +K  G 
Sbjct: 783 LHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGC 842

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           S +EV   +H F V D+ HP+++ IY+ ++ L   ++
Sbjct: 843 SWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVE 879



 Score =  224 bits (572), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 159/538 (29%), Positives = 259/538 (48%), Gaps = 83/538 (15%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-DVHLYNTLIRACVQ 92
           K +  +I+ L LQ +  +   LI+    C     A  VF  I++P D+ L+N L+ AC +
Sbjct: 215 KLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTK 274

Query: 93  NSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           N +  +   VF  +        D FTYP +LKAC+G       +M+H  + K G+  D+ 
Sbjct: 275 NFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVV 334

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP- 210
           V +S +  Y+KC V   ++  KLF  M ERD+ SWN++I+   + G+  +A  LF+EM  
Sbjct: 335 VMSSAVGMYAKCNVFEDAI--KLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 211 ---ERDAVSWNTIL-----------------------------------DGYAKAGEMNL 232
              + D+V+  T++                                   D Y K G + +
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A E+FE+I  +N+VSW++M+ GYS  GD                               +
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGD-------------------------------S 481

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           K    L+ +M+E G++P   TL SIL AC+ S  L LG  +H  I + R + +  V ++L
Sbjct: 482 KSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSL 541

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +D+Y KCG++ +A +VF  M K ++VSWN M+ G    G   +AL +F+ M+  G  PD 
Sbjct: 542 IDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDA 601

Query: 413 YTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
            TF  VL AC+    ++KG + + + +E    I   V   G ++D+  + G + EAL + 
Sbjct: 602 ITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVDEALHIF 659

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFAAT 527
             +P E + + W +++ A   H     A E L    +++ SD  P   T L+ + A +
Sbjct: 660 NQLP-ERDFVSWTSMIAAYGSHGQ---AFEALKLFEKMQQSDAKPDKVTFLAILSACS 713



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/426 (28%), Positives = 201/426 (47%), Gaps = 55/426 (12%)

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM-GERDIVSWNSMIA 191
           L ++IH  I   G   +I +  SLI+ Y  C +     AK +F ++    DI  WN ++A
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHL--FQSAKLVFQTIENPLDITLWNGLMA 270

Query: 192 GLVKGGELSEARRLFDEM---P--ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--- 243
              K     E   +F  +   P  + DA ++ ++L   +  G +      + K+ H    
Sbjct: 271 ACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVG-----YGKMVHTHVI 325

Query: 244 ------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                 ++V  S+ V  Y+K    E A  LFD MP + +  W  +IS Y + G  ++A  
Sbjct: 326 KSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALE 385

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+++M+ +G KPD  TL +++++CA    L  G ++H  + +  F  +  V +ALVDMY 
Sbjct: 386 LFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYG 445

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCG L+ A  VF  + +K++VSWN+M+ G ++ G  +  + LF RM +EG  P   T   
Sbjct: 446 KCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSS 505

Query: 418 VLCACT-----------HAGFIDKGVQ------------YFY-----SMERDYGILPQ-- 447
           +L AC+           H   I   V+            YF      S E  +  +P+  
Sbjct: 506 ILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTN 565

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           V  +  MI    + G   EAL +   M    V+P+AI + ++L AC +   +E  +E+ +
Sbjct: 566 VVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHN 625

Query: 505 CLIRLK 510
            +I  K
Sbjct: 626 FIIESK 631



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 125/265 (47%), Gaps = 13/265 (4%)

Query: 235 ELFEKIPHRNIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWTIIIS 284
           EL  K+ H+ IVS           +++  Y      + AKL+F  +     +  W  +++
Sbjct: 211 ELLGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMA 270

Query: 285 GYAEKGMAKEAARLYDQMEE-AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
              +  +  E   ++ ++     LKPD  T  S+L AC+  G +G G  VH  + K  F 
Sbjct: 271 ACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFA 330

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  V ++ V MYAKC   ++A+ +F+ M ++D+ SWN ++      GQ EKAL LF  M
Sbjct: 331 MDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEM 390

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           K  GF PD  T   V+ +C     +++G +    + R  G          ++D+ G+ G 
Sbjct: 391 KVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRS-GFALDGFVSSALVDMYGKCGC 449

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLG 488
           L+ A  + + +    N + W +++ 
Sbjct: 450 LEMAKEVFEQIQ-RKNVVSWNSMIA 473


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 197/632 (31%), Positives = 328/632 (51%), Gaps = 50/632 (7%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S++ L     + L       Q  +L + II L L      + KLI+  A  R    +  V
Sbjct: 11  SRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSV 70

Query: 72  FNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           F  +  P  +V+L+N++IRA   N L ++A  ++ + Q   +  D +T+P ++ AC G  
Sbjct: 71  FR-LASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLL 129

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
            F + + IH  +   G+  D+++ N+LID Y  C    +  A+K+F  M  RD+VSWNS+
Sbjct: 130 DFEMAKSIHDRVLDMGFGSDLYIGNALIDMY--CRFNDLDKARKVFEEMPLRDVVSWNSL 187

Query: 190 IAGLVKGGELSEAR-------RLFDEMP-------------------------------- 210
           I+G    G  +EA        +LF EM                                 
Sbjct: 188 ISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDY 247

Query: 211 ------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
                 E D  + N +++ YAK G +  + E+F  +  ++ VSW++M+  Y ++G M  +
Sbjct: 248 MITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDS 307

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F+ M A+ ++ W  II+            R+  +M   G+ PD  T++SIL  C+  
Sbjct: 308 LKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLL 367

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
                G ++H  I K   + +  V N L++MY+KCGSL N+  VF  M  KD+V+W A++
Sbjct: 368 AAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALI 427

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
               M+G+G+KA+  F  M+  G  PD   FV ++ AC+H+G +++G+ YF+ M++DY I
Sbjct: 428 SACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKI 487

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P++EHY C++DLL RS  L +A   + SMP++P++ IWG LL ACR     E+AE V +
Sbjct: 488 EPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSE 547

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            +I L   D G Y ++SNI+AA G W++V ++R  +K    +K  G S +E+ N+V+ F 
Sbjct: 548 RIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFG 607

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
              +   + E++ +++  L   +   G+ A L
Sbjct: 608 TGTKFFEQFEEVNKLLGMLAGLMAKEGYIANL 639


>gi|359480506|ref|XP_003632478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 590

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 306/545 (56%), Gaps = 12/545 (2%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
            +Q     IKL   +D Y     I +LA    +G A ++F+++   D   +N++I    +
Sbjct: 31  NRQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQLFDEMPHRDTVSWNSIITGYWK 90

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIF 151
           N    ++ R+F  M  K V + N     ++  C   +      Q   A+  +     +  
Sbjct: 91  NGCFDESKRLFGLMPTKNVVSWNS----MIAGCIEDERIDEAWQYFQAMPQR-----NTA 141

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
             N++I    +     V  A +LF  M  R+++S+ +M+ G  K GE+ +AR LF+ MP+
Sbjct: 142 SWNAMISGLVRYD--RVEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQ 199

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           ++ VSW  ++ GY + G+ + A  LFE++P +NIV+ + M+ GY K+G  + AK+LFD++
Sbjct: 200 KNVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQI 259

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P + L  W  +I+GYA+ G  +EA +L+ QM + G++PD  TLIS+L AC+    L  G 
Sbjct: 260 PCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGR 319

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           K H  + K  ++   ++CNAL+ MY KCGS+ ++   F  +   D+VSWNAM+   A HG
Sbjct: 320 KTHVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHG 379

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
             ++AL  F  M+     PD  TF+ +L AC HAG + + + +F SM   Y I+P+ EH+
Sbjct: 380 FYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHF 439

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            C++D+L R G++++A +++Q MP E +  IWG LL AC  H  V+L E     ++ L+ 
Sbjct: 440 ACLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEP 499

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
            + G Y +LSNI+AA G W +V  VR  M++   +K    S +E+DN+VH F   D  HP
Sbjct: 500 QNSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHP 559

Query: 572 KSEQI 576
           +  +I
Sbjct: 560 EIHRI 564


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 205/584 (35%), Positives = 315/584 (53%), Gaps = 12/584 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +L   K++   + K+  + D ++A  L+   +    + +A KVF D+   DV  +
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSW 190

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    QN   A A  V   M+ +GV  D  T   +L  C   +      +IH  + K
Sbjct: 191 NAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK 250

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+FV N+LI+ YSK G   +  A+ +F  M  RD+VSWNS+IA   +  + S A 
Sbjct: 251 HGLDSDVFVSNALINMYSKFG--RLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTAL 308

Query: 204 RLFDEM------PER-DAVSWNTILDGYA--KAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           R F  M      P+    VS  +I    +  +     L F +  +   +++V  + +V  
Sbjct: 309 RFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNM 368

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA-GLKPDDGT 313
           Y+K G M  A  +FD++P K  + W  +++GY + G+A EA   Y+ MEE     P+ GT
Sbjct: 369 YAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGT 428

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +SI+ A +  G L  GMK+HA + K     +  V   L+D+Y KCG L++AMS+F  + 
Sbjct: 429 WVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP 488

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           +   V WNA++  L +HG+GE+AL LF  M  E    D  TFV +L AC+H+G +D+G +
Sbjct: 489 RDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQK 548

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F  M+++YGI P ++HYGCM+DLLGR+G L++A  LV++MP++P+A IWG LL AC+ +
Sbjct: 549 CFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIY 608

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
              EL     D L+ +   + G Y +LSNI+A T  W  V  VR   +    +K  G SS
Sbjct: 609 GNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSS 668

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           V V ++   F   +Q HPK  +IY+ +  L   +K +G+    S
Sbjct: 669 VVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYS 712



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 138/545 (25%), Positives = 274/545 (50%), Gaps = 30/545 (5%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            + C N+N TK+L A ++     ++  ++ KLI+       + L+   F+ I   ++  +
Sbjct: 29  FNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSW 88

Query: 84  NTLIRACVQNSLNAQAF----RVFLDMQEKGVFTDNFTYPFLLKAC----NGKNWFHLVQ 135
           N++I A V+     +A     ++F       +  D +T+P +LKAC    +GK       
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKK------ 142

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H  ++K G+  D+FV  SL+  YS+ GV+ V  A K+F+ M  +D+ SWN+MI+G  +
Sbjct: 143 -VHCCVFKMGFEDDVFVAASLVHLYSRYGVLDV--AHKVFVDMPVKDVGSWNAMISGFCQ 199

Query: 196 GGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGE-MNLAFELFEKIPH---RNIVS 247
            G  + A  + + M     + D ++  +IL   A++ + +N        + H    ++  
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + ++  YSK G ++ A+++FD+M  + LV W  II+ Y +      A R +  M+  G+
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           +PD  T++S+ +  ++     +   +    I +     +  + NALV+MYAK G ++ A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHA 425
           +VF+ + +KD +SWN ++ G   +G   +A+  ++ M++     P++ T+V ++ A +H 
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G + +G++    + ++  +   V    C+IDL G+ GRL++A+ L   +P +  ++ W  
Sbjct: 440 GALQQGMKIHAKLIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRD-TSVPWNA 497

Query: 486 LLGACRKHNAVELAEEVL-DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
           ++ +   H   E A ++  D L     +D   +  L +  + +G  ++       M+K  
Sbjct: 498 IIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEY 557

Query: 545 AQKPS 549
             KPS
Sbjct: 558 GIKPS 562


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 195/552 (35%), Positives = 304/552 (55%), Gaps = 10/552 (1%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D ++   +++      ++  A KVF+ + + D  L+NT++   V+NS   +A  +F DM 
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMV 199

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           + G+  D+ T   +L          L   I  L  K G+    +V   L   YSKCG   
Sbjct: 200 KGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCG--E 257

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDG 223
           +  A+ LF  +G+ D+VS+N+MI+G     E   + RLF E+     + ++ S   ++  
Sbjct: 258 IETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPV 317

Query: 224 YAKAGEMNLAFELF----EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           +   G ++L   +     +     N    + +   YS+  ++E A+LLFD    K+L  W
Sbjct: 318 FFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASW 377

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +ISGYA+ G+ ++A  L+ +M++  ++P+  T+ SIL+ACA+ G L LG  VH  IN+
Sbjct: 378 NAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINR 437

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
             F+ N  V  AL+DMYAKCGS+  A  +F+ M +K+ V+WNAM+ G  +HG G +AL L
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNL 497

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F+ M      P   TF+ VL AC+HAG + +G + F SM  D+G  P  EHY CM+DLLG
Sbjct: 498 FNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLG 557

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G L +AL  ++ MPVEP   +WG LLGAC  H    LA    D L  L   + G Y +
Sbjct: 558 RAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVL 617

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSNI++A  ++ + A+VR  +K+ +  K  G + +EV N +H F+  DQ HP++  IY M
Sbjct: 618 LSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAM 677

Query: 580 INTLGKDLKPVG 591
           +  L   ++  G
Sbjct: 678 LEKLTGKMREAG 689



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 148/529 (27%), Positives = 252/529 (47%), Gaps = 28/529 (5%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S R L    L  +++   L+Q  Q  AQII   L  D     KL   L+  + +  A  +
Sbjct: 8   STRNLF---LTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLL 64

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNW 130
           F+ I +PD+ LYN LIRA   N+  + A  ++  +++      DNFTY F++   +    
Sbjct: 65  FSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGL 124

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             L+     +    G+  D+FV ++++  Y K   V    A+K+F  M ERD V WN+M+
Sbjct: 125 GLLLHAHSIV---AGFGSDLFVGSAIVACYFKFSRVAA--ARKVFDGMLERDTVLWNTMV 179

Query: 191 AGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE---LFEKIP-H 242
           +GLVK     EA  +F +M +     D+ +   +L G A+  ++ L      L  K+  H
Sbjct: 180 SGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFH 239

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
            +    + +   YSK G++E A+LLF ++    LV +  +ISGY      + + RL+ ++
Sbjct: 240 SHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKEL 299

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
             +G K +  +++ ++      G L L   +H    K     N++V  AL  +Y++   +
Sbjct: 300 LVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEI 359

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           ++A  +F+  ++K L SWNAM+ G A +G  EKA+ LF  M+     P+  T   +L AC
Sbjct: 360 ESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSAC 419

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
              G +  G ++ + +         +     +ID+  + G + EA RL   MP E NA+ 
Sbjct: 420 AQLGALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVT 477

Query: 483 WGTLLGAC----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           W  ++         H A+ L  E+L   +      P   T LS ++A +
Sbjct: 478 WNAMISGYGLHGYGHEALNLFNEMLHSRV-----SPTGVTFLSVLYACS 521


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 309/573 (53%), Gaps = 11/573 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   KQ+   +++    +   +A   I+       +  A ++F  +++ D+  +NT+I 
Sbjct: 312 HLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVIS 371

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV-QMIHALIYKCGYF 147
            C ++ L   + R+F+D+   G+  D FT   +L+AC+     + V + +H    K G  
Sbjct: 372 GCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIV 431

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D FV  +LID YSK G   +  A+ LF +    D+ SWN+M+ G        EA RLF 
Sbjct: 432 LDSFVSTALIDVYSKGG--KMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFS 489

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMVWGYSKDG 259
            M ER   +        AKA    +  +  ++I         H ++   S ++  Y K G
Sbjct: 490 LMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCG 549

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           +M+ A+ +F+++P+   V WT +ISG  E G  ++A   Y QM  AG++PD+ T  +++ 
Sbjct: 550 EMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVK 609

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC+    L  G ++HA+I K     +  V  +LVDMYAKCG++++A  +F  M  + +  
Sbjct: 610 ACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVAL 669

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNAM+ GLA HG  E+AL  F+ MK  G  PD+ TF+GVL AC+H+G      + F SM+
Sbjct: 670 WNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQ 729

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           + YG+ P++EHY C++D L R+G ++EA ++V SMP E +A ++ TLL ACR     E  
Sbjct: 730 KTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETG 789

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E V + L  +  SD   Y +LSNI+AA   W    + R  MK+   +K  G S +++ N+
Sbjct: 790 ERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNK 849

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           VH F   D+ H +++ IY  +  + K +K  G+
Sbjct: 850 VHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGY 882



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 131/473 (27%), Positives = 223/473 (47%), Gaps = 22/473 (4%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F    D DV ++N  + + +Q     +A   F DM +  V  D+ TY  +L     
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            N   L + IH  + + G+   + V NS I+ Y K G   V+ A+++F  M E D++SWN
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAG--SVNYARRMFGQMKEVDLISWN 367

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAK------AGEMNLAFELF 237
           ++I+G  + G    + RLF ++       D  +  ++L   +        G       L 
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALK 427

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
             I   + VS + ++  YSK G ME A+LLF       L  W  ++ G+      +EA R
Sbjct: 428 AGIVLDSFVS-TALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+  M E G K D  T  +   A      L  G ++HA + K RF  +  V + ++DMY 
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYL 546

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCG + +A  VFN +   D V+W  ++ G   +G+ E+AL  + +M+  G  PD+YTF  
Sbjct: 547 KCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFAT 606

Query: 418 VLCACTHAGFIDKGVQYFYS-MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           ++ AC+    +++G Q   + M+ +    P V     ++D+  + G +++A  L + M  
Sbjct: 607 LVKACSLLTALEQGKQIHANIMKLNCAFDPFV--MTSLVDMYAKCGNIEDAYGLFRRMNT 664

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCL--IRLKGSDPGNYTMLSNIFAAT 527
              A +W  ++    +H     AEE L+    ++ +G  P   T +  + A +
Sbjct: 665 RSVA-LWNAMIVGLAQHGN---AEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 205/485 (42%), Gaps = 70/485 (14%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           P WFS   +L   + +     +L   K+  A I+   L  D Y+   LI+  A C  +  
Sbjct: 14  PQWFS---ILRHAIAD----SDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFS 66

Query: 68  AIKVFNDI--QDPDVHLYNTLIRACVQN------SLNAQAFRVFLDMQEKGVFTDNFTYP 119
           A K+F+     D D+  YN ++ A              +AF +F  +++  + T   T  
Sbjct: 67  ARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLS 126

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            L K C         + +     K G   D+FV  +L++ Y+K     +  A+ LF  M 
Sbjct: 127 PLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAK--FQRIREARVLFDRMP 184

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE 235
            RD+V WN M+   V+ G   E   LF          D VS  TIL G  K         
Sbjct: 185 VRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKK-------T 237

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           +FE+     + +++T ++    D D+ +               W   +S Y + G   EA
Sbjct: 238 VFER-ELEQVRAYATKLFVCDDDSDVTV---------------WNKTLSSYLQAGEGWEA 281

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
              +  M ++ +  D  T I IL+  A    L LG ++H ++ ++ +    +V N+ ++M
Sbjct: 282 VDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINM 341

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y K GS++ A  +F  M + DL+SWN ++ G A  G  E +L LF  +   G  PD++T 
Sbjct: 342 YVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTI 401

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-------------CMIDLLGRSG 462
             VL AC+             S+E  Y +  QV                  +ID+  + G
Sbjct: 402 TSVLRACS-------------SLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGG 448

Query: 463 RLKEA 467
           +++EA
Sbjct: 449 KMEEA 453



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN--GMTKKDL 377
           A A+S L+ LG + HA I       +  V N L+ MYAKCGSL +A  +F+    + +DL
Sbjct: 23  AIADSDLI-LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDL 81

Query: 378 VSWNAMLYGLAMHGQ------GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           V++NA+L   A  G+        +A  +F  ++       ++T   +   C   G     
Sbjct: 82  VTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYG-SPSA 140

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            +         G+   V   G ++++  +  R++EA  L   MPV  + ++W  ++ A
Sbjct: 141 SEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVR-DVVLWNVMMKA 197


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 191/576 (33%), Positives = 317/576 (55%), Gaps = 13/576 (2%)

Query: 30   LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            + + K++   + KL       +   LI++     ++  A K+F+++ D DV  +N++I  
Sbjct: 569  VGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISG 628

Query: 90   CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            CV N  +  A   F+ M    V  D  T    + AC       L + +H    K  +  +
Sbjct: 629  CVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSRE 688

Query: 150  IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            +   N+L+D YSKCG   ++ A + F  MG++ +VSW S+IA  V+ G   +A RLF EM
Sbjct: 689  VMFNNTLLDMYSKCG--NLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEM 746

Query: 210  PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-----VSWSTMVWGYSKDGD 260
              +    D  S  ++L   A    ++   ++   I   N+     VS + M   Y+K G 
Sbjct: 747  ESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDM-YAKCGS 805

Query: 261  MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            ME A L+F ++P K +V W  +I GY++  +  EA +L+ +M++   +PD  T+  +L A
Sbjct: 806  MEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPA 864

Query: 321  CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            C     L +G  +H  I +  +    +V NAL+DMY KCGSL +A  +F+ + +KDL++W
Sbjct: 865  CGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITW 924

Query: 381  NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
              M+ G  MHG G +A+  F +M+  G  PD+ TF  +L AC+H+G +++G  +F SM  
Sbjct: 925  TVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMIS 984

Query: 441  DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            +  + P++EHY CM+DLL R+G L +A  L+++MP++P+A IWG LL  CR H+ VELAE
Sbjct: 985  ECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAE 1044

Query: 501  EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            +V + +  L+  + G Y +L+NI+A    W +V  +R ++ K   +K  G S +EV  + 
Sbjct: 1045 KVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKF 1104

Query: 561  HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
              F   D  HP+++ I+ ++N L   +K  GH+ K+
Sbjct: 1105 TTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKM 1140



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 158/514 (30%), Positives = 251/514 (48%), Gaps = 21/514 (4%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLY 83
           HKC  L + K + + I    +  +  +  KL+     C  +    ++F+ I  D  V L+
Sbjct: 464 HKC--LQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLW 521

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N ++    +     ++  +F  MQ+ G+  +++T+  +LK           + IH  +YK
Sbjct: 522 NLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYK 581

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+     V NSLI +Y K G   V  A KLF  +G+RD+VSWNSMI+G V  G    A 
Sbjct: 582 LGFGSYNTVVNSLIATYFKSG--EVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSAL 639

Query: 204 RLFDEM-PERDAVSWNTILDGY---AKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGY 255
             F +M   R  V   T+++     A  G ++L   L     +    R ++  +T++  Y
Sbjct: 640 EFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMY 699

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           SK G++  A   F++M  KT+V WT +I+ Y  +G+  +A RL+ +ME  G+ PD  ++ 
Sbjct: 700 SKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMT 759

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+L ACA    L  G  VH  I K        V NAL+DMYAKCGS++ A  VF+ +  K
Sbjct: 760 SVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK 819

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+VSWN M+ G + +    +AL LF+ M+ E   PD  T   +L AC     ++ G    
Sbjct: 820 DIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIH 878

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             + R+ G   ++     +ID+  + G L  A RL+  M  E + I W  ++  C  H  
Sbjct: 879 GCILRN-GYSSELHVANALIDMYVKCGSLVHA-RLLFDMIPEKDLITWTVMISGCGMHG- 935

Query: 496 VELAEEVLDCL--IRLKGSDPGNYTMLSNIFAAT 527
             L  E +     +R+ G  P   T  S ++A +
Sbjct: 936 --LGNEAIATFQKMRIAGIKPDEITFTSILYACS 967



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 115/377 (30%), Positives = 180/377 (47%), Gaps = 11/377 (2%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L+  + L  Q +K    R+      L+   + C  +  AI+ F  +    V  + +LI 
Sbjct: 669  SLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIA 728

Query: 89   ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            A V+  L   A R+F +M+ KGV  D ++   +L AC   N     + +H  I K     
Sbjct: 729  AYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMAL 788

Query: 149  DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
             + V N+L+D Y+KCG   +  A  +F  +  +DIVSWN+MI G  K    +EA +LF E
Sbjct: 789  CLPVSNALMDMYAKCG--SMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 209  MPER---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
            M +    D ++   +L        + +   +   I      S     + ++  Y K G +
Sbjct: 847  MQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSL 906

Query: 262  EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
              A+LLFD +P K L+ WT++ISG    G+  EA   + +M  AG+KPD+ T  SIL AC
Sbjct: 907  VHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYAC 966

Query: 322  AESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
            + SGLL  G     S I++   +        +VD+ A+ G+L  A ++   M  K D   
Sbjct: 967  SHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATI 1026

Query: 380  WNAMLYGLAMHGQGEKA 396
            W A+L G  +H   E A
Sbjct: 1027 WGALLCGCRIHHDVELA 1043



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 93/360 (25%), Positives = 165/360 (45%), Gaps = 38/360 (10%)

Query: 187 NSMIAGLVKGGELSEARRLF--DEMPERDAVSWNTILDGYA-----KAGEMNLAFELFEK 239
           N+ I    + G+L  A  L    +  E D  ++++IL   A     + G+M  +      
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNG 481

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV-PWTIIISGYAEKGMAKEAARL 298
           IP   ++  + +V+ Y   G +   + +FD + +   V  W +++S YA+ G  +E+  L
Sbjct: 482 IPIEGVLG-AKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYL 540

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           + +M++ G+  +  T   IL   A  G +G   ++H  + K  F     V N+L+  Y K
Sbjct: 541 FKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFK 600

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
            G +D+A  +F+ +  +D+VSWN+M+ G  M+G    AL  F +M     G D  T V  
Sbjct: 601 SGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNS 660

Query: 419 LCACTHAGFID-------KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           + AC + G +        +GV+  +S E        V     ++D+  + G L +A++  
Sbjct: 661 VAACANVGSLSLGRALHGQGVKACFSRE--------VMFNNTLLDMYSKCGNLNDAIQAF 712

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL------KGSDPGNYTMLSNIFA 525
           + M  +   + W +L+ A        + E + D  IRL      KG  P  Y+M S + A
Sbjct: 713 EKMG-QKTVVSWTSLIAA-------YVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHA 764


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 200/560 (35%), Positives = 313/560 (55%), Gaps = 51/560 (9%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ-E 108
           +I+ +L++  A    + L+   F+ I   DV+ +N++I A V N    +A   F  +   
Sbjct: 52  FISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLV 111

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLV--QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
             +  D +T+P +LKAC       LV  + IH   +K G+  ++FV  SLI  YS+ G  
Sbjct: 112 SEIRPDFYTFPPVLKACGT-----LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 166

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL- 221
           G+  A+ LF  M  RD+ SWN+MI+GL++ G  ++A  + DEM     + + V+  +IL 
Sbjct: 167 GI--ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP 224

Query: 222 ---DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
              D YAK G ++ A ++FE IP ++++SW+T++                          
Sbjct: 225 VFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLI-------------------------- 258

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLGLGMKVHASI 337
                +GYA+ G+A EA  +Y  MEE   + P+ GT +SIL A A  G L  GMK+H  +
Sbjct: 259 -----TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV 313

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K     +  V   L+D+Y KCG L +AMS+F  + ++  V+WNA++    +HG  EK L
Sbjct: 314 IKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTL 373

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF  M DEG  PD  TFV +L AC+H+GF+++G ++ + + ++YGI P ++HYGCM+DL
Sbjct: 374 KLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-KWCFRLMQEYGIKPSLKHYGCMVDL 432

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G L+ A   ++ MP++P+A IWG LLGACR H  +EL +   D L  +   + G Y
Sbjct: 433 LGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYY 492

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A  G W  V  VR   ++   +K  G S++EV+ +V  F   +Q HPK ++IY
Sbjct: 493 VLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIY 552

Query: 578 QMINTLGKDLKPVGHAAKLS 597
           + +  L   +K +G+    S
Sbjct: 553 EELRVLTAKMKSLGYIPDYS 572



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 175/388 (45%), Gaps = 45/388 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C  L   +++     KL  Q + ++A  LI   +     G+A  +F+D+   D+  +
Sbjct: 125 LKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 184

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I   +QN   AQA  V  +M+ +G+  +  T   +L                     
Sbjct: 185 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPV------------------- 225

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
              F D++    L+DS           A K+F  +  +D++SWN++I G  + G  SEA 
Sbjct: 226 ---FVDMYAKLGLLDS-----------AHKVFEIIPVKDVISWNTLITGYAQNGLASEAI 271

Query: 204 RLFDEMPERDAV-----SWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWG 254
            ++  M E   +     +W +IL  YA  G +    ++  ++     H ++   + ++  
Sbjct: 272 EVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDV 331

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G +  A  LF ++P ++ V W  IIS +   G A++  +L+ +M + G+KPD  T 
Sbjct: 332 YGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTF 391

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT- 373
           +S+L+AC+ SG +  G      + +Y  K +      +VD+  + G L+ A      M  
Sbjct: 392 VSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL 451

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           + D   W A+L    +HG  E  LG F+
Sbjct: 452 QPDASIWGALLGACRIHGNIE--LGKFA 477



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 98/421 (23%), Positives = 164/421 (38%), Gaps = 63/421 (14%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +QN +  + L+   ++  + IK++      I P  +   A    +  A KVF  I   DV
Sbjct: 192 IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDV 251

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             +NTLI    QN L ++A  V+  M+E K +  +  T+  +L A            IH 
Sbjct: 252 ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHG 311

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K     D+FV   LID Y KCG                                  L
Sbjct: 312 RVIKTNLHLDVFVATCLIDVYGKCG---------------------------------RL 338

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGY 255
            +A  LF ++P+  +V+WN I+  +   G      +LF ++    +    V++ +++   
Sbjct: 339 VDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSAC 398

Query: 256 SKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           S  G +E  K  F  M    + P    +  ++      G  + A   YD +++  L+PD 
Sbjct: 399 SHSGFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMA---YDFIKDMPLQPDA 455

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG---SLDNAMSV 368
               ++L AC   G + LG      + +   K N      L ++YA  G    +D   S+
Sbjct: 456 SIWGALLGACRIHGNIELGKFASDRLFEVDSK-NVGYYVLLSNIYANVGKWEGVDKVRSL 514

Query: 369 FNGMTKKDLVSWNAM---------LYGLAMHGQG----EKALGLFSRMKDEGFGPDKYTF 415
                 K    W+ +           G   H +     E+   L ++MK  G+ PD Y+F
Sbjct: 515 ARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPD-YSF 573

Query: 416 V 416
           V
Sbjct: 574 V 574


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 313/598 (52%), Gaps = 35/598 (5%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L++ +   QL A  +K D   D  +    +   A C  M  A  +F+  ++ + 
Sbjct: 246 LRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNR 305

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             YN +I    Q     +A  +F  +   G+  D  +   + +AC           I+ L
Sbjct: 306 QSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDL 365

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K     D+ V N+ ID Y KC    ++ A ++F  M  RD VSWN++IA   + G+  
Sbjct: 366 AIKSSLSLDVCVANAAIDMYGKCQ--ALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGY 423

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MV 252
           E   LF  M     E D  ++ ++L      G +    E+   I    + S S+    ++
Sbjct: 424 ETLFLFVSMLRSRIEPDEFTFGSVLKA-CTGGSLGYGMEIHSSIVKSGMASNSSVGCSLI 482

Query: 253 WGYSKDGDMEMAKLLFDRMPAKT--------------------LVPWTIIISGYAEKGMA 292
             YSK G +E A+ +  R   +T                     V W  IISGY  K  +
Sbjct: 483 DMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQS 542

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           ++A  L+ +M E G+ PD  T  ++L  CA     GLG ++HA + K   + +  + + L
Sbjct: 543 EDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTL 602

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VDMY+KCG L ++  +F    ++D V+WNAM+ G A HG+GE+A+ LF RM  E   P+ 
Sbjct: 603 VDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNH 662

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF+ +L AC H G IDKG++YFY M+RDYG+ PQ+ HY  M+D+LG+SG++K AL L++
Sbjct: 663 VTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIR 722

Query: 473 SMPVEPNAIIWGTLLGACRKH-NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
            MP E + +IW TLLG C  H N VE+AEE    L+RL   D   YT+LSN++A  G W 
Sbjct: 723 EMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWE 782

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           KV+++R  M+  + +K  G S VE+ +E+H F V D+ HP+ E+IY+ +  +  ++KP
Sbjct: 783 KVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP 840



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 226/458 (49%), Gaps = 18/458 (3%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD     K+I+  A    M  A   FN +   DV  +N+++   +QN    ++  VF+DM
Sbjct: 70  RDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDM 129

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
              G   D  T+  +LK C+      L   IH ++ + G   D+   ++L+D Y+K    
Sbjct: 130 GRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRF 189

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA-VS---WNTILD 222
             SL  ++F  + E++ VSW+++IAG V+   LS A + F EM + +A VS   + ++L 
Sbjct: 190 VESL--RVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 223 GYAKAGEMNL-----AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             A   E+ L     A  L        IV  +T+   Y+K  +M+ A++LFD+       
Sbjct: 248 SCAALSELRLGGQLHAHALKSDFAADGIVRTATLDM-YAKCDNMQDAQILFDKSENLNRQ 306

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +  +I+GY+++    +A  L+ ++  +GL  D+ +L  +  ACA    L  G++++   
Sbjct: 307 SYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLA 366

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K     +  V NA +DMY KC +L  A  VF+ M ++D VSWNA++     +G+G + L
Sbjct: 367 IKSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETL 426

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MID 456
            LF  M      PD++TF  VL ACT  G +  G++   S+ +    +      GC +ID
Sbjct: 427 FLFVSMLRSRIEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVKSG--MASNSSVGCSLID 483

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           +  + G ++EA ++        N  + GT+    + HN
Sbjct: 484 MYSKCGMIEEAEKIHSRFFQRTN--VSGTMEELEKMHN 519



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 145/578 (25%), Positives = 248/578 (42%), Gaps = 83/578 (14%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L  T    Q+   ++++    D   A  L+   A  ++   +++VF  I + + 
Sbjct: 145 LKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNS 204

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ +I  CVQN+L + A + F +MQ+         Y  +L++C   +   L   +HA 
Sbjct: 205 VSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAH 264

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  +  D  V  + +D Y+KC    +  A+ LF      +  S+N+MI G  +     
Sbjct: 265 ALKSDFAADGIVRTATLDMYAKCD--NMQDAQILFDKSENLNRQSYNAMITGYSQEEHGF 322

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-- 254
           +A  LF  +       D +S + +    A    ++   ++++ +  ++ +S    V    
Sbjct: 323 KALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYD-LAIKSSLSLDVCVANAA 381

Query: 255 ---YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              Y K   +  A  +FD M  +  V W  II+ + + G   E   L+  M  + ++PD+
Sbjct: 382 IDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDE 441

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA------ 365
            T  S+L AC   G LG GM++H+SI K     N++V  +L+DMY+KCG ++ A      
Sbjct: 442 FTFGSVLKACT-GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSR 500

Query: 366 ----------MSVFNGMTKKDL----VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
                     M     M  K L    VSWN+++ G  M  Q E A  LF+RM + G  PD
Sbjct: 501 FFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPD 560

Query: 412 KYTFVGVLCACT-----------HAGFIDKGVQ-------------------------YF 435
           K+T+  VL  C            HA  I K +Q                         + 
Sbjct: 561 KFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFE 620

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGACRK 492
            S+ RD+        +  MI      G+ +EA++L + M +E   PN + + ++L AC  
Sbjct: 621 KSLRRDFVT------WNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAH 674

Query: 493 HNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATG 528
              ++   E    + R  G DP   +Y+ + +I   +G
Sbjct: 675 MGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSG 712



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 193/450 (42%), Gaps = 58/450 (12%)

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC-GVVGVSLAKKLFMSMGERDI 183
           C  +    L +  HA +   G+    FV N L+  Y+     V  S+   +F  M  RD+
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASM---VFDRMPLRDV 72

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH- 242
           VSWN MI G  K   + +A   F+ MP RD VSWN++L GY + GE   + E+F  +   
Sbjct: 73  VSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRA 132

Query: 243 --------------------------------------RNIVSWSTMVWGYSKDGDMEMA 264
                                                  ++V+ S ++  Y+K      +
Sbjct: 133 GTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVES 192

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F  +P K  V W+ II+G  +  +   A + + +M++           S+L +CA  
Sbjct: 193 LRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAAL 252

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L LG ++HA   K  F  +  V  A +DMYAKC ++ +A  +F+     +  S+NAM+
Sbjct: 253 SELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMI 312

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G +    G KAL LF R+   G G D+ +  GV  AC     + +G+Q +     D  I
Sbjct: 313 TGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-----DLAI 367

Query: 445 LPQVEHYGCM----IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
              +    C+    ID+ G+   L EA R+   M    +A+ W  ++ A   H       
Sbjct: 368 KSSLSLDVCVANAAIDMYGKCQALAEAFRVFDEMR-RRDAVSWNAIIAA---HEQNGKGY 423

Query: 501 EVLDCLIRLKGS--DPGNYTMLSNIFAATG 528
           E L   + +  S  +P  +T  S + A TG
Sbjct: 424 ETLFLFVSMLRSRIEPDEFTFGSVLKACTG 453


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 208/618 (33%), Positives = 309/618 (50%), Gaps = 74/618 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLD-LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           LQ+    K+  Q +QL A +I    L+ + Y+  KL +  A C  M  A  +F+ I   +
Sbjct: 66  LQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKN 125

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             L+N +IR    N L  ++  ++ +M   G   DNFTYPF+LKAC       + + +H+
Sbjct: 126 SFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHS 185

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            +  CG   DI+V NS                                 ++A   K G++
Sbjct: 186 EVVVCGLESDIYVGNS---------------------------------LLAMYAKFGDM 212

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE--------------------- 238
             AR +FD M ERD  SWNT++ GYAK  +   AF +F+                     
Sbjct: 213 GTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSAC 272

Query: 239 ---------KIPH----RNIVS------WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
                    K+ H    RN +        ++++  Y     M  A+ LF+R+  K  V W
Sbjct: 273 ADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSW 332

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I GYA  G A E+ RL+ +M   G  PD  T I++L AC +   L  GM +H+ + K
Sbjct: 333 NSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVK 392

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
             F  NT V  ALVDMY+KCGSL  +  VF+ M  K LVSW+AM+ G  +HG+G +A+ +
Sbjct: 393 KGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISI 452

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
              MK     PD   F  +L AC+HAG + +G + FY ME++Y + P + HY CM+DLLG
Sbjct: 453 LDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLG 512

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G L EA  ++++M ++P + IW  LL A R H  ++LAE     +  +      +Y  
Sbjct: 513 RAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYIC 572

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSNI+AA   W+ V  VR  +++   +K  G S +E+DN VH F V D+ H ++E IY  
Sbjct: 573 LSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAK 632

Query: 580 INTLGKDLKPVGHAAKLS 597
           +N L + LK  G+    S
Sbjct: 633 LNELKQQLKEAGYKPDTS 650


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 183/503 (36%), Positives = 300/503 (59%), Gaps = 38/503 (7%)

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
           K+  HL+Q IHA + + G + +  +   L  SY+  G +  S+   +F +  E ++ S++
Sbjct: 58  KSVAHLLQ-IHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVF--VFNTFDEPNVFSFS 114

Query: 188 SMIAGLVKGGELSEARRLFDEM----PERDAVSWNTIL---------------------- 221
           ++I   V+      A   + +M     E +A +++++L                      
Sbjct: 115 AIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGS 174

Query: 222 ---------DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                    D YA+ G++  A +LF+K+P R++VS +TM+  YSK G+++ A+ LF+ M 
Sbjct: 175 DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMK 234

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + +V W ++I GYA+ G+  E+ +L+ +M  A   P++ T++++L+AC + G L  G  
Sbjct: 235 ERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRW 294

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H+ I     + N +V  AL+DMY+KCGSL++A  VF+ +  KD+V+WN+M+ G AMHG 
Sbjct: 295 IHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGF 354

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            + AL LF  M + G  P   TF+G+L AC H G +++G  +F  M   YGI P++EHYG
Sbjct: 355 SQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYG 414

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM++LLGR+G L+EA  LV++M +  + ++WGTLLG CR H  ++L EE+   L+  K +
Sbjct: 415 CMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLA 474

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           + G Y +LSN++AATG+W  VA +R  MK+   +K  G SS+EVDN+VHEF   ++ HPK
Sbjct: 475 NSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPK 534

Query: 573 SEQIYQMINTLGKDLKPVGHAAK 595
           S++IY M+N +   LK  G+  +
Sbjct: 535 SKEIYVMLNEINSWLKARGYTPQ 557



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/406 (29%), Positives = 201/406 (49%), Gaps = 47/406 (11%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K K++    Q+ A +++  L  +P +  KL  S A   ++  ++ VFN   +P+V  ++ 
Sbjct: 56  KSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSA 115

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I + VQ+ L  +AF  +  M   GV  + FT+  +LK+C+ ++     +++H    K G
Sbjct: 116 IIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESG----KVLHCQAIKLG 171

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D++V   L+D Y++ G   V  A++LF  M ER +VS  +M+    K GEL +AR L
Sbjct: 172 LGSDLYVRTGLVDVYARGG--DVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSL 229

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK------IPHR---------------- 243
           F+ M ERD V WN ++ GYA++G  N + +LF +      IP+                 
Sbjct: 230 FEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGAL 289

Query: 244 -----------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
                            N+   + ++  YSK G +E A+L+FDR+  K +V W  +I GY
Sbjct: 290 ESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGY 349

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCN 345
           A  G ++ A +L+++M E G KP D T I IL+AC   GL+  G      + +KY  +  
Sbjct: 350 AMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPK 409

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMH 390
                 +V++  + G L+ A  +   MT   D V W  +L    +H
Sbjct: 410 IEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLH 455


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 193/577 (33%), Positives = 310/577 (53%), Gaps = 14/577 (2%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L +    K +   +IK     D  +    +   A C     AIK+F+++ + DV
Sbjct: 113 LKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDV 172

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N +I    Q+    +A  +F +M+  G   D+ T   ++ +C         + IH  
Sbjct: 173 ASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHME 232

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G+  D FV ++L+D Y KCG +   +AK++F  +  +++VSWNSMIAG    G+  
Sbjct: 233 LVRSGFALDGFVSSALVDMYGKCGCL--EMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSK 290

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMV 252
               LF  M E       T L     A   ++  +L + I           +I   S+++
Sbjct: 291 SCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLI 350

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G++  A+ +F  MP   +V W ++ISGY + G   EA  ++  M +AG+KPD  
Sbjct: 351 DLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAI 410

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T  S+L AC++  +L  G ++H  I + + + N  V  AL+DMYAKCG++D A+ +FN +
Sbjct: 411 TFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQL 470

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++D VSW +M+     HGQ  +AL LF +M+     PDK TF+ +L AC+HAG +D+G 
Sbjct: 471 PERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGC 530

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-VEPNAIIWGTLLGACR 491
            YF  M  +YG  P VEHY C+IDLLGR GRL+EA  ++Q  P +  +  +  TL  AC 
Sbjct: 531 YYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGLLSTLFSACH 590

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  ++L E++   LI     DP  Y +LSN++A+   W++V  VRL++K+   +K  G 
Sbjct: 591 LHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKELGLKKNPGC 650

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           S +EV   +H F V D+ HP+++ IY+ ++ L   ++
Sbjct: 651 SWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVE 687



 Score =  228 bits (581), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 162/544 (29%), Positives = 262/544 (48%), Gaps = 83/544 (15%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-DVHLYNTL 86
           K L Q K +  +I+ L LQ +  +   LI+    C     A  VF  I++P D+ L+N L
Sbjct: 17  KYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGL 76

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           + AC +N +  +   VF  +        D FTYP +LKAC+G       +M+H  + K G
Sbjct: 77  MAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSG 136

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D+ V +S +  Y+KC V   ++  KLF  M ERD+ SWN++I+   + G+  +A  L
Sbjct: 137 FAMDVVVMSSAVGMYAKCNVFEDAI--KLFDEMPERDVASWNNVISCYYQDGQPEKALEL 194

Query: 206 FDEMP----ERDAVSWNTIL-----------------------------------DGYAK 226
           F+EM     + D+V+  T++                                   D Y K
Sbjct: 195 FEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGK 254

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            G + +A E+FE+I  +N+VSW++M+ GYS  GD                          
Sbjct: 255 CGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGD-------------------------- 288

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
                +K    L+ +M+E G++P   TL SIL AC+ S  L LG  +H  I + R + + 
Sbjct: 289 -----SKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADI 343

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
            V ++L+D+Y KCG++ +A +VF  M K ++VSWN M+ G    G   +AL +F+ M+  
Sbjct: 344 FVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKA 403

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
           G  PD  TF  VL AC+    ++KG + + + +E    I   V   G ++D+  + G + 
Sbjct: 404 GVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVV--MGALLDMYAKCGAVD 461

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNI 523
           EAL +   +P E + + W +++ A   H     A E L    +++ SD  P   T L+ +
Sbjct: 462 EALHIFNQLP-ERDFVSWTSMIAAYGSHGQ---AFEALKLFEKMQQSDAKPDKVTFLAIL 517

Query: 524 FAAT 527
            A +
Sbjct: 518 SACS 521



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/426 (28%), Positives = 200/426 (46%), Gaps = 33/426 (7%)

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM-G 179
           LLK C    +    ++IH  I   G   +I +  SLI+ Y  C +     AK +F ++  
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHL--FQSAKLVFQTIEN 66

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEM-----PERDAVSWNTILDGYAKAGEMNLAF 234
             DI  WN ++A   K     E   +F  +      + DA ++ ++L   +  G +    
Sbjct: 67  PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVG--- 123

Query: 235 ELFEKIPHR---------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
             + K+ H          ++V  S+ V  Y+K    E A  LFD MP + +  W  +IS 
Sbjct: 124 --YGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISC 181

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y + G  ++A  L+++M+ +G KPD  TL +++++CA    L  G ++H  + +  F  +
Sbjct: 182 YYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALD 241

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V +ALVDMY KCG L+ A  VF  + +K++VSWN+M+ G ++ G  +  + LF RM +
Sbjct: 242 GFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDE 301

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH----YGCMIDLLGRS 461
           EG  P   T   +L AC+ +  +  G          Y I  +VE        +IDL  + 
Sbjct: 302 EGIRPTLTTLSSILMACSRSVNLQLG-----KFIHGYIIRNRVEADIFVNSSLIDLYFKC 356

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G +  A  + Q+MP + N + W  ++    K  +  L   V+   +R  G  P   T  S
Sbjct: 357 GNIGSAENVFQNMP-KTNVVSWNVMISGYVKVGSY-LEALVIFTDMRKAGVKPDAITFTS 414

Query: 522 NIFAAT 527
            + A +
Sbjct: 415 VLPACS 420


>gi|357438957|ref|XP_003589755.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478803|gb|AES60006.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 891

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/566 (33%), Positives = 327/566 (57%), Gaps = 47/566 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +N+ ++LF    + D Q+   +   ++S      ++  A ++FN++   +V  +NT
Sbjct: 88  KCGLINEARKLFD---RPDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNT 144

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    +N    +A  +F  M E+ V +                W               
Sbjct: 145 MIDGYARNGRTQEALDLFGRMPERNVVS----------------W--------------- 173

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                   N+++ + + CG   +  A++LF  M ERD+VSW +M+AGL K G +  AR +
Sbjct: 174 --------NTVMTALAHCG--RIDDAERLFNEMRERDVVSWTTMVAGLSKNGRVDAAREV 223

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD+MP R+ VSWN ++ GYA+ G  + A +LFE++P R++ SW+TMV G+ ++GD+  A+
Sbjct: 224 FDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPERDMPSWNTMVTGFIQNGDLNRAE 283

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAES 324
            LF  MP K ++ WT +++GY + G+++EA +L+++M+   GLKP  GT +++L AC++ 
Sbjct: 284 QLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACSDL 343

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-GMT-KKDLVSWNA 382
             L  G ++H  I+K  F+ +T V +AL++MY+KCG    A  +F+ G++   DL++WN 
Sbjct: 344 AGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHVAKKMFDDGLSGHMDLIAWNG 403

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G +A+ LF++M++ GF  +  T+VG+L AC+HAG  D+G +YF  + ++ 
Sbjct: 404 MIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDELLKNR 463

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I  + +HY C+IDL GR+GRL EAL +++ +  E +  +WG LL  C  H   ++ + V
Sbjct: 464 YIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADIGKLV 523

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D +++++  +   Y + SN++A+ G   + ANVR++MKK   +K  G S ++V N V  
Sbjct: 524 ADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGNTVQV 583

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLK 588
           F V D+ H + E +  ++  L   +K
Sbjct: 584 FVVNDKSHSQFEMLKYLLLDLHTKMK 609



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 165/281 (58%), Gaps = 12/281 (4%)

Query: 155 SLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           ++I  Y KCG++  + A+KLF     ++ ++ W +M++G +K   + EA RLF+EMP R+
Sbjct: 81  TMISGYIKCGLI--NEARKLFDRPDAQKSVIVWTAMVSGYIKMNRIEEAERLFNEMPVRN 138

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
            VSWNT++DGYA+ G    A +LF ++P RN+VSW+T++   +  G ++ A+ LF+ M  
Sbjct: 139 VVSWNTMIDGYARNGRTQEALDLFGRMPERNVVSWNTVMTALAHCGRIDDAERLFNEMRE 198

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           + +V WT +++G ++ G    A  ++D+M    +     +  +++A  A++G     +K+
Sbjct: 199 RDVVSWTTMVAGLSKNGRVDAAREVFDKMPIRNVV----SWNAMIAGYAQNGRFDEALKL 254

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
              + +     +    N +V  + + G L+ A  +F+ M +K++++W AM+ G   HG  
Sbjct: 255 FERMPER----DMPSWNTMVTGFIQNGDLNRAEQLFHAMPQKNVITWTAMMTGYVQHGLS 310

Query: 394 EKALGLFSRMK-DEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           E+AL LF++M+ ++G  P   TFV VL AC+    + +G Q
Sbjct: 311 EEALKLFNKMQANDGLKPTTGTFVTVLGACSDLAGLPEGQQ 351



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 164/309 (53%), Gaps = 22/309 (7%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNI 245
           N  I+ L + G+++EAR++FDEM +RD+  W T++ GY K G +N A +LF++    +++
Sbjct: 49  NYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDRPDAQKSV 108

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           + W+ MV GY K   +E A+ LF+ MP + +V W  +I GYA  G  +EA  L+ +M E 
Sbjct: 109 IVWTAMVSGYIKMNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQEALDLFGRMPER 168

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            +     +  +++ A A  G +    ++   + +      T +   L    +K G +D A
Sbjct: 169 NVV----SWNTVMTALAHCGRIDDAERLFNEMRERDVVSWTTMVAGL----SKNGRVDAA 220

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF+ M  +++VSWNAM+ G A +G+ ++AL LF RM +     D  ++  ++      
Sbjct: 221 REVFDKMPIRNVVSWNAMIAGYAQNGRFDEALKLFERMPER----DMPSWNTMVTGFIQN 276

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAI 481
           G +++  Q F++M +       V  +  M+    + G  +EAL+L   M     ++P   
Sbjct: 277 GDLNRAEQLFHAMPQ-----KNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTG 331

Query: 482 IWGTLLGAC 490
            + T+LGAC
Sbjct: 332 TFVTVLGAC 340



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 204/494 (41%), Gaps = 97/494 (19%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACN 126
           A ++F+ +   +V  +  ++   VQ+ L+ +A ++F  MQ   G+     T+  +L AC+
Sbjct: 282 AEQLFHAMPQKNVITWTAMMTGYVQHGLSEEALKLFNKMQANDGLKPTTGTFVTVLGACS 341

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS--MGERDIV 184
                   Q IH +I K  +    +V ++LI+ YSKCG   V  AKK+F     G  D++
Sbjct: 342 DLAGLPEGQQIHQMISKTVFQESTYVVSALINMYSKCGDFHV--AKKMFDDGLSGHMDLI 399

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           +WN MIA     G  +EA  LF++M E     + V++  +L   + AG  +  F+ F+++
Sbjct: 400 AWNGMIAAYAHHGYGNEAINLFNKMQELGFQANDVTYVGLLTACSHAGLFDEGFKYFDEL 459

Query: 241 PHR---------------------------NIVS----------WSTMVWGYSKDGDMEM 263
                                         NI+           W  ++ G S  G+ ++
Sbjct: 460 LKNRYIQVREDHYTCLIDLCGRAGRLDEALNIIEGLGKEVSLSLWGALLAGCSVHGNADI 519

Query: 264 AKLLFDR---MPAKTLVPWTIIISGYAEKGMAKEAA--RLYDQMEEAGLKP-----DDGT 313
            KL+ D+   M  +    + +  + YA  GM +EAA  R+  + +    +P     D G 
Sbjct: 520 GKLVADKVLKMEPENADTYLLASNMYASVGMREEAANVRMKMKKKGLKKQPGCSWIDVGN 579

Query: 314 LISILAACAESG-----LLGLGMKVHASINKYRFKCNTNVCNALVDM------------- 355
            + +     +S      L  L + +H  + K R   + ++   LVD+             
Sbjct: 580 TVQVFVVNDKSHSQFEMLKYLLLDLHTKMKKNRDMSDDDL---LVDVEIYLWKARVVAKW 636

Query: 356 -------------YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                        +    S+    S+++ +   DLV+++ ++Y     G  + AL +++ 
Sbjct: 637 PDYKQKIEGASTQHNPVLSIVFRKSIYHSLIG-DLVAYSLIVYVKVSLGDLDFALKMYNE 695

Query: 403 MKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           M   GF      YTF+   C     G +D+ +     ME   G+    E Y C+I     
Sbjct: 696 MVRRGFSESSLVYTFIRAFC---EKGRVDEAIGLMTEMEGK-GLRAYDETYECVIVGCAD 751

Query: 461 SGRLKEALRLVQSM 474
           SGRL E   + + M
Sbjct: 752 SGRLNECWSVFEEM 765



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
           CN  +    + G ++ A  VF+ M+K+D   W  M+ G    G   +A  LF R      
Sbjct: 48  CNYFISKLCREGKVNEARKVFDEMSKRDSCLWTTMISGYIKCGLINEARKLFDR------ 101

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP--QVEHYGCMIDLLGRSGRLKE 466
            PD    V V  A   +G+I   +      ER +  +P   V  +  MID   R+GR +E
Sbjct: 102 -PDAQKSVIVWTAMV-SGYIK--MNRIEEAERLFNEMPVRNVVSWNTMIDGYARNGRTQE 157

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           AL L   MP E N + W T++ A      ++ AE + +
Sbjct: 158 ALDLFGRMP-ERNVVSWNTVMTALAHCGRIDDAERLFN 194


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 215/671 (32%), Positives = 344/671 (51%), Gaps = 104/671 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV-FNDIQDPDVHLYN 84
           +  N +  +QL AQII   L    Y    LI+     R       + FN   +P+V ++ 
Sbjct: 10  RVGNFSHLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFT 69

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK-ACNGKNWF--HLVQMIH--- 138
           +++R       +A+   +F  MQ  GV  D F YP L+K A NG   F  H++++ H   
Sbjct: 70  SMLRFYSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGHGSD 129

Query: 139 -----------ALIYKCGYFGDIF--VP---------NSLIDSYSK-------------- 162
                      A +   G+   +F  +P         N+++  Y K              
Sbjct: 130 AFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVM 189

Query: 163 ---------------CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
                            V  +  A++ F  M ER +VSWN+M++G  + G   E  RLFD
Sbjct: 190 PERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFD 249

Query: 208 EMP----ERDAVSWNTI-----------------------------------LDGYAKAG 228
           EM     E D  +W T+                                   LD YAK G
Sbjct: 250 EMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCG 309

Query: 229 EMNLAFELFEKI-PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
            +  A  +F+++  +RN V+W+ M+  Y++ G+++ A+ LF+ MP + +V W  +I+GYA
Sbjct: 310 SIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYA 369

Query: 288 EKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           + G +  A  L+ +M  A  L PD+ T++S+++AC   G L LG  V   + + + K + 
Sbjct: 370 QNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSI 429

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           +  NA++ MY++CGS+++A  VF  M  +D+VS+N ++ G A HG G +A+ L S MK+ 
Sbjct: 430 SGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEG 489

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  PD+ TF+GVL AC+HAG +++G + F S++      P ++HY CM+DLLGR G L++
Sbjct: 490 GIEPDRVTFIGVLTACSHAGLLEEGRKVFESIKD-----PAIDHYACMVDLLGRVGELED 544

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A R ++ MP+EP+A ++G+LL A R H  VEL E   + L  L+  + GN+ +LSNI+A+
Sbjct: 545 AKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYAS 604

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
            G W  V  +R  MKK   +K +G S VE   ++H+F V D+ H +S+ IYQ++  L K 
Sbjct: 605 AGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKK 664

Query: 587 LKPVGHAAKLS 597
           ++  G+ A  S
Sbjct: 665 MREAGYIADKS 675


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 322/574 (56%), Gaps = 14/574 (2%)

Query: 36  LFAQIIKLD-LQRDPYIAPKLISSLALCR-QMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +F  ++K   LQ D  +   LI      R  +  A KVF  + + +   +  +I   +Q 
Sbjct: 190 IFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  +FL+M   G   D FT   ++ AC       L Q +H+   + G   D  V 
Sbjct: 250 GYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 154 NSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSWNSMIAGLV-KGGELSEARRLFDEMPE 211
             LI+ Y+KC V G +  A+K+F  + + ++ SW +MI G V KGG   EA  LF  M  
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 212 RDAV----SWNTILDGYAKAGEMNLAFELFEK-----IPHRNIVSWSTMVWGYSKDGDME 262
              +    ++++ L   A    + +  ++F           N V+ ++++  Y++ G ++
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVA-NSLISMYARSGRID 428

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+  FD +  K L+ +  +I  YA+   ++EA  L++++E+ G+     T  S+L+  A
Sbjct: 429 DARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAA 488

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
             G +G G ++HA + K   K N +VCNAL+ MY++CG++++A  VF  M  ++++SW +
Sbjct: 489 SIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTS 548

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++ G A HG   +AL LF +M +EG  P+  T++ VL AC+H G +++G ++F SM  ++
Sbjct: 549 IITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEH 608

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G++P++EHY CM+D+LGRSG L EA++ + SMP + +A++W T LGACR H  +EL +  
Sbjct: 609 GVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHA 668

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              +I  +  DP  Y +LSN++A+T  W++V+N+R  MK+    K +G S VEV+N+VH+
Sbjct: 669 AKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHK 728

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           F V D  HPK+ +IY  +  L   +K +G+   L
Sbjct: 729 FYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNL 762



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 227/488 (46%), Gaps = 21/488 (4%)

Query: 39  QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQNSLNA 97
           ++ + DLQ D      LIS  + C Q   A  +F  +    D+  ++ ++     N++  
Sbjct: 91  KLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF-GDIFVPNSL 156
           +A   F+DM E G + + + +    +AC+   +  +   I   + K GY   D+ V   L
Sbjct: 151 RALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGL 210

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ER 212
           ID + K G   +  A K+F  M ER+ V+W  MI  L++ G   EA  LF EM     E 
Sbjct: 211 IDMFVK-GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEP 269

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-------SWSTMVWGYSKDGDMEMAK 265
           D  + + ++   A    + L  +L  +     +            M    S DG M  A+
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329

Query: 266 LLFDRMPAKTLVPWTIIISGYAEK-GMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            +FD++    +  WT +I+GY +K G  +EA  L+  M    + P+  T  S L ACA  
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANL 389

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L +G +V     K  F     V N+L+ MYA+ G +D+A   F+ + +K+L+S+N ++
Sbjct: 390 AALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVI 449

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
              A +   E+AL LF+ ++D+G G   +TF  +L      G I KG Q    + +  G+
Sbjct: 450 DAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GL 508

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAE 500
                    +I +  R G ++ A ++ + M  + N I W +++    KH     A+EL  
Sbjct: 509 KLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFH 567

Query: 501 EVLDCLIR 508
           ++L+  +R
Sbjct: 568 KMLEEGVR 575



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/465 (26%), Positives = 197/465 (42%), Gaps = 87/465 (18%)

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
           + N    +A      M  +G   D  TY   LK C     F +  ++H  + +     D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
              NSLI  YSKCG      A  +F  MG  RD++SW++M++          A   F +M
Sbjct: 102 VTLNSLISLYSKCG--QWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 210 PER-------------------------DAVSWNTILDGYAKA----------------G 228
            E                          D++    +  GY ++                G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
           ++  AF++FEK+P RN V+                               WT++I+   +
Sbjct: 220 DLVSAFKVFEKMPERNAVT-------------------------------WTLMITRLMQ 248

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G A EA  L+ +M  +G +PD  TL  +++ACA   LL LG ++H+   ++    +  V
Sbjct: 249 FGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 349 CNALVDMYAKC---GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH-GQGEKALGLFSRMK 404
              L++MYAKC   GS+  A  +F+ +   ++ SW AM+ G     G  E+AL LF  M 
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMI 368

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-YSMERDYGILPQVEHYGCMIDLLGRSGR 463
                P+ +TF   L AC +   +  G Q F ++++  +  +  V +   +I +  RSGR
Sbjct: 369 LTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN--SLISMYARSGR 426

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLD 504
           + +A R    +  E N I + T++ A  K+     A+EL  E+ D
Sbjct: 427 IDDA-RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIED 470



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G   +A    + M   G  PD  T    L  C  +    +G  VH  + +   + ++   
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
           N+L+ +Y+KCG  + A S+F  M + +DL+SW+AM+   A +  G +AL  F  M + G+
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MIDLL--GRSGRLK 465
            P++Y F     AC+ A F+  G   F  + +  G L      GC +ID+   GR G L 
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVVKT-GYLQSDVCVGCGLIDMFVKGR-GDLV 222

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR--LKGSDPGNYTMLSNI 523
            A ++ + MP E NA+ W  ++    +      A E +D  +   L G +P  +T LS +
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMITRLMQFG---YAGEAIDLFLEMILSGYEPDRFT-LSGV 277

Query: 524 FAATGD 529
            +A  +
Sbjct: 278 ISACAN 283



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 138/297 (46%), Gaps = 18/297 (6%)

Query: 23  NLHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
            L  C NL   +   Q+F   +KL       +A  LIS  A   ++  A K F+ + + +
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           +  YNT+I A  +N  + +A  +F +++++G+    FT+  LL            + IHA
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   +  V N+LI  YS+CG   +  A ++F  M +R+++SW S+I G  K G  
Sbjct: 502 RVIKSGLKLNQSVCNALISMYSRCG--NIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559

Query: 200 SEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-----SWST 250
           ++A  LF +M E     + V++  +L   +  G +N  ++ F+ +   + V      ++ 
Sbjct: 560 TQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKG---MAKEAARLYDQME 303
           MV    + G +  A    + MP K   + W   +      G   + K AA++  + E
Sbjct: 620 MVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676


>gi|224071603|ref|XP_002303536.1| predicted protein [Populus trichocarpa]
 gi|222840968|gb|EEE78515.1| predicted protein [Populus trichocarpa]
          Length = 596

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 188/561 (33%), Positives = 317/561 (56%), Gaps = 39/561 (6%)

Query: 31  NQTKQLFAQIIKLDLQR-DPYIAPK-LISSLALCRQMGLAI-KVFNDIQDPDVHLYNTLI 87
           NQ KQ  A II       +P +  + L+S+    R++   +  +   +  PD   +   I
Sbjct: 37  NQAKQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAI 96

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           R   Q     +A  +++ MQ +G+    F     L+A     +      IHA  YK G+ 
Sbjct: 97  RYFSQQGQFKEALYLYVQMQRQGLCPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFS 156

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             ++V  +L+D YSK G   ++ A+K+F  + E+++VSWNS+++G +K G L EA+R+FD
Sbjct: 157 NCVYVQTALVDLYSKLG--DMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFD 214

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           ++ ++D +SWN+++ GYAK G+M+ A  LF+++P +N  SW+ ++ GY   GD++ A   
Sbjct: 215 QISKKDVISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRF 274

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE----------------------- 304
           FD MP +  V W  +I+GY++ G    A++L+DQ+ +                       
Sbjct: 275 FDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAMISCFAQNSQPRKAL 334

Query: 305 ----------AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
                     A ++PD  TL S+++AC++ G L     + + +N    + +  +  AL+D
Sbjct: 335 WLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLD 394

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           +YAKCGS+D A  +F+G+ KKD+V+++AM+ G  ++G+   A+ LF  M D    P+  T
Sbjct: 395 LYAKCGSVDKAYELFHGLNKKDVVAYSAMISGCGINGKVADAIKLFDMMVDAQIHPNLAT 454

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F G+L AC HAG + +G ++F SM +D+G++P  +HY  M+DLLGR+GRL++A  L++SM
Sbjct: 455 FTGLLTACNHAGLVKEGYRFFSSM-KDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSM 513

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P++P++ +WG LL AC  HN VEL E        L+ +    Y++L+NI+++ G W+ V 
Sbjct: 514 PMQPHSGVWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVG 573

Query: 535 NVRLQMKKTRAQKPSGASSVE 555
            +R   K+ +  K SG S  E
Sbjct: 574 RLRKLWKEKKLAKLSGCSWTE 594


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 295/537 (54%), Gaps = 38/537 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIKVFNDIQDP 78
           L  L KCK+++Q KQ+ +Q++   L  D + + +LI+  A+   R +     +  + ++P
Sbjct: 54  LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIAFCAISEWRDLDYCTNILFNTRNP 113

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           +   +N  IR  + +    +A  ++   +Q  G   DN+TYP L KAC   +   +   I
Sbjct: 114 NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 173

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
              +   G+  DIFV N++I     C                                 G
Sbjct: 174 LGHVLHLGFDSDIFVSNAVIHLLVSC---------------------------------G 200

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
           +L  AR++FD+   RD VSWN++++GY   G +  A +LF+ + ++ +VSW+TMV GY++
Sbjct: 201 DLDGARKMFDKSCVRDLVSWNSMINGYC--GNLESARKLFDSMTNKTMVSWTTMVVGYAQ 258

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++MA  LFD MP K +VPW  +I GY      KEA  L+++M+   + PD+ T++S 
Sbjct: 259 SGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 318

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L+AC++ G L +G+ +H  I K+    N  +  AL+DMYAKCG +  A+ VF  +  ++ 
Sbjct: 319 LSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNS 378

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++W A++ GLA+HG    A+  FS M D    PD+ TF+G+L AC H G +++G +YF  
Sbjct: 379 LTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQ 438

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M   + + P+++HY CM+DLLGR+G L+EA  L++SMP+E +A++WG L  ACR H  V 
Sbjct: 439 MSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVL 498

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
           + E     L+++   D G Y +L+N++     W +    R  M++   +K   + S+
Sbjct: 499 MGERAASKLLQMDPHDSGIYVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPDSWSL 555


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 319/576 (55%), Gaps = 15/576 (2%)

Query: 35  QLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           QL A  ++L L   + + +  L+ +     ++  A +VF+++ + DV  +N ++    +N
Sbjct: 87  QLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRN 146

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           +  A A  +   M  +GV  D  T   +L  C       L  ++H    K G  G++FV 
Sbjct: 147 TRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVC 206

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           N+LID Y K G++  + A  +F  M  RD+V+WNS+I+   +GG+++ A  LF  M E  
Sbjct: 207 NALIDVYGKLGML--TEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESG 264

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDMEMA 264
              D ++  ++    A+ G+   A  +   +  R     +I++ + MV  Y+K   ++ A
Sbjct: 265 VCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAA 324

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAE 323
           + +FD +P + +V W  +I+GY + G+A EA R+Y+ M    GLKP  GT +S+L A + 
Sbjct: 325 QKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSY 384

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L  GM++HA   K     +  V   L+D+YAKCG L  AM +F  M ++    WNA+
Sbjct: 385 LGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAI 444

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GL +HG G KAL LFS+M+ E   PD  TFV +L AC+HAG +D+G  +F  M+  YG
Sbjct: 445 IAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYG 504

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I+P  +HY CM+D+LGR+G+L EA   +QSMP++P++ +WG LLGACR H  VE+ +   
Sbjct: 505 IVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVAS 564

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L  L   + G Y ++SN++A  G W+ V  VR  +++   QK  G SS+EV   V  F
Sbjct: 565 QNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVF 624

Query: 564 SVCDQL--HPKSEQIYQMINTLGKDLKPVGHAAKLS 597
               Q   HP+ E+I + ++ L   +K  G+    S
Sbjct: 625 YSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYS 660



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 109/239 (45%), Gaps = 28/239 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q  ++ A  IK  L  D Y+   LI   A C ++  A+ +F  +       +N +I  
Sbjct: 388 LQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAG 447

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
              +   A+A  +F  MQ++ +  D+ T+  LL AC+       G+++F L+Q ++ ++ 
Sbjct: 448 LGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVP 507

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSM-----IAGLVKG 196
              ++        ++D   + G   +  A +   SM  + D   W ++     I G V+ 
Sbjct: 508 IAKHY------TCMVDMLGRAG--QLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEM 559

Query: 197 GELSEARRLFDEMPERDAVSWNTILDG-YAKAGEMNLAFELFEKIPHRNI---VSWSTM 251
           G+++ ++ LF+  PE   V +  ++   YAK G+ +    +   +  +N+     WS+M
Sbjct: 560 GKVA-SQNLFELDPEN--VGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSM 615


>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
          Length = 602

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 309/549 (56%), Gaps = 39/549 (7%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQ--EKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           +V ++NT+IR  V+N L  +   +   MQ    G+  +  T+ +LLKA          + 
Sbjct: 53  NVFVWNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQEVKEGEE 112

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVG--------------------------VSL 170
           +HA + + G+    FV  +L+  Y  CG+VG                          V+ 
Sbjct: 113 VHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVTF 172

Query: 171 AKK---LFMSMGE----RDIVSWNSMIA--GLVKGGELSEARRLFDEMP--ERDAVSWNT 219
            +K   LF +M E     D+V+ +++++  GL+    +++A   F E    E DA   +T
Sbjct: 173 PEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSST 232

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++  Y + G ++ A+  F++ P +NIV W+TM+    +  ++E+ K LF  MP + +V W
Sbjct: 233 LISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSW 292

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +I G+A  G  +EA   + +ME +G+ P+  TL+S L+ACA  G L  G  +HA ++K
Sbjct: 293 NSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDK 352

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                + ++ ++L+DMY+KCG +D A+ +F   T++DL +W +++ GLAMHG+GEKAL  
Sbjct: 353 NDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAMHGRGEKALHY 412

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           FS+MK+    PD  T VGVL AC HAG +D+G  YF SME+ +G++P+VEHYG M+DLLG
Sbjct: 413 FSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLG 472

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R G LKEA  L+  MP+E N IIWG  L ACR HN VEL E     L+ L   DP    M
Sbjct: 473 RMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGLXPRDPWARVM 532

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSN++A    W++   +R ++KK   +K  G SS+EV+  VH F V D  HP   +I  M
Sbjct: 533 LSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCSSIEVNGSVHGFLVGDNSHPCYTEINSM 592

Query: 580 INTLGKDLK 588
           +  + K ++
Sbjct: 593 VEKIEKLMR 601



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 197/430 (45%), Gaps = 50/430 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ L   + + + +++ A +++       +++  L+     C  +G   +VF++++ P +
Sbjct: 98  LKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGL 157

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            L+  +IRA V  +   +A  +F  M+E G+  D      ++ AC       + + +H  
Sbjct: 158 VLWTLIIRAYVCVTFPEKALELFRTMREVGLTPDMVAVSTVVSACGLLGDLGVAKAMHCF 217

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K G   D FV ++LI +Y +CG   +  A + F     ++IV WN+MI   V+   L 
Sbjct: 218 IEKSGIEVDAFVSSTLISTYGECG--SLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLE 275

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-------------- 246
             ++LF  MP+RD VSWN+++ G+A+ G+   A   F ++    +               
Sbjct: 276 LGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACA 335

Query: 247 --------SW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                   +W                 S+++  YSK GD++ A  +F+    + L  WT 
Sbjct: 336 SHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTS 395

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-Y 340
           I+ G A  G  ++A   + +M+EA ++PDD T++ +L+ACA +GLL  G     S+ K +
Sbjct: 396 IVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVF 455

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE----- 394
                      +VD+  + G L  A  +  GM  + + + W A L    +H   E     
Sbjct: 456 GLVPKVEHYGXMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVA 515

Query: 395 --KALGLFSR 402
             + LGL  R
Sbjct: 516 ARRLLGLXPR 525



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 49/231 (21%), Positives = 99/231 (42%), Gaps = 24/231 (10%)

Query: 21  LQNLHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L  L  C +   L+    + A + K D+ RD  +   LI   + C  +  A+++F +   
Sbjct: 328 LSTLSACASHGALDTGAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTR 387

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNW 130
            D+  + +++     +    +A   F  M+E  V  D+ T   +L AC        G  +
Sbjct: 388 RDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWY 447

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           F  ++ +  L+ K  ++G       ++D   + G +  +    + M M   +I+ W + +
Sbjct: 448 FQSMEKVFGLVPKVEHYG------XMVDLLGRMGCLKEAYDLIMGMPMEANEII-WGAFL 500

Query: 191 AGL-----VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFEL 236
           +       V+ GE++ ARRL    P RD  +   + + YA+  + + +  L
Sbjct: 501 SACRVHNNVELGEVA-ARRLLGLXP-RDPWARVMLSNMYAEEAKWDRSMGL 549


>gi|302143938|emb|CBI23043.3| unnamed protein product [Vitis vinifera]
          Length = 539

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 181/521 (34%), Positives = 294/521 (56%), Gaps = 13/521 (2%)

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P++  ++ +I    QN  + +A  +   MQ  G   +  T   +L AC      +L + I
Sbjct: 9   PNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGKEI 68

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + + G+  + FV N L+D Y +C  +G +L  K+F     +++VS+N+MI G  + G
Sbjct: 69  HGYVTRHGFMSNPFVVNGLVDVYRRCADMGSAL--KIFSGFSVKNVVSYNTMIVGYCENG 126

Query: 198 ELSEARRLFDEMP--ERDAVSWNTILDGYA----KAGEMNLAFELFEKIPHRNIVSWSTM 251
            + +A+ LFD+M    +D +SWN+++ GYA    K  ++  A   F+ +  R+  +W+ +
Sbjct: 127 NVEKAKELFDQMELVGKDTISWNSMISGYADNLLKCEDLKAAQLAFDGVTERDTATWNVL 186

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           + GY+    +E  + L  +M      P    W  IISG+ E G  + A RL+ +M+ + L
Sbjct: 187 ISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRLFTEMQTSSL 246

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PD  T+  IL ACA    +  G +VHA   +  ++ + ++  ALVDMYAKCGS+ +AM 
Sbjct: 247 RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAKCGSIKHAMQ 306

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           V+N ++  +LVS NAML   AMHG G++ + LF  M   GF PD  TF+ VL +C HAG 
Sbjct: 307 VYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSVLSSCVHAGA 366

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           ++ G ++F  M   Y + P ++HY C++DLL R+GRL EA  LV+ +P +P++++WG LL
Sbjct: 367 VETGHEFFDLMTY-YNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPDSVMWGALL 425

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           G C     VEL E   + LI L+ ++ GNY +L+N++A  G W+ +   R  +K     K
Sbjct: 426 GGCVIWGNVELGEIAAESLIELEPNNTGNYVLLANLYAYAGRWHDLDRTRQMIKDRGMHK 485

Query: 548 PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
             G S +E   ++H F  CD+ H K+E IY  ++ L   ++
Sbjct: 486 SPGCSWIEDREDIHVFLSCDKSHEKTEDIYTTLDNLNTHMR 526



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/438 (21%), Positives = 169/438 (38%), Gaps = 87/438 (19%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           ++A  +    R L   L    + +NLN  K++   + +     +P++   L+     C  
Sbjct: 37  MQAAGFEPNARTLASVLPACARLQNLNLGKEIHGYVTRHGFMSNPFVVNGLVDVYRRCAD 96

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           MG A+K+F+     +V  YNT+I    +N    +A  +F  M+  G              
Sbjct: 97  MGSALKIFSGFSVKNVVSYNTMIVGYCENGNVEKAKELFDQMELVG-------------- 142

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS----KCGVVGVSLAKKLFMSMGE 180
                                   D    NS+I  Y+    KC    +  A+  F  + E
Sbjct: 143 -----------------------KDTISWNSMISGYADNLLKCE--DLKAAQLAFDGVTE 177

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFEL 236
           RD  +WN +I+G     +L   + L  +M     E +  +WN I+ G+ + G   LA  L
Sbjct: 178 RDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNELALRL 237

Query: 237 FEKIPHRNI--------------VSWSTMVWG-------------------------YSK 257
           F ++   ++                 +T+  G                         Y+K
Sbjct: 238 FTEMQTSSLRPDIYTVGIILPACARLATIARGKQVHAHSIRQGYELDVHIGAALVDMYAK 297

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A  +++R+    LV    +++ YA  G   E   L+  M   G +PD  T +S+
Sbjct: 298 CGSIKHAMQVYNRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFRPDHVTFLSV 357

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-D 376
           L++C  +G +  G +    +  Y    +      +VD+ ++ G LD A  +   + +K D
Sbjct: 358 LSSCVHAGAVETGHEFFDLMTYYNVTPSLKHYTCIVDLLSRAGRLDEAYELVKKIPRKPD 417

Query: 377 LVSWNAMLYGLAMHGQGE 394
            V W A+L G  + G  E
Sbjct: 418 SVMWGALLGGCVIWGNVE 435



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
           +K +LVSW+A++ G A +G  ++AL L  RM+  GF P+  T   VL AC     ++ G 
Sbjct: 7   SKPNLVSWSAVIGGFAQNGYDKEALELLCRMQAAGFEPNARTLASVLPACARLQNLNLGK 66

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACR 491
           +    + R +G +        ++D+  R   +  AL++     V+ N + + T++ G C 
Sbjct: 67  EIHGYVTR-HGFMSNPFVVNGLVDVYRRCADMGSALKIFSGFSVK-NVVSYNTMIVGYCE 124

Query: 492 KHNAVELAEEVLDCLIRLKGSD 513
             N VE A+E+ D  + L G D
Sbjct: 125 NGN-VEKAKELFD-QMELVGKD 144


>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
          Length = 551

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 185/582 (31%), Positives = 314/582 (53%), Gaps = 72/582 (12%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R+L +  +  L  C       ++   +++L + +  Y+A +++      R++  A +VF 
Sbjct: 11  RQLEDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFA 70

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------QEKGVFTDNFTYPFLLKACN 126
            ++DP++HL+N +I+A  QN  +  A  V++ M        +     D FTYPF      
Sbjct: 71  QVRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF------ 124

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                        L+  CG                  G   + L K++            
Sbjct: 125 -------------LLKACG------------------GTAALELGKQVHTH--------- 144

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
                 +V+ G             +  A+  N++++ Y +AG++ LA ++F+++  R++V
Sbjct: 145 ------VVRSG------------CDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVV 186

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           SW+ ++  +++ G M  A  LF+ MP KT+V WT ++SGY   G    A   +  M+  G
Sbjct: 187 SWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEG 246

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            +PDD +++++L ACA+ G L LG  ++A   ++    +T++CNAL++MYAKCG +D A+
Sbjct: 247 FEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQAL 306

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHA 425
            +F+GM  KD++SW+ ++ GLA HG+  +A+ LF+ M+ EG   P+  TFVG+L AC++A
Sbjct: 307 QLFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYA 366

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +D+G+ +F  M   YG+ P VEHYGC++DLLGRSG+++ AL LV+ MPV  +A +WG+
Sbjct: 367 GLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGS 426

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LL ACR H  V+ A    + L+ L+  D GN  ML+N++AA   W+ VA+ R  ++    
Sbjct: 427 LLSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSM 486

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           +K  G S +EV N V EF   + L  +   +  +++ L   L
Sbjct: 487 RKTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHL 528


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 315/584 (53%), Gaps = 14/584 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +QL A  IK     D  +   ++   A    +  A + F  + +  V   N ++  
Sbjct: 253 LSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVG 312

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+  L A+A ++F  M   G+  D  +   +  AC     +     +H L  K G+  D
Sbjct: 313 LVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVD 372

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V N+++D Y KC    +  A  +F  M +RD VSWN++IA L +     +     +EM
Sbjct: 373 VCVRNAILDLYGKCK--ALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEM 430

Query: 210 ----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-----VSWSTMVWGYSKDGD 260
                E D  ++ ++L   A    +     +  K     +     VS ST+V  Y K G 
Sbjct: 431 LRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS-STVVDMYCKCGM 489

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  A+ L DR+  + LV W  IISG++    ++EA + + +M + G+KPD  T  ++L  
Sbjct: 490 ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDT 549

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA    + LG ++H  I K     +  + + LVDMYAKCG++ +++ +F    K D VSW
Sbjct: 550 CANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSW 609

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NAM+ G A+HGQG +AL +F RM+     P+  TFV VL AC+H G +D G +YFY M  
Sbjct: 610 NAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDGCRYFYLMTS 669

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y + PQ+EH+ CM+D+LGRS   +EAL+ ++SMP+E +A+IW TLL  C+    VE+AE
Sbjct: 670 RYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICKIRQDVEVAE 729

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                ++RL   D   Y +LSN++A +G W  V+  R  M++ R +K  G S +EV +E+
Sbjct: 730 TAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGCSWIEVQSEM 789

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH--AAKLSAEIGE 602
           H F   D++HP+S ++Y+M+N L  ++K  G+  A+ L AE+ E
Sbjct: 790 HGFLAGDKVHPRSREVYEMLNNLIVEMKLSGYEPASALFAEVDE 833



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 195/455 (42%), Gaps = 44/455 (9%)

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
           T  F++ + L A  G++     Q  HA +   G+    FV N L+  Y++CG  G + A+
Sbjct: 2   TATFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCG--GAAHAR 59

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG---- 228
            +F  M  RD VSWN+M+      G+   A  LF  MP+ D VSWN +L GY + G    
Sbjct: 60  GVFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRD 119

Query: 229 EMNLAFELFEK--IPHR---------------------------------NIVSWSTMVW 253
            + L+ E+  +   P R                                 ++ + S +V 
Sbjct: 120 SVGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVD 179

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y K   +E A   F  M  +  V W   I+G  +         L+ QM+  GL      
Sbjct: 180 MYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPA 239

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
             S+  +CA    L    ++HA   K +F  +  V  A+VD+YAK  SL +A   F  + 
Sbjct: 240 YASVFRSCAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLP 299

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
              + + NAM+ GL   G G +AL LF  M   G G D  +  GV  AC       +G+Q
Sbjct: 300 NHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQ 359

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             + +    G    V     ++DL G+   L EA  + Q M  + +++ W  ++ A  ++
Sbjct: 360 -VHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEME-QRDSVSWNAIIAALEQN 417

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
              E     L+ ++R  G +P ++T  S + A  G
Sbjct: 418 ECYEDTIAYLNEMLRY-GMEPDDFTYGSVLKACAG 451



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 234/525 (44%), Gaps = 33/525 (6%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           PT F    LL    Q   +C      + +F     +   RD      ++++ A     G 
Sbjct: 37  PTTFVSNCLL----QMYARCGGAAHARGVF----DVMPHRDTVSWNTMLTAYAHAGDTGA 88

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F  + DPDV  +N L+    Q  +   +  + ++M  +GV  D  T   LLKAC G
Sbjct: 89  AASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVLLKACGG 148

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   IHA+  K G   D+   ++L+D Y KC  +  +L  + F  MGER+ VSW 
Sbjct: 149 LEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDAL--RFFHGMGERNSVSWG 206

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELF-----E 238
           + IAG V+  + +    LF +M          ++ ++    A    ++ A +L       
Sbjct: 207 AAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHAHAIKN 266

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           K     +V  + +V  Y+K   +  A+  F  +P  T+     ++ G    G+  EA +L
Sbjct: 267 KFSADRVVG-TAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQL 325

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +  M  +G+  D  +L  + +ACAE      G++VH    K  F  +  V NA++D+Y K
Sbjct: 326 FQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGK 385

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           C +L  A  VF  M ++D VSWNA++  L  +   E  +   + M   G  PD +T+  V
Sbjct: 386 CKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSV 445

Query: 419 LCACTHAGFIDKG-VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-- 475
           L AC     ++ G V +  +++   G+   V     ++D+  + G + EA +L   +   
Sbjct: 446 LKACAGLQSLEYGSVVHGKAIKSGLGLDAFVS--STVVDMYCKCGMITEAQKLHDRIGGQ 503

Query: 476 --VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
             V  N+II G  L   +   A +   E+LD      G  P ++T
Sbjct: 504 ELVSWNSIISGFSLNK-QSEEAQKFFSEMLDI-----GVKPDHFT 542



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 161/341 (47%), Gaps = 21/341 (6%)

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G+ + AR L         VS N +L  YA+ G    A  +F+ +PHR+ VSW+TM+  Y+
Sbjct: 23  GQAAHARMLVSGFMPTTFVS-NCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYA 81

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             GD   A  LF  MP   +V W  ++SGY ++GM +++  L  +M   G+ PD  TL  
Sbjct: 82  HAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAV 141

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L AC     L LG+++HA   K   + +    +ALVDMY KC SL++A+  F+GM +++
Sbjct: 142 LLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERN 201

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF- 435
            VSW A + G   + Q  + L LF +M+  G G  +  +  V  +C     +    Q   
Sbjct: 202 SVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTARQLHA 261

Query: 436 ------YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
                 +S +R  G          ++D+  ++  L +A R   S+P          ++G 
Sbjct: 262 HAIKNKFSADRVVGT--------AIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGL 313

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNIFAATGD 529
            R      L  E L     +  S  G +   LS +F+A  +
Sbjct: 314 VR----TGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAE 350



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 176/367 (47%), Gaps = 12/367 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K   Q  Q+    IK     D  +   ++     C+ +  A  VF +++  D   +N +I
Sbjct: 352 KGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAII 411

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A  QN           +M   G+  D+FTY  +LKAC G        ++H    K G  
Sbjct: 412 AALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLG 471

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D FV ++++D Y KCG+  ++ A+KL   +G +++VSWNS+I+G     +  EA++ F 
Sbjct: 472 LDAFVSSTVVDMYCKCGM--ITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFS 529

Query: 208 EMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDG 259
           EM +     D  ++ T+LD  A    + L  ++  +I  + ++      ST+V  Y+K G
Sbjct: 530 EMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCG 589

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           +M  + L+F++      V W  +I GYA  G   EA  ++++M++A + P+  T +++L 
Sbjct: 590 NMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLR 649

Query: 320 ACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           AC+  GLL  G +  +   ++Y+ +        +VD+  +      A+     M  + D 
Sbjct: 650 ACSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADA 709

Query: 378 VSWNAML 384
           V W  +L
Sbjct: 710 VIWKTLL 716


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 190/574 (33%), Positives = 322/574 (56%), Gaps = 14/574 (2%)

Query: 36  LFAQIIKLD-LQRDPYIAPKLISSLALCR-QMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +F  +IK   LQ D  +   LI      R  +  A KVF  + + +   +  +I   +Q 
Sbjct: 190 IFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQF 249

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  +FLDM   G   D FT   ++ AC       L Q +H+   + G   D  V 
Sbjct: 250 GYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVG 309

Query: 154 NSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSWNSMIAGLV-KGGELSEARRLFDEMPE 211
             LI+ Y+KC V G +  A+K+F  + + ++ SW +MI G V KGG   EA  LF  M  
Sbjct: 310 CCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMIL 369

Query: 212 RDAV----SWNTILDGYAKAGEMNLAFELFEK-----IPHRNIVSWSTMVWGYSKDGDME 262
              +    ++++ L   A    + +  ++F           N V+ ++++  Y++ G ++
Sbjct: 370 THVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVA-NSLISMYARSGRID 428

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+  FD +  K L+ +  +I  YA+   ++EA  L++++E+ G+     T  S+L+  A
Sbjct: 429 DARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAA 488

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
             G +G G ++HA + K   K N +VCNAL+ MY++CG++++A  VF  M  ++++SW +
Sbjct: 489 SIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTS 548

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++ G A HG   +AL LF +M +EG  P++ T++ VL AC+H G +++G ++F SM  ++
Sbjct: 549 IITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEH 608

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G++P++EHY C++D+LGRSG L EA++ + SMP + +A++W T LGACR H  +EL +  
Sbjct: 609 GVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHA 668

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              +I  +  DP  Y +LSN++A+   W++V+N+R  MK+    K +G S VEV+N+VH+
Sbjct: 669 AKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHK 728

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           F V D  HPK+ +IY  +  L   +K +G+   L
Sbjct: 729 FYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNL 762



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 231/503 (45%), Gaps = 18/503 (3%)

Query: 39  QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQNSLNA 97
           ++ + DLQ D      LIS  + C Q   A  +F  +    D+  ++ ++     N++  
Sbjct: 91  KLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGF 150

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF-GDIFVPNSL 156
           +A   F+DM E G + + + +    +AC+   +  +   I   + K GY   D+ V   L
Sbjct: 151 RALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGL 210

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ER 212
           ID + K G   +  A K+F  M ER+ V+W  MI  L++ G   EA  LF +M     E 
Sbjct: 211 IDMFVK-GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEP 269

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-------SWSTMVWGYSKDGDMEMAK 265
           D  + + ++   A    + L  +L  +     +            M    S DG M  A+
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329

Query: 266 LLFDRMPAKTLVPWTIIISGYAEK-GMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            +FD++    +  WT +I+GY +K G  +EA  L+  M    + P+  T  S L ACA  
Sbjct: 330 KIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANL 389

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L +G +V     K  F     V N+L+ MYA+ G +D+A   F+ + +K+L+S+N ++
Sbjct: 390 AALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVI 449

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
              A +   E+AL LF+ ++D+G G   +TF  +L      G I KG Q    + +  G+
Sbjct: 450 DAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GL 508

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
                    +I +  R G ++ A ++ + M  + N I W +++    KH     A E+  
Sbjct: 509 KLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKHGFATQALELFH 567

Query: 505 CLIRLKGSDPGNYTMLSNIFAAT 527
            ++  +G  P   T ++ + A +
Sbjct: 568 KMLE-EGVRPNEVTYIAVLSACS 589



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 196/465 (42%), Gaps = 87/465 (18%)

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
           + N    +A      M  +G   D  TY   LK C     F +  ++H  + +     D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
              NSLI  YSKCG      A  +F  MG  RD++SW++M++          A   F +M
Sbjct: 102 VTLNSLISLYSKCG--QWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 210 PER-------------------------DAVSWNTILDGYAKA----------------G 228
            E                          D++    I  GY ++                G
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRG 219

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
           ++  AF++FEK+P RN V+                               WT++I+   +
Sbjct: 220 DLVSAFKVFEKMPERNAVT-------------------------------WTLMITRLMQ 248

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G A EA  L+  M  +G +PD  TL  +++ACA   LL LG ++H+   ++    +  V
Sbjct: 249 FGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCV 308

Query: 349 CNALVDMYAKC---GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH-GQGEKALGLFSRMK 404
              L++MYAKC   GS+  A  +F+ +   ++ SW AM+ G     G  E+AL LF  M 
Sbjct: 309 GCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMI 368

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-YSMERDYGILPQVEHYGCMIDLLGRSGR 463
                P+ +TF   L AC +   +  G Q F ++++  +  +  V +   +I +  RSGR
Sbjct: 369 LTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVAN--SLISMYARSGR 426

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLD 504
           + +A R    +  E N I + T++ A  K+     A+EL  E+ D
Sbjct: 427 IDDA-RKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIED 470



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G   +A    + M   G  PD  T    L  C  +    +G  VH  + +   + ++   
Sbjct: 45  GRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTL 104

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
           N+L+ +Y+KCG  + A S+F  M + +DL+SW+AM+   A +  G +AL  F  M + G+
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGY 164

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MIDLL--GRSGRLK 465
            P++Y F     AC+ A F+  G   F  + +  G L      GC +ID+   GR G L 
Sbjct: 165 YPNEYCFAAATRACSTAEFVSVGDSIFGFVIKT-GYLQSDVCVGCGLIDMFVKGR-GDLV 222

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSNI 523
            A ++ + MP E NA+ W  ++    +      A E +D  + +   G +P  +T LS +
Sbjct: 223 SAFKVFEKMP-ERNAVTWTLMITRLMQFG---YAGEAIDLFLDMIFSGYEPDRFT-LSGV 277

Query: 524 FAATGD 529
            +A  +
Sbjct: 278 ISACAN 283



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 138/297 (46%), Gaps = 18/297 (6%)

Query: 23  NLHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
            L  C NL   +   Q+F   +KL       +A  LIS  A   ++  A K F+ + + +
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           +  YNT+I A  +N  + +A  +F +++++G+    FT+  LL            + IHA
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   +  V N+LI  YS+CG   +  A ++F  M +R+++SW S+I G  K G  
Sbjct: 502 RVIKSGLKLNQSVCNALISMYSRCG--NIESAFQVFEDMEDRNVISWTSIITGFAKHGFA 559

Query: 200 SEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-----SWST 250
           ++A  LF +M E     + V++  +L   +  G +N  ++ F+ +   + V      ++ 
Sbjct: 560 TQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYAC 619

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKG---MAKEAARLYDQME 303
           +V    + G +  A    + MP K   + W   +      G   + K AA++  + E
Sbjct: 620 IVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQE 676


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 204/635 (32%), Positives = 327/635 (51%), Gaps = 59/635 (9%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           + +P+   T+     LL   +    +   L   +++F +I      R+ +    L+S+ A
Sbjct: 44  LKSPVAGETF-----LLNTLVSTYARLGRLRDARRVFDEIP----LRNTFSYNALLSAYA 94

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN--AQAFRVFLDMQEKGVFTDNFTY 118
              +   A  +F  I DPD   YN ++ A  ++     A A R    M       + +++
Sbjct: 95  RLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSF 154

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
              L AC  +      + +H L+ +  +  D+ + ++L+D Y+KC       A+++F +M
Sbjct: 155 ASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCE--RPEDARRVFDAM 212

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEM------PER-------------------- 212
            ER++VSWNS+I    + G + EA  LF EM      P+                     
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGR 272

Query: 213 --------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
                         D V  N ++D YAK G    A  +F+ +P R+IVS ++++ GY+K 
Sbjct: 273 QVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKS 332

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
            ++E A+++F +M  K ++ W ++I+ YA+ G  +EA RL+ Q++   + P   T  ++L
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392

Query: 319 AACAESGLLGLGMKVHASINK--YRF----KCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            AC     L LG + H  + K  +RF    + +  V N+LVDMY K GS+D+   VF  M
Sbjct: 393 NACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             +D VSWNAM+ G A +G+ + AL LF RM      PD  T +GVL AC H+G +D+G 
Sbjct: 453 AARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR 512

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +YF+SM  D+GI P  +HY CM+DLLGR+G LKEA  L+  MP+EP++++W +LLGACR 
Sbjct: 513 RYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRL 572

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VEL E     L  L   + G Y +LSN++A  G W +V  VR  MK     K  G S
Sbjct: 573 HKNVELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCS 632

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
            +E+  +++ F   D+ HP   +I+  +  +  ++
Sbjct: 633 WIEIGRKMNVFLARDKRHPCRNEIHNTLRIIQMEM 667



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/234 (23%), Positives = 89/234 (38%), Gaps = 48/234 (20%)

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSL------------------------------- 362
           HA I K      T + N LV  YA+ G L                               
Sbjct: 40  HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRP 99

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE--KALGLFSRMKDEGFGPDKYTFVGVLC 420
           D A ++F  +   D  S+NA++  LA HG+G    AL   + M  + F  + Y+F   L 
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALS 159

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEH------YGCMIDLLGRSGRLKEALRLVQSM 474
           AC        G Q        +G++ +  H         ++D+  +  R ++A R+  +M
Sbjct: 160 ACAAEKDSRTGEQV-------HGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAM 212

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           P E N + W +L+  C + N       +L   +   G  P   T+ S + A  G
Sbjct: 213 P-ERNVVSWNSLI-TCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAG 264


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 188/557 (33%), Positives = 306/557 (54%), Gaps = 38/557 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +H CK+    + + AQI++  +     +A +L+S  +L +    ++ +F + ++ +  + 
Sbjct: 36  IHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVL 94

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N LIR   +N+    + R F+ M   GV  D  T+PF+LK+ +   +  L + +HA   K
Sbjct: 95  NALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLK 154

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                D FV  SL+D Y+K G                                 +L  A 
Sbjct: 155 NFVDCDSFVRLSLVDMYAKTG---------------------------------QLKHAF 181

Query: 204 RLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
           ++F+E P+R      + WN +++GY +A +M++A  LF  +P RN  SWST++ GY   G
Sbjct: 182 QVFEESPDRIKKESILIWNVLINGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSG 241

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           ++  AK LF+ MP K +V WT +I+G+++ G  + A   Y +M E GLKP++ T+ ++L+
Sbjct: 242 ELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLS 301

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC++SG LG G+++H  I     K +  +  ALVDMYAKCG LD A +VF+ M  KD++S
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILS 361

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W AM+ G A+HG+  +A+  F +M   G  PD+  F+ VL AC ++  +D G+ +F SM 
Sbjct: 362 WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMR 421

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DY I P ++HY  ++DLLGR+G+L EA  LV++MP+ P+   W  L  AC+ H     A
Sbjct: 422 LDYAIEPTLKHYVLVVDLLGRAGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRA 481

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E V   L+ L     G+Y  L    A+ G+   V   RL ++K   ++  G S +E+D +
Sbjct: 482 ESVSQNLLELDPELCGSYIFLDKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQ 541

Query: 560 VHEFSVCDQLHPKSEQI 576
           +++FS  D  H  +++I
Sbjct: 542 LNKFSAGDYSHKLTQEI 558


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 204/600 (34%), Positives = 307/600 (51%), Gaps = 67/600 (11%)

Query: 56  ISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115
           I+ LA    M  A   F  +       YN L+    +N L   A RVF  M  +    D 
Sbjct: 24  IARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTR----DL 79

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG-------- 167
            +Y  L+   + +   H +    A +    Y   +    SL+  Y + G++         
Sbjct: 80  ASYNALISGLSLRR--HTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQ 137

Query: 168 ---------------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
                                V  A+KLF  M  +D+V+W +M++G  + G + EAR LF
Sbjct: 138 MPERNHISYTVLLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLF 197

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           DEMP+R+ VSW  ++ GYA+ G++NLA +LFE +P RN VSW+ M++GY + G +E A+ 
Sbjct: 198 DEMPKRNVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEE 257

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA--------------------- 305
           LF+ MP   L     +I G+ ++GM   A  ++D+M E                      
Sbjct: 258 LFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEA 317

Query: 306 ----------GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
                     G++P+  ++ISIL  CA   +L  G +VH ++ +  F  +    +AL+ M
Sbjct: 318 LSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYAVSALITM 377

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y KCG+LD A  VF+    KD+V WN+M+ G A HG GE+AL +F  M+  G  PD  T+
Sbjct: 378 YIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITY 437

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           +G L AC++ G + +G   F SM    GI P +EHY CM+DLLGR+G + EAL L+++MP
Sbjct: 438 IGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMP 497

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           VEP+A+IWG L+GACR H   E+AE     L+ L+  + G Y +LS+I+ ++G W   +N
Sbjct: 498 VEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGNAGPYVLLSHIYTSSGRWEDASN 557

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL-HPKSEQIYQMINTLGKDLKPVGHAA 594
           +R  +      K  G S +E D  VH F   D L H +   I +M+  L   L   G++A
Sbjct: 558 MRKFISSRHLNKSLGCSWIEYDKRVHLFKSGDVLAHQEHASILKMLEKLDGLLMESGYSA 617



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 154/363 (42%), Gaps = 55/363 (15%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           +V  N+ IA L + G +  AR  F+ MP R   S+N +L GY +    + A  +F ++P 
Sbjct: 17  VVDANARIARLARTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPT 76

Query: 243 RN---------------------------------IVSWSTMVWGYSKDGDMEMAKLLFD 269
           R+                                 +VS+++++ GY + G +  A  LF 
Sbjct: 77  RDLASYNALISGLSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFR 136

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           +MP +  + +T+++ G+ + G   EA +L+D+M       D     ++L+   + G +  
Sbjct: 137 QMPERNHISYTVLLGGFLDAGRVDEARKLFDEMP----AKDVVAWTAMLSGYCQVGRVDE 192

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
              +   + K     N     A+V  YA+ G ++ A  +F  M +++ VSW AML+G   
Sbjct: 193 ARTLFDEMPKR----NVVSWTAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQ 248

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQV 448
            G+ E A  LF+ M D           G++      G +D     F  M ERD G     
Sbjct: 249 AGRIEDAEELFNAMPDHPLAACN----GMIVGFGQQGMVDAAKSVFDRMCERDDGT---- 300

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
             +  +I    ++  L EAL   + M    + PN     ++L  C     ++   EV   
Sbjct: 301 --WSAIIKAYEQNEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGA 358

Query: 506 LIR 508
           ++R
Sbjct: 359 MLR 361



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 88/192 (45%), Gaps = 18/192 (9%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++   +++     D Y    LI+    C  +  A +VF+  +  DV ++N++I  
Sbjct: 349 LDYGREVHGAMLRRSFDMDIYAVSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITG 408

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
             Q+ L  +A  +F DM+  G+  D  TY   L AC+       G++ F+ ++       
Sbjct: 409 YAQHGLGEEALHIFDDMRLAGMVPDGITYIGALTACSYTGKVKEGRDIFNSMRT------ 462

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG--LVKGGELS 200
           K G    +     ++D   + G+V  +L     M + E D V W +++    + K  E++
Sbjct: 463 KSGIKPGLEHYACMVDLLGRAGLVDEALYLIKTMPV-EPDAVIWGALMGACRMHKNAEIA 521

Query: 201 E--ARRLFDEMP 210
           E  A++L +  P
Sbjct: 522 EISAKKLLELEP 533


>gi|357142117|ref|XP_003572465.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 613

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/618 (32%), Positives = 324/618 (52%), Gaps = 65/618 (10%)

Query: 8   PTWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66
           P   S R   E +L  L  +C +  Q +QL A+ + L   R  ++A KL+ + A    + 
Sbjct: 4   PPRLSARADEENRLVGLAARCASARQLEQLHARAVLLGHARSSFVAAKLVRAFADLGHLR 63

Query: 67  LAIKVFNDIQDPD----------VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF 116
            A  V                  V LY  + R C                   GV    F
Sbjct: 64  AARAVAAVRAHSQSGSSAAARDAVALYAQMHRGC------------------PGVRPLTF 105

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T   +LKA   +      + +H  ++K G+  D  +  +L+D Y++CG   +  A+++F 
Sbjct: 106 TVSSVLKAAARREMLREGEQVHVHVFKNGFQTDERIATTLVDLYARCG--RLDDARRVFD 163

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA---------------------- 214
            +  +D   +N+MIA  ++ GE+  A  LF+ MPER+                       
Sbjct: 164 RLLVKDAQLYNTMIAAYMEAGEVELAEELFEVMPERNTHTLMEMVGGYSARGDMDSAKHV 223

Query: 215 ----------VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW-GYSKDGDMEM 263
                     V    ++ G+AK G ++ A  +F+ +  R++ +W+ M+   Y+K G +E 
Sbjct: 224 FEMANGVVNMVLCTAMISGFAKTGSVDDARSVFDGMRQRDVATWNVMIGVMYAKCGLVED 283

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +FD MP + +V WT +ISGY + G  K+A +L+  M+ +G+K DD T+ +++++C +
Sbjct: 284 ARKVFDAMPERNVVCWTSMISGYTQVGKFKQAVKLFRDMQISGVKADDATIATVVSSCGQ 343

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L LG  VHA  + +      +V N+L+DMY+KCG +  A  +F G+ K+D  SW  M
Sbjct: 344 MGALDLGRYVHAYCDVHGLGKGISVKNSLIDMYSKCGDIKKAHEIFRGLVKRDDFSWTVM 403

Query: 384 LYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           + G A++G   +AL LF++M++EG   P++ TF+GVL +C+H G +++G  +F+ M + Y
Sbjct: 404 IMGFAVNGLSGEALDLFAQMEEEGEVMPNEITFLGVLTSCSHGGLVEQGYHHFHRMSKVY 463

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P++EHYGCM+DLLGR+  L EA + ++ MP+ P+  IW +LL ACR    V LAE V
Sbjct: 464 GIAPRIEHYGCMVDLLGRAKLLAEAEQFIEEMPIAPDVAIWRSLLFACRARGEVGLAEYV 523

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + +  L+ S  G   +LSN++A T  W  V  VR  M ++R  K  G S +EV+   HE
Sbjct: 524 AERVEELEPSRCGGNVLLSNVYATTSRWVDVNKVRTGMGRSRVSKRPGCSVIEVNGCAHE 583

Query: 563 FSVCDQLHPKSEQIYQMI 580
           F   D+ H ++E IY ++
Sbjct: 584 FLSGDETHLETEAIYNIL 601


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 186/533 (34%), Positives = 288/533 (54%), Gaps = 50/533 (9%)

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           A   +  M++  +  D+F  P +LKAC+  +   + + IH    K G   D+FV N+L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN 218
            YS+CG   +  A+ LF  M ERD+VSW++MI   +          LF    +R  VSW 
Sbjct: 153 MYSECG--SLVSARLLFDKMSERDVVSWSTMIRAYIT---------LFYGFSQRSIVSWT 201

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVS------------------------------- 247
            ++ GY +  ++     LF ++   N+                                 
Sbjct: 202 AMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN 261

Query: 248 --------WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
                    + +V  Y K G++  A+ +FD M  K ++ WT +IS YA+      A +L+
Sbjct: 262 GFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLF 321

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM + G++P++ T++S+L+ CA +G L +G   HA I+K   + +  +  AL+DMYAKC
Sbjct: 322 VQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKC 381

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G +  A  +F+    +D+ +WN M+ G  MHG GEKAL LF+ M+  G  P+  TF+G L
Sbjct: 382 GDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGAL 441

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+HAG + +G   F  M  D+G++P+VEHYGCM+DLLGR+G L EA ++++SMPV PN
Sbjct: 442 HACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPN 501

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
             IWG +L AC+ H    + E     L+ L+  + G   ++SNI+AA   WN VA +R  
Sbjct: 502 IAIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKA 561

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +K T  +K  G SS+EV+  VH+F + D  HP  E+I +M+  + K LK  G+
Sbjct: 562 VKDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGY 614



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 184/389 (47%), Gaps = 34/389 (8%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV-- 91
           K++    +K  L  D ++   L+   + C  +  A  +F+ + + DV  ++T+IRA +  
Sbjct: 129 KEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITL 188

Query: 92  -----QNSLNA---------------QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
                Q S+ +               +  R+F+ M E+ VF ++ T   L+ +C      
Sbjct: 189 FYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAV 248

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
            L + +HA I + G+   + +  +L+D Y KCG   +  A+ +F SM  +D+++W +MI+
Sbjct: 249 QLGKRLHAYILRNGFGMSLALATALVDMYGKCG--EIRSARAIFDSMKNKDVMTWTAMIS 306

Query: 192 GLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR---- 243
              +   +  A +LF +M +     + ++  ++L   A  G +++       I  +    
Sbjct: 307 AYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEV 366

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           +++  + ++  Y+K GD+  A+ LF     + +  W ++++GY   G  ++A +L+ +ME
Sbjct: 367 DVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEME 426

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSL 362
             G+KP+D T I  L AC+ +GL+  G  +    I+ +           +VD+  + G L
Sbjct: 427 TLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLL 486

Query: 363 DNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
           D A  +   M    ++  W AML    +H
Sbjct: 487 DEAYKMIESMPVTPNIAIWGAMLAACKIH 515



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 129/278 (46%), Gaps = 17/278 (6%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K+L A I++        +A  L+     C ++  A  +F+ +++ DV  +  +I A  Q 
Sbjct: 252 KRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQA 311

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           +    AF++F+ M++ GV  +  T   LL  C       + +  HA I K G   D+ + 
Sbjct: 312 NCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILK 371

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            +LID Y+KCG   +S A++LF    +RDI +WN M+AG    G   +A +LF EM E  
Sbjct: 372 TALIDMYAKCG--DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEM-ETL 428

Query: 214 AVSWNTI-----LDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDMEM 263
            V  N I     L   + AG +     LFEK+ H       +  +  MV    + G ++ 
Sbjct: 429 GVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDE 488

Query: 264 AKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAAR 297
           A  + + MP    +  W  +++    +    M + AAR
Sbjct: 489 AYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELAAR 526


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 199/584 (34%), Positives = 320/584 (54%), Gaps = 13/584 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C  L   +++     KL  Q + ++A  LI   +     G+A  +F+D+   D+  +
Sbjct: 225 LKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 284

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I   +QN   AQA  V  +M+ +G+  +  T   +L  C          +IH  + K
Sbjct: 285 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK 344

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+FV N+LI+ Y+K G   +  A+K F  M   D+VSWNS+IA   +  +   A 
Sbjct: 345 HGLEFDLFVSNALINMYAKFG--NLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWG 254
             F +M     + D ++  ++    A++ +   +  +   I  R     ++V  + +V  
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGT 313
           Y+K G ++ A  +F+ +P K ++ W  +I+GYA+ G+A EA  +Y  MEE   + P+ GT
Sbjct: 463 YAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGT 522

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +SIL A A  G L  GMK+H  + K     +  V   L+D+Y KCG L +AMS+F  + 
Sbjct: 523 WVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP 582

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           ++  V+WNA++    +HG  EK L LF  M DEG  PD  TFV +L AC+H+GF+++G +
Sbjct: 583 QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-K 641

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           + + + ++YGI P ++HYGCM+DLLGR+G L+ A   ++ MP++P+A IWG LLGACR H
Sbjct: 642 WCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIH 701

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +EL +   D L  +   + G Y +LSNI+A  G W  V  VR   ++   +K  G S+
Sbjct: 702 GNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWST 761

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +EV+ +V  F   +Q HPK ++IY+ +  L   +K +G+    S
Sbjct: 762 IEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYS 805



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 192/404 (47%), Gaps = 27/404 (6%)

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
             + +HAL+   G    IF+   L++ Y+  G   VSL++  F  + ++D+ +WNSMI+ 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLG--DVSLSRCTFDQIPQKDVYAWNSMISA 191

Query: 193 LVKGGELSEARRLFDEMPERDAV------------SWNTILDGYA-KAGEMNLAFELFEK 239
            V  G   EA   F ++     +            +  T++DG         L F+    
Sbjct: 192 YVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQW--- 248

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
               N+   ++++  YS+ G   +A+ LFD MP + +  W  +ISG  + G A +A  + 
Sbjct: 249 ----NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVL 304

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           D+M   G+K +  T++SIL  C + G +   M +H  + K+  + +  V NAL++MYAK 
Sbjct: 305 DEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKF 364

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV- 418
           G+L++A   F  M   D+VSWN+++     +     A G F +M+  GF PD  T V + 
Sbjct: 365 GNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLA 424

Query: 419 -LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
            + A +      + V  F  M R + ++  V     ++D+  + G L  A ++ + +PV+
Sbjct: 425 SIVAQSRDCKNSRSVHGFI-MRRGW-LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVK 482

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            + I W TL+    ++     A EV   +   K   P   T +S
Sbjct: 483 -DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 525


>gi|115487922|ref|NP_001066448.1| Os12g0233200 [Oryza sativa Japonica Group]
 gi|77553539|gb|ABA96335.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648955|dbj|BAF29467.1| Os12g0233200 [Oryza sativa Japonica Group]
          Length = 704

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 209/640 (32%), Positives = 335/640 (52%), Gaps = 55/640 (8%)

Query: 2   SAPIRAPTWFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL 59
           +A +  P W + R L+     L  L  C +  +  QL A +    L    + A +L++  
Sbjct: 18  AAVLPRPAWNTNRNLVVTHPLLSLLESCASFRRLLQLHALLTVTGLAAHRFPASRLLAFC 77

Query: 60  ALCR---QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF 116
           AL         A  +      P+ ++  T++R  ++  L A+A  +F  +    +  D  
Sbjct: 78  ALSTPPRLAHAAAILARASPGPNAYMLGTMMRGFLRARLPARALGLFRRVVRDRLPADAR 137

Query: 117 TYPFLLKACNGKNWFHLV------QMIHALIYKCGYFGD-IFVPNSLIDSYSKCGVVGVS 169
           T+ F +KA                + IH    KCG+ G+ + V N+L+  Y+      + 
Sbjct: 138 TFVFAVKAAAAAAESEHGGTPSGGEAIHCAALKCGFVGESVLVGNALVHFYANHK--SLD 195

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-----ERDAVSW------- 217
            A K+F  M ERD+VSW +++ G  + G   EA RLF  M        +AV+        
Sbjct: 196 DAGKVFDEMPERDVVSWTTLVDGYARAGLADEAWRLFCRMVVVGGMRPNAVTLVAAVSAI 255

Query: 218 ----------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                                       N ++D + K G +  A E+F+ +  +++ SW+
Sbjct: 256 GQMGLLAFGIMLHKYVTEGGVARSVNLDNALVDMFGKCGCVRYAREVFDGMEVKDVYSWT 315

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           +MV  Y+K GD+E A+ LF  MP + +V W+ +I+ Y++    +EA  L+ +M  AG+ P
Sbjct: 316 SMVNAYAKCGDLESAEQLFKDMPRRNVVSWSCMIAAYSQLNQPEEAVWLFREMIAAGVDP 375

Query: 310 DDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
            D TL+S+L+ACA+ G L LG  ++ + I   +     N+ NAL+DM+AKCG +  A  +
Sbjct: 376 IDATLVSVLSACAQLGCLDLGRWIYENYIVSNKIGLTVNLGNALIDMFAKCGDVGEASKL 435

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ M ++++VSWN M+   A+HGQ E+A+ LF ++K E   PD+ TF+G+L +C+H+G +
Sbjct: 436 FDEMAERNVVSWNTMIMAHAVHGQSEEAIRLFEQLKGENIVPDQITFLGLLASCSHSGLV 495

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            +G +YF  ME  Y I P+VEHY CMIDLLG+ G L+EA  + + MP+E +   WG LL 
Sbjct: 496 SEGRRYFKEMEMFYRIEPRVEHYACMIDLLGKVGLLEEAFEVARGMPMEADEAGWGALLN 555

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACR H  VE+   V D L+ L  SD G Y ++S I+A+   W++V  +R+ M+    +K 
Sbjct: 556 ACRMHGNVEIGACVADKLVELDPSDSGIYVLMSQIYASKNKWDQVKMLRMTMRDRGVKKN 615

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            G SS+EV+ + H+F V D  H  SE+IY  +  +   LK
Sbjct: 616 PGCSSIEVEGKFHDFLVADVSHACSEEIYSALKNIYFHLK 655


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 189/581 (32%), Positives = 319/581 (54%), Gaps = 9/581 (1%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  + + +++F  +++    R+  +   ++     C  M  A+ VF  +   DV  + TL
Sbjct: 146 CFEIGEARRVFDVLVR----RNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTL 201

Query: 87  IRACVQNSLN-AQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           I    +N     +A  +F  M   G  T N FT+  +++AC       + + +H L+ KC
Sbjct: 202 ISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKC 261

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   D  +  +L++ Y +C  +  +L  ++   +    + + NS+I GL+  G + +A  
Sbjct: 262 GLEYDPSIGGALVEFYCECEAIDDAL--RVCKGVVNPCLNALNSLIEGLISMGRIEDAEL 319

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           +F+ M E + VS+N ++ GYA  G+M+ +  LFEK+P R I S +TM+  YS++G+++ A
Sbjct: 320 VFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKA 379

Query: 265 KLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
             LF+     K  V W  +ISGY   G  +EA +LY  M    ++    T  ++  AC+ 
Sbjct: 380 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSC 439

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L  G  +HA + K  F+ N  V  +L+DMY+KCGS+  A + F  +   ++ +W A+
Sbjct: 440 LGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTAL 499

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G A HG G +A+ LF RM ++G  P+  TFVGVL AC+ AG +++G++ F+SMER Y 
Sbjct: 500 INGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYS 559

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           + P +EHY C++DLLGRSG ++EA   ++ MP+E + ++WG LL AC     +E+ E V 
Sbjct: 560 VTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVA 619

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + +         +Y +LSNI+A  G W +   VR  ++  + +K  G S +E++N++H F
Sbjct: 620 EKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVF 679

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEGV 604
           S+ D+ HP    IY  +  L  ++  V H   +S  I + V
Sbjct: 680 SIEDRSHPYCNMIYATLEHLTANINSVVHFDHVSIPITQAV 720



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 179/411 (43%), Gaps = 57/411 (13%)

Query: 121 LLKACNGKNWFH-LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           L+KA   K W H  ++             +I   N  I +Y+K   + V  A++LF  M 
Sbjct: 2   LIKASISKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDV--ARQLFDQMP 59

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL----------DG-- 223
           +R +VSWN+MI+   K G  SEA  L   M          +++++L          DG  
Sbjct: 60  QRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKL 119

Query: 224 -----------------------YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                                  YA   E+  A  +F+ +  RN V WS M+ GY     
Sbjct: 120 IHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNV 179

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEK----GMAKEAARLYDQMEEAGLKPDDGTLIS 316
           M+ A  +F +MP + +V WT +ISG+++     G A E  RL   M      P++ T   
Sbjct: 180 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRL--MMRSGETTPNEFTFDC 237

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++ AC   G+L +G  VH  + K   + + ++  ALV+ Y +C ++D+A+ V  G+    
Sbjct: 238 VVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPC 297

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L + N+++ GL   G+ E A  +F+ M +    P  Y    ++      G +D   + F 
Sbjct: 298 LNALNSLIEGLISMGRIEDAELVFNGMTE--MNPVSYNL--MIKGYAVGGQMDDSKRLFE 353

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
            M         +     MI +  R+G + +AL L +    E + + W +++
Sbjct: 354 KMP-----CRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMI 399



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 69/350 (19%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + +S N  +  YAK  ++++A +LF+++P R +VSW+TM+  YSK G             
Sbjct: 31  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRF----------- 79

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
                                EA  L   M  + +K  + T  S+L+ CA    L  G  
Sbjct: 80  --------------------SEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKL 119

Query: 333 VHASINKYRFKCNTNVCNALVDMYAK-------------------------------CGS 361
           +H  + K   +    V +AL+  YA                                C  
Sbjct: 120 IHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNV 179

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG-EKALGLFSRMKDEG-FGPDKYTFVGVL 419
           +D+A+SVF  M ++D+V+W  ++ G + +G G  KAL +F  M   G   P+++TF  V+
Sbjct: 180 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEIFRLMMRSGETTPNEFTFDCVV 239

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC   G +  G +  + +    G+       G +++       + +ALR+ + + V P 
Sbjct: 240 RACGRLGILSVG-RTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGV-VNPC 297

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
                +L+        +E AE V + +  +   +P +Y ++   +A  G 
Sbjct: 298 LNALNSLIEGLISMGRIEDAELVFNGMTEM---NPVSYNLMIKGYAVGGQ 344


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 185/519 (35%), Positives = 296/519 (57%), Gaps = 11/519 (2%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           YN L+RA +       A  +F++M +   V  D  T    LK+C+      + + I A  
Sbjct: 86  YNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYA 145

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G   D FV +SLI  Y+ C    V+ A+ LF ++ E  +V WN++I   +K G   E
Sbjct: 146 VKRGLMADRFVLSSLIHMYASCR--DVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWME 203

Query: 202 ARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVW 253
              +F  M E     D ++  +++    + G+  L   + E +  + +V      + ++ 
Sbjct: 204 VVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALID 263

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y+K G++  A+ LFD M ++ +V W+ +ISGY +    +EA  L+ +M+ A ++P+D T
Sbjct: 264 MYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVT 323

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           ++S+L+ACA  G L  G  VH+ I + R      +  ALVD YAKCG +D+A+  F  M 
Sbjct: 324 MVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMP 383

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K+  +W A++ G+A +G+G +AL LFS M+     P   TF+GVL AC+H+  +++G +
Sbjct: 384 VKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRR 443

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           +F SM +DYGI P+ EHYGC++DLLGR+G + EA + +++MP+EPNA+IW  LL +C  H
Sbjct: 444 HFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVH 503

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             VE+ EE L  ++ L  S  G+Y +LSNI+A+ G W   A +R +MK    +K  G S 
Sbjct: 504 KNVEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSL 563

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +E+D  V EF   D  HP+ ++IYQ +  +   +K  G+
Sbjct: 564 IELDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGY 602



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 67/314 (21%), Positives = 131/314 (41%), Gaps = 50/314 (15%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L R+  +   LI   A C ++G A ++F+ +Q  DV  ++ +I    Q     +A  +F 
Sbjct: 251 LVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFS 310

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           +MQ   V  ++ T   +L AC         + +H+ I +      I +  +L+D Y+KCG
Sbjct: 311 EMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCG 370

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE-------------------------- 198
              +  A + F SM  ++  +W ++I G+   G                           
Sbjct: 371 C--IDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGV 428

Query: 199 ---------LSEARRLFDEMPER-----DAVSWNTILDGYAKAGEMNLAFELFEKIP-HR 243
                    + E RR FD M +       A  +  ++D   +AG ++ A++    +P   
Sbjct: 429 LMACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEP 488

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-----WTIIISGYAEKGMAKEAARL 298
           N V W  ++   +   ++E+ +    ++   +L P     + ++ + YA  G  K AA +
Sbjct: 489 NAVIWRALLSSCAVHKNVEIGEEALKQI--VSLNPSHSGDYILLSNIYASVGQWKNAAMI 546

Query: 299 YDQMEEAGLKPDDG 312
             +M++ G++   G
Sbjct: 547 RKEMKDRGIEKTPG 560


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 297/576 (51%), Gaps = 68/576 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
            Q L     L    Q+ A ++   LQ    +  K+++  A    +  ++ VFN I +P  
Sbjct: 77  FQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSS 136

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            L+N++IRA  +     +    +  M   G   D FT+PF+LK+        + + +H L
Sbjct: 137 LLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGKCVHGL 196

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + G   D++V  SLI  Y KCG                                 E++
Sbjct: 197 ILRIGLQFDLYVATSLIILYGKCG---------------------------------EIN 223

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           +A ++FD M  RD  SWN +L GY K+G ++ A  +FE++P RNIVSW+TM+ GYS+ G 
Sbjct: 224 DAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSG- 282

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISIL 318
                                         +A++A  L+D+M  E++G++P+  T++S+L
Sbjct: 283 ------------------------------LAQQALSLFDEMVKEDSGVRPNWVTIMSVL 312

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KD 376
            ACA+   L  G ++H    +     N +V  AL  MYAKCGSL +A + F+ + +  K+
Sbjct: 313 PACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKN 372

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L++WN M+   A +G G +A+  F  M   G  PD  TF G+L  C+H+G +D G++YF 
Sbjct: 373 LIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFN 432

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M   Y I P+VEHY C+ DLLGR+GRL EA +LV  MP+     IWG+LL ACRKH  +
Sbjct: 433 HMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNL 492

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           E+AE     L  L+  + GNY +LSN++A  G W +V  +R  +K    +K  G S +E+
Sbjct: 493 EMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEI 552

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           + + H F   D  HP+ ++IY  +  L + +K  G+
Sbjct: 553 NGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGY 588


>gi|356518597|ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 186/503 (36%), Positives = 285/503 (56%), Gaps = 40/503 (7%)

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           IR  +Q      A   +   + +GV+ D+   P L KAC    + H V+ +HA   K G 
Sbjct: 19  IRNHIQQGSLRCALLAYKQTRHEGVY-DSSVAPLLFKACASLPFLHYVKALHAESIKAGS 77

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG-------------- 192
             D+ +  +L+ +YSKCGVV    A+ LF +M ER++V+WN+MI+G              
Sbjct: 78  ESDVIIGTALLTTYSKCGVV--RDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVF 135

Query: 193 -----------------LVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKAGEMNLA 233
                              + G+++ ARRLFDE+P   ++ V+W  ++DGYA+ GEM  A
Sbjct: 136 EKMQGKTQVTWSQMIGGFARNGDIATARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAA 195

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            E+FE +P RN   WS+M+ GY K G++  A  +FD +P + L  W  +I+GY + G  +
Sbjct: 196 REVFEMMPERNCFVWSSMIHGYFKKGNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGE 255

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           +A   ++ M   G +PD+ T++S+L+ACA+ G L +G ++H  I       N  V + LV
Sbjct: 256 KALLAFEGMGAEGFEPDEFTVVSVLSACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLV 315

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DMYAKCG L NA  VF G T+K++  WNAM+ G A++G+  + L  F RM++    PD  
Sbjct: 316 DMYAKCGDLVNARLVFEGFTEKNIFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGI 375

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           TF+ VL AC H G + + ++    ME  Y I   ++HYGCM+DLLGR+GRLK+A  L+  
Sbjct: 376 TFLTVLSACAHRGLVTEALEVISKME-GYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVR 434

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLD--CLIRLKGSDPGNYTMLSNIFAATGDWN 531
           MP++PN  + G +LGACR H+ + +AE+V+   C   + G+   N  +LSNI+AA+  W 
Sbjct: 435 MPMKPNDTVLGAMLGACRIHSDMNMAEQVMKLICEEPVTGASSHN-VLLSNIYAASEKWE 493

Query: 532 KVANVRLQMKKTRAQKPSGASSV 554
           K   ++       +Q+  G SS+
Sbjct: 494 KAERMKRITVDGGSQRIPGCSSI 516



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 122/280 (43%), Gaps = 19/280 (6%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDL---------QRDPYIAPKLISSLALC 62
           + RRL +E    L            +A+I +++          +R+ ++   +I      
Sbjct: 161 TARRLFDEVPHELKNVVTWTVMVDGYARIGEMEAAREVFEMMPERNCFVWSSMIHGYFKK 220

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
             +  A  VF+ +   ++ ++N++I   VQN    +A   F  M  +G   D FT   +L
Sbjct: 221 GNVTEAAAVFDWVPVRNLEIWNSMIAGYVQNGFGEKALLAFEGMGAEGFEPDEFTVVSVL 280

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            AC       + + IH +I   G   + FV + L+D Y+KCG   +  A+ +F    E++
Sbjct: 281 SACAQLGHLDVGKQIHHMIEHKGIVVNPFVLSGLVDMYAKCG--DLVNARLVFEGFTEKN 338

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE 238
           I  WN+MI+G    G+ SE    F  M E     D +++ T+L   A  G +  A E+  
Sbjct: 339 IFCWNAMISGFAINGKCSEVLEFFGRMEESNIRPDGITFLTVLSACAHRGLVTEALEVIS 398

Query: 239 KIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           K+        I  +  MV    + G ++ A  L  RMP K
Sbjct: 399 KMEGYRIEIGIKHYGCMVDLLGRAGRLKDAYDLIVRMPMK 438


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 195/568 (34%), Positives = 316/568 (55%), Gaps = 13/568 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMG-LAIKVFNDIQDPDVHLYNTLIRACVQN 93
           QL    +K D   D  I    +     C  +   + ++FN + + ++  YN +I    ++
Sbjct: 232 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARS 291

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFV 152
               +A  +F  +Q+ G+  D  +     +AC   K     +Q +H L  K     +I V
Sbjct: 292 DKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQ-VHGLSMKSLCQSNICV 350

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM--- 209
            N+++D Y KCG   +  A  +F  M  RD VSWN++IA   + G   +   LF  M   
Sbjct: 351 ANAILDMYGKCG--ALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQS 408

Query: 210 -PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS----TMVWGYSKDGDMEMA 264
             E D  ++ ++L   A    +N   E+  +I    +   S     ++  YSK G ME A
Sbjct: 409 GMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKA 468

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + L DR+  +T+V W  IISG++ +  ++EA + + +M E G+ PD+ T  +IL  CA  
Sbjct: 469 EKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANL 528

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             + LG ++HA I K   + +  + + LVDMY+KCG++ +   +F     +D V+WNAM+
Sbjct: 529 VTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMV 588

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A HG GE+AL +F  M+ E   P+  TF+ VL AC H G ++KG+ YF+SM  +YG+
Sbjct: 589 CGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGL 648

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            PQ+EHY C++D++GRSG++ +AL L++ MP E +A+IW TLL  C+ H  VE+AE+   
Sbjct: 649 DPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAY 708

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            +++L+  D   Y +LSNI+A  G WN+V  +R  M+    +K  G S +E+ +EVH F 
Sbjct: 709 SILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKSEVHAFL 768

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V D+ HP+S++IY+ ++ L  ++K VG+
Sbjct: 769 VGDKAHPRSKEIYENLDVLTDEMKWVGY 796



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 134/587 (22%), Positives = 253/587 (43%), Gaps = 82/587 (13%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           +K++      Q     K L   KQ  A++I  + +   ++   LI     C  +G A KV
Sbjct: 40  TKKKTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKV 99

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF---------------LDMQEKGVFTDNF 116
           F+ +   D   +N ++           A ++F                 M   G   D  
Sbjct: 100 FDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRT 159

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL--AKKL 174
           T+  +LK+C+          IH L  K G+  D+   ++L+D Y+KC V    L    +L
Sbjct: 160 TFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLEL 219

Query: 175 FMSMGE------------------RDIVSWNSMIAGLVKGGELSE-ARRLFDEMPERDAV 215
           F  M +                   D+V   + +   +K   LS+ + +LF+ +P  +  
Sbjct: 220 FKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQ 279

Query: 216 SWNTILDGYAKAGEMNLAFELF-------------------------------------- 237
           S+N I+ GYA++ +   A  +F                                      
Sbjct: 280 SYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLS 339

Query: 238 -EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
            + +   NI   + ++  Y K G +  A L+F+ M ++  V W  II+ + + G  ++  
Sbjct: 340 MKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTL 399

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
            L+  M ++G++PD+ T  S+L ACA    L  GM++H  I K R   ++ V  AL+DMY
Sbjct: 400 SLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMY 459

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           +KCG ++ A  + + + ++ +VSWNA++ G ++  Q E+A   FS+M + G  PD +T+ 
Sbjct: 460 SKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYA 519

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY--GCMIDLLGRSGRLKEALRLVQSM 474
            +L  C +   ++ G Q    + +      Q + Y    ++D+  + G +++   + +  
Sbjct: 520 TILDTCANLVTVELGKQIHAQIIKKE---LQSDAYISSTLVDMYSKCGNMQDFQLIFEKA 576

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           P   + + W  ++    +H   E A ++ +  ++L+   P + T L+
Sbjct: 577 P-NRDFVTWNAMVCGYAQHGLGEEALKIFE-YMQLENVKPNHATFLA 621



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 141/327 (43%), Gaps = 46/327 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN   ++  +IIK  +  D ++   LI   + C  M  A K+ + + +  V  +N +I  
Sbjct: 430 LNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISG 489

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
                 + +A + F  M E GV  DNFTY  +L  C       L + IHA I K     D
Sbjct: 490 FSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSD 549

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            ++ ++L+D YSKCG   +   + +F     RD V+WN+M+ G  + G   EA ++F+ M
Sbjct: 550 AYISSTLVDMYSKCG--NMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYM 607

Query: 210 P------------------------ERDAVSWNTILDGY----------------AKAGE 229
                                    E+    ++++L  Y                 ++G+
Sbjct: 608 QLENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQ 667

Query: 230 MNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAK---LLFDRMPAKTLVPWTIIISG 285
           ++ A EL E +P   + V W T++      G++E+A+       ++  +    + ++ + 
Sbjct: 668 VSKALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNI 727

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA  GM  E  +L   M   GLK + G
Sbjct: 728 YANAGMWNEVTKLRKMMRFNGLKKEPG 754


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 299/556 (53%), Gaps = 22/556 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQD 77
           L  L  C++L +  QL   +IK  + R+     +LI     C +   +  A  VF  I  
Sbjct: 10  LSQLENCRSLVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFESIDC 69

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P V+++N++IR    +    +A   + +M  KG   D FT+P++LKAC+G         +
Sbjct: 70  PSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQFGSCV 129

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K G+  +++V   L+  Y  CG V   L  ++F  + + ++V+W S+I+G V   
Sbjct: 130 HGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGL--RVFEDIPQWNVVAWGSLISGFVNNN 187

Query: 198 ELSEARRLFDEMPERDAVSWNTIL-DGYAKAGE--------------MNLAFE-LFEKIP 241
             S+A   F EM      +  TI+ D     G                 L F+  F+   
Sbjct: 188 RFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKV 247

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N++  ++++  Y+K GD+  A+ LFD MP +TLV W  II+GY++ G A+EA  ++  
Sbjct: 248 GFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLD 307

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M + G+ PD  T +S++ A    G   LG  +HA ++K  F  +  +  ALV+MYAK G 
Sbjct: 308 MLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGD 367

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLC 420
            ++A   F  + KKD ++W  ++ GLA HG G +AL +F RM+++G   PD  T++GVL 
Sbjct: 368 AESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLY 427

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC+H G +++G +YF  M   +G+ P VEHYGCM+D+L R+GR +EA RLV++MPV+PN 
Sbjct: 428 ACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVKPNV 487

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            IWG LL  C  H  +EL + +   +   +    G Y +LSNI+A  G W  V  +R  M
Sbjct: 488 NIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLIRESM 547

Query: 541 KKTRAQKPSGASSVEV 556
           K  R  K  G SSVE 
Sbjct: 548 KSKRVDKVLGHSSVET 563


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/576 (33%), Positives = 325/576 (56%), Gaps = 11/576 (1%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ     +NL + +Q+   +IK     D ++   LIS  + C  +G A KV++++   DV
Sbjct: 186 LQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDV 245

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
              N +I    +     +A  VFL +   G+  +++T+  ++ ACNG     +++++H +
Sbjct: 246 RCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGM 305

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             KCG   +I V N+++  Y K G++    A+K F  MGER++VSW ++++G VK G   
Sbjct: 306 CIKCGCGDEISVGNAIVSVYVKHGML--EEAEKSFCGMGERNLVSWTALLSGYVKNGNGK 363

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSWST-MV 252
           +A   F ++ E     D+  + T+LDG ++   + L  ++     K+ + + VS  T ++
Sbjct: 364 KALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVVKLGYVHDVSVGTALI 423

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K   +  A+L+F  +  K +V +  I+SGY      ++A  L+ Q+  A +KPD  
Sbjct: 424 DLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYIGAD-EEDAMALFSQLRLADIKPDSV 482

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T   +L+  A+   L  G  +HA I K  F+ N +V NA++ MYAKCGS+ +A  +F  M
Sbjct: 483 TFARLLSLSADQACLVKGKCLHAYIIKTGFEANPSVGNAVITMYAKCGSIGDACQLFYSM 542

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
              D +SWNA++   A+HGQG KAL LF  MK E F PD+ T + VL AC+++G +++G 
Sbjct: 543 NYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEITILSVLQACSYSGLLEEGF 602

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
             F  ME  YGI P++EH+ CM+DLLGR+G L EA+  +   P   + ++W TL+  C+ 
Sbjct: 603 CLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRSPFSGSPLLWRTLVHVCKL 662

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  +   +     L+ L   + G+Y ++SN++A  G  N+ A VR  M   +  K +G+S
Sbjct: 663 HGDLNFGQIASKHLLDLAPEEAGSYILVSNLYAGGGMLNEAARVRTVMNDLKVSKEAGSS 722

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            +E+DN+VH+F   D+ HP+S++IY  ++ L  ++K
Sbjct: 723 WIEIDNKVHQFVASDKDHPESKEIYAKLDLLKSEMK 758



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 224/470 (47%), Gaps = 17/470 (3%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + A + KL  Q D +    L++      ++G A  VF+++   +   + TLI+  +Q 
Sbjct: 98  QAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQV 157

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           +     FR+  +M   G   +  T   +L+AC+        + IH  + K G+  D+FV 
Sbjct: 158 NDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVG 217

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            SLI  YS+CG +G   A+K++ ++  +D+   N MI+   K G   +A  +F  +    
Sbjct: 218 TSLISMYSRCGDLGA--AEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSG 275

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPH---------RNIVSWSTMVWGYSKDGDMEMA 264
               +        A   ++  E+  ++ H           I   + +V  Y K G +E A
Sbjct: 276 LEPNDYTFTNVISACNGDIDVEVL-RVLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEA 334

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           +  F  M  + LV WT ++SGY + G  K+A   + Q+ E G+  D     ++L  C+E 
Sbjct: 335 EKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSEC 394

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             LGLG+++H  + K  +  + +V  AL+D+YAKC  L +A  VF+ +  K++VS+NA+L
Sbjct: 395 KNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAIL 454

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG-VQYFYSMERDYG 443
            G  +    E A+ LFS+++     PD  TF  +L        + KG   + Y ++  + 
Sbjct: 455 SGY-IGADEEDAMALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKCLHAYIIKTGFE 513

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             P V +   +I +  + G + +A +L  SM    ++I W  ++ A   H
Sbjct: 514 ANPSVGN--AVITMYAKCGSIGDACQLFYSMNY-LDSISWNAVISAYALH 560



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 192/396 (48%), Gaps = 25/396 (6%)

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           D  +  +F D   +P LL+   G     L Q IHA + K GY  D F  N+L++ Y K  
Sbjct: 71  DSDQNPLFND---WPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFN 127

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTI 220
            +G   A+ +F  M  R+ ++W ++I G ++  ++    R+  EM     E +  + + I
Sbjct: 128 KLGD--AQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVI 185

Query: 221 LDGYAK-----AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
           L           GE    F + ++    ++   ++++  YS+ GD+  A+ ++  +  K 
Sbjct: 186 LQACDSLENLVRGEQIHGF-VIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKD 244

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +     +IS Y + G  ++A  ++  +  +GL+P+D T  ++++AC       + ++V  
Sbjct: 245 VRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGD----IDVEVLR 300

Query: 336 SINKYRFKC----NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
            ++    KC      +V NA+V +Y K G L+ A   F GM +++LVSW A+L G   +G
Sbjct: 301 VLHGMCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNG 360

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            G+KAL  FS++ + G G D   F  +L  C+    +  G+Q  +      G +  V   
Sbjct: 361 NGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQ-IHGFVVKLGYVHDVSVG 419

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
             +IDL  +  +L+ A RLV    ++ N + +  +L
Sbjct: 420 TALIDLYAKCRKLRSA-RLVFHSLLDKNIVSFNAIL 454



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-IVSWSTMVWGYSKD 258
           S+   LF++ P+   +S   I  G    G+   AF    K+ ++N     + +V  Y K 
Sbjct: 72  SDQNPLFNDWPQLLQIS---IGSGDLMLGQAIHAF--LAKLGYQNDAFRGNNLVNLYGKF 126

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +  A+ +FD M  +  + WT +I G+ +    +   R+  +M   G + ++ T   IL
Sbjct: 127 NKLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVIL 186

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            AC     L  G ++H  + K  F  +  V  +L+ MY++CG L  A  V++ +  KD+ 
Sbjct: 187 QACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVR 246

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV-QYFYS 437
             N M+      G GEKA+G+F  +   G  P+ YTF  V+ AC   G ID  V +  + 
Sbjct: 247 CLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACN--GDIDVEVLRVLHG 304

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           M    G   ++     ++ +  + G L+EA +    M  E N + W  LL    K+
Sbjct: 305 MCIKCGCGDEISVGNAIVSVYVKHGMLEEAEKSFCGMG-ERNLVSWTALLSGYVKN 359


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 325/589 (55%), Gaps = 26/589 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND-IQDPD 79
           LQ+    +NLN+ KQL + +I       P     LI+  + C QMG AI VF D   + +
Sbjct: 18  LQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERN 77

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V  YN +I   V N L ++ F+ +  M+ +GV  D +T+P +++ C        V+ IH 
Sbjct: 78  VFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCC---EVMEVKKIHG 134

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   D+FV ++L+++Y K G   +  A+K+F  +  RD+V WN+MI G  K G L
Sbjct: 135 CLLKMGLELDVFVGSALVNTYLKNG--SMEDAQKVFGELSIRDVVLWNAMINGYAKIGCL 192

Query: 200 SEARRLFDEM------PERDAVSWNTILDGYAKAGEMN---LAFELFEKIPHRNIVSWST 250
            EA  +F  M      P R  ++   IL  +A  G+++       +  K+ + + VS S 
Sbjct: 193 DEALEVFRRMHVKGVAPSRFTIT--GILSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSN 250

Query: 251 -MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            ++  Y K   +  A ++F+ +  K +  W  IIS + + G      RL+D+M  +G+ P
Sbjct: 251 ALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILP 310

Query: 310 DDGTLISILAACAESGLLGLGMKVHASI--------NKYRFKCNTNVCNALVDMYAKCGS 361
           D  T+ ++L AC+    L  G ++H  +        ++     N  V NA++DMYAKCGS
Sbjct: 311 DLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGS 370

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           ++NA+ +F+ M+KKD+ SWN M+ G  MHG   +ALG+FS+M +  F P++ T VGVL A
Sbjct: 371 MNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSA 430

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C HAGF+  G  +   ME  +G++P +EHY C+ID+LGR+G L++A  +VQ MP++ N +
Sbjct: 431 CNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPV 490

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W  LLGACR H   ELAE     +++L+    G+Y ++SN++   G + +V  VR  MK
Sbjct: 491 VWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKTMK 550

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           +   +K  G S +E+ + VH F   D+ H +   +   +  +G  L  V
Sbjct: 551 EQNVKKTPGCSWIELKDGVHVFRTGDRTHSELNALTNQLCDIGFILDEV 599



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 112/226 (49%), Gaps = 9/226 (3%)

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF-NGMT 373
           ++ L +CA+   L  G ++H+ +  Y F  +     +L++MY+KCG +  A+ VF +   
Sbjct: 15  VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCH 74

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           ++++ ++NA++ G   +G   K    + +M+ EG  PDKYTF  V+  C     + K   
Sbjct: 75  ERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKK--- 131

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             +      G+   V     +++   ++G +++A ++   + +  + ++W  ++    K 
Sbjct: 132 -IHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAMINGYAKI 189

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTM--LSNIFAATGDWNKVANVR 537
             ++ A EV    + +KG  P  +T+  + ++FA+ GD +    V 
Sbjct: 190 GCLDEALEVFR-RMHVKGVAPSRFTITGILSVFASRGDLDNGKTVH 234


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 193/571 (33%), Positives = 312/571 (54%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN  K++ AQ++      D  I   L+S       M  A +VF+ +   DV  +N ++  
Sbjct: 174 LNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGG 233

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             ++    +AF +F  MQ+ G+  +  ++  +L  C         + +HA     G   D
Sbjct: 234 YAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDD 293

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V  SLI  Y+ CG   +  A+++F +M  RD+VSW  MI G  + G + +A  LF  M
Sbjct: 294 IRVATSLIRMYTTCG--SIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATM 351

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDM 261
            E     D +++  I++  A +  +N A E+  ++       +++  + +V  Y+K G +
Sbjct: 352 QEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAI 411

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ +FD MP + +V W+ +I  Y E G   EA   +  M+ + ++PD  T I++L AC
Sbjct: 412 KDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNAC 471

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
              G L +GM+++    K     +  + NAL+ M AK GS++ A  +F+ M ++D+++WN
Sbjct: 472 GHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWN 531

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ G ++HG   +AL LF RM  E F P+  TFVGVL AC+ AGF+D+G ++F  +   
Sbjct: 532 AMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEG 591

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            GI+P V+ YGCM+DLLGR+G L EA  L++SMPV+P + IW +LL ACR H  +++AE 
Sbjct: 592 RGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAER 651

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             +  + +   D   Y  LS+++AA G W  VA VR  M+    +K  G + +EV  +VH
Sbjct: 652 AAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVH 711

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ HP   +IY  +  L   +K  G+
Sbjct: 712 TFVVEDRSHPLVGEIYAELARLMNAIKREGY 742



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 246/496 (49%), Gaps = 15/496 (3%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
             +C  L      KQ+   II+   Q + Y    LI   ++C  +  A ++F+ +++  V
Sbjct: 64  FQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTV 123

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N LI    Q     +AF +F  M ++G+     T+  +L AC+     +  + +HA 
Sbjct: 124 VTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQ 183

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +   G+  D  +  +L+  Y K G   +  A+++F  +  RD+ ++N M+ G  K G+  
Sbjct: 184 VVTAGFVSDFRIGTALVSMYVKGG--SMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWE 241

Query: 201 EARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMV 252
           +A  LF  M +     + +S+ +ILDG      +     +  +  +  +V      ++++
Sbjct: 242 KAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLI 301

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+  G +E A+ +FD M  + +V WT++I GYAE G  ++A  L+  M+E G++PD  
Sbjct: 302 RMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRI 361

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T + I+ ACA S  L    ++H+ ++   F  +  V  ALV MYAKCG++ +A  VF+ M
Sbjct: 362 TYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAM 421

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++D+VSW+AM+     +G G +A   F  MK     PD  T++ +L AC H G +D G+
Sbjct: 422 PRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGM 481

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +  Y+      ++  V     +I +  + G ++ A  +  +M V  + I W  ++G    
Sbjct: 482 E-IYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSL 539

Query: 493 HNAVELAEEVLDCLIR 508
           H     A  + D +++
Sbjct: 540 HGNAREALYLFDRMLK 555



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 224/449 (49%), Gaps = 26/449 (5%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQ--DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE 108
           ++ ++ +++A+ R+     + F  +Q   P     +T  R    N        V   + E
Sbjct: 3   VSTRIAANIAVVRR-----RWFGSLQLPVPSARFRSTFTRRVGAND-------VLQRLGE 50

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
            G   D+ TY  L + C       L + +   I + G   +I+  N+LI  YS CG   V
Sbjct: 51  GGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICG--NV 108

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRLFDEMPERDAVSWNTILDGY 224
           + A+++F S+  + +V+WN++IAG  + G + EA    R++ DE  E   +++ ++LD  
Sbjct: 109 TEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDAC 168

Query: 225 AKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           +    +N   E+  ++     VS     + +V  Y K G M+ A+ +FD +  + +  + 
Sbjct: 169 SSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFN 228

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +++ GYA+ G  ++A  L+ +M++ GLKP+  + +SIL  C     L  G  VHA     
Sbjct: 229 VMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNA 288

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
               +  V  +L+ MY  CGS++ A  VF+ M  +D+VSW  M+ G A +G  E A GLF
Sbjct: 289 GLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLF 348

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           + M++EG  PD+ T++ ++ AC  +  ++   +  +S     G    +     ++ +  +
Sbjct: 349 ATMQEEGIQPDRITYMHIMNACAISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAK 407

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G +K+A ++  +MP   + + W  ++GA
Sbjct: 408 CGAIKDARQVFDAMP-RRDVVSWSAMIGA 435



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/384 (28%), Positives = 180/384 (46%), Gaps = 52/384 (13%)

Query: 184 VSWNSMIAGLVKGGELSEAR---RLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEK 239
           V  N ++  L +GG   ++R   +LF    E RDA     + D   + G           
Sbjct: 39  VGANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGR---------- 88

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
               NI   +T++  YS  G++  A+ +FD +  KT+V W  +I+GYA+ G  KEA  L+
Sbjct: 89  --QLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALF 146

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM + GL+P   T +S+L AC+    L  G +VHA +    F  +  +  ALV MY K 
Sbjct: 147 RQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKG 206

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           GS+D+A  VF+G+  +D+ ++N M+ G A  G  EKA  LF RM+  G  P+K +F+ +L
Sbjct: 207 GSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSIL 266

Query: 420 ----------------CACTHAGFIDKGVQYFYSMERDYGILPQVE-------------- 449
                             C +AG +D  ++   S+ R Y     +E              
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDD-IRVATSLIRMYTTCGSIEGARRVFDNMKVRDV 325

Query: 450 -HYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
             +  MI+    +G +++A  L  +M    ++P+ I +  ++ AC     +  A E+   
Sbjct: 326 VSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQ 385

Query: 506 L-IRLKGSDPGNYTMLSNIFAATG 528
           + I   G+D    T L +++A  G
Sbjct: 386 VDIAGFGTDLLVSTALVHMYAKCG 409



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 120/255 (47%), Gaps = 11/255 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NLN  +++ +Q+       D  ++  L+   A C  +  A +VF+ +   DV  ++ +I 
Sbjct: 375 NLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIG 434

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A V+N    +AF  F  M+   +  D  TY  LL AC       +   I+    K     
Sbjct: 435 AYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVS 494

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + + N+LI   +K G   V  A+ +F +M  RD+++WN+MI G    G   EA  LFD 
Sbjct: 495 HVPLGNALIIMNAKHG--SVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDR 552

Query: 209 M-PER---DAVSWNTILDGYAKAGEMNLAFELFEKIPH-RNIVS----WSTMVWGYSKDG 259
           M  ER   ++V++  +L   ++AG ++     F  +   R IV     +  MV    + G
Sbjct: 553 MLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAG 612

Query: 260 DMEMAKLLFDRMPAK 274
           +++ A+LL   MP K
Sbjct: 613 ELDEAELLIKSMPVK 627


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 190/575 (33%), Positives = 318/575 (55%), Gaps = 11/575 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + K++   ++KL       +   LI++   C ++  A  +F+++ D DV  +N++I  
Sbjct: 174 VRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISG 233

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
           C  N  +      F+ M   GV  D+ T   +L AC       L + +HA   K G+ G 
Sbjct: 234 CTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGG 293

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +   N+L+D YSKCG   ++ A ++F+ MGE  IVSW S+IA  V+ G   EA  LFDEM
Sbjct: 294 VMFNNTLLDMYSKCG--NLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEM 351

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
             +    D  +  +++   A +  ++   E+   I   N+ S     + ++  Y+K G M
Sbjct: 352 QSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSM 411

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A L+F ++P K +V W  +I GY++  +  EA +L+  M++  LKPDD T+  +L AC
Sbjct: 412 EEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPAC 470

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G ++H  I +  +  + +V  ALVDMY KCG L  A  +F+ + KKD++ W 
Sbjct: 471 AGLAALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWT 530

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+ G  MHG G++A+  F +M+  G  P++ +F  +L ACTH+G + +G + F SM+ +
Sbjct: 531 VMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSE 590

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
             I P++EHY CM+DLL RSG L  A + +++MP++P+A IWG LL  CR H+ VELAE+
Sbjct: 591 CNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEK 650

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           V + +  L+  +   Y +L+N++A    W +V  ++ ++ K   +   G S +EV  + +
Sbjct: 651 VAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFN 710

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            F   D  HP+++ I  ++  L   +   G++ K+
Sbjct: 711 IFFAGDTSHPQAKMIDSLLRKLTMKMNRGGYSNKI 745



 Score =  198 bits (503), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 151/516 (29%), Positives = 252/516 (48%), Gaps = 16/516 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ   + K+L   K++ + I    +  D  +  KL+     C  +    ++F+ I +  +
Sbjct: 64  LQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKI 123

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            L+N L+    +     ++  +F  MQE G+  D++T+  +LK           + +H  
Sbjct: 124 FLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGY 183

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G+     V NSLI +Y KCG   V  A+ LF  + +RD+VSWNSMI+G    G   
Sbjct: 184 VLKLGFGSYNAVVNSLIAAYFKCG--EVESARILFDELSDRDVVSWNSMISGCTMNGFSR 241

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSW-STMV 252
                F +M     + D+ +   +L   A  G + L   L     K      V + +T++
Sbjct: 242 NGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLL 301

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             YSK G++  A  +F +M   T+V WT II+ +  +G+  EA  L+D+M+  GL+PD  
Sbjct: 302 DMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIY 361

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            + S++ ACA S  L  G +VH  I K     N  V NAL++MYAKCGS++ A  +F+ +
Sbjct: 362 AVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQL 421

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K++VSWN M+ G + +    +AL LF  M+ +   PD  T   VL AC     ++KG 
Sbjct: 422 PVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGR 480

Query: 433 QYFYSMERDYGILPQVEHYGC-MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           +    + R  G    + H  C ++D+  + G L  A +L   +P + + I+W  ++    
Sbjct: 481 EIHGHILRK-GYFSDL-HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYG 537

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            H   + A    +  +R+ G +P   +  S ++A T
Sbjct: 538 MHGFGKEAISTFE-KMRVAGIEPEESSFTSILYACT 572



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           I  + E G  + A +L  + + + L+ +  T  S+L  CAE   L  G +VH+ I+    
Sbjct: 31  ICKFCEMGDLRNAMKLLSRSQRSELELN--TYCSVLQLCAELKSLEDGKRVHSIISSNGM 88

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
             +  +   LV MY  CG L     +F+G+    +  WN ++   A  G   +++GLF +
Sbjct: 89  AIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEK 148

Query: 403 MKDEGFGPDKYTFVGVL 419
           M++ G   D YTF  VL
Sbjct: 149 MQELGIRGDSYTFTCVL 165


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 195/575 (33%), Positives = 316/575 (54%), Gaps = 49/575 (8%)

Query: 55  LISSLALCRQMGLAIKVFNDIQD-PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113
             S+++    + LAI +FN     P+++++NT+I     +  N +AF ++  M + G + 
Sbjct: 6   FFSAVSHPENLELAILLFNHFTPYPNLYIFNTMILGFPFS--NEKAFTIYRSMLQNGTYP 63

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAK 172
           D  T+ +LL+      +   V+ IH      G    + ++ NSLI  Y   G      A+
Sbjct: 64  DRQTFLYLLQT---TKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCF--ECAR 118

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-------------------- 212
           +LF  M +R++VS+N+MI G  K G +     LF +M                       
Sbjct: 119 QLFDEMSDRNVVSYNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLG 178

Query: 213 -------------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                              + + +N +LD Y K  E+ LA ++F+    ++ VSW+T++ 
Sbjct: 179 ETKLGKSVHAQIEKSIGSSNLILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIA 238

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           GY+K G++E+A  LF+++P + +V W  +ISGYA+ G       L+ +M    +KPD  T
Sbjct: 239 GYAKVGELELACDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVT 298

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           ++++++A AE G L  G  +H    K   K      +AL+DMY KCGS++ A  +FN + 
Sbjct: 299 IVNLISAVAEMGALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIP 358

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           +KD+ +W  M+ G A HG G KAL LFS M+ E   P+  TFV VL AC+H+G +D+G++
Sbjct: 359 EKDVTTWTTMITGFAFHGFGNKALELFSVMQAET-KPNDVTFVSVLAACSHSGLVDEGLK 417

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F SM++ Y I P VEHYGC++DLL RSGRL +A+ +++ MP+EP+  IWG +L ACR H
Sbjct: 418 IFSSMKKRYSIEPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMH 477

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +ELAE  L  L++L+    G Y +LSN++A  G W+   ++R  M     +K +G SS
Sbjct: 478 RNMELAERALMELLKLEPEKEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSS 537

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           V VD  VH+F+  ++ HP+   I  +++ L  +++
Sbjct: 538 VAVDGMVHDFTASNKQHPRWMDICSILSFLTNEMR 572



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 124/415 (29%), Positives = 198/415 (47%), Gaps = 45/415 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL 82
           L   K + + KQ+    +   L  ++ Y+   LI           A ++F+++ D +V  
Sbjct: 72  LQTTKFVAEVKQIHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVS 131

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           YNT+I    +         +F DM+  G+  D+FT   LL  C       L + +HA I 
Sbjct: 132 YNTMILGFAKVGNILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIE 191

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K     ++ + N+L+D Y KC    + LA+K+F    E+D VSWN++IAG  K GEL  A
Sbjct: 192 KSIGSSNLILYNALLDMYVKCN--ELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELA 249

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----------------- 245
             LF+++P RD VSWN+++ GYA+ G+      LF ++   N+                 
Sbjct: 250 CDLFNQIPTRDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEM 309

Query: 246 ----------------------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                                  S S ++  Y K G +E A ++F+++P K +  WT +I
Sbjct: 310 GALDQGRWIHGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMI 369

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRF 342
           +G+A  G   +A  L+  M +A  KP+D T +S+LAAC+ SGL+  G+K+ +S+ K Y  
Sbjct: 370 TGFAFHGFGNKALELFSVM-QAETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSI 428

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAMLYGLAMHGQGEKA 396
           +        LVD+  + G L +A+ V   M  +   S W A+L    MH   E A
Sbjct: 429 EPGVEHYGCLVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELA 483


>gi|356499129|ref|XP_003518395.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 614

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 205/615 (33%), Positives = 316/615 (51%), Gaps = 79/615 (12%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPDVHLYN 84
           +C +    +Q+  Q++       P     L+S     +    +  +F+ I   P+ + +N
Sbjct: 33  QCSSTKTLQQVHTQMVVNSSIHTP--NNHLLSKAIHLKNFPYSSLLFSHIAPHPNDYAFN 90

Query: 85  TLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            +IRA      N   A  +F  M    +  DNFT+PF   +C            H+L++K
Sbjct: 91  IMIRALTTTWHNYPLALSLFHRMMSLSLTPDNFTFPFFFLSCANLASLSHACAAHSLLFK 150

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                D    +SLI +Y++CG+V                                 + AR
Sbjct: 151 LALHSDPHTAHSLITAYARCGLV---------------------------------ASAR 177

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN--------IVS-------- 247
           ++FDE+P RD+VSWN+++ GYAKAG    A E+F ++  R+        +VS        
Sbjct: 178 KVFDEIPHRDSVSWNSMIAGYAKAGCAREAVEVFREMGRRDGFEPDEMSLVSLLGACGEL 237

Query: 248 -------W-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                  W                 S ++  Y+K G++E A+ +FD M A+ ++ W  +I
Sbjct: 238 GDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGELESARRIFDGMAARDVITWNAVI 297

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SGYA+ GMA EA  L+  M+E  +  +  TL ++L+ACA  G L LG ++    ++  F+
Sbjct: 298 SGYAQNGMADEAILLFHGMKEDCVTANKITLTAVLSACATIGALDLGKQIDEYASQRGFQ 357

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  V  AL+DMYAK GSLDNA  VF  M +K+  SWNAM+  LA HG+ ++AL LF  M
Sbjct: 358 HDIFVATALIDMYAKSGSLDNAQRVFKDMPQKNEASWNAMISALAAHGKAKEALSLFQHM 417

Query: 404 KDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            DEG G  P+  TFVG+L AC HAG +D+G + F  M   +G++P++EHY CM+DLL R+
Sbjct: 418 SDEGGGARPNDITFVGLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARA 477

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G L EA  L++ MP +P+ +  G LLGACR    V++ E V+  ++ +  S+ GNY + S
Sbjct: 478 GHLYEAWDLIRKMPEKPDKVTLGALLGACRSKKNVDIGERVMRMILEVDPSNSGNYIISS 537

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
            I+A    W   A +RL M++    K  G S +EV+N +HEF   D L   S  +  +I+
Sbjct: 538 KIYANLNMWEDSARMRLLMRQKGITKTPGCSWIEVENHLHEFHAGDGLCLDSIDLSNIID 597

Query: 582 TLGKDLKPVGHAAKL 596
            L ++LK  G+  K+
Sbjct: 598 LLYEELKREGYVPKV 612


>gi|242085334|ref|XP_002443092.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
 gi|241943785|gb|EES16930.1| hypothetical protein SORBIDRAFT_08g008260 [Sorghum bicolor]
          Length = 655

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 334/635 (52%), Gaps = 51/635 (8%)

Query: 10  WFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC---RQ 64
           W + R L+     L  L  C +  +  QL A +    L    + A +L++  AL    R 
Sbjct: 22  WNTNRNLVVTHPLLSLLESCASFRRLLQLQALLTVSGLAAHRFPASRLLAFCALSDPPRL 81

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
              A  +    + P+ ++  T++R  ++    A A  +F  +    +  D  T  F +KA
Sbjct: 82  AHAAAVLAQCAEGPNAYMLATMMRGFLRAGKPAHALALFRRVLRDRLPADARTIVFAVKA 141

Query: 125 CNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
               +     + IH + +K G+ G  + V N+L+  Y+    + +  A+KLF  M +RD+
Sbjct: 142 ATTSS--SPAEAIHCVAFKRGFIGQSVLVGNALVHMYASS--MSLPDARKLFDEMADRDV 197

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEM-------PE------------------------- 211
           VSW +++ G  +GG   EA R+F  M       P                          
Sbjct: 198 VSWTTLVDGYARGGLPDEAWRVFCRMVVAGGGWPNEVTLVAAASAAGQIGLLGLGRMVHQ 257

Query: 212 -------RDAVSW-NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
                  R +V+  N ++D + K G +  A E+F+ +P +++ SW++MV  Y+K GD+E 
Sbjct: 258 CVVESGVRMSVNLENALVDMFGKCGCVASAKEIFDGMPIKDVYSWTSMVSAYAKCGDLEN 317

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A  LF  +P +  V W+ +++ Y++  + +EA R+++ M  AG++P D TL+S+L+ACA+
Sbjct: 318 AGKLFKEIPNRNAVSWSCMVAAYSQANLPEEAMRIFNDMIAAGVEPIDATLVSVLSACAQ 377

Query: 324 SGLLGLGMKVH-ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G L +G  ++ A I  ++ +   N+ NA +DM+AKCG +  A  +F  M  K++VSWN 
Sbjct: 378 LGCLDVGRCLYDAYIVSHKVELTVNLSNAFIDMFAKCGDVGAASRLFRNMEDKNVVSWNT 437

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A+HGQ E+AL LF + K  G  PD+ T++GVL AC+H+G + +G  +F  M+  Y
Sbjct: 438 MIVAHALHGQSEEALHLFQKFKAIGIFPDEITYIGVLSACSHSGLVSEGRYHFKEMKIVY 497

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P+ EHY CMIDLLG+ G L+EA  + +SMPV  +   WG LL ACR H  VE+ +  
Sbjct: 498 GIEPRAEHYACMIDLLGKVGLLEEAFEVARSMPVGADEAGWGALLNACRMHGNVEIGKCA 557

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D L+ L  SD G Y ++S I+A+   W +V  +R  M+    +K  G SS+EVD + HE
Sbjct: 558 ADKLVGLDPSDSGIYVLMSQIYASKSKWGQVKMIRTVMRDRGVKKNPGCSSIEVDGKFHE 617

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           F   D  H  SE IY  +  +    K  G+ + +S
Sbjct: 618 FLAADVSHAHSEDIYAALENIYLHSKLEGYISHVS 652


>gi|297826975|ref|XP_002881370.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297327209|gb|EFH57629.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 184/566 (32%), Positives = 321/566 (56%), Gaps = 47/566 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  N+ + ++LF ++   D +++      ++S     +Q+ +A  +F ++ + ++  +NT
Sbjct: 89  KLGNMREARELFDRV---DSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNT 145

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    Q+    +A  +F +M E+   + N                    MI AL+ +  
Sbjct: 146 MIDGYAQSGRIDKALELFDEMPERNTVSWN-------------------TMIKALVQR-- 184

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                      ID            A  LF  M  +D++SW +M+ GL K G++ EARRL
Sbjct: 185 ---------GRIDE-----------AMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRL 224

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD MPER+ +SWN ++ GY     ++ A +LF+ +P R+  SW+TM+ G+ ++ ++  A 
Sbjct: 225 FDCMPERNIISWNAMITGYTYNNRIDEADQLFQVMPERDFASWNTMITGFIRNREINRAC 284

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAES 324
            LFDRMP K ++ WT +I+GY E    +EA +++ +M   G +KP+ GT +SIL+AC++ 
Sbjct: 285 GLFDRMPQKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDL 344

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF-NGMT-KKDLVSWNA 382
             L  G ++H  I+K   + N  V +AL++MY+K G L  A  +F NG+  ++DL+SWN+
Sbjct: 345 AGLVEGQQIHQLISKSVHQENEVVTSALINMYSKSGELIAARKMFDNGLVCQRDLISWNS 404

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G++A+ ++ +M+  GF P + T++ +L AC+HAG ++KG+++F  + RD 
Sbjct: 405 MIAVYAHHGHGKEAIEMYDQMRKHGFKPSEVTYLNLLFACSHAGLVEKGMEFFKELVRDE 464

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            +  + EHY C++DL GR+GRLK+ L  +       +   +G +L AC  H+ V +A+EV
Sbjct: 465 SLPLREEHYTCLVDLCGRAGRLKDVLNFINCDDARLSRSFYGAILSACNVHSEVSIAKEV 524

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           +  ++     D G Y M+SNI+AA+G   K A +R++MK+   +K  G S V++ N+ H 
Sbjct: 525 VKKVLETGSDDAGTYVMMSNIYAASGKREKAAEMRMKMKEKGLKKQPGCSWVKIGNQTHL 584

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLK 588
           F V D+ HP+ E +  +++ L   ++
Sbjct: 585 FVVGDKSHPQFEALDSIVSDLRNKMR 610



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/382 (28%), Positives = 205/382 (53%), Gaps = 15/382 (3%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAGLVKGGELSEARRLFD 207
           D+     +I  Y K G   +  A++LF  +  R ++V+W +M++G ++  +LS A  LF 
Sbjct: 76  DVVTWTDVITGYIKLG--NMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQ 133

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           EMPER+ VSWNT++DGYA++G ++ A ELF+++P RN VSW+TM+    + G ++ A  L
Sbjct: 134 EMPERNIVSWNTMIDGYAQSGRIDKALELFDEMPERNTVSWNTMIKALVQRGRIDEAMNL 193

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F+RMP K ++ WT ++ G A+ G   EA RL+D M E  +     +  +++     +  +
Sbjct: 194 FERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERNII----SWNAMITGYTYNNRI 249

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
               ++   + +  F       N ++  + +   ++ A  +F+ M +K+++SW AM+ G 
Sbjct: 250 DEADQLFQVMPERDFAS----WNTMITGFIRNREINRACGLFDRMPQKNVISWTAMITGY 305

Query: 388 AMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
             + + E+AL +FS+M +D    P+  T+V +L AC+    + +G Q    + +      
Sbjct: 306 VENKENEEALKVFSKMLRDGCVKPNVGTYVSILSACSDLAGLVEGQQIHQLISKSVHQEN 365

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQS-MPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           +V     +I++  +SG L  A ++  + +  + + I W +++     H   + A E+ D 
Sbjct: 366 EVV-TSALINMYSKSGELIAARKMFDNGLVCQRDLISWNSMIAVYAHHGHGKEAIEMYDQ 424

Query: 506 LIRLKGSDPGNYTMLSNIFAAT 527
           + R  G  P   T L+ +FA +
Sbjct: 425 M-RKHGFKPSEVTYLNLLFACS 445



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 170/363 (46%), Gaps = 53/363 (14%)

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           +L + ++ S  +  +     +I  L K G+L+EAR+LFD +PERD V+W  ++ GY K G
Sbjct: 32  NLVRSIYSSSSKPRVPRPEWLIGKLCKVGKLAEARKLFDGLPERDVVTWTDVITGYIKLG 91

Query: 229 EMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
            M  A ELF+++  R N+V+W+ MV GY +   + +A+ LF  MP + +V W  +I GYA
Sbjct: 92  NMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSVAETLFQEMPERNIVSWNTMIDGYA 151

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           + G   +A  L+D+M E                                        NT 
Sbjct: 152 QSGRIDKALELFDEMPER---------------------------------------NTV 172

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
             N ++    + G +D AM++F  M  KD++SW AM+ GLA +G+ ++A  LF  M +  
Sbjct: 173 SWNTMIKALVQRGRIDEAMNLFERMPIKDVISWTAMVDGLAKNGKVDEARRLFDCMPERN 232

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKE 466
                 ++  ++   T+   ID+  Q F  M ERD+        +  MI    R+  +  
Sbjct: 233 I----ISWNAMITGYTYNNRIDEADQLFQVMPERDFA------SWNTMITGFIRNREINR 282

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A  L   MP + N I W  ++    ++   E A +V   ++R     P   T +S I +A
Sbjct: 283 ACGLFDRMP-QKNVISWTAMITGYVENKENEEALKVFSKMLRDGCVKPNVGTYVS-ILSA 340

Query: 527 TGD 529
             D
Sbjct: 341 CSD 343


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 316/570 (55%), Gaps = 36/570 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           + +C      +   A +IK  L +D  +  + I++    +++ LA+     +Q+P+V +Y
Sbjct: 35  IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVY 94

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N L +  V  S   ++  +++ M    V   ++TY  L+KA +  + F   + + A I+K
Sbjct: 95  NALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWK 152

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+   + +  +LID YS  G                                  + EAR
Sbjct: 153 FGFGFHVKIQTTLIDFYSATG---------------------------------RIREAR 179

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           ++FDEMPERD ++W T++  Y +  +M+ A  L  ++  +N  + + ++ GY   G++E 
Sbjct: 180 KVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LF++MP K ++ WT +I GY++    +EA  ++ +M E G+ PD+ T+ ++++ACA 
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G+L +G +VH    +  F  +  + +ALVDMY+KCGSL+ A+ VF  + KK+L  WN++
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 359

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLA HG  ++AL +F++M+ E   P+  TFV V  ACTHAG +D+G + + SM  DY 
Sbjct: 360 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 419

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I+  VEHYG M+ L  ++G + EAL L+ +M  EPNA+IWG LL  CR H  + +AE   
Sbjct: 420 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 479

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP-SGASSVEVDNEVHE 562
           + L+ L+  + G Y +L +++A    W  VA +R +M++   +K   G SS+ +D   H 
Sbjct: 480 NKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHL 539

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F+  D+ H  S+++  +++ +   +   G+
Sbjct: 540 FAAADKSHSASDEVCLLLDEIYDQMGLAGY 569


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 208/594 (35%), Positives = 315/594 (53%), Gaps = 76/594 (12%)

Query: 13  KRRLLEEKLQ--NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLA 68
           K+ L   +LQ  +L  CK++NQ KQ  A +I   L   P  A KL+  L       +  A
Sbjct: 9   KKPLNSNQLQLFSLESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYA 68

Query: 69  IKVFNDIQDPDVHLYNTLIRA-CVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKAC- 125
            ++F+ I  PDV +YNT+I+A  V  + +  + R+FL M +  G   + +T+ F+ KAC 
Sbjct: 69  HQLFDQIPKPDVFIYNTMIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACG 128

Query: 126 NGKNWFHLVQM-IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           NG       Q+ +HA+  K G   ++FV N++I  Y+  G+                   
Sbjct: 129 NGLGVLEGEQIRVHAI--KIGLESNLFVTNAMIRMYANWGL------------------- 167

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
                         + EARR+FD         W+   D Y                    
Sbjct: 168 --------------VDEARRVFD---------WSLDQDLY-------------------- 184

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
             SW+ M+ GY   G++  AK +FD M  + +V WT II+GY + G  KEA  L+ +M +
Sbjct: 185 --SWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQ 242

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G  P++ TL S LAACA    L  G  +H  I+K   K N  +  +L+DMYAKCG +D 
Sbjct: 243 TGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDF 302

Query: 365 AMSVFNGM--TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           A  VF+     K  +  WNAM+ G AMHG+ ++A+ LF +MK E   P+K TFV +L AC
Sbjct: 303 AAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNAC 362

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H   +++G  YF SM   YGI P++EHYGCM+DLLGRSG LKEA   V +MP+ P+A I
Sbjct: 363 SHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATI 422

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG LLGACR H  +E  + +   +  L     G + +L+N+++A+G W++   VR +++ 
Sbjct: 423 WGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEV 482

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           +  +K  G SS+E++   H+F V D+ HP+++Q+Y  ++ +   LK  G+  + 
Sbjct: 483 SGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEF 536


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  344 bits (882), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 200/580 (34%), Positives = 303/580 (52%), Gaps = 78/580 (13%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC--RQMGLAIKVFNDIQDPDVHLY 83
           +CK     KQ+ A  IK      P  A +L+  L L   R++  A K F+ I  P+   +
Sbjct: 24  RCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSW 83

Query: 84  NTLIRACVQ---------NSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHL 133
           NT+IRA            NSL A  +  F  M   G+   N FT+P +LKAC        
Sbjct: 84  NTIIRALADSDDDDLFHVNSLEALLY--FSHMLTDGLVEPNKFTFPCVLKACAKLARIEE 141

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +H  + K G   D FV ++L+  Y  C                              
Sbjct: 142 GKQLHGFVVKLGLVSDEFVRSNLVRVYVMC------------------------------ 171

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
              G + +A  LF          + T L+G                    N+V W+ M+ 
Sbjct: 172 ---GAMKDAHVLF----------YQTRLEG--------------------NVVLWNVMID 198

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           GY + GD+  ++ LFD MP K++V W ++ISG A+ G  KEA  ++  M+   + P+  T
Sbjct: 199 GYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVT 258

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM- 372
           L+S+L A +  G + LG  VH    K   + +  + +AL+DMY+KCGS+D A+ VF G+ 
Sbjct: 259 LVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIR 318

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            KK+ ++W+A++ GLAMHG+   AL  F RM+  G  P    ++GVL AC+HAG +++G 
Sbjct: 319 NKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGR 378

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
             +Y M    G+LP++EHYGCM+DLLGR+G L+EA +L+ +MPV+P+ +I   LLGAC+ 
Sbjct: 379 SIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKM 438

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  +E+ E +   L+     D G+Y  LSN+FA+ G+W  V  VRL+MK+   +K  G S
Sbjct: 439 HGNIEMGERIAKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCS 498

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +E+D  +HEF V D  HP++E I+ M+  +   L+ VG+
Sbjct: 499 WIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGY 538


>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
          Length = 551

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 313/581 (53%), Gaps = 72/581 (12%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           +L +  +  L  C       ++   +++L + +  Y+A +++      R++  A +VF  
Sbjct: 12  QLEDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQ 71

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------QEKGVFTDNFTYPFLLKACNG 127
           ++DP++HL+N +I+A  QN  +  A  V++ M        +     D FTYPF       
Sbjct: 72  VRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF------- 124

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                       L+  CG                  G   + L K++             
Sbjct: 125 ------------LLKACG------------------GTAALELGKQVHTH---------- 144

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
                +V+ G             +  A+  N++++ Y +AG++ LA ++F+++  R++VS
Sbjct: 145 -----VVRSG------------CDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVS 187

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W+ ++  +++ G M  A  LF+ MP KT+V WT ++SGY   G    A   +  M+  G 
Sbjct: 188 WNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGF 247

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PDD +++++L ACA+ G L LG  ++A   ++    +T++CNAL++MYAKCG +D A+ 
Sbjct: 248 EPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQ 307

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAG 426
           +F+GM  KD++SW+ ++ GLA HG+  +A+ LF+ M+ EG   P+  TFVG+L AC++AG
Sbjct: 308 LFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAG 367

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +D+G+ +F  M   YG+ P VEHYGC++DLLGRSG+++ AL LV+ MPV  +A +WG+L
Sbjct: 368 LVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSL 427

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           L ACR H  V+ A    + L+ L+  D GN  ML+N++AA   W+ VA+ R  ++    +
Sbjct: 428 LSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMR 487

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           K  G S +EV N V EF   + L  +   +  +++ L   L
Sbjct: 488 KTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHL 528


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 287/530 (54%), Gaps = 28/530 (5%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           K  N +  P    +NT +R   +     QA  ++  M   G   + FT+PF LK+C   +
Sbjct: 8   KSMNALSTP----WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALS 63

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS--MGERDIVSWN 187
              L    H  I K G   + FV   LI  Y K  +V    A+K+F       +  V +N
Sbjct: 64  LPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLV--DNARKVFEENFHSRKLTVCYN 121

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
           ++++G V   + SEA  LF +M E      +  L G   A    +  EL   +       
Sbjct: 122 ALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL------H 175

Query: 248 WSTMVWGYSKD--------------GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            ST+ +G+  D              G +  A+ LFD MP K L+ W  ++SGYA+ G+A 
Sbjct: 176 CSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLAT 235

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
               LY  M+  G+ PD  TL+ +L++CA  G   +G +V   I    F  N  + NAL+
Sbjct: 236 NVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALI 295

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           +MYA+CG+L  A +VF+GM ++ LVSW A++ G  MHG GE A+ LF  M   G  PD  
Sbjct: 296 NMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGT 355

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
            FV VL AC+HAG  D+G++YF  M+R+Y + P  EHY CM+DLLGR+GRLKEA  L++S
Sbjct: 356 AFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIES 415

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP++P+  +WG LLGAC+ H  VELAE   + +I L+  + G Y +LSNI++   +   V
Sbjct: 416 MPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGV 475

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
             +R+ MK+ + +K  G S VE+   VH F V D+ H +S++IY+++  L
Sbjct: 476 LRIRIMMKEKKLKKDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 525



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 13/256 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL     L    +K     D  +    I+    C  +  A K+F+++    +  +N ++ 
Sbjct: 167 NLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVS 226

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN L      ++ +M   GV  D  T   +L +C       +   +   I   G+  
Sbjct: 227 GYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTS 286

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + F+ N+LI+ Y++CG   ++ A+ +F  M ER +VSW ++I G    G    A +LF E
Sbjct: 287 NPFLNNALINMYARCG--NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKE 344

Query: 209 M----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV------SWSTMVWGYSKD 258
           M     E D  ++  +L   + AG  +   E F K+  RN         +S MV    + 
Sbjct: 345 MIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYF-KMMKRNYQLEPGPEHYSCMVDLLGRA 403

Query: 259 GDMEMAKLLFDRMPAK 274
           G ++ A+ L + MP K
Sbjct: 404 GRLKEAQTLIESMPIK 419


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 199/595 (33%), Positives = 319/595 (53%), Gaps = 28/595 (4%)

Query: 24  LHKCKNLNQTK--QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           L  C  L + +  ++    +K  +  D ++   LI   + C QM  A+KVF +   PDV 
Sbjct: 112 LKSCSGLQKLELGKMIHGFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVV 171

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           L+ ++I    QN     A   F  M   + V  D  T      AC   + F+L + +H  
Sbjct: 172 LWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGF 231

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G+   + + NS+++ Y K G   + +A  LF  M  +DI+SW+SM+A     G  +
Sbjct: 232 VKRRGFDTKLCLANSILNLYGKTG--SIRIAANLFREMPYKDIISWSSMVACYADNGAET 289

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEM-----------NLAFELFEKIPHRNI 245
            A  LF+EM ++    + V+  + L   A +  +           N  FEL       +I
Sbjct: 290 NALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFEL-------DI 342

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              + ++  Y K    E A  LF+RMP K +V W ++ SGYAE GMA ++  ++  M   
Sbjct: 343 TVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSN 402

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G +PD   L+ ILAA +E G++   + +HA + K  F  N  +  +L+++YAKC S+DNA
Sbjct: 403 GTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNA 462

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTH 424
             VF G+   D+V+W++++     HGQGE+AL L  +M +     P+  TFV +L AC+H
Sbjct: 463 NKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSH 522

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AG I++G++ F+ M  +Y ++P +EHYG M+DLLGR G L +AL ++ +MP++    +WG
Sbjct: 523 AGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWG 582

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LLGACR H  +++ E     L  L  +  G YT+LSNI+    +W+  A +R  +K+ R
Sbjct: 583 ALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENR 642

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
            +K  G S VE+ NEVH F   D+ H +S+QIY+M+  L   ++  G+   L  +
Sbjct: 643 LKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYEMLRKLDARMREEGYDPDLQTQ 697



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 161/599 (26%), Positives = 254/599 (42%), Gaps = 115/599 (19%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           KRR L  KL  L  C +     QL +Q +K+ L  D ++  KL    A    +  A K+F
Sbjct: 2   KRRDLLVKL--LETCCSKISITQLHSQCLKVGLALDSFVVTKLNVLYARYASLCHAHKLF 59

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT---DNFTYPFLLKACNGKN 129
            +     V+L+N L+R+        +   +F  M    V     DN+T    LK+C+G  
Sbjct: 60  EETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQ 119

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L +MIH  + K     D+FV ++LI+ YSKCG   ++ A K+F    + D+V W S+
Sbjct: 120 KLELGKMIHGFLKK-KIDSDMFVGSALIELYSKCG--QMNDAVKVFTEYPKPDVVLWTSI 176

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVS--------------------------------- 216
           I G  + G    A   F  M   + VS                                 
Sbjct: 177 ITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRG 236

Query: 217 -------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
                   N+IL+ Y K G + +A  LF ++P+++I+SWS+MV                 
Sbjct: 237 FDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMV----------------- 279

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
                         + YA+ G    A  L+++M +  ++ +  T+IS L ACA S  L  
Sbjct: 280 --------------ACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEE 325

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++H     Y F+ +  V  AL+DMY KC S +NA+ +FN M KKD+VSW  +  G A 
Sbjct: 326 GKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAE 385

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-----------CTHA----------GFI 428
            G   K+LG+F  M   G  PD    V +L A           C HA           FI
Sbjct: 386 IGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEFI 445

Query: 429 DKGVQYFY----SMERDYGILPQVEH-----YGCMIDLLGRSGRLKEALRLVQSMP---- 475
              +   Y    S++    +   + H     +  +I   G  G+ +EAL+L   M     
Sbjct: 446 GASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSD 505

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATGDWNK 532
           V+PN + + ++L AC     +E   ++   ++      P   +Y ++ ++    G+ +K
Sbjct: 506 VKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDK 564


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/562 (34%), Positives = 304/562 (54%), Gaps = 73/562 (12%)

Query: 46  QRDPYIAP--KLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           ++ P   P  KL  S A   ++  ++ +F   Q+P V  +  +I       L+ QA   +
Sbjct: 4   KKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFY 63

Query: 104 LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
             M  +GV  + FT+  +LK C         + +H+   K G+  D++V   L+D Y++ 
Sbjct: 64  AQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYAR- 118

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
                                           GG++  A++LFD MPE+  VS   +L  
Sbjct: 119 --------------------------------GGDVVSAQQLFDTMPEKSLVSLTAMLTC 146

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           YAK GE++ A  LF+ +  R+ V W+ M+ GY+++                         
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQN------------------------- 181

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
                 GM  EA  L+ +M +A  KP++ T++S+L+AC + G L  G  VH+ I     +
Sbjct: 182 ------GMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ 235

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            N +V  ALVDMY+KCGSL++A  VF+ +  KD+V+WN+M+ G AM G  ++AL LF  M
Sbjct: 236 FNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSM 295

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
              G  P   TF+G+L AC H+G++ +G   F  M+ +YGI P++EHYGCM++LLGR+G 
Sbjct: 296 CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGH 355

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           +++A  LV++M +EP+ ++WGTLLGACR H  + L E++++ L+    ++ G Y +LSNI
Sbjct: 356 VEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNI 415

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +AA G+W+ VA +R  MK +  +K  G SS+EV+N+VHEF      HPK ++IY M+  +
Sbjct: 416 YAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEI 475

Query: 584 GKDLKPVGHAAKLSA---EIGE 602
              LK  G+  +      +IGE
Sbjct: 476 NGWLKSHGYTPQTDIVLHDIGE 497



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 103/269 (38%), Gaps = 61/269 (22%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           +Q + ++   L+   + C  +  A  VF+ I D DV  +N++I        + +A ++F 
Sbjct: 234 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFK 293

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
            M   G+   N T+  +L AC    W              G+  DIF  N + D Y   G
Sbjct: 294 SMCRMGLHPTNITFIGILSACGHSGWV-----------TEGW--DIF--NKMKDEY---G 335

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILDG 223
           +              E  I  +  M+  L + G + +A  L   M  E D V W T+L  
Sbjct: 336 I--------------EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGA 381

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
               G++ L  ++ E +  +N+ +  T +                            ++ 
Sbjct: 382 CRLHGKIALGEKIVELLVDQNLANSGTYI----------------------------LLS 413

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           + YA  G     ARL   M+++G+K + G
Sbjct: 414 NIYAAVGNWDGVARLRTMMKDSGVKKEPG 442


>gi|115476932|ref|NP_001062062.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|42409025|dbj|BAD10278.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624031|dbj|BAF23976.1| Os08g0481000 [Oryza sativa Japonica Group]
 gi|215715342|dbj|BAG95093.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222640747|gb|EEE68879.1| hypothetical protein OsJ_27695 [Oryza sativa Japonica Group]
          Length = 563

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/559 (34%), Positives = 303/559 (54%), Gaps = 37/559 (6%)

Query: 56  ISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR-VFLDMQEKGVFTD 114
           I++LA    +  A +VF+ +   D   +N L+ A  +   +  A R +F DM  + V + 
Sbjct: 23  ITALARAGDVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSRNVISW 82

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV--------PNSLIDSYSK--CG 164
           N                       ++I  C   GD+          P   + S++    G
Sbjct: 83  N-----------------------SIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAG 119

Query: 165 VV---GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL 221
           +V    +  A+ LF  M ER++VS+ +M+ GL + GE++ AR LFD MP R+ VSW  ++
Sbjct: 120 LVRLGSMEDARSLFDQMPERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLVSWAAMI 179

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
            GY     +  A +LFE +P +N+V+ + M+ GY K+GD++ A+ LFD + AK ++ W  
Sbjct: 180 SGYVDNNMLEEARKLFEAMPEKNVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNA 239

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           IISGY   G+ +EA +LY  M   G+KPD  TLI++L AC+   LL  G   HA + K  
Sbjct: 240 IISGYVHNGLGEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQGRSTHAVVIKAM 299

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            + + ++CNAL+ MY+KCG++D +  VF  +  +D+VSWN ++   A HG+ +K + LF 
Sbjct: 300 LESSISICNALMTMYSKCGNVDESELVFMSLKSQDIVSWNTIIAAYAQHGRYQKVIALFH 359

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M+  G  P+  TF+ +L AC HAG +D+ ++ F  M   Y I P+ EHY C++D+L R+
Sbjct: 360 EMELCGLIPNDITFLSMLSACGHAGRVDESLKLFDLMFSKYAISPRAEHYACIVDILSRA 419

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G+L++A   ++ MP E    +WGTLL A + H  V+L E     L+       G Y MLS
Sbjct: 420 GQLEKACSYIKEMPSEAEKNVWGTLLCASQTHGNVQLGELAAKMLVLSDFESSGAYVMLS 479

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+AA G W +V  VR QMK+   +K  G S  E+ ++VH F   D  HP+ + I   + 
Sbjct: 480 NIYAAAGMWGEVNRVRSQMKEKGVKKQPGHSWTEIADKVHMFVGGDASHPEMDMILSELR 539

Query: 582 TLGKDLKPVGHAAKLSAEI 600
            +   ++ V    ++  E+
Sbjct: 540 KISFHMQMVTDKTQMMEEL 558



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 200/385 (51%), Gaps = 23/385 (5%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG-ELSEARRLFDEMPER 212
           N  I + ++ G   V+ A+++F +M  RD VSWN+++  L + G +L  AR LFD+MP R
Sbjct: 20  NQRITALARAG--DVAAARRVFDAMPRRDAVSWNALLTALWRAGRDLPAARSLFDDMPSR 77

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + +SWN+I+ G    G++  A   F + P RN+ SW+ M+ G  + G ME A+ LFD+MP
Sbjct: 78  NVISWNSIIAGCLAHGDLAAASAYFARAPRRNVASWNAMLAGLVRLGSMEDARSLFDQMP 137

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + +V +T ++ G A  G    A  L+D M    L     +  ++++   ++ +L    K
Sbjct: 138 ERNVVSYTTMVDGLARCGEVASARELFDAMPTRNLV----SWAAMISGYVDNNMLEEARK 193

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +  ++ +     N   C A++  Y K G L NA  +F+G+  KD++SWNA++ G   +G 
Sbjct: 194 LFEAMPEK----NVVACTAMITGYCKEGDLQNARRLFDGIRAKDVISWNAIISGYVHNGL 249

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           GE+A  L+  M  EG  PD+ T + +L AC+    + +G +  +++     +   +    
Sbjct: 250 GEEATKLYIIMLREGIKPDQATLIALLTACSSLALLRQG-RSTHAVVIKAMLESSISICN 308

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIR 508
            ++ +  + G + E+  +  S+  + + + W T++ A  +H      + L  E+  C   
Sbjct: 309 ALMTMYSKCGNVDESELVFMSLKSQ-DIVSWNTIIAAYAQHGRYQKVIALFHEMELC--- 364

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKV 533
             G  P + T LS + +A G   +V
Sbjct: 365 --GLIPNDITFLS-MLSACGHAGRV 386


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 222/704 (31%), Positives = 341/704 (48%), Gaps = 116/704 (16%)

Query: 4   PIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           P+R     +   LLE  +Q+    K+L + K++    +K     D  +  KL      C 
Sbjct: 2   PLRFEVKNNYLHLLEACIQS----KSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN 57

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           Q+ LA ++F++I +P V L+N +IRA   N     A  ++  M   GV  + +TYPF+LK
Sbjct: 58  QVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC+G         IH+     G   D+FV  +L+D Y+KCG+  +  A++LF SM  RD+
Sbjct: 118 ACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI--LVEAQRLFSSMSHRDV 175

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER------------------------------- 212
           V+WN+MIAG    G   +A +L  +M E                                
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 213 --------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
                     V    +LD YAK   +  A ++F+ +  RN VSWS M+ GY     M+ A
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEA 295

Query: 265 KLLFDRMPAKTLV---PWTI-------------------------------------IIS 284
             LFD+M  K  +   P T+                                     ++S
Sbjct: 296 LELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLS 355

Query: 285 GYAEKGMAKEAARLYDQ-------------------------------MEEAGLKPDDGT 313
            YA+ G+  +A R +D+                               M+ +G+ PD  T
Sbjct: 356 MYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTT 415

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           ++ +L AC+    L  G   H  +    F  +T +CNAL+DMY+KCG +  A  VFN M 
Sbjct: 416 MLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD 475

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           + D+VSWNAM+ G  +HG G +ALGLF  +   G  PD  TF+ +L +C+H+G + +G  
Sbjct: 476 RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRL 535

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           +F +M RD+ I+P++EH  CM+D+LGR+G + EA   +++MP EP+  IW  LL ACR H
Sbjct: 536 WFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH 595

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +EL EEV   +  L     GN+ +LSNI++A G W+  A++R+  K    +K  G S 
Sbjct: 596 KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSW 655

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +E++  VH F   DQ H +  QI + +  L  ++K +G+ A+ S
Sbjct: 656 IEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECS 699


>gi|119638439|gb|ABL85030.1| hypothetical protein 57h21.3 [Brachypodium sylvaticum]
          Length = 618

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 158/420 (37%), Positives = 268/420 (63%), Gaps = 4/420 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A+KLF  M ER++++W +M+AG+ + G + EAR LFD MPER+ VSWN ++ GYA+   +
Sbjct: 179 ARKLFDRMPERNVMAWTTMVAGIARSGSVDEARALFDGMPERNVVSWNAMISGYARNHRI 238

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + A +LF K+P R+I SW+ M+ G+ +D D+E A+ LFD+MP + ++ WT +++GY +  
Sbjct: 239 DEAHDLFMKMPTRDIASWNIMITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSM 298

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
            ++ A ++++ M   G++P+  T +  + AC+    L  G +VH  I K  F+ +T + +
Sbjct: 299 QSETALQIFNGMLVEGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIES 358

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+++YAKCG +  A  VF+   +KD++SWN M+   A HG G +A+ L+ +M+++G+ P
Sbjct: 359 TLMNLYAKCGEIRLARKVFDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKP 418

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           +  T+VG+L AC+H+G +D+G++ F  M +D  I  + EHY C+IDL  R+GRL +A RL
Sbjct: 419 NDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRL 478

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           +  + VEP++ +W  LLG C  H    + +     L+  + ++ G YT+L NI+A+ G W
Sbjct: 479 IHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKW 538

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
            + A +R +M     +K  G S +EV+N+VH F   D+ H +S+    +IN+L +D+  +
Sbjct: 539 KEAAKIRSEMNDRGLKKQPGCSWIEVENKVHVFVSRDKSHSESD----LINSLLQDIHDI 594



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 114/409 (27%), Positives = 195/409 (47%), Gaps = 57/409 (13%)

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           G +  PN  +   +  G   VS A++LF    +RD+VSW +++A   + G L +AR LFD
Sbjct: 33  GHVQDPNRRVAELAAAG--RVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFD 90

Query: 208 EMPE--RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
             P+  R+ V+W  +L GYA+AG ++ A  LF+++P RN+VSW+TM+  Y+  G +  A 
Sbjct: 91  R-PDARRNVVTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAW 149

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LFD MP +    W I+++     G   +A +L+D+M E  +        +++A  A SG
Sbjct: 150 TLFDGMPVRDAGSWNILLAALVRSGNMDKARKLFDRMPERNVM----AWTTMVAGIARSG 205

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            +     +   + +     N    NA++  YA+   +D A  +F  M  +D+ SWN M+ 
Sbjct: 206 SVDEARALFDGMPER----NVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMIT 261

Query: 386 GL--------------------------AMHG-----QGEKALGLFSRMKDEGFGPDKYT 414
           G                            M+G     Q E AL +F+ M  EG  P++ T
Sbjct: 262 GFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVT 321

Query: 415 FVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           F+G + AC++   + +G Q    + +  +     +E    +++L  + G ++ A R V  
Sbjct: 322 FLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIE--STLMNLYAKCGEIRLA-RKVFD 378

Query: 474 MPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYT 518
           +  E + I W  ++ A   H     A+ L E++ +     KG  P + T
Sbjct: 379 LSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQE-----KGYKPNDVT 422



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 170/348 (48%), Gaps = 22/348 (6%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNI 245
           N  +A L   G +S+ARRLFD  P+RD VSW  ++  YA+ G ++ A  LF++    RN+
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYARQGMLHDARALFDRPDARRNV 98

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           V+W+ ++ GY++ G ++ A+ LF RMP + +V W  ++  Y   G  ++A  L+D M   
Sbjct: 99  VTWTALLSGYARAGRVDEAEALFQRMPERNVVSWNTMLEAYTSAGRVRDAWTLFDGMP-- 156

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
               D G+   +LAA   SG +    K+   + +     N      +V   A+ GS+D A
Sbjct: 157 --VRDAGSWNILLAALVRSGNMDKARKLFDRMPER----NVMAWTTMVAGIARSGSVDEA 210

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            ++F+GM ++++VSWNAM+ G A + + ++A  LF +M             G +      
Sbjct: 211 RALFDGMPERNVVSWNAMISGYARNHRIDEAHDLFMKMPTRDIASWNIMITGFI----QD 266

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE---PNAII 482
             +++    F  M R       V  +  M++   +S + + AL++   M VE   PN + 
Sbjct: 267 RDLERAQDLFDKMPR-----RNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPNQVT 321

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGS-DPGNYTMLSNIFAATGD 529
           +   + AC     +   ++V   + +     D    + L N++A  G+
Sbjct: 322 FLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGE 369



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/345 (22%), Positives = 153/345 (44%), Gaps = 61/345 (17%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I+     R +  A  +F+ +   +V  + T++   +Q+  +  A ++F  M  +G+  +
Sbjct: 259 MITGFIQDRDLERAQDLFDKMPRRNVITWTTMMNGYLQSMQSETALQIFNGMLVEGIRPN 318

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T+   + AC+        Q +H +I K  +  D F+ ++L++ Y+KCG   + LA+K+
Sbjct: 319 QVTFLGAVDACSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCG--EIRLARKV 376

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEM 230
           F    E+D++SWN MIA     G   EA  L+++M E+    + V++  +L   + +G +
Sbjct: 377 FDLSKEKDVISWNGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLV 436

Query: 231 NLAFELFE--------------------------------KIPHRNIVSWSTMVW----- 253
           +    +FE                                ++ H   V  S+ VW     
Sbjct: 437 DEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLG 496

Query: 254 -----GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                G    GD+  A+ L +  P      +T++ + YA  G  KEAA++  +M + GLK
Sbjct: 497 GCNSHGNESIGDLA-ARNLLEAEP-NNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLK 554

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
              G        C+    + +  KVH  +++ +    +++ N+L+
Sbjct: 555 KQPG--------CS---WIEVENKVHVFVSRDKSHSESDLINSLL 588



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 26/235 (11%)

Query: 27  CKNL---NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL   ++ +Q+   I K   Q D +I   L++  A C ++ LA KVF+  ++ DV  +
Sbjct: 329 CSNLAGLSEGQQVHQMICKTSFQFDTFIESTLMNLYAKCGEIRLARKVFDLSKEKDVISW 388

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQM 136
           N +I A   + +  +A  ++  MQEKG   ++ TY  LL AC+       G   F  +  
Sbjct: 389 NGMIAAYAHHGVGVEAIHLYEKMQEKGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVK 448

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL--FMSMGERDIVSWNSMIAGLV 194
             ++  +  ++        LID  S+ G +G   AK+L  F+ +     V WN+++ G  
Sbjct: 449 DRSIAVRDEHY------TCLIDLCSRAGRLGD--AKRLIHFLKVEPSSTV-WNALLGGCN 499

Query: 195 KGGELS----EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
             G  S     AR L +  P  +A ++  + + YA AG+   A ++  ++  R +
Sbjct: 500 SHGNESIGDLAARNLLEAEPN-NAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGL 553


>gi|226530385|ref|NP_001145846.1| CRR4 [Zea mays]
 gi|219884683|gb|ACL52716.1| unknown [Zea mays]
 gi|414878658|tpg|DAA55789.1| TPA: CRR4 [Zea mays]
          Length = 601

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 306/574 (53%), Gaps = 45/574 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-- 125
           A  +F+ +  P   L    +    + SL+ +       +  +G    +   P +LK+C  
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           +  +        HAL+   G  GD+FV  +L+D Y+K G   +  A   F  M  +D + 
Sbjct: 91  SAASCQGTQTHCHALVR--GMLGDVFVQTALVDFYAKNG--NMDSAVMAFEEMPIKDPIP 146

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-- 243
            N +I G  + G++ EARRLFD MP + + SWN+++  YA  GE   A  LF+++     
Sbjct: 147 MNCLITGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGA 206

Query: 244 --NIVSWSTMVWGYSKDGDMEM----------------------------------AKLL 267
             N ++ +T+    +K GD+E                                   A+  
Sbjct: 207 SPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARRE 266

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FDRMP + +V W+ +I+GY+  G   E+  L+++M+    KP++ TL+ +L+ACA+ G  
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++ + I        + + +AL+DMY KCG +  A  VF+ M +K +++WN+M+ GL
Sbjct: 327 ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGL 386

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-YGILP 446
           A++G  E A+ L+  M  +G  P++ TF+ +L ACTHAG +DKG+ +F  M+++     P
Sbjct: 387 ALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASP 446

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           QVEH  C++DLL +SGRL EA + +  M VEPNA+IW TLL ACR H  VELA+     L
Sbjct: 447 QVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKL 506

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           + L+ +    Y +LSNI+A  G W  V  +R  M+    QK S  S +E+D EVH F V 
Sbjct: 507 VVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQ 566

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           D  HP+S +IY +++ LG  L+      +L +E+
Sbjct: 567 DTYHPRSAEIYNVVDGLGLQLERTSPDHELISEV 600



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 142/318 (44%), Gaps = 23/318 (7%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L   ++  A + + DLQ +  +   L+     CR +  A + F+ +   DV  ++T
Sbjct: 222 KTGDLETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWST 280

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I     N    ++  +F  M+      +  T   +L AC       L + I + I    
Sbjct: 281 MIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQT 340

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y+KCG   V+ A+ +F  M ++ +++WNSMI GL   G   +A  L
Sbjct: 341 LPLTSYLGSALIDMYTKCG--HVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIAL 398

Query: 206 FDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR------NIVSWSTMVWGY 255
           + EM     + + +++  +L     AG ++     F+++          +   + +V   
Sbjct: 399 YGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLL 458

Query: 256 SKDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDD 311
            K G + E  K + D       V WT ++S    +A+  +AK AA      +   L+P+ 
Sbjct: 459 CKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAG-----KLVVLEPNS 513

Query: 312 GTLISILAAC-AESGLLG 328
            ++  +L+   A++GL G
Sbjct: 514 SSIYVLLSNIYADAGLWG 531


>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
 gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
 gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
          Length = 551

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 313/581 (53%), Gaps = 72/581 (12%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           +L +  +  L  C       ++   +++L + +  Y+A +++      R++  A +VF  
Sbjct: 12  QLEDAVMARLRACVTFRDLLRVHGHVVRLRISQSSYLATQIVHLCNAHRRVTHAARVFAQ 71

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------QEKGVFTDNFTYPFLLKACNG 127
           ++DP++HL+N +I+A  QN  +  A  V++ M        +     D FTYPF       
Sbjct: 72  VRDPNLHLHNAMIKAYAQNHQHRDAVAVYIRMLRCPTSPPDGHAGGDRFTYPF------- 124

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                       L+  CG                  G   + L K++             
Sbjct: 125 ------------LLKACG------------------GTAALELGKQVHTH---------- 144

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
                +V+ G             +  A+  N++++ Y +AG++ LA ++F+++  R++VS
Sbjct: 145 -----VVRSG------------CDSSAIVQNSLIEMYTRAGDLALAHKVFDEMRERDVVS 187

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W+ ++  +++ G M  A  LF+ MP KT+V WT ++SGY   G    A   +  M+  G 
Sbjct: 188 WNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVDAFRSMQTEGF 247

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PDD +++++L ACA+ G L LG  ++A   ++    +T++CNAL++MYAKCG +D A+ 
Sbjct: 248 EPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGMLTSTHICNALMEMYAKCGCIDQALQ 307

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAG 426
           +F+GM  KD++SW+ ++ GLA HG+  +A+ LF+ M+ EG   P+  TFVG+L AC++AG
Sbjct: 308 LFDGMADKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNVITFVGLLSACSYAG 367

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +D+G+ +F  M   YG+ P VEHYGC++DLLGRSG+++ AL LV+ MPV  +A +WG+L
Sbjct: 368 LVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVRDMPVPADAKVWGSL 427

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           L ACR H  V+ A    + L+ L+  D GN  ML+N++AA   W+ VA+ R  ++    +
Sbjct: 428 LSACRSHGDVDTAVLAAERLVELEPDDVGNLVMLANVYAAARRWSDVASTRKAIRSRSMR 487

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           K  G S +EV N V EF   + L  +   +  +++ L   L
Sbjct: 488 KTPGCSLIEVGNVVREFVAGEGLSSELGGLAGVLDILASHL 528


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 307/571 (53%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN  +QL A  IK     D  +   ++   A    +  A + F  + +  V   N ++  
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+  L  +A  +F  M    +  D  +   +  AC     +   Q +H L  K G+  D
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V N+++D Y KC    +  A  +F  M ++D VSWN++IA L + G   +    F+EM
Sbjct: 386 ICVNNAVLDLYGKCK--ALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443

Query: 210 ----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
                + D  ++ ++L   A    +     + +K+    + S     ST+V  Y K G +
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 503

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ L DR+  + +V W  I+SG++    ++EA + + +M + GLKPD  T  ++L  C
Sbjct: 504 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 563

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    + LG ++H  I K     +  + + LVDMYAKCG + +++ VF  + K+D VSWN
Sbjct: 564 ANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWN 623

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ G A+HG G +AL +F RM+ E   P+  TFV VL AC+H G  D G +YF+ M   
Sbjct: 624 AMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTH 683

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y + PQ+EH+ CM+D+LGRS   +EA++ + SMP + +A+IW TLL  C+    VE+AE 
Sbjct: 684 YKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAEL 743

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               ++ L   D   Y +LSN++A +G W  V+  R  +K+ R +K  G S +EV +E+H
Sbjct: 744 AASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 803

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ HP+S ++Y+M+N L  ++K  G+
Sbjct: 804 GFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 834



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 221/482 (45%), Gaps = 15/482 (3%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      ++++ +    +  A+ +F+ + DPDV  +N L+    Q  +  ++  +F++
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  +GV  D  T+  LLK+C+      L   +HAL  K G   D+   ++L+D Y KC  
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD-AVSWNTILDGY 224
           +  +L    F  M ER+ VSW + IAG V+  +      LF EM      VS  +    +
Sbjct: 200 LDDALC--FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 257

Query: 225 AKAGEMNL--------AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                M+         A  +  K     +V  + +V  Y+K   +  A+  F  +P  T+
Sbjct: 258 RSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLPNHTV 316

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
                ++ G    G+  EA  L+  M  + ++ D  +L  + +ACAE+     G +VH  
Sbjct: 317 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCL 376

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             K  F  +  V NA++D+Y KC +L  A  +F GM +KD VSWNA++  L  +G  +  
Sbjct: 377 AIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 436

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           +  F+ M   G  PD +T+  VL AC     ++ G+     + +  G+         ++D
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS-GLGSDAFVASTVVD 495

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  + G + EA +L   +  +   + W  +L     +   E A++    ++ + G  P +
Sbjct: 496 MYCKCGIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDM-GLKPDH 553

Query: 517 YT 518
           +T
Sbjct: 554 FT 555



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 177/369 (47%), Gaps = 12/369 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + K   Q +Q+    IK     D  +   ++     C+ +  A  +F  ++  D   +N 
Sbjct: 363 ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 422

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I A  QN         F +M   G+  D+FTY  +LKAC          M+H  + K G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D FV ++++D Y KCG+  +  A+KL   +G + +VSWN++++G     E  EA++ 
Sbjct: 483 LGSDAFVASTVVDMYCKCGI--IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKF 540

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           F EM +     D  ++ T+LD  A    + L  ++  +I  + ++      ST+V  Y+K
Sbjct: 541 FSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 600

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GDM  + L+F+++  +  V W  +I GYA  G+  EA R++++M++  + P+  T +++
Sbjct: 601 CGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAV 660

Query: 318 LAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KK 375
           L AC+  GL   G +  H     Y+ +        +VD+  +      A+   N M  + 
Sbjct: 661 LRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQA 720

Query: 376 DLVSWNAML 384
           D V W  +L
Sbjct: 721 DAVIWKTLL 729



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 155/319 (48%), Gaps = 18/319 (5%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N +L  YA+      A  +F+ +P R+ VSW+TM+  YS  GD+  A  LFD MP   +V
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  ++SGY ++GM +E+  L+ +M   G+ PD  T   +L +C+    L LG++VHA  
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALA 175

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K   + +    +ALVDMY KC SLD+A+  F GM +++ VSW A + G   + Q  + L
Sbjct: 176 VKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGL 235

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-------YSMERDYGILPQVEH 450
            LF  M+  G G  + ++     +C     ++ G Q         +S +R  G       
Sbjct: 236 ELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT------ 289

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
              ++D+  ++  L +A R    +P          ++G  R    +E A  +   +IR  
Sbjct: 290 --AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIE-AMGLFQFMIR-- 344

Query: 511 GSDPGNYTMLSNIFAATGD 529
            S   +   LS +F+A  +
Sbjct: 345 SSIRFDVVSLSGVFSACAE 363



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 178/413 (43%), Gaps = 44/413 (10%)

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+    FV N L+  Y++    G + A+++F +M  RD VSWN+M+      G++S A  
Sbjct: 47  GFVPTAFVSNCLLQMYAR--CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVA 104

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--------------------- 243
           LFD MP+ D VSWN ++ GY + G    + +LF ++  R                     
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164

Query: 244 ------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
                             ++ + S +V  Y K   ++ A   F  MP +  V W   I+G
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG 224

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
             +         L+ +M+  GL     +  S   +CA    L  G ++HA   K +F  +
Sbjct: 225 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 284

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V  A+VD+YAK  SL +A   F G+    + + NAM+ GL   G G +A+GLF  M  
Sbjct: 285 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 344

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
                D  +  GV  AC       +G Q  + +    G    +     ++DL G+   L 
Sbjct: 345 SSIRFDVVSLSGVFSACAETKGYFQG-QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALM 403

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           EA  + Q M  + +++ W  ++ A  ++   +      + ++R  G  P ++T
Sbjct: 404 EAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF-GMKPDDFT 454



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 90/224 (40%), Gaps = 35/224 (15%)

Query: 300 DQMEEAGLKPDDGTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           +Q +   + P   T   +  +CA++G   L  G   HA +    F     V N L+ MYA
Sbjct: 4   EQQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYA 63

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD------------ 405
           +C     A  VF+ M ++D VSWN ML   +  G    A+ LF  M D            
Sbjct: 64  RCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSG 123

Query: 406 -------------------EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
                               G  PD+ TF  +L +C+    +  GVQ  +++    G+  
Sbjct: 124 YCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ-VHALAVKTGLEI 182

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
            V     ++D+ G+   L +AL     MP E N + WG  +  C
Sbjct: 183 DVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 225


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 307/571 (53%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN  +QL A  IK     D  +   ++   A    +  A + F  + +  V   N ++  
Sbjct: 308 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 367

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+  L  +A  +F  M    +  D  +   +  AC     +   Q +H L  K G+  D
Sbjct: 368 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 427

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V N+++D Y KC    +  A  +F  M ++D VSWN++IA L + G   +    F+EM
Sbjct: 428 ICVNNAVLDLYGKCK--ALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 485

Query: 210 ----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
                + D  ++ ++L   A    +     + +K+    + S     ST+V  Y K G +
Sbjct: 486 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 545

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ L DR+  + +V W  I+SG++    ++EA + + +M + GLKPD  T  ++L  C
Sbjct: 546 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 605

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    + LG ++H  I K     +  + + LVDMYAKCG + +++ VF  + K+D VSWN
Sbjct: 606 ANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWN 665

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ G A+HG G +AL +F RM+ E   P+  TFV VL AC+H G  D G +YF+ M   
Sbjct: 666 AMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTH 725

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y + PQ+EH+ CM+D+LGRS   +EA++ + SMP + +A+IW TLL  C+    VE+AE 
Sbjct: 726 YKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAEL 785

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               ++ L   D   Y +LSN++A +G W  V+  R  +K+ R +K  G S +EV +E+H
Sbjct: 786 AASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 845

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ HP+S ++Y+M+N L  ++K  G+
Sbjct: 846 GFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 876



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 221/482 (45%), Gaps = 15/482 (3%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      ++++ +    +  A+ +F+ + DPDV  +N L+    Q  +  ++  +F++
Sbjct: 122 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 181

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  +GV  D  T+  LLK+C+      L   +HAL  K G   D+   ++L+D Y KC  
Sbjct: 182 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 241

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD-AVSWNTILDGY 224
           +  +L    F  M ER+ VSW + IAG V+  +      LF EM      VS  +    +
Sbjct: 242 LDDALC--FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 299

Query: 225 AKAGEMNL--------AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                M+         A  +  K     +V  + +V  Y+K   +  A+  F  +P  T+
Sbjct: 300 RSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLPNHTV 358

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
                ++ G    G+  EA  L+  M  + ++ D  +L  + +ACAE+     G +VH  
Sbjct: 359 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCL 418

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             K  F  +  V NA++D+Y KC +L  A  +F GM +KD VSWNA++  L  +G  +  
Sbjct: 419 AIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 478

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           +  F+ M   G  PD +T+  VL AC     ++ G+     + +  G+         ++D
Sbjct: 479 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS-GLGSDAFVASTVVD 537

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  + G + EA +L   +  +   + W  +L     +   E A++    ++ + G  P +
Sbjct: 538 MYCKCGIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDM-GLKPDH 595

Query: 517 YT 518
           +T
Sbjct: 596 FT 597



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 177/369 (47%), Gaps = 12/369 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + K   Q +Q+    IK     D  +   ++     C+ +  A  +F  ++  D   +N 
Sbjct: 405 ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 464

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I A  QN         F +M   G+  D+FTY  +LKAC          M+H  + K G
Sbjct: 465 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 524

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D FV ++++D Y KCG+  +  A+KL   +G + +VSWN++++G     E  EA++ 
Sbjct: 525 LGSDAFVASTVVDMYCKCGI--IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKF 582

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           F EM +     D  ++ T+LD  A    + L  ++  +I  + ++      ST+V  Y+K
Sbjct: 583 FSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 642

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GDM  + L+F+++  +  V W  +I GYA  G+  EA R++++M++  + P+  T +++
Sbjct: 643 CGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAV 702

Query: 318 LAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KK 375
           L AC+  GL   G +  H     Y+ +        +VD+  +      A+   N M  + 
Sbjct: 703 LRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQA 762

Query: 376 DLVSWNAML 384
           D V W  +L
Sbjct: 763 DAVIWKTLL 771



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 155/319 (48%), Gaps = 18/319 (5%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N +L  YA+      A  +F+ +P R+ VSW+TM+  YS  GD+  A  LFD MP   +V
Sbjct: 98  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 157

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  ++SGY ++GM +E+  L+ +M   G+ PD  T   +L +C+    L LG++VHA  
Sbjct: 158 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALA 217

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K   + +    +ALVDMY KC SLD+A+  F GM +++ VSW A + G   + Q  + L
Sbjct: 218 VKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGL 277

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-------YSMERDYGILPQVEH 450
            LF  M+  G G  + ++     +C     ++ G Q         +S +R  G       
Sbjct: 278 ELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT------ 331

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
              ++D+  ++  L +A R    +P          ++G  R    +E A  +   +IR  
Sbjct: 332 --AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIE-AMGLFQFMIR-- 386

Query: 511 GSDPGNYTMLSNIFAATGD 529
            S   +   LS +F+A  +
Sbjct: 387 SSIRFDVVSLSGVFSACAE 405



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 178/413 (43%), Gaps = 44/413 (10%)

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+    FV N L+  Y++    G + A+++F +M  RD VSWN+M+      G++S A  
Sbjct: 89  GFVPTAFVSNCLLQMYAR--CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVA 146

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--------------------- 243
           LFD MP+ D VSWN ++ GY + G    + +LF ++  R                     
Sbjct: 147 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 206

Query: 244 ------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
                             ++ + S +V  Y K   ++ A   F  MP +  V W   I+G
Sbjct: 207 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG 266

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
             +         L+ +M+  GL     +  S   +CA    L  G ++HA   K +F  +
Sbjct: 267 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 326

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V  A+VD+YAK  SL +A   F G+    + + NAM+ GL   G G +A+GLF  M  
Sbjct: 327 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 386

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
                D  +  GV  AC       +G Q  + +    G    +     ++DL G+   L 
Sbjct: 387 SSIRFDVVSLSGVFSACAETKGYFQG-QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALM 445

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           EA  + Q M  + +++ W  ++ A  ++   +      + ++R  G  P ++T
Sbjct: 446 EAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF-GMKPDDFT 496



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 35/235 (14%)

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG--LLGLGMKVHASINKYRFKCNT 346
           + +A+ A    +Q +   + P   T   +  +CA++G   L  G   HA +    F    
Sbjct: 35  RALAEHARMPAEQQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTA 94

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD- 405
            V N L+ MYA+C     A  VF+ M ++D VSWN ML   +  G    A+ LF  M D 
Sbjct: 95  FVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDP 154

Query: 406 ------------------------------EGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
                                          G  PD+ TF  +L +C+    +  GVQ  
Sbjct: 155 DVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ-V 213

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           +++    G+   V     ++D+ G+   L +AL     MP E N + WG  +  C
Sbjct: 214 HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 267


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 184/475 (38%), Positives = 274/475 (57%), Gaps = 13/475 (2%)

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
           +N F + Q +HA +   G   D+ V N L+  Y       +  A  LF  M ERD VSW+
Sbjct: 14  RNIFQIKQ-VHAQVTTTGIIHDLIVANKLL--YMCAKHKDLVTAHLLFNKMEERDPVSWS 70

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
            MI G VK G+     + F E+    +   N  L    KA    +   +  ++ H  ++ 
Sbjct: 71  VMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGL-IMGRLIHSTVLK 129

Query: 248 ---------WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
                     ST+V  Y+K G ++ AK LFDRMP K LV  T++I+GYAE G   E+  L
Sbjct: 130 NGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVL 189

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +DQM   G  PD   +++I+ ACA+ G +     VH  +   R+  +  +  A++DMYAK
Sbjct: 190 FDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAK 249

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           CGS+D++  +F+ M +K+++SW+AM+     HGQG +AL LF  M + G  P++ TF+ +
Sbjct: 250 CGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISL 309

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L AC+HAG +D G+Q F  M   YG+ P V+HY CM+DLLGR+GRL +ALRL+++M VE 
Sbjct: 310 LYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEK 369

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           +  IW   LGACR H  V+LAE+    L+ L+  +PG+Y +LSNI+A  G W  VA +R 
Sbjct: 370 DEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRN 429

Query: 539 QMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            M K R +K  G + +EVDN ++ F   D  H +S +IY+M+ +L + L+  G+ 
Sbjct: 430 LMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYV 484



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/402 (30%), Positives = 214/402 (53%), Gaps = 15/402 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +  L KC+N+ Q KQ+ AQ+    +  D  +A KL+   A  + +  A  +FN +++ D 
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDP 66

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ +I   V+N    + F+ F ++   G   DNF+ PF++KAC       + ++IH+ 
Sbjct: 67  VSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHST 126

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G   D FV ++L+D Y+KCG+  +  AK+LF  M ++D+V+   MIAG  + G+ +
Sbjct: 127 VLKNGLHLDNFVCSTLVDMYAKCGM--IDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPN 184

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMV 252
           E+  LFD+M       D V+  TI++  AK G MN A  + + +  R    ++   + M+
Sbjct: 185 ESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMI 244

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G ++ ++ +FDRM  K ++ W+ +I  Y   G  +EA  L+  M  +G+ P+  
Sbjct: 245 DMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRI 304

Query: 313 TLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T IS+L AC+ +GL+  G+++ + ++  Y  + +      +VD+  + G LD A+ +   
Sbjct: 305 TFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIEN 364

Query: 372 M-TKKDLVSWNAMLYGLAMHGQ---GEKALGLFSRMKDEGFG 409
           M  +KD   W A L    +H Q    EKA  L   ++ +  G
Sbjct: 365 MEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPG 406


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 222/704 (31%), Positives = 340/704 (48%), Gaps = 116/704 (16%)

Query: 4   PIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR 63
           P+R     +   LLE  +Q+    K+L + K++    +K     D  +  KL      C 
Sbjct: 2   PLRXEVKNNYLHLLEACIQS----KSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCN 57

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           Q+ LA ++F++I +P V L+N +IRA   N     A  ++  M   GV  + +TYPF+LK
Sbjct: 58  QVVLARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLK 117

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC+G         IH+     G   D+FV  +L+D Y+KCG+  +  A++LF SM  RD+
Sbjct: 118 ACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI--LVEAQRLFSSMSHRDV 175

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER------------------------------- 212
           V+WN+MIAG    G   +A +L  +M E                                
Sbjct: 176 VAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGY 235

Query: 213 --------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
                     V    +LD YAK   +  A ++F+ +  RN VSWS M+ GY     M+ A
Sbjct: 236 CVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEA 295

Query: 265 KLLFDRMPAKTLV---PWTI-------------------------------------IIS 284
             LFD+M  K  +   P T+                                     ++S
Sbjct: 296 LELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLS 355

Query: 285 GYAEKGMAKEAARLYD-------------------------------QMEEAGLKPDDGT 313
            YA+ G+  +A R +D                                M+ +G+ PD  T
Sbjct: 356 MYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTT 415

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           ++ +L AC+    L  G   H  +    F  +T +CNAL+DMY+KCG +  A  VFN M 
Sbjct: 416 MLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD 475

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           + D+VSWNAM+ G  +HG G +ALGLF  +   G  PD  TF+ +L +C+H+G + +G  
Sbjct: 476 RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRL 535

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           +F +M RD+ I+P++EH  CM+D+LGR+G + EA   +++MP EP+  IW  LL ACR H
Sbjct: 536 WFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIH 595

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +EL EEV   +  L     GN+ +LSNI++A G W+  A++R+  K    +K  G S 
Sbjct: 596 KNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSW 655

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +E++  VH F   DQ H +  QI + +  L  ++K +G+ A+ S
Sbjct: 656 IEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECS 699


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 307/571 (53%), Gaps = 10/571 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           LN  +QL A  IK     D  +   ++   A    +  A + F  + +  V   N ++  
Sbjct: 266 LNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVG 325

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            V+  L  +A  +F  M    +  D  +   +  AC     +   Q +H L  K G+  D
Sbjct: 326 LVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGFDVD 385

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V N+++D Y KC    +  A  +F  M ++D VSWN++IA L + G   +    F+EM
Sbjct: 386 ICVNNAVLDLYGKCK--ALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443

Query: 210 ----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
                + D  ++ ++L   A    +     + +K+    + S     ST+V  Y K G +
Sbjct: 444 LRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGII 503

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ L DR+  + +V W  I+SG++    ++EA + + +M + GLKPD  T  ++L  C
Sbjct: 504 DEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTC 563

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    + LG ++H  I K     +  + + LVDMYAKCG + +++ VF  + K+D VSWN
Sbjct: 564 ANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWN 623

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+ G A+HG G +AL +F RM+ E   P+  TFV VL AC+H G  D G +YF+ M   
Sbjct: 624 AMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTH 683

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y + PQ+EH+ CM+D+LGRS   +EA++ + SMP + +A+IW TLL  C+    VE+AE 
Sbjct: 684 YKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAEL 743

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               ++ L   D   Y +LSN++A +G W  V+  R  +K+ R +K  G S +EV +E+H
Sbjct: 744 AASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQSEMH 803

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F V D+ HP+S ++Y+M+N L  ++K  G+
Sbjct: 804 GFLVGDKAHPRSGELYEMLNDLIGEMKLSGY 834



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 124/482 (25%), Positives = 221/482 (45%), Gaps = 15/482 (3%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      ++++ +    +  A+ +F+ + DPDV  +N L+    Q  +  ++  +F++
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  +GV  D  T+  LLK+C+      L   +HAL  K G   D+   ++L+D Y KC  
Sbjct: 140 MARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRS 199

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD-AVSWNTILDGY 224
           +  +L    F  M ER+ VSW + IAG V+  +      LF EM      VS  +    +
Sbjct: 200 LDDALC--FFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAF 257

Query: 225 AKAGEMNL--------AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                M+         A  +  K     +V  + +V  Y+K   +  A+  F  +P  T+
Sbjct: 258 RSCAAMSCLNTGRQLHAHAIKNKFSSDRVVG-TAIVDVYAKANSLTDARRAFFGLPNHTV 316

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
                ++ G    G+  EA  L+  M  + ++ D  +L  + +ACAE+     G +VH  
Sbjct: 317 ETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCL 376

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             K  F  +  V NA++D+Y KC +L  A  +F GM +KD VSWNA++  L  +G  +  
Sbjct: 377 AIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 436

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           +  F+ M   G  PD +T+  VL AC     ++ G+     + +  G+         ++D
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS-GLGSDAFVASTVVD 495

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  + G + EA +L   +  +   + W  +L     +   E A++    ++ + G  P +
Sbjct: 496 MYCKCGIIDEAQKLHDRIGGQ-QVVSWNAILSGFSLNKESEEAQKFFSEMLDM-GLKPDH 553

Query: 517 YT 518
           +T
Sbjct: 554 FT 555



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 177/369 (47%), Gaps = 12/369 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + K   Q +Q+    IK     D  +   ++     C+ +  A  +F  ++  D   +N 
Sbjct: 363 ETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNA 422

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I A  QN         F +M   G+  D+FTY  +LKAC          M+H  + K G
Sbjct: 423 IIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSG 482

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D FV ++++D Y KCG+  +  A+KL   +G + +VSWN++++G     E  EA++ 
Sbjct: 483 LGSDAFVASTVVDMYCKCGI--IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKF 540

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           F EM +     D  ++ T+LD  A    + L  ++  +I  + ++      ST+V  Y+K
Sbjct: 541 FSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAK 600

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GDM  + L+F+++  +  V W  +I GYA  G+  EA R++++M++  + P+  T +++
Sbjct: 601 CGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAV 660

Query: 318 LAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KK 375
           L AC+  GL   G +  H     Y+ +        +VD+  +      A+   N M  + 
Sbjct: 661 LRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQA 720

Query: 376 DLVSWNAML 384
           D V W  +L
Sbjct: 721 DAVIWKTLL 729



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 157/324 (48%), Gaps = 18/324 (5%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           +A   N +L  YA+      A  +F+ +P R+ VSW+TM+  YS  GD+  A  LFD MP
Sbjct: 51  NAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMP 110

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
              +V W  ++SGY ++GM +E+  L+ +M   G+ PD  T   +L +C+    L LG++
Sbjct: 111 DPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ 170

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           VHA   K   + +    +ALVDMY KC SLD+A+  F GM +++ VSW A + G   + Q
Sbjct: 171 VHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQ 230

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-------YSMERDYGIL 445
             + L LF  M+  G G  + ++     +C     ++ G Q         +S +R  G  
Sbjct: 231 YVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT- 289

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
                   ++D+  ++  L +A R    +P          ++G  R    +E A  +   
Sbjct: 290 -------AIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIE-AMGLFQF 341

Query: 506 LIRLKGSDPGNYTMLSNIFAATGD 529
           +IR   S   +   LS +F+A  +
Sbjct: 342 MIR--SSIRFDVVSLSGVFSACAE 363



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 179/413 (43%), Gaps = 44/413 (10%)

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  + FV N L+  Y++    G + A+++F +M  RD VSWN+M+      G++S A  
Sbjct: 47  GFVPNAFVSNCLLQMYAR--CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVA 104

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--------------------- 243
           LFD MP+ D VSWN ++ GY + G    + +LF ++  R                     
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164

Query: 244 ------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
                             ++ + S +V  Y K   ++ A   F  MP +  V W   I+G
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAG 224

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
             +         L+ +M+  GL     +  S   +CA    L  G ++HA   K +F  +
Sbjct: 225 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 284

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V  A+VD+YAK  SL +A   F G+    + + NAM+ GL   G G +A+GLF  M  
Sbjct: 285 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQFMIR 344

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
                D  +  GV  AC       +G Q  + +    G    +     ++DL G+   L 
Sbjct: 345 SSIRFDVVSLSGVFSACAETKGYFQG-QQVHCLAIKSGFDVDICVNNAVLDLYGKCKALM 403

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           EA  + Q M  + +++ W  ++ A  ++   +      + ++R  G  P ++T
Sbjct: 404 EAYLIFQGMK-QKDSVSWNAIIAALEQNGHYDDTILHFNEMLRF-GMKPDDFT 454



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 91/224 (40%), Gaps = 35/224 (15%)

Query: 300 DQMEEAGLKPDDGTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           +Q +   + P   T   +  +CA++G   L  G   HA +    F  N  V N L+ MYA
Sbjct: 4   EQQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYA 63

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD------------ 405
           +C     A  VF+ M ++D VSWN ML   +  G    A+ LF  M D            
Sbjct: 64  RCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSG 123

Query: 406 -------------------EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
                               G  PD+ TF  +L +C+    +  GVQ  +++    G+  
Sbjct: 124 YCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ-VHALAVKTGLEI 182

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
            V     ++D+ G+   L +AL     MP E N + WG  +  C
Sbjct: 183 DVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGAAIAGC 225


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 204/602 (33%), Positives = 320/602 (53%), Gaps = 25/602 (4%)

Query: 9   TWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA 68
           T FSK   L   L+      +L + K L A  ++   + D ++   L+   + C  +  A
Sbjct: 47  TKFSKF-TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDA 105

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
           +KVF  I++PDV  ++ +I    Q     +A  +F  M+ KG   + FT   L+      
Sbjct: 106 LKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNM 165

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY--SKCGVVGVSLAKKLFMSMGERDIVSW 186
                 Q IH  I K G+  D  V N LI  Y  S+C    V    K+F +M   D+VSW
Sbjct: 166 GDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRC----VEDGNKVFEAMTNPDLVSW 221

Query: 187 NSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           N++++G           R+F +M     + +  ++ ++L   +     +L    F K  H
Sbjct: 222 NALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCS-----SLLDPEFGKQVH 276

Query: 243 RNIVSWST---------MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            +I+  S+         +V  Y+K   +E A + FDR+  + +  WT+IISGYA+   A+
Sbjct: 277 AHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAE 336

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           +A + + QM+  G+KP++ TL S L+ C+    L  G ++HA   K     +  V +ALV
Sbjct: 337 KAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALV 396

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           D+Y KCG +++A ++F G+  +D+VSWN ++ G + HGQGEKAL  F  M  EG  PD+ 
Sbjct: 397 DLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEA 456

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           TF+GVL AC+  G +++G + F SM + YGI P +EHY CM+D+LGR+G+  E    ++ 
Sbjct: 457 TFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEE 516

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           M + P ++IW T+LGAC+ H  V+  E+    L  ++     +Y +LSNIFA+ G W+ V
Sbjct: 517 MNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDV 576

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            N+R  M     +K  G S VEVD +VH F   D  HPK  +IY  ++ LG+ L  +G+ 
Sbjct: 577 RNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYV 636

Query: 594 AK 595
            K
Sbjct: 637 PK 638



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 136/520 (26%), Positives = 232/520 (44%), Gaps = 61/520 (11%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           M LA ++F  + + +   +N L+    Q     +  ++F  M+E       FT   +LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C         +++HAL  + G   D F+  SL+D YSKCG V  +L  K+F  +   D+V
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDAL--KVFTKIRNPDVV 118

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDA----VSWNTILDGYAKAGEMNLAFELFEKI 240
           +W++MI GL + G   EA  LF  M  + A     + ++++      G++     +   I
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 241 -----PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                   N+VS + ++  Y K   +E    +F+ M    LV W  ++SG+ +       
Sbjct: 179 CKYGFESDNLVS-NPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRG 237

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
            R++ QM   G KP+  T IS+L +C+       G +VHA I K     +  V  ALVDM
Sbjct: 238 PRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDM 297

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAK   L++A   F+ +  +D+ SW  ++ G A   Q EKA+  F +M+ EG  P++YT 
Sbjct: 298 YAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTL 357

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG------CMIDLLGRSGRLK---- 465
              L  C+H   ++ G Q        + +  +  H+G       ++DL G+ G ++    
Sbjct: 358 ASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 466 ------------------------------EALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
                                         EA R++ S  + P+   +  +L AC     
Sbjct: 411 IFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGL 470

Query: 496 VELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATGDWNKV 533
           VE  ++  D + ++ G +P   +Y  + +I    G +N+V
Sbjct: 471 VEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEV 510


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 197/577 (34%), Positives = 295/577 (51%), Gaps = 71/577 (12%)

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           L   +++ C +N LN +A     ++  +G+  D+ T   LL+ C         + +H  +
Sbjct: 27  LVEAIVKLCKKNKLN-EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHL 85

Query: 142 YKCGY-FGDIFVPNSLIDSYSKCG-----------------------------VVGVSLA 171
              G      F+ N LI+ Y+KCG                             +  +  A
Sbjct: 86  KLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPA 145

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE-------------------- 211
           +KLF  M E+D+VSWN+M+    + G   EA R + E  +                    
Sbjct: 146 RKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKL 205

Query: 212 -------------------RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
                               + V  +++LD Y K G M  A +LF+++  R++++W+TMV
Sbjct: 206 KEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMV 265

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            GY+K GDM+ A  LF  MP K  V WT +ISGYA  GM  +A  L+ +M    ++PD  
Sbjct: 266 SGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQF 325

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T  S L ACA    L  G ++HA + +  F+ NT V +AL+DMY+KCGSL     VF+ M
Sbjct: 326 TFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLM 385

Query: 373 TKK-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
             K D+V WN ++  LA HG GE+A+ +   M   G  PDK TFV +L AC+H+G + +G
Sbjct: 386 GNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQG 445

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           + +F SM  DYGI+P  EHY C+IDLLGR+G  +E +  ++ MP +P+  +W  LLG CR
Sbjct: 446 LNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCR 505

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  +EL  +  + LI L+      Y +LS+I+A  G W  V  VR  M + + +K    
Sbjct: 506 IHGHIELGRKAAERLIELEPQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAI 565

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           S +E++N+VH FSV D  HP  EQIY ++  L   ++
Sbjct: 566 SWLEIENKVHSFSVSDSSHPLKEQIYSVLEQLAGQME 602


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 187/511 (36%), Positives = 289/511 (56%), Gaps = 8/511 (1%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N L+           AF V+  + + G   D FT+P +LK+C         + +H +I 
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+  +I+V NSL+  YS C   G   A ++F  M  RD+VSW  +I+G V+ G   EA
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGD--ASRVFDEMLVRDVVSWTGVISGYVRAGLFDEA 119

Query: 203 RRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSK 257
             LF  M  E +A ++ ++L    + G +++   +    F+      +   + ++  Y K
Sbjct: 120 VGLFLRMDVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVK 179

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +  AK +FD +  K +V WT IISG  +    KEA  L+  M+ +G++PD   L S+
Sbjct: 180 CGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSV 239

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L+ACA  G L  G  VH  I++   K +  +  A+VDMYAKCG ++ +M +FNGM  K++
Sbjct: 240 LSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNV 299

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++WNA+L GLAMHG   K L LF  M   G  P++ TF+ +L AC H G +++G QYF  
Sbjct: 300 LTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNW 359

Query: 438 ME-RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           M+ + Y + P++EHYGCM+DLL R+  L EAL L ++MP+ P+  I G LL AC+++   
Sbjct: 360 MKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNT 419

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           EL +E+LD  + L   D G Y +LSNI A    W+ V  +R  MK+   +KP G++ +E+
Sbjct: 420 ELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGSTVIEL 479

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           D + HEF V D  HP+ ++I  ++  L   +
Sbjct: 480 DGKAHEFIVGDTRHPQDKRIRLLLKILSDQI 510



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 194/394 (49%), Gaps = 18/394 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++  K   + + +Q+   IIK+    + Y+   L+   ++C++ G A +VF+++   DV
Sbjct: 41  LKSCAKFVGIGEGRQVHGVIIKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDV 100

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I   V+  L  +A  +FL M    V  +  T+  +L AC  K +  + + IH L
Sbjct: 101 VSWTGVISGYVRAGLFDEAVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGL 157

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
            +K  +   + V N+L+D Y KCG   +  AK++F  + E+DIVSW S+I+GLV+     
Sbjct: 158 SFKSAFGVGLEVSNALMDMYVKCGC--LPGAKQVFDELAEKDIVSWTSIISGLVQCNCPK 215

Query: 201 EARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW-----STM 251
           EA  LF +M     E D +   ++L   A+ G ++    + E I  R  + W     + M
Sbjct: 216 EALELFQDMQSSGIEPDGIILTSVLSACARLGALDYGRWVHEHI-DRKAIKWDIQIGTAM 274

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y+K G +EM+  +F+ MP K ++ W  +++G A  G A +   L+++M   G++P++
Sbjct: 275 VDMYAKCGCIEMSMQIFNGMPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNE 334

Query: 312 GTLISILAACAESGLLGLGMKVHASI--NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
            T ++IL AC   GL+  G +    +   +Y           +VD+  +   LD A+ + 
Sbjct: 335 VTFLAILTACCHCGLVNEGRQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELT 394

Query: 370 NGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
             M    D+    A+L     +G  E    +  R
Sbjct: 395 KAMPMSPDVRIMGALLSACKENGNTELPQEILDR 428



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 123/256 (48%), Gaps = 42/256 (16%)

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
           P+  ++SGYA     K A  +Y ++ + G  PD  T  ++L +CA+   +G G +VH  I
Sbjct: 1   PFNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVI 60

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  F CN  V N+LV  Y+ C    +A  VF+ M  +D+VSW  ++ G    G  ++A+
Sbjct: 61  IKMGFVCNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGF--IDKGVQYFYSMERDYGILPQVEHYGCMI 455
           GLF RM  E   P+  TFV VL AC   G+  + KG+    S +  +G+  +V +   ++
Sbjct: 121 GLFLRMDVE---PNAATFVSVLVACGRKGYLSVGKGIHGL-SFKSAFGVGLEVSN--ALM 174

Query: 456 DLLGRSGRL-------------------------------KEALRLVQSMP---VEPNAI 481
           D+  + G L                               KEAL L Q M    +EP+ I
Sbjct: 175 DMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGI 234

Query: 482 IWGTLLGACRKHNAVE 497
           I  ++L AC +  A++
Sbjct: 235 ILTSVLSACARLGALD 250


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 285/461 (61%), Gaps = 12/461 (2%)

Query: 150 IFVPNSLIDSYSKCGVVG--VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           +F+ N LI +YS  G      SL  ++ +     +  S+  + +         + R L  
Sbjct: 47  VFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHT 106

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
              +     D  +   ++D YAK G ++LA + F+++  R++ +W++M+ GY++ GD+E 
Sbjct: 107 HFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEG 166

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE-AGLKPDDGTLISILAACA 322
           A  LF  MPA+ +  WT +ISGYA+ G   +A  ++  MEE   ++P++ TL S+L ACA
Sbjct: 167 ALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACA 226

Query: 323 ESGLLGLG--MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVS 379
             G L +G  ++V+A  N Y FK N  V NAL++MYA+CG +D A  VF  +  +++L S
Sbjct: 227 NLGALEVGERIEVYARGNGY-FK-NLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCS 284

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+M+ GLA+HG+ ++A+ LF +M  EG  PD  TFVGVL ACTH G + +G  +F SME
Sbjct: 285 WNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESME 344

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           RD+ I P++EHYGCM+DLLGR+G L+EA  L+  MP+EP++++WGTLLGAC  H  VELA
Sbjct: 345 RDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELA 404

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E+    L  L+ S+PGNY +LSNI+A  G W+ VA +R  MK  +  K +G S +E    
Sbjct: 405 EKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGH 464

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           +H+F V D+ H +S++IY +++ +   +K  G+     +EI
Sbjct: 465 IHKFIVEDRSHSRSDEIYALLDEVSMKMKLHGNVNDSDSEI 505



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 186/415 (44%), Gaps = 52/415 (12%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +N+ KQ+ A  ++  ++       +LI SL     +  A K+F+ I  P V LYN LI+A
Sbjct: 1   MNRLKQIQAYTLRNGIEH----TKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQA 56

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              +  + Q F ++  M  +G   +  ++ FL  AC   +     +M+H    K G+  D
Sbjct: 57  YSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCD 116

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +F   +L+D Y+K G++  SLA+K F  M  RD+ +WNSMIAG  + G+L  A  LF  M
Sbjct: 117 VFALTALVDMYAKLGLL--SLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLM 174

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELF-------------------------------- 237
           P R+  SW  ++ GYA+ G+   A  +F                                
Sbjct: 175 PARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVG 234

Query: 238 EKIP--------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA-KTLVPWTIIISGYAE 288
           E+I          +N+   + ++  Y++ G ++ A  +F+ +   + L  W  +I G A 
Sbjct: 235 ERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAV 294

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTN 347
            G   EA  L+ +M   G  PDD T + +L AC   G++  G     S+ + +       
Sbjct: 295 HGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLE 354

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ---GEKALG 398
               +VD+  + G L  A  +   M  + D V W  +L   + HG     EKA G
Sbjct: 355 HYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAG 409



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 138/300 (46%), Gaps = 11/300 (3%)

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYAE 288
           A +LF+ IP   +  ++ ++  YS  G       L+ +M  +   P    +T + S  A 
Sbjct: 35  AHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACAS 94

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
               ++   L+    ++G   D   L +++   A+ GLL L  K    +       +   
Sbjct: 95  LSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVR----DVPT 150

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG- 407
            N+++  YA+CG L+ A+ +F  M  +++ SW AM+ G A +GQ  KAL +F  M++E  
Sbjct: 151 WNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETE 210

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             P++ T   VL AC + G ++ G +      R  G    +     ++++  R GR+ +A
Sbjct: 211 MRPNEVTLASVLPACANLGALEVG-ERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKA 269

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             + + +    N   W +++     H   + A E+   ++R +G+ P + T +  + A T
Sbjct: 270 WGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLR-EGAAPDDVTFVGVLLACT 328



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 50/304 (16%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      +I+  A C  +  A+++F  +   +V  +  +I    QN   A+A  +FL M
Sbjct: 146 RDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMM 205

Query: 107 QEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           +E+     N  T   +L AC       + + I       GYF +++V N+L++ Y++CG 
Sbjct: 206 EEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGR 265

Query: 166 VGVSLAKKLFMSM-GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV--------- 215
             +  A  +F  + G R++ SWNSMI GL   G   EA  LF +M    A          
Sbjct: 266 --IDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323

Query: 216 -------------------------------SWNTILDGYAKAGEMNLAFELFEKIPHR- 243
                                           +  ++D   +AGE+  A +L  ++P   
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEP 383

Query: 244 NIVSWSTMVWGYSKDGDMEMAK----LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           + V W T++   S  G +E+A+     LF+  P+     + I+ + YA  G     ARL 
Sbjct: 384 DSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNP-GNYVILSNIYATAGRWDGVARLR 442

Query: 300 DQME 303
             M+
Sbjct: 443 KLMK 446



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 41/221 (18%), Positives = 92/221 (41%), Gaps = 7/221 (3%)

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I  Y  +        L+    +  S+  A  +F+ + K  +  +N ++   + HG   + 
Sbjct: 7   IQAYTLRNGIEHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHGPHHQC 66

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
             L+++M  +G  P++++F  +  AC       +G +  ++     G    V     ++D
Sbjct: 67  FSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQG-RMLHTHFVKSGFGCDVFALTALVD 125

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-KGSDPG 515
           +  + G L  A +    M V  +   W +++    +   +E A E    L RL    +  
Sbjct: 126 MYAKLGLLSLARKQFDEMTVR-DVPTWNSMIAGYARCGDLEGALE----LFRLMPARNVT 180

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ++T + + +A  G + K  ++ L M++    +P+  +   V
Sbjct: 181 SWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASV 221


>gi|195651407|gb|ACG45171.1| CRR4 [Zea mays]
          Length = 601

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 193/574 (33%), Positives = 306/574 (53%), Gaps = 45/574 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-- 125
           A  +F+ +  P   L    +    + SL+ +       +  +G    +   P +LK+C  
Sbjct: 31  ARHLFDAVPRPTAALCCAFVSVLSKLSLHQELIEAVSSLHRRGGAIPSGCIPLVLKSCAL 90

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           +  +        HAL+   G  GD+FV  +L+D Y+K G   +  A   F  M  +D + 
Sbjct: 91  SAASCQGTQTHCHALVR--GMLGDVFVQTALVDFYAKNG--NMDSAVMAFEEMPIKDPIP 146

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-- 243
            N +I G  + G++ EARRLFD MP + + SWN+++  YA  GE   A  LF+++     
Sbjct: 147 MNCLIIGYSRSGDVEEARRLFDSMPRKTSASWNSMIACYAHGGEFQEALTLFDQMLREGA 206

Query: 244 --NIVSWSTMVWGYSKDGDMEM----------------------------------AKLL 267
             N ++ +T+    +K GD+E                                   A+  
Sbjct: 207 SPNAITITTVFSICAKTGDLETGRRAKAWVSEEDLQNVIVHTALMEMYVKCRAIDEARRE 266

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FDRMP + +V W+ +I+GY+  G   E+  L+++M+    KP++ TL+ +L+ACA+ G  
Sbjct: 267 FDRMPRRDVVAWSTMIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSD 326

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++ + I        + + +AL+DMY KCG +  A  VF+ M +K +++WN+M+ GL
Sbjct: 327 ELGEQIGSYIESQTLPLTSYLGSALIDMYTKCGHVARARDVFHRMEQKVVIAWNSMIRGL 386

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-YGILP 446
           A++G  E A+ L+  M  +G  P++ TF+ +L ACTHAG +DKG+ +F  M+++     P
Sbjct: 387 ALNGFAEDAIALYGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASP 446

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           QVEH  C++DLL +SGRL EA + +  M VEPNA+IW TLL ACR H  VELA+     L
Sbjct: 447 QVEHCACIVDLLCKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAGKL 506

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           + L+ +    Y +LSNI+A  G W  V  +R  M+    QK S  S +E+D EVH F V 
Sbjct: 507 VVLEPNSSSIYVLLSNIYADAGLWGDVREIRDLMRSKNLQKLSAYSWIELDGEVHRFLVQ 566

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           D  HP+S +IY +++ LG  L+      +L +E+
Sbjct: 567 DTYHPRSAEIYNVVDGLGLQLERTSPDHELISEV 600



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 142/318 (44%), Gaps = 23/318 (7%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L   ++  A + + DLQ +  +   L+     CR +  A + F+ +   DV  ++T
Sbjct: 222 KTGDLETGRRAKAWVSEEDLQ-NVIVHTALMEMYVKCRAIDEARREFDRMPRRDVVAWST 280

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I     N    ++  +F  M+      +  T   +L AC       L + I + I    
Sbjct: 281 MIAGYSHNGRPHESLELFERMKATNCKPNEVTLVGVLSACAQLGSDELGEQIGSYIESQT 340

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y+KCG   V+ A+ +F  M ++ +++WNSMI GL   G   +A  L
Sbjct: 341 LPLTSYLGSALIDMYTKCG--HVARARDVFHRMEQKVVIAWNSMIRGLALNGFAEDAIAL 398

Query: 206 FDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR------NIVSWSTMVWGY 255
           + EM     + + +++  +L     AG ++     F+++          +   + +V   
Sbjct: 399 YGEMVGDGVQPNEITFLALLTACTHAGLVDKGMAFFQEMKKNKQHASPQVEHCACIVDLL 458

Query: 256 SKDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDD 311
            K G + E  K + D       V WT ++S    +A+  +AK AA      +   L+P+ 
Sbjct: 459 CKSGRLWEAYKFICDMEVEPNAVIWTTLLSACRAHADVELAKLAAG-----KLVVLEPNS 513

Query: 312 GTLISILAAC-AESGLLG 328
            ++  +L+   A++GL G
Sbjct: 514 SSIYVLLSNIYADAGLWG 531


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 293/566 (51%), Gaps = 74/566 (13%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-----MGLAIKVFNDIQDPDVHLYN 84
           + Q KQ+ AQ+IK  +  +P +A K    L LC       +  A +VFN I  P+  ++N
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKF---LTLCTSPHVGDLLYAQRVFNGITSPNTFMWN 57

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
            +IRA   +     AF  +  M    V  +++T+PFLL+AC           +H L+ K 
Sbjct: 58  AIIRAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKL 117

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  D+F  N+L+  Y+ CG                                 E+  AR+
Sbjct: 118 GFGSDVFALNALLHVYALCG---------------------------------EIHCARQ 144

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           LFD +PERDAVSWN ++DGY K+G++  A+ +F  +P +N+VSW+++             
Sbjct: 145 LFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSL------------- 191

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
                             ISG  E G + EA  L  +M+ AG + D   + S+L ACA  
Sbjct: 192 ------------------ISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANL 233

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM--TKKDLVSWNA 382
           G L  G  +H  +       +  +  ALV+MY KCG ++ A+SVF  +   +KD+  W A
Sbjct: 234 GALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTA 293

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A+HG+G +AL  F+RM+ EG  P+  TF  VL AC++ G +++G + F SM+  Y
Sbjct: 294 MIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFY 353

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            + P +EHYGCM+DLLGRSGRL EA  L++ MP++P+A+IWG LL AC  H    L  +V
Sbjct: 354 NVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQV 413

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ +     G Y  L+ I AA G W + A VRL+MK        G SSV ++  VHE
Sbjct: 414 GAHLVEVDSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHE 473

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLK 588
           F    Q HP+ EQI   +  + + L+
Sbjct: 474 FLAGHQDHPQMEQIQLKLKQIAERLR 499



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 123/304 (40%), Gaps = 44/304 (14%)

Query: 24  LHKCKNL---NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C+NL    +  Q+   +IKL    D +    L+   ALC ++  A ++F++I + D 
Sbjct: 95  LRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFDNIPERDA 154

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDM-------------------------------QEK 109
             +N +I   +++     A+ VFLDM                               Q  
Sbjct: 155 VSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNA 214

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           G   D      LL AC         + +H  +   G   D  +  +L++ Y KCG +  +
Sbjct: 215 GFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEA 274

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYA 225
           L+    +   ++D+  W +MI G    G   EA   F+ M       +++++  +L   +
Sbjct: 275 LSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFTAVLRACS 334

Query: 226 KAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPW 279
             G +    ELF+ +      + +I  +  MV    + G ++ AK L  +MP K + V W
Sbjct: 335 YGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIW 394

Query: 280 TIII 283
             ++
Sbjct: 395 GALL 398


>gi|15226879|ref|NP_181048.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099187|sp|O64766.1|PP185_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g35030, mitochondrial; Flags: Precursor
 gi|3033399|gb|AAC12843.1| hypothetical protein [Arabidopsis thaliana]
 gi|209414526|gb|ACI46503.1| At2g35030 [Arabidopsis thaliana]
 gi|330253957|gb|AEC09051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 627

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 184/566 (32%), Positives = 320/566 (56%), Gaps = 47/566 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  ++ + ++LF ++   D +++      ++S     +Q+ +A  +F ++ + +V  +NT
Sbjct: 89  KLGDMREARELFDRV---DSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNT 145

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    Q+    +A  +F +M E+ + + N                    M+ AL+ +  
Sbjct: 146 MIDGYAQSGRIDKALELFDEMPERNIVSWN-------------------SMVKALVQR-- 184

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                      ID            A  LF  M  RD+VSW +M+ GL K G++ EARRL
Sbjct: 185 ---------GRIDE-----------AMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRL 224

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FD MPER+ +SWN ++ GYA+   ++ A +LF+ +P R+  SW+TM+ G+ ++ +M  A 
Sbjct: 225 FDCMPERNIISWNAMITGYAQNNRIDEADQLFQVMPERDFASWNTMITGFIRNREMNKAC 284

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAES 324
            LFDRMP K ++ WT +I+GY E    +EA  ++ +M  +  +KP+ GT +SIL+AC++ 
Sbjct: 285 GLFDRMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDL 344

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF-NGMT-KKDLVSWNA 382
             L  G ++H  I+K   + N  V +AL++MY+K G L  A  +F NG+  ++DL+SWN+
Sbjct: 345 AGLVEGQQIHQLISKSVHQKNEIVTSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNS 404

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A HG G++A+ ++++M+  GF P   T++ +L AC+HAG ++KG+++F  + RD 
Sbjct: 405 MIAVYAHHGHGKEAIEMYNQMRKHGFKPSAVTYLNLLFACSHAGLVEKGMEFFKDLVRDE 464

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            +  + EHY C++DL GR+GRLK+    +       +   +G +L AC  HN V +A+EV
Sbjct: 465 SLPLREEHYTCLVDLCGRAGRLKDVTNFINCDDARLSRSFYGAILSACNVHNEVSIAKEV 524

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
           +  ++     D G Y ++SNI+AA G   + A +R++MK+   +K  G S V+V  + H 
Sbjct: 525 VKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHL 584

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLK 588
           F V D+ HP+ E +  +++ L   ++
Sbjct: 585 FVVGDKSHPQFEALDSILSDLRNKMR 610



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 205/399 (51%), Gaps = 44/399 (11%)

Query: 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD--------------- 207
           C V  ++ A+KLF  + ERD+V+W  +I G +K G++ EAR LFD               
Sbjct: 57  CKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLGDMREARELFDRVDSRKNVVTWTAMV 116

Query: 208 -----------------EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                            EMPER+ VSWNT++DGYA++G ++ A ELF+++P RNIVSW++
Sbjct: 117 SGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYAQSGRIDKALELFDEMPERNIVSWNS 176

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           MV    + G ++ A  LF+RMP + +V WT ++ G A+ G   EA RL+D M E  +   
Sbjct: 177 MVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERNII-- 234

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             +  +++   A++  +    ++   + +  F       N ++  + +   ++ A  +F+
Sbjct: 235 --SWNAMITGYAQNNRIDEADQLFQVMPERDFAS----WNTMITGFIRNREMNKACGLFD 288

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFID 429
            M +K+++SW  M+ G   + + E+AL +FS+M +D    P+  T+V +L AC+    + 
Sbjct: 289 RMPEKNVISWTTMITGYVENKENEEALNVFSKMLRDGSVKPNVGTYVSILSACSDLAGLV 348

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS-MPVEPNAIIWGTLLG 488
           +G Q    + +      ++     ++++  +SG L  A ++  + +  + + I W +++ 
Sbjct: 349 EGQQIHQLISKSVHQKNEIV-TSALLNMYSKSGELIAARKMFDNGLVCQRDLISWNSMIA 407

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
               H   + A E+ + + R  G  P   T L+ +FA +
Sbjct: 408 VYAHHGHGKEAIEMYNQM-RKHGFKPSAVTYLNLLFACS 445



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 171/363 (47%), Gaps = 53/363 (14%)

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           +L + ++ S     +     +I  L K G+++EAR+LFD +PERD V+W  ++ GY K G
Sbjct: 32  NLVRSIYSSSSRPRVPQPEWLIGELCKVGKIAEARKLFDGLPERDVVTWTHVITGYIKLG 91

Query: 229 EMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           +M  A ELF+++  R N+V+W+ MV GY +   + +A++LF  MP + +V W  +I GYA
Sbjct: 92  DMREARELFDRVDSRKNVVTWTAMVSGYLRSKQLSIAEMLFQEMPERNVVSWNTMIDGYA 151

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           + G   +A  L+D+M E                                        N  
Sbjct: 152 QSGRIDKALELFDEMPER---------------------------------------NIV 172

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
             N++V    + G +D AM++F  M ++D+VSW AM+ GLA +G+ ++A  LF  M +  
Sbjct: 173 SWNSMVKALVQRGRIDEAMNLFERMPRRDVVSWTAMVDGLAKNGKVDEARRLFDCMPERN 232

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKE 466
                 ++  ++        ID+  Q F  M ERD+        +  MI    R+  + +
Sbjct: 233 I----ISWNAMITGYAQNNRIDEADQLFQVMPERDFA------SWNTMITGFIRNREMNK 282

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A  L   MP E N I W T++    ++   E A  V   ++R  GS   N     +I +A
Sbjct: 283 ACGLFDRMP-EKNVISWTTMITGYVENKENEEALNVFSKMLR-DGSVKPNVGTYVSILSA 340

Query: 527 TGD 529
             D
Sbjct: 341 CSD 343


>gi|414587316|tpg|DAA37887.1| TPA: hypothetical protein ZEAMMB73_488455 [Zea mays]
          Length = 622

 Score =  342 bits (878), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 180/535 (33%), Positives = 296/535 (55%), Gaps = 7/535 (1%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLA---IKVFNDIQDPDV 80
           L +C  +    QL A+II L L     +  +  ++        +A   I    D     +
Sbjct: 89  LGRCCTVRCLAQLHARIILLGLHNHHALLARFTTACDALECPSVAASFIAALTDSHAAPL 148

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            L N ++ +  +++    A   F ++  +    D+F++P LL+AC   +     + +HA 
Sbjct: 149 RLRNAVLASLARHAPLHAALTEF-NLLRQAALPDSFSFPCLLRACARVSCLPAGRALHAA 207

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             + G   D+F+  +LI  Y +CGV     A+ LF  +     VSW ++I   V  G + 
Sbjct: 208 AIRLGVHADLFIRTALIQFYGRCGVADA--ARALFYQIDIPSEVSWTAIIVAYVNNGGII 265

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           +AR LFD MP+R+ V WN ++DGY K G++  A  LF+++P R   + ++++ GY+K G+
Sbjct: 266 DARALFDTMPQRNVVHWNVMVDGYVKCGDLEGARRLFDEMPERTATACTSLIGGYAKAGN 325

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ME A+LLFD++  + +  W+ +ISGYA+ G   EA R +D+ +  G+ PD+  ++ +++A
Sbjct: 326 MEAARLLFDKLEDRDVFSWSAMISGYAQNGYPGEALRTFDEFQGQGIHPDELVVVGLMSA 385

Query: 321 CAESGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           C++ G + L   +   I KY    N  +V   LV+M AKCG+L+ A  +F  M  +D+ S
Sbjct: 386 CSQLGNIRLASWIEDYITKYSIDMNNAHVLAGLVNMNAKCGNLERATFLFESMPVRDVFS 445

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           + +++ G  +HG  +KA+ LFSRM  EG  PD   F  VL AC HAG +++G ++F  M+
Sbjct: 446 YCSLMQGYCLHGSADKAVKLFSRMLLEGLTPDNAVFTIVLTACCHAGLVEEGKKFFDIMK 505

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             Y ++P  EHY C+++LLGR G L++A  L+ SMP +P+   WG LLG C+ H  +EL 
Sbjct: 506 NVYLMVPSGEHYACLVNLLGRCGMLEDAYWLIMSMPGKPHPGAWGALLGGCKLHCNIELG 565

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
           +     L  ++  + GNY  LSN++A    W  V+ VR +M   R  K +G + V
Sbjct: 566 KIAAKKLFEIEPDNAGNYVSLSNMYANIDRWGDVSEVRAEMTGKRITKIAGRTLV 620


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 201/616 (32%), Positives = 329/616 (53%), Gaps = 70/616 (11%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFR 101
            + + +I   L++  + C  +  A  +F++I      DV  +N+++ A V++S    A  
Sbjct: 148 FESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 207

Query: 102 VFLDM----QEKGV--FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
           +F  M     EK     +D  +   +L AC         + +H    + G F D+FV N+
Sbjct: 208 LFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNA 267

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--- 212
           LID+Y+KCG++    A K+F  M  +D+VSWN+M+AG  + G    A  LF  M +    
Sbjct: 268 LIDAYAKCGLM--ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 325

Query: 213 -DAVSWNTILDGYAKAGEMNLAFELFEK------IPH----------------------- 242
            D V+W  ++ GY++ G  + A  +F +      +P+                       
Sbjct: 326 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 385

Query: 243 --------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWT 280
                                +++ ++ ++  YSK    + A+ +FD +P   + +V WT
Sbjct: 386 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 445

Query: 281 IIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           ++I G+A+ G + +A +L+ +M  E  G+ P+  T+  IL ACA    + +G ++HA + 
Sbjct: 446 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 505

Query: 339 KYRFKCNTN--VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           ++    ++   V N L++MY+KCG +D A  VF+ M++K  +SW +M+ G  MHG+G +A
Sbjct: 506 RHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 565

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +F +M+  GF PD  TF+ VL AC+H G +D+G+ YF SM  DYG+ P+ EHY   ID
Sbjct: 566 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAID 625

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL R GRL +A + V+ MP+EP A++W  LL ACR H+ VELAE  L+ L+ +   + G+
Sbjct: 626 LLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 685

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           YT++SNI+A  G W  VA +R  MKK+  +K  G S V+       F V D+ HP S QI
Sbjct: 686 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 745

Query: 577 YQMINTLGKDLKPVGH 592
           Y ++ +L   +K +G+
Sbjct: 746 YALLESLIDRIKAMGY 761



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 155/555 (27%), Positives = 254/555 (45%), Gaps = 76/555 (13%)

Query: 45  LQRDPYIAPK-----LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           L  +P+I+P+     +++S   C     A+ V   +       +N LIR  ++      A
Sbjct: 42  LPSEPFISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSA 101

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
             V   M   G   D+FT P +LKAC     +      H LI   G+  ++F+ N+L+  
Sbjct: 102 INVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAM 161

Query: 160 YSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGGELSEARRLFDEMP------ 210
           YS+CG   +  A  +F  + +R   D++SWNS+++  VK      A  LF +M       
Sbjct: 162 YSRCG--SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEK 219

Query: 211 ---ER------------------------------------DAVSWNTILDGYAKAGEMN 231
              ER                                    D    N ++D YAK G M 
Sbjct: 220 PTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLME 279

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT----LVPWTIIISGYA 287
            A ++F  +  +++VSW+ MV GYS+ G+ + A  LF  M  +     +V WT +I+GY+
Sbjct: 280 NAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYS 339

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNT 346
           ++G + EA  ++ QM  +G  P+  T+IS+L+ACA  G    GM++HA S+       + 
Sbjct: 340 QRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDN 399

Query: 347 N---------VCNALVDMYAKCGSLDNAMSVFNG--MTKKDLVSWNAMLYGLAMHGQGEK 395
           +         V NAL+DMY+KC S   A S+F+   + ++++V+W  M+ G A +G    
Sbjct: 400 DFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSND 459

Query: 396 ALGLFSRMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG- 452
           AL LF  M  E +G  P+ YT   +L AC H   I  G Q    + R +           
Sbjct: 460 ALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN 519

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           C+I++  + G +  A  +  SM  + +AI W +++     H     A ++ D  +R  G 
Sbjct: 520 CLINMYSKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGF 577

Query: 513 DPGNYTMLSNIFAAT 527
            P + T L  ++A +
Sbjct: 578 VPDDITFLVVLYACS 592



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 196/453 (43%), Gaps = 68/453 (15%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K + QTK++    I+     D ++   LI + A C  M  A+KVFN ++  DV  +N ++
Sbjct: 241 KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 300

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL-----KACNGKNWFHLVQMIH---- 138
               Q+     AF +F +M+++ +  D  T+  ++     + C+ +      QMI     
Sbjct: 301 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL 360

Query: 139 -------ALIYKCGYFG-----------------------------DIFVPNSLIDSYSK 162
                  +++  C   G                             D+ V N+LID YSK
Sbjct: 361 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 420

Query: 163 CGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------DA 214
           C       A+ +F  + + ER++V+W  MI G  + G+ ++A +LF EM         +A
Sbjct: 421 CR--SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 478

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKI-PHRNIVSWSTMVWG-----YSKDGDMEMAKLLF 268
            + + IL   A    + +  ++   +  H    S +  V       YSK GD++ A+ +F
Sbjct: 479 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 538

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D M  K+ + WT +++GY   G   EA  ++D+M +AG  PDD T + +L AC+  G++ 
Sbjct: 539 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 598

Query: 329 LGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYG 386
            G+    S++  Y            +D+ A+ G LD A      M  +   V W A+L  
Sbjct: 599 QGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 658

Query: 387 LAMHGQ---GEKALGLFSRMKDEGFGPDKYTFV 416
             +H      E AL     M  E  G   YT +
Sbjct: 659 CRVHSNVELAEHALNKLVEMNAENDG--SYTLI 689


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 207/659 (31%), Positives = 337/659 (51%), Gaps = 83/659 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF--NDIQ-DPDV 80
           L +C   + ++Q+ +QII     R  ++A +++S  A    +  A +VF  + I+   ++
Sbjct: 41  LQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNL 100

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            L+N+++RA V +    +A  ++  M++ GV  D FT+P +++AC       L + +H  
Sbjct: 101 LLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVHGH 160

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCG-----------------------VVGVSL------A 171
           + + G+  ++ V N L+  Y K G                       V G +L      A
Sbjct: 161 VVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGA 220

Query: 172 KKLFMSMG----ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--------------- 212
            ++F  MG    E ++V+W S+++   + G+  E   LF  M  R               
Sbjct: 221 SEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSV 280

Query: 213 --DAVSW----------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
             D  ++                      N+++  Y K G +N A  LF +I  +NIVSW
Sbjct: 281 SVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSW 340

Query: 249 STMVWGYSKDGDMEMAKLLF------DRMPA--KTLVPWTIIISGYAEKGMAKEAARLYD 300
           + ++  Y+  G  + A  +F      D  P     +V W+ +I G+A KG  +EA  L+ 
Sbjct: 341 NALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFR 400

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           +M+ A +K +  T+ S+L+ CAE   L LG ++H  + +     N  V N L++MY K G
Sbjct: 401 RMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSG 460

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           S      VF  +  KDL+SWN M+ G  +HG GE A+  F +M  +GF PD  TFV VL 
Sbjct: 461 SFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLS 520

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC+HAG + +G + F  M +++ + PQ+EHY CM+DLLGR+G L+EA ++V+SMPVEPNA
Sbjct: 521 ACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNA 580

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            +WG LL +CR H   E+AEE    +  L     G+Y +LSNI+AA+G W   A VR+  
Sbjct: 581 CVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRISA 640

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
           K    +K  G S ++V  +V+ FS  +  H + E++Y+++  LG  ++  G+   +  E
Sbjct: 641 KTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDEE 699



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 11/236 (4%)

Query: 199 LSEARRLFDEMPERDAVSW-NTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVW 253
           LS +  +    P  D + + N +L   +K+   +L+ ++  +I     HR+    + +V 
Sbjct: 18  LSRSISIIHHQPNNDVLDFFNDLLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVS 74

Query: 254 GYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
            Y+  G +  A+ +F+  P +    L+ W  I+      G  +EA  +Y +M + G+  D
Sbjct: 75  VYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSAD 134

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T   ++ ACA  G   L   VH  + +  F+ N +V N L+ MY K G +D+A  VF 
Sbjct: 135 GFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFE 194

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            M  +  VSWN M+ G A++     A  +F  M   G  P+  T+  +L +    G
Sbjct: 195 RMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCG 250


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 201/616 (32%), Positives = 329/616 (53%), Gaps = 70/616 (11%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFR 101
            + + +I   L++  + C  +  A  +F++I      DV  +N+++ A V++S    A  
Sbjct: 41  FESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALD 100

Query: 102 VFLDM----QEKGV--FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
           +F  M     EK     +D  +   +L AC         + +H    + G F D+FV N+
Sbjct: 101 LFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNA 160

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--- 212
           LID+Y+KCG++    A K+F  M  +D+VSWN+M+AG  + G    A  LF  M +    
Sbjct: 161 LIDAYAKCGLM--ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 218

Query: 213 -DAVSWNTILDGYAKAGEMNLAFELFEK------IPH----------------------- 242
            D V+W  ++ GY++ G  + A  +F +      +P+                       
Sbjct: 219 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 278

Query: 243 --------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWT 280
                                +++ ++ ++  YSK    + A+ +FD +P   + +V WT
Sbjct: 279 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 338

Query: 281 IIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           ++I G+A+ G + +A +L+ +M  E  G+ P+  T+  IL ACA    + +G ++HA + 
Sbjct: 339 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 398

Query: 339 KYRFKCNTN--VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           ++    ++   V N L++MY+KCG +D A  VF+ M++K  +SW +M+ G  MHG+G +A
Sbjct: 399 RHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA 458

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +F +M+  GF PD  TF+ VL AC+H G +D+G+ YF SM  DYG+ P+ EHY   ID
Sbjct: 459 LDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAID 518

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL R GRL +A + V+ MP+EP A++W  LL ACR H+ VELAE  L+ L+ +   + G+
Sbjct: 519 LLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAENDGS 578

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           YT++SNI+A  G W  VA +R  MKK+  +K  G S V+       F V D+ HP S QI
Sbjct: 579 YTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQI 638

Query: 577 YQMINTLGKDLKPVGH 592
           Y ++ +L   +K +G+
Sbjct: 639 YALLESLIDRIKAMGY 654



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 228/489 (46%), Gaps = 71/489 (14%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M   G   D+FT P +LKAC     +      H LI   G+  ++F+ N+L+  YS+CG 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG- 59

Query: 166 VGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGGELSEARRLFDEMP---------ER- 212
             +  A  +F  + +R   D++SWNS+++  VK      A  LF +M          ER 
Sbjct: 60  -SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 118

Query: 213 -----------------------------------DAVSWNTILDGYAKAGEMNLAFELF 237
                                              D    N ++D YAK G M  A ++F
Sbjct: 119 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT----LVPWTIIISGYAEKGMAK 293
             +  +++VSW+ MV GYS+ G+ + A  LF  M  +     +V WT +I+GY+++G + 
Sbjct: 179 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 238

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTN----- 347
           EA  ++ QM  +G  P+  T+IS+L+ACA  G    GM++HA S+       + +     
Sbjct: 239 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 298

Query: 348 ----VCNALVDMYAKCGSLDNAMSVFNG--MTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
               V NAL+DMY+KC S   A S+F+   + ++++V+W  M+ G A +G    AL LF 
Sbjct: 299 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 358

Query: 402 RMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLL 458
            M  E +G  P+ YT   +L AC H   I  G Q    + R +           C+I++ 
Sbjct: 359 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMY 418

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            + G +  A  +  SM  + +AI W +++     H     A ++ D  +R  G  P + T
Sbjct: 419 SKCGDVDTARHVFDSMS-QKSAISWTSMMTGYGMHGRGSEALDIFD-KMRKAGFVPDDIT 476

Query: 519 MLSNIFAAT 527
            L  ++A +
Sbjct: 477 FLVVLYACS 485



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 116/453 (25%), Positives = 196/453 (43%), Gaps = 68/453 (15%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K + QTK++    I+     D ++   LI + A C  M  A+KVFN ++  DV  +N ++
Sbjct: 134 KAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMV 193

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL-----KACNGKNWFHLVQMIH---- 138
               Q+     AF +F +M+++ +  D  T+  ++     + C+ +      QMI     
Sbjct: 194 AGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL 253

Query: 139 -------ALIYKCGYFG-----------------------------DIFVPNSLIDSYSK 162
                  +++  C   G                             D+ V N+LID YSK
Sbjct: 254 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 313

Query: 163 CGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------DA 214
           C       A+ +F  + + ER++V+W  MI G  + G+ ++A +LF EM         +A
Sbjct: 314 CR--SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNA 371

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKI-PHRNIVSWSTMVWG-----YSKDGDMEMAKLLF 268
            + + IL   A    + +  ++   +  H    S +  V       YSK GD++ A+ +F
Sbjct: 372 YTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVF 431

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D M  K+ + WT +++GY   G   EA  ++D+M +AG  PDD T + +L AC+  G++ 
Sbjct: 432 DSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVD 491

Query: 329 LGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYG 386
            G+    S++  Y            +D+ A+ G LD A      M  +   V W A+L  
Sbjct: 492 QGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSA 551

Query: 387 LAMHGQ---GEKALGLFSRMKDEGFGPDKYTFV 416
             +H      E AL     M  E  G   YT +
Sbjct: 552 CRVHSNVELAEHALNKLVEMNAENDG--SYTLI 582


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 203/554 (36%), Positives = 288/554 (51%), Gaps = 72/554 (12%)

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + DP   L N     C Q  L+ +A R    M+  GVF D  TY  L+K C+ +      
Sbjct: 17  VADPSP-LVNEFANFCHQWDLH-RAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEG 74

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +H  I+  GY   +FV N+L++ Y                                 V
Sbjct: 75  KRVHEHIFCKGYEPKMFVVNTLLNMY---------------------------------V 101

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKA---GEMNLAFELFEKIPHRNIVSWSTM 251
           K   L EA  LFDEMPER+ VSW T++  Y+       +     +F +    N+ ++S++
Sbjct: 102 KFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFREGVRPNMFTYSSV 161

Query: 252 VWG--------------------------------YSKDGDMEMAKLLFDRMPAKTLVPW 279
           +                                  YSK  D++ A  +FD MP + LV W
Sbjct: 162 LRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             II G+A+     EA  L+ +M+ AG   D  TL S+L AC    LL LG +VH  + K
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK 281

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
             F  +  + NAL+DMY KCGSL++A S F+ M +KD++SW+ M+ GLA +G   +AL L
Sbjct: 282 --FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALEL 339

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F  MK+ G  P+  T +GVL AC+HAG ++KG  YF SM++ +G+ P  EHYGC+IDLLG
Sbjct: 340 FESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLG 399

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+GRL EA++L+  M  EP+++ W TLLGACR H  V+LA      +I L+  D G Y +
Sbjct: 400 RAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYIL 459

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSNI+A T  W  VA VR  M     +K  G S +EVD ++H F + D  HPK E+I Q 
Sbjct: 460 LSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHPKIEEIVQR 519

Query: 580 INTLGKDLKPVGHA 593
           +N L + +  VG+ 
Sbjct: 520 LNDLIERVMGVGYV 533



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 137/302 (45%), Gaps = 37/302 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C  L   +QL   IIK  L+ D ++   LI   +    +  A+ VF+++   D+ ++
Sbjct: 162 LRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N++I    QNS   +A  +F  M+  G   D  T   +L+AC G     L + +H  + K
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK 281

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
             +  D+ + N+LID Y KCG   +  A   F  M E+D++SW++M+AGL + G   +A 
Sbjct: 282 --FDQDLILNNALIDMYCKCG--SLEDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQAL 337

Query: 204 RLFDEMPERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
            LF+ M E  +    ++   +L   + AG       L EK             W Y +  
Sbjct: 338 ELFESMKESGSRPNYITVLGVLFACSHAG-------LVEK------------GWYYFRS- 377

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
                K LF   P +      I + G A  G   EA +L  +ME    +PD  T  ++L 
Sbjct: 378 ----MKKLFGVDPGREHYGCLIDLLGRA--GRLDEAVKLIHEME---CEPDSVTWRTLLG 428

Query: 320 AC 321
           AC
Sbjct: 429 AC 430



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 45/213 (21%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+   ++K D  +D  +   LI     C  +  A   F+ + + DV  ++T++    QN
Sbjct: 273 RQVHVHVLKFD--QDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQN 330

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-----KNWFHLVQMIHALIYKCGYFG 148
             + QA  +F  M+E G   +  T   +L AC+      K W++   M            
Sbjct: 331 GYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSM------------ 378

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                                  KKLF     R+   +  +I  L + G L EA +L  E
Sbjct: 379 -----------------------KKLFGVDPGRE--HYGCLIDLLGRAGRLDEAVKLIHE 413

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           M  E D+V+W T+L        ++LA    +KI
Sbjct: 414 MECEPDSVTWRTLLGACRVHRNVDLAIYAAKKI 446


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 201/644 (31%), Positives = 332/644 (51%), Gaps = 73/644 (11%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           + +N  Q K+L   IIK     + ++   LI++ +    +  A  VF+ +  P+   +NT
Sbjct: 17  ETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNT 76

Query: 86  LIRACVQ----------------------NSLNA---------QAFRVFLDMQEKGVFTD 114
           ++ A  +                      NSL +         +A + +  M + GV   
Sbjct: 77  MLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNL 136

Query: 115 N-FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           N  T+  +L   + +    L + IH  I K G+   +FV +SL+D Y+K G+V  S+A +
Sbjct: 137 NRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLV--SVASQ 194

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233
           +F  + ER++V +N+MI GL++ G + +++RLF  M ERD++SW T++ G  + G    A
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEA 254

Query: 234 FELFEKIP---------------------------------------HRNIVSWSTMVWG 254
            +LF  +                                        + N+   S +V  
Sbjct: 255 MDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDM 314

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K   +  A+ +F RM  K +V WT ++ GY + G ++EA R++  M+  G++PDD TL
Sbjct: 315 YCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTL 374

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S++++CA    L  G + H             V NAL+ +Y KCGS++++  +F+ M+ 
Sbjct: 375 GSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSF 434

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D VSW A++ G A  G+  + + LF RM  +G  PD  TF+ VL AC+ AG +++G QY
Sbjct: 435 RDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQY 494

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F SM +D+GI+P  +HY CMIDL GR+GRL+EA   +  MP  P++I W TLL +CR + 
Sbjct: 495 FESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYG 554

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             E+ +   + L+ L   +P  Y +LS+I+AA G W+ VA +R  M++  A+K  G S +
Sbjct: 555 NEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWI 614

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           +  ++V+ FS  DQ  P S+QIY  +  L   +   G+    S+
Sbjct: 615 KYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASS 658



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 103/272 (37%), Gaps = 68/272 (25%)

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK------ 374
           C E+       K+H  I K      T + N L++ Y+K G++  A  VF+ M +      
Sbjct: 15  CCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSW 74

Query: 375 -------------------------KDLVSWNAMLYGLAMHGQGEKALGLF-SRMKDEGF 408
                                    +D VSWN+++ G   +G   +A+  + S MKD   
Sbjct: 75  NTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVL 134

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQ------------YFY------SMERDYGILP---- 446
             ++ TF  +L   +  G +D G Q            Y +       M    G++     
Sbjct: 135 NLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQ 194

Query: 447 --------QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
                    V  Y  MI  L RSG +K++ RL   M  E ++I W T++    ++    L
Sbjct: 195 VFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMK-ERDSISWTTMITGLIQNG---L 250

Query: 499 AEEVLDCL--IRLKGSDPGNYTMLSNIFAATG 528
             E +D    +R +G     YT  S + A  G
Sbjct: 251 EAEAMDLFRDMRQEGMAMDQYTFGSVLTACGG 282


>gi|359486281|ref|XP_003633424.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g45350, chloroplastic-like [Vitis vinifera]
          Length = 704

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 188/527 (35%), Positives = 297/527 (56%), Gaps = 36/527 (6%)

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           ++N +I++        + F +F  M E GV  D F++  +LKAC+          IH L+
Sbjct: 83  IWNAIIKSFSHKEDPREVFVIFNLMLESGVCVDKFSFSLVLKACSRLGLIKEGMQIHGLL 142

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K     D+F+ N L+  Y +CG +G+   ++LF  M ++D VS+NSMI G VK G +  
Sbjct: 143 GKMEIGSDVFLQNCLMCLYLRCGCLGI--VRQLFDRMMKKDSVSFNSMIDGYVKHGMVKS 200

Query: 202 ARRLFDEMP--ERDAVSWNTILDGYAKAGE-MNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
           A  LFD MP  ++  +SWN+++  YA++ E + +A+ELFE++P ++++SW++M+ G  K 
Sbjct: 201 AWELFDVMPMEQKILISWNSMISEYARSEERLKVAWELFEEMPKKDLISWNSMINGCVKC 260

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG------------ 306
           G ME    LF+RMP + +V    +++G+A+ G    A  L+ +M E              
Sbjct: 261 GKMENDHHLFNRMPKRXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVISCNAMMARYV 320

Query: 307 -------------------LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
                              L  D+ TL+  L+A A+ G    G+ +H  I    F  +  
Sbjct: 321 QNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLSEK 380

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           +  AL+D YAKCGS+DNA+SVF  +  K +  WNA+L GLA+HG GE A  LF  M+   
Sbjct: 381 LGVALIDTYAKCGSIDNALSVFEDIDNKSIDHWNAILSGLAIHGLGEVAFELFMEMEKLF 440

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             P+  TF+GVL AC HAG + +G+  F  M+R   + P+++HY CM+D+LG++G ++E 
Sbjct: 441 VKPNDITFIGVLNACNHAGLVKEGLMCFELMKRVDKVEPKLQHYVCMVDILGQAGHVEET 500

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            + V+ M +EPN ++W TLL ACR H    + E V   LI +   +  +Y +LSNI+A  
Sbjct: 501 KKFVEKMSIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYNLSSYVLLSNIYAGF 560

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           G WN V  +R+ MK+   +K  G S +E++  VH+F V D+ HP+++
Sbjct: 561 GIWNDVHRIRMMMKQRDLKKIPGCSQIELEGNVHKFFVRDKSHPQAK 607



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 79/362 (21%), Positives = 152/362 (41%), Gaps = 52/362 (14%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +     LF ++ K    R       +++  A   ++ +A  +F ++ + DV   N 
Sbjct: 259 KCGKMENDHHLFNRMPK----RXVVSXANMVNGHAKLGEIDIARGLFVEMPEMDVISCNA 314

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++   VQN    ++ + F DM  K +F DN T    L A      F     +H  I   G
Sbjct: 315 MMARYVQNGYLMESLKNFHDMLSKELFLDNATLLITLSAIAQLGHFDEGVALHCYIEDNG 374

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +     +  +LID+Y+KCG +  +L+  +F  +  + I  WN++++GL   G    A  L
Sbjct: 375 FSLSEKLGVALIDTYAKCGSIDNALS--VFEDIDNKSIDHWNAILSGLAIHGLGEVAFEL 432

Query: 206 FDEMP----ERDAVSWNTILDGYAKAG---EMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
           F EM     + + +++  +L+    AG   E  + FEL +++                  
Sbjct: 433 FMEMEKLFVKPNDITFIGVLNACNHAGLVKEGLMCFELMKRV------------------ 474

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
                     D++  K L  +  ++    + G  +E  +  ++M    ++P+D    ++L
Sbjct: 475 ----------DKVEPK-LQHYVCMVDILGQAGHVEETKKFVEKM---SIEPNDVVWRTLL 520

Query: 319 AACAESGLLGLGMKVHA---SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           +AC       +G  V     S++ Y    N +    L ++YA  G  ++   +   M ++
Sbjct: 521 SACRNHENFTIGEPVAKHLISVDSY----NLSSYVLLSNIYAGFGIWNDVHRIRMMMKQR 576

Query: 376 DL 377
           DL
Sbjct: 577 DL 578


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 316/570 (55%), Gaps = 36/570 (6%)

Query: 24   LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            + +C      +   A +IK  L +D  +  + I++    +++ LA+     +Q+P+V +Y
Sbjct: 780  IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFVY 839

Query: 84   NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            N L +  V  S   ++  +++ M    V   ++TY  L+KA +  + F   + + A I+K
Sbjct: 840  NALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWK 897

Query: 144  CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
             G+   + +  +LID YS  G                                  + EAR
Sbjct: 898  FGFGFHVKIQTTLIDFYSATG---------------------------------RIREAR 924

Query: 204  RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            ++FDEMPERD ++W T++  Y +  +M+ A  L  ++  +N  + + ++ GY   G++E 
Sbjct: 925  KVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 984

Query: 264  AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
            A+ LF++MP K ++ WT +I GY++    +EA  ++ +M E G+ PD+ T+ ++++ACA 
Sbjct: 985  AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 1044

Query: 324  SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
             G+L +G +VH    +  F  +  + +ALVDMY+KCGSL+ A+ VF  + KK+L  WN++
Sbjct: 1045 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 1104

Query: 384  LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
            + GLA HG  ++AL +F++M+ E   P+  TFV V  ACTHAG +D+G + + SM  DY 
Sbjct: 1105 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 1164

Query: 444  ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
            I+  VEHYG M+ L  ++G + EAL L+ +M  EPNA+IWG LL  CR H  + +AE   
Sbjct: 1165 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 1224

Query: 504  DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP-SGASSVEVDNEVHE 562
            + L+ L+  + G Y +L +++A    W  VA +R +M++   +K   G SS+ +D   H 
Sbjct: 1225 NKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHL 1284

Query: 563  FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            F+  D+ H  S+++  +++ +   +   G+
Sbjct: 1285 FAAADKSHSASDEVCLLLDEIYDQMGLAGY 1314


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 186/509 (36%), Positives = 298/509 (58%), Gaps = 41/509 (8%)

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
           HL+Q IHA++++ G      +   L  SY+  G +  S+A  LF       +  W ++I 
Sbjct: 45  HLLQ-IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVA--LFGRTQNPSVFFWTAIIH 101

Query: 192 GLVKGGELSEARRLFDEM----PERDAVSWNTIL-------------------------- 221
           G    G   +A   + +M     E +A ++++IL                          
Sbjct: 102 GHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYV 161

Query: 222 -----DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                D YA+ G++  A +LF+ +P +++VS + M+  Y+K G+++ A++LFD M  +  
Sbjct: 162 RTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDG 221

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W ++I GY + GM  EA  L+ +M +A  KP++ T++S+L+AC + G L  G  VH+ 
Sbjct: 222 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 281

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I     + N +V  ALVDMY+KCGSL++A  VF+ +  KD+V+WN+M+ G AMHG  ++A
Sbjct: 282 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEA 341

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L LF  M   G  P   TF+G+L AC H+G++ +G   F  M+ +YGI P++EHYGCM++
Sbjct: 342 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 401

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+G +++A  LV++M +EP+ ++WGTLLGACR H  + L E++++ L+    ++ G 
Sbjct: 402 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGT 461

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y +LSNI+AA G+W+ VA +R  MK +  +K  G SS+EV+N+VHEF      HPK ++I
Sbjct: 462 YILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEI 521

Query: 577 YQMINTLGKDLKPVGHAAKLSA---EIGE 602
           Y M+  +   LK  G+  +      +IGE
Sbjct: 522 YMMLEEINGWLKSHGYTPQTDIVLHDIGE 550



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/419 (28%), Positives = 195/419 (46%), Gaps = 50/419 (11%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K K ++   Q+ A + +  L   P +  KL  S A   ++  ++ +F   Q+P V  +  
Sbjct: 39  KSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTA 98

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I       L+ QA   +  M  +GV  + FT+  +LK C         + +H+   K G
Sbjct: 99  IIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVKLG 154

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D++V   L+D Y++ G   V  A++LF +M E+ +VS  +M+    K GEL  AR L
Sbjct: 155 FDSDLYVRTGLLDVYARGG--DVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVL 212

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHR---------------- 243
           FD M ERD V WN ++DGY + G  N A  LF ++      P+                 
Sbjct: 213 FDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGAL 272

Query: 244 -----------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
                            N+   + +V  YSK G +E A+L+FD++  K +V W  +I GY
Sbjct: 273 ESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGY 332

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCN 345
           A  G ++EA +L+  M   GL P + T I IL+AC  SG +  G  +   + ++Y  +  
Sbjct: 333 AMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPK 392

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ---GEKALGLF 400
                 +V++  + G ++ A  +   M  + D V W  +L    +HG+   GEK + L 
Sbjct: 393 IEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELL 451


>gi|413944077|gb|AFW76726.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 646

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 53/631 (8%)

Query: 1   MSAPIRAPTWFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
           ++ P   P W +   L+     L  L  C +  +  QL A +    L  + + A +L++ 
Sbjct: 13  LAPPSPRPAWNTNCNLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAF 72

Query: 59  LALC---RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115
            AL    R    A  +    + P+ ++  T++R  ++      A  +F  +    +  D 
Sbjct: 73  CALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDA 132

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKL 174
            T  F +KA    +     + IH + +K G+ G  +   N+L+  Y+   ++    A+KL
Sbjct: 133 RTIVFAVKAAATSS--SPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLL--PDARKL 188

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW----------------- 217
           F  M +RD+VSW ++I G  +GG   EA R+F  M   ++V W                 
Sbjct: 189 FDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAAGQMG 247

Query: 218 ------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                                   N ++D + K G +  A E+F+ +P +++ SW++MV 
Sbjct: 248 LLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVS 307

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y+K GD+E A  LF  +P + +V W+ +++ Y+   M  EA R+++ M  AG++P D T
Sbjct: 308 AYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDAT 367

Query: 314 LISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           L+S+L+ACA+   L +G  ++ + I  ++ +   N+ NA +DM+AKCG +  A  +F+ M
Sbjct: 368 LVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM 427

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K++VSWN M+    +HGQ E+AL LF   K  G  PD+ T++GVL AC+H G + +G 
Sbjct: 428 EDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGR 487

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
            +F  M+  YGI P+ EHY CMIDLLG+ G L+EA  + +SMPV  +   WG LL ACR 
Sbjct: 488 CHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRM 547

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VE+ +   D L  L  SD G Y ++S I+A+   W +V  +R  M+  R +K  G S
Sbjct: 548 HGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCS 607

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           S+EVD + HEF V D  H  SE IY  +  +
Sbjct: 608 SIEVDGKCHEFLVADVSHVHSEDIYAALGNI 638



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 188/441 (42%), Gaps = 70/441 (15%)

Query: 188 SMIAGLVKGGELSEARRLFDE-MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--- 243
           +M+ G ++ G+ + A  LF   + +R AV   TI+     A   +   E    +  +   
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVAFKRGF 161

Query: 244 ---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
              ++++ + +V  Y+    +  A+ LFD M  + +V WT +I GYA  G+  EA R++ 
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221

Query: 301 QMEEA-GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           +M  A  + P++ TL++  +A  + GLLGLG  VH  I +   + + N+ NALVDM+ KC
Sbjct: 222 RMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKC 281

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF------------------- 400
           G +  A  VF+GM  KD+ SW +M+   A  G  E A  LF                   
Sbjct: 282 GCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYS 341

Query: 401 -SRMKDE-----------GFGPDKYTFVGVLCACTHAGFIDKGVQYF--YSMERDYGILP 446
            + M DE           G  P   T V VL AC     +D G   +  Y +     + P
Sbjct: 342 HANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTP 401

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            + +    ID+  + G +  A RL  +M  + N + W T++ A   H      EE L   
Sbjct: 402 NLSN--AFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTMIMAHGLHGQ---PEEALHLF 455

Query: 507 IRLKGSD--PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
              KG+   P   T +  + +A      V+  R   K                    E  
Sbjct: 456 QEFKGNGILPDEATYI-GVLSACSHGGLVSEGRCHFK--------------------EMK 494

Query: 565 VCDQLHPKSEQIYQMINTLGK 585
           +   + P++E    MI+ LGK
Sbjct: 495 IVYGIEPRAEHYACMIDLLGK 515


>gi|357148182|ref|XP_003574661.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 553

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 188/553 (33%), Positives = 300/553 (54%), Gaps = 21/553 (3%)

Query: 56  ISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN-AQAFRVFLDMQEKGVFTD 114
           I++LA    +  A +VF+ +   DV  +N L+ A  +   +   A R+F DM  + V + 
Sbjct: 14  ITALARAGDVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSRNVISW 73

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-----DIFVPNSLIDSYSKCGVVGVS 169
           N      L   +             L     YF      ++   N+++    + G +  +
Sbjct: 74  NSVVAGCLAHGD-------------LDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDA 120

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
            A  LF  M +R++VS+ +M+ GL + GE++ AR +FD MPER+ VSW  ++ GY +   
Sbjct: 121 WA--LFGEMPQRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLVSWAAMITGYVENAM 178

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            + A +LFE +P +N+V+ + M+ GY KDGD+E A+ LFD +P K ++ W  +I+GY   
Sbjct: 179 FDEARKLFEAMPDKNVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHN 238

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G  +EA +L+  M   G+KPD  TLI+IL AC+   LL  G   HA   K   + +T+ C
Sbjct: 239 GHGEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQGRSTHAVATKTMLESSTSFC 298

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           NAL+ MY+KCG++  +  VF  +  +D+VSWN ++   A HG+ +KA+ LF  M+  G  
Sbjct: 299 NALMTMYSKCGNVGESELVFMNLKIQDIVSWNTIIAAYAQHGKYQKAIALFHEMETRGLI 358

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  T + +L AC H G ++  ++ F  M   Y I P  EHY C++D+LGR+G+L++A  
Sbjct: 359 PNDITILSMLSACGHVGRVNDSLELFDLMSSKYAISPSAEHYACVVDILGRAGQLEKACS 418

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
            ++ MP E    +WG LLGA + H  V+L E     L++      G Y MLSNI+AA G 
Sbjct: 419 YIKKMPFEAERNVWGALLGASKTHGNVQLGELAAKMLVQSDSVSSGPYVMLSNIYAAAGM 478

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           W +V  VR QMK+   +K  G S  E+ N+V+ F   D  HP+  +I   +  +   ++ 
Sbjct: 479 WGEVNRVRGQMKEKGVKKQPGYSWTEIANKVNMFVGGDASHPEMNKIISELRKISFHMQM 538

Query: 590 VGHAAKLSAEIGE 602
           +     +  E+ +
Sbjct: 539 MTDETHMVVELAQ 551



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 200/381 (52%), Gaps = 15/381 (3%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG-ELSEARRLFDEMPER 212
           N  I + ++ G   V+ A+++F +M  RD+VSWN+++  L + G +L  ARRLFD+MP R
Sbjct: 11  NQRITALARAG--DVAAARRVFDAMPRRDVVSWNALLTALWRAGRDLPAARRLFDDMPSR 68

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + +SWN+++ G    G+++ A   F + P RN+ SW+ M+ G  + G M+ A  LF  MP
Sbjct: 69  NVISWNSVVAGCLAHGDLDAASAYFARAPRRNVASWNAMLAGLVRLGRMDDAWALFGEMP 128

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + +V +T ++ G A +G    A  ++D M E  L     +  +++    E+ +     K
Sbjct: 129 QRNVVSYTTMVDGLARRGEVARAREVFDAMPERNLV----SWAAMITGYVENAMFDEARK 184

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +  ++       N   C A++  Y K G +++A  +F+G+  KD++SWNAM+ G   +G 
Sbjct: 185 LFEAMPDK----NVVACTAMITGYCKDGDVESARRLFDGIPVKDVISWNAMITGYVHNGH 240

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           GE+A+ L   M  EG  PD  T + +L AC+    + +G +  +++     +        
Sbjct: 241 GEEAMKLHIIMFREGVKPDHATLIAILTACSALALLRQG-RSTHAVATKTMLESSTSFCN 299

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
            ++ +  + G + E+  +  ++ ++ + + W T++ A  +H   + A  +   +   +G 
Sbjct: 300 ALMTMYSKCGNVGESELVFMNLKIQ-DIVSWNTIIAAYAQHGKYQKAIALFHEM-ETRGL 357

Query: 513 DPGNYTMLSNIFAATGDWNKV 533
            P + T+LS + +A G   +V
Sbjct: 358 IPNDITILS-MLSACGHVGRV 377


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 187/576 (32%), Positives = 298/576 (51%), Gaps = 45/576 (7%)

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFL 121
           R+   A  VF++       ++   I  C +    A   R F +M  +G  T N F    +
Sbjct: 59  RRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAV 118

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           ++ C G       + +H  + + G   D+ + N+++D Y+KCG      A+++F +M ER
Sbjct: 119 VRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCG--QFERARRVFGAMAER 176

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D VSWN  I   ++ G++  + +LFDE P RD  SWNTI+ G  ++G    A     ++ 
Sbjct: 177 DAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMA 236

Query: 242 HRNIV----SWST-----------------------------------MVWGYSKDGDME 262
              +V    ++ST                                   ++  Y K G +E
Sbjct: 237 QAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLE 296

Query: 263 MAKLLFDRMPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            A  +FD     T      W+ +++GY + G  +EA  L+ +M   G+  D  TL S+ A
Sbjct: 297 AAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAA 356

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA  G++  G +VH  + K  +K +  + +A+VDMYAKCG+L++A S+F+    K++  
Sbjct: 357 ACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAV 416

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W +ML   A HGQG  A+ LF RM  E   P++ T VGVL AC+H G + +G  YF  M+
Sbjct: 417 WTSMLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQ 476

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            +YGI+P +EHY C++DL GRSG L +A   ++   +   AI+W TLL ACR H   E A
Sbjct: 477 EEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYA 536

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +   + L++L+  D G+Y MLSNI+A    W+    +R+ M++ + +K  G S + + N 
Sbjct: 537 KLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNT 596

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VH F   D  HP+S +IY  +  L + LK +G+ ++
Sbjct: 597 VHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYTSR 632



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 179/411 (43%), Gaps = 44/411 (10%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++   K++   +++  +  D  +   ++   A C Q   A +VF  + + D   +N  I 
Sbjct: 127 DVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIG 186

Query: 89  ACVQN-------------------SLN------------AQAFRVFLDMQEKGVFTDNFT 117
           AC+Q+                   S N            A A      M + GV  +++T
Sbjct: 187 ACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYT 246

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y              L + +H  +      GD FV +SL+D Y KCG++  + +     S
Sbjct: 247 YSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWS 306

Query: 178 MGERDI-VSWNSMIAGLVKGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
              RD+  +W++M+AG V+ G   EA    RR+  E    D  +  ++    A  G +  
Sbjct: 307 PLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQ 366

Query: 233 AFEL---FEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
             ++    EK+ ++ +    S +V  Y+K G++E A+ +FDR   K +  WT ++  YA 
Sbjct: 367 GRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYAS 426

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTN 347
            G  + A  L+++M    + P++ TL+ +L+AC+  GL+  G      +  +Y    +  
Sbjct: 427 HGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIE 486

Query: 348 VCNALVDMYAKCGSLDNAMSVF--NGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             N +VD+Y + G LD A +    N +  + +V W  +L    +H   E A
Sbjct: 487 HYNCIVDLYGRSGLLDKAKNFIEENNINHEAIV-WKTLLSACRLHQHNEYA 536


>gi|357150569|ref|XP_003575504.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 548

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 192/557 (34%), Positives = 302/557 (54%), Gaps = 43/557 (7%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI--QDPDVHLYNTLIRAC 90
            +QL AQ++   L+  P  A   ++ +A       A  +F+ +     +V+L+   + + 
Sbjct: 24  ARQLHAQLL---LRGLPLPARAAVTLIASSSSPQYARAIFDSVPAASANVYLWTATVSSY 80

Query: 91  VQNS---LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            +++   L A+AF +F+ M   G   + FT   +LK+ +     H V  +H  + K G  
Sbjct: 81  AKHASPALAAEAFPLFMFMLRSGPRPNGFTVSSVLKSLSKLRAAHQVCQVHGFLVKAGLA 140

Query: 148 GDIFVPNSLIDSYSK-CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             + V  +L+DSY   C V                                   +ARR+F
Sbjct: 141 SSLHVGATLLDSYGNLCRV----------------------------------KDARRVF 166

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           DEMP  + V  N ++ GY KAG++  A ++F+ +  R+ +SW+T++ GY + GD  +A+ 
Sbjct: 167 DEMPRSNVVVGNAMVSGYVKAGDVEAARQVFDGMVERDSISWNTLMSGYLRRGDAGLARD 226

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           LFD MP + +  W ++IS  +E G+  ++  +++QM     +PD  T+  +++ACA+ G 
Sbjct: 227 LFDEMPQRNVNSWNMMISACSEVGLWADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGF 286

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L +  +V+  + K   + N +V N+LVDM+AKCG    A  +F  M  KD+VS+N M+  
Sbjct: 287 LSVARQVYGLLRKGCVEMNCHVHNSLVDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSA 346

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LA HG G+ AL LF +M + G  PD  TF+GVL AC HAG +D G  YF +M   Y I  
Sbjct: 347 LAHHGHGKDALKLFEQMIEGGLQPDAVTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEK 406

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
             +HY CM+DL GR G ++EA   V+ MPV+P+A IWG LL ACRKH  +++ E     L
Sbjct: 407 SADHYACMVDLYGRVGLIEEAHYFVKIMPVKPHAGIWGALLNACRKHCNIDVGEVAAREL 466

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           IR++  +PGNY +LSN  A +  W+ V +VR  M+     K +G S VEV++ VHEF + 
Sbjct: 467 IRIEPMNPGNYVLLSNTLAWSQQWDAVGDVRQLMRGNGIDKNTGFSWVEVESVVHEFLMG 526

Query: 567 DQLHPKSEQIYQMINTL 583
           D  HP  ++I  ++  L
Sbjct: 527 DFSHPSFDEICGILELL 543



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 174/381 (45%), Gaps = 53/381 (13%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA-LCRQMGLAIKVFNDIQDPD 79
           L++L K +  +Q  Q+   ++K  L    ++   L+ S   LCR +  A +VF+++   +
Sbjct: 115 LKSLSKLRAAHQVCQVHGFLVKAGLASSLHVGATLLDSYGNLCR-VKDARRVFDEMPRSN 173

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V + N ++   V+      A +VF  M E+    D+ ++                     
Sbjct: 174 VVVGNAMVSGYVKAGDVEAARQVFDGMVER----DSISW--------------------- 208

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
                         N+L+  Y + G  G  LA+ LF  M +R++ SWN MI+   + G  
Sbjct: 209 --------------NTLMSGYLRRGDAG--LARDLFDEMPQRNVNSWNMMISACSEVGLW 252

Query: 200 SEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELF----EKIPHRNIVSWSTM 251
           +++  +F++M       DA +   ++   A+ G +++A +++    +     N    +++
Sbjct: 253 ADSVAVFNQMRFMSFRPDAATMAVLMSACAQLGFLSVARQVYGLLRKGCVEMNCHVHNSL 312

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  ++K G    A LLF  M  K +V + +++S  A  G  K+A +L++QM E GL+PD 
Sbjct: 313 VDMFAKCGCFSEAHLLFAEMDPKDVVSYNVMVSALAHHGHGKDALKLFEQMIEGGLQPDA 372

Query: 312 GTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            T + +L+ACA +GL+  G     ++   Y  + + +    +VD+Y + G ++ A     
Sbjct: 373 VTFLGVLSACAHAGLVDSGKYYFETMGTTYAIEKSADHYACMVDLYGRVGLIEEAHYFVK 432

Query: 371 GMTKKDLVS-WNAMLYGLAMH 390
            M  K     W A+L     H
Sbjct: 433 IMPVKPHAGIWGALLNACRKH 453


>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
          Length = 1753

 Score =  342 bits (876), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 207/661 (31%), Positives = 335/661 (50%), Gaps = 87/661 (13%)

Query: 24   LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP----- 78
            L +C   + ++Q+ +QII     R  ++A +++S  A    +  A +VF     P     
Sbjct: 879  LQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE--VSPIECFS 936

Query: 79   DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            ++ L+N+++RA V +    +A  ++  M++ GV  D FT+P +++AC       L + +H
Sbjct: 937  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 996

Query: 139  ALIYKCGYFGDIFVPNSLIDSYSKCG-----------------------VVGVSL----- 170
              + + G+  ++ V N L+  Y K G                       V G +L     
Sbjct: 997  GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 1056

Query: 171  -AKKLFMSMG----ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------------- 212
             A ++F  MG    E ++V+W S+++   + G+  E   LF  M  R             
Sbjct: 1057 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 1116

Query: 213  ----DAVSW----------------------NTILDGYAKAGEMNLAFELFEKIPHRNIV 246
                D  ++                      N+++  Y K G +N A  LF +I  +NIV
Sbjct: 1117 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 1176

Query: 247  SWSTMVWGYSKDGDMEMAKLLF------DRMPA--KTLVPWTIIISGYAEKGMAKEAARL 298
            SW+ ++  Y+  G  + A  +F      D  P     +V W+ +I G+A KG  +EA  L
Sbjct: 1177 SWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 1236

Query: 299  YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
            + +M+ A +K +  T+ S+L+ CAE   L LG ++H  + +     N  V N L++MY K
Sbjct: 1237 FRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTK 1296

Query: 359  CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
             GS      VF  +  KDL+SWN M+ G  +HG GE A+  F +M  +GF PD  TFV V
Sbjct: 1297 SGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 1356

Query: 419  LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
            L AC+HAG + +G + F  M +++ + PQ+EHY CM+DLLGR+G L+EA ++V+SMPVEP
Sbjct: 1357 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEP 1416

Query: 479  NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
            NA +WG LL +CR H   E+AEE    +  L     G+Y +LSNI+AA+G W   A VR+
Sbjct: 1417 NACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRI 1476

Query: 539  QMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
              K    +K  G S ++V  +V+ FS  +  H + E++Y+++  LG  ++  G+   +  
Sbjct: 1477 SAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDE 1536

Query: 599  E 599
            E
Sbjct: 1537 E 1537



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 17/249 (6%)

Query: 199  LSEARRLFDEMPERDAVSW-NTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVW 253
            LS +  +    P  D + + N +L   +K+   +L+ ++  +I     HR+    + +V 
Sbjct: 856  LSRSISIIHHQPNNDVLDFFNDLLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVS 912

Query: 254  GYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
             Y+  G +  A+ +F+  P +    L+ W  I+      G  +EA  +Y +M + G+  D
Sbjct: 913  VYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSAD 972

Query: 311  DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
              T   ++ ACA  G   L   VH  + +  F+ N +V N L+ MY K G +D+A  VF 
Sbjct: 973  GFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFE 1032

Query: 371  GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
             M  +  VSWN M+ G A++     A  +F  M   G  P+  T+  +L +    G    
Sbjct: 1033 RMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCG---- 1088

Query: 431  GVQYFYSME 439
              Q+  +ME
Sbjct: 1089 --QHVETME 1095


>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
          Length = 954

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 207/661 (31%), Positives = 335/661 (50%), Gaps = 87/661 (13%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP----- 78
           L +C   + ++Q+ +QII     R  ++A +++S  A    +  A +VF     P     
Sbjct: 41  LQQCSKSHLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFE--VSPIECFS 98

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           ++ L+N+++RA V +    +A  ++  M++ GV  D FT+P +++AC       L + +H
Sbjct: 99  NLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGSRKLCRSVH 158

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCG-----------------------VVGVSL----- 170
             + + G+  ++ V N L+  Y K G                       V G +L     
Sbjct: 159 GHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCH 218

Query: 171 -AKKLFMSMG----ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------------- 212
            A ++F  MG    E ++V+W S+++   + G+  E   LF  M  R             
Sbjct: 219 GASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVL 278

Query: 213 ----DAVSW----------------------NTILDGYAKAGEMNLAFELFEKIPHRNIV 246
               D  ++                      N+++  Y K G +N A  LF +I  +NIV
Sbjct: 279 SVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIV 338

Query: 247 SWSTMVWGYSKDGDMEMAKLLF------DRMPA--KTLVPWTIIISGYAEKGMAKEAARL 298
           SW+ ++  Y+  G  + A  +F      D  P     +V W+ +I G+A KG  +EA  L
Sbjct: 339 SWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALEL 398

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           + +M+ A +K +  T+ S+L+ CAE   L LG ++H  + +     N  V N L++MY K
Sbjct: 399 FRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTK 458

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
            GS      VF  +  KDL+SWN M+ G  +HG GE A+  F +M  +GF PD  TFV V
Sbjct: 459 SGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAV 518

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L AC+HAG + +G + F  M +++ + PQ+EHY CM+DLLGR+G L+EA ++V+SMPVEP
Sbjct: 519 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEP 578

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           NA +WG LL +CR H   E+AEE    +  L     G+Y +LSNI+AA+G W   A VR+
Sbjct: 579 NACVWGALLNSCRMHKNTEVAEETASQIFNLNSEIAGSYMLLSNIYAASGRWEDSAKVRI 638

Query: 539 QMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
             K    +K  G S ++V  +V+ FS  +  H + E++Y+++  LG  ++  G+   +  
Sbjct: 639 SAKTKGLKKTPGQSWIQVKKKVYMFSAGNTQHAELEEVYRILKDLGLQMEVEGYIPDIDE 698

Query: 599 E 599
           E
Sbjct: 699 E 699



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 115/249 (46%), Gaps = 17/249 (6%)

Query: 199 LSEARRLFDEMPERDAVSW-NTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVW 253
           LS +  +    P  D + + N +L   +K+   +L+ ++  +I     HR+    + +V 
Sbjct: 18  LSRSISIIHHQPNNDVLDFFNDLLQQCSKS---HLSQQIHSQIIVTGSHRSAFLAARVVS 74

Query: 254 GYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
            Y+  G +  A+ +F+  P +    L+ W  I+      G  +EA  +Y +M + G+  D
Sbjct: 75  VYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGVSAD 134

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T   ++ ACA  G   L   VH  + +  F+ N +V N L+ MY K G +D+A  VF 
Sbjct: 135 GFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFE 194

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            M  +  VSWN M+ G A++     A  +F  M   G  P+  T+  +L +    G    
Sbjct: 195 RMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCG---- 250

Query: 431 GVQYFYSME 439
             Q+  +ME
Sbjct: 251 --QHVETME 257


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 198/642 (30%), Positives = 337/642 (52%), Gaps = 74/642 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N  + K L + IIK     + ++   LISS A    +  A KVF+ +  P+++ +NT++ 
Sbjct: 24  NFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILS 83

Query: 89  ACVQ----------------------NSLNA---------QAFRVF-LDMQEKGVFTDN- 115
           A  +                      NSL +         Q+ + + L ++  G F  N 
Sbjct: 84  AYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNR 143

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
            T+  LL   + +    L + IH  + K G+   +FV + L+D YSK G++  S A+K+F
Sbjct: 144 ITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI--SCARKVF 201

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFE 235
             + E+++V +N++I GL++ G + +++RLF EM ERD++SW +++ G+ + G    A +
Sbjct: 202 DELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAID 261

Query: 236 LFEKIP---------------------------------------HRNIVSWSTMVWGYS 256
           +F ++                                          NI   S +V  Y 
Sbjct: 262 IFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYC 321

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K  +++ A+ +F +M  K +V WT ++ GY + G ++EA + +  M++ G++PDD TL S
Sbjct: 322 KCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGS 381

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++++CA    L  G + HA            V NALV +Y KCGS++++  +FN ++ KD
Sbjct: 382 VISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKD 441

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            V+W A++ G A  G+  + +GLF  M   G  PDK TF+GVL AC+ AG ++KG Q F 
Sbjct: 442 EVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFE 501

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM  ++GI+P  +HY CMIDL  R+GR++EA   +  MP  P+AI W TLL +CR +  +
Sbjct: 502 SMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNM 561

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ++ +   + L+ L   +  +Y +LS+++AA G W +VA +R  M+    +K  G S ++ 
Sbjct: 562 DIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKY 621

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            N+VH FS  D+ +P S+QIY  +  L   +   G+   +++
Sbjct: 622 KNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNS 663



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 139/526 (26%), Positives = 234/526 (44%), Gaps = 111/526 (21%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y  LLK C   + F   + +H+ I K   + + F+ N+LI SY+K G   +  A K+F  
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLG--SIPYACKVFDQ 69

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA------------ 225
           M   ++ SWN++++   K G +SE   LFD MP RD VSWN+++ GYA            
Sbjct: 70  MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAY 129

Query: 226 -----KAGEMNLAFELFEKI---------------PHRNIVSW---------STMVWGYS 256
                  G  NL    F  +                H ++V +         S +V  YS
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 257 KDGDMEMAKLLFDRMPAKTLV-------------------------------PWTIIISG 285
           K G +  A+ +FD +P K +V                                WT +I+G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           + + G+ ++A  ++ +M+   L+ D  T  S+L AC     L  G +VHA I +  +K N
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDN 309

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V +ALVDMY KC ++ +A +VF  MT K++VSW AML G   +G  E+A+  FS M+ 
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
            G  PD +T   V+ +C +   +++G Q F++     G++  +     ++ L G+ G ++
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIE 428

Query: 466 EALRLVQSMP----------------------------------VEPNAIIWGTLLGACR 491
           ++ RL   +                                   ++P+ + +  +L AC 
Sbjct: 429 DSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488

Query: 492 KHNAVELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVAN 535
           +   VE   ++ + +I   G  P   +YT + ++F+  G   +  N
Sbjct: 489 RAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARN 534


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 201/631 (31%), Positives = 322/631 (51%), Gaps = 59/631 (9%)

Query: 1   MSAPIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA 60
           + +P+   T+     LL   +    +   L + +++F  I      R+ +    L+S+ A
Sbjct: 44  LKSPVAGETF-----LLNTLVSTYARLGRLREARRVFDGIP----LRNTFSYNALLSAYA 94

Query: 61  LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN--AQAFRVFLDMQEKGVFTDNFTY 118
              +   A  +F  I DPD   YN ++ A  ++       A R    M       + +++
Sbjct: 95  RLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSF 154

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
              L AC  +      + +H L+ +  +  D+ +  +L+D Y+KC       A+++F +M
Sbjct: 155 ASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCE--RPVDARRVFDAM 212

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEM-----------------------PER--- 212
            ER++VSWNS+I    + G + EA  LF EM                        ER   
Sbjct: 213 PERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGR 272

Query: 213 --------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
                         D V  N ++D YAK G    A  +F+ +P R++VS ++++ GY+K 
Sbjct: 273 QVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKS 332

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
            ++E A+++F +M  K ++ W ++I+ YA+ G  +EA RL+ Q++   + P   T  ++L
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392

Query: 319 AACAESGLLGLGMKVHASINK--YRF----KCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            AC    +L LG + H  + K  +RF    + +  V N+LVDMY K GS+D+   VF  M
Sbjct: 393 NACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             +D VSWNAM+ G A +G+ + AL LF RM      PD  T +GVL AC H+G +D+G 
Sbjct: 453 AARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGR 512

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           ++F+ M  D+GI P  +HY CM+DLLGR+G LKEA  L++ MP EP++++W +LLGACR 
Sbjct: 513 RHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRL 572

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VEL E     L  L   + G Y +LSN++A  G W  V  VR  MK     K  G S
Sbjct: 573 HKNVELGERTAGRLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCS 632

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            +E+ ++++ F   D  HP   +I+  +  +
Sbjct: 633 WIEIGSKMNVFLARDNRHPCRNEIHSTLRII 663



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/473 (24%), Positives = 212/473 (44%), Gaps = 91/473 (19%)

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H  + K    G+ F+ N+L+ +Y++ G   +  A+++F  +  R+  S+N++++   + G
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLG--RLREARRVFDGIPLRNTFSYNALLSAYARLG 97

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAG----------------------------- 228
              EAR LF+ +P+ D  S+N ++   A+ G                             
Sbjct: 98  RPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASA 157

Query: 229 ------EMNL-----AFELFEKIPHRNIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTL 276
                 E +L        L  + PH + V   T +V  Y+K      A+ +FD MP + +
Sbjct: 158 LSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERNV 217

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W  +I+ Y + G   EA  L+ +M   G  PD+ TL S+++ACA       G +VHA 
Sbjct: 218 VSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAH 277

Query: 337 -INKYRFKCNTNVCNALVDMYAKCG-------------------------------SLDN 364
            + + R + +  + NALVDMYAKCG                               ++++
Sbjct: 278 MVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVED 337

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  VF+ M +K++++WN ++   A +G+ E+A+ LF ++K +   P  YT+  VL AC +
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 397

Query: 425 AGFIDKGVQYFYSMER-----DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
              +  G Q    + +     D+G    V     ++D+  ++G + +  ++ + M    N
Sbjct: 398 IAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN 457

Query: 480 AIIWGTLLGAC----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            + W  ++       R  +A+ L E +L         +P + TM+  + +A G
Sbjct: 458 -VSWNAMIVGYAQNGRAKDALHLFERML-----CSNENPDSVTMIG-VLSACG 503


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 210/620 (33%), Positives = 309/620 (49%), Gaps = 76/620 (12%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKL-DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           LQ+L   K+L Q  QL A +     L+R+ Y+A KL +  A+C  M  A  +F+ I   +
Sbjct: 29  LQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKN 88

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             L+N++IR    N+  ++A  ++L M   G   DNFTYPF+LKAC       + + +HA
Sbjct: 89  SFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKVHA 148

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
           L+   G   D++V NS++  Y                                  K G++
Sbjct: 149 LVVVGGLEEDVYVGNSILSMY---------------------------------FKFGDV 175

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM-------- 251
             AR +FD M  RD  SWNT++ G+ K GE   AFE+F  +     V   T         
Sbjct: 176 EAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSAC 235

Query: 252 -----------VWGYS-KDGD----------------------MEMAKLLFDRMPAKTLV 277
                      + GY  ++G+                      +  A+ LF+ +  K +V
Sbjct: 236 GDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVV 295

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  +ISGY + G A +A  L+ +M   G  PD+ T+IS+LAAC +   L LG  V + +
Sbjct: 296 SWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYV 355

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  +  N  V  AL+ MYA CGSL  A  VF+ M +K+L +   M+ G  +HG+G +A+
Sbjct: 356 VKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAI 415

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +F  M  +G  PD+  F  VL AC+H+G +D+G + FY M RDY + P+  HY C++DL
Sbjct: 416 SIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDL 475

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G L EA  ++++M ++PN  +W  LL ACR H  V+LA      L  L       Y
Sbjct: 476 LGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGY 535

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
             LSNI+AA   W  V NVR  + K R +KP   S VE++  VH+F V D  H +S+ IY
Sbjct: 536 VCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIY 595

Query: 578 QMINTLGKDLKPVGHAAKLS 597
             +  L + LK  G+    S
Sbjct: 596 AKLKDLNEQLKKAGYKPDTS 615


>gi|242082435|ref|XP_002445986.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
 gi|241942336|gb|EES15481.1| hypothetical protein SORBIDRAFT_07g029130 [Sorghum bicolor]
          Length = 567

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 197/581 (33%), Positives = 309/581 (53%), Gaps = 31/581 (5%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L  +  L A+ +  D QR        IS+LA    +  A +VF+ +   DV  +N L+ A
Sbjct: 4   LRGSASLAARRLLRDNQR--------ISALARAGDVAAARRVFDAMPHRDVVSWNALLTA 55

Query: 90  CVQNSLN--AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA-LIYKCGY 146
             +   +    A R+F    E     D  ++  ++  C          + H  L     Y
Sbjct: 56  LWRAGRHHLPAARRLF---DEAMPSRDVVSWNSIIAGC----------LAHGDLDAASAY 102

Query: 147 FG-----DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           F      ++   N+++    + G      A +LF  M +R++VS+ +M+ GL + GE++ 
Sbjct: 103 FAGAPKRNVATWNAMLAGLLRLG--RADDADRLFGEMPKRNVVSYTTMVDGLARRGEVAR 160

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           AR +FD MP+R+ VSW  ++ GY + G    A +LFE +P +N+V+ + M+  Y K GD+
Sbjct: 161 AREVFDAMPDRNLVSWAAMISGYVENGMFVEATKLFEAMPEKNVVACTAMITSYCKQGDV 220

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A+ LFD + AK ++ W  +I+GY   G  +EA RL+  M   G+KPD  TLI++L AC
Sbjct: 221 ESARRLFDGIRAKDVISWNTMIAGYVHNGHGEEAMRLHAVMFREGVKPDHATLIAVLTAC 280

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           +   LL  G   HA   K   +   +  NAL+ MY+KCG++  +  VF  +  KD+VSWN
Sbjct: 281 SALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWN 340

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            ++   A HG+ +K + LF  M+  G  PD  TF+ VL AC H G +D  ++ F  M   
Sbjct: 341 TIIAAYAQHGKYQKVIALFHEMEMTGLIPDDITFLSVLSACGHVGKVDASLKLFDLMSSK 400

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y I P+ EHY C++D+L R+G+L++A   ++ MP+E    +WG+LLGAC+ H  V+L E 
Sbjct: 401 YAISPRAEHYACIVDILSRAGQLEKASSYIKDMPLEAEKNVWGSLLGACQMHGNVQLGEL 460

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L++      G Y +LSNI+AA G W +V  VR QMK+   +K  G S  E+ NEVH
Sbjct: 461 AAKMLVQSDSESSGPYVILSNIYAAAGMWGQVNQVRGQMKERGVKKQPGYSWTEIANEVH 520

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
            F   D  HP+  +I   +  +   ++ V + A +  E+ +
Sbjct: 521 MFVGGDASHPEMRKIISELRKISFHMRMVTNEAHIMVELAQ 561


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  341 bits (875), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 194/583 (33%), Positives = 316/583 (54%), Gaps = 10/583 (1%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L   +++ A +I+    +D + A  L+   +    + +A  VF  + + DV  +N  I
Sbjct: 216 RDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFI 275

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV +  +  A  + L M+  G+  + FT   +LKAC G   F+L + IH  + K    
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANAD 335

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D ++   L+D Y+K G++    AKK+F  + +RD+V WN++I+G   G + +EA  LF 
Sbjct: 336 SDNYIAFGLVDMYAKHGLL--DDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFC 393

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDG 259
            M +     +  +   +L   A    ++   ++         +S S +V G    Y K  
Sbjct: 394 RMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCD 453

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +  A  +F++  +  ++ +T +I+  ++    ++A +L+ +M   GL PD   L S+L 
Sbjct: 454 CLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLN 513

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA       G +VHA + K +F  +    NALV  YAKCGS+++A   F+G+ +K +VS
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVS 573

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W+AM+ GLA HG G++AL +F RM DE   P+  T   VLCAC HAG +D+  +YF SM+
Sbjct: 574 WSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             +GI    EHY CMIDLLGR+G+L +A+ LV SMP + NA +WG LL A R H   EL 
Sbjct: 634 EMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELG 693

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
               + L  L+    G + +L+N +A+ G W+ VA VR  MK ++ +K    S VE+ ++
Sbjct: 694 RLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDK 753

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           VH F V D+ HP++  IY  ++ LG  +   G+   +  ++ +
Sbjct: 754 VHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHD 796



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 240/501 (47%), Gaps = 16/501 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPDVHLYNTLIRACVQN 93
           QL A  +   L  D ++A  L++       +  A  VF++   + +   +N L+ A V+N
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
              + A +VF +M   GV  + F +  ++ AC G       + +HA++ + GY  D+F  
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+D YSK G   + +A  +F  + E D+VSWN+ I+G V  G    A  L  +M    
Sbjct: 241 NALVDMYSKLG--DIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 214 AV----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAK 265
            V    + ++IL   A +G  NL  ++   +   N  S + + +G    Y+K G ++ AK
Sbjct: 299 LVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAK 358

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD +P + LV W  +ISG +      EA  L+ +M + G   +  TL ++L + A   
Sbjct: 359 KVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLE 418

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            +    +VHA   K  F  +++V N L+D Y KC  L+ A  VF      D++++ +M+ 
Sbjct: 419 AISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMIT 478

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
            L+    GE A+ LF  M  +G  PD +    +L AC      ++G Q + + ++R +  
Sbjct: 479 ALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-- 536

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +  V     ++    + G +++A      +P E   + W  ++G   +H   + A +V  
Sbjct: 537 MSDVFAGNALVYTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQHGHGKRALDVFH 595

Query: 505 CLIRLKGSDPGNYTMLSNIFA 525
            ++    S P + TM S + A
Sbjct: 596 RMVDEHIS-PNHITMTSVLCA 615



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 157/575 (27%), Positives = 246/575 (42%), Gaps = 121/575 (21%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L Q   + A ++K  L         L+S  + CR  G A +VF++I DP    +++L+
Sbjct: 18  QSLLQGAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLV 75

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A   N++   A   F  M+   V  + F  P +LK C     F     +HAL    G  
Sbjct: 76  TAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLK-CAPDAGFG--TQLHALAMATGLG 132

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLF 206
           GDIFV N+L+  Y   G   V  A+ +F   G ER+ VSWN +++  VK    S A ++F
Sbjct: 133 GDIFVANALVAMYGGFGF--VDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVF 190

Query: 207 DEMP---------------------------------------ERDAVSWNTILDGYAKA 227
            EM                                        ++D  + N ++D Y+K 
Sbjct: 191 GEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKL 250

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           G++ +A  +F K+P  ++VSW+                                 ISG  
Sbjct: 251 GDIRMAAVVFGKVPETDVVSWNA-------------------------------FISGCV 279

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
             G  + A  L  QM+ +GL P+  TL SIL ACA SG   LG ++H  + K     +  
Sbjct: 280 LHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNY 339

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           +   LVDMYAK G LD+A  VF+ + ++DLV WNA++ G +   Q  +AL LF RM+ EG
Sbjct: 340 IAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEG 399

Query: 408 FGPDKYTFVGVLCAC-----------THA---------------GFIDK-----GVQYFY 436
           F  ++ T   VL +             HA               G ID       + Y Y
Sbjct: 400 FDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAY 459

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKH 493
            +   +G    +  +  MI  L +    ++A++L   M    ++P+  +  +LL AC   
Sbjct: 460 RVFEKHGSYDIIA-FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASL 518

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +A E  ++V   LI+ +         +S++FA   
Sbjct: 519 SAYEQGKQVHAHLIKRQ--------FMSDVFAGNA 545



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 187/407 (45%), Gaps = 14/407 (3%)

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           IHA + K G F  +F  N L+  YSKC + G   A+++F  + +   VSW+S++      
Sbjct: 26  IHAHLLKSGLFA-VF-RNHLLSFYSKCRLPGS--ARRVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELFEKIPHR----NIVSWSTM 251
               +A   F  M          +L    K A +     +L           +I   + +
Sbjct: 82  AMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQLHALAMATGLGGDIFVANAL 141

Query: 252 VWGYSKDGDMEMAKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           V  Y   G ++ A+++FD     +  V W  ++S Y +      A +++ +M   G++P+
Sbjct: 142 VAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEMVWGGVQPN 201

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           +     ++ AC  S  L  G KVHA + +  +  +    NALVDMY+K G +  A  VF 
Sbjct: 202 EFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFG 261

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            + + D+VSWNA + G  +HG  + AL L  +MK  G  P+ +T   +L AC  +G  + 
Sbjct: 262 KVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNL 321

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G Q    M +          +G ++D+  + G L +A ++   +P + + ++W  L+  C
Sbjct: 322 GRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGC 379

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
             H A       L C +R +G D  N T L+ +  +T     +++ R
Sbjct: 380 -SHGAQHAEALSLFCRMRKEGFDV-NRTTLAAVLKSTASLEAISDTR 424



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/342 (24%), Positives = 149/342 (43%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    + ++ T+Q+ A   KL    D ++   LI S   C  +  A +VF 
Sbjct: 404 RTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFE 463

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
                D+  + ++I A  Q      A ++F++M  KG+  D F    LL AC   + +  
Sbjct: 464 KHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQ 523

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D+F  N+L+ +Y+KCG   +  A   F  + E+ +VSW++MI GL
Sbjct: 524 GKQVHAHLIKRQFMSDVFAGNALVYTYAKCG--SIEDADLAFSGLPEKGVVSWSAMIGGL 581

Query: 194 VKGGE-----------------------------------LSEARRLFDEMP-----ERD 213
            + G                                    + EA+R F+ M      ER 
Sbjct: 582 AQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERT 641

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              +  ++D   +AG+++ A EL   +P + N   W  ++       D E+ +L    LF
Sbjct: 642 EEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLF 701

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  + A++   M+++ +K +
Sbjct: 702 ILEPEKSGTH-VLLANTYASAGMWDDVAKVRKLMKDSKVKKE 742


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 206/653 (31%), Positives = 325/653 (49%), Gaps = 81/653 (12%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           ++ N  K   L+Q +QLF ++      ++      +IS       +G A K+F+ + +  
Sbjct: 53  RVGNFLKNGELSQARQLFEKMP----HKNTVSTNMMISGYVKSGNLGEARKLFDGMVERT 108

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
              +  LI    Q +   +AF +F+ MQ  G   D  T+  LL  CNG    + +  +  
Sbjct: 109 AVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQT 168

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS-------------- 185
            I K GY   + V N+L+DSY  C    + LA +LF  M E D  +              
Sbjct: 169 QIIKLGYDSRLIVGNTLVDSY--CKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDI 226

Query: 186 ----------------WNSMIAGLV-----KGGELSEARRLFDEMPERDAVSWNTILDGY 224
                           WN  ++  +     K   + +AR+LFDEMPE+D VS+N I+ GY
Sbjct: 227 VLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGY 286

Query: 225 AKAGEMNLAFELFEKIPH-----------------RNIVSW------------------- 248
           A  G+   AF+LF ++                    N + W                   
Sbjct: 287 AWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEI 346

Query: 249 ---STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              +++V  Y+K G  E A+++F  +  ++ VPWT +IS Y +KG  +E  +L+++M +A
Sbjct: 347 LVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQA 406

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            +  D  T  S+L A A    L LG ++H+ I K  F  N    +AL+D+YAKCGS+ +A
Sbjct: 407 SVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDA 466

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
           +  F  M  +++VSWNAM+   A +G+ E  L  F  M   G  PD  +F+GVL AC+H+
Sbjct: 467 VQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHS 526

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +++G+ +F SM + Y + P+ EHY  ++D+L RSGR  EA +L+  MP++P+ I+W +
Sbjct: 527 GLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSS 586

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
           +L ACR H   ELA    D L  ++   D   Y  +SNI+AA G W  V+ V   M+   
Sbjct: 587 VLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRG 646

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            +K    S VE+ +E H FS  D+ HP+ E+I + I+ L K ++ +G+    S
Sbjct: 647 VKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTS 699



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 183/376 (48%), Gaps = 34/376 (9%)

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
            ++V  I A I K G+  D    N  + ++ K G   +S A++LF  M  ++ VS N MI
Sbjct: 28  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNG--ELSQARQLFEKMPHKNTVSTNMMI 85

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIV 246
           +G VK G L EAR+LFD M ER AV+W  ++ GY++  +   AFELF ++       + V
Sbjct: 86  SGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYV 145

Query: 247 SWSTMVWGYS--------KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           ++ T++ G +             ++ KL +D      L+    ++  Y +      A +L
Sbjct: 146 TFVTLLSGCNGHEMGNQITQVQTQIIKLGYD----SRLIVGNTLVDSYCKSNRLDLACQL 201

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGL--LGLGMKVHASINKYRFKCNTNVCNALVDMY 356
           + +M E     D  T  ++L  CA  GL  + LG ++H+ + K  F  N  V NAL+D Y
Sbjct: 202 FKEMPEI----DSFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFY 255

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           +K  S+ +A  +F+ M ++D VS+N ++ G A  G+ + A  LF  ++   F   ++ F 
Sbjct: 256 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 315

Query: 417 GVLCACTHAGFIDKGVQYFYS---MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
            +L   ++    + G Q          D  IL        ++D+  + G+ +EA  +  +
Sbjct: 316 TMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG----NSLVDMYAKCGKFEEAEMIFTN 371

Query: 474 MPVEPNAIIWGTLLGA 489
           +    +A+ W  ++ A
Sbjct: 372 L-THRSAVPWTAMISA 386


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 191/585 (32%), Positives = 312/585 (53%), Gaps = 43/585 (7%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG--VF 112
           L+S+LA  R +     +F  +   D   YN +I        +A+A R++  +   G  V 
Sbjct: 78  LLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVR 137

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
               T   ++ A +      L +  H  I + G+  + FV + L+  Y+K G++G   AK
Sbjct: 138 PSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGD--AK 195

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
           ++F  M  +++V +N+MI GL++   + EARRLF+ M +RD ++W T++ G+ + G  + 
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQ 255

Query: 233 AFELFEKIPHR---------------------------------------NIVSWSTMVW 253
           A   F ++  +                                       N+   S +V 
Sbjct: 256 ALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVD 315

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK   ++ A+  F RM  K ++ WT +I GY + G ++EA R++ +M+  G+ PDD T
Sbjct: 316 MYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFT 375

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L S++++CA    L  G + H             V NALV +Y KCGS+++A  +F+ M 
Sbjct: 376 LGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEML 435

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
             D VSW A++ G A  G+ ++ + LF +M  +   PD  TF+GVL AC+ AGF++KG  
Sbjct: 436 FHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCS 495

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF+SM++D+GI+P  +HY CMIDL  RSGRLKEA   ++ MP+ P+AI WGTLL ACR  
Sbjct: 496 YFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLR 555

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +E+ +   + L+ +   +P +Y +L ++ A  G+WN+VA +R  M+  + +K  G S 
Sbjct: 556 GDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSW 615

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           ++  N+VH FS  DQ HP S+ IY+ +  L   +   G+   +S+
Sbjct: 616 IKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSS 660



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 185/404 (45%), Gaps = 47/404 (11%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI------ 87
           +Q   QI++L    + ++   L+   A    +G A +VF+++   +V +YNT+I      
Sbjct: 160 RQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRC 219

Query: 88  ---------------RACV----------QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
                          R C+          QN L +QA   F  M+ +G+  D +T+  +L
Sbjct: 220 KMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSIL 279

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            AC   +     + IHA I +  Y  ++FV ++L+D YSKC    +  A+  F  M  ++
Sbjct: 280 TACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCR--SIKPAETAFRRMSCKN 337

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA--------- 233
           I+SW ++I G  + G   EA R+F EM +RD +  +    G   +   NLA         
Sbjct: 338 IISWTALIVGYGQNGCSEEAVRVFSEM-QRDGIDPDDFTLGSVISSCANLASLEEGAQFH 396

Query: 234 -FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
              L   + H   VS + +V  Y K G +E A  LFD M     V WT +++GYA+ G A
Sbjct: 397 CLALVSGLMHYITVS-NALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRA 455

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNA 351
           KE   L+++M    +KPD  T I +L+AC+ +G +  G     S+ K +      +    
Sbjct: 456 KETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTC 515

Query: 352 LVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
           ++D+Y++ G L  A      M    D + W  +L    + G  E
Sbjct: 516 MIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDME 559



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/426 (24%), Positives = 188/426 (44%), Gaps = 80/426 (18%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N L+ +Y K G    + A+++F +    ++ ++N++++ L     L +   LF  M +RD
Sbjct: 45  NHLLTAYGKAG--RHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRD 102

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKI--------PHR---------------------- 243
            VS+N ++ G++  G    A  L+  +        P R                      
Sbjct: 103 TVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQF 162

Query: 244 -----------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV--------------- 277
                      N    S +V  Y+K G +  AK +FD M  K +V               
Sbjct: 163 HCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMV 222

Query: 278 ----------------PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
                            WT +++G+ + G+  +A   + +M   G+  D  T  SIL AC
Sbjct: 223 EEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTAC 282

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
                L  G ++HA I +  +  N  V +ALVDMY+KC S+  A + F  M+ K+++SW 
Sbjct: 283 GALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWT 342

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++ G   +G  E+A+ +FS M+ +G  PD +T   V+ +C +   +++G Q F+ +   
Sbjct: 343 ALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLALV 401

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC----RKHNAVE 497
            G++  +     ++ L G+ G +++A RL   M    + + W  L+       R    ++
Sbjct: 402 SGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFH-DQVSWTALVTGYAQFGRAKETID 460

Query: 498 LAEEVL 503
           L E++L
Sbjct: 461 LFEKML 466



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 152/371 (40%), Gaps = 69/371 (18%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N ++    K G  + ARR+FD  P  +  ++N +L   A A  ++    LF  +  R+ V
Sbjct: 45  NHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTV 104

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           S++                                +I+G++  G    A RLY  +  AG
Sbjct: 105 SYNA-------------------------------VIAGFSGGGAHARAVRLYHTLLRAG 133

Query: 307 --LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
             ++P   T+ +++ A +  G   LG + H  I +  F  N  V + LV MYAK G + +
Sbjct: 134 SSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGD 193

Query: 365 AMSVFNG-------------------------------MTKKDLVSWNAMLYGLAMHGQG 393
           A  VF+                                MT +D ++W  M+ G   +G  
Sbjct: 194 AKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLE 253

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYG 452
            +AL  F RM+ +G   D+YTF  +L AC     +++G Q + Y +   Y     V    
Sbjct: 254 SQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYD--DNVFVGS 311

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
            ++D+  +   +K A    + M  + N I W  L+    ++   E A  V   + R  G 
Sbjct: 312 ALVDMYSKCRSIKPAETAFRRMSCK-NIISWTALIVGYGQNGCSEEAVRVFSEMQR-DGI 369

Query: 513 DPGNYTMLSNI 523
           DP ++T+ S I
Sbjct: 370 DPDDFTLGSVI 380



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 134/327 (40%), Gaps = 46/327 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q KQ+ A II+     + ++   L+   + CR +  A   F  +   ++  +  LI  
Sbjct: 288 LEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVG 347

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN  + +A RVF +MQ  G+  D+FT   ++ +C            H L    G    
Sbjct: 348 YGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHY 407

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           I V N+L+  Y KCG   +  A +LF  M   D VSW +++ G  + G   E   LF++M
Sbjct: 408 ITVSNALVTLYGKCG--SIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKM 465

Query: 210 PERDAV----------------------------------------SWNTILDGYAKAGE 229
             +D                                           +  ++D Y+++G 
Sbjct: 466 LAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGR 525

Query: 230 MNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM---PAKTLVPWTIIISG 285
           +  A E  +++P H + + W T++      GDME+ +   + +     +    + ++ S 
Sbjct: 526 LKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSM 585

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           +A KG   + A+L   M +  +K + G
Sbjct: 586 HATKGNWNQVAQLRRGMRDRQVKKEPG 612


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 181/570 (31%), Positives = 315/570 (55%), Gaps = 36/570 (6%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           + +C      +   A +IK  L +D  +  + I++    + + LA+     +Q+P+V +Y
Sbjct: 35  IKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKCLDLAVSTMTQMQEPNVFVY 94

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N L +  V  S   ++  +++ M    V   ++TY  L+KA +  + F   + + A I+K
Sbjct: 95  NALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFASRFG--ESLQAHIWK 152

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+   + +  +LID YS  G +                                  EAR
Sbjct: 153 FGFGFHVKIQTTLIDFYSATGGI---------------------------------REAR 179

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           ++FDEMPERD ++W T++  Y +  +M+ A  L  ++  +N  + + ++ GY   G++E 
Sbjct: 180 KVFDEMPERDDIAWTTMVSAYRRVLDMDSANSLANQMSEKNEATSNCLINGYMGLGNLEQ 239

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LF++MP K ++ WT +I GY++    +EA  ++ +M E G+ PD+ T+ ++++ACA 
Sbjct: 240 AESLFNQMPVKDIISWTTMIKGYSQNKRYREAIAVFYKMMEEGIIPDEVTMSTVISACAH 299

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G+L +G +VH    +  F  +  + +ALVDMY+KCGSL+ A+ VF  + KK+L  WN++
Sbjct: 300 LGVLEIGKEVHMYTLQNGFVLDVYIGSALVDMYSKCGSLERALLVFFNLPKKNLFCWNSI 359

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLA HG  ++AL +F++M+ E   P+  TFV V  ACTHAG +D+G + + SM  DY 
Sbjct: 360 IEGLAAHGFAQEALKMFAKMEMESVKPNAVTFVSVFTACTHAGLVDEGRRIYRSMIDDYS 419

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I+  VEHYG M+ L  ++G + EAL L+ +M  EPNA+IWG LL  CR H  + +AE   
Sbjct: 420 IVSNVEHYGGMVHLFSKAGLIYEALELIGNMEFEPNAVIWGALLDGCRIHKNLVIAEIAF 479

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP-SGASSVEVDNEVHE 562
           + L+ L+  + G Y +L +++A    W  VA +R +M++   +K   G SS+ +D   H 
Sbjct: 480 NKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHL 539

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F+  D+ H  S+++  +++ +   +   G+
Sbjct: 540 FAAADKSHSASDEVCLLLDEIYDQMGLAGY 569


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 186/573 (32%), Positives = 313/573 (54%), Gaps = 11/573 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++N+ +Q+ + +IKL       ++  L+ S    R +GLA ++FNDI + D   +N L+ 
Sbjct: 213 SVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLT 272

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              +   N +A  +F  MQE G     FT+  +L A    +     Q +H  + KC +  
Sbjct: 273 GYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVW 332

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++FV N+L+D YSK     V  A KLF  M E D +S+N ++      G + E+  LF E
Sbjct: 333 NVFVANALLDFYSKHD--RVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKE 390

Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGD 260
           +     +R    + T+L   A +  +++  ++  +    + +S     +++V  Y+K G+
Sbjct: 391 LQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGE 450

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
              A  +F  +  ++ VPWT +IS Y +KG+ ++  +L+ +M+ A +  D  T  SI+ A
Sbjct: 451 FGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRA 510

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA    L LG ++H+ I    +  N    +ALVDMYAKCGS+ +A+ +F  M  ++ VSW
Sbjct: 511 CASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSW 570

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA++   A +G G+  L LF  M   G  PD  + + +LCAC+H G +++G+QYF SM R
Sbjct: 571 NALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTR 630

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y ++P+ EHY   ID+L R GR  EA +L+  MP EP+ I+W ++L +C  H   ELA+
Sbjct: 631 IYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAK 690

Query: 501 EVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +  + L  +K   D   Y  +SNI+AA G+W+ V  V+  M++   +K    S VE+ ++
Sbjct: 691 KAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHK 750

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            H F+  D+ HP+  +I + ++ L + +   G+
Sbjct: 751 THVFTANDKTHPQMREIMKKLDELEEKMVKKGY 783



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/508 (25%), Positives = 234/508 (46%), Gaps = 19/508 (3%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +LN  ++LF ++      ++ +    +I        +  A  +F+ +       +  LI 
Sbjct: 116 DLNGARKLFDEMP----HKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIG 171

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN+   +AF +F++M   G+  D+ +   LL      +  + V+ +H+ + K GY  
Sbjct: 172 GYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDS 231

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            + V NSL+DSY K   +G  LA +LF  + ERD V++N+++ G  K G   EA  LF +
Sbjct: 232 TLVVSNSLLDSYCKTRSLG--LAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFK 289

Query: 209 MPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-----YSKDG 259
           M E        ++  IL    +  ++    ++   +   N V W+  V       YSK  
Sbjct: 290 MQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV-WNVFVANALLDFYSKHD 348

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +  A  LF  MP    + + ++++ YA  G  KE+  L+ +++  G    +    ++L+
Sbjct: 349 RVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLS 408

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
             A S  L +G ++H+            V N+LVDMYAKCG    A  +F+ +  +  V 
Sbjct: 409 IAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVP 468

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W AM+      G  E  L LF  M+    G D  T+  ++ AC     +  G Q  +S  
Sbjct: 469 WTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQ-LHSHI 527

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
              G +  V     ++D+  + G +K+AL++ Q MPV  N++ W  L+ A  ++   +  
Sbjct: 528 IGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVR-NSVSWNALISAYAQNGDGDCT 586

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             + + ++R  G  P + ++LS + A +
Sbjct: 587 LRLFEEMVR-SGLQPDSVSLLSILCACS 613



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 191/392 (48%), Gaps = 43/392 (10%)

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           + A I K G+  + +  N L+ S+ + G   ++ A+KLF  M  ++I S N+MI G +K 
Sbjct: 88  VDASIIKTGFNPNTYRSNFLVKSFLQRG--DLNGARKLFDEMPHKNIFSTNTMIMGYIKS 145

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMV 252
           G LSEAR LFD M +R AV+W  ++ GYA+  +   AF LF ++    I    VS +T++
Sbjct: 146 GNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLL 205

Query: 253 WG-----------------------------------YSKDGDMEMAKLLFDRMPAKTLV 277
            G                                   Y K   + +A  LF+ +P +  V
Sbjct: 206 SGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSV 265

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +  +++GY+++G  +EA  L+ +M+E G +P + T  +IL A  +   +  G +VH  +
Sbjct: 266 TFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFV 325

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  F  N  V NAL+D Y+K   +  A  +F  M + D +S+N ++   A +G+ +++L
Sbjct: 326 VKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESL 385

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF  ++  GF    + F  +L     +  +D G Q  +S       + ++     ++D+
Sbjct: 386 ELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQ-IHSQTIVTDAISEILVGNSLVDM 444

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
             + G   EA R+   + ++ +++ W  ++ +
Sbjct: 445 YAKCGEFGEANRIFSDLAIQ-SSVPWTAMISS 475



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 166/312 (53%), Gaps = 16/312 (5%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N ++  + + G++N A +LF+++PH+NI S +TM+ GY K G++  A+ LFD M  +T V
Sbjct: 105 NFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAV 164

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT++I GYA+    +EA  L+ +M   G+ PD  +L ++L+   E   +    +VH+ +
Sbjct: 165 TWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHV 224

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  +     V N+L+D Y K  SL  A  +FN + ++D V++NA+L G +  G   +A+
Sbjct: 225 IKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAI 284

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF +M++ G+ P ++TF  +L A      I+ G Q  +        +  V     ++D 
Sbjct: 285 NLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFG-QQVHGFVVKCNFVWNVFVANALLDF 343

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC-----RKHNAVELAEEVLDCLIRLKGS 512
             +  R+ EA +L   MP E + I +  L+  C     R   ++EL +E     ++  G 
Sbjct: 344 YSKHDRVVEASKLFYEMP-EVDGISYNVLV-TCYAWNGRVKESLELFKE-----LQFTGF 396

Query: 513 DPGNY---TMLS 521
           D  N+   T+LS
Sbjct: 397 DRRNFPFATLLS 408


>gi|413944078|gb|AFW76727.1| hypothetical protein ZEAMMB73_427029 [Zea mays]
          Length = 794

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 204/631 (32%), Positives = 326/631 (51%), Gaps = 53/631 (8%)

Query: 1   MSAPIRAPTWFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58
           ++ P   P W +   L+     L  L  C +  +  QL A +    L  + + A +L++ 
Sbjct: 13  LAPPSPRPAWNTNCNLVVTHPLLSVLESCASFRRLLQLQALLTVSGLASNRFPASRLLAF 72

Query: 59  LALC---RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115
            AL    R    A  +    + P+ ++  T++R  ++      A  +F  +    +  D 
Sbjct: 73  CALSDPPRLAHAAAVLAQCTEGPNAYMLATMMRGFLRAGKPTHALTLFRRVLRDRLAVDA 132

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKL 174
            T  F +KA    +     + IH + +K G+ G  +   N+L+  Y+   ++    A+KL
Sbjct: 133 RTIVFAVKAAATSS--SPTEAIHCVAFKRGFIGQSVLAGNALVHMYTSSMLL--PDARKL 188

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW----------------- 217
           F  M +RD+VSW ++I G  +GG   EA R+F  M   ++V W                 
Sbjct: 189 FDEMADRDVVSWTTLIDGYARGGLPDEAWRVFCRMVVAESV-WPNEVTLVAAASAAGQMG 247

Query: 218 ------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
                                   N ++D + K G +  A E+F+ +P +++ SW++MV 
Sbjct: 248 LLGLGRTVHQCIVESGGRMSVNLENALVDMFGKCGCVAAAKEVFDGMPIKDVYSWTSMVS 307

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y+K GD+E A  LF  +P + +V W+ +++ Y+   M  EA R+++ M  AG++P D T
Sbjct: 308 AYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYSHANMPDEAIRIFNDMIAAGVEPIDAT 367

Query: 314 LISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           L+S+L+ACA+   L +G  ++ + I  ++ +   N+ NA +DM+AKCG +  A  +F+ M
Sbjct: 368 LVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTPNLSNAFIDMFAKCGDVGAASRLFSNM 427

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K++VSWN M+    +HGQ E+AL LF   K  G  PD+ T++GVL AC+H G + +G 
Sbjct: 428 EDKNVVSWNTMIMAHGLHGQPEEALHLFQEFKGNGILPDEATYIGVLSACSHGGLVSEGR 487

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
            +F  M+  YGI P+ EHY CMIDLLG+ G L+EA  + +SMPV  +   WG LL ACR 
Sbjct: 488 CHFKEMKIVYGIEPRAEHYACMIDLLGKVGLLQEAFEVARSMPVGADEAGWGALLNACRM 547

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  VE+ +   D L  L  SD G Y ++S I+A+   W +V  +R  M+  R +K  G S
Sbjct: 548 HGNVEIGKCAADKLAGLDPSDSGIYVLMSQIYASKSKWGQVKMLRTVMRDRRVKKNPGCS 607

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           S+EVD + HEF V D  H  SE IY  +  +
Sbjct: 608 SIEVDGKCHEFLVADVSHVHSEDIYAALGNI 638



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 188/441 (42%), Gaps = 70/441 (15%)

Query: 188 SMIAGLVKGGELSEARRLFDE-MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--- 243
           +M+ G ++ G+ + A  LF   + +R AV   TI+     A   +   E    +  +   
Sbjct: 102 TMMRGFLRAGKPTHALTLFRRVLRDRLAVDARTIVFAVKAAATSSSPTEAIHCVAFKRGF 161

Query: 244 ---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
              ++++ + +V  Y+    +  A+ LFD M  + +V WT +I GYA  G+  EA R++ 
Sbjct: 162 IGQSVLAGNALVHMYTSSMLLPDARKLFDEMADRDVVSWTTLIDGYARGGLPDEAWRVFC 221

Query: 301 QMEEA-GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           +M  A  + P++ TL++  +A  + GLLGLG  VH  I +   + + N+ NALVDM+ KC
Sbjct: 222 RMVVAESVWPNEVTLVAAASAAGQMGLLGLGRTVHQCIVESGGRMSVNLENALVDMFGKC 281

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF------------------- 400
           G +  A  VF+GM  KD+ SW +M+   A  G  E A  LF                   
Sbjct: 282 GCVAAAKEVFDGMPIKDVYSWTSMVSAYAKCGDLENAAKLFKEIPNRNVVSWSCMVAAYS 341

Query: 401 -SRMKDE-----------GFGPDKYTFVGVLCACTHAGFIDKGVQYF--YSMERDYGILP 446
            + M DE           G  P   T V VL AC     +D G   +  Y +     + P
Sbjct: 342 HANMPDEAIRIFNDMIAAGVEPIDATLVSVLSACAQLCSLDVGTWLYDTYIVSHKVELTP 401

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            + +    ID+  + G +  A RL  +M  + N + W T++ A   H      EE L   
Sbjct: 402 NLSN--AFIDMFAKCGDVGAASRLFSNME-DKNVVSWNTMIMA---HGLHGQPEEALHLF 455

Query: 507 IRLKGSD--PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
              KG+   P   T +  + +A      V+  R   K                    E  
Sbjct: 456 QEFKGNGILPDEATYI-GVLSACSHGGLVSEGRCHFK--------------------EMK 494

Query: 565 VCDQLHPKSEQIYQMINTLGK 585
           +   + P++E    MI+ LGK
Sbjct: 495 IVYGIEPRAEHYACMIDLLGK 515


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 166/409 (40%), Positives = 260/409 (63%), Gaps = 3/409 (0%)

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G L  +  LF          W  I+ G+A  G++  A +LF+ +P +++VS + M+  Y+
Sbjct: 76  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTAMLTCYA 135

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K G+++ A++LFD M  +  V W ++I GY + GM  EA  L+ +M +A  KP++ T++S
Sbjct: 136 KHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS 195

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L+AC + G L  G  VH+ I     + N +V  ALVDMY+KCGSL++A  VF+ +  KD
Sbjct: 196 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 255

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +V+WN+M+ G AMHG  ++AL LF  M   G  P   TF+G+L AC H+G++ +G   F 
Sbjct: 256 VVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFN 315

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M+ +YGI P++EHYGCM++LLGR+G +++A  LV++M +EP+ ++WGTLLGACR H  +
Sbjct: 316 KMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKI 375

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
            L E++++ L+    ++ G Y +LSNI+AA G+W+ VA +R  MK +  +K  G SS+EV
Sbjct: 376 ALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEV 435

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA---EIGE 602
           +N+VHEF      HPK ++IY M+  +   LK  G+  +      +IGE
Sbjct: 436 NNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGE 484



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 125/302 (41%), Gaps = 46/302 (15%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ +++ D   +N +I    QN +  +A  +F  M +     +  T   +L AC     
Sbjct: 146 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 205

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
               + +H+ I   G   ++ V  +L+D YSKCG   +  A+ +F  + ++D+V+WNSMI
Sbjct: 206 LESGRWVHSYIENNGIQFNVHVGTALVDMYSKCG--SLEDARLVFDKIDDKDVVAWNSMI 263

Query: 191 AGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
            G    G   EA +LF  M         +++  IL     +G +   +++F K+      
Sbjct: 264 VGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDE--- 320

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
                   Y  +  +E    + + +                  G A    + Y+ ++   
Sbjct: 321 --------YGIEPKIEHYGCMVNLL------------------GRAGHVEQAYELVKNMN 354

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA-----LVDMYAKCGS 361
           ++PD     ++L AC   G + LG K+           + N+ N+     L ++YA  G+
Sbjct: 355 IEPDPVLWGTLLGACRLHGKIALGEKI------VELLVDQNLANSGTYILLSNIYAAVGN 408

Query: 362 LD 363
            D
Sbjct: 409 WD 410



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 104/269 (38%), Gaps = 61/269 (22%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           +Q + ++   L+   + C  +  A  VF+ I D DV  +N++I     +  + +A ++F 
Sbjct: 221 IQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 280

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
            M   G+   N T+  +L AC    W              G+  DIF  N + D Y   G
Sbjct: 281 SMCRMGLHPTNITFIGILSACGHSGWV-----------TEGW--DIF--NKMKDEY---G 322

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILDG 223
           +              E  I  +  M+  L + G + +A  L   M  E D V W T+L  
Sbjct: 323 I--------------EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGA 368

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
               G++ L  ++ E +  +N+ +  T +                            ++ 
Sbjct: 369 CRLHGKIALGEKIVELLVDQNLANSGTYI----------------------------LLS 400

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           + YA  G     ARL   M+++G+K + G
Sbjct: 401 NIYAAVGNWDGVARLRTMMKDSGVKKEPG 429


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 192/568 (33%), Positives = 309/568 (54%), Gaps = 11/568 (1%)

Query: 34   KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
            KQ+   +++  L +   +   LI+       +  A  VF  + + D+  +NT+I  C  +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 94   SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFV 152
             L   +  +F+D+   G+  D FT   +L+AC+      HL   IHA   K G   D FV
Sbjct: 986  GLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFV 1045

Query: 153  PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              +LID YSK G   +  A+ LF++    D+ SWN+M+ G +  G+  +A RL+  M E 
Sbjct: 1046 STTLIDVYSKSG--KMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQES 1103

Query: 213  DAVSWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMVWGYSKDGDMEMA 264
               +    L   AKA    +  +  ++I         + ++   S ++  Y K G+ME A
Sbjct: 1104 GERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESA 1163

Query: 265  KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            + +F+ +P+   V WT +ISG  E G  + A   Y  M  + ++PD+ T  +++ AC+  
Sbjct: 1164 RRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLL 1223

Query: 325  GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
              L  G ++HA+  K     +  V  +LVDMYAKCG++++A  +F       + SWNAM+
Sbjct: 1224 TALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMI 1283

Query: 385  YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
             GLA HG  E+AL  F  MK  G  PD+ TF+GVL AC+H+G + +  + FYSM++ YGI
Sbjct: 1284 VGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGI 1343

Query: 445  LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
             P++EHY C++D L R+GR++EA +++ SMP E +A ++ TLL ACR     E  + V +
Sbjct: 1344 EPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAE 1403

Query: 505  CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
             L+ L+ SD   Y +LSN++AA   W  VA+ R  M+K   +K  G S V++ N+VH F 
Sbjct: 1404 KLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFV 1463

Query: 565  VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
              D+ H +++ IY  +  + K ++  G+
Sbjct: 1464 AGDRSHEETDVIYNKVEYIMKRIREEGY 1491



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 136/497 (27%), Positives = 220/497 (44%), Gaps = 52/497 (10%)

Query: 79   DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            DV  +N  +   +Q     +A   F+DM    V  D  T+  +L    G N   L + IH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 139  ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG- 197
             ++ + G    + V N LI+ Y K G   VS A+ +F  M E D+VSWN+MI+G    G 
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTG--SVSRARTVFWQMNEVDLVSWNTMISGCALSGL 987

Query: 198  ---------ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
                     +L     L D+      +   + L G         A  +   +   + VS 
Sbjct: 988  EECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVS- 1046

Query: 249  STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
            +T++  YSK G ME A+ LF       L  W  ++ GY   G   +A RLY  M+E+G +
Sbjct: 1047 TTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGER 1106

Query: 309  PDDGTLISILAACAESGLLGL--GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
             +  TL +  AA A  GL+GL  G ++ A + K  F  +  V + ++DMY KCG +++A 
Sbjct: 1107 ANQITLAN--AAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESAR 1164

Query: 367  SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
             +FN +   D V+W  M+ G   +GQ E AL  +  M+     PD+YTF  ++ AC+   
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLT 1224

Query: 427  FIDKGVQYFY-------------------------SMERDYGIL-----PQVEHYGCMID 456
             +++G Q                            ++E   G+       ++  +  MI 
Sbjct: 1225 ALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIV 1284

Query: 457  LLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
             L + G  +EAL+  + M    V P+ + +  +L AC     V  A E    + ++ G +
Sbjct: 1285 GLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIE 1344

Query: 514  P--GNYTMLSNIFAATG 528
            P   +Y+ L +  +  G
Sbjct: 1345 PEIEHYSCLVDALSRAG 1361



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 204/466 (43%), Gaps = 36/466 (7%)

Query: 8    PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
            P WFS        L++     +L   K+  A+I+      D ++   LI+  + C  +  
Sbjct: 627  PQWFSI-------LRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSS 679

Query: 68   AIKVFNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
            A K+F+   D   D+  +N ++ A    + +   F +F  ++   V     T   + K C
Sbjct: 680  ARKLFDTTPDTSRDLVTWNAILSAHADKARDG--FHLFRLLRRSFVSATRHTLAPVFKMC 737

Query: 126  NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
                     + +H    K G   D+FV  +L++ Y+K G   +  A+ LF  MG RD+V 
Sbjct: 738  LLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFG--RIREARVLFDGMGLRDVVL 795

Query: 186  WNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIP 241
            WN M+   V  G   EA  LF E        D V+  T L    K+ +  L ++L     
Sbjct: 796  WNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCT-LARVVKSKQNVLEWQL----- 849

Query: 242  HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             + + ++ T ++ Y                    ++ W   +S + ++G   EA   +  
Sbjct: 850  -KQLKAYGTKLFMYDD------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVD 896

Query: 302  MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
            M  + +  D  T + +L+  A    L LG ++H  + +       +V N L++MY K GS
Sbjct: 897  MINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGS 956

Query: 362  LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
            +  A +VF  M + DLVSWN M+ G A+ G  E ++G+F  +   G  PD++T   VL A
Sbjct: 957  VSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRA 1016

Query: 422  CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
            C+  G         ++     G++        +ID+  +SG+++EA
Sbjct: 1017 CSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEA 1062



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/252 (30%), Positives = 120/252 (47%), Gaps = 11/252 (4%)

Query: 30   LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            L Q KQ+ A ++K     D ++   ++     C +M  A ++FN+I  PD   + T+I  
Sbjct: 1125 LKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISG 1184

Query: 90   CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            CV+N     A   +  M+   V  D +T+  L+KAC+        + IHA   K     D
Sbjct: 1185 CVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFD 1244

Query: 150  IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             FV  SL+D Y+KCG   +  A+ LF       I SWN+MI GL + G   EA + F+EM
Sbjct: 1245 PFVMTSLVDMYAKCG--NIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEM 1302

Query: 210  PER----DAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGD 260
              R    D V++  +L   + +G ++ A+E F  +         I  +S +V   S+ G 
Sbjct: 1303 KSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGR 1362

Query: 261  MEMAKLLFDRMP 272
            +  A+ +   MP
Sbjct: 1363 IREAEKVISSMP 1374


>gi|147826737|emb|CAN70653.1| hypothetical protein VITISV_010023 [Vitis vinifera]
          Length = 1301

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 187/544 (34%), Positives = 305/544 (56%), Gaps = 12/544 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q     IKL   +D Y     I +LA    +G A +VF+++   D   +N++I    +N
Sbjct: 32  RQFHPLSIKLFSTQDVYAFNVQIGNLARAGNIGAARQVFDEMPHRDTVSWNSIITGYWKN 91

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIFV 152
               ++ R+F  M  K V +    +  ++  C   +      Q   A+  +     +  +
Sbjct: 92  GCFDESKRLFGLMPTKNVVS----WNSMIAGCIEDERIDEAWQYFQAMPQRNTASWNAMI 147

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
             S +  Y +     V  A +LF  M  R+++S+ +M+ G  K GE+ +AR LF+ MP++
Sbjct: 148 --SGLVRYDR-----VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQK 200

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + VSW  ++ GY + G+ + A  LFE++P +NIV+ + M+ GY K+G  + AK+LFD++P
Sbjct: 201 NVVSWTVMISGYVENGKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIP 260

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            + L  W  +I+GYA+ G  +EA +L+ QM + G++PD  TLIS+L AC+    L  G K
Sbjct: 261 CRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRK 320

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
            H  + K  ++   ++CNAL+ MY KCGS+ ++   F  +   D+VSWNAM+   A HG 
Sbjct: 321 THVLVLKSGYESRISICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGF 380

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            ++AL  F  M+     PD  TF+ +L AC HAG + + + +F SM   Y I+ + EH+ 
Sbjct: 381 YDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIXSYKIVXRPEHFA 440

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           C++D+L R G++++A +++Q MP E +  IWG LL AC  H  V+L E     ++ L+  
Sbjct: 441 CLVDILSRGGQVEKAYKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQ 500

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           + G Y +LSNI+AA G W +V  VR  M++   +K    S +E+DN+VH F   D  HP+
Sbjct: 501 NSGAYVVLSNIYAAAGMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPE 560

Query: 573 SEQI 576
             +I
Sbjct: 561 IHRI 564


>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Glycine max]
          Length = 595

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 207/595 (34%), Positives = 315/595 (52%), Gaps = 30/595 (5%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  +HKC +L   KQ+ A ++   L  +  +  K  + L          K   D+  P  
Sbjct: 13  LDLIHKCNDLRSFKQIHAHLLTSALVTNDLVVTKAANFLG---------KHITDVHYPCN 63

Query: 81  HLY-----------NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            L            N LI       L   A  ++      G   D +T+P +LK+C   +
Sbjct: 64  FLKQFDWSLSSFPCNLLISGYASGQLPWLAILIYRWTVRNGFVPDVYTFPAVLKSCAKFS 123

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG-VVGVSLAKKLFMSMGERDIVSWNS 188
               V+  H++  K G + DI+V N+L+  YS CG  VG   A K+F  M  RD+VSW  
Sbjct: 124 GIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVG---AGKVFEDMLVRDVVSWTG 180

Query: 189 MIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHR 243
           +I+G VK G  +EA  LF  M  E +  ++ +IL    K G +NL   +    F+ +   
Sbjct: 181 LISGYVKTGLFNEAISLFLRMNVEPNVGTFVSILGACGKLGRLNLGKGIHGLVFKCLYGE 240

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
            +V  + ++  Y K   +  A+ +FD MP K ++ WT +I G  +    +E+  L+ QM+
Sbjct: 241 ELVVCNAVLDMYMKCDSVTDARKMFDEMPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQ 300

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
            +G +PD   L S+L+ACA  GLL  G  VH  I+ +R K + ++   LVDMYAKCG +D
Sbjct: 301 ASGFEPDGVILTSVLSACASLGLLDCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCID 360

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
            A  +FNGM  K++ +WNA + GLA++G G++AL  F  + + G  P++ TF+ V  AC 
Sbjct: 361 MAQRIFNGMPSKNIRTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACC 420

Query: 424 HAGFIDKGVQYFYSMERD-YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           H G +D+G +YF  M    Y + P +EHYGCM+DLL R+G + EA+ L+++MP+ P+  I
Sbjct: 421 HNGLVDEGRKYFNEMTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMPMPPDVQI 480

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
            G LL +   +  V   +E+L  L  ++  D G Y +LSN++A    W +V +VR  MK+
Sbjct: 481 LGALLSSRNTYGNVGFTQEMLKSLPNVEFQDSGIYVLLSNLYATNKKWAEVRSVRRLMKQ 540

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
               K  G+S + VD   HEF V D  HP+SE+IY ++N L   +   GH   LS
Sbjct: 541 KGISKAPGSSIIRVDGMSHEFLVGDNSHPQSEEIYVLLNILANQIYLEGHINTLS 595


>gi|359497527|ref|XP_003635554.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
 gi|296083555|emb|CBI23551.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 200/580 (34%), Positives = 321/580 (55%), Gaps = 44/580 (7%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQR-DPYIAPK-LISSLALCRQMGLAI-KV 71
           R L  KL  +    ++ Q KQ+ A I+   L   +P +A + L+S+      +   +  V
Sbjct: 4   RCLFSKLSTI--SLSVKQAKQVHALILIHGLSHLEPILARQILLSASNYSATVAQYVHSV 61

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
            +  + PD   +   IR   Q+    +AF +++ MQ  G++   F     LKAC    + 
Sbjct: 62  LHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYR 121

Query: 132 HLVQMIHALIYKCGYFGD---IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER------- 181
                IH  + K G+ G    I+V  +L+D Y K G   + +A+K+F  M ER       
Sbjct: 122 MGGLSIHGQVQKFGFSGGGDGIYVETALVDFYCKLG--DMEIARKMFDEMAERNVVSWNS 179

Query: 182 ------------------------DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
                                   D++SWNSMI+G  + G++ +A  LF +MPER+  SW
Sbjct: 180 MLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASW 239

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N ++ GY + G+++ A   F+ +P RN VSW TM+ GYSK GD++ A  LFD++  K L+
Sbjct: 240 NAMISGYVEFGDIDSARSFFDAMPQRNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLL 299

Query: 278 PWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
            +  +I+ YA+    KEA +L++ M   +  ++PD+ TL S+++AC++ G L  G  + +
Sbjct: 300 LFNAMIACYAQNSRPKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIES 359

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            + +   + + ++  AL+D+YAKCGS+D A  +F+G+ KKDLV++ AM+ G  ++G+   
Sbjct: 360 YMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAID 419

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           A+ LF  M D    P+  TF+G+L A  HAG +++G   F SM++ Y ++P V+HYG M+
Sbjct: 420 AIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYHCFTSMKK-YNLVPSVDHYGIMV 478

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DL GR+GRL+EAL L++SMP++P+A +WG LL ACR HN VE  E        L+    G
Sbjct: 479 DLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTG 538

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
             ++LSNI+A+   W+ V  +R   K+    K  G S +E
Sbjct: 539 YCSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWME 578


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 188/581 (32%), Positives = 318/581 (54%), Gaps = 9/581 (1%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  + + +++F  +++    R+  +   ++     C  M  A+ VF  +   DV  + TL
Sbjct: 186 CFEIGEARRVFDVLVR----RNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTL 241

Query: 87  IRACVQNSLN-AQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           I    +N     +A  +F  M   G  T N FT+  +++AC       + + +H L+ KC
Sbjct: 242 ISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKC 301

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   D  +  +L++ Y +C  +  +L  ++   +    + + NS+I GL+  G + +A  
Sbjct: 302 GLEYDPSIGGALVEFYCECEAIDDAL--RVCKGVVNPCLNALNSLIEGLISMGRIEDAEL 359

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           +F+ M E + VS+N ++ GYA  G+M+ +  LFEK+P R I S +TM+  YS++G+++ A
Sbjct: 360 VFNGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKA 419

Query: 265 KLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
             LF+     K  V W  +ISGY   G  +EA +LY  M    ++    T  ++  AC+ 
Sbjct: 420 LELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSC 479

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L  G  +HA + K  F+ N  V  +L+DMY+KCGS+  A + F  +   ++ +W A+
Sbjct: 480 LGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTAL 539

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G A HG G +A+ LF  M ++G  P+  TFVGVL AC+ AG +++G++ F+SMER Y 
Sbjct: 540 INGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYS 599

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           + P +EHY C++DLLGRSG ++EA   ++ MP+E + ++WG LL AC     +E+ E V 
Sbjct: 600 VTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFWMDLEVGERVA 659

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + +         +Y +LSNI+A  G W +   VR  ++  + +K  G S +E++N++H F
Sbjct: 660 EKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSWIELNNKIHVF 719

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEGV 604
           S+ D+ HP    IY  +  L  ++  V H   +S  I + V
Sbjct: 720 SIEDRSHPYCNMIYATLEHLTANINSVVHFDHVSIPITQAV 760



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 179/411 (43%), Gaps = 57/411 (13%)

Query: 121 LLKACNGKNWFH-LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           L+KA   K W H  ++             +I   N  I +Y+K   + V  A++LF  M 
Sbjct: 42  LIKASISKAWKHQRLKEFKLYTAHQSNLSEIISTNIAISNYAKQSKLDV--ARQLFDQMP 99

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL----------DG-- 223
           +R +VSWN+MI+   K G  SEA  L   M          +++++L          DG  
Sbjct: 100 QRTVVSWNTMISSYSKHGRFSEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKL 159

Query: 224 -----------------------YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                                  YA   E+  A  +F+ +  RN V WS M+ GY     
Sbjct: 160 IHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNV 219

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEK----GMAKEAARLYDQMEEAGLKPDDGTLIS 316
           M+ A  +F +MP + +V WT +ISG+++     G A E  RL   M      P++ T   
Sbjct: 220 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRL--MMRSGETTPNEFTFDC 277

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           ++ AC   G+L +G  VH  + K   + + ++  ALV+ Y +C ++D+A+ V  G+    
Sbjct: 278 VVRACGRLGILSVGRTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGVVNPC 337

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L + N+++ GL   G+ E A  +F+ M +    P  Y    ++      G +D   + F 
Sbjct: 338 LNALNSLIEGLISMGRIEDAELVFNGMTE--MNPVSYNL--MIKGYAVGGQMDDSKRLFE 393

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
            M         +     MI +  R+G + +AL L +    E + + W +++
Sbjct: 394 KMP-----CRTIFSSNTMISVYSRNGEIDKALELFEETKNEKDPVTWNSMI 439



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/350 (23%), Positives = 145/350 (41%), Gaps = 69/350 (19%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + +S N  +  YAK  ++++A +LF+++P R +VSW+TM+  YSK G             
Sbjct: 71  EIISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRF----------- 119

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
                                EA  L   M  + +K  + T  S+L+ CA    L  G  
Sbjct: 120 --------------------SEALFLVYSMHRSHMKLSESTFSSVLSVCARLRCLRDGKL 159

Query: 333 VHASINKYRFKCNTNVCNALVDMYAK-------------------------------CGS 361
           +H  + K   +    V +AL+  YA                                C  
Sbjct: 160 IHCLVLKSGSESFELVGSALLYFYASCFEIGEARRVFDVLVRRNEVLWSLMLVGYVTCNV 219

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG-EKALGLFSRMKDEG-FGPDKYTFVGVL 419
           +D+A+SVF  M ++D+V+W  ++ G + +G G  KAL +F  M   G   P+++TF  V+
Sbjct: 220 MDDALSVFVKMPRRDVVAWTTLISGFSKNGDGCGKALEMFRLMMRSGETTPNEFTFDCVV 279

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC   G +  G +  + +    G+       G +++       + +ALR+ + + V P 
Sbjct: 280 RACGRLGILSVG-RTVHGLLMKCGLEYDPSIGGALVEFYCECEAIDDALRVCKGV-VNPC 337

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
                +L+        +E AE V + +  +   +P +Y ++   +A  G 
Sbjct: 338 LNALNSLIEGLISMGRIEDAELVFNGMTEM---NPVSYNLMIKGYAVGGQ 384


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 190/517 (36%), Positives = 283/517 (54%), Gaps = 24/517 (4%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +NT +R   +     QA  ++  M   G   + FT+PF LK+C   +   L    H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS--MGERDIVSWNSMIAGLVKGGELS 200
           K G   + FV   LI  Y K  +V    A+K+F       +  V +N++++G V   + S
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLV--DNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 125

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD-- 258
           +A  LF +M E      +  L G   A    +  EL   +        ST+ +G+  D  
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSL------HCSTLKYGFDSDVS 179

Query: 259 ------------GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
                       G +  A+ LFD MP K L+ W  ++SGYA+ G+A     LY  M+  G
Sbjct: 180 VVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNG 239

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           + PD  TL+ +L++CA  G   +G +V   +    F  N  + NAL++MYA+CG+L  A 
Sbjct: 240 VHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQ 299

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           +VF+GM ++ LVSW A++ G  MHG GE A+ LF  M   G  PD   FV VL AC+HAG
Sbjct: 300 AVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAG 359

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
             D+G++YF  M+R+Y + P  EHY CM+DLLGR+GRLKEA  L++SMP++P+  +WG L
Sbjct: 360 LTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGAL 419

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGAC+ H  VELAE   + +I L+  + G Y +LSNI++   +   V  +R+ MK+ + +
Sbjct: 420 LGACKIHKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLK 479

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           K  G S VE+   VH F V D+ H +S++IY+++  L
Sbjct: 480 KDPGCSYVELKGRVHPFIVGDRNHLQSDEIYRVLEEL 516



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 95/213 (44%), Gaps = 4/213 (1%)

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
            PW   +   A++    +A  LY QM   G +P+  T    L +CA   L  LG + H  
Sbjct: 6   TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQ 65

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF--NGMTKKDLVSWNAMLYGLAMHGQGE 394
           I K        V   L+ MY K   +DNA  VF  N  ++K  V +NA++ G   + +  
Sbjct: 66  ITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCS 125

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
            A+ LF +M +EG   +  T +G++ AC     ++ G     S  + YG    V    C 
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLK-YGFDSDVSVVNCF 184

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           I +  + G +  A +L   MPV+   I W  ++
Sbjct: 185 ITMYMKCGSVNYAQKLFDEMPVK-GLISWNAMV 216



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 111/256 (43%), Gaps = 13/256 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL     L    +K     D  +    I+    C  +  A K+F+++    +  +N ++ 
Sbjct: 158 NLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVS 217

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN L      ++ +M   GV  D  T   +L +C       +   +   +   G+  
Sbjct: 218 GYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTS 277

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + F+ N+LI+ Y++CG   ++ A+ +F  M ER +VSW ++I G    G    A +LF E
Sbjct: 278 NPFLNNALINMYARCG--NLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLFKE 335

Query: 209 M----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV------SWSTMVWGYSKD 258
           M     E D  ++  +L   + AG  +   E F K+  RN         +S MV    + 
Sbjct: 336 MIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYF-KMMKRNYQLEPGPEHYSCMVDLLGRA 394

Query: 259 GDMEMAKLLFDRMPAK 274
           G ++ A+ L + MP K
Sbjct: 395 GRLKEAQTLIESMPIK 410


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 315/589 (53%), Gaps = 29/589 (4%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  L +    K +   + K  +  D ++   LI   + C QM  A+KVF +    DV
Sbjct: 112 LKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDV 171

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            L+ ++I    QN     A   F  M   + V  D  T      AC   + F+L + +H 
Sbjct: 172 VLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHG 231

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + + G+   + + NS+++ Y K G   +  A  LF  M  +DI+SW+SM+A     G  
Sbjct: 232 FVKRRGFDTKLCLANSILNLYGKTG--SIRSAANLFREMPYKDIISWSSMVACYADNGAE 289

Query: 200 SEARRLFDEMPER----DAVSWNTILDGYAKAGEM-----------NLAFELFEKIPHRN 244
           + A  LF+EM ++    + V+  + L   A +  +           N  FEL       +
Sbjct: 290 TNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFEL-------D 342

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           I   + ++  Y K    + A  LF+RMP K +V W ++ SGYAE GMA ++  ++  M  
Sbjct: 343 ITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLS 402

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G +PD   L+ ILAA +E G++   + +HA ++K  F  N  +  +L+++YAKC S+DN
Sbjct: 403 YGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFIGASLIELYAKCSSIDN 462

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACT 423
           A  VF GM +KD+V+W++++     HGQGE+AL LF +M +     P+  TFV +L AC+
Sbjct: 463 ANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACS 522

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
           HAG I++G++ F+ M  +Y ++P  EHYG M+DLLGR G L +AL ++  MP++    +W
Sbjct: 523 HAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHVW 582

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543
           G LLGACR H  +++ E     L  L  +  G YT+LSNI+    +W+  A +R  +K+ 
Sbjct: 583 GALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKEN 642

Query: 544 RAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           R +K  G S VE+ NEVH F   D+ H +S+QIY M+  L   +K  G+
Sbjct: 643 RFKKIVGQSMVEIKNEVHSFIASDRFHGESDQIYGMLRKLDARMKEEGY 691



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 164/612 (26%), Positives = 255/612 (41%), Gaps = 124/612 (20%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           KRR L  KL  L  C +     QL +Q +K+ L  D ++  KL    A    +  A K+F
Sbjct: 2   KRRDLLVKL--LETCCSKISIPQLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLF 59

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT---DNFTYPFLLKACNGKN 129
            +     V+L+N L+R+        +   +F  M    +     DN+T    LK+C+G  
Sbjct: 60  EETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQ 119

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L +MIH  + K     D+FV ++LI+ YSKCG   ++ A K+F    ++D+V W S+
Sbjct: 120 KLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCG--QMNDAVKVFTEYPKQDVVLWTSI 177

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVS--------------------------------- 216
           I G  + G    A   F  M   + VS                                 
Sbjct: 178 ITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRG 237

Query: 217 -------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
                   N+IL+ Y K G +  A  LF ++P+++I+SWS+MV                 
Sbjct: 238 FDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMV----------------- 280

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
                         + YA+ G    A  L+++M +  ++ +  T+IS L ACA S  L  
Sbjct: 281 --------------ACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEE 326

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G  +H     Y F+ +  V  AL+DMY KC S  NA+ +FN M KKD+VSW  +  G A 
Sbjct: 327 GKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAE 386

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-----------CTHA-----GF------ 427
            G   K+LG+F  M   G  PD    V +L A           C HA     GF      
Sbjct: 387 IGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEFI 446

Query: 428 -------------IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
                        ID   + F  M R       V  +  +I   G  G+ +EAL+L   M
Sbjct: 447 GASLIELYAKCSSIDNANKVFKGMRR-----KDVVTWSSIIAAYGFHGQGEEALKLFYQM 501

Query: 475 P----VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATG 528
                V+PN + + ++L AC     +E   ++   ++      P   +Y ++ ++    G
Sbjct: 502 SNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMG 561

Query: 529 DWNKVANVRLQM 540
           + +K  ++  +M
Sbjct: 562 ELDKALDMINEM 573


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 311/567 (54%), Gaps = 10/567 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K+  AQ+IK+    D  I   L+S       M  A +VF+ +   DV  +N +I    ++
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +AF++F  MQ++G   +  ++  +L  C+        + +HA     G   D+ V 
Sbjct: 242 GDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA 301

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
            +LI  Y  CG   +  A+++F  M  RD+VSW  MI G  +   + +A  LF  M E  
Sbjct: 302 TALIRMYMGCG--SIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAK 265
              D +++  I++  A + +++LA E+  ++       +++  + +V  Y+K G ++ A+
Sbjct: 360 IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDAR 419

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD M  + +V W+ +I  Y E G  +EA   +  M+   ++PD  T I++L AC   G
Sbjct: 420 QVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLG 479

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L LGM+++    K     +  V NAL++M  K GS++ A  +F  M ++D+V+WN M+ 
Sbjct: 480 ALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIG 539

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G ++HG   +AL LF RM  E F P+  TFVGVL AC+ AGF+++G ++F  +    GI+
Sbjct: 540 GYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIV 599

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P +E YGCM+DLLGR+G L EA  L+  MP++PN+ IW TLL ACR +  +++AE   + 
Sbjct: 600 PTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAER 659

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
            +  +  D   Y  LS+++AA G W  VA VR  M+    +K  G + +EV+ ++H F V
Sbjct: 660 CLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVV 719

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D+ HP++ +IY  +  L   +K  G+
Sbjct: 720 EDRSHPQAGEIYAELARLMTAIKREGY 746



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 138/484 (28%), Positives = 248/484 (51%), Gaps = 15/484 (3%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+   II+   Q + Y    LI   ++C  M  A + F+ +++  V  +N +I    Q 
Sbjct: 81  KQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQL 140

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +AF +F  M ++ +     T+  +L AC+      L +  HA + K G+  D  + 
Sbjct: 141 GHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIG 200

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
            +L+  Y K G   +  A+++F  + +RD+ ++N MI G  K G+  +A +LF  M +  
Sbjct: 201 TALVSMYVKGG--SMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAK 265
              + +S+ +ILDG +    +     +  +  +  +V      + ++  Y   G +E A+
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGAR 318

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD+M  + +V WT++I GYAE    ++A  L+  M+E G++PD  T I I+ ACA S 
Sbjct: 319 RVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSA 378

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L L  ++H+ + +  F  +  V  ALV MYAKCG++ +A  VF+ M+++D+VSW+AM+ 
Sbjct: 379 DLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIG 438

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
               +G GE+A   F  MK     PD  T++ +L AC H G +D G++  Y+      ++
Sbjct: 439 AYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGME-IYTQAIKADLV 497

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
             +     +I++  + G ++ A  + ++M V+ + + W  ++G    H     A E LD 
Sbjct: 498 SHIPVGNALINMNVKHGSIERARYIFENM-VQRDVVTWNVMIGGYSLHGN---AREALDL 553

Query: 506 LIRL 509
             R+
Sbjct: 554 FDRM 557



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 213/432 (49%), Gaps = 32/432 (7%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D+ TY  L + C       L + +   I + G   +I+  N+LI  +S CG   +  A++
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICG--NMLEARQ 117

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEA----RRLFDEMPERDAVSWNTILDGYAKAGE 229
            F S+  + +V+WN++IAG  + G + EA    R++ DE  E   +++  +LD  +    
Sbjct: 118 TFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAG 177

Query: 230 MNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           + L  E   ++     VS     + +V  Y K G M+ A+ +FD +  + +  + ++I G
Sbjct: 178 LKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGG 237

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           YA+ G  ++A +L+ +M++ G KP+  + +SIL  C+    L  G  VHA         +
Sbjct: 238 YAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDD 297

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V  AL+ MY  CGS++ A  VF+ M  +D+VSW  M+ G A +   E A GLF+ M++
Sbjct: 298 VRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQE 357

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL------- 458
           EG  PD+ T++ ++ AC  +  +        S+ R+  I  QV   G   DLL       
Sbjct: 358 EGIQPDRITYIHIINACASSADL--------SLARE--IHSQVVRAGFGTDLLVDTALVH 407

Query: 459 --GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
              + G +K+A ++  +M    + + W  ++GA  ++   E A E    L++    +P  
Sbjct: 408 MYAKCGAIKDARQVFDAMS-RRDVVSWSAMIGAYVENGCGEEAFETFH-LMKRNNVEPDV 465

Query: 517 YTMLSNIFAATG 528
            T + N+  A G
Sbjct: 466 VTYI-NLLNACG 476



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 133/281 (47%), Gaps = 15/281 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  +++ +Q+++     D  +   L+   A C  +  A +VF+ +   DV  ++ +I 
Sbjct: 379 DLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIG 438

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A V+N    +AF  F  M+   V  D  TY  LL AC       L   I+    K     
Sbjct: 439 AYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVS 498

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            I V N+LI+   K G   +  A+ +F +M +RD+V+WN MI G    G   EA  LFD 
Sbjct: 499 HIPVGNALINMNVKHG--SIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDR 556

Query: 209 M-PER---DAVSWNTILDGYAKAGEMNLAFELFEK-IPHRNIVS----WSTMVWGYSKDG 259
           M  ER   ++V++  +L   ++AG +      F   +  R IV     +  MV    + G
Sbjct: 557 MLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAG 616

Query: 260 DMEMAKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAA 296
           +++ A+LL +RMP K     W+ +++    Y    +A+ AA
Sbjct: 617 ELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAA 657


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 300/555 (54%), Gaps = 40/555 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F+ +  P   L +T + +  + S +    + F  M  KG +  +   P + K+C  
Sbjct: 72  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 131

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  + +H      G  GD+FV  +L+D Y+K G   +  A  +F  M  +D +  N
Sbjct: 132 TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNG--DMESAVSVFDEMPVKDPIPIN 189

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHR 243
            +I G  K G++ +ARRLFD M  R + SWN+++  YA  GE   A  LF+++       
Sbjct: 190 CLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARP 249

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLL----------------------------------FD 269
           N ++ +++    +K GD++  K +                                  FD
Sbjct: 250 NAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFD 309

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           RM  + +V W+ +I+GYA+ G   E+  L+++M+    +P++ TL+ +++ACA+ G   L
Sbjct: 310 RMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDEL 369

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             ++       R    + + +AL+DMY +CG +  A SVF+ M +K +++WN+M+ GLAM
Sbjct: 370 VEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAM 429

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G  E A+ L+ +M + G  P++ TFV +L ACTHAG +D+G+ +F  M+R++ + PQVE
Sbjct: 430 NGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVE 489

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           H  C++DLL +SG L EA + +  M VEPNA+IW TLL +CR H  VELA+     L+ +
Sbjct: 490 HCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAM 549

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  +   Y +LSNI+A  G W     +R  M+    QK S  S +++D EVH+F V D  
Sbjct: 550 EPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFLVQDTY 609

Query: 570 HPKSEQIYQMINTLG 584
           HP+S +IY +I+ LG
Sbjct: 610 HPRSAEIYDVIHGLG 624



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 172/406 (42%), Gaps = 44/406 (10%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND--IQDP----------- 78
           Q +Q+    +   L  D ++   L+   A    M  A+ VF++  ++DP           
Sbjct: 137 QGRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYS 196

Query: 79  ---DVH---------------LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
              DV                 +N++I          +A  +F  M  +G   +  T   
Sbjct: 197 KAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSEGARPNAITITS 256

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           +   C         + +  LI +     ++ V  +L++ Y KC    +  A++ F  M +
Sbjct: 257 VFSICAKSGDLDTGKRVRDLIGE-DDLQNVIVHTALMEMYVKCR--AIDDARREFDRMSQ 313

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           RD+V+W++MIAG  + G   E+  LF+ M   D       L G   A     + EL E+I
Sbjct: 314 RDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQI 373

Query: 241 PHRN------IVSW--STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
            +        + S+  S ++  Y++ G +  A+ +F RM  K ++ W  +I G A  G A
Sbjct: 374 GNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFA 433

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNA 351
           ++A  LY++M E G++P++ T +++LAAC  +GL+  GM     + + +        C  
Sbjct: 434 EDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCAC 493

Query: 352 LVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
           +VD+  K G L  A      M  + + V W  +L     H   E A
Sbjct: 494 IVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELA 539



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 148/317 (46%), Gaps = 22/317 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L+  K++   I + DLQ +  +   L+     CR +  A + F+ +   DV  ++T
Sbjct: 263 KSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWST 321

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN    ++  +F  M+      +  T   ++ AC       LV+ I        
Sbjct: 322 MIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQR 381

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y++CG VG   A+ +F  M ++ +++WNSMI GL   G   +A  L
Sbjct: 382 LPLTSYLGSALIDMYTRCGHVG--RARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISL 439

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYS 256
           +++M E     + +++  +L     AG ++     FE++   ++VS      + +V    
Sbjct: 440 YEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLC 499

Query: 257 KDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           K G + E  K + D       V WT ++S    +A+  +AK A+R    ME     PD+ 
Sbjct: 500 KSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME-----PDNS 554

Query: 313 TLISILAAC-AESGLLG 328
           ++  +L+   A++GL G
Sbjct: 555 SIYVLLSNIYADAGLWG 571



 Score = 47.8 bits (112), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 30/226 (13%)

Query: 46  QRDP---YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           QR P   Y+   LI     C  +G A  VF+ ++   V  +N++IR    N     A  +
Sbjct: 380 QRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISL 439

Query: 103 FLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHAL---IYKCGYFGDIFV 152
           +  M E GV  +  T+  LL AC        G  +F  ++  H +   +  C    D+  
Sbjct: 440 YEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLL- 498

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEA----RRLFD 207
                     C   G+  A K    M  E + V W ++++      ++  A    R+L  
Sbjct: 499 ----------CKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLA 548

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
             P+  ++ +  + + YA AG    A E+ + +  +N+   S   W
Sbjct: 549 MEPDNSSI-YVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSW 593


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 202/626 (32%), Positives = 319/626 (50%), Gaps = 83/626 (13%)

Query: 49  PYIAPKLISSLALCRQMGLAIKVFNDI--QDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           P  A  L+S+ A+  ++  +   F+ +     D  L+N +I A  + SL A A  VF  +
Sbjct: 89  PVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSL 148

Query: 107 --QEKGVFTDNFTYPFLLKACNGKNWF---HLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
              +  +  D++++  LL A    +     H  Q+ H  ++K G    + V N+LI  Y 
Sbjct: 149 LASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQL-HCAVHKLGAGAVLSVSNALIALYM 207

Query: 162 KCGVVGVSL-AKKLFMSMGERD-------------------------------IVSWNSM 189
           KC   GV+  A+K+   M E+D                                V WN+M
Sbjct: 208 KCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAM 267

Query: 190 IAGLVKGGELSEARRLFDEM---------------------------------------- 209
           I+G V+ G  +EA  LF  M                                        
Sbjct: 268 ISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQP 327

Query: 210 ---PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
              PE      N ++  Y+K+G++ +A ++F+ +  +++VSW+T++ GY + G ++ A  
Sbjct: 328 DFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAAR 387

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F  MP K+ + W +++SGY   G+A++A +L++QM    +KP D T    +AAC E G 
Sbjct: 388 IFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGA 447

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L  G ++HA + +  F+ + +  NAL+ MYA+CG++ +A  VF  M   D VSWNAM+  
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           L  HG G +AL LF +M  +G  PD+ +F+ +L AC HAG +D G QYF SMERD+GI P
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISP 567

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
             +HY  +IDLLGR+GR+ EA  L+++MP EP   IW  +L  CR +  +EL     D L
Sbjct: 568 GEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQL 627

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
            ++     G Y +LSN ++A G W   A VR  M+    +K  G S +EV N+VH F V 
Sbjct: 628 FKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVG 687

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGH 592
           D  HP + ++Y+ +  +G  ++ +G+
Sbjct: 688 DTKHPDAHEVYRFLEMVGAKMRKLGY 713



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 37/220 (16%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   KQL A +++   +        L++  A C  +  A  VF  + + D   +N +I A
Sbjct: 448 LKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISA 507

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  +F  M  +G++ D  ++  +L ACN           HA +   G+   
Sbjct: 508 LGQHGHGREALELFDQMVAQGIYPDRISFLTILTACN-----------HAGLVDDGF--- 553

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
                     Y +      S+ +   +S GE     +  +I  L + G + EAR L   M
Sbjct: 554 ---------QYFE------SMERDFGISPGED---HYARLIDLLGRAGRIGEARDLIKTM 595

Query: 210 P-ERDAVSWNTILDGYAKAGEMNL----AFELFEKIPHRN 244
           P E     W  IL G    G+M L    A +LF+ +P  +
Sbjct: 596 PFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHD 635


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 203/593 (34%), Positives = 313/593 (52%), Gaps = 10/593 (1%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK 70
           FS    L+  L N  K K+L    Q+ +Q++  +          L+   A C  +   + 
Sbjct: 94  FSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLL 153

Query: 71  VFNDIQDPDVHL--YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK 128
           +FN    P  ++  + TLI    +++   QA   F  M+  G++ ++FT+  +L AC   
Sbjct: 154 LFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHA 213

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
                 Q IHALI+K  +  D FV  +L+D Y+KCG   + LA+ +F  M  R++VSWNS
Sbjct: 214 ALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCG--SMLLAENVFDEMPHRNLVSWNS 271

Query: 189 MIAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           MI G VK      A  +F E+     D VS +++L   A   E++   ++   I  R +V
Sbjct: 272 MIVGFVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLV 331

Query: 247 SW----STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
                 +++V  Y K G  E A  LF     + +V W ++I G       ++A   +  M
Sbjct: 332 GLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAM 391

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
              G++PD+ +  S+  A A    L  G  +H+ + K     N+ + ++LV MY KCGS+
Sbjct: 392 IREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSM 451

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
            +A  VF    + ++V W AM+     HG   +A+ LF  M +EG  P+  TFV VL AC
Sbjct: 452 LDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSAC 511

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H G ID G +YF SM   + I P +EHY CM+DLLGR GRL+EA R ++SMP EP++++
Sbjct: 512 SHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLV 571

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG LLGAC KH  VE+  EV + L +L+  +PGNY +LSNI+   G   +   VR  M  
Sbjct: 572 WGALLGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGI 631

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
              +K SG S ++V N    F+  D+ H ++++IY M+  L + +K  G+ A+
Sbjct: 632 NGVRKESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAE 684


>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
 gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
          Length = 442

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 161/378 (42%), Positives = 256/378 (67%), Gaps = 2/378 (0%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           D  +   ++D YAK G + LA ++F+++  R+I +W++++ GYS+ GDME A  LF  MP
Sbjct: 44  DVYALTALVDMYAKLGVLMLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMP 103

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGM 331
           ++++V WT +ISGY++ GM  +A  ++ +ME +  ++P++ T+ S+ +ACA+ G L +G 
Sbjct: 104 SRSVVSWTTMISGYSQNGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGE 163

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-DLVSWNAMLYGLAMH 390
           ++ +         N  V N L++MYA+CG +D A  VFN + K+ +L SWN+M+ GLA+H
Sbjct: 164 RIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVH 223

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G+  +AL L+ +M  EG  PD  TFVG++ ACTH G + KG Q F SME ++ I+P++EH
Sbjct: 224 GRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEH 283

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+DLLGR+G L+EA  LV+SMP++P+++IWGTLLGAC  H+ VE AE   + L +++
Sbjct: 284 YGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVE 343

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
             +PGNY +L NI+A+   W+ VA +R  MK  +  K +G S +E + E+H+F V D+ H
Sbjct: 344 PWNPGNYVILCNIYASAQRWDGVAKLRKLMKGGQITKAAGYSVIEGEGEIHKFIVEDKSH 403

Query: 571 PKSEQIYQMINTLGKDLK 588
           P+  +IY ++N +   +K
Sbjct: 404 PRHYEIYALLNEISTKMK 421



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 53/358 (14%)

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLV--QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           KG   +  T+ FL  AC   +++ L+  ++IH    K G+  D++   +L+D Y+K GV+
Sbjct: 4   KGCPPNELTFTFLFPAC--ASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVL 61

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
              LA+++F  M  RDI +WNS+IAG  + G++  A  LF  MP R  VSW T++ GY++
Sbjct: 62  --MLARQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQ 119

Query: 227 AGEMNLAFELFEKIPH----------------------------------------RNIV 246
            G    A E+F K+                                          +N+ 
Sbjct: 120 NGMYTKALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLY 179

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRM-PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
             +T++  Y++ G ++ A+ +F+ +   + L  W  ++ G A  G + EA +LYDQM   
Sbjct: 180 VSNTLLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGE 239

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDN 364
           G++PDD T + ++ AC   GL+  G ++  S+   +           +VD+  + G L  
Sbjct: 240 GIEPDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQE 299

Query: 365 AMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA-LGLFSRMKDEGFGPDKYTFVGVLC 420
           A  +   M  K D V W  +L   + H   E A +   S  + E + P  Y    +LC
Sbjct: 300 AYDLVKSMPMKPDSVIWGTLLGACSFHSNVEFAEIAAESLFQVEPWNPGNYV---ILC 354



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 105/254 (41%), Gaps = 34/254 (13%)

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G  P++ T   +  ACA    L  G  +H    K  F  +     ALVDMYAK G L  A
Sbjct: 5   GCPPNELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLA 64

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM---------------------- 403
             VF+ MT +D+ +WN+++ G +  G  E AL LF  M                      
Sbjct: 65  RQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYT 124

Query: 404 ----------KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
                     KD+   P++ T   V  AC   G ++ G +   S  RD G++  +     
Sbjct: 125 KALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVG-ERIESYARDNGLMKNLYVSNT 183

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           ++++  R G++  A  +   +    N   W +++     H     A ++ D ++  +G +
Sbjct: 184 LLEMYARCGKIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLG-EGIE 242

Query: 514 PGNYTMLSNIFAAT 527
           P + T +  I A T
Sbjct: 243 PDDVTFVGLILACT 256



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 113/239 (47%), Gaps = 13/239 (5%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      LI+  +    M  A+++F  +    V  + T+I    QN +  +A  +FL M
Sbjct: 74  RDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYTKALEMFLKM 133

Query: 107 Q-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           + +K V  +  T   +  AC       + + I +     G   +++V N+L++ Y++CG 
Sbjct: 134 EKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCG- 192

Query: 166 VGVSLAKKLFMSMGER-DIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTI 220
             +  A+ +F  +G+R ++ SWNSM+ GL   G  +EA +L+D+M     E D V++  +
Sbjct: 193 -KIDAARHVFNEIGKRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGL 251

Query: 221 LDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +      G +   ++LF+ +         +  +  MV    + G+++ A  L   MP K
Sbjct: 252 ILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMK 310


>gi|413925171|gb|AFW65103.1| hypothetical protein ZEAMMB73_773985 [Zea mays]
          Length = 567

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 191/551 (34%), Positives = 291/551 (52%), Gaps = 40/551 (7%)

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N  I A  +    A A RVF  M  + V + N     L +A       H +     L  +
Sbjct: 19  NQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGR-----HHLPAARRLFDE 73

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVG-VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                D+   NS+I   + C   G +  A   F    ER++ +WN+M+AGLV+ G + +A
Sbjct: 74  AMPSRDVVSWNSII---AGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVVDA 130

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW-------------- 248
           +RLFDEMPER+ VS+ T++D  A+ GE+  A E+F+ +P RN+VSW              
Sbjct: 131 QRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGMFV 190

Query: 249 -----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                            + M+ G+ K GD++ A+ LFD + AK ++ W  +I+GY   G 
Sbjct: 191 EARELFEAMPEKNVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGH 250

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
            +EA RL+  M   G+KPD  TLI++L AC+   LL  G   HA   K   +   +  NA
Sbjct: 251 GEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESGISFSNA 310

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+ MY+KCG++  +  VF  +  KD+VSWN ++   A HG+ +K + LF  M+  G  PD
Sbjct: 311 LMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPD 370

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             TF+ VL AC H G +D  ++ F  M   Y I P+ EHY C++D+L R+G+L++A   +
Sbjct: 371 DITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYI 430

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           + MP++    +WG+LLGAC+ H  V+L E     L++      G Y +LSNI+AA G W 
Sbjct: 431 KHMPLKAEKNVWGSLLGACQIHGNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWG 490

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +V  +R QMK+   +K  G S  E+ NEVH F   D  HP+  +I   +  +   ++ V 
Sbjct: 491 QVNQIRGQMKERGVKKQPGYSWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHMRMVT 550

Query: 592 HAAKLSAEIGE 602
           + A +  E+ +
Sbjct: 551 NEAHIMVELAQ 561



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 194/424 (45%), Gaps = 69/424 (16%)

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL--AF 234
           S+  R ++  N  I+ L + G+++ ARR+FD M  RD VSWN +L    +AG  +L  A 
Sbjct: 9   SLAARRLLRDNQRISALARAGDVAAARRVFDAMTHRDVVSWNALLTALWRAGRHHLPAAR 68

Query: 235 ELF-EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            LF E +P R++VSW++++ G    GD++ A   F   P + +  W  +++G    G   
Sbjct: 69  RLFDEAMPSRDVVSWNSIIAGCLAHGDLDAASAYFAGAPERNVATWNAMLAGLVRLGRVV 128

Query: 294 EAARLYDQMEEAGL------------------------KPDDGTLIS---ILAACAESGL 326
           +A RL+D+M E  +                           D  L+S   +++ C E+G+
Sbjct: 129 DAQRLFDEMPERNVVSYTTMVDWLARRGEVERAREVFDSMPDRNLVSWAAMISGCVENGM 188

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
                ++  ++ +     N   C A++  + K G +D+A  +F+G+  KD++SWNAM+ G
Sbjct: 189 FVEARELFEAMPEK----NVVACTAMITGHCKQGDVDSARRLFDGIRAKDVISWNAMIAG 244

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-----------THA----GFIDKG 431
              +G GE+A+ L + M  EG  PD  T + VL AC           THA      ++ G
Sbjct: 245 YVHNGHGEEAMRLHALMFREGVKPDHATLIAVLTACSALALLRQGKSTHAIAIKAMLESG 304

Query: 432 VQY---FYSMERDYGILPQVE------------HYGCMIDLLGRSGRLKEALRLVQSMPV 476
           + +     +M    G + + E             +  +I    + G+ ++ + L   M V
Sbjct: 305 ISFSNALMTMYSKCGNVGESELVFINLRTKDIVSWNTIIAAYAQHGKYQKVIALFHEMEV 364

Query: 477 E---PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWN 531
               P+ I + ++L AC     V+ + ++ D +       P   +Y  + +I +  G   
Sbjct: 365 TGLIPDDITFLSVLSACGHVGMVDASLKLFDLMSSKYAISPRAEHYACIVDILSRAGQLE 424

Query: 532 KVAN 535
           K ++
Sbjct: 425 KASS 428



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 152/354 (42%), Gaps = 59/354 (16%)

Query: 62  CRQ--MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYP 119
           C+Q  +  A ++F+ I+  DV  +N +I   V N    +A R+   M  +GV  D+ T  
Sbjct: 215 CKQGDVDSARRLFDGIRAKDVISWNAMIAGYVHNGHGEEAMRLHALMFREGVKPDHATLI 274

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
            +L AC+        +  HA+  K      I   N+L+  YSKCG VG S  + +F+++ 
Sbjct: 275 AVLTACSALALLRQGKSTHAIAIKAMLESGISFSNALMTMYSKCGNVGES--ELVFINLR 332

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE 235
            +DIVSWN++IA   + G+  +   LF EM       D +++ ++L      G ++ + +
Sbjct: 333 TKDIVSWNTIIAAYAQHGKYQKVIALFHEMEVTGLIPDDITFLSVLSACGHVGMVDASLK 392

Query: 236 LFEKIPHRNIVS-----WSTMVWGYSKDGDMEMAKLLFDRMP------------------ 272
           LF+ +  +  +S     ++ +V   S+ G +E A      MP                  
Sbjct: 393 LFDLMSSKYAISPRAEHYACIVDILSRAGQLEKASSYIKHMPLKAEKNVWGSLLGACQIH 452

Query: 273 ---------AKTLV--------PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
                    AK LV        P+ I+ + YA  GM  +  ++  QM+E G+K   G   
Sbjct: 453 GNVQLGELAAKMLVQSDSQSSGPYVILSNIYAAAGMWGQVNQIRGQMKERGVKKQPG--Y 510

Query: 316 SILAACAESGLLGLGMKVHASINK---------YRFKCNTNVCNALVDMYAKCG 360
           S      E  +   G   H  + K         +  +  TN  + +V++  +CG
Sbjct: 511 SWTEIGNEVHMFVGGDASHPEMRKIISELRKISFHMRMVTNEAHIMVELAQECG 564


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 159/387 (41%), Positives = 254/387 (65%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           D +    ++D YAK G+++ A  +F+++  RN+VSW+TM+ GY K+GD++ A  LFD++P
Sbjct: 125 DVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLP 184

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            K +V WT++I G+ +K   +EA   + +M+ AG+ PD  T+I+I++ACA  G LGLG+ 
Sbjct: 185 VKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACANLGALGLGLW 244

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           VH  + K  F+ N  V N+L+DMYA+CG ++ A  VF+GM++++LVSWN+++ G A++G 
Sbjct: 245 VHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGL 304

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            +KAL  F  MK EG  P+  ++   L AC+HAG ID+G++ F  ++RD+   P++EHYG
Sbjct: 305 ADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYG 364

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           C++DL  R+GRLKEA  +++ MP+ PN ++ G+LL ACR    VELAE+V+   + L   
Sbjct: 365 CLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVELAEKVMKYQVELYPG 424

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
              NY + SNI+AA G W+  + VR +MK+   QK    SS+E+D+ +H+F   D+ H +
Sbjct: 425 GDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSIEIDSGIHKFVSGDKYHEE 484

Query: 573 SEQIYQMINTLGKDLKPVGHAAKLSAE 599
           ++ IY  +  L  +L   G+    S +
Sbjct: 485 NDYIYSALELLSFELHLYGYVPDFSGK 511



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 162/333 (48%), Gaps = 47/333 (14%)

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN---GKNWFHLVQMIHAL 140
           +++   C  N+   +A   F+ M E  V  ++ T   LL AC     K        +H  
Sbjct: 57  SSISHHCKNNNF-LKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAALHTH 115

Query: 141 IYKCGY-FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            +K G+   D+ V  +LID Y+KCG   +  A+ +F  MG R++VSWN+MI G +K G++
Sbjct: 116 AFKHGFAMNDVMVGTALIDMYAKCG--KLDYARLVFDQMGVRNLVSWNTMIDGYMKNGDV 173

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK------IP------------ 241
            +A +LFD++P ++ VSW  ++ G+ K      A E F +      +P            
Sbjct: 174 DDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISAC 233

Query: 242 ------------HR---------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                       HR         N+   ++++  Y++ G +E+A+ +FD M  + LV W 
Sbjct: 234 ANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLVSWN 293

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK- 339
            II G+A  G+A +A   +  M++ GL+P+  +  S L AC+ +GL+  G+K+ A I + 
Sbjct: 294 SIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRD 353

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           +R          LVD+Y++ G L  A  V   M
Sbjct: 354 HRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKM 386



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 142/319 (44%), Gaps = 46/319 (14%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+K+F+ +   +V  +  +I   V+     +A   F +MQ  GV  D  T   ++ AC  
Sbjct: 176 ALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVVPDFVTVIAIISACAN 235

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   +H L+ K  +  ++ V NSLID Y++CG   + LA+++F  M +R++VSWN
Sbjct: 236 LGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGC--IELARQVFDGMSQRNLVSWN 293

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIP-- 241
           S+I G    G   +A   F  M     E + VS+ + L   + AG ++   ++F  I   
Sbjct: 294 SIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADIKRD 353

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           HRN                            +  +  +  ++  Y+  G  KEA   +D 
Sbjct: 354 HRN----------------------------SPRIEHYGCLVDLYSRAGRLKEA---WDV 382

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV---DMYAK 358
           +++  + P++  L S+LAAC   G + L  KV     KY+ +      +  V   ++YA 
Sbjct: 383 IKKMPMMPNEVVLGSLLAACRTQGDVELAEKVM----KYQVELYPGGDSNYVLFSNIYAA 438

Query: 359 CGSLDNAMSVFNGMTKKDL 377
            G  D A  V   M ++ L
Sbjct: 439 VGKWDGASKVRREMKERGL 457



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 131/286 (45%), Gaps = 22/286 (7%)

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES---GLLGLGMKV 333
           V WT  IS + +     +AA  + QM EA ++P+  TLI++L+ACA S     +  G  +
Sbjct: 53  VSWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLLSACAHSPSKTSITFGAAL 112

Query: 334 HASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           H    K+ F  N   V  AL+DMYAKCG LD A  VF+ M  ++LVSWN M+ G   +G 
Sbjct: 113 HTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNGD 172

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
            + AL LF ++  +       ++  V+         ++ ++ F  M+   G++P      
Sbjct: 173 VDDALKLFDKLPVKNV----VSWTVVIGGFVKKECYEEALECFREMQL-AGVVPDFVTVI 227

Query: 453 CMIDLLGRSGRLKEAL---RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
            +I      G L   L   RLV       N  +  +L+    +   +ELA +V D     
Sbjct: 228 AIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFD----- 282

Query: 510 KGSDPGNYTMLSNI---FAATGDWNKVANVRLQMKKTRAQKPSGAS 552
            G    N    ++I   FA  G  +K  +    MKK    +P+G S
Sbjct: 283 -GMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKK-EGLEPNGVS 326


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 174/501 (34%), Positives = 288/501 (57%), Gaps = 46/501 (9%)

Query: 128 KNWFHLVQM--IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
           KN F + Q+  IHA + K       F+   ++DS    G   VS A  LF  +   +I +
Sbjct: 18  KNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLG--HVSYATLLFKQLLHPNIFT 75

Query: 186 WNSMIAGLVKGGELSEARRLFDEM---------PER------------------------ 212
           +N++I         S A  +F +M         P++                        
Sbjct: 76  YNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHG 135

Query: 213 ---------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
                      ++ N ++D Y K G++  A ++FE++ HR+++SW+++++GY K G M  
Sbjct: 136 LVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNS 195

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ LFD MP +T+V WT +I+GY   G   +A  ++ +M+  G++PD+ ++I++L ACA+
Sbjct: 196 ARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQ 255

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G L +G  +H   +K  F   T +CNAL++MYAKCG +D A ++F+ + +KD++SW+ M
Sbjct: 256 LGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTM 315

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GLA HG+G +A+ LF  M      P++ TF+GVL AC+H G  D+G++YF  M   Y 
Sbjct: 316 IGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYH 375

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P++EHYGC+IDLLGRSG L +AL  +  MP++P++ IW +LL +CR H  +++A   +
Sbjct: 376 IEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAV 435

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L+ L+  + GNY +L+N++A  G W  V+N+R  ++  R +K  G+SS+EV+N V EF
Sbjct: 436 KQLMELEPEESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEF 495

Query: 564 SVCDQLHPKSEQIYQMINTLG 584
              D   P S++++ ++  L 
Sbjct: 496 VSSDDSKPFSQEVFWILEGLA 516



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 202/421 (47%), Gaps = 46/421 (10%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R L    + +L  C  + Q K++ A ++KL L +  ++  K++ S      +  A  +F 
Sbjct: 7   RELENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFK 66

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM---QEKGVFTDNFTYPFLLKACNGKNW 130
            +  P++  YN +IR    N  ++ A  VF+ M       VF D FT+PF++K+C G   
Sbjct: 67  QLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILC 126

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             L   +H L+YK G        N+LID Y+K G   ++ A K+F  M  RD++SWNS+I
Sbjct: 127 HRLGMQVHGLVYKFGADFHCITENALIDMYTKFG--DLTNACKVFEEMSHRDVISWNSLI 184

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV---- 246
            G VK G+++ AR LFD+MP R  VSW T++ GY + G    A ++F ++    I     
Sbjct: 185 FGYVKLGQMNSARELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEI 244

Query: 247 ------------------SW-----------------STMVWGYSKDGDMEMAKLLFDRM 271
                              W                 + ++  Y+K G ++ A  LFD++
Sbjct: 245 SIIAVLPACAQLGALEVGKWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQL 304

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             K ++ W+ +I G A  G   EA +L+++M +  + P++ T + +L AC+ +GL   G+
Sbjct: 305 VEKDVISWSTMIGGLANHGKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGL 364

Query: 332 KVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAM 389
           K    ++  Y  +        L+D+  + G L  A+   + M  K D   WN++L    +
Sbjct: 365 KYFDVMSASYHIEPEIEHYGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRI 424

Query: 390 H 390
           H
Sbjct: 425 H 425


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 157/382 (41%), Positives = 245/382 (64%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E+D    N+++  YA  G+   A  +F+++ + ++VSW++M+ G++K GD+E A+ LFD+
Sbjct: 151 EKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQ 210

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP K LV W+ +ISGYA+     +A  L+  ++  G++ ++  ++S++++CA  G L LG
Sbjct: 211 MPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALELG 270

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            + H  + K     N  +  ALVDMYA+CGS+D A+ VF  + ++D +SW A++ GLAMH
Sbjct: 271 ERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMH 330

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G  E++L  F+ M + G  P   TF  VL AC+H G +++G Q F SM+RD+ + P++EH
Sbjct: 331 GYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEH 390

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+DLLGR+G+L+EA R V  MPV+PNA +WG LLGACR H   E+ E V   LI+L 
Sbjct: 391 YGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLL 450

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
               G Y +LSNI+A   +W KV  +R  MK    +KP G S +E+D  VH+F++ D  H
Sbjct: 451 PQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSH 510

Query: 571 PKSEQIYQMINTLGKDLKPVGH 592
           P+ ++I +M   +   ++  G+
Sbjct: 511 PEMDKIERMWEEILMRIRAAGY 532



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 121/432 (28%), Positives = 209/432 (48%), Gaps = 53/432 (12%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ------ 64
           F   RL   KL +L  C +L   K + A +I+  +  D + A +LI   A C        
Sbjct: 11  FKTLRLKNPKLFSLETCSDLTHLKIIHAYMIRTHIICDVFAASRLI---AFCVDPSSGTS 67

Query: 65  -MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
            +  A ++F+ IQ+P++ ++N +IR    +    QAF  ++  Q +G+  DN T+PFL+K
Sbjct: 68  LIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVK 127

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           +C   +   +    H  I K G+  D++V NSL+  Y+  G      A  +F  M   D+
Sbjct: 128 SCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFG--DTEAATLIFQRMYYVDV 185

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           VSW SMI G  K G++  AR+LFD+MPE++ V+W+T++ GYA+    + A ELF+ +  +
Sbjct: 186 VSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQ 245

Query: 244 ---------------------------------------NIVSWSTMVWGYSKDGDMEMA 264
                                                  N++  + +V  Y++ G ++ A
Sbjct: 246 GVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKA 305

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F+ +P +  + WT +I+G A  G ++ + + +  M EAGL P D T  ++L+AC+  
Sbjct: 306 VWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHG 365

Query: 325 GLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMS-VFNGMTKKDLVSWNA 382
           GL+  G ++  S+ + +R +        +VD+  + G L+ A   V     K +   W A
Sbjct: 366 GLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGA 425

Query: 383 MLYGLAMHGQGE 394
           +L    +H   E
Sbjct: 426 LLGACRIHKNAE 437



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/298 (21%), Positives = 129/298 (43%), Gaps = 34/298 (11%)

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ A  +F ++    L  +  +I G++      +A   Y Q +  GL PD+ T   ++ +
Sbjct: 69  IDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKS 128

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C +   + +G + H  I K+ F+ +  V N+LV MYA  G  + A  +F  M   D+VSW
Sbjct: 129 CTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSW 188

Query: 381 NAMLYGL-------------------------------AMHGQGEKALGLFSRMKDEGFG 409
            +M+ G                                A +   +KA+ LF  ++ +G  
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
            ++   V V+ +C H G ++ G +    + ++ G+   +     ++D+  R G + +A+ 
Sbjct: 249 ANETVMVSVISSCAHLGALELGERAHDYVVKN-GMTLNLILGTALVDMYARCGSIDKAVW 307

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + + +P E + + W  L+     H   E + +    ++   G  P + T  + + A +
Sbjct: 308 VFEDLP-ERDTLSWTALIAGLAMHGYSERSLKYFATMVE-AGLTPRDITFTAVLSACS 363



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 333 VHASINKYRFKCNTNVCNAL----VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           +HA + +    C+    + L    VD  +    +D A  +F+ +   +L  +NAM+ G +
Sbjct: 36  IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHS 95

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-----YSMERDYG 443
                ++A   + + + +G  PD  TF  ++ +CT    I  G Q       +  E+D  
Sbjct: 96  GSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVY 155

Query: 444 ILPQVEH-------------------------YGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           +   + H                         +  MI    + G ++ A +L   MP E 
Sbjct: 156 VQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMP-EK 214

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           N + W T++    ++N  + A E+   L + +G       M+S I
Sbjct: 215 NLVTWSTMISGYAQNNHFDKAVELFKVL-QSQGVRANETVMVSVI 258


>gi|449459744|ref|XP_004147606.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
 gi|449529850|ref|XP_004171911.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Cucumis sativus]
          Length = 580

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 316/575 (54%), Gaps = 51/575 (8%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQR-DPYIAPKLISSLALCRQM--GLAIKVFNDIQDPDV 80
           L+   ++ Q  Q+ AQI+   L   +  +  ++  S   C ++      ++ +  ++PD 
Sbjct: 10  LNSSVHVKQATQIHAQILVNGLPNLESCLVRQITRSQFTCARIVSRYLQRILHHSRNPDA 69

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-----KNWFHLVQ 135
             +   +R   QN    +A   ++ MQ  G+    F     L+AC       + W     
Sbjct: 70  FTWACAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKFRGW----- 124

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IHA +YK G+   ++V  +L+D YSK G +G   A+K+F  M E+++VSWNS+++G VK
Sbjct: 125 CIHAQVYKLGFCRCVYVQTALVDFYSKLGDMG--FAQKVFDEMTEKNVVSWNSILSGYVK 182

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            G L +A++LFDEMP +DA+SWN++L G++ +G M+ A  LF+++  ++  SW+ M+ GY
Sbjct: 183 IGNLVDAQKLFDEMPVKDAISWNSMLTGFSNSGNMDRACCLFQQMGEKSSASWNAMIGGY 242

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA---------- 305
              GDM+ A+ LFD MP +  V    +I+GY++ G    A  L+D+MEE+          
Sbjct: 243 VNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSAYELFDKMEESEKELLSFNAM 302

Query: 306 -------------------------GLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
                                     ++PD+ T  S+++AC + G L  G  + + + K 
Sbjct: 303 IACYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKL 362

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             + + ++  ALVD+YAK G+++ A  +FNG+ K+DLV+++AM++G  ++ +  +A+ LF
Sbjct: 363 GIELDDHLATALVDLYAKSGNINRAFELFNGLKKRDLVAYSAMIFGCGINSKAHEAIRLF 422

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             M      P+  T+ G+L A  HAG +D+G   F SM +D+G+ P  +HYG M+DLLGR
Sbjct: 423 KEMLRVNICPNLVTYAGLLTAYNHAGLVDEGYLCFSSM-KDHGLAPLADHYGIMVDLLGR 481

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +GRL+EA  L+ SMPV+PNA +WG LL AC+ HN VEL E       +L     G  ++L
Sbjct: 482 AGRLEEAYELIHSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLL 541

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +NI+++   W+    +R  M      K SG S +E
Sbjct: 542 ANIYSSMERWDDAKRMRKAMGNKIFAKISGCSWME 576


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 189/565 (33%), Positives = 307/565 (54%), Gaps = 44/565 (7%)

Query: 14   RRLLEE-KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-MGLAIKV 71
            R+LL++ K+  L +   +   K+L A ++   L    Y   K+I   AL +  +  A KV
Sbjct: 838  RKLLDQRKIVKLQEAV-MEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKV 896

Query: 72   FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
            F  I+ P   L+NTL+R   Q+     A   +   QEKG+  DN T+PF+LKAC      
Sbjct: 897  FKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAP 956

Query: 132  HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
               + +H  + K G+  DIFV NSLI  Y+ CG   ++ A+ +F  M  +D+VSWNS+I 
Sbjct: 957  KEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACG--ALACARSVFNEMLVKDVVSWNSLIG 1014

Query: 192  GLVKGGELSEARRLFDEMP---------------------------------------ER 212
            G  +   L E   LF  M                                        E 
Sbjct: 1015 GYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEV 1074

Query: 213  DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
            D    NT++D Y + G++  A ++F ++  +N V+ + M+  Y+K G++  AK +FD++P
Sbjct: 1075 DVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIP 1134

Query: 273  AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
             K L+ W+ +I  Y++     ++  L+ QM+ A +KPD   + S+L+ACA  G L LG  
Sbjct: 1135 NKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKW 1194

Query: 333  VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
            +H  + +   K +T + N+L+DM+AKCG +  A+ VF  M +KD +SWN+++ GLA +G 
Sbjct: 1195 IHDYVRRNNIKADTIMENSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGF 1254

Query: 393  GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
             ++AL +F  M  EG  P++ TF+GVL AC +   +++G+ +F  M+  + + PQ++HYG
Sbjct: 1255 EDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYG 1314

Query: 453  CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
            C++D+L R+G+L++A+  +  MP+ P+ ++W  LLGACR H  V +AE     L  L   
Sbjct: 1315 CVVDILSRAGQLEKAVSFISEMPLAPDPVVWRILLGACRTHGNVAVAEMATKKLSELDPG 1374

Query: 513  DPGNYTMLSNIFAATGDWNKVANVR 537
            +  +  +LSNI+A+   W+   NVR
Sbjct: 1375 NSADSMLLSNIYASADRWSDAMNVR 1399



 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/506 (29%), Positives = 256/506 (50%), Gaps = 75/506 (14%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A+KVF+    P    +   ++A        +A  +F   ++  +  D F + F+LKAC G
Sbjct: 437 ALKVFDQSPAP----WRAFLKAYSHGPFPLEALHLFKHARQH-LADDTFVFTFVLKACAG 491

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY--SKCGVVGVSLAKKLFMSMGERDIVS 185
             W      +HAL+ + G+    +V  +LI+ Y  S+C                      
Sbjct: 492 LGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRC---------------------- 529

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                        L EAR++FDEMP +                               N+
Sbjct: 530 -------------LVEARKVFDEMPVK-------------------------------NV 545

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           VSW+ M+ G++  G++E A+LLFD+MP + +V WT +I GY    +  EA  L   M   
Sbjct: 546 VSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAG 605

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+ P + T+++++ A +  G + +G  ++    K     +  V N+L+D+YAK GS+ N+
Sbjct: 606 GISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNS 665

Query: 366 MSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           + VF+ M  +++LVSW +++ G AMHG   +AL LF+ M+  G  P++ TF+ V+ AC+H
Sbjct: 666 LKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINACSH 725

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G +++G+ +F SM  +Y I P+++H+GC+ID+LGR+GRL EA ++++ +P+E N  +W 
Sbjct: 726 GGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWR 785

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LLG C K+  V + E  +  +  L+    G++ +LSN+    G ++     R  + + +
Sbjct: 786 ILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLDQRK 845

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLH 570
             K   A  +E   ++H   V   LH
Sbjct: 846 IVKLQEA-VMEAVKKLHAHLVVSGLH 870



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 137/574 (23%), Positives = 234/574 (40%), Gaps = 92/574 (16%)

Query: 35   QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI------- 87
            QL A +++   +   Y+   LI+   + R +  A KVF+++   +V  +N +I       
Sbjct: 500  QLHALVVQKGFEFHAYVHTALINVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWG 559

Query: 88   ----------------------------RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYP 119
                                        RAC    L A+A  +   M   G+     T  
Sbjct: 560  EVEYARLLFDQMPCRNVVSWTGLIDGYTRAC----LYAEALTLLRHMMAGGISPSEITVL 615

Query: 120  FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM- 178
             ++ A +      + +M++    K G   D  V NSLID Y+K G V  SL  K+F  M 
Sbjct: 616  AVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSVQNSL--KVFDEML 673

Query: 179  GERDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWNTILDGYAKAG--EM 230
              R++VSW S+I+G    G   EA  LF EM      P R  +++ ++++  +  G  E 
Sbjct: 674  DRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNR--ITFLSVINACSHGGLVEQ 731

Query: 231  NLAF---ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-WTIII--- 283
             LAF    ++E      I  +  ++    + G +  A+ + + +P +  V  W I++   
Sbjct: 732  GLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCC 791

Query: 284  SGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACA-------------------- 322
            S Y E  M + A ++   +E E+G   D   L ++L                        
Sbjct: 792  SKYGEVAMGERAIKMISDLERESG--GDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKL 849

Query: 323  ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS-LDNAMSVFNGMTKKDLVSWN 381
            +  ++    K+HA +            + ++ +YA   S L +A  VF  +       WN
Sbjct: 850  QEAVMEAVKKLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWN 909

Query: 382  AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
             +L GLA     + A+  + + +++G  PD  TF  VL AC       +G Q    + + 
Sbjct: 910  TLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIK- 968

Query: 442  YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
             G L  +     +I L    G L  A  +   M V+ + + W +L+G   +HN +   +E
Sbjct: 969  LGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVK-DVVSWNSLIGGYSQHNRL---KE 1024

Query: 502  VLDC--LIRLKGSDPGNYTMLSNIFAAT--GDWN 531
            VL    L++ +       TM+  I A T  GDW+
Sbjct: 1025 VLTLFKLMQAEEVQADKVTMVKVISACTHLGDWS 1058


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 216/681 (31%), Positives = 332/681 (48%), Gaps = 94/681 (13%)

Query: 1   MSAPIRA---PTWFSKRRLLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI 56
           ++ P+ A    + F  R  +  +L +++ K   LN  + LF +I     Q D      LI
Sbjct: 31  LARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIP----QPDIVARTTLI 86

Query: 57  SSLALCRQMGLAIKVFND--IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++ +    + L+ K+F+D  +   D   YN +I A   N     A  +F DMQ      D
Sbjct: 87  AAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPD 146

Query: 115 NFTYPFLLKACN--GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG----- 167
           N+T+  +L A     +   H  Q +H  + K G      V N+LI SY KC         
Sbjct: 147 NYTFTSVLGALALVAEKEKH-CQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSS 205

Query: 168 --VSLAKKLFMSMGERDI-------------------------------VSWNSMIAGLV 194
             ++ A+KLF  M  RD                                V+WN+MI+G  
Sbjct: 206 SLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYA 265

Query: 195 KGGELSEARRLFDEM-------------------------------------------PE 211
             G   EA  +F +M                                           P+
Sbjct: 266 HRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPD 325

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
                 N ++  Y K G++++A E+F K+P R++VSW+ ++ GY     M+ AK  F+ M
Sbjct: 326 VAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEM 385

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P K ++ W I+ISG A+ G A+EA + +++M+  G +P D      + +C+  G L  G 
Sbjct: 386 PEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGR 445

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++HA + +Y ++ + +  NAL+ MYA+CG +D A  +F  M   D +SWNAM+  L  HG
Sbjct: 446 QLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHG 505

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           QG +A+ LF  M  EG  PD+ +F+ V+ AC+HAG + +G +YF SM   YG+ P  EHY
Sbjct: 506 QGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHY 565

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             +IDLL R+G+  EA  +++SMP EP A IW  LL  CR H  ++L  E  + L  LK 
Sbjct: 566 ARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKP 625

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
              G Y +LSN++A  G WN +A VR  M+    +K  G S +EV+N+VH F V D  HP
Sbjct: 626 QHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHP 685

Query: 572 KSEQIYQMINTLGKDLKPVGH 592
           +  QIY  +  L  +++ +G+
Sbjct: 686 EVRQIYNYLEQLVLEMRKIGY 706



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 154/376 (40%), Gaps = 57/376 (15%)

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           + L + +HA +   G+     + N LID YSK     ++ A+ LF  + + DIV+  ++I
Sbjct: 29  YSLARPVHAHMIASGFQPRGHILNRLIDIYSKSS--KLNYARYLFDEIPQPDIVARTTLI 86

Query: 191 AGLVKGGELSEARRLFDEMP--ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
           A     G+L  +R++F + P   RD+V +N ++  Y+   + + A ELF           
Sbjct: 87  AAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELF----------- 135

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                      DM+      D         +T ++   A   +  E  +   Q+  A +K
Sbjct: 136 ----------CDMQRDNFRPDNY------TFTSVLGALA---LVAEKEKHCQQLHCAVVK 176

Query: 309 PDDGTLISILAACAES-------------GLLGLGMKVHASI-NKYRFKCNTNVCNALVD 354
              G + S+L A   S              L+    K+   + N+      T     ++ 
Sbjct: 177 SGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTT-----IIT 231

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            Y K   LD A    NG +KK  V+WNAM+ G A  G   +A  +F +M       D++T
Sbjct: 232 GYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFT 291

Query: 415 FVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEH--YGCMIDLLGRSGRLKEALRLV 471
           F  V+  C +AG    G + + Y ++      P V       +I    + G++  A  + 
Sbjct: 292 FTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIF 351

Query: 472 QSMPVEPNAIIWGTLL 487
             MP E + + W  +L
Sbjct: 352 NKMP-ERDLVSWNIIL 366



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 98/236 (41%), Gaps = 46/236 (19%)

Query: 312 GTLISILAACAESGL-LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           G+L+ I   C +S +   L   VHA +    F+   ++ N L+D+Y+K   L+ A  +F+
Sbjct: 15  GSLLQI--CCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFD 72

Query: 371 GMTKKDLVS---------------------------------WNAMLYGLAMHGQGEKAL 397
            + + D+V+                                 +NAM+   + +  G  A+
Sbjct: 73  EIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAI 132

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS--MERDYGILPQV------E 449
            LF  M+ + F PD YTF  VL A       +K  Q  +   ++   G +  V       
Sbjct: 133 ELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISS 192

Query: 450 HYGCMIDLLGRSGRL-KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +  C      +S  L  EA +L   MP   + + W T++    K+N ++ A+E L+
Sbjct: 193 YVKCAASPSAQSSSLMAEARKLFDEMP-NRDELSWTTIITGYVKNNDLDAAKEFLN 247


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/602 (32%), Positives = 324/602 (53%), Gaps = 61/602 (10%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           ++   L+S    C     A +VF+++++    D+  +N+++ A +Q   + +A ++F  M
Sbjct: 162 FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERM 221

Query: 107 QEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
            E  G+  D  +   +L AC     +   + +H    + G F D+FV N+++D Y+KCG+
Sbjct: 222 TEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGM 281

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
           +    A K+F  M  +D+VSWN+M+ G  + G   +A  LF+++ E     + V+W+ ++
Sbjct: 282 M--EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI 339

Query: 222 DGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWG----------------------- 254
            GYA+ G    A ++F ++       N+V+  +++ G                       
Sbjct: 340 AGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILN 399

Query: 255 -------------------YSKDGDMEMAKLLFDRMPAK--TLVPWTIIISGYAEKGMAK 293
                              YSK    + A+ +FD +P K  ++V WT++I G A+ G A 
Sbjct: 400 LDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEAN 459

Query: 294 EAARLYDQMEEAG--LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT-NVCN 350
           EA  L+ QM +    + P+  T+   L ACA  G L  G ++HA + + RF+     V N
Sbjct: 460 EALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 519

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+DMY+K G +D A  VF+ M +++ VSW +++ G  MHG+GE+AL +F  M+  G  P
Sbjct: 520 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVP 579

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TFV VL AC+H+G +D+G+ YF  M +D+G++P  EHY CM+DLL R+GRL EA+ L
Sbjct: 580 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 639

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++ MP++P   +W  LL ACR +  VEL E   + L+ L+  + G+YT+LSNI+A    W
Sbjct: 640 IRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCW 699

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             VA +R  MK T  +K  G S V+       F   D  HP S+QIY ++  L + +K +
Sbjct: 700 KDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKAL 759

Query: 591 GH 592
           G+
Sbjct: 760 GY 761



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 165/565 (29%), Positives = 275/565 (48%), Gaps = 69/565 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL- 82
            H+CK+L   + +  Q++   L  DP     +IS          A+ V   +  P  H  
Sbjct: 36  FHQCKSLASAELIHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLH-PSSHTV 91

Query: 83  --YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N LIR  V         +++  MQ  G   D++T+PF+LKAC     F     +HA+
Sbjct: 92  FWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAV 151

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGG 197
           ++  G+  ++FV N L+  Y +CG      A+++F  M ER   D+VSWNS++A  ++GG
Sbjct: 152 VFASGFEWNVFVGNGLVSMYGRCG--AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 198 ELSEARRLFDEMPER-----DAVS-------------W---------------------- 217
           +   A ++F+ M E      DAVS             W                      
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 269

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK--- 274
           N ++D YAK G M  A ++FE++  +++VSW+ MV GYS+ G  + A  LF+++  +   
Sbjct: 270 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 329

Query: 275 -TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
             +V W+ +I+GYA++G+  EA  ++ QM   G +P+  TL+S+L+ CA +G L  G + 
Sbjct: 330 LNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKET 389

Query: 334 HASINKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWNAML 384
           H    K+    + N       V NAL+DMY+KC S   A ++F+ +  KD  +V+W  ++
Sbjct: 390 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 449

Query: 385 YGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
            G A HG+  +AL LFS+M   D    P+ +T    L AC   G +  G Q    + R+ 
Sbjct: 450 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 509

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
                +    C+ID+  +SG + +A R+V     + N + W +L+     H   E A ++
Sbjct: 510 FESAMLFVANCLIDMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQI 568

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAAT 527
              + ++ G  P   T +  ++A +
Sbjct: 569 FYEMQKV-GLVPDGVTFVVVLYACS 592


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 185/596 (31%), Positives = 329/596 (55%), Gaps = 15/596 (2%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDL--QRDPYIAPKLISSLALCRQMGLAI 69
           S + L++  ++N  + K+ +Q KQL AQ I+          I   + ++L L  +   A+
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHE---AL 59

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            VF  ++ P V  + ++IR     SL ++A   F++M+  G   D+  +P +LK+C    
Sbjct: 60  LVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMM 119

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
                + +H  I + G   D++  N+L++ YSK  ++G+   +K+F  M  +D+VS+N++
Sbjct: 120 DLRFGESVHGFIVRLGMDCDLYTGNALMNMYSK--LLGIDSVRKVFELMPRKDVVSYNTV 177

Query: 190 IAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           IAG  + G   +A R+  EM   D    A + +++L  +++  ++    E+   +  + I
Sbjct: 178 IAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGI 237

Query: 246 VS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            S     S++V  Y+K   +E ++ +F  +  +  + W  +++GY + G   EA RL+ Q
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQ 297

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M  A ++P      S++ ACA    L LG ++H  + +  F  N  + +ALVDMY+KCG+
Sbjct: 298 MVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGN 357

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +  A  +F+ M   D VSW A++ G A+HG G +A+ LF  MK +G  P++  FV VL A
Sbjct: 358 IQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTA 417

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H G +D+   YF SM + YG+  ++EHY  + DLLGR+G+L+EA   +  M VEP   
Sbjct: 418 CSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGS 477

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W TLL +C  H  +ELAE+V + +  +   + G Y ++ N++A+ G W ++A +RL+++
Sbjct: 478 VWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVR 537

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           K   +K    S +E+ N+ H F   D+ HP  ++I + +  + + ++  G+ A  S
Sbjct: 538 KKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTS 593


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 319/584 (54%), Gaps = 13/584 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C  L   +++     KL  Q + ++A  LI   +     G+A  +F+D+   D+  +
Sbjct: 225 LKACGTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSW 284

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I   +QN   AQA  V  +M+ +G+  +  T   +L  C          +IH  + K
Sbjct: 285 NAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK 344

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+FV N+LI+ Y+K G   +  A+K F  M   D+VSWNS+IA   +  +   A 
Sbjct: 345 HGLEFDLFVSNALINMYAKFG--NLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAH 402

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWG 254
             F +M     + D ++  ++    A++ +   +  +   I  R     ++V  + +V  
Sbjct: 403 GFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDM 462

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGT 313
           Y+K G ++ A  +F+ +  K ++ W  +I+GYA+ G+A EA  +Y  MEE   + P+ GT
Sbjct: 463 YAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGT 522

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +SIL A A  G L  GM++H  + K     +  V   L+D+Y KCG L +AMS+F  + 
Sbjct: 523 WVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP 582

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           ++  V+WNA++    +HG  EK L LF  M DEG  PD  TFV +L AC+H+GF+++G +
Sbjct: 583 QESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEG-K 641

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           + + + ++YGI P ++HYGCM+DLLGR+G L+ A   ++ MP++P+A IWG LLGACR H
Sbjct: 642 WCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIH 701

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +EL +   D L  +   + G Y +LSNI+A  G W  V  VR   ++   +K  G S+
Sbjct: 702 GNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWST 761

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +EV+ +V  F   +Q HPK ++IY+ +  L   +K +G+    S
Sbjct: 762 IEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYS 805



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 191/404 (47%), Gaps = 27/404 (6%)

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
             + +HAL+   G    IF+   L++ Y+  G   VSL++  F  + ++D+ +WNSMI+ 
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLG--DVSLSRCTFDQIPQKDVYTWNSMISA 191

Query: 193 LVKGGELSEARRLFDEMPERDAV------------SWNTILDG-YAKAGEMNLAFELFEK 239
            V  G   EA   F ++     +            +  T++DG         L F+    
Sbjct: 192 YVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQW--- 248

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
               N+   ++++  YS+ G   +A+ LFD MP + +  W  +ISG  + G A +A  + 
Sbjct: 249 ----NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVL 304

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           D+M   G+K +  T++SIL  C + G +   M +H  + K+  + +  V NAL++MYAK 
Sbjct: 305 DEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKF 364

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV- 418
           G+L++A   F  M   D+VSWN+++     +     A G F +M+  GF PD  T V + 
Sbjct: 365 GNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLA 424

Query: 419 -LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
            + A +      + V  F  M R + ++  V     ++D+  + G L  A ++ + + V+
Sbjct: 425 SIVAQSRDCKNSRSVHGFI-MRRGW-LMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVK 482

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            + I W TL+    ++     A EV   +   K   P   T +S
Sbjct: 483 -DVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 525


>gi|356564579|ref|XP_003550529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Glycine max]
          Length = 576

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/555 (34%), Positives = 305/555 (54%), Gaps = 41/555 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-----RQMG-LAIKVFNDIQD 77
           + KC  + Q KQ+ A I+   +    ++ P LI  + L      R M   A  + + +  
Sbjct: 10  MKKCSTVKQAKQIHAHIL---INGFTFLRPLLIHRMLLWDVTNYRTMANYAYSMLHHLHI 66

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           PD   +  +IR   Q  L  +A  +++ M    +   +      LK+C   +       I
Sbjct: 67  PDSFSWGCVIRFFSQKCLFTEAVSLYVQMHRTSLCPTSHAVSSALKSCARIHDMLCGMSI 126

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL--------------------------- 170
           H  ++  G+   ++V  +L+D YSK G +G +                            
Sbjct: 127 HGQVHVFGFNTCVYVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGNL 186

Query: 171 --AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
             A+ LF  +  +D++SWNSMI+G  K G + +A  LF  MPER+  SWN ++ G+   G
Sbjct: 187 DEAQYLFSEIPGKDVISWNSMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFIDCG 246

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
            +  A E F+ +P RN VSW TM+ GYSK GD++ A+ LFD+M  K L+ +  +I+ YA+
Sbjct: 247 SLVSAREFFDTMPRRNCVSWITMIAGYSKGGDVDSARKLFDQMDHKDLLSYNAMIACYAQ 306

Query: 289 KGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
               KEA  L++ M  ++  + PD  TL S+++AC++ G L     + + +N +    + 
Sbjct: 307 NSKPKEALELFNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDD 366

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           ++  AL+D+YAKCGS+D A  +F+ + K+DLV+++AM+YG  ++G+   A+ LF +M  E
Sbjct: 367 HLATALIDLYAKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAE 426

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
             GP+  T+ G+L A  HAG ++KG Q F SM +DYG++P ++HYG M+DL GR+G L E
Sbjct: 427 CIGPNLVTYTGLLTAYNHAGLVEKGYQCFNSM-KDYGLVPSIDHYGIMVDLFGRAGYLDE 485

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A +L+ +MP++PNA +WG LL ACR HN VEL E  +   I+L+    G  ++LS+I+A 
Sbjct: 486 AYKLILNMPMQPNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCSLLSSIYAT 545

Query: 527 TGDWNKVANVRLQMK 541
              W+    +R  M+
Sbjct: 546 VEKWDDAKKLRKGME 560



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 101/435 (23%), Positives = 178/435 (40%), Gaps = 105/435 (24%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
           Y+   L+   +    MG A KVF+++ +  V  +N+L+   V+     +A  +F ++  K
Sbjct: 140 YVQTALLDLYSKIGDMGTARKVFDEMANKSVVSWNSLLSGYVKAGNLDEAQYLFSEIPGK 199

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQ------------MIHALIYKCG-------YFGDI 150
            V + N       KA N      L Q            MI   I  CG       +F  +
Sbjct: 200 DVISWNSMISGYAKAGNVGQACTLFQRMPERNLSSWNAMIAGFI-DCGSLVSAREFFDTM 258

Query: 151 FVPN-----SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              N     ++I  YSK G   V  A+KLF  M  +D++S+N+MIA   +  +  EA  L
Sbjct: 259 PRRNCVSWITMIAGYSKGG--DVDSARKLFDQMDHKDLLSYNAMIACYAQNSKPKEALEL 316

Query: 206 FDEMPERDAV----------------------SW-------------------NTILDGY 224
           F++M ++D                         W                     ++D Y
Sbjct: 317 FNDMLKQDIYVHPDKMTLASVISACSQLGDLEHWWWIESHMNDFGIVLDDHLATALIDLY 376

Query: 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TLVPWT 280
           AK G ++ A+ELF  +  R++V++S M++G   +G    A  LF++M A+     LV +T
Sbjct: 377 AKCGSIDKAYELFHNLRKRDLVAYSAMIYGCGINGKASDAIKLFEQMLAECIGPNLVTYT 436

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPD---DGTLISILAACA--------------- 322
            +++ Y   G+ ++  + ++ M++ GL P     G ++ +                    
Sbjct: 437 GLLTAYNHAGLVEKGYQCFNSMKDYGLVPSIDHYGIMVDLFGRAGYLDEAYKLILNMPMQ 496

Query: 323 -ESGLLG---LGMKVHASIN------KYRFKCNTNV---CNALVDMYAKCGSLDNAMSVF 369
             +G+ G   L  ++H ++       ++  K  T+    C+ L  +YA     D+A  + 
Sbjct: 497 PNAGVWGALLLACRLHNNVELGEIAVQHCIKLETDTTGYCSLLSSIYATVEKWDDAKKLR 556

Query: 370 NGMTKKDLV--SWNA 382
            GM  KD    SW +
Sbjct: 557 KGMEGKDFTGCSWTS 571


>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/460 (37%), Positives = 269/460 (58%), Gaps = 43/460 (9%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEM----------------------PERDAVSWNT- 219
           IVSW + IA   K G L +A   F +M                      P R ++S+ T 
Sbjct: 56  IVSWTTSIADYCKSGHLVKAASKFVQMREAAIEPNHITFITLLSACAHYPSRSSISFGTA 115

Query: 220 --------------------ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
                               ++D YAK G +  A   F+++  RN+VSW+TM+ GY ++G
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
             E A  +FD +P K  + WT +I G+ +K   +EA   + +M+ +G+ PD  T+I+++A
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA  G LGLG+ VH  +    F+ N  V N+L+DMY++CG +D A  VF+ M ++ LVS
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCIDLARQVFDRMPQRTLVS 295

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+++ G A++G  ++AL  F+ M++EGF PD  ++ G L AC+HAG I +G++ F  M+
Sbjct: 296 WNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEHMK 355

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           R   ILP++EHYGC++DL  R+GRL+EAL ++++MP++PN +I G+LL ACR    + LA
Sbjct: 356 RVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMKPNEVILGSLLAACRTQGNIGLA 415

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E V++ LI L      NY +LSNI+AA G W+    VR +MK+   QK  G SS+E+D+ 
Sbjct: 416 ENVMNYLIELDSGGDSNYVLLSNIYAAVGKWDGANKVRRRMKERGIQKKPGFSSIEIDSS 475

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAE 599
           +H+F   D+ H + + IY  +  L  +L+  G+    S +
Sbjct: 476 IHKFVSGDKSHEEKDHIYAALEFLSFELQLCGYIPDFSGK 515



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 173/354 (48%), Gaps = 47/354 (13%)

Query: 66  GLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           GL+++      DP V    ++   C    L  +A   F+ M+E  +  ++ T+  LL AC
Sbjct: 43  GLSLRHTTKYNDPIVSWTTSIADYCKSGHL-VKAASKFVQMREAAIEPNHITFITLLSAC 101

Query: 126 N---GKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
                ++       IHA + K G    D+ V  +LID Y+KCG   V  A+  F  MG R
Sbjct: 102 AHYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCG--RVESARLAFDQMGVR 159

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           ++VSWN+MI G ++ G+  +A ++FD +P ++A+SW  ++ G+ K      A E F ++ 
Sbjct: 160 NLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQ 219

Query: 242 ------------------------------HR---------NIVSWSTMVWGYSKDGDME 262
                                         HR         N+   ++++  YS+ G ++
Sbjct: 220 LSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGCID 279

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           +A+ +FDRMP +TLV W  II G+A  G+A EA   ++ M+E G KPD  +    L AC+
Sbjct: 280 LARQVFDRMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACS 339

Query: 323 ESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
            +GL+G G+++   + +  R          LVD+Y++ G L+ A++V   M  K
Sbjct: 340 HAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEALNVLKNMPMK 393



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 152/378 (40%), Gaps = 68/378 (17%)

Query: 36  LFAQIIKLDLQ-RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN- 93
           + A + KL L   D  +   LI   A C ++  A   F+ +   ++  +NT+I   ++N 
Sbjct: 116 IHAHVRKLGLDINDVMVGTALIDMYAKCGRVESARLAFDQMGVRNLVSWNTMIDGYMRNG 175

Query: 94  ------------------------------SLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
                                           + +A   F +MQ  GV  D  T   ++ 
Sbjct: 176 KFEDALQVFDGLPVKNAISWTALIGGFVKKDYHEEALECFREMQLSGVAPDYVTVIAVIA 235

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC       L   +H L+    +  ++ V NSLID YS+CG   + LA+++F  M +R +
Sbjct: 236 ACANLGTLGLGLWVHRLVMTQDFRNNVKVSNSLIDMYSRCGC--IDLARQVFDRMPQRTL 293

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK 239
           VSWNS+I G    G   EA   F+ M E     D VS+   L   + AG +     +FE 
Sbjct: 294 VSWNSIIVGFAVNGLADEALSYFNSMQEEGFKPDGVSYTGALMACSHAGLIGEGLRIFEH 353

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
                                M+  + +  R+       +  ++  Y+  G  +EA  + 
Sbjct: 354 ---------------------MKRVRRILPRIEH-----YGCLVDLYSRAGRLEEALNVL 387

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M    +KP++  L S+LAAC   G +GL   V   + +     ++N    L ++YA  
Sbjct: 388 KNMP---MKPNEVILGSLLAACRTQGNIGLAENVMNYLIELDSGGDSNYV-LLSNIYAAV 443

Query: 360 GSLDNAMSVFNGMTKKDL 377
           G  D A  V   M ++ +
Sbjct: 444 GKWDGANKVRRRMKERGI 461


>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
 gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
          Length = 429

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 168/411 (40%), Positives = 265/411 (64%), Gaps = 9/411 (2%)

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           C    D+   N++I  Y KCG   +  AK++F  M  R+ VSW++M+ G    GEL  AR
Sbjct: 18  CAGVADVVSWNTVIGGYVKCG--EMESAKRVFDEMPRRNGVSWSTMVGGYAAAGELDVAR 75

Query: 204 RLFDEMPE--RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
            +FD MP   R+ V+WN+++ G+A+ G + LA ++F+++P RN+VSW+ M+ GYS + DM
Sbjct: 76  EMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDM 135

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAA 320
           + A+ LFD MP K +V WT +ISGYA+ G  ++   L+  M+ E+ ++P++ T++S+L+A
Sbjct: 136 DGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSA 195

Query: 321 CAESGLLGLGMKVHASINKYRFKCNT--NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           CA    L  G  VHA I+K++   N   N+  AL+DMYAKCG  D A+ +FN + +K++ 
Sbjct: 196 CANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRKNVS 255

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +WNA++  LAM+G    ++  F +MK  G  P+  TFVGVL AC+H G +D+G + F SM
Sbjct: 256 AWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSM 315

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
               G+ P+V+HYGCM+D+LGR+G L+EA  L++SMP+ P+ +++G LLGACR H   ++
Sbjct: 316 ASTCGVQPEVKHYGCMVDMLGRAGLLEEAEELIRSMPMAPDVMVFGALLGACRMHKRFDV 375

Query: 499 AEEVLDCL--IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           AE V   +  + L     G + ++S+I+AA G W  V   R  ++++  +K
Sbjct: 376 AERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGIRK 426



 Score = 43.5 bits (101), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 26/244 (10%)

Query: 24  LHKCKNLNQTKQ-----LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           L  C NL   ++      F    K+ L  +  +   LI   A C +  +A+K+FN +   
Sbjct: 193 LSACANLTALEEGRWVHAFIDKHKMVLNNEYNLGAALIDMYAKCGRTDIAVKIFNSLDRK 252

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWF 131
           +V  +N LI     N     +   F  M+  G   ++ T+  +L AC+       G+  F
Sbjct: 253 NVSAWNALITRLAMNGNARDSVDAFEQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCF 312

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMI 190
                  ++   CG   ++     ++D   + G+  +  A++L  SM    D++ + +++
Sbjct: 313 ------QSMASTCGVQPEVKHYGCMVDMLGRAGL--LEEAEELIRSMPMAPDVMVFGALL 364

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNT-----ILDGYAKAGEMNLAFELFEKIPHRNI 245
                      A R+  E+   +  +  +     I D YA AG+     E  + +    I
Sbjct: 365 GACRMHKRFDVAERVQSEIHSLNLNAQQSGCHVLISDIYAAAGKWFDVLEARQVVQRSGI 424

Query: 246 VSWS 249
             W+
Sbjct: 425 RKWT 428


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/583 (33%), Positives = 314/583 (53%), Gaps = 14/583 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N++  +Q+ A ++++  ++D + A  L+       ++ +A  +F  + D DV  +N LI
Sbjct: 123 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 182

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV N  + +A  + L M+  G+  + F    +LKAC G   F L + IH  + K    
Sbjct: 183 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD 242

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D ++   L+D Y+K   +    A K+F  M  RD++ WN++I+G   GG   EA  +F 
Sbjct: 243 SDDYIGVGLVDMYAKNHFL--DDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFY 300

Query: 208 EMPERDAVSWNTILDGYAK-------AGEMNLAFELFEKIP---HRNIVSWSTMVWGYSK 257
            + +       T L    K       A        L EKI      ++V+   ++  Y K
Sbjct: 301 GLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN--GLIDSYWK 358

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
              +  A  +F+   +  ++  T +I+  ++    + A +L+ +M   GL+PD   L S+
Sbjct: 359 CSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 418

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA       G +VHA + K +F  +    NALV  YAKCGS+++A   F+ + ++ +
Sbjct: 419 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 478

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSW+AM+ GLA HG G++AL LF RM DEG  P+  T   VLCAC HAG +D+  +YF S
Sbjct: 479 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 538

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M+  +GI    EHY CMIDLLGR+G+L +A+ LV SMP + NA +WG LLGA R H   E
Sbjct: 539 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPE 598

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L +   + L  L+    G + +L+N +A++G WN+VA VR  MK +  +K    S VEV 
Sbjct: 599 LGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 658

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           ++VH F V D+ HP +++IY  ++ LG  +   G+   +  ++
Sbjct: 659 DKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDL 701



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 235/501 (46%), Gaps = 16/501 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQN 93
           Q+ A  +      D ++A  L++       M  A +VF++   + +   +N L+ A V+N
Sbjct: 28  QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 87

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                A +VF +M   G+    F +  ++ AC G       + +HA++ + GY  D+F  
Sbjct: 88  DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 147

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+D Y K G   V +A  +F  M + D+VSWN++I+G V  G    A  L  +M    
Sbjct: 148 NALVDMYVKMG--RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG 205

Query: 214 AVS----WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAK 265
            V      ++IL   A AG  +L  ++   +   N  S   +  G    Y+K+  ++ A 
Sbjct: 206 LVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAM 265

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD M  + L+ W  +ISG +  G   EA  ++  + + GL  +  TL ++L + A   
Sbjct: 266 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 325

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
                 +VHA   K  F  + +V N L+D Y KC  L +A+ VF   +  D+++  +M+ 
Sbjct: 326 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 385

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
            L+    GE A+ LF  M  +G  PD +    +L AC      ++G Q + + ++R +  
Sbjct: 386 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-- 443

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +        ++    + G +++A     S+P E   + W  ++G   +H   + A E+  
Sbjct: 444 MSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFG 502

Query: 505 CLIRLKGSDPGNYTMLSNIFA 525
            ++  +G +P + TM S + A
Sbjct: 503 RMVD-EGINPNHITMTSVLCA 522



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    +  + T+Q+ A   K+    D ++   LI S   C  +  AI+VF 
Sbjct: 311 RTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFE 370

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +    D+    ++I A  Q      A ++F++M  KG+  D F    LL AC   + +  
Sbjct: 371 ECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 430

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D F  N+L+ +Y+KCG   +  A+  F S+ ER +VSW++MI GL
Sbjct: 431 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCG--SIEDAELAFSSLPERGVVSWSAMIGGL 488

Query: 194 VKGGE-----------------------------------LSEARRLFDEMPE-----RD 213
            + G                                    + EA+R F+ M E     R 
Sbjct: 489 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 548

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              ++ ++D   +AG+++ A EL   +P + N   W  ++       D E+ KL    LF
Sbjct: 549 EEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLF 608

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  E A++   M+++ +K +
Sbjct: 609 ILEPEKSGTH-VLLANTYASSGMWNEVAKVRKLMKDSNIKKE 649



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 15/204 (7%)

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-GMTKKDLVSWNAMLYGL 387
           LG +VHA      F  +  V NALV MY   G +D+A  VF+   ++++ VSWN ++   
Sbjct: 25  LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 84

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
             + Q   A+ +F  M   G  P ++ F  V+ ACT +  ID G Q  ++M    G    
Sbjct: 85  VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQ-VHAMVVRMGYEKD 143

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC----RKHNAVELAEEVL 503
           V     ++D+  + GR+  A  + + MP + + + W  L+  C      H A+EL     
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVLNGHDHRAIEL----- 197

Query: 504 DCLIRLKGSD-PGNYTMLSNIFAA 526
             L+++K S    N  MLS+I  A
Sbjct: 198 --LLQMKSSGLVPNVFMLSSILKA 219


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/560 (34%), Positives = 309/560 (55%), Gaps = 29/560 (5%)

Query: 53  PKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVF 112
            KLI S A    +  A +VF+      V  +N +I A  +     +A  ++  M  +GV 
Sbjct: 43  AKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRGAMFEALSLYHRMASEGVR 102

Query: 113 TDNFTYPFLLKACNG--------KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
            D+ TY  +LKAC          + W   V          GY  D+FV  ++++ Y+KCG
Sbjct: 103 PDSSTYTVVLKACTRSLDLRSGEETWRQAVDQ--------GYGDDVFVGAAVLNLYAKCG 154

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGY 224
              +  A ++F  MG RD+V W +MI GL + G+  EA  ++ +M ++       ++ G 
Sbjct: 155 --KMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGL 212

Query: 225 AKA------GEMNLAFE--LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
            +A       +M L+    +  K    +++  +++V  Y+K+G +E+A  +F RM  K +
Sbjct: 213 IQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNV 272

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           + W+ +ISG+A+ G A  A +L   M+  G KPD  +L+S+L AC++ G L LG  VH  
Sbjct: 273 ISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGY 332

Query: 337 I-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
           I  +  F C ++   A++DMY+KCGSL  A +VF+ ++ +D +SWNA++    +HG GE+
Sbjct: 333 IVRRLHFDCVSS--TAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEE 390

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           AL LF +M++    PD  TF  +L A +H+G ++KG  +F  M  +Y I P  +HY CM+
Sbjct: 391 ALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMV 450

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           DLL R+GR++EA  L++SM  EP   IW  LL  C  H    + E     ++ L   DPG
Sbjct: 451 DLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELNPDDPG 510

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
            Y+++SN FA    W++VA VR  MKKT  +K  G S +EV+ ++H F + D+ H + E+
Sbjct: 511 IYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSHHQYEE 570

Query: 576 IYQMINTLGKDLKPVGHAAK 595
           I Q++  L  ++K +G+  K
Sbjct: 571 IMQVLGKLDYEMKAMGYVPK 590



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/412 (26%), Positives = 201/412 (48%), Gaps = 30/412 (7%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           +  IHAL+   G FG       LI SY++ G   +  A+++F    +  + +WN+MI   
Sbjct: 23  IAKIHALMILTGIFGHGNSNAKLIQSYARLG--HIESARQVFDKSPQCGVDAWNAMIIAY 80

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NI 245
            + G + EA  L+  M       D+ ++  +L    ++ ++    E + +   +    ++
Sbjct: 81  SRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDV 140

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              + ++  Y+K G M+ A  +FD+M  + LV WT +I+G A+ G A+EA  +Y QM + 
Sbjct: 141 FVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKK 200

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            ++ D   ++ ++ AC   G   +G+ +H  + +     +  V  +LVDMYAK G L+ A
Sbjct: 201 RVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELA 260

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF  M  K+++SW+A++ G A +G    AL L   M+  G+ PD  + V VL AC+  
Sbjct: 261 SCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQV 320

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGC-----MIDLLGRSGRLKEALRLVQSMPVEPNA 480
           GF+  G       +  +G + +  H+ C     +ID+  + G L  A  +   +    ++
Sbjct: 321 GFLKLG-------KSVHGYIVRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFR-DS 372

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATG 528
           I W  ++ +   H +    EE L   ++++ +    D   +  L + F+ +G
Sbjct: 373 ISWNAIIASYGIHGS---GEEALSLFLQMRETNVKPDHATFASLLSAFSHSG 421



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 183/373 (49%), Gaps = 11/373 (2%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   ++ + Q +      D ++   +++  A C +M  A++VF+ +   D+  + T+I 
Sbjct: 120 DLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMIT 179

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN    +A  ++  M +K V  D      L++AC       +   IH  + +     
Sbjct: 180 GLAQNGQAREAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIM 239

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+ V  SL+D Y+K G   + LA  +F  M  ++++SW+++I+G  + G    A +L  +
Sbjct: 240 DVIVQTSLVDMYAKNG--HLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVD 297

Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR---NIVSWSTMVWGYSKDGDM 261
           M     + D+VS  ++L   ++ G + L   +   I  R   + VS + ++  YSK G +
Sbjct: 298 MQSFGYKPDSVSLVSVLLACSQVGFLKLGKSVHGYIVRRLHFDCVSSTAVIDMYSKCGSL 357

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A+ +FD++  +  + W  II+ Y   G  +EA  L+ QM E  +KPD  T  S+L+A 
Sbjct: 358 SFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAF 417

Query: 322 AESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
           + SGL+  G       +N+Y+ + +      +VD+ ++ G ++ A  +   M T+  +  
Sbjct: 418 SHSGLVEKGRYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAI 477

Query: 380 WNAMLYGLAMHGQ 392
           W A+L G   HG+
Sbjct: 478 WVALLSGCLNHGK 490


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 308/573 (53%), Gaps = 11/573 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   + + AQ+    L  +   A  L +  A CR+ G A +VF+ +   D   +N L+ 
Sbjct: 240 DLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVA 299

Query: 89  ACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              +N L   A  + + MQE+ G   D  T   +L AC         + +HA   + G+ 
Sbjct: 300 GYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFD 359

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             + V  +++D Y KCG   V  A+K+F  M +R+ VSWN+MI G  + G+ +EA  LF 
Sbjct: 360 EQVNVSTAILDVYCKCG--AVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFK 417

Query: 208 EMP-ERDAVSWNTILDGYAKAGEMNL------AFELFEKIP-HRNIVSWSTMVWGYSKDG 259
            M  E   V+  ++L      GE+          EL  +I    N+   + ++  Y K  
Sbjct: 418 RMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCK 477

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
             ++A  +FD +  KT V W  +I G  + G +++A RL+ +M+   +KPD  TL+SI+ 
Sbjct: 478 RTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIP 537

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           A A+         +H    +     +  V  AL+DMYAKCG +  A S+FN    + +++
Sbjct: 538 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVIT 597

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNAM++G   HG G+ A+ LF  MK  G  P++ TF+ VL AC+HAG +D+G +YF SM+
Sbjct: 598 WNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMK 657

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DYG+ P +EHYG M+DLLGR+G+L EA   +Q MP+EP   ++G +LGAC+ H  VELA
Sbjct: 658 EDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELA 717

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           EE    +  L+  +   + +L+NI+A    W  VA VR  M+K   QK  G S V++ NE
Sbjct: 718 EESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNE 777

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +H F      H +++ IY  +  L +++K VG+
Sbjct: 778 IHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGY 810



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 135/431 (31%), Positives = 207/431 (48%), Gaps = 36/431 (8%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T+  LLK C  +      + +HA +   G   +     +L + Y+KC   G   A+++F 
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD--ARRVFD 284

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEAR-----RLFDEMPER-DAVSWNTILDGYAKAGEM 230
            M  RD V+WN+++AG  + G L+EA      R+ +E  ER DAV+  ++L   A A  +
Sbjct: 285 RMPARDRVAWNALVAGYARNG-LAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQAL 343

Query: 231 NLAFELFE---KIPHRNIVSWSTMVWG-YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
               E+     +      V+ ST +   Y K G ++ A+ +FD M  +  V W  +I GY
Sbjct: 344 GACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGY 403

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           AE G A EA  L+ +M   G+   D ++++ L AC E G L  G +VH  + +   + N 
Sbjct: 404 AENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESNV 463

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           NV NAL+ MY KC   D A  VF+ +  K  VSWNAM+ G   +G  E A+ LFSRM+ E
Sbjct: 464 NVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLE 523

Query: 407 GFGPDKYTFVGVLCACT------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
              PD +T V ++ A         A +I  G      +++D  +L        +ID+  +
Sbjct: 524 NVKPDSFTLVSIIPALADISDPLQARWI-HGYSIRLHLDQDVYVLTA------LIDMYAK 576

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN----AVELAEEVLDCLIRLKGSDPGN 516
            GR+  A  L  S   + + I W  ++     H     AVEL EE     ++  G  P  
Sbjct: 577 CGRVSIARSLFNSAR-DRHVITWNAMIHGYGSHGSGKVAVELFEE-----MKSSGKVPNE 630

Query: 517 YTMLSNIFAAT 527
            T LS + A +
Sbjct: 631 TTFLSVLSACS 641



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 3/184 (1%)

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
           +G  P   T  S+L  CA    L  G  VHA +             AL +MYAKC    +
Sbjct: 219 SGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGD 278

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACT 423
           A  VF+ M  +D V+WNA++ G A +G  E A+G+  RM++E G  PD  T V VL AC 
Sbjct: 279 ARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACA 338

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
            A  +    +  ++     G   QV     ++D+  + G +  A ++   M  + N++ W
Sbjct: 339 DAQALG-ACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQ-DRNSVSW 396

Query: 484 GTLL 487
             ++
Sbjct: 397 NAMI 400


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 188/538 (34%), Positives = 300/538 (55%), Gaps = 14/538 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           A KVF+ +++ +V  +  +I    Q   N +A  +FL+M    G   D FT   L+  C 
Sbjct: 214 ARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCA 273

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
              +  L + +H+ + + G   D+ V  SL+D Y+KCG+V    A+K+F  M E +++SW
Sbjct: 274 EIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLV--QEARKVFDGMREHNVMSW 331

Query: 187 NSMIAGLVKGG--ELSEARRLFDEMPERDAVSWNTI-LDGYAKAGEMNLAFELFEKIPHR 243
            +++ G V+GG     EA R+F  M  +  V+ N     G  KA      F+  E++  +
Sbjct: 332 TALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQ 391

Query: 244 NI--------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
            I           + +V  Y+K G ME A+  FD +  K LV  T++     +       
Sbjct: 392 TIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSE 451

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             L  ++E  G      T  S+L+  A  G +G G ++HA + K  F+ + +V NAL+ M
Sbjct: 452 QDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISM 511

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y+KCG+ + A+ VFN M   ++++W +++ G A HG   KAL LF  M + G  P+  T+
Sbjct: 512 YSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTY 571

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           + VL AC+H G ID+  ++F SM  ++GI+P++EHY CM+DLLGRSG L EA+  + SMP
Sbjct: 572 IAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMP 631

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
            + +A++W T LG+CR H   +L E     ++  +  DP  Y +LSN++A  G W  VA 
Sbjct: 632 FDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAA 691

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           +R  MK+ +  K +G+S +EV+N+VH+F V D LHPK++QIY+ ++ L   +K VG+ 
Sbjct: 692 IRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYV 749



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 179/371 (48%), Gaps = 20/371 (5%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           T   LLK C      HL +++H  +       D  + NSLI  YSK      + +    M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN----------TILDGYAK 226
              +RD+VS++S+I+         +A  +FD++  +D V  N           +  G+ K
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 227 AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD---GDMEMAKLLFDRMPAKTLVPWTIII 283
            G     F L       ++     ++  + K     D+E A+ +FD+M  K +V WT++I
Sbjct: 174 TGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMI 233

Query: 284 SGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           +  A+ G   EA  L+ +M   +G  PD  TL  +++ CAE   L LG ++H+ + +   
Sbjct: 234 TRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGL 293

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG--EKALGLF 400
             +  V  +LVDMYAKCG +  A  VF+GM + +++SW A++ G    G G   +A+ +F
Sbjct: 294 VLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMF 353

Query: 401 SRMKDE-GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLL 458
           S M  + G  P+ +TF GVL AC      D G Q  +      G L  ++  G  ++ + 
Sbjct: 354 SNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQ-VHGQTIKLG-LSAIDCVGNGLVSVY 411

Query: 459 GRSGRLKEALR 469
            +SGR++ A +
Sbjct: 412 AKSGRMESARK 422



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 129/529 (24%), Positives = 235/529 (44%), Gaps = 30/529 (5%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-- 78
           L+   + KN +  K L  ++   +L  D  +   LI+  +       A  +F  +++   
Sbjct: 59  LKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKR 118

Query: 79  DVHLYNTLIRACVQNSLNA-QAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           DV  Y+++I +C  N+ N  +A  +F  +  + GV+ + + +  +++AC    +F     
Sbjct: 119 DVVSYSSII-SCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLC 177

Query: 137 IHALIYKCGYF-GDIFVPNSLIDSYSK-CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           +   + K GYF   + V   LID + K C +  +  A+K+F  M E+++V+W  MI  L 
Sbjct: 178 LFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLA 237

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW------ 248
           + G   EA  LF EM     VS   + D +   G +++  E+      + + SW      
Sbjct: 238 QYGYNDEAIDLFLEM----LVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGL 293

Query: 249 -------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE--KGMAKEAARLY 299
                   ++V  Y+K G ++ A+ +FD M    ++ WT +++GY     G  +EA R++
Sbjct: 294 VLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMF 353

Query: 300 DQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
             M  + G+ P+  T   +L ACA       G +VH    K        V N LV +YAK
Sbjct: 354 SNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAK 413

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
            G +++A   F+ + +K+LVS   +               L   ++  G G   +T+  +
Sbjct: 414 SGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASL 473

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L      G I KG Q  ++M    G    +     +I +  + G  + AL++   M  + 
Sbjct: 474 LSGAACIGTIGKGEQ-IHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDME-DC 531

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           N I W +++    KH     A E+   ++   G  P + T ++ + A +
Sbjct: 532 NVITWTSIINGFAKHGFASKALELFYNMLE-TGVKPNDVTYIAVLSACS 579



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 188/408 (46%), Gaps = 20/408 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  K+L + +I+  L  D  +   L+   A C  +  A KVF+ +++ +V  +  L+  
Sbjct: 278 LSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNG 337

Query: 90  CVQ--NSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
            V+       +A R+F +M  + GV  + FT+  +LKAC     F   + +H    K G 
Sbjct: 338 YVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGL 397

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
                V N L+  Y+K G   +  A+K F  + E+++VS   +    VK   L+  + L 
Sbjct: 398 SAIDCVGNGLVSVYAKSG--RMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLD 455

Query: 207 DEM----PERDAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSWST-MVWGYSKD 258
            E+        + ++ ++L G A  G +    ++     KI  R  +S +  ++  YSK 
Sbjct: 456 REVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKC 515

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G+ E A  +F+ M    ++ WT II+G+A+ G A +A  L+  M E G+KP+D T I++L
Sbjct: 516 GNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVL 575

Query: 319 AACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKD 376
           +AC+  GL+    K   S+ + +           +VD+  + G L  A+   N M    D
Sbjct: 576 SACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDAD 635

Query: 377 LVSWNAMLYGLAMHGQ---GEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
            + W   L    +H     GE A  +   ++ E   P  Y  +  L A
Sbjct: 636 ALVWRTFLGSCRVHRNTKLGEHAAKMI--LEREPHDPATYILLSNLYA 681



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 61/300 (20%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +Q+ A ++K+  + D  +   LIS  + C     A++VFND++D +V  + ++I  
Sbjct: 483 IGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIING 542

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             ++   ++A  +F +M E GV  ++ TY  +L AC+     H+                
Sbjct: 543 FAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACS-----HV---------------- 581

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV-----SWNSMIAGLVKGGELSEARR 204
                 LID            A K F SM +   +      +  M+  L + G LSEA  
Sbjct: 582 -----GLIDE-----------AWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIE 625

Query: 205 LFDEMP-ERDAVSWNTILDG-----YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
             + MP + DA+ W T L         K GE + A  + E+ PH +  ++  +   Y+ +
Sbjct: 626 FINSMPFDADALVWRTFLGSCRVHRNTKLGE-HAAKMILEREPH-DPATYILLSNLYATE 683

Query: 259 GDMEMAKLLFDRMPAKTLV-----PWTIIISGYAEK-----GMAKEAARLYDQMEEAGLK 308
           G  E    +   M  K +       W I +     K      +  +A ++Y++++E  LK
Sbjct: 684 GRWEDVAAIRKNMKQKQITKEAGSSW-IEVENQVHKFHVGDTLHPKAQQIYEKLDELALK 742


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 183/555 (32%), Positives = 299/555 (53%), Gaps = 40/555 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F+ +  P   L +T + +  + S +    + F  M  KG +  +   P + K+C  
Sbjct: 23  ARNLFDAVPRPAPALCSTFLSSLSRASSHHDLLQTFSSMHRKGAYVPSGCVPLVFKSCAL 82

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  + +H      G  GD+FV  +L+D Y+K G   +  A   F  M  +D +  N
Sbjct: 83  TASSCQGRQVHCHALVRGLLGDVFVLTALVDFYAKNG--DMESAVSAFDEMPVKDPIPIN 140

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHR 243
            +I G  K G++ +ARRLFD M  R + SWN+++  YA  GE   A  LF+++       
Sbjct: 141 CLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSEGARP 200

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLL----------------------------------FD 269
           N ++ +++    +K GD++  K +                                  FD
Sbjct: 201 NAITITSVFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFD 260

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           RM  + +V W+ +I+GYA+ G   E+  L+++M+    +P++ TL+ +++ACA+ G   L
Sbjct: 261 RMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDEL 320

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             ++       R    + + +AL+DMY +CG +  A SVF+ M +K +++WN+M+ GLAM
Sbjct: 321 VEQIGNYAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAM 380

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G  E A+ L+ +M + G  P++ TFV +L ACTHAG +D+G+ +F  M+R++ + PQVE
Sbjct: 381 NGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVE 440

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           H  C++DLL +SG L EA + +  M VEPNA+IW TLL +CR H  VELA+     L+ +
Sbjct: 441 HCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAM 500

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  +   Y +LSNI+A  G W     +R  M+    QK S  S +++D EVH+F V D  
Sbjct: 501 EPDNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWIKLDGEVHKFLVQDTY 560

Query: 570 HPKSEQIYQMINTLG 584
           HP+S +IY +I+ LG
Sbjct: 561 HPRSAEIYDVIHGLG 575



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 148/317 (46%), Gaps = 22/317 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L+  K++   I + DLQ +  +   L+     CR +  A + F+ +   DV  ++T
Sbjct: 214 KSGDLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDARREFDRMSQRDVVAWST 272

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN    ++  +F  M+      +  T   ++ AC       LV+ I        
Sbjct: 273 MIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNYAENQR 332

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                ++ ++LID Y++CG VG   A+ +F  M ++ +++WNSMI GL   G   +A  L
Sbjct: 333 LPLTSYLGSALIDMYTRCGHVG--RARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISL 390

Query: 206 FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYS 256
           +++M E     + +++  +L     AG ++     FE++   ++VS      + +V    
Sbjct: 391 YEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLLC 450

Query: 257 KDGDM-EMAKLLFDRMPAKTLVPWTIIIS---GYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           K G + E  K + D       V WT ++S    +A+  +AK A+R    ME     PD+ 
Sbjct: 451 KSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLAME-----PDNS 505

Query: 313 TLISILAAC-AESGLLG 328
           ++  +L+   A++GL G
Sbjct: 506 SIYVLLSNIYADAGLWG 522



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 30/226 (13%)

Query: 46  QRDP---YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           QR P   Y+   LI     C  +G A  VF+ ++   V  +N++IR    N     A  +
Sbjct: 331 QRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITWNSMIRGLAMNGFAEDAISL 390

Query: 103 FLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHAL---IYKCGYFGDIFV 152
           +  M E GV  +  T+  LL AC        G  +F  ++  H +   +  C    D+  
Sbjct: 391 YEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFEEMKREHLVSPQVEHCACIVDLL- 449

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEA----RRLFD 207
                     C   G+  A K    M  E + V W ++++      ++  A    R+L  
Sbjct: 450 ----------CKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADVELAKLASRKLLA 499

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
             P+  ++ +  + + YA AG    A E+ + +  +N+   S   W
Sbjct: 500 MEPDNSSI-YVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSW 544


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 297/538 (55%), Gaps = 13/538 (2%)

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           LA KVF+ + + D  L+NT+I    +NS    + RVF+DM + G+  D+ T   +L A  
Sbjct: 166 LARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
               + L   I  L  K G   D++V   LI  YSKCG       + LF  + + D++S+
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG--KSCKGRILFDQIDQPDLISY 283

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG----YAKAGEMNLAFELFEKIPH 242
           N+MI+G     E   A  LF E+        ++ L G    Y     + L+  L + +  
Sbjct: 284 NAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLS-RLIQNLSL 342

Query: 243 R-NIV---SWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           +  I+   S ST +   Y +  +++ A+ LFD  P K+L  W  +ISGY + G+   A  
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+ +M    L P+  T+ SIL+ACA+ G L +G  VH  I   R + N  V  ALVDMYA
Sbjct: 403 LFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYA 461

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS+  A  +F+ M  K++V+WNAM+ G  +HG G++AL LF  M   G  P   TF+ 
Sbjct: 462 KCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLS 521

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           +L AC+H+G + +G + F+SM  +YG  P  EHY CM+D+LGR+G+L  AL  ++ MP+E
Sbjct: 522 ILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLE 581

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
           P   +WG LLGAC  H   E+A      L +L   + G Y +LSNI++   ++ K A+VR
Sbjct: 582 PGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVR 641

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
             +KK +  K  G + +E+D++ + F+  D+ HP++  I++M+  L   ++  G+ A+
Sbjct: 642 QVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAE 699



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 235/517 (45%), Gaps = 23/517 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L+    L+Q  Q+ AQ+I   +  D     KL         +    ++FN +  PD+ L+
Sbjct: 21  LNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLF 80

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           N LIR    N L   +  ++  +++K  +  DNFTY F + A +      +  ++HA   
Sbjct: 81  NVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSI 140

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
             G   ++FV ++++D Y K       LA+K+F  M ERD V WN+MI+G  +     ++
Sbjct: 141 VDGVASNLFVGSAIVDLYFK--FTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDS 198

Query: 203 RRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWG 254
            R+F +M +     D+ +  T+L   A+  E  L   +     +K  H ++   + ++  
Sbjct: 199 IRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISL 258

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           YSK G     ++LFD++    L+ +  +ISGY      + A  L+ ++  +G + +  TL
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           + ++        L L   +     K       +V  AL  +Y +   +  A  +F+   +
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K L SWNAM+ G   +G  ++A+ LF  M  +   P+  T   +L AC   G +  G ++
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KW 436

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH- 493
            + + +   +   V     ++D+  + G + EA +L   M V+ N + W  ++     H 
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHG 495

Query: 494 ---NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
               A++L  E+L       G  P   T LS ++A +
Sbjct: 496 HGKEALKLFYEMLQ-----SGIPPTGVTFLSILYACS 527



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 168/364 (46%), Gaps = 11/364 (3%)

Query: 42  KLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR 101
           K  L  D Y+   LIS  + C +      +F+ I  PD+  YN +I     N     A  
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 102 VFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           +F ++   G   ++ T   L+      N   L ++I  L  K G      V  +L   Y 
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY- 360

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER---DAVSWN 218
            C +  V  A++LF    E+ + SWN+MI+G  + G    A  LF EM  +   + V+  
Sbjct: 361 -CRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVT 419

Query: 219 TILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +IL   A+ G +++   +   I       N+   + +V  Y+K G +  A+ LFD M  K
Sbjct: 420 SILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV- 333
            +V W  +I+GY   G  KEA +L+ +M ++G+ P   T +SIL AC+ SGL+  G ++ 
Sbjct: 480 NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF 539

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ 392
           H+  N Y F+  +     +VD+  + G L NA+     M  +     W A+L    +H  
Sbjct: 540 HSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKN 599

Query: 393 GEKA 396
            E A
Sbjct: 600 TEMA 603



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 134/309 (43%), Gaps = 11/309 (3%)

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           F L   N       +  I A +   G   D+     L   +   G   V+  ++LF  + 
Sbjct: 16  FFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLG--AVAHVRQLFNKVS 73

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
           + D+  +N +I G    G    +  L+  + ++  +  +     +A +    L  E    
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGV 133

Query: 240 IPH---------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + H          N+   S +V  Y K    E+A+ +FD MP +  V W  +ISG++   
Sbjct: 134 LLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             +++ R++  M + GL  D  TL ++L A AE     LGM +    +K     +  V  
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+ +Y+KCG       +F+ + + DL+S+NAM+ G   + + E A+ LF  +   G   
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 411 DKYTFVGVL 419
           +  T VG++
Sbjct: 314 NSSTLVGLI 322


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/585 (34%), Positives = 304/585 (51%), Gaps = 78/585 (13%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+ +   Q+ A +++  L   P +  KL  S A    +  ++ +F+   +P+V L+  +I
Sbjct: 34  KSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHII 93

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A     L   A   +  M    +  + FT   LLKAC      H  + +H+   K G  
Sbjct: 94  NAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIKFG-- 147

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
                                 L+  L++S G                            
Sbjct: 148 ----------------------LSSHLYVSTG---------------------------- 157

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
                       ++D YA+ G++  A +LF+ +P R++VS++ M+  Y+K G +  A++L
Sbjct: 158 ------------LVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVL 205

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-------LKPDDGTLISILAA 320
           F+ M  K +V W ++I GYA+ G   EA   + +M           ++P++ T++++L++
Sbjct: 206 FEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSS 265

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C + G L  G  VH+ +     K N  V  ALVDMY KCGSL++A  VF+ M  KD+V+W
Sbjct: 266 CGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAW 325

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N+M+ G  +HG  ++AL LF  M   G  P   TFV VL AC HAG + KG + F SM+ 
Sbjct: 326 NSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKD 385

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            YG+ P+VEHYGCM++LLGR+GR++EA  LV+SM VEP+ ++WGTLL ACR H+ V L E
Sbjct: 386 GYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGE 445

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
           E+ + L+    +  G Y +LSN++AA  +W  VA VR  MK +  +K  G SS+EV N V
Sbjct: 446 EIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRV 505

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA---EIGE 602
           HEF   D+ HP+S+ IY M+  +   LK   +  K  A   +IGE
Sbjct: 506 HEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGE 550



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/262 (21%), Positives = 107/262 (40%), Gaps = 44/262 (16%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L +L K   L+  + + +  IK  L    Y++  L+ + A    +  A K+F+ + +  +
Sbjct: 124 LSSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSL 183

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN------------------------- 115
             Y  ++    ++ +  +A  +F  M  K V   N                         
Sbjct: 184 VSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMM 243

Query: 116 -------------FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
                         T   +L +C         + +H+ +   G   ++ V  +L+D Y K
Sbjct: 244 MGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCK 303

Query: 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWN 218
           CG   +  A+K+F  M  +D+V+WNSMI G    G   EA +LF EM     +   +++ 
Sbjct: 304 CG--SLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFV 361

Query: 219 TILDGYAKAGEMNLAFELFEKI 240
            +L   A AG ++  +E+F+ +
Sbjct: 362 AVLTACAHAGLVSKGWEVFDSM 383


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/540 (35%), Positives = 297/540 (55%), Gaps = 43/540 (7%)

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV-QMIHALIYKCGYFGDIFVPNSLID 158
            RV++ M  +G   D +T+P LLKA         V   +HA + K G   +  V +SL+ 
Sbjct: 3   LRVYVGMLARGARPDAYTFPPLLKAVTAAAERGAVGDAVHAHVVKFGMELNAHVASSLVL 62

Query: 159 SYSKCG--VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE----- 211
            Y+  G   V  +L        G+  +V WN++I+G  +  +   +   F +M       
Sbjct: 63  MYAARGDGAVARTLLDAWPARGGDTPVV-WNALISGHRRSRQFRLSCCSFVDMVRTGVVP 121

Query: 212 -------------RDAVSW---------------------NTILDGYAKAGEMNLAFELF 237
                        +D   W                     N ++D YA+  EM+ A+ELF
Sbjct: 122 TPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVGNALIDMYAECSEMDAAWELF 181

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           E +  RN VSW++++ G+ + G ++ A+ LFD MP +  V WT +I GY + G  +EA  
Sbjct: 182 EGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALE 241

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           ++ +M+ + ++ D+ T++S++ ACA+ G L  G      ++++  K +T V NALVDMY+
Sbjct: 242 MFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYS 301

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS+  A+ VF  M  +D  +W A++ GLA++G GE+A+ +F RM      PD+ TF+G
Sbjct: 302 KCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIG 361

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           VL ACTHAG +DKG  +F SM   YGI P V H+GC+IDLLGR+G+LKEAL  + +MP+ 
Sbjct: 362 VLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMR 421

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
           PN+ IWGTLL ACR H   E+ +   + L+ L   +   Y +LSN++A +  W  V  +R
Sbjct: 422 PNSAIWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLR 481

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             + +   +K  G S +E++  +HEF   D+ HP S++IY  ++ +  DLK  G+   L+
Sbjct: 482 QVIMEKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAGYVPDLT 541



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 173/402 (43%), Gaps = 48/402 (11%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           A ++K  ++ + ++A  L+   A  R  G   +   D           +  A +     +
Sbjct: 43  AHVVKFGMELNAHVASSLVLMYA-ARGDGAVARTLLDAWPARGGDTPVVWNALISGHRRS 101

Query: 98  QAFRV----FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           + FR+    F+DM   GV     TY  +L AC    +  L   +H  +   G   D+ V 
Sbjct: 102 RQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKVG 161

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+LID Y++C    +  A +LF  M  R+ VSW S+I+G ++ G++ +AR LFD MPERD
Sbjct: 162 NALIDMYAECS--EMDAAWELFEGMEVRNTVSWTSVISGFLRLGQVDQARTLFDCMPERD 219

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----------------------WS-- 249
            VSW  ++DGY +AG+   A E+F ++    + +                      W+  
Sbjct: 220 TVSWTAMIDGYVQAGQFREALEMFREMQFSKVRADEFTMVSVVTACAQLGALETGEWARI 279

Query: 250 ---------------TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
                           +V  YSK G ++ A  +F  M  +    WT +I G A  G  +E
Sbjct: 280 YMSRHGIKMDTFVGNALVDMYSKCGSIQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEE 339

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALV 353
           A  ++ +M      PD+ T I +L AC  +GL+  G     S+   Y    N      L+
Sbjct: 340 AINMFYRMLRVFEAPDEVTFIGVLTACTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLI 399

Query: 354 DMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
           D+  + G L  A+     M  + +   W  +L    +HG  E
Sbjct: 400 DLLGRAGKLKEALETIGNMPMRPNSAIWGTLLAACRVHGNSE 441


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 194/552 (35%), Positives = 309/552 (55%), Gaps = 12/552 (2%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  ++  LI     C ++G+A  VF+ +   +V  +  L+   +QN    ++  +F  M 
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMG 65

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
             GV  ++FT+   LKAC   N   + + IH +  K G+     V NS+ID YSKCG   
Sbjct: 66  LSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCG--R 123

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE----RDAVSWNTILDG 223
           ++ A  +F  M  R+++SWN+MIAG    G   +A  LF +M E     D  ++ + L  
Sbjct: 124 INEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKA 183

Query: 224 YAKAGEMNLAFELFE-KIPHRNIVSWSTMVWG-----YSKDGDMEMAKLLFDRMPAKTLV 277
            +  G +    ++    I    + S +T V G     Y K G + MA+ +F  +  K ++
Sbjct: 184 CSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVI 243

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +I GYA++G   E+  L+ Q+ E+ ++ D   L S++   A+  L+  G ++HA  
Sbjct: 244 SWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFA 303

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K     + +VCN+++DMY KCG ++ A  +F+ M  ++++SW  M+ G   HG G++A+
Sbjct: 304 IKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAI 363

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF  M+ +   PD  T++ VL  C+H+G ++KG +YF  +   +GI  +VEHY CM+DL
Sbjct: 364 RLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDL 423

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+GRLKEA  LV SMP+E N  IW TLL ACR H  +EL +EV   L+RL   +P NY
Sbjct: 424 LGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNY 483

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            M+SNI+A  G W +   +R  +K  + +K +G S VE+D EVH F   D  HP +E+I+
Sbjct: 484 VMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIH 543

Query: 578 QMINTLGKDLKP 589
           +++  + + +K 
Sbjct: 544 EILKEMERRMKE 555



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 194/425 (45%), Gaps = 79/425 (18%)

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  D+ + N LI  Y KCG +GV  A  +F  M +R++VSW +++ G ++ G   E+  
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGV--ACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLL 59

Query: 205 LFDEMP---------------------------------------ERDAVSWNTILDGYA 225
           LF +M                                        +   V  N+I+D Y+
Sbjct: 60  LFSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYS 119

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           K G +N A  +FE +P RN++SW+ M+ GY+                          ++G
Sbjct: 120 KCGRINEAACMFEVMPVRNLISWNAMIAGYT--------------------------VAG 153

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI--NKYRFK 343
           + EK +      L+ +M+E G   D+ T  S L AC++ G +  G ++HA +    + + 
Sbjct: 154 FCEKALV-----LFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYS 208

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            NT V  AL+D+Y KCG L  A  VF+ + +K ++SW A++ G A  G   +++ LF ++
Sbjct: 209 VNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL 268

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           ++     D +    ++        + +G Q + ++++   G+   +     ++D+  + G
Sbjct: 269 RESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGV--DISVCNSILDMYLKCG 326

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
            + EA RL   MP   N I W  ++    KH   + A  + D  ++L  ++P + T L+ 
Sbjct: 327 MINEAERLFSEMPAR-NVISWTVMITGYGKHGLGKEAIRLFD-EMQLDSTEPDDVTYLAV 384

Query: 523 IFAAT 527
           +   +
Sbjct: 385 LLGCS 389



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 181/433 (41%), Gaps = 82/433 (18%)

Query: 23  NLHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           NL  C  LN     +Q+    +K        +   +I   + C ++  A  +F  +   +
Sbjct: 79  NLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRN 138

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           +  +N +I          +A  +F  MQE G F D FT+   LKAC+          IHA
Sbjct: 139 LISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHA 198

Query: 140 LIYKCGYFGDI--FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
            +   G+   +   V  +LID Y KCG   + +A+++F  + E+ ++SW ++I G  + G
Sbjct: 199 FLITGGFLYSVNTAVAGALIDLYVKCG--KLFMARRVFSHIEEKHVISWTALILGYAQEG 256

Query: 198 ELSEARRLFDEMPER---------------------------------------DAVSWN 218
            L+E+  LF ++ E                                        D    N
Sbjct: 257 NLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCN 316

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
           +ILD Y K G +N A  LF ++P RN++SW+ M+ GY K                     
Sbjct: 317 SILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGK--------------------- 355

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
                      G+ KEA RL+D+M+    +PDD T +++L  C+ SGL+  G +  + + 
Sbjct: 356 ----------HGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLC 405

Query: 339 KYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ---G 393
            Y   K        +VD+  + G L  A ++ + M  + ++  W  +L    +HG    G
Sbjct: 406 SYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELG 465

Query: 394 EKALGLFSRMKDE 406
           ++  G+  R+  E
Sbjct: 466 KEVGGILLRLDSE 478


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 191/574 (33%), Positives = 315/574 (54%), Gaps = 15/574 (2%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + +++   II    + + ++   ++S  A CRQ+  A K+F  +Q  D+  + TL+ 
Sbjct: 160 DLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVA 219

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN    +A ++ L MQE G   D+ T   +L A        + + IH   ++ G+  
Sbjct: 220 GYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFES 279

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF-- 206
            + V N+L+D Y KCG     +A+ +F  M  + +VSWN+MI G  + GE  EA   F  
Sbjct: 280 LVNVTNALLDMYFKCG--SARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 207 ----DEMPERDAVSWNTILDGYAKAGEMN---LAFELFEKIP-HRNIVSWSTMVWGYSKD 258
                E+P R  V+   +L   A  G++       +L +K+    N+   ++++  YSK 
Sbjct: 338 MLDEGEVPTR--VTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKC 395

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +++A  +F+ +  KT V W  +I GYA+ G  KEA  L+  M+  G+K D  TL+ ++
Sbjct: 396 KRVDIAASIFNNLE-KTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVI 454

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            A A+  +      +H    +     N  V  ALVDMYAKCG++  A  +F+ M ++ ++
Sbjct: 455 TALADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVI 514

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +WNAM+ G   HG G++ L LF+ M+     P+  TF+ V+ AC+H+GF+++G+  F SM
Sbjct: 515 TWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSM 574

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           + DY + P ++HY  M+DLLGR+G+L +A   +Q MP++P   + G +LGAC+ H  VEL
Sbjct: 575 QEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVEL 634

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E+    L +L   + G + +L+NI+A+   W+KVA VR  M+     K  G S VE+ N
Sbjct: 635 GEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRN 694

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           E+H F      HP+S++IY  + TLG ++K  G+
Sbjct: 695 EIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGY 728



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 145/515 (28%), Positives = 245/515 (47%), Gaps = 20/515 (3%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +  +  Q+   IIK     +     K+IS          A +VF  ++     LY
Sbjct: 54  LENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLY 113

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           + +++   +NS    A   FL M    V      Y  LL+ C         + IH LI  
Sbjct: 114 HIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIIT 173

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  ++FV  +++  Y+KC    +  A K+F  M  +D+VSW +++AG  + G    A 
Sbjct: 174 NGFESNLFVMTAVMSLYAKCR--QIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRAL 231

Query: 204 RLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGY 255
           +L  +M E     D+V+  +IL   A    + +   +    F       +   + ++  Y
Sbjct: 232 QLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMY 291

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K G   +A+L+F  M +KT+V W  +I G A+ G ++EA   + +M + G  P   T++
Sbjct: 292 FKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMM 351

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
            +L ACA  G L  G  VH  ++K +   N +V N+L+ MY+KC  +D A S+FN + K 
Sbjct: 352 GVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKT 411

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF-IDKGVQY 434
           + V+WNAM+ G A +G  ++AL LF  M+ +G   D +T VGV+ A   A F +++  ++
Sbjct: 412 N-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITAL--ADFSVNRQAKW 468

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
            + +     +   V     ++D+  + G +K A +L   M  E + I W  ++     H 
Sbjct: 469 IHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQ-ERHVITWNAMIDGYGTHG 527

Query: 495 AVELAEEVLDCLIRL-KGS-DPGNYTMLSNIFAAT 527
              + +E LD    + KG+  P + T LS I A +
Sbjct: 528 ---VGKETLDLFNEMQKGAVKPNDITFLSVISACS 559


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 315/583 (54%), Gaps = 14/583 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N++  +Q+ A ++++  ++D + A  L+       ++ +A  +F  + D DV  +N LI
Sbjct: 216 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV N  + +A  + L M+  G+  + F    +LKAC G   F L + IH  + K    
Sbjct: 276 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD 335

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D ++   L+D Y+K   +  ++  K+F  M  RD++ WN++I+G   GG   EA  +F 
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDAM--KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFY 393

Query: 208 EMPERDAVSWNTILDGYAK-------AGEMNLAFELFEKIP---HRNIVSWSTMVWGYSK 257
            + +       T L    K       A        L EKI      ++V+   ++  Y K
Sbjct: 394 GLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN--GLIDSYWK 451

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
              +  A  +F+   +  ++  T +I+  ++    + A +L+ +M   GL+PD   L S+
Sbjct: 452 CSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSL 511

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA       G +VHA + K +F  +    NALV  YAKCGS+++A   F+ + ++ +
Sbjct: 512 LNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGV 571

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSW+AM+ GLA HG G++AL LF RM DEG  P+  T   VLCAC HAG +D+  +YF S
Sbjct: 572 VSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNS 631

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M+  +GI    EHY CMIDLLGR+G+L +A+ LV SMP + NA +WG LLGA R H   E
Sbjct: 632 MKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPE 691

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L +   + L  L+    G + +L+N +A++G WN+VA VR  MK +  +K    S VEV 
Sbjct: 692 LGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 751

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           ++VH F V D+ HP +++IY  ++ LG  +   G+   +  ++
Sbjct: 752 DKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDL 794



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 235/501 (46%), Gaps = 16/501 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQN 93
           Q+ A  +      D ++A  L++       M  A +VF++   + +   +N L+ A V+N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                A +VF +M   G+    F +  ++ AC G       + +HA++ + GY  D+F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 240

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+D Y K G   V +A  +F  M + D+VSWN++I+G V  G    A  L  +M    
Sbjct: 241 NALVDMYVKMG--RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSG 298

Query: 214 AVS----WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAK 265
            V      ++IL   A AG  +L  ++   +   N  S   +  G    Y+K+  ++ A 
Sbjct: 299 LVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAM 358

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD M  + L+ W  +ISG +  G   EA  ++  + + GL  +  TL ++L + A   
Sbjct: 359 KVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLE 418

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
                 +VHA   K  F  + +V N L+D Y KC  L +A+ VF   +  D+++  +M+ 
Sbjct: 419 AASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMIT 478

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
            L+    GE A+ LF  M  +G  PD +    +L AC      ++G Q + + ++R +  
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-- 536

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +        ++    + G +++A     S+P E   + W  ++G   +H   + A E+  
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 505 CLIRLKGSDPGNYTMLSNIFA 525
            ++  +G +P + TM S + A
Sbjct: 596 RMVD-EGINPNHITMTSVLCA 615



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 226/527 (42%), Gaps = 109/527 (20%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           LIS  + CR+   A +VF++I DP    +++L+ A   N L   A + F  M+ +GV  +
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            F  P +LK         L   +HA+    G+  D+FV N+L+  Y   G   +  A+++
Sbjct: 103 EFALPVVLKCVPDAQ---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF--MDDARRV 157

Query: 175 FMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEMP----------------------- 210
           F   G ER+ VSWN +++  VK  +  +A ++F EM                        
Sbjct: 158 FDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 211 ----------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                           E+D  + N ++D Y K G +++A  +FEK+P  ++VSW+ +   
Sbjct: 218 IDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNAL--- 274

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
                                       ISG    G    A  L  QM+ +GL P+   L
Sbjct: 275 ----------------------------ISGCVLNGHDHRAIELLLQMKSSGLVPNVFML 306

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            SIL ACA +G   LG ++H  + K     +  +   LVDMYAK   LD+AM VF+ M+ 
Sbjct: 307 SSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSH 366

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL---------CACTHA 425
           +DL+ WNA++ G +  G+ ++A  +F  ++ EG G ++ T   VL          A    
Sbjct: 367 RDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQV 426

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGC---------------------MIDLLGRSGRL 464
             + + + + +      G++       C                     MI  L +    
Sbjct: 427 HALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHG 486

Query: 465 KEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           + A++L   M    +EP+  +  +LL AC   +A E  ++V   LI+
Sbjct: 487 EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    +  + T+Q+ A   K+    D ++   LI S   C  +  AI+VF 
Sbjct: 404 RTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFE 463

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +    D+    ++I A  Q      A ++F++M  KG+  D F    LL AC   + +  
Sbjct: 464 ECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 523

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D F  N+L+ +Y+KCG   +  A+  F S+ ER +VSW++MI GL
Sbjct: 524 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCG--SIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 194 VKGGE-----------------------------------LSEARRLFDEMPE-----RD 213
            + G                                    + EA+R F+ M E     R 
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              ++ ++D   +AG+++ A EL   +P + N   W  ++       D E+ KL    LF
Sbjct: 642 EEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKLF 701

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  E A++   M+++ +K +
Sbjct: 702 ILEPEKSGTH-VLLANTYASSGMWNEVAKVRKLMKDSNIKKE 742



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 90/389 (23%), Positives = 153/389 (39%), Gaps = 74/389 (19%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL- 276
           N ++  Y+K      A  +F++IP    VSWS++V  YS +G    A   F  M A+ + 
Sbjct: 41  NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVC 100

Query: 277 ------------VP-----------------------WTIIISGYAEKGMAKEAARLYD- 300
                       VP                          +++ Y   G   +A R++D 
Sbjct: 101 CNEFALPVVLKCVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDE 160

Query: 301 -------------------------------QMEEAGLKPDDGTLISILAACAESGLLGL 329
                                          +M  +G++P +     ++ AC  S  +  
Sbjct: 161 AGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDA 220

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G +VHA + +  ++ +    NALVDMY K G +D A  +F  M   D+VSWNA++ G  +
Sbjct: 221 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G   +A+ L  +MK  G  P+ +    +L AC  AG  D G Q    M +         
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
             G ++D+  ++  L +A+++   M    + I+W  L+  C  H      +E       L
Sbjct: 341 GVG-LVDMYAKNHFLDDAMKVFDWMS-HRDLILWNALISGC-SHGGRH--DEAFSIFYGL 395

Query: 510 KGSDPG-NYTMLSNIFAATGDWNKVANVR 537
           +    G N T L+ +  +T      +  R
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASATR 424


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 187/570 (32%), Positives = 301/570 (52%), Gaps = 68/570 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C    +  +L A +++  L  D  +A +L  + A   ++  ++ +    +DP    Y
Sbjct: 31  LAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFY 90

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            + I A     L+     +  DM  +G+     T    L AC G     L + +HA  +K
Sbjct: 91  TSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRG---LSLGRALHAYAFK 147

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
               GD +V  +L+  Y++                                  G+ + AR
Sbjct: 148 LALSGDSYVATALLSMYAR---------------------------------AGDAAAAR 174

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            LFDEMP+   VS   +L  YA  G ++ A  LF+ +P ++ + W+ M+ GY+       
Sbjct: 175 ALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYT------- 227

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
                                   + G   EA +L+ +M  +  +PD+ T++ +L+A A+
Sbjct: 228 ------------------------QHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQ 263

Query: 324 SGLLGLGMKVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G +  G  +H+ +   R  + N  V  ALVDMY KCGSL++A++VF+G+  KD+V WNA
Sbjct: 264 LGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNA 323

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G AMHG   KAL +F +++D+G  P   TF+G+L AC+H+G +++G  +F SME +Y
Sbjct: 324 MINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEY 383

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P++EHYGCM+DLLGR+G ++EA  LVQS+ + P+A++W +LL ACR H  + L + +
Sbjct: 384 GIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRI 443

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D L+    ++ G Y +LSNI+AA G W +VA VR  MK +  QK  G S++E+D +V+E
Sbjct: 444 ADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYE 503

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F   D  HP +++IY M++ +   +K  GH
Sbjct: 504 FVAGDMSHPCTDEIYAMLDKMNALVKEHGH 533


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 210/655 (32%), Positives = 323/655 (49%), Gaps = 118/655 (18%)

Query: 47  RDPYIAPKLISSLALCRQ---------MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           RD Y   K ++  AL R          M  A+++F+++   D  L+N +I+      L  
Sbjct: 53  RDRYKVTKQVNDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCGLYI 112

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           +A + +  M   GV  D FTYPF++K+  G +     + IHA++ K G+  D++V NSLI
Sbjct: 113 EAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLI 172

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PE 211
             Y K G      A+K+F  M ERDIVSWNSMI+G +  G+   +  LF EM      P+
Sbjct: 173 SLYMKLGCAWD--AEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPD 230

Query: 212 R----------------------------------DAVSWNTILDGYAKAGEMNLAFELF 237
           R                                  D +   +ILD Y+K GE++ A  +F
Sbjct: 231 RFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIF 290

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-----------TLVPWTIIISG- 285
             +  RNIV+W+ M+  Y+++G +  A L F +M  +            L+P + I+ G 
Sbjct: 291 NGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILEGR 350

Query: 286 ------------------------YAEKGMAKEAARLYDQMEE----------------- 304
                                   Y E G  K A  ++D+M E                 
Sbjct: 351 TIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNG 410

Query: 305 --------------AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
                         + L PD  T+ SIL A AES  L  G ++HA I K R+  NT + N
Sbjct: 411 KNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILN 470

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +LV MYA CG L++A   FN +  KD+VSWN+++   A+HG G  ++ LFS M      P
Sbjct: 471 SLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNP 530

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           +K TF  +L AC+ +G +D+G +YF SM+R+YGI P +EHYGCM+DL+GR+G    A R 
Sbjct: 531 NKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRF 590

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++ MP  P A IWG+LL A R H  + +AE   + + +++  + G Y +L N++A  G W
Sbjct: 591 LEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRW 650

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
             V  ++L M+     + S  S+VE   + H F+  D+ H  + +IY++++ + +
Sbjct: 651 EDVNRIKLLMESKGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSR 705


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 184/493 (37%), Positives = 273/493 (55%), Gaps = 22/493 (4%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M   G   + FT+PF +K+C   +     + +H  ++K G   + FV  SLI  Y KC +
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 166 VGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNT 219
           +    A+KLF       +  V +NS+++G      + +   LF EM E     + V+   
Sbjct: 61  I--DNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLG 118

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSW---------STMVWGYSKDGDMEMAKLLFDR 270
           ++      G + L   +     H   V +         + ++  Y K G+++  + LFD 
Sbjct: 119 LVQPCGIPGNLGLGMCV-----HGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDE 173

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP K L+ W  +I+GYA+ G+A     LY +ME  G  PD  TL+ +L++CA  G L +G
Sbjct: 174 MPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVG 233

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            +V   +  + F  N  + NALV+MYA+CG+L  A  +F+GM  K +VSW A++ G  MH
Sbjct: 234 KEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMH 293

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           GQGE A+GLF  M   G  PD   FV VL AC+HAG  +KG+ YF  MER YG+ P  EH
Sbjct: 294 GQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEH 353

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           Y CM+DLLGR+GRL EA  L++SM V  +  +WG LLGAC+ H  VELAE   + +I L+
Sbjct: 354 YSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELE 413

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
            ++ G Y +LSN++   G+   +  VR+ M+K + +K  G S VE    VH F   D+ H
Sbjct: 414 PTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNH 473

Query: 571 PKSEQIYQMINTL 583
           P++ +IY+ +N L
Sbjct: 474 PQTNEIYKKLNEL 486



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 168/408 (41%), Gaps = 80/408 (19%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH----LYNTLIRA 89
           KQL   + K     +P++   LIS    C  +  A K+F+  ++P        YN+L+  
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFD--ENPQSRKLTVCYNSLLSG 87

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              NS       +F +M+E GV  +  T   L++ C       L   +H    K G   D
Sbjct: 88  YALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMD 147

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V N L+  Y                                 VK GE+   R+LFDEM
Sbjct: 148 SSVGNCLLTMY---------------------------------VKSGEIDCGRKLFDEM 174

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-------------------------- 243
           P +  ++WN +++GYA+ G  N   EL++++  +                          
Sbjct: 175 PRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGK 234

Query: 244 -------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
                        N    + +V  Y++ G+++ A+ +FD MP K++V WT II GY   G
Sbjct: 235 EVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHG 294

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVC 349
             + A  L+D+M   G+KPD    +S+L+AC+ +GL   G+     +  KY  +      
Sbjct: 295 QGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHY 354

Query: 350 NALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
           + +VD+  + G L+ A  +   M  + D   W A+L    +H   E A
Sbjct: 355 SCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELA 402



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/398 (21%), Positives = 158/398 (39%), Gaps = 67/398 (16%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           +K  L  D  +   L++      ++    K+F+++    +  +N +I    QN L     
Sbjct: 140 VKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVL 199

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
            ++ +M+ KG   D  T   +L +C       + + +   +   G+  + F+ N+L++ Y
Sbjct: 200 ELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMY 259

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDA 214
           ++CG   +  A+ +F  M  + +VSW ++I G    G+   A  LFDEM      P+  A
Sbjct: 260 ARCG--NLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTA 317

Query: 215 V----------------------------------SWNTILDGYAKAGEMNLAFELFEKI 240
                                               ++ ++D   +AG +N A EL E +
Sbjct: 318 FVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESM 377

Query: 241 PHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRM----PAKTLVPWTIIISG-YAEKGMAKE 294
             R +   W  ++       ++E+A+L F+++    P  T   + +++S  Y E G  + 
Sbjct: 378 QVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNT--GYYVLLSNVYTEAGNLEG 435

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
             R+   M +  LK D G        C+     G   +VH      R    TN      +
Sbjct: 436 ILRVRMLMRKRKLKKDPG--------CSYVEFKG---RVHLFFAGDRNHPQTN------E 478

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +Y K   L+N +   +G  K D       L  + +H +
Sbjct: 479 IYKKLNELENLVKDLDGCKKNDHERREEYLNSMGVHSE 516


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 329/604 (54%), Gaps = 43/604 (7%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+   I+K+   +D ++   L+   A C ++  A KVF+++ + +V  + ++I    +  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 95  LNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               A  +F  M +++ V  ++ T   ++ AC         + ++A I   G   +  + 
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           ++L+D Y KC  + V  AK+LF   G  ++   N+M +  V+ G   EA  +F+ M    
Sbjct: 275 SALVDMYMKCNAIDV--AKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG 332

Query: 210 --PERDAV-----------------------------SW----NTILDGYAKAGEMNLAF 234
             P+R ++                             SW    N ++D Y K    + AF
Sbjct: 333 VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 392

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            +F+++ ++ +V+W+++V GY ++G+++ A   F+ MP K +V W  IISG  +  + +E
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 295 AARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           A  ++  M+ + G+  D  T++SI +AC   G L L   ++  I K   + +  +   LV
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DM+++CG  ++AMS+FN +T +D+ +W A +  +AM G  E+A+ LF  M ++G  PD  
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
            FVG L AC+H G + +G + FYSM + +G+ P+  HYGCM+DLLGR+G L+EA++L++ 
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP+EPN +IW +LL ACR    VE+A    + +  L     G+Y +LSN++A+ G WN +
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           A VRL MK+   +KP G SS+++  + HEF+  D+ HP+   I  M++ + +    +GH 
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 594 AKLS 597
             LS
Sbjct: 753 PDLS 756



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 261/586 (44%), Gaps = 82/586 (13%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---SLALCRQ 64
           P+  ++ +  +    +L  CK +++ K     + K  L  D     KL++    L     
Sbjct: 23  PSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRES 82

Query: 65  MGLAIKVFNDIQD-PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           +  A +VF + +      +YN+LIR    + L  +A  +FL M   G+  D +T+PF L 
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC           IH LI K GY  D+FV NSL+  Y++CG   +  A+K+F  M ER++
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECG--ELDSARKVFDEMSERNV 200

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI-----LDGYAKAGEMNLAFELFE 238
           VSW SMI G  +     +A  LF  M   + V+ N++     +   AK  ++    +++ 
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260

Query: 239 KIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            I +  I    +  S +V  Y K   +++AK LFD   A  L     + S Y  +G+ +E
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTRE 320

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  +++ M ++G++PD  +++S +++C++   +  G   H  + +  F+   N+CNAL+D
Sbjct: 321 ALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380

Query: 355 MYAKC-------------------------------GSLDNAMSVFNGMTKKDLVSWNAM 383
           MY KC                               G +D A   F  M +K++VSWN +
Sbjct: 381 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 384 LYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           + GL      E+A+ +F  M+  EG   D  T + +  AC H G +D     +Y +E++ 
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN- 499

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--------------------------- 475
           GI   V     ++D+  R G  + A+ +  S+                            
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559

Query: 476 -------VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
                  ++P+ + +   L AC     V+  +E+   +++L G  P
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 19/213 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  K ++  I K  +Q D  +   L+   + C     A+ +FN + + DV  +   I A
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
                   +A  +F DM E+G+  D   +   L AC+       GK  F+ +  +H +  
Sbjct: 546 MAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  ++G       ++D   + G++  ++     M M   D++ WNS++A     G +  A
Sbjct: 606 EDVHYG------CMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMA 658

Query: 203 RRLFDEM----PERDAVSWNTILDGYAKAGEMN 231
               +++    PER   S+  + + YA AG  N
Sbjct: 659 AYAAEKIQVLAPERTG-SYVLLSNVYASAGRWN 690


>gi|297741829|emb|CBI33142.3| unnamed protein product [Vitis vinifera]
          Length = 1198

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 161/409 (39%), Positives = 253/409 (61%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           V  A +LF  M  R+++S+ +M+ G  K GE+ +AR LF+ MP+++ VSW  ++ GY + 
Sbjct: 84  VEEASRLFEEMPRRNVISYTAMVDGYAKIGEIEQARALFNCMPQKNVVSWTVMISGYVEN 143

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           G+ + A  LFE++P +NIV+ + M+ GY K+G  + AK+LFD++P + L  W  +I+GYA
Sbjct: 144 GKFDEAENLFEQMPDKNIVAMTAMITGYCKEGKTDKAKILFDQIPCRDLASWNAMITGYA 203

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           + G  +EA +L+ QM + G++PD  TLIS+L AC+    L  G K H  + K  ++   +
Sbjct: 204 QNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLASLQEGRKTHVLVLKSGYESRIS 263

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           +CNAL+ MY KCGS+ ++   F  +   D+VSWNAM+   A HG  ++AL  F  M+   
Sbjct: 264 ICNALITMYCKCGSILDSELAFRQIDHPDVVSWNAMIAAFARHGFYDRALASFGEMRSNR 323

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             PD  TF+ +L AC HAG + + + +F SM   Y I+P+ EH+ C++D+L R G++++A
Sbjct: 324 VEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYKIVPRPEHFACLVDILSRGGQVEKA 383

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            +++Q MP E +  IWG LL AC  H  V+L E     ++ L+  + G Y +LSNI+AA 
Sbjct: 384 YKIIQEMPFEADCGIWGALLAACHVHLNVKLGELAAKKIVELEPQNSGAYVVLSNIYAAA 443

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           G W +V  VR  M++   +K    S +E+DN+VH F   D  HP+  +I
Sbjct: 444 GMWGEVTRVRGLMREQGVKKQPAYSWMEIDNKVHFFLGDDASHPEIHRI 492



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 98/212 (46%), Gaps = 13/212 (6%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ I   D+  +N +I    QN    +A ++   M + G+  D+ T   +L AC+    
Sbjct: 183 LFDQIPCRDLASWNAMITGYAQNGSGEEALKLHSQMLKMGMQPDHSTLISVLTACSSLAS 242

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG-VVGVSLAKKLFMSMGERDIVSWNSM 189
               +  H L+ K GY   I + N+LI  Y KCG ++   LA   F  +   D+VSWN+M
Sbjct: 243 LQEGRKTHVLVLKSGYESRISICNALITMYCKCGSILDSELA---FRQIDHPDVVSWNAM 299

Query: 190 IAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEK-IPHRN 244
           IA   + G    A   F EM     E D +++ ++L     AG+++ +   F   I    
Sbjct: 300 IAAFARHGFYDRALASFGEMRSNRVEPDGITFLSLLSACGHAGKVHESLNWFNSMIESYK 359

Query: 245 IV----SWSTMVWGYSKDGDMEMAKLLFDRMP 272
           IV     ++ +V   S+ G +E A  +   MP
Sbjct: 360 IVPRPEHFACLVDILSRGGQVEKAYKIIQEMP 391


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/538 (35%), Positives = 297/538 (55%), Gaps = 13/538 (2%)

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           LA KVF+ + + D  L+NT+I    +NS    + RVF+DM + G+  D+ T   +L A  
Sbjct: 166 LARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
               + L   I  L  K G   D++V   LI  YSKCG       + LF  + + D++S+
Sbjct: 226 ELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCG--KSCKGRILFDQIDQPDLISY 283

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG----YAKAGEMNLAFELFEKIPH 242
           N+MI+G     E   A  LF E+        ++ L G    Y     + L+  L + +  
Sbjct: 284 NAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLS-RLIQNLSL 342

Query: 243 R-NIV---SWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           +  I+   S ST +   Y +  +++ A+ LFD  P K+L  W  +ISGY + G+   A  
Sbjct: 343 KIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAIS 402

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+ +M    L P+  T+ SIL+ACA+ G L +G  VH  I   R + N  V  ALVDMYA
Sbjct: 403 LFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYA 461

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS+  A  +F+ M  K++V+WNAM+ G  +HG G++AL LF  M   G  P   TF+ 
Sbjct: 462 KCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLS 521

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           +L AC+H+G + +G + F+SM  +YG  P  EHY CM+D+LGR+G+L  AL  ++ MP+E
Sbjct: 522 ILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLE 581

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
           P   +WG LLGAC  H   E+A      L +L   + G Y +LSNI++   ++ K A+VR
Sbjct: 582 PGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVR 641

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
             +KK +  K  G + +E+D++ + F+  D+ HP++  I++M+  L   ++  G+ A+
Sbjct: 642 QVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAE 699



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 234/517 (45%), Gaps = 23/517 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L+    L+Q  Q+ AQ+I   +  D     KL         +    ++FN +  PD+ L+
Sbjct: 21  LNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLF 80

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           N LIR    N L   +  ++  +++   +  DNFTY F + A +      +  ++HA   
Sbjct: 81  NVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSI 140

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
             G   ++FV ++++D Y K       LA+K+F  M ERD V WN+MI+G  +     ++
Sbjct: 141 VDGVASNLFVGSAIVDLYFK--FTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDS 198

Query: 203 RRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWG 254
            R+F +M +     D+ +  T+L   A+  E  L   +     +K  H ++   + ++  
Sbjct: 199 IRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISL 258

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           YSK G     ++LFD++    L+ +  +ISGY      + A  L+ ++  +G + +  TL
Sbjct: 259 YSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTL 318

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           + ++        L L   +     K       +V  AL  +Y +   +  A  +F+   +
Sbjct: 319 VGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPE 378

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K L SWNAM+ G   +G  ++A+ LF  M  +   P+  T   +L AC   G +  G ++
Sbjct: 379 KSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIG-KW 436

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH- 493
            + + +   +   V     ++D+  + G + EA +L   M V+ N + W  ++     H 
Sbjct: 437 VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYGLHG 495

Query: 494 ---NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
               A++L  E+L       G  P   T LS ++A +
Sbjct: 496 HGKEALKLFYEMLQ-----SGIPPTGVTFLSILYACS 527



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 168/364 (46%), Gaps = 11/364 (3%)

Query: 42  KLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR 101
           K  L  D Y+   LIS  + C +      +F+ I  PD+  YN +I     N     A  
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 102 VFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           +F ++   G   ++ T   L+      N   L ++I  L  K G      V  +L   Y 
Sbjct: 302 LFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY- 360

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER---DAVSWN 218
            C +  V  A++LF    E+ + SWN+MI+G  + G    A  LF EM  +   + V+  
Sbjct: 361 -CRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVT 419

Query: 219 TILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +IL   A+ G +++   +   I       N+   + +V  Y+K G +  A+ LFD M  K
Sbjct: 420 SILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV- 333
            +V W  +I+GY   G  KEA +L+ +M ++G+ P   T +SIL AC+ SGL+  G ++ 
Sbjct: 480 NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF 539

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ 392
           H+  N Y F+  +     +VD+  + G L NA+     M  +     W A+L    +H  
Sbjct: 540 HSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKN 599

Query: 393 GEKA 396
            E A
Sbjct: 600 TEMA 603



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 133/309 (43%), Gaps = 11/309 (3%)

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           F L   N       +  I A +   G   D+     L   +   G   V+  ++LF  + 
Sbjct: 16  FFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLG--AVAHVRQLFNKVS 73

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
           + D+  +N +I G    G    +  L+  + +   +  +     +A +    L  E    
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGV 133

Query: 240 IPH---------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + H          N+   S +V  Y K    E+A+ +FD MP +  V W  +ISG++   
Sbjct: 134 LLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             +++ R++  M + GL  D  TL ++L A AE     LGM +    +K     +  V  
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+ +Y+KCG       +F+ + + DL+S+NAM+ G   + + E A+ LF  +   G   
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 411 DKYTFVGVL 419
           +  T VG++
Sbjct: 314 NSSTLVGLI 322


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 185/609 (30%), Positives = 313/609 (51%), Gaps = 72/609 (11%)

Query: 27  CKNLNQT--KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           CKN +     ++  +I+K    R+  +   L+   + C ++    ++F  +   DV  +N
Sbjct: 144 CKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWN 203

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           T+I   V   +  +A  +F +M   GV  D  T   L+  C       + + +H  I   
Sbjct: 204 TMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDN 263

Query: 145 GYFGDIFVPNSLIDSYSKCG-------------------VVGVSL------------AKK 173
             +    + N L+D YSKCG                   V+  +L            A++
Sbjct: 264 KLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQ 323

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PER--------------- 212
           LF  M ER +VSW +M++G V+GG   E+  LF +M      P+                
Sbjct: 324 LFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLED 383

Query: 213 ------------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                             D    N +LD YAK G+++ A   FE++P ++  SW++M+ G
Sbjct: 384 FDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDG 443

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           + + G ++ A+  F+++P K +V W  +++ Y +  +  E+  ++ +M+ + +KPD  TL
Sbjct: 444 FCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTL 503

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           IS+L++CA+ G L  G+ V+  I K     +  +  AL+DMY KCG ++ A  +F  + +
Sbjct: 504 ISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIE 563

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K++  W AM+   AM GQ  +A+ L+  M++ G  PD  TF+ +L AC+H G +D+G +Y
Sbjct: 564 KNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKY 623

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  +   Y I+P + HYGCM+DLLGR G L+E ++ ++ MP+EP+  IW +L+ ACR H+
Sbjct: 624 FNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHH 683

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            VELAE+    LI +  ++ G + +LSNI+A  G W+ V+ VR ++ +T   K  G + +
Sbjct: 684 NVELAEQAFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMI 743

Query: 555 EVDNEVHEF 563
           E +  VHEF
Sbjct: 744 EQNGVVHEF 752



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 157/580 (27%), Positives = 267/580 (46%), Gaps = 85/580 (14%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C N+ +   + A +I  +L  DP I  ++++ L     +  A ++ +   +P+  ++
Sbjct: 42  LKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIW 101

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           NTL+   ++     +    +  M  +GV  D  T+ FL+ AC       L   +H  I K
Sbjct: 102 NTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILK 161

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           CG+  +  + N+L+  YSKCG   +    +LF  M  RD++SWN+MI+  V  G   EA 
Sbjct: 162 CGFGRNKSLNNNLMGLYSKCG--KLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREAL 219

Query: 204 RLFDEM------PER---------------------------DAVSW------NTILDGY 224
            LFDEM      P+                            D   W      N ++D Y
Sbjct: 220 DLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMY 279

Query: 225 AKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
           +K G+M+ A  L  +      ++V W+T+V GY K   ++ A+ LFD+M  ++LV WT +
Sbjct: 280 SKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTM 339

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           +SGY + G   E+  L+ QM    + PD+  L+++L+AC       LG  VHA I  Y  
Sbjct: 340 MSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGM 399

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSV-------------------------------FNG 371
             +  + NAL+D+YAKCG LD A+                                 FN 
Sbjct: 400 LVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNK 459

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           + +KD+VSWN M+     H    ++  +F +M+     PDK T + +L +C   G ++ G
Sbjct: 460 IPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHG 519

Query: 432 VQYFYSMER-DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           +     +E+ + GI   +     +ID+ G+ G ++ A  +   + +E N  +W  ++ A 
Sbjct: 520 IWVNVYIEKNEIGIDAMLG--TALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAA- 575

Query: 491 RKHNAVE-LAEEVLDCLIRL--KGSDPGNYTMLSNIFAAT 527
               A+E  A E +D  + +  +G  P + T ++ + A +
Sbjct: 576 ---YAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACS 612



 Score = 45.8 bits (107), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 89/200 (44%), Gaps = 14/200 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L +  K   LN    +   I K ++  D  +   LI     C  + +A ++F  I + +V
Sbjct: 507 LSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNV 566

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHL 133
            ++  ++ A        +A  ++L+M+E+GV  D+ T+  LL AC+       G  +F+ 
Sbjct: 567 FVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNK 626

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           ++  + +I    ++G       ++D   + G +  ++     M + E D+  W+S++   
Sbjct: 627 LRSFYNIIPTIHHYG------CMVDLLGRVGHLEETVKFIERMPI-EPDVSIWSSLMRAC 679

Query: 194 VKGGELSEARRLFDEMPERD 213
                +  A + F ++ E D
Sbjct: 680 RSHHNVELAEQAFKQLIEID 699


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 184/557 (33%), Positives = 309/557 (55%), Gaps = 39/557 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +H CK+    + + A I++  +     +A +L+S  +L +    ++ +F + ++ +  ++
Sbjct: 36  IHTCKDTVSLRLVHAHILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSEERNPFVF 94

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N LIR   +N+    + R F+ M   GV  D  T+PF+LK+ +   +  L + +HA   K
Sbjct: 95  NALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRALHAATLK 154

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                D FV  SL+D Y+K G                                 +L+ A 
Sbjct: 155 NFVDCDSFVRVSLVDMYAKTG---------------------------------QLNHAF 181

Query: 204 RLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
           ++F+E P+R      + WN +++GY +A +M +A  LF  +P RN  SWST++ GY  +G
Sbjct: 182 QVFEETPDRIKKESILLWNVLVNGYCRAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNG 241

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           ++  AK LF+ MP K +V WT +I+G+++ G  + A   Y +M E GLKP++ T+ ++L+
Sbjct: 242 ELNRAKQLFELMPEKNVVSWTTLINGFSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLS 301

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           AC++SG LG G+++H  I     K +  +  +L+DMYAKCG +D A +VF+ M  KD++S
Sbjct: 302 ACSKSGALGSGIRIHGYILDNGIKLDRAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILS 361

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W AM+ G A+HG+  +A+  F +M   G  PD+  F+ VL AC ++G +D G+ +F SM 
Sbjct: 362 WTAMIQGWAVHGRFHQAIQCFRQMMYSGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMR 421

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DY I P ++HY  ++DLLGR+G+L EA  LV+ MP+ P+   W  L  AC+ H +    
Sbjct: 422 LDYAIEPTLKHYVLVVDLLGRAGKLDEAHELVEYMPINPDLTTWAALYRACKAHKS-NRT 480

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           + VL  L+ L     G+Y  L    AA G +  V   RL ++K   ++  G S +E+D +
Sbjct: 481 DIVLQNLLELDPELRGSYIFLDKTHAAKGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQ 540

Query: 560 VHEFSVCDQLHPKSEQI 576
           +++F+  D  H ++++I
Sbjct: 541 LNKFAADDYTHKQAQEI 557


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 316/571 (55%), Gaps = 53/571 (9%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           CK++ + KQ+ A ++K     D  IA +++  S+ +  R +G A+ VF+ + + +   +N
Sbjct: 25  CKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWN 84

Query: 85  TLIRACVQNS-LNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           T+IRA  +    +  A  VF  M  E  V  + FT+P +LKAC         + +H L+ 
Sbjct: 85  TVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLL 144

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G   D FV  +L+  Y  CG            SM + +++ + +     V+G  + + 
Sbjct: 145 KFGLVDDEFVVTNLLRMYVMCG------------SMEDANVLFYRN-----VEG--VDDV 185

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
           R L      RD                        E+    N+V  + MV GY++ G+++
Sbjct: 186 RNLV-----RD------------------------ERGREFNVVLCNVMVDGYARVGNLK 216

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAAC 321
            A+ LFDRM  +++V W ++ISGYA+ G  KEA  ++ +M + G + P+  TL+S+L A 
Sbjct: 217 AARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAI 276

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           +  G+L LG  VH    K + + +  + +ALVDMYAKCGS++ A+ VF  + + ++++WN
Sbjct: 277 SRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWN 336

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++ GLAMHG+        SRM+  G  P   T++ +L AC+HAG +D+G  +F  M   
Sbjct: 337 AVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNS 396

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P++EHYGCM+DLLGR+G L+EA  L+ +MP++P+ +IW  LLGA + H  +++   
Sbjct: 397 VGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMR 456

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
             + L+++   D G Y  LSN++A++G+W+ VA VRL MK    +K  G S +E+D  +H
Sbjct: 457 AAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIH 516

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EF V D  H +++ I+ M+  +   L   GH
Sbjct: 517 EFLVEDDSHSRAKDIHSMLEEISNKLSLEGH 547


>gi|357118938|ref|XP_003561204.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 618

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 159/420 (37%), Positives = 267/420 (63%), Gaps = 4/420 (0%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A+KLF  M ER++++W +M+AG+ + G ++EAR LFD MPER+ VSWN ++ GYA+   +
Sbjct: 179 ARKLFDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVVSWNAMISGYARNHMI 238

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + A +LF K+P R+I SW+ M+ G+ ++ ++E A+ LFD+MP + +V WT +++GY +  
Sbjct: 239 DEAHDLFMKMPTRDIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSI 298

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
            ++ A +L++ M   G++P+  T +  + AC+    L  G +VH  I K  F+ +T + +
Sbjct: 299 QSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIES 358

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+++YAKCG +  A  VFN   +KD++SWN M+   A HG G +A+ L+ +M++ G+ P
Sbjct: 359 TLMNLYAKCGEIILARKVFNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKP 418

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           +  T+VG+L AC+H+G +D+G++ F  M +D  I  + EHY C+IDL  R+GRL +A RL
Sbjct: 419 NDVTYVGLLSACSHSGLVDEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRL 478

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           +  + VEP++ +W  LLG C  H    + +     L+  + ++ G YT+L NI+A+ G W
Sbjct: 479 IHFLKVEPSSTVWNALLGGCNSHGNESIGDLAARNLLEAEPNNAGTYTLLCNIYASAGKW 538

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
            + A +R +M     +K  G S +EV N+VH F   D+ H +S+    +IN+L +D+  +
Sbjct: 539 KEAAKIRSEMNDRGLKKQPGCSWIEVANKVHVFVSRDKSHSESD----LINSLLQDIHDI 594



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 182/347 (52%), Gaps = 15/347 (4%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           D+    +L+ +Y+  G++    A+ LF      R++V+W ++++G  + G + EA  LF 
Sbjct: 65  DVVSWTALVAAYACQGML--HDARALFDRPDARRNVVTWTALLSGYARAGRVDEAEALFG 122

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MPER+ VSWNT+L+ Y  +G +  A  LF  +P R+  SW+ ++    + G+++ A+ L
Sbjct: 123 RMPERNVVSWNTMLEAYTSSGRVGDACTLFNGMPVRDAGSWNILLAALVRSGNIDKARKL 182

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FDRMP + ++ WT +++G A  G   EA  L+D M E  +     +  ++++  A + ++
Sbjct: 183 FDRMPERNVMAWTTMVAGIARSGSVNEARALFDGMPERNVV----SWNAMISGYARNHMI 238

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
               + H    K   + +    N ++  + +  +L+ A  +F+ M ++++V+W  M+ G 
Sbjct: 239 D---EAHDLFMKMPTR-DIASWNIMITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGY 294

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILP 446
               Q E AL LF+ M  +G  P++ TF+G + AC++   + +G Q    + +  +    
Sbjct: 295 LQSIQSETALQLFNGMLIDGIRPNQVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDT 354

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            +E    +++L  + G +  A R V ++  E + I W  ++ A   H
Sbjct: 355 FIE--STLMNLYAKCGEIILA-RKVFNLSKEKDVISWNGMIAAYAHH 398



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/270 (26%), Positives = 118/270 (43%), Gaps = 59/270 (21%)

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +  A+ LFDR P + +V WT +++ YA +GM  +A  L+D       +PD        
Sbjct: 49  GRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFD-------RPD-------- 93

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
                                   + N     AL+  YA+ G +D A ++F  M ++++V
Sbjct: 94  -----------------------ARRNVVTWTALLSGYARAGRVDEAEALFGRMPERNVV 130

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           SWN ML      G+   A  LF+ M  +D G      ++  +L A   +G IDK  + F 
Sbjct: 131 SWNTMLEAYTSSGRVGDACTLFNGMPVRDAG------SWNILLAALVRSGNIDKARKLFD 184

Query: 437 SM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHN 494
            M ER+      V  +  M+  + RSG + EA  L   MP E N + W  ++ G  R H 
Sbjct: 185 RMPERN------VMAWTTMVAGIARSGSVNEARALFDGMP-ERNVVSWNAMISGYARNH- 236

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
              + +E  D  +++   D  ++ ++   F
Sbjct: 237 ---MIDEAHDLFMKMPTRDIASWNIMITGF 263



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 152/345 (44%), Gaps = 61/345 (17%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I+     + +  A ++F+ +   +V  + T++   +Q+  +  A ++F  M   G+  +
Sbjct: 259 MITGFIQNKNLERAQELFDKMPRRNVVTWTTMMNGYLQSIQSETALQLFNGMLIDGIRPN 318

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T+   + AC+        Q +H +I K  +  D F+ ++L++ Y+KCG   + LA+K+
Sbjct: 319 QVTFLGAVDACSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCG--EIILARKV 376

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEM 230
           F    E+D++SWN MIA     G   EA  L+++M E     + V++  +L   + +G +
Sbjct: 377 FNLSKEKDVISWNGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLV 436

Query: 231 NLAFELFE--------------------------------KIPHRNIVSWSTMVW----- 253
           +    +FE                                ++ H   V  S+ VW     
Sbjct: 437 DEGLRIFEYMVKDRSIAVRDEHYTCLIDLCSRAGRLGDAKRLIHFLKVEPSSTVWNALLG 496

Query: 254 -----GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                G    GD+  A+ L +  P      +T++ + YA  G  KEAA++  +M + GLK
Sbjct: 497 GCNSHGNESIGDLA-ARNLLEAEP-NNAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGLK 554

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
              G        C+    + +  KVH  +++ +    +++ N+L+
Sbjct: 555 KQPG--------CS---WIEVANKVHVFVSRDKSHSESDLINSLL 588



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 26/235 (11%)

Query: 27  CKNL---NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL   ++ +Q+   I K   Q D +I   L++  A C ++ LA KVFN  ++ DV  +
Sbjct: 329 CSNLAGLSEGQQVHQMICKTPFQFDTFIESTLMNLYAKCGEIILARKVFNLSKEKDVISW 388

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQM 136
           N +I A   + +  +A  ++  MQE G   ++ TY  LL AC+       G   F  +  
Sbjct: 389 NGMIAAYAHHGVGLEAIHLYEKMQENGYKPNDVTYVGLLSACSHSGLVDEGLRIFEYMVK 448

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL--FMSMGERDIVSWNSMIAGLV 194
             ++  +  ++        LID  S+ G +G   AK+L  F+ +     V WN+++ G  
Sbjct: 449 DRSIAVRDEHY------TCLIDLCSRAGRLGD--AKRLIHFLKVEPSSTV-WNALLGGCN 499

Query: 195 KGGELS----EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
             G  S     AR L +  P  +A ++  + + YA AG+   A ++  ++  R +
Sbjct: 500 SHGNESIGDLAARNLLEAEPN-NAGTYTLLCNIYASAGKWKEAAKIRSEMNDRGL 553



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 19/160 (11%)

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N  V   A  G + +A  +F+    +D+VSW A++   A  G    A  LF R       
Sbjct: 39  NRRVAELAAAGRVSDARRLFDRTPDRDVVSWTALVAAYACQGMLHDARALFDR------- 91

Query: 410 PDK----YTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRL 464
           PD      T+  +L     AG +D+    F  M ER+      V  +  M++    SGR+
Sbjct: 92  PDARRNVVTWTALLSGYARAGRVDEAEALFGRMPERN------VVSWNTMLEAYTSSGRV 145

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            +A  L   MPV  +A  W  LL A  +   ++ A ++ D
Sbjct: 146 GDACTLFNGMPVR-DAGSWNILLAALVRSGNIDKARKLFD 184


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/614 (32%), Positives = 314/614 (51%), Gaps = 52/614 (8%)

Query: 16  LLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           LL   L    +  +L+  +++F  +      R+ +    L+S+ A   +   A+ +F  I
Sbjct: 52  LLNTLLSAYARLGSLHDARRVFDGMP----HRNTFSYNALLSACARLGRADDALALFGAI 107

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            DPD   YN ++ A  Q+     A R    M       + +++   L AC  +      +
Sbjct: 108 PDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGE 167

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +HAL+ K  +  D+++  +L+D Y+KC       A+K+F +M ER+IVSWNS+I    +
Sbjct: 168 QVHALVTKSSHGSDVYIGTALVDMYAKCE--RPEEAQKVFDAMPERNIVSWNSLITCYEQ 225

Query: 196 GGELSEARRLFDEM------PER----------------------------------DAV 215
            G + EA  LF  M      P+                                   D V
Sbjct: 226 NGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMV 285

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
             N ++D YAK G    A  +F+++  R++VS ++M+ GY+K  ++  A+ +F +M  K 
Sbjct: 286 LNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKN 345

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V W ++I+ YA     +EA RL+ +++   + P   T  ++L ACA    L LG + H 
Sbjct: 346 VVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHV 405

Query: 336 SINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
            + K  F+ ++       V N+LVDMY K GS+ +   VF  M  +D VSWNAM+ G A 
Sbjct: 406 HVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQ 465

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G+ + AL LF RM      PD  T +GVL AC H+G + +G +YF SM  D+GI+P  +
Sbjct: 466 NGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYFQSMTEDHGIIPTRD 525

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY CMIDLLGR+G LKE   L+++MP+EP+A++W +LLGACR H  +++ E     L  L
Sbjct: 526 HYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKNIDMGEWAAGKLFEL 585

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
              + G Y +LSN++A  G W  V  VR  MK     K  G S +E+  +V+ F   D +
Sbjct: 586 DPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIEIGRKVNVFLARDNI 645

Query: 570 HPKSEQIYQMINTL 583
           HP   +I+  +  +
Sbjct: 646 HPCRNEIHDTLRII 659



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/418 (25%), Positives = 186/418 (44%), Gaps = 79/418 (18%)

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           + G+ F+ N+L+ +Y++ G   +  A+++F  M  R+  S+N++++   + G   +A  L
Sbjct: 46  FAGETFLLNTLLSAYARLG--SLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL 103

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFE------------------------------ 235
           F  +P+ D  S+N ++   A+ G    A                                
Sbjct: 104 FGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKAS 163

Query: 236 --------LFEKIPHRNIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
                   L  K  H + V   T +V  Y+K    E A+ +FD MP + +V W  +I+ Y
Sbjct: 164 RTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCY 223

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCN 345
            + G   EA  L+ +M + G  PD+ TL S+++ACA       G +VH  + K  RF+ +
Sbjct: 224 EQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRED 283

Query: 346 TNVCNALVDMYAKCG-------------------------------SLDNAMSVFNGMTK 374
             + NALVDMYAKCG                               ++ +A +VF  M +
Sbjct: 284 MVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVE 343

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K++V+WN ++   A + + E+AL LF R+K E   P  YT+  VL AC +   +  G Q 
Sbjct: 344 KNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQA 403

Query: 435 FYSMER-----DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
              + +     D G    V     ++D+  ++G + +  ++ + M    N + W  ++
Sbjct: 404 HVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDN-VSWNAMI 460



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 44/223 (19%)

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           F   T + N L+  YA+ GSL +A  VF+GM  ++  S+NA+L   A  G+ + AL LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-------------------- 441
            + D    PD+ ++  V+ A    G     +++  +M  D                    
Sbjct: 106 AIPD----PDQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEK 161

Query: 442 --------YGILPQVEHYG------CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
                   + ++ +  H         ++D+  +  R +EA ++  +MP E N + W +L+
Sbjct: 162 ASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMP-ERNIVSWNSLI 220

Query: 488 GACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFAATG 528
             C + N     +E L   +R+   G  P   T+ S + A  G
Sbjct: 221 -TCYEQNGP--VDEALALFVRMMKDGFVPDEVTLASVMSACAG 260


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 309/568 (54%), Gaps = 42/568 (7%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGK 128
           +VF+ + + DV  +N+L+     N L +++ RV+  M + G V  +  T+  +L   + +
Sbjct: 92  RVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNR 151

Query: 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
            +  L + IH  I+K GY   +FV + L+D Y+K G +  + A ++F  + E++IV +N+
Sbjct: 152 GFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFI--NDANRIFEEIPEKNIVVYNT 209

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP------- 241
           MI GL++   + EA +LFD MPE+D++SW TI+ G  + G    A + F+++        
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMD 269

Query: 242 --------------------------------HRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
                                             NI   S ++  Y K  +++ A+ +F 
Sbjct: 270 QFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFR 329

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           +M  K ++ WT ++ GY + G ++EA R++  M+   + PDD TL S++++CA    L  
Sbjct: 330 KMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEE 389

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G + H         C   V NAL+ +Y KCGSL++A  +F+ M  +D VSW A++ G A 
Sbjct: 390 GAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQ 449

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
            G+  + + LF  M   G  PD  TFVGVL AC+ AG ++KG  YF  M +++ I P  +
Sbjct: 450 FGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPD 509

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY CMIDLL R+GRL+EA   +  MP  P+AI W TLL +CR +  +E+ +   + L +L
Sbjct: 510 HYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKL 569

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  +P +Y +LS+I+AA G W+ VA +R  M++   +K  G S ++  N+VH FS  D+ 
Sbjct: 570 EPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRS 629

Query: 570 HPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            P S+QIY  + +L   +   G+   +S
Sbjct: 630 SPFSDQIYAKLESLYLKMIEEGYVPDMS 657



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 131/535 (24%), Positives = 222/535 (41%), Gaps = 111/535 (20%)

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
           + N+    L   C  +N    V+ +H  I +     + F+ N+LI++Y K G   +  A+
Sbjct: 4   SSNYYTAALKFCCEARNRAQ-VKKLHCRIIRTLTNPETFLYNNLINTYGKLG--DLKNAR 60

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA------- 225
            +F  + + ++ SWN++++   K G L + +R+FD MP  D VSWN++L GYA       
Sbjct: 61  NVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISE 120

Query: 226 ---------KAGEMNLAFELFEKI----PHRNIVSWSTMVWG------------------ 254
                    K G +NL    F  +     +R  V     + G                  
Sbjct: 121 SVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLV 180

Query: 255 --YSKDGDMEMAKLLFDRMPAKTLV-------------------------------PWTI 281
             Y+K G +  A  +F+ +P K +V                                WT 
Sbjct: 181 DMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTT 240

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           II+G  + G+ KEA   + +M   G   D  T  S+L AC     L  G ++HA I +  
Sbjct: 241 IITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTD 300

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           ++ N  V +AL+DMY KC ++  A +VF  M  K+++SW AML G   +G  E+A+ +F 
Sbjct: 301 YQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFC 360

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M+     PD +T   V+ +C +   +++G Q F+      G++  V     +I L G+ 
Sbjct: 361 DMQRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKC 419

Query: 462 GRLKEALRLVQSMPVE----------------------------------PNAIIWGTLL 487
           G L+ A +L   M +                                   P+ + +  +L
Sbjct: 420 GSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVL 479

Query: 488 GACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            AC +   VE      +C+++       P +YT + ++ +  G   +  N   QM
Sbjct: 480 SACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQM 534



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/375 (26%), Positives = 180/375 (48%), Gaps = 16/375 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +N   ++F +I     +++  +   +I+ L  CR +  A ++F+++ + D   + T+I  
Sbjct: 189 INDANRIFEEIP----EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITG 244

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN L  +A   F +M  +G   D FT+  +L AC G       + IHA I +  Y  +
Sbjct: 245 LTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           IFV ++L+D Y KC    V  A+ +F  M  ++++SW +M+ G  + G   EA R+F +M
Sbjct: 305 IFVGSALLDMYCKCR--NVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM 362

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MVWGYSKDGDM 261
                  D  +  +++   A    +    +   +     ++ + T    ++  Y K G +
Sbjct: 363 QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSL 422

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A  LF  M  +  V WT ++SGYA+ G A E   L++ M   G+ PD  T + +L+AC
Sbjct: 423 EHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSAC 482

Query: 322 AESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVS 379
           + +GL+  G       + ++R     +    ++D+ ++ G L+ A +  N M    D + 
Sbjct: 483 SRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIG 542

Query: 380 WNAMLYGLAMHGQGE 394
           W  +L    ++G  E
Sbjct: 543 WATLLSSCRLNGNLE 557



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 46/327 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++ KQ+ A II+ D Q + ++   L+     CR +  A  VF  ++  +V  +  ++  
Sbjct: 286 LDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVG 345

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN  + +A R+F DMQ   +  D+FT   ++ +C            H      G    
Sbjct: 346 YGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICF 405

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V N+LI  Y KCG   +  A +LF  M  RD VSW ++++G  + G+ +E   LF+ M
Sbjct: 406 VTVSNALITLYGKCG--SLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETM 463

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYSKDGD 260
                  D V++  +L   ++AG +   +  FE +   + ++     ++ M+   S+ G 
Sbjct: 464 LAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGR 523

Query: 261 MEMAKLLFDRMP-AKTLVPWTIIISG---------------------------------- 285
           +E AK   ++MP +   + W  ++S                                   
Sbjct: 524 LEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSI 583

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           YA KG   + A+L   M E G+K + G
Sbjct: 584 YAAKGKWDDVAKLRKGMREMGVKKEPG 610


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 195/582 (33%), Positives = 305/582 (52%), Gaps = 48/582 (8%)

Query: 55   LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
            L+S+ A   +   A  +F+ I DPD   YN +I A  Q+S  A A      M       +
Sbjct: 832  LLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLN 891

Query: 115  NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             +++   L AC  +        +HAL+ K  +  D+++ ++L+D Y+KC       A+++
Sbjct: 892  AYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCE--WPEEARRV 949

Query: 175  FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PER---------------- 212
            F +M ER+IVSWNS+I    + G + EA  LF  M      P+                 
Sbjct: 950  FEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAAD 1009

Query: 213  ------------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                              D V  N ++D YAK G    A  +F+++  R++VS ++++ G
Sbjct: 1010 REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITG 1069

Query: 255  YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            Y++  ++E A+++F +M  K ++ W ++I+ YA+ G  +EA RL+ +++   + P   T 
Sbjct: 1070 YARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWPTHYTY 1129

Query: 315  ISILAACAESGLLGLGMKVHASINK--YRF----KCNTNVCNALVDMYAKCGSLDNAMSV 368
             ++L AC     L LG + H  + K  +RF    + +  V N+LVDMY K GS+D+   V
Sbjct: 1130 GNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKV 1189

Query: 369  FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
            F  M  +D VSWNAM+ G A +G+ + AL LF RM      PD  T +GVL AC H+G +
Sbjct: 1190 FERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLV 1249

Query: 429  DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            ++G +YF SM  D+GI+P  +HY CMIDLLGR+G LKE   L++ M +EP+A++W +LLG
Sbjct: 1250 EEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLG 1309

Query: 489  ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
            +CR H  VE+ E     L  L   + G Y +LSN++A  G W  V  VR  MK     K 
Sbjct: 1310 SCRLHKNVEMGEWAAGKLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQ 1369

Query: 549  SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             G S +E+  +V  F   D  HP   +I+ ++  +   +  V
Sbjct: 1370 PGCSWIEIGRKVSVFLARDNGHPCKNEIHAILRIIQMQMSRV 1411



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/522 (29%), Positives = 256/522 (49%), Gaps = 45/522 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +C +L   +QL   I K D Q +  +   L+     C  +  A + F+DI +P+   +N 
Sbjct: 163 ECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNV 222

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++R      +   A  +F  M   GV    +T    + AC   N     + IHA + + G
Sbjct: 223 IVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHG 282

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           Y   + V +S++D Y+KCG +    A+ LF     +D+V   S+++GL   G +++A+R+
Sbjct: 283 YEHHVHVRSSVVDMYAKCGAMDA--AQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRV 340

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----------NIVSWST----- 250
           F+ M ER+ VSWN +L GY ++ ++  A  LF+++             +++S  T     
Sbjct: 341 FEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDI 400

Query: 251 ------------------------MVWGYSKDGDMEMAK--LLFDRMPAKTLVPWTIIIS 284
                                   +V  YSK G +  A+  LLF+    +    W  +IS
Sbjct: 401 GKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLIS 460

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GY    M++ A     +M+ + + P+  T  S LAACA   LL  GM++HA + +  ++ 
Sbjct: 461 GYERHSMSEAALYALTKMQ-SEVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEI 519

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +  + + L+DMY KC   D ++ +F     +D++ WN+M++G A  G+GE  L LF  M+
Sbjct: 520 DDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQ 579

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            +G   D  TF+G L +C   G +  G  YF  M  D  I+P++EHY CMI+LLG+ G +
Sbjct: 580 KQGIKADSVTFLGALVSCISEGHVRLGRSYFTLM-MDESIIPRIEHYECMIELLGKHGCM 638

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            E    V+ MP EP   +W  +   CR++   +L E    C+
Sbjct: 639 VELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCI 680



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/421 (27%), Positives = 199/421 (47%), Gaps = 50/421 (11%)

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           F+ N  I+S + CG   V+ A++LF  M  RD  SWN++I    + G  SEA  LF  M 
Sbjct: 86  FLFNRAIESLAACG--SVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMN 143

Query: 211 E-----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDM 261
                 +DA +  ++L   A+  ++  A +L   I  R    N++  + +V  Y     +
Sbjct: 144 SLGIRPKDA-TMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLL 202

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A+  FD +     + W +I+  Y   GM   A  ++ +M  AG++P   T+   + AC
Sbjct: 203 ADARRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLAC 262

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN----------- 370
            ++  L  G  +HA + ++ ++ + +V +++VDMYAKCG++D A S+FN           
Sbjct: 263 RDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMST 322

Query: 371 --------------------GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
                               GM +++LVSWNAML G         AL LF +M+ E    
Sbjct: 323 SIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREF 382

Query: 411 DKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           D  T   VL ACT    I KG + + ++++  +   P +++   ++ +  + G L+ A R
Sbjct: 383 DAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKN--ALVRMYSKCGCLRSAER 440

Query: 470 LVQ-SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           L+   M  E ++  W +L+    +H+   ++E  L  L +++     N +  S+  AA  
Sbjct: 441 LLLFEMGSERDSYSWNSLISGYERHS---MSEAALYALTKMQSEVTPNQSTFSSALAACA 497

Query: 529 D 529
           +
Sbjct: 498 N 498



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 131/546 (23%), Positives = 224/546 (41%), Gaps = 112/546 (20%)

Query: 24   LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            L    NL   +   A+ +K     + ++   L+S+ A   ++  A +VF++I  P+   Y
Sbjct: 770  LRSAPNLPAARAAHARALKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSY 829

Query: 84   NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            N L+ A  +    A A  +F  + +    + N     L +   G +         AL++ 
Sbjct: 830  NALLSAHARLGRPADARALFHAIPDPDQCSYNAVIAALAQHSRGAD---------ALLFL 880

Query: 144  CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                 D FV N+             S A  L     E+D  +   + A            
Sbjct: 881  AAMHADDFVLNAY------------SFASALSACAAEKDSRTGVQVHA------------ 916

Query: 204  RLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
             L  + P  +D    + +LD YAK      A  +FE +P RNIVSW++++  Y ++G + 
Sbjct: 917  -LVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPV- 974

Query: 263  MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
                                           EA  L+  M +AG  PD+ TL S+++ACA
Sbjct: 975  ------------------------------GEALVLFVSMMKAGFVPDEVTLASVMSACA 1004

Query: 323  ESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCG--------------------- 360
                   G +VHA + K  RF+ +  + NALVDMYAKCG                     
Sbjct: 1005 GLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSET 1064

Query: 361  ----------SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
                      ++++A  VF+ M +K++++WN ++   A +G+ E+AL LF R+K E   P
Sbjct: 1065 SLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWP 1124

Query: 411  DKYTFVGVLCACTHAGFIDKGVQYFYSMER-----DYGILPQVEHYGCMIDLLGRSGRLK 465
              YT+  VL AC +   +  G Q    + +     D+G    V     ++D+  ++G + 
Sbjct: 1125 THYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184

Query: 466  EALRLVQSMPVEPNAIIWGTLLGAC---RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
            +  ++ + M    N      ++G     R  +A+ L E +L          P + TM+  
Sbjct: 1185 DGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERML-----CSKESPDSVTMI-G 1238

Query: 523  IFAATG 528
            + +A G
Sbjct: 1239 VLSACG 1244



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 39/353 (11%)

Query: 218  NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
            NT++  YA+ G +  A  +F++IPH N  S++ ++  +++ G    A+ LF  +P     
Sbjct: 799  NTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQC 858

Query: 278  PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
             +  +I+  A+     +A      M       +  +  S L+ACA       G++VHA +
Sbjct: 859  SYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALV 918

Query: 338  NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            +K     +  + +AL+DMYAKC   + A  VF  M ++++VSWN+++     +G   +AL
Sbjct: 919  SKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEAL 978

Query: 398  GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
             LF  M   GF PD+ T   V+ AC       +G Q    + +       +     ++D+
Sbjct: 979  VLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDM 1038

Query: 458  LGRSGRLK------------------------------EALRLVQSMPVEPNAIIWGTLL 487
              + GR +                              E  ++V S  VE N I W  L+
Sbjct: 1039 YAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLI 1098

Query: 488  GACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFAATGDWNKVANVRL 538
             A    N  E  EE L   +RLK     P +YT   N+  A G+   VA+++L
Sbjct: 1099 AA-YAQNGEE--EEALRLFVRLKRESVWPTHYT-YGNVLNACGN---VADLQL 1144



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 84/183 (45%), Gaps = 9/183 (4%)

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
           T + N  ++  A CGS+ +A  +F+ M  +D  SWNA++   +  G   +AL LFS M  
Sbjct: 85  TFLFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNS 144

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            G  P   T   VL  C     +    Q + +  +RD+     V     ++D+ G    L
Sbjct: 145 LGIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQ--SNVILGTALVDVYGNCFLL 202

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSN 522
            +A R    + +EPNAI W  ++   R+++   + +  +D   R+   G  P  YT+   
Sbjct: 203 ADARRAFDDI-LEPNAISWNVIV---RRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHA 258

Query: 523 IFA 525
           + A
Sbjct: 259 VLA 261


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 290/573 (50%), Gaps = 79/573 (13%)

Query: 61  LCRQMGL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTY 118
           LC+Q  L  A+++ + I  P   +Y+TLI++C+++ L  Q  +V                
Sbjct: 49  LCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQGKKV---------------- 92

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
                              H  I   G+   +F+ N L++ Y+KC  +  S  +KLF  M
Sbjct: 93  -------------------HQHIKLSGFVPGLFILNRLLEMYAKCDSLMDS--QKLFDEM 131

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE 238
            ERD+ SWN +I+G  K G L EA+ LFD+MPERD  SW  ++ GY +    N A ELF 
Sbjct: 132 PERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFR 191

Query: 239 -----------------------KIPHRNI-----------------VSWSTMVWGYSKD 258
                                   +P   I                 V WS +   Y K 
Sbjct: 192 MMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKC 251

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +E A+ +FD+M  + +V WT +I  Y + G  KE   L+  +  +G++P++ T   +L
Sbjct: 252 GSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVL 311

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA      LG KVH  + +  F   +   +ALV MY+KCG++ +A  VF    + DL 
Sbjct: 312 NACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLF 371

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW +++ G A +GQ ++A+  F  +   G  PD  TFVGVL AC HAG +DKG+ YF+S+
Sbjct: 372 SWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSI 431

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           +  YG+    +HY C+IDLL RSG+  EA  ++  M ++P+  +W +LLG CR H  ++L
Sbjct: 432 KEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKL 491

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           A+   + L  ++  +P  Y  L+NI+A  G W++VA +R  M      K  G S + +  
Sbjct: 492 AQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKR 551

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +VH F V D  HPKS++I + +  L K +K  G
Sbjct: 552 DVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEG 584



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 183/399 (45%), Gaps = 29/399 (7%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           P  F   RLLE       KC +L  +++LF ++     +RD      LIS  A   +MGL
Sbjct: 103 PGLFILNRLLE----MYAKCDSLMDSQKLFDEMP----ERDLCSWNILISGYA---KMGL 151

Query: 68  ---AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLK 123
              A  +F+ + + D   +  +I   V++    +A  +F  M+       N FT    L 
Sbjct: 152 LQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALA 211

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           A        + + IH  I + G   D  V ++L D Y KCG   +  A+ +F  M +RDI
Sbjct: 212 AAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCG--SIEEARHIFDKMVDRDI 269

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           V+W +MI    + G   E   LF ++             G   A     + EL +K+ H 
Sbjct: 270 VTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKV-HG 328

Query: 244 NIV---------SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            +          + S +V  YSK G+M  A+ +F   P   L  WT +I+GYA+ G   E
Sbjct: 329 YMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDE 388

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALV 353
           A R ++ + ++G +PD  T + +L+ACA +GL+  G+    SI  +Y      +    ++
Sbjct: 389 AIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACII 448

Query: 354 DMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHG 391
           D+ A+ G  D A ++ + M+ K D   W ++L G  +HG
Sbjct: 449 DLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHG 487



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 166/398 (41%), Gaps = 52/398 (13%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++   I++  L  D  +   L      C  +  A  +F+ + D D+  +  +I    Q+
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               + F +F D+   G+  + FT+  +L AC  +    L + +H  + + G+    F  
Sbjct: 283 GRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAA 342

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           ++L+  YSKCG   +  A+++F    + D+ SW S+IAG  + G+  EA R F+ +    
Sbjct: 343 SALVHMYSKCG--NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSG 400

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
            + D +++  +L   A AG ++   + F  I  +         +G +   D         
Sbjct: 401 TQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQ---------YGLTHTADH-------- 443

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
                    +  II   A  G   EA  +  +M    +KPD     S+L  C   G L L
Sbjct: 444 ---------YACIIDLLARSGQFDEAENIISKM---SMKPDKFLWASLLGGCRIHGNLKL 491

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF-----NGMTKKDLVSWNAM- 383
             +   ++ +   + N      L ++YA  G       +       G+ KK  +SW A+ 
Sbjct: 492 AQRAAEALFEIEPE-NPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIK 550

Query: 384 ------LYGLAMHGQGEKA---LGLFS-RMKDEGFGPD 411
                 L G   H + ++    LG  S RMK+EGF PD
Sbjct: 551 RDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPD 588


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 163/385 (42%), Positives = 253/385 (65%), Gaps = 2/385 (0%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEK-IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           D+     +L  YA+AG+   A  LF+  +P  ++VS + M+  Y+  G ++ A+ LFD +
Sbjct: 420 DSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGL 479

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P K  V W  +I GY + G   EA RL+ +M  +G++PD+ T++ +L+A A+ G +  G 
Sbjct: 480 PTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGK 539

Query: 332 KVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            +H+ + N  R + +  V  AL+DMY KCGSL +A+ VF+G+  KD+V WNAM+ G AMH
Sbjct: 540 WLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMH 599

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G   KAL +F + +++G  P   TF+G+L AC+H+G +++G ++F SMER+YGI P++EH
Sbjct: 600 GDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEH 659

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+DLLGR+G +KEA  LVQSM + P+A++W +LL ACR H  + L +++ D L+   
Sbjct: 660 YGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKG 719

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
            ++ G Y +LSNI+AA G+W +VA VR  MK +  QK  G SS+E+D EV+EF   D  H
Sbjct: 720 LANSGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSH 779

Query: 571 PKSEQIYQMINTLGKDLKPVGHAAK 595
           P++++IY M++ +   +K  GH  +
Sbjct: 780 PRTDEIYVMLDKMNGLVKEHGHVPQ 804



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 171/412 (41%), Gaps = 50/412 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDL--QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           L  C    +  +L A +++  L    D  +A +L  + A   ++ L++ +    +DP   
Sbjct: 296 LTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAI 355

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            Y + I A         A  +  DM  +G+     T    L AC G       + +H   
Sbjct: 356 FYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHTLSASLPACRG---LSPGRALHGYA 412

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM-GERDIVSWNSMIAGLVKGGELS 200
           +K    GD +V  +L+  Y++ G    + A+ LF  M  +  +VS  +M+      G L 
Sbjct: 413 FKLALAGDSYVATALLGMYARAG--DATAARALFDDMLPDPHVVSVTAMLTCYADMGALD 470

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIV-------- 246
           +AR LFD +P +D V WN ++DGY + G  N A  LF ++      P    V        
Sbjct: 471 DARSLFDGLPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVA 530

Query: 247 --------SW------------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                    W                  + ++  Y K G +  A  +F  +  K +V W 
Sbjct: 531 QLGTVESGKWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWN 590

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK- 339
            +I+GYA  G +++A  ++ Q  E GL P D T I +L AC+ SG++  G +   S+ + 
Sbjct: 591 AMINGYAMHGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMERE 650

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
           Y           +VD+  + G +  A  +   M    D V W ++L    +H
Sbjct: 651 YGIDPKIEHYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLH 702


>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 158/385 (41%), Positives = 256/385 (66%), Gaps = 2/385 (0%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             ++D Y+K G+++LA+ +F+++  RN VSW+TM+ G  ++G++  A +LFD+M  +  +
Sbjct: 131 TALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAI 190

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +I G+ +KG  ++A   + +M+ AG++PD  T+IS+LAACA  G LGLG+ ++  +
Sbjct: 191 SWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLAACANLGALGLGLWINRFV 250

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  FK N  + N+L+DMY++CG +  A  VF  M K+ LVSWN+M+ G A++G  E+AL
Sbjct: 251 MKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQMPKRSLVSWNSMIVGFALNGHAEEAL 310

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
             F+ M+ EGF PD  +F G L AC+H+G +D+G+Q+F  M+R   I P++EHYGC++DL
Sbjct: 311 EFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDL 370

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
             R+GRL++AL ++ +MP++PN ++ G+LL ACR H  V LAE ++  L  +      NY
Sbjct: 371 YSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNY 430

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+AA G W+  + VR +MK     K  G SS+E+D  +HEF   D+ H +++ IY
Sbjct: 431 VLLSNIYAAVGRWDGASKVRKKMKALGIHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIY 490

Query: 578 QMINTLGKDLKPVGHAAKLSAEIGE 602
            M++ L  +L+  G+  ++  E+G+
Sbjct: 491 AMLDHLFLELRICGYVPEI--EVGK 513



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 178/374 (47%), Gaps = 57/374 (15%)

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           DP V   +++   C    L  +A   F  MQ  GV  ++ T+  LL AC     F L  +
Sbjct: 52  DPIVSWTSSIALHCRNGQL-PEAAAEFSRMQIAGVRPNHITFLTLLSACTD---FPLEGL 107

Query: 137 -----IHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
                IHA + K G    ++ V  +L+D YSKCG   + LA  +F  M  R+ VSWN+MI
Sbjct: 108 RFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCG--QLDLAWLMFDEMHVRNSVSWNTMI 165

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP--------- 241
            G ++ GE+ EA  LFD+M ERDA+SW +++ G+ K G    A E F ++          
Sbjct: 166 DGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYV 225

Query: 242 ------------------------------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
                                           NI   ++++  YS+ G + +A+ +F++M
Sbjct: 226 TIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVFEQM 285

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P ++LV W  +I G+A  G A+EA   ++ M + G +PD  +    L AC+ SGL+  G+
Sbjct: 286 PKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGL 345

Query: 332 KVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAM 389
           +    + + R           LVD+Y++ G L++A++V   M  K + V   ++L     
Sbjct: 346 QFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEVVLGSLLAACRT 405

Query: 390 HGQGEKALGLFSRM 403
           HG     +GL  R+
Sbjct: 406 HGD----VGLAERL 415



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 148/316 (46%), Gaps = 45/316 (14%)

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL-- 329
           P   +V WT  I+ +   G   EAA  + +M+ AG++P+  T +++L+AC +  L GL  
Sbjct: 50  PIDPIVSWTSSIALHCRNGQLPEAAAEFSRMQIAGVRPNHITFLTLLSACTDFPLEGLRF 109

Query: 330 GMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLD------------------------- 363
           G  +HA + K      N  V  ALVDMY+KCG LD                         
Sbjct: 110 GGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAWLMFDEMHVRNSVSWNTMIDGCM 169

Query: 364 ------NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
                  A+ +F+ M+++D +SW +M+ G    G  E+AL  F  M+  G  PD  T + 
Sbjct: 170 RNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIIS 229

Query: 418 VLCACTHAGFIDKGVQY-FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           VL AC + G +  G+    + M++D+     ++    +ID+  R G ++ A ++ + MP 
Sbjct: 230 VLAACANLGALGLGLWINRFVMKQDFK--DNIKISNSLIDMYSRCGCIRLARQVFEQMP- 286

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           + + + W +++     +   E A E  + L+R +G  P   +    + A +   + + + 
Sbjct: 287 KRSLVSWNSMIVGFALNGHAEEALEFFN-LMRKEGFRPDGVSFTGALTACSH--SGLVDE 343

Query: 537 RLQ----MKKTRAQKP 548
            LQ    MK+TR   P
Sbjct: 344 GLQFFDIMKRTRKISP 359



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 139/319 (43%), Gaps = 48/319 (15%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++G AI +F+ + + D   + ++I   V+     QA   F +MQ  GV  D  T   +L 
Sbjct: 173 EVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQALEWFREMQLAGVEPDYVTIISVLA 232

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC       L   I+  + K  +  +I + NSLID YS+CG   + LA+++F  M +R +
Sbjct: 233 ACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGC--IRLARQVFEQMPKRSL 290

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE- 238
           VSWNSMI G    G   EA   F+ M +     D VS+   L   + +G ++   + F+ 
Sbjct: 291 VSWNSMIVGFALNGHAEEALEFFNLMRKEGFRPDGVSFTGALTACSHSGLVDEGLQFFDI 350

Query: 239 -----KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
                KI  R I  +  +V  YS+ G +E A  +   MP                     
Sbjct: 351 MKRTRKISPR-IEHYGCLVDLYSRAGRLEDALNVIANMP--------------------- 388

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
                        +KP++  L S+LAAC   G +GL  ++   + +     ++N    L 
Sbjct: 389 -------------MKPNEVVLGSLLAACRTHGDVGLAERLMKYLCEVDPGSDSNYV-LLS 434

Query: 354 DMYAKCGSLDNAMSVFNGM 372
           ++YA  G  D A  V   M
Sbjct: 435 NIYAAVGRWDGASKVRKKM 453


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 204/619 (32%), Positives = 313/619 (50%), Gaps = 75/619 (12%)

Query: 24  LHKCKNL---NQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ C  L   N   ++   +IKL    DP+ A  L+   A       AI VF +I  PD+
Sbjct: 195 LNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDI 254

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N +I  CV +  N  A ++   M    V    FT    LKAC       L + +H+ 
Sbjct: 255 VSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSA 314

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K     D FV   LID YSKCG+                                 L 
Sbjct: 315 LMKMDMEPDSFVGVGLIDMYSKCGL---------------------------------LQ 341

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAG----EMNLAFELFEKIPHRNIVSWSTMV---- 252
           +AR +FD MP +D + WN+I+ GY+  G     M+L   ++++    N  + ST++    
Sbjct: 342 DARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTA 401

Query: 253 -----------------WGYSKDGD--------------MEMAKLLFDRMPAKTLVPWTI 281
                             GY  DG               +E A  +F+  PA+ LV +T 
Sbjct: 402 GSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTS 461

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I+ Y++ G+ +EA ++Y +M++  +KPD     S+  ACA       G ++H  + K  
Sbjct: 462 MITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCG 521

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
              +    N+LV+MYAKCGS+D+A  +FN ++ + +VSW+AM+ GLA HG G KAL LF 
Sbjct: 522 LLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFY 581

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +M   G  P+  T V VL AC HAG + +  ++F  ME+ +GI P  EHY CM+D+LGR 
Sbjct: 582 QMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRV 641

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           GRL EA+ LV+ MP + +A +WG LLGA R H  +EL     + L+ L+    G + +L+
Sbjct: 642 GRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLA 701

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+A+TG W+ VA VR  MK +  +K  G S +E+ ++V+ F V D+ HP+S++IY  ++
Sbjct: 702 NIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLD 761

Query: 582 TLGKDLKPVGHAAKLSAEI 600
            L + L   G+   +  ++
Sbjct: 762 DLRERLTSAGYVPMIETDL 780



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 139/512 (27%), Positives = 239/512 (46%), Gaps = 53/512 (10%)

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           C+   +A K+  D  +PD+  ++ LI   VQN    +A   + +M   G   + FT+  +
Sbjct: 95  CQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSV 154

Query: 122 LKACN-------GK------------------NWFHLVQM---------------IHALI 141
           LK C+       GK                  N F L  +               +H  +
Sbjct: 155 LKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYL 214

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K GY  D F  N+L+D Y+K G    ++A  +F  + + DIVSWN++IAG V   +   
Sbjct: 215 IKLGYDSDPFSANALLDMYAKSGCPEAAIA--VFYEIPKPDIVSWNAVIAGCVLHEKNDL 272

Query: 202 ARRLFDEMPE-RDAVSWNTI---LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG--- 254
           A +L  +M   R A S  T+   L   A  G + L  +L   +   ++   S +  G   
Sbjct: 273 ALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLID 332

Query: 255 -YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK G ++ A+++FD MP K ++ W  IISGY+  G   EA  L+  M + GL+ +  T
Sbjct: 333 MYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTT 392

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L +IL + A S   G   +VH    K  ++ +  V N+L+D Y KC  L++A  VF    
Sbjct: 393 LSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCP 452

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            +DLV++ +M+   + +G GE+AL ++ RM+D    PD + F  +  AC +    ++G Q
Sbjct: 453 AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQ 512

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
               + +  G+L  V     ++++  + G + +A  +   +      + W  ++G   +H
Sbjct: 513 IHVHVLK-CGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQH 570

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
                A ++   +++  G  P + T++S + A
Sbjct: 571 GHGRKALQLFYQMLK-NGILPNHITLVSVLSA 601



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 130/273 (47%), Gaps = 11/273 (4%)

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM----PAKTLVPW 279
           Y+K     +A +L       ++VSWS ++ GY ++G  E A L +  M           +
Sbjct: 92  YSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTF 151

Query: 280 TIIISGYA-----EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
           + ++ G +     E G       L  +M   G+ P++ +L ++L ACA       GMKVH
Sbjct: 152 SSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVH 211

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
             + K  +  +    NAL+DMYAK G  + A++VF  + K D+VSWNA++ G  +H + +
Sbjct: 212 GYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKND 271

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
            AL L  +M      P  +T    L AC   G +  G Q  +S      + P       +
Sbjct: 272 LALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQ-LHSALMKMDMEPDSFVGVGL 330

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           ID+  + G L++A  +   MP + + I+W +++
Sbjct: 331 IDMYSKCGLLQDARMVFDLMPXK-DVIVWNSII 362


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 186/531 (35%), Positives = 292/531 (54%), Gaps = 8/531 (1%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           A KVF+ + + D  L+NT+I    +N +  ++ +VF D+  E     D  T   +L A  
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                 L   IH+L  K G +   +V    I  YSKCG   + +   LF    + DIV++
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG--KIKMGSALFREFRKPDIVAY 290

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDA-VSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           N+MI G    GE   +  LF E+    A +  +T++     +G + L + +       N 
Sbjct: 291 NAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNF 350

Query: 246 VSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           +S +++       YSK  ++E A+ LFD  P K+L  W  +ISGY + G+ ++A  L+ +
Sbjct: 351 LSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M+++   P+  T+  IL+ACA+ G L LG  VH  +    F+ +  V  AL+ MYAKCGS
Sbjct: 411 MQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGS 470

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +  A  +F+ MTKK+ V+WN M+ G  +HGQG++AL +F  M + G  P   TF+ VL A
Sbjct: 471 IAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYA 530

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+HAG + +G + F SM   YG  P V+HY CM+D+LGR+G L+ AL+ +++M +EP + 
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSS 590

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W TLLGACR H    LA  V + L  L   + G + +LSNI +A  ++ + A VR   K
Sbjct: 591 VWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAK 650

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           K +  K  G + +E+    H F+  DQ HP+ ++IY+ +  L   ++  G+
Sbjct: 651 KRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGY 701



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/545 (22%), Positives = 218/545 (40%), Gaps = 84/545 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +  +++   Q  AQII    + D  +  KL   L+    +  A  +F  +Q PDV L+N 
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKC 144
           L+R    N     +  VF  +++      N  TY F + A +G              ++ 
Sbjct: 89  LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASG--------------FRD 134

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
              G +    +++D      ++G ++ K  F                   K   + +AR+
Sbjct: 135 DRAGRVIHGQAVVDGCDSELLLGSNIVKMYF-------------------KFWRVEDARK 175

Query: 205 LFDEMPERDAVSWNTILDGY------------------------------------AKAG 228
           +FD MPE+D + WNT++ GY                                    A+  
Sbjct: 176 VFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQ 235

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
           E+ L  ++          S   ++ G    YSK G ++M   LF       +V +  +I 
Sbjct: 236 ELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIH 295

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GY   G  + +  L+ ++  +G +    TL+S++     SG L L   +H    K  F  
Sbjct: 296 GYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPV---SGHLMLIYAIHGYCLKSNFLS 352

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           + +V  AL  +Y+K   +++A  +F+   +K L SWNAM+ G   +G  E A+ LF  M+
Sbjct: 353 HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQ 412

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
              F P+  T   +L AC   G +  G ++ + + R       +     +I +  + G +
Sbjct: 413 KSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSN 522
            EA RL   M  + N + W T++     H      +E L+    +   G  P   T L  
Sbjct: 472 AEARRLFDLM-TKKNEVTWNTMISGYGLHGQ---GQEALNIFYEMLNSGITPTPVTFLCV 527

Query: 523 IFAAT 527
           ++A +
Sbjct: 528 LYACS 532



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 159/351 (45%), Gaps = 15/351 (4%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
           Y+    IS  + C ++ +   +F + + PD+  YN +I     N     +  +F ++   
Sbjct: 257 YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLS 316

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           G    + T   L+          L+  IH    K  +     V  +L   YSK     + 
Sbjct: 317 GARLRSSTLVSLVPV---SGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLN--EIE 371

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYA 225
            A+KLF    E+ + SWN+MI+G  + G   +A  LF EM + +     V+   IL   A
Sbjct: 372 SARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACA 431

Query: 226 KAGEMNL---AFELFEKIPHRNIVSWSTMVWG-YSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           + G ++L     +L       + +  ST + G Y+K G +  A+ LFD M  K  V W  
Sbjct: 432 QLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNT 491

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS-INKY 340
           +ISGY   G  +EA  ++ +M  +G+ P   T + +L AC+ +GL+  G ++  S I++Y
Sbjct: 492 MISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRY 551

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAMLYGLAMH 390
            F+ +      +VD+  + G L  A+     M+ +   S W  +L    +H
Sbjct: 552 GFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIH 602



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 140/319 (43%), Gaps = 21/319 (6%)

Query: 215 VSWNTILDGYAKAGEM-NLAFELFEKIPH--RNIVSWSTMVWGYSKD-GDMEMAKLLFDR 270
           +S NT LD + ++  + +LA    + I H  RN +S  T +     D G +  A+ +F  
Sbjct: 18  ISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLG- 328
           +    +  + +++ G++       +  ++  + ++  LKP+  T     A  A SG    
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA--FAISAASGFRDD 135

Query: 329 -LGMKVH--ASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
             G  +H  A ++     C++ +   + +V MY K   +++A  VF+ M +KD + WN M
Sbjct: 136 RAGRVIHGQAVVDG----CDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTM 191

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           + G   +    +++ +F  + +E     D  T + +L A      +  G+Q  +S+    
Sbjct: 192 ISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQ-IHSLATKT 250

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G           I L  + G++K    L +    +P+ + +  ++     +   EL+  +
Sbjct: 251 GCYSHDYVLTGFISLYSKCGKIKMGSALFREFR-KPDIVAYNAMIHGYTSNGETELSLSL 309

Query: 503 LDCLIRLKGSDPGNYTMLS 521
              L+ L G+   + T++S
Sbjct: 310 FKELM-LSGARLRSSTLVS 327



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 78/198 (39%), Gaps = 33/198 (16%)

Query: 44  DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           D +   Y++  LI   A C  +  A ++F+ +   +   +NT+I     +    +A  +F
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIF 509

Query: 104 LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
            +M   G+     T+  +L AC+           HA + K G   +IF  NS+I  Y   
Sbjct: 510 YEMLNSGITPTPVTFLCVLYACS-----------HAGLVKEG--DEIF--NSMIHRYG-- 552

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILD 222
                           E  +  +  M+  L + G L  A +  + M  E  +  W T+L 
Sbjct: 553 ---------------FEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 597

Query: 223 GYAKAGEMNLAFELFEKI 240
                 + NLA  + EK+
Sbjct: 598 ACRIHKDTNLARTVSEKL 615


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 329/604 (54%), Gaps = 43/604 (7%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+   I+K+   +D ++   L+   A C ++  A KVF+++ + +V  + ++I    +  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 95  LNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               A  +F  M +++ V  ++ T   ++ AC         + ++A I   G   +  + 
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           ++L+D Y KC  + V  AK+LF   G  ++   N+M +  V+ G   EA  +F+ M    
Sbjct: 275 SALVDMYMKCNAIDV--AKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSG 332

Query: 210 --PERDAV-----------------------------SW----NTILDGYAKAGEMNLAF 234
             P+R ++                             SW    N ++D Y K    + AF
Sbjct: 333 VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 392

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            +F+++ ++ +V+W+++V GY ++G+++ A   F+ MP K +V W  IISG  +  + +E
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 295 AARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           A  ++  M+ + G+  D  T++SI +AC   G L L   ++  I K   + +  +   LV
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DM+++CG  ++AMS+FN +T +D+ +W A +  +AM G  E+A+ LF  M ++G  PD  
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
            FVG L AC+H G + +G + FYSM + +G+ P+  HYGCM+DLLGR+G L+EA++L++ 
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP+EPN +IW +LL ACR    VE+A    + +  L     G+Y +LSN++A+ G WN +
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           A VRL MK+   +KP G SS+++  + HEF+  D+ HP+   I  M++ + +    +GH 
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 594 AKLS 597
             LS
Sbjct: 753 PDLS 756



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 150/586 (25%), Positives = 261/586 (44%), Gaps = 82/586 (13%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---SLALCRQ 64
           P+  ++ +  +    +L  CK +++ K     + K  L  D     KL++    L     
Sbjct: 23  PSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGLDNDVSTITKLVARSCELGTRES 82

Query: 65  MGLAIKVFNDIQD-PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           +  A +VF + +      +YN+LIR    + L  +A  +FL M   G+  D +T+PF L 
Sbjct: 83  LSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLS 142

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC           IH LI K GY  D+FV NSL+  Y++CG   +  A+K+F  M ER++
Sbjct: 143 ACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECG--ELDSARKVFDEMSERNV 200

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI-----LDGYAKAGEMNLAFELFE 238
           VSW SMI G  +     +A  LF  M   + V+ N++     +   AK  ++    +++ 
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260

Query: 239 KIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            I +  I    +  S +V  Y K   +++AK LFD   A  L     + S Y  +G+ +E
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTRE 320

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  +++ M ++G++PD  +++S +++C++   +  G   H  + +  F+   N+CNAL+D
Sbjct: 321 ALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALID 380

Query: 355 MYAKC-------------------------------GSLDNAMSVFNGMTKKDLVSWNAM 383
           MY KC                               G +D A   F  M +K++VSWN +
Sbjct: 381 MYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTI 440

Query: 384 LYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           + GL      E+A+ +F  M+  EG   D  T + +  AC H G +D     +Y +E++ 
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKN- 499

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--------------------------- 475
           GI   V     ++D+  R G  + A+ +  S+                            
Sbjct: 500 GIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELF 559

Query: 476 -------VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
                  ++P+ + +   L AC     V+  +E+   +++L G  P
Sbjct: 560 DDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 93/213 (43%), Gaps = 19/213 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  K ++  I K  +Q D  +   L+   + C     A+ +FN + + DV  +   I A
Sbjct: 486 LDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 545

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
                   +A  +F DM E+G+  D   +   L AC+       GK  F+ +  +H +  
Sbjct: 546 MAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSP 605

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  ++G       ++D   + G++  ++     M M   D++ WNS++A     G +  A
Sbjct: 606 EDVHYG------CMVDLLGRAGLLEEAVQLIEDMPMEPNDVI-WNSLLAACRVQGNVEMA 658

Query: 203 RRLFDEM----PERDAVSWNTILDGYAKAGEMN 231
               +++    PER   S+  + + YA AG  N
Sbjct: 659 AYAAEKIQVLAPERTG-SYVLLSNVYASAGRWN 690


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 198/605 (32%), Positives = 310/605 (51%), Gaps = 80/605 (13%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           + KQ+   ++KL    D Y+   LI+  ++C  M  A +VFN+    D   +N+++   +
Sbjct: 231 EAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYI 290

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +     +A  ++  M E+                                        I 
Sbjct: 291 EIGNVEEAKHIYHQMPERS---------------------------------------II 311

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF----- 206
             NS+I  +   G+V    A KLF  M E+D+V+W+++IA   +     EA R F     
Sbjct: 312 ASNSMIVLFGMRGLV--VEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 369

Query: 207 -----DEMPERDAVS-----------------------------WNTILDGYAKAGEMNL 232
                DE+    A+S                              N ++  Y+K G++ +
Sbjct: 370 IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMV 429

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A +LF++    +++SW++M+ GY K   ++ AK +FD MP K +V W+ +ISGYA+  + 
Sbjct: 430 ARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLF 489

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
            E   L+ +M+ +G KPD+ TL+S+++ACA    L  G  VHA I +     N  +   L
Sbjct: 490 DETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTL 549

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +DMY KCG ++ A+ VF GM +K + +WNA++ GLAM+G  E +L +FS MK     P++
Sbjct: 550 IDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNE 609

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TF+GVL AC H G +D+G  +FYSM  D+ I P V+HYGCM+DLLGR+G+L+EA  L+ 
Sbjct: 610 ITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLN 669

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
            MP+ P+   WG LLGAC+KH   E+   V   LI L+    G + +LSNI+A+ G W+ 
Sbjct: 670 RMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDD 729

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V  +R  M K R  K  G S +E +  +HEF   D+ HP  + I  M+  +   LK  G+
Sbjct: 730 VLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGY 789

Query: 593 AAKLS 597
              ++
Sbjct: 790 TPDIN 794



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/431 (25%), Positives = 211/431 (48%), Gaps = 66/431 (15%)

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           RA +Q +    AF ++  M    +  DN+TYP L++AC+ +      + +H  + K G+ 
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D++V N+LI+ +S C    ++ A ++F      D VSWNS++AG ++ G + EA+ ++ 
Sbjct: 246 SDVYVRNTLINCFSVCS--NMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYH 303

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           +MPER  ++ N+++  +   G +  A +LF+++  +++V+WS +                
Sbjct: 304 QMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSAL---------------- 347

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
                          I+ + +  M +EA R +  M + G+  D+   +S L+ACA   ++
Sbjct: 348 ---------------IACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVV 392

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL------------------------- 362
            +G  +H+   K   +   N+ NAL+ MY+KCG +                         
Sbjct: 393 NMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGY 452

Query: 363 ------DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
                 DNA ++F+ M +KD+VSW++M+ G A +   ++ L LF  M+  GF PD+ T V
Sbjct: 453 LKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLV 512

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            V+ AC     +++G ++ ++  +  G+   V     +ID+  + G ++ AL +   M +
Sbjct: 513 SVISACARLAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-I 570

Query: 477 EPNAIIWGTLL 487
           E     W  L+
Sbjct: 571 EKGISTWNALI 581



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 147/327 (44%), Gaps = 19/327 (5%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC ++   ++LF +   LDL         +IS    C  +  A  +F+ + + DV  +++
Sbjct: 423 KCGDIMVARKLFDEAYLLDLIS----WNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 478

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    QN L  +   +F +MQ  G   D  T   ++ AC         + +HA I + G
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNG 538

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              ++ +  +LID Y KCG V  +L  ++F  M E+ I +WN++I GL   G +  +  +
Sbjct: 539 LTINVILGTTLIDMYMKCGCVETAL--EVFYGMIEKGISTWNALILGLAMNGLVESSLDM 596

Query: 206 FDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYS 256
           F  M +     + +++  +L      G ++     F  + H      N+  +  MV    
Sbjct: 597 FSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLG 656

Query: 257 KDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTL 314
           + G ++ A+ L +RMP    +  W  ++    + G ++   R+  ++ E  L+PD DG  
Sbjct: 657 RAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIE--LQPDHDGFH 714

Query: 315 ISILAACAESGLLGLGMKVHASINKYR 341
           + +    A  G     +++   + K+R
Sbjct: 715 VLLSNIYASKGKWDDVLEIRGMMTKHR 741


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 196/577 (33%), Positives = 320/577 (55%), Gaps = 19/577 (3%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L   KQ+    +K  L  D  +A  L++  +       A +VFND++  D+  +N++I 
Sbjct: 919  DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMIS 978

Query: 89   ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK-NWFHLVQMIHALIYKCGYF 147
            +C Q+SL  ++  +F+D+  +G+  D+FT   +L+AC+   +  ++ + IH    K G  
Sbjct: 979  SCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNI 1038

Query: 148  GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             D FV  +LID YSK G   +  A+ LF +  + D+  WN+M+ G + G +  +A  LF 
Sbjct: 1039 ADSFVATTLIDVYSKSG--KMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFS 1096

Query: 208  EMPERDAVSWNTILDGYAKA---------GEMNLAFEL---FEKIPHRNIVSWSTMVWGY 255
             + +    S    L   AKA         G+   A  +   F+   H N    S ++  Y
Sbjct: 1097 LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVN----SGILDMY 1152

Query: 256  SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
             K GDM  A ++F+ + A   V WT +ISG  + G   +A R+Y +M ++ + PD+ T  
Sbjct: 1153 IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 1212

Query: 316  SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
            +++ A +    L  G ++HA++ K     +  V  +LVDMYAKCG++++A  +F  M  +
Sbjct: 1213 TLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR 1272

Query: 376  DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
            ++  WNAML GLA HG  E+A+ LF  MK  G  PD+ +F+G+L AC+HAG   +  +Y 
Sbjct: 1273 NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYL 1332

Query: 436  YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            +SM  DYGI P++EHY C++D LGR+G ++EA +++++MP + +A I   LLGACR    
Sbjct: 1333 HSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGD 1392

Query: 496  VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            VE  + V   L  L+  D   Y +LSNI+AA   W+ V + R  MK+   +K  G S ++
Sbjct: 1393 VETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWID 1452

Query: 556  VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            V N +H F V D+ HP+++ IY  +  + K ++  G+
Sbjct: 1453 VKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGY 1489



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 134/476 (28%), Positives = 208/476 (43%), Gaps = 42/476 (8%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            NL   K   A+I+      D +++  L++  + C  +  A +VF+   + D+  +N ++ 
Sbjct: 636  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 695

Query: 89   ACV----QNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            A       N  NAQ    +F  ++     T   T   +LK C         + +H    K
Sbjct: 696  AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 755

Query: 144  CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
             G   D+FV  +L++ YSKCG   +  A+ LF  M ERD+V WN M+ G V+ G   EA 
Sbjct: 756  IGLEWDVFVSGALVNIYSKCGR--MRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAF 813

Query: 204  RLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
            +LF E        D  S   IL+G ++                   V+W    W  +   
Sbjct: 814  QLFSEFHRSGLRPDEFSVQLILNGVSE-------------------VNWDEGKW-LADQV 853

Query: 260  DMEMAKL-LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
                AKL L D  P   +  W   +S     G    A   +  M    +  D  TL+ +L
Sbjct: 854  QAYAAKLSLSDDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVL 911

Query: 319  AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            AA A +  L LG +VH    K     + +V N+LV+MY+K G    A  VFN M   DL+
Sbjct: 912  AAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLI 971

Query: 379  SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID--KGVQYFY 436
            SWN+M+   A     E+++ LF  +  EG  PD +T   VL AC+    ID     +  +
Sbjct: 972  SWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS--SLIDGLNISRQIH 1029

Query: 437  SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP----NAIIWGTLLG 488
                  G +        +ID+  +SG+++EA  L Q+         NA+++G ++G
Sbjct: 1030 VHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIG 1085


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 310/583 (53%), Gaps = 12/583 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L   +Q+   +++   ++D + A  L+   +    + +A  VF  +   DV  +N  I
Sbjct: 219 RDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFI 278

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV +  + +A  + L M+  G+  + FT   +LKAC G   F+L + IH  + K    
Sbjct: 279 SGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVAD 338

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D FV   L+D Y+K G +    A+K+F  M  RD++ WN++I+G    G   E   LF 
Sbjct: 339 FDEFVAVGLVDMYAKHGFL--DDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFH 396

Query: 208 EMPER------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSK 257
            M +       +  +  ++L   A +  +    ++        ++S S ++ G    Y K
Sbjct: 397 RMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWK 456

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A  +F    +  ++  T +++  ++    ++A +L+ QM   GL+PD   L S+
Sbjct: 457 CGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSL 516

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L AC        G +VHA + K +F  +    NALV  YAKCGS+++A   F+G+ ++ +
Sbjct: 517 LNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGI 576

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSW+AM+ GLA HG G++AL LF RM DEG  P+  T   VL AC HAG +D   +YF S
Sbjct: 577 VSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFES 636

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M+  +GI    EHY CMID+LGR+G+L++A+ LV +MP + NA +WG LLGA R H   E
Sbjct: 637 MKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPE 696

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L     + L  L+    G + +L+N +A+ G W+++A VR  MK +  +K    S VE+ 
Sbjct: 697 LGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWVEIK 756

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           ++VH F V D+ HP +  IY  +  LG  +   G+   +  ++
Sbjct: 757 DKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVPNVEVDL 799



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 156/579 (26%), Positives = 253/579 (43%), Gaps = 55/579 (9%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI----QDPDVHLYNTLIRAC 90
           Q+ A  +   L  D ++A  L++       +  A ++F++      + +   +NT+I A 
Sbjct: 121 QVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAY 180

Query: 91  VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150
           V+N  +  A  VF +M   G   + F +  ++ AC G       + +H  + + GY  D+
Sbjct: 181 VKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDV 240

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           F  N+L+D YSK G   + +A  +F  M   D+VSWN+ I+G V  G    A  L  +M 
Sbjct: 241 FTANALVDMYSKLG--DIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMK 298

Query: 211 ERDAV----SWNTILDGYAKAGEMNLAFE----LFEKIPHRNIVSWSTMVWGYSKDGDME 262
               V    + +++L   A AG  NL  +    + + +   +      +V  Y+K G ++
Sbjct: 299 SSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLD 358

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD--DGTLISILAA 320
            A+ +FD MP + L+ W  +ISG +  G   E   L+ +M + GL  D    TL S+L +
Sbjct: 359 DARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKS 418

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            A S  +    +VHA   K     +++V N L+D Y KCG LD A+ VF      D++S 
Sbjct: 419 TASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISS 478

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ------- 433
             M+  L+    GE A+ LF +M  +G  PD +    +L ACT     ++G Q       
Sbjct: 479 TTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIK 538

Query: 434 --------------YFYS-------MERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRL 470
                         Y Y+        +  +  LP+  +  +  MI  L + G  K AL L
Sbjct: 539 RQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDL 598

Query: 471 VQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFA 525
              M    V PN I   ++L AC     V+ A++  + +    G D    +Y  + +I  
Sbjct: 599 FHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILG 658

Query: 526 ATGDWNK----VANVRLQMKKTRAQKPSGASSVEVDNEV 560
             G        V N+  Q          GAS V  D E+
Sbjct: 659 RAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPEL 697



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 143/518 (27%), Positives = 233/518 (44%), Gaps = 84/518 (16%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L++  + CR    A  VF++I DP    +++L+ A   N +   A   F  M+ +GV  +
Sbjct: 43  LLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCN 102

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            F  P +LK C     F     +HAL        D+FV N+L+  Y   G+  V  A+++
Sbjct: 103 EFALPVVLK-CAPDVRFG--AQVHALAVATRLVHDVFVANALVAVYGGFGM--VDEARRM 157

Query: 175 FMSM----GERDIVSWNSMIAGLVKGGELSEARRLFDEMP-------------------- 210
           F       GER+ VSWN+MI+  VK  +  +A  +F EM                     
Sbjct: 158 FDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTG 217

Query: 211 -------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
                              E+D  + N ++D Y+K G++ +A  +FEK+P  ++VSW+  
Sbjct: 218 SRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNA- 276

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
                                          ISG    G    A  L  QM+ +GL P+ 
Sbjct: 277 ------------------------------FISGCVTHGHDHRALELLLQMKSSGLVPNV 306

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL S+L ACA +G   LG ++H  + K     +  V   LVDMYAK G LD+A  VF+ 
Sbjct: 307 FTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDF 366

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--KYTFVGVLCACTHAGFID 429
           M ++DL+ WNA++ G +  G+  + L LF RM+ EG   D  + T   VL +   +  I 
Sbjct: 367 MPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAIC 426

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
              Q  +++    G+L        +ID   + G+L  A+++ +    + + I   T++ A
Sbjct: 427 HTRQ-VHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSD-DIISSTTMMTA 484

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             + +  E A ++   ++R KG +P ++ + S + A T
Sbjct: 485 LSQCDHGEDAIKLFVQMLR-KGLEPDSFVLSSLLNACT 521



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 187/414 (45%), Gaps = 23/414 (5%)

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H+ + K G        N L+  YS+C +   S A+ +F  + +   VSW+S++      
Sbjct: 26  LHSHLLKSGLLAGF--SNHLLTLYSRCRLP--SAARAVFDEIPDPCHVSWSSLVTAYSNN 81

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKA------GEMNLAFELFEKIPHRNIVSWST 250
           G   +A   F  M  R        L    K       G    A  +  ++ H   V+ + 
Sbjct: 82  GMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRFGAQVHALAVATRLVHDVFVA-NA 140

Query: 251 MVWGYSKDGDMEMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           +V  Y   G ++ A+ +FD        +  V W  +IS Y +   + +A  ++ +M  +G
Sbjct: 141 LVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVWSG 200

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            +P++     ++ AC  S  L  G +VH ++ +  ++ +    NALVDMY+K G ++ A 
Sbjct: 201 ERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAA 260

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           +VF  M   D+VSWNA + G   HG   +AL L  +MK  G  P+ +T   VL AC  AG
Sbjct: 261 TVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAGAG 320

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
             + G Q    M +      +    G ++D+  + G L +A ++   MP   + I+W  L
Sbjct: 321 AFNLGRQIHGFMVKAVADFDEFVAVG-LVDMYAKHGFLDDARKVFDFMP-RRDLILWNAL 378

Query: 487 LGACRKHNAVELAEEVLDCLIRLK--GSDPG-NYTMLSNIFAATGDWNKVANVR 537
           +  C  H+      EVL    R++  G D   N T L+++  +T     + + R
Sbjct: 379 ISGC-SHDGRH--GEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTR 429



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    + +  T+Q+ A   K+ L  D ++   LI S   C Q+  AIKVF 
Sbjct: 409 RTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFK 468

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           + +  D+    T++ A  Q      A ++F+ M  KG+  D+F    LL AC   + +  
Sbjct: 469 ESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQ 528

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D+F  N+L+ +Y+KCG   +  A   F  + ER IVSW++MI GL
Sbjct: 529 GKQVHAHLIKRQFTSDVFAGNALVYAYAKCG--SIEDADMAFSGLPERGIVSWSAMIGGL 586

Query: 194 VKGGE-----------------------------------LSEARRLFDEMPE-----RD 213
            + G                                    + +A++ F+ M E     R 
Sbjct: 587 AQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRT 646

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              +  ++D   +AG++  A EL   +P + N   W  ++       D E+ ++    LF
Sbjct: 647 EEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLF 706

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  E A++   M+++ +K +
Sbjct: 707 TLEPEKSGTH-VLLANTYASAGMWDEMAKVRKLMKDSNVKKE 747


>gi|242063912|ref|XP_002453245.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
 gi|241933076|gb|EES06221.1| hypothetical protein SORBIDRAFT_04g002445 [Sorghum bicolor]
          Length = 603

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 163/432 (37%), Positives = 262/432 (60%), Gaps = 6/432 (1%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+   N++I  Y++ G++ V  A++LF  M E+D VSW +++ G ++ G++  A ++F +
Sbjct: 178 DLVSWNAMITGYTRAGMMQV--AQRLFDEMPEKDTVSWTAIVRGYLQNGDVDAAWKVFQD 235

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MP+RD ++WNT++ G+  +  ++ A  LF  +P R++VSW+T++ GY + GDM+ A   F
Sbjct: 236 MPDRDVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWF 295

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
            +MP K    W  +ISGY ++G    A  L  +M + G +PD  T    ++ C+    LG
Sbjct: 296 RKMPEKDEASWNTLISGYKDEG----ALNLLSEMTQGGYRPDQATWSVAISICSSLAALG 351

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
            G  VH    K  F+ +  V ++L+ MY+KCG +  A  VF+ + ++D V+WNAM+   A
Sbjct: 352 CGRMVHVCTIKTGFERDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYA 411

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG   +AL LF RM  +GF PD  TF+ VL AC H G++ +G  +F SM++D+ ++P+ 
Sbjct: 412 YHGLAAEALTLFDRMTKDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRS 471

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           +HY CM+DLLGRSG + +A    + +P +     W TL  +C  H  ++L E V   +++
Sbjct: 472 DHYSCMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQ 531

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
            + SD G YT+LSNI+AA G W+  A+VR  MK+   +K +G S +E+  +V  FS  D+
Sbjct: 532 SRPSDGGMYTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDK 591

Query: 569 LHPKSEQIYQMI 580
            HP  EQI Q +
Sbjct: 592 AHPLIEQICQEV 603



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/330 (33%), Positives = 171/330 (51%), Gaps = 53/330 (16%)

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN 218
           ++ + G VG   A+++F  M ER++ +WN MI+GLV+ G L++AR +FD MP R++VSW 
Sbjct: 2   AHFRAGRVGA--ARRVFDEMSERNVFTWNCMISGLVRNGMLTDARGVFDTMPFRNSVSWA 59

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            +L GYA+ G +  A ELF+++P R++VSW+ M+ GY  +G ++ A+ LFD MPA+  V 
Sbjct: 60  ALLTGYARCGRVAEARELFDRMPDRSVVSWNAMISGYLWNGMVDRARDLFDVMPARNDVS 119

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W ++ISGY ++   +EA  ++D+                                     
Sbjct: 120 WLMMISGYMKRKRVREAREIFDRAPSP--------------------------------- 146

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
                  T+VCNAL+  YA+ G L +A  +F  M   DLVSWNAM+ G    G  + A  
Sbjct: 147 ------TTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQR 200

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDL 457
           LF  M ++    D  ++  ++      G +D   + F  M +RD      V  +  M+  
Sbjct: 201 LFDEMPEK----DTVSWTAIVRGYLQNGDVDAAWKVFQDMPDRD------VLAWNTMMSG 250

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
              S RL +ALRL   MP + + + W T+L
Sbjct: 251 FVVSERLDDALRLFADMP-DRDLVSWNTIL 279



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 133/502 (26%), Positives = 220/502 (43%), Gaps = 105/502 (20%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           ++G A +VF+++ + +V  +N +I   V+N +   A         +GVF    T PF   
Sbjct: 8   RVGAARRVFDEMSERNVFTWNCMISGLVRNGMLTDA---------RGVFD---TMPFR-- 53

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             N  +W                        +L+  Y++CG   V+ A++LF  M +R +
Sbjct: 54  --NSVSW-----------------------AALLTGYARCG--RVAEARELFDRMPDRSV 86

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW-------------------------- 217
           VSWN+MI+G +  G +  AR LFD MP R+ VSW                          
Sbjct: 87  VSWNAMISGYLWNGMVDRARDLFDVMPARNDVSWLMMISGYMKRKRVREAREIFDRAPSP 146

Query: 218 -----NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
                N +L GYA+ G +  A +LF ++   ++VSW+ M+ GY++ G M++A+ LFD MP
Sbjct: 147 TTSVCNALLSGYAEHGYLKDAEDLFGRMQTPDLVSWNAMITGYTRAGMMQVAQRLFDEMP 206

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI--SILAACAESGLLGLG 330
            K  V WT I+ GY + G    A +++  M      PD   L   ++++    S  L   
Sbjct: 207 EKDTVSWTAIVRGYLQNGDVDAAWKVFQDM------PDRDVLAWNTMMSGFVVSERLDDA 260

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
           +++ A +            N ++  Y + G +D A + F  M +KD  SWN ++ G    
Sbjct: 261 LRLFADMPDRDLVS----WNTILQGYVQQGDMDGATAWFRKMPEKDEASWNTLISGY--- 313

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY-----SMERDYGIL 445
            + E AL L S M   G+ PD+ T+   +  C+    +  G            ERD  ++
Sbjct: 314 -KDEGALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHVCTIKTGFERDALVM 372

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
                   +I +  + G + EA + V  + V+ + + W  ++     H    LA E L  
Sbjct: 373 SS------LISMYSKCGLITEASQ-VFDLIVQRDTVTWNAMIATYAYHG---LAAEALTL 422

Query: 506 LIRLK--GSDPGNYTMLSNIFA 525
             R+   G  P + T LS + A
Sbjct: 423 FDRMTKDGFSPDHATFLSVLSA 444



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 143/339 (42%), Gaps = 77/339 (22%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ-------------- 92
           RD      ++S   +  ++  A+++F D+ D D+  +NT+++  VQ              
Sbjct: 239 RDVLAWNTMMSGFVVSERLDDALRLFADMPDRDLVSWNTILQGYVQQGDMDGATAWFRKM 298

Query: 93  --------NSL-----NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
                   N+L     +  A  +  +M + G   D  T+   +  C+        +M+H 
Sbjct: 299 PEKDEASWNTLISGYKDEGALNLLSEMTQGGYRPDQATWSVAISICSSLAALGCGRMVHV 358

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
              K G+  D  V +SLI  YSKCG+  ++ A ++F  + +RD V+WN+MIA     G  
Sbjct: 359 CTIKTGFERDALVMSSLISMYSKCGL--ITEASQVFDLIVQRDTVTWNAMIATYAYHGLA 416

Query: 200 SEARRLFDEMPERDAVS--------------------------------WNTI------- 220
           +EA  LFD M  +D  S                                WN I       
Sbjct: 417 AEALTLFDRMT-KDGFSPDHATFLSVLSACAHKGYLYEGCHHFRSMQQDWNLIPRSDHYS 475

Query: 221 --LDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEM----AKLLFDRMPA 273
             +D   ++G ++ A+    +IP    I +W T+    +  GD+++    AK +    P+
Sbjct: 476 CMVDLLGRSGFVHQAYNFTRRIPSDLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPS 535

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
              + +T++ + YA KGM   AA +   M+E GLK + G
Sbjct: 536 DGGM-YTLLSNIYAAKGMWSSAASVRGLMKEQGLKKETG 573


>gi|255548718|ref|XP_002515415.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545359|gb|EEF46864.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 507

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 176/494 (35%), Positives = 271/494 (54%), Gaps = 11/494 (2%)

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA----CNGKNW 130
           +   +V  +N +IR  +     AQA   +L +QE G   DN+T+P LLKA    C  K  
Sbjct: 10  LPSSEVKKWNEIIRKQMHMGNGAQAILTYLKVQELGFHADNYTFPILLKAAGRICASKIG 69

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           F L    H    K G+    FV  +L++ Y     +G +   K+F  M  +D+++WNSM+
Sbjct: 70  FAL----HGQTIKTGFCAHAFVQTALVNMYGNLHCIGDAF--KVFEIMPVKDLIAWNSML 123

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                  ++  A  LF+ MP +D  S+N ++ GY+  GE  LA  +F+ +  R+ VSW++
Sbjct: 124 DAYASNAQMDYASNLFNSMPLKDISSFNIMISGYSTRGEAMLARSIFDSMEVRDFVSWNS 183

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M+  Y + GDME    LF  MP K  V W  +I+G  +         L+++M+ A   PD
Sbjct: 184 MISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEMKTANYIPD 243

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T+ S+L+ C   G LG G+K+H          + +V  AL+DMY+KCGS++  + VF 
Sbjct: 244 YLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSIEQGLHVFC 303

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
               KD+  WNA++  LA+HG G  AL +F +M+     PD  TF+G++ AC+H+G + +
Sbjct: 304 KSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIGIINACSHSGLVQE 363

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G Q F SM+ D+GI P++EHYGCM++LLGRSG L  AL+++++MP EP   I G LL AC
Sbjct: 364 GCQLFVSMQEDFGISPKLEHYGCMVNLLGRSGHLALALQVIETMPFEPGESILGALLSAC 423

Query: 491 RKHNAVELAEEVLDCLI-RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
             +  +E  E V++ +  +      G   M SN++A+ G+W +    R  M  T   K +
Sbjct: 424 IIYQDLETGERVIELVCSKAHYLSDGELMMFSNLYASCGNWEEANRWREMMNSTGIVKTA 483

Query: 550 GASSVEVDNEVHEF 563
           G S +EV     +F
Sbjct: 484 GYSVIEVSGRFQKF 497



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 96/235 (40%), Gaps = 11/235 (4%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      +IS+      M   + +F ++   +   +NT+I  C+Q+        +F +M
Sbjct: 176 RDFVSWNSMISAYIRAGDMEKGLALFREMPVKNTVTWNTMITGCLQSEHFGMVLDLFEEM 235

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           +      D  T   +L  C           IH      G      V  +LID YSKCG +
Sbjct: 236 KTANYIPDYLTVTSVLSTCGHLGSLGTGIKIHIYAIDNGLVSSPHVTTALIDMYSKCGSI 295

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
              L   +F     +DI  WN++I+ L   G    A ++F +M +     D +++  I++
Sbjct: 296 EQGL--HVFCKSQVKDIYCWNALISALALHGHGYAALKVFGKMRKNHIQPDDITFIGIIN 353

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYSKDGDMEMAKLLFDRMP 272
             + +G +    +LF  +     +S     +  MV    + G + +A  + + MP
Sbjct: 354 ACSHSGLVQEGCQLFVSMQEDFGISPKLEHYGCMVNLLGRSGHLALALQVIETMP 408



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 39/82 (47%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L   P++   LI   + C  +   + VF   Q  D++ +N LI A   +     A +VF 
Sbjct: 275 LVSSPHVTTALIDMYSKCGSIEQGLHVFCKSQVKDIYCWNALISALALHGHGYAALKVFG 334

Query: 105 DMQEKGVFTDNFTYPFLLKACN 126
            M++  +  D+ T+  ++ AC+
Sbjct: 335 KMRKNHIQPDDITFIGIINACS 356


>gi|125528817|gb|EAY76931.1| hypothetical protein OsI_04889 [Oryza sativa Indica Group]
          Length = 565

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 172/443 (38%), Positives = 263/443 (59%), Gaps = 3/443 (0%)

Query: 111 VFTDNFTYPFLLKACNGKNWFHL-VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           V  D+F+ PF L A        L   +    +      G + V N+L+D Y+KC    + 
Sbjct: 77  VSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPGRLPVANALVDLYAKCD--DLP 134

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
            A      +   D VS+NS++    +   + +A  LF  MP R  VSWN ++  Y  AG+
Sbjct: 135 AAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFAAMPSRTQVSWNAMVVVYVNAGD 194

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           ++ A  +F+++P R+  SWS ++ GY K G M  A+ +FDRMPAK LV WT +I+GYA+ 
Sbjct: 195 VSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQS 254

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+ KE+  L+ +ME AG++PD  T++ +++A ++ G   L   V + ++K R + N  V 
Sbjct: 255 GVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVL 314

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            ALVDM+AKCG++D A+S F  + + D   + A++ GLA HG  + AL +F RM+ +   
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           PD  TFVGVL AC+HAG +DKG+ Y+ +M + YG+  + +HY C++D+LGR+GRL+EA  
Sbjct: 375 PDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFE 434

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           +VQ+MP+ P+    G LL AC+ H  VE+AE V + L  L+  + GNY MLSNI+A    
Sbjct: 435 MVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQ 494

Query: 530 WNKVANVRLQMKKTRAQKPSGAS 552
           W +   +R  M+     K  G+S
Sbjct: 495 WEEAERIRSVMRTRVPFKQPGSS 517



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           + K  ++R+  +   L+   A C  +  A+  F +I  PD + Y  LI     +     A
Sbjct: 302 VDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLA 361

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACN 126
            +VF  MQ + V+ D  T+  +L AC+
Sbjct: 362 LQVFERMQAQSVWPDPITFVGVLTACS 388


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 193/580 (33%), Positives = 314/580 (54%), Gaps = 23/580 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +++N+  Q+   ++K+       +   L+ S    R +GLA  +F  + + D   +N L+
Sbjct: 153 ESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALL 212

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               +   N  A  +F  MQ+ G     FT+  +L A    +     Q +H+ + KC + 
Sbjct: 213 TGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFV 272

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            ++FV N+L+D YSK     +  A+KLF  M E D +S+N +I      G + E+  LF 
Sbjct: 273 WNVFVANALLDFYSKHD--RIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFR 330

Query: 208 EMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGY 255
           E+     +R    + T+L     A  +NL  E+  +I  + IV+         +++V  Y
Sbjct: 331 ELQFTRFDRRQFPFATLLS--IAANSLNL--EMGRQIHSQAIVTDAISEVLVGNSLVDMY 386

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K      A  +F  +  ++ VPWT +ISGY +KG+ ++  +L+ +M  A +  D  T  
Sbjct: 387 AKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYA 446

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCN--ALVDMYAKCGSLDNAMSVFNGMT 373
           SIL ACA    L LG ++H+ I   R  C +NV +  ALVDMYAKCGS+  A+ +F  M 
Sbjct: 447 SILRACANLASLTLGKQLHSRI--IRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP 504

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            ++ VSWNA++   A +G G  AL  F +M   G  P+  +F+ +LCAC+H G +++G+Q
Sbjct: 505 VRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQ 564

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF SM + Y + P+ EHY  M+D+L RSGR  EA +L+  MP EP+ I+W ++L +CR H
Sbjct: 565 YFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIH 624

Query: 494 NAVELAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
              ELA +  D L  +KG  D   Y  +SNI+AA G+W+ V  V+  +++   +K    S
Sbjct: 625 KNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYS 684

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            VE+  + H FS  D  HP++++I + ++ L K ++  G+
Sbjct: 685 WVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGY 724



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 162/315 (51%), Gaps = 10/315 (3%)

Query: 197 GELSEARRLFDEMP--------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
           G L+  +R F  +         + +   +N  +  + + G++  A +LF+++PH+N++S 
Sbjct: 17  GTLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVIST 76

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           +TM+ GY K G++  A+ LFD M  +++V WT++I GYA+     EA  L+  M   G+ 
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           PD  TL ++L+   E   +    +VH  + K  +     VCN+L+D Y K  SL  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F  M +KD V++NA+L G +  G    A+ LF +M+D GF P ++TF  VL A      I
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDI 256

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           + G Q  +S       +  V     ++D   +  R+ EA +L   MP E + I +  L+ 
Sbjct: 257 EFG-QQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMP-EVDGISYNVLIT 314

Query: 489 ACRKHNAVELAEEVL 503
            C  +  VE + E+ 
Sbjct: 315 CCAWNGRVEESLELF 329



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/434 (27%), Positives = 195/434 (44%), Gaps = 14/434 (3%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  A  +F+ +    V  +  LI    Q++   +AF +F DM   G+  D+ T   LL  
Sbjct: 89  LSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSG 148

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
                  + V  +H  + K GY   + V NSL+DSY K   +G  LA  LF  M E+D V
Sbjct: 149 FTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLG--LACHLFKHMAEKDNV 206

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           ++N+++ G  K G   +A  LF +M +        ++  +L    +  ++    ++   +
Sbjct: 207 TFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFV 266

Query: 241 PHRNIVSWSTMVWG-----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
              N V W+  V       YSK   +  A+ LF  MP    + + ++I+  A  G  +E+
Sbjct: 267 VKCNFV-WNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEES 325

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
             L+ +++            ++L+  A S  L +G ++H+            V N+LVDM
Sbjct: 326 LELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDM 385

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKC     A  +F  +  +  V W A++ G    G  E  L LF  M     G D  T+
Sbjct: 386 YAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATY 445

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
             +L AC +   +  G Q    + R  G L  V     ++D+  + G +KEAL++ Q MP
Sbjct: 446 ASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP 504

Query: 476 VEPNAIIWGTLLGA 489
           V  N++ W  L+ A
Sbjct: 505 VR-NSVSWNALISA 517



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 138/374 (36%), Gaps = 94/374 (25%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL   +Q+ +Q I  D   +  +   L+   A C + G A ++F D+       +  LI 
Sbjct: 356 NLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALIS 415

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY------ 142
             VQ  L+    ++F++M    +  D+ TY  +L+AC       L + +H+ I       
Sbjct: 416 GYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLS 475

Query: 143 -------------KCG-------YFGDIFVPNS-----LIDSY----------------- 160
                        KCG        F ++ V NS     LI +Y                 
Sbjct: 476 NVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMI 535

Query: 161 ------------------SKCGVVGVSLAKKLFMSMG-----ERDIVSWNSMIAGLVKGG 197
                             S CG+V   L  + F SM      E     + SM+  L + G
Sbjct: 536 HSGLQPNSVSFLSILCACSHCGLVEEGL--QYFNSMTQVYKLEPRREHYASMVDMLCRSG 593

Query: 198 ELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAF----ELFEKIPHRNIVSWSTMV 252
              EA +L   MP E D + W++IL+         LA     +LF     R+   + +M 
Sbjct: 594 RFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMS 653

Query: 253 WGYSKDGDME----MAKLLFDR----MPA--------KTLVPWTIIISGYAEKGMAKEAA 296
             Y+  G+ +    + K L +R    +PA        KT V      S    K + ++  
Sbjct: 654 NIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLD 713

Query: 297 RLYDQMEEAGLKPD 310
            L  QMEE G KPD
Sbjct: 714 ELEKQMEEQGYKPD 727


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 183/533 (34%), Positives = 289/533 (54%), Gaps = 46/533 (8%)

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           Q P+  L NT++RA      + +A  +++ MQ  GV  +NFTYPF+LK C  +      +
Sbjct: 93  QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGE 152

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           ++H  + + G+  D+FV  +L+D Y+KCG                               
Sbjct: 153 VVHGQVVRTGFGSDLFVEAALVDMYAKCG------------------------------- 181

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------VSW 248
             E+ +A  +FD M  RD V W  ++  Y +A     A  LF K+            +S 
Sbjct: 182 --EIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISV 239

Query: 249 STMVWGYSKDGDMEM--AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           ++ V G   DG M +  A+L+FDRM  +  + W  ++SGY + G   +A  L++QM+ + 
Sbjct: 240 ASAV-GQLGDGRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASE 298

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
             P+  T + +++AC+  G   LG K+H  +   +   +T + NA++DMY KCG LD A+
Sbjct: 299 CDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAV 358

Query: 367 SVFNG--MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
            +FN   + ++D+ SWN ++ G  +HG G++AL LFSRM+ EG  P+  TF  +L AC+H
Sbjct: 359 EMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSH 418

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AG ID+G + F  M +   + P+++HY CM+D+LGR+G L EA RL++ +P  P+  +WG
Sbjct: 419 AGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWG 477

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL ACR H   EL E   + L +L+    G Y ++SNI+AA+  W +V  VR  MK   
Sbjct: 478 ALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRG 537

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            +KP+  S +E   EVH F   DQ  P   ++Y+ + +L  ++K VG+   LS
Sbjct: 538 LKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLS 590



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 165/369 (44%), Gaps = 46/369 (12%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
            Q+++     D ++   L+   A C ++G A +VF+ +   DV  +  +I    Q     
Sbjct: 156 GQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPL 215

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           +A  +F  MQE+G   D  T   +  A                    G  GD        
Sbjct: 216 KALMLFRKMQEEGFLGDEITAISVASA-------------------VGQLGD-------- 248

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERD 213
                 G + +S A+ +F  M ER+ +SWNSM++G  + G  ++A  LF++M     + +
Sbjct: 249 ------GRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPN 302

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAKLLFD 269
            V+   ++   +  G  +L  +L   +    +   +T+       Y K GD++ A  +F+
Sbjct: 303 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFN 362

Query: 270 --RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
              +  + +  W ++ISGY   G  KEA  L+ +M+  G++P+D T  SIL+AC+ +GL+
Sbjct: 363 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 422

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--DLVSWNAMLY 385
             G K  A + K   +        +VDM  + G L+ A  +   +  +  D V W A+L 
Sbjct: 423 DEGRKCFADMTKLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEV-WGALLL 481

Query: 386 GLAMHGQGE 394
              +HG  E
Sbjct: 482 ACRIHGNTE 490



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/274 (30%), Positives = 128/274 (46%), Gaps = 26/274 (9%)

Query: 255 YSKDGDMEMAKLLFD----RMPAKTLVPWTII----ISGYAEKGMAKEAARLYDQMEEAG 306
           YSK GD+  A+ LFD         T  P + +    +  YA  G + EA  LY  M+  G
Sbjct: 68  YSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMG 127

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           +  ++ T   +L  CA       G  VH  + +  F  +  V  ALVDMYAKCG + +A 
Sbjct: 128 VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAH 187

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLCACT 423
            VF+ M  +D+V W AM   + ++ Q E   KAL LF +M++EGF  D+ T + V  A  
Sbjct: 188 EVFDRMLIRDVVCWTAM---ITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVG 244

Query: 424 HAG----FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL---VQSMPV 476
             G     I +    F  ME   GI      +  M+    ++GR  +AL L   +Q+   
Sbjct: 245 QLGDGRMAISRARLVFDRMEERNGI-----SWNSMLSGYTQNGRPTDALSLFNQMQASEC 299

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           +PN +    ++ AC    +  L  ++ + +I  K
Sbjct: 300 DPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 333


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 308/568 (54%), Gaps = 11/568 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + A + K   + D  I+   ++     + +    + F  +   ++   N L+      
Sbjct: 110 ESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDT 169

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               Q  R+ + +  +G   + +T+  +LK C  K   +  + IH  + K G   D  + 
Sbjct: 170 ETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLW 229

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           NSL++ Y+KCG    + A K+F  + ERD+VSW ++I G V  G      R+F++M    
Sbjct: 230 NSLVNVYAKCG--SANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEG 286

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAK 265
              +  ++ +IL   +   +++L  ++  +I       N    + +V  Y+K+  +E A+
Sbjct: 287 FNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAE 346

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F+R+  + L  WT+I++GYA+ G  ++A + + QM+  G+KP++ TL S L+ C+   
Sbjct: 347 TIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 406

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H+   K     +  V +ALVDMYAKCG +++A  VF+G+  +D VSWN ++ 
Sbjct: 407 TLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIIC 466

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G + HGQG KAL  F  M DEG  PD+ TF+GVL AC+H G I++G ++F S+ + YGI 
Sbjct: 467 GYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGIT 526

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P +EHY CM+D+LGR+G+  E    ++ M +  N +IW T+LGAC+ H  +E  E     
Sbjct: 527 PTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMK 586

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L  L+     NY +LSN+FAA G W+ V NVR  M     +K  G S VEV+ +VH F  
Sbjct: 587 LFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLS 646

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            D  HPK  +I+  +  L + L  VG+ 
Sbjct: 647 HDGSHPKIREIHLKLQDLHQKLMSVGYT 674



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/537 (24%), Positives = 242/537 (45%), Gaps = 84/537 (15%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++  ++IK  +  D ++   L++    C  +  A +V  ++   DV  +N  + +    
Sbjct: 9   KKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSP 68

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A ++F  M+   +  + F +  L+ A       H  + IHA + K G+  DI + 
Sbjct: 69  YPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILIS 128

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG-----------------LVKG 196
           N+ +  Y K     V    + F +M   ++ S N++++G                 LV+G
Sbjct: 129 NAFVTMYMK--TQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEG 186

Query: 197 ------------------GELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAF 234
                             G+L+E + +  ++ +     D+  WN++++ YAK G  N A 
Sbjct: 187 FEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYAC 246

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           ++F +IP R++VSW+ ++ G+                          +  GY        
Sbjct: 247 KVFGEIPERDVVSWTALITGF--------------------------VAEGYG------S 274

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
             R+++QM   G  P+  T ISIL +C+    + LG +VHA I K     N  V  ALVD
Sbjct: 275 GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVD 334

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAK   L++A ++FN + K+DL +W  ++ G A  GQGEKA+  F +M+ EG  P+++T
Sbjct: 335 MYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFT 394

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
               L  C+    +D G Q  +SM    G    +     ++D+  + G +++A  +V   
Sbjct: 395 LASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAKCGCVEDA-EVVFDG 452

Query: 475 PVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            V  + + W T++    +H     A++  E +LD     +G+ P   T +  + A +
Sbjct: 453 LVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLD-----EGTVPDEVTFIGVLSACS 504



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/382 (26%), Positives = 186/382 (48%), Gaps = 18/382 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +LN+ K +  Q+IK  +  D ++   L++  A C     A KVF +I + DV  +  LI 
Sbjct: 206 DLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALIT 265

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V     +   R+F  M  +G   + +T+  +L++C+  +   L + +HA I K    G
Sbjct: 266 GFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDG 324

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + FV  +L+D Y+K     +  A+ +F  + +RD+ +W  ++AG  + G+  +A + F +
Sbjct: 325 NDFVGTALVDMYAKNRF--LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQ 382

Query: 209 MPERDAVSWNTI-----LDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDG 259
           M +R+ V  N       L G ++   ++   +L     +     ++   S +V  Y+K G
Sbjct: 383 M-QREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCG 441

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +E A+++FD + ++  V W  II GY++ G   +A + ++ M + G  PD+ T I +L+
Sbjct: 442 CVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLS 501

Query: 320 ACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           AC+  GL+  G K   S++K Y           +VD+  + G      S    M    ++
Sbjct: 502 ACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNV 561

Query: 378 VSWNAMLYGLAMHGQ---GEKA 396
           + W  +L    MHG    GE+A
Sbjct: 562 LIWETVLGACKMHGNIEFGERA 583



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 145/337 (43%), Gaps = 51/337 (15%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C +L+     KQ+ AQI+K  L  + ++   L+   A  R +  A  +FN +   D+
Sbjct: 298 LRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDL 357

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  ++    Q+    +A + F+ MQ +GV  + FT    L  C+        + +H++
Sbjct: 358 FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSM 417

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K G  GD+FV ++L+D Y+KCG   V  A+ +F  +  RD VSWN++I G  + G+  
Sbjct: 418 AIKAGQSGDMFVASALVDMYAKCGC--VEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGG 475

Query: 201 EARRLFDEMPERDAV----------------------------------------SWNTI 220
           +A + F+ M +   V                                         +  +
Sbjct: 476 KALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACM 535

Query: 221 LDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEM----AKLLFDRMPAKT 275
           +D   +AG+ +      E++    N++ W T++      G++E     A  LF+  P + 
Sbjct: 536 VDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEP-EI 594

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
              + ++ + +A KGM  +   +   M   G+K + G
Sbjct: 595 DSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPG 631



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L   L    +   L+  +QL +  IK     D ++A  L+   A C  +  A  VF+ + 
Sbjct: 395 LASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV 454

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKN 129
             D   +NT+I    Q+    +A + F  M ++G   D  T+  +L AC+       GK 
Sbjct: 455 SRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKK 514

Query: 130 WFHLVQMIHAL 140
            F+ +  I+ +
Sbjct: 515 HFNSLSKIYGI 525


>gi|359491803|ref|XP_002269228.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 550

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 195/539 (36%), Positives = 301/539 (55%), Gaps = 44/539 (8%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLAL---CRQMGLAIKVFN 73
           L + L  L    +L+Q     A +I   L   P+   +L++  AL      +  A  +F 
Sbjct: 14  LSQALTALTATSHLHQAH---AHLIVSGLASHPFTVTRLLACAALSPSASDLPHAKTIFL 70

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
              +P   ++NT+I A    +L++  F  ++ M   G F DNFT+PFL+K+ +      L
Sbjct: 71  HTHNPSPFMFNTIIMAS-SRTLDSVTF--YVCMLHAGHFPDNFTFPFLIKSSSASPTSLL 127

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAG 192
              +HA + K G   D+FV N++I  YS      +  A+K+F  S    D+VSW ++I G
Sbjct: 128 GHQLHAHVVKFGLDRDVFVVNNMIALYSS--FRELRSARKVFDESYSLVDVVSWTTLITG 185

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
               G++ EAR++FD MP ++ VSWN ++ GYA +  +N A +LF+++P R+  SWS MV
Sbjct: 186 FSNSGQIDEARKIFDLMPLKNTVSWNAMISGYAGSSRINEARKLFDEMPDRDAASWSAMV 245

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDD 311
                                          SGY++ GM  EA  L+ +M     + P++
Sbjct: 246 -------------------------------SGYSQLGMCNEALDLFMEMVTGDKMIPNE 274

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
             L+S ++ACA+   L  G  +H+ I + + + N  +   L+DMY KCGS+ +A  VFN 
Sbjct: 275 AALVSAVSACAQLRALEEGRWLHSYIKEKKLRINVTLGTVLLDMYGKCGSILDAAGVFNL 334

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M+++++ SWN+M+ GLA++G G++AL LF +M+  G  P+  TF+ +L  C+H+G I +G
Sbjct: 335 MSERNVNSWNSMIAGLALNGCGKEALALFWKMQFVGPSPNAITFIALLTGCSHSGLITEG 394

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
              F  M + YGI PQ++HYGCM+DLLGR+G +KEAL  V+ MP++P++ +WG L+GACR
Sbjct: 395 RWLFSMMTQVYGIKPQLKHYGCMVDLLGRAGLVKEALDFVEKMPMKPHSELWGALVGACR 454

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
            H  VEL EE+   LI L+    G Y +L NIFAA   W+ VA VR   K  +  K  G
Sbjct: 455 IHGQVELGEELGKRLIDLEPHHGGRYALLCNIFAAAQRWDDVAMVRDLEKGRKVLKNPG 513


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/450 (38%), Positives = 259/450 (57%), Gaps = 4/450 (0%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D    N+L+  +  CG   +  A+++F +M  +D+ SWN+M++GL K G   EA  +F  
Sbjct: 76  DTVSYNTLLSCHFACG--DIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRI 133

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLL 267
           MP R+AVSWN ++   A +G+M  A +LF   P + + + W+ MV GY   G+++ A   
Sbjct: 134 MPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEF 193

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGL 326
           F  MP + LV W  +++GY +   A +A R++  M E++ ++P+  TL S+L  C+    
Sbjct: 194 FGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSA 253

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           LG G +VH    K     N  V  +L+ MY KCG L++A  VF+ M+ KD+V+WNAM+ G
Sbjct: 254 LGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISG 313

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
            A HG G +A+ LF +MKDEG  PD  T + VL AC H G  D G+Q F +M+  Y I P
Sbjct: 314 YAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEP 373

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           Q++HY CM+DLL R+G L+ A+ ++ SMP EP+   +GTLL ACR +  +E AE     L
Sbjct: 374 QIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKL 433

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           I     + G Y  L+NI+A    W  V+ VR  MK     K  G S +E+    HEF   
Sbjct: 434 IEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSN 493

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           D+LHP+   I+  ++ L   +K +G+   L
Sbjct: 494 DRLHPQLGLIHDKLDRLQMLMKAMGYVPDL 523



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 163/328 (49%), Gaps = 19/328 (5%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L+S    C  +  A +VF+ +   DV  +NT++    +N  + +A  +F  M  +   + 
Sbjct: 83  LLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRNAVSW 142

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           N     L  AC+G      +     L        D  +  +++  Y   G   V  A + 
Sbjct: 143 NAMVAAL--ACSGD-----MGAAEDLFRNAPEKTDAILWTAMVSGYMDTG--NVQKAMEF 193

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN-----TILDGYAKAGE 229
           F +M  R++VSWN+++AG VK     +A R+F  M E   V  N     ++L G +    
Sbjct: 194 FGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSA 253

Query: 230 MNLAFELFE---KIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           +    ++ +   K+P  RN+   ++++  Y K GD+  A  +FD M  K +V W  +ISG
Sbjct: 254 LGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISG 313

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKC 344
           YA+ G   +A +L+++M++ G+ PD  TL+++L AC  +GL   G++   ++ + Y+ + 
Sbjct: 314 YAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEP 373

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGM 372
             +  + +VD+  + G L+ A+++ + M
Sbjct: 374 QIDHYSCMVDLLCRAGLLERAVNMIHSM 401



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 171/348 (49%), Gaps = 30/348 (8%)

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA-GEMNL--AFELFEKIPHRNIV 246
           +A  V+ G+L+ A   F     +   ++N +L GYAKA G + L  A  LF+ IPH + V
Sbjct: 19  VAAAVRRGDLAGAEEAFASTQLKTTTTYNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           S++T++  +   GD++ A+ +F  MP K +  W  ++SG ++ G ++EAA ++  M    
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVR- 137

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
              +  +  +++AA A SG +G    +  +  +   K +  +  A+V  Y   G++  AM
Sbjct: 138 ---NAVSWNAMVAALACSGDMGAAEDLFRNAPE---KTDAILWTAMVSGYMDTGNVQKAM 191

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHA 425
             F  M  ++LVSWNA++ G   + + + AL +F  M +D    P+  T   VL  C++ 
Sbjct: 192 EFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNL 251

Query: 426 GFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLG---RSGRLKEALRLVQSMPVEPNAI 481
             +  G Q + + M+     LP   +      LL    + G L +A ++   M  + + +
Sbjct: 252 SALGFGRQVHQWCMK-----LPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTK-DIV 305

Query: 482 IWGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
            W  ++    +H     A++L E++ D     +G  P   T+L+ + A
Sbjct: 306 AWNAMISGYAQHGGGMQAIKLFEKMKD-----EGVVPDWITLLAVLTA 348



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     +Q+    +KL L R+  +   L+S    C  +  A KVF+++   D+  +
Sbjct: 248 CSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAW 307

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I    Q+    QA ++F  M+++GV  D  T   +L AC
Sbjct: 308 NAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTAC 349


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 198/618 (32%), Positives = 330/618 (53%), Gaps = 72/618 (11%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLNAQAFR 101
            + + ++   L++  + C  +  A  VF++I      DV  +N+++ A V+ S    A  
Sbjct: 180 FESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALE 239

Query: 102 VFLDM----QEKGV--FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
           +F +M     EK     +D  +   +L AC        ++ IH+   + G F D FV N+
Sbjct: 240 LFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNA 299

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--- 212
           LID+Y+KCG   ++ A K+F  M  +D+VSWN+M+ G  + G    A  LF+ M +    
Sbjct: 300 LIDTYAKCG--SMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIP 357

Query: 213 -DAVSWNTILDGY-----------------------------------AKAGEMNLAFEL 236
            D ++W+ ++ GY                                   A  G ++   E+
Sbjct: 358 LDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEI 417

Query: 237 FEKIPHRNIVS----------------WSTMVWGYSKDGDMEMAKLLFDRMP--AKTLVP 278
                 + ++S                ++ ++  YSK    + A+ +FD +P   + +V 
Sbjct: 418 HAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVT 477

Query: 279 WTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           WT++I GYA+ G + +A +++ +M  +   + P+  T+  IL ACA    L +G ++HA 
Sbjct: 478 WTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAY 537

Query: 337 INKYR-FKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
           + ++  ++ +   V N L+DMY+KCG +D A +VF+ M K++ VSW +M+ G  MHG+G+
Sbjct: 538 VTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGK 597

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +AL +F +M+  GF PD  +F+ +L AC+H+G +D+G+ YF  M RDY ++   EHY C+
Sbjct: 598 EALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACV 657

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           IDLL R GRL +A + +Q MP+EP+A+IW  LL ACR H+ VELAE  L+ L+ +K  + 
Sbjct: 658 IDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAEND 717

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           G+YT++SNI+A    W  VA +R  MKK+  +K  G S V+       F V D+ HP S 
Sbjct: 718 GSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSP 777

Query: 575 QIYQMINTLGKDLKPVGH 592
           +IY ++  L   +K +G+
Sbjct: 778 EIYSLLERLIGRIKVMGY 795



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 165/591 (27%), Positives = 272/591 (46%), Gaps = 89/591 (15%)

Query: 24  LHKCKNLNQTKQLFAQIIKL---------------DLQRDPYIAPK-----LISSLALCR 63
           L +C+++N  +Q+  +II                  L    Y++PK     +++S   C 
Sbjct: 38  LKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTGVVASYLACG 97

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
               A+ V   +       +N L+R  ++     +A  V   M   G   D+FT P+ LK
Sbjct: 98  ATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALK 157

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV-GVSLAKKLFMSMGERD 182
           AC     +   + +H LI   G+  ++FV N+L+  YS+CG +   SL        G  D
Sbjct: 158 ACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDD 217

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMP---------ER--------------------- 212
           ++SWNS++A  VKG     A  LF EM          ER                     
Sbjct: 218 VISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQ 277

Query: 213 ---------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                          DA   N ++D YAK G MN A ++F  +  +++VSW+ MV GY++
Sbjct: 278 IKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQ 337

Query: 258 DGDMEMAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            G+   A  LF+ M  + +    + W+ +I+GYA++G ++EA   + QM   G +P+  T
Sbjct: 338 SGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVT 397

Query: 314 LISILAACAESGLLGLGMKVHA-SINKYRFKCNTN-----------VCNALVDMYAKCGS 361
           +IS+L+ACA  G L  GM++HA S+ K     + +           V NAL+DMY+KC S
Sbjct: 398 IISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRS 457

Query: 362 LDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVG 417
              A S+F+ + +++  +V+W  M+ G A +G    AL +FS M  K     P+ YT   
Sbjct: 458 FKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISC 517

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPV 476
           +L AC H   +  G Q    + R +   P V     C+ID+  + G +  A  +  SMP 
Sbjct: 518 ILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMP- 576

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + N + W +++     H   + A ++ D + +  G  P + + L  ++A +
Sbjct: 577 KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQK-AGFVPDDISFLVLLYACS 626


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 194/561 (34%), Positives = 313/561 (55%), Gaps = 14/561 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+ A I++   ++D  +   LI S   C ++  A K+F+ + + ++  + TL+    QN
Sbjct: 269 KQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQN 328

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           SL+ +A  +F  M + G+  D F    +L +C   +       +HA   K     D +V 
Sbjct: 329 SLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVT 388

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG---ELSEARRLFDEMP 210
           NSLID Y+KC  +  + A+K+F      D+V +N+MI G  + G   EL +A  +F +M 
Sbjct: 389 NSLIDMYAKCDCL--TEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMR 446

Query: 211 ER----DAVSWNTILDGYAKAGEMNLAFE----LFEKIPHRNIVSWSTMVWGYSKDGDME 262
            R      +++ ++L   A    + L+ +    +F+   + +I + S ++  YS    ++
Sbjct: 447 FRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLK 506

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            ++L+FD M  K LV W  + SGY ++   +EA  L+ +++ +  +PD+ T + ++ A  
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAG 566

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
               L LG + H  + K   +CN  + NAL+DMYAKCGS ++A   F+    +D+V WN+
Sbjct: 567 NLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNS 626

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++   A HG+G KAL +  +M  EG  P+  TFVGVL AC+HAG ++ G++ F  M R +
Sbjct: 627 VISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-F 685

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P+ EHY CM+ LLGR+GRL EA  L++ MP +P AI+W +LL  C K   VELAE  
Sbjct: 686 GIEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYA 745

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            +  I     D G++T+LSNI+A+ G W     VR +MK     K  G S +E++ EVH 
Sbjct: 746 AEMAILSDPKDSGSFTLLSNIYASKGMWTDAKKVRERMKFEGVVKEPGRSWIEINKEVHI 805

Query: 563 FSVCDQLHPKSEQIYQMINTL 583
           F   D+ H K+ QIY++++ L
Sbjct: 806 FLSKDKSHCKANQIYEVLDDL 826



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 233/503 (46%), Gaps = 17/503 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL + ++K    RD Y+   LI        +  A  VF+ + +     + T+I  CV+  
Sbjct: 169 QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
            +  + ++F  + E  V  D +    +L AC+   +    + IHA I + G+  D  + N
Sbjct: 229 RSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMN 288

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP---- 210
            LIDSY KCG   V  A KLF  M  ++I+SW ++++G  +     EA  LF  MP    
Sbjct: 289 VLIDSYVKCG--RVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGL 346

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS----TMVWGYSKDGDMEMAKL 266
           + D  + ++IL   A    +    ++       N+ + S    +++  Y+K   +  A+ 
Sbjct: 347 KPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARK 406

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKE---AARLYDQMEEAGLKPDDGTLISILAACAE 323
           +FD   A  +V +  +I GY+  G   E   A  ++  M    ++P   T +S+L A A 
Sbjct: 407 VFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASAS 466

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              LGL  ++H  + K+    +    +AL+ +Y+ C  L ++  VF+ M  KDLV WN+M
Sbjct: 467 LTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSM 526

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
             G     + E+AL LF  ++     PD++TFV ++ A  +   +  G Q F+      G
Sbjct: 527 FSGYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLG-QEFHCQLLKRG 585

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           +         ++D+  + G  ++A +   S     + + W +++ +   H     A ++L
Sbjct: 586 LECNPYITNALLDMYAKCGSPEDAHKAFDS-AASRDVVCWNSVISSYANHGEGRKALQML 644

Query: 504 DCLIRLKGSDPGNYTMLSNIFAA 526
           + ++  +G +P NY     + +A
Sbjct: 645 EKMM-CEGIEP-NYITFVGVLSA 665



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 135/539 (25%), Positives = 238/539 (44%), Gaps = 91/539 (16%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
            QII   L+ D Y++  L++  +    M  A KVF  + + ++  ++T++ AC  +    
Sbjct: 68  GQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYE 127

Query: 98  QAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKN----WFHLVQMIHALIYKCGYFGDIFV 152
           ++  VFLD  + +    + +     ++AC+G +    W  +V  + + + K  +  D++V
Sbjct: 128 ESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRW--MVFQLQSFLVKSRFDRDVYV 185

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM--- 209
              LID Y K G   +  A+ +F ++ E+  V+W +MI+G VK G    + +LF ++   
Sbjct: 186 GTLLIDFYLKEG--NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEG 243

Query: 210 ------------------------------------PERDAVSWNTILDGYAKAGEMNLA 233
                                                E+DA   N ++D Y K G +  A
Sbjct: 244 NVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVRAA 303

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            +LF+ +P++NI+SW+T++ GY ++                                + K
Sbjct: 304 HKLFDGMPNKNIISWTTLLSGYKQN-------------------------------SLHK 332

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA  L+  M + GLKPD     SIL +CA    L  G +VHA   K     ++ V N+L+
Sbjct: 333 EAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTNSLI 392

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG---QGEKALGLFSRMKDEGFGP 410
           DMYAKC  L  A  VF+     D+V +NAM+ G +  G   +   AL +F  M+     P
Sbjct: 393 DMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIRP 452

Query: 411 DKYTFVGVLCACTHAGFIDKGV-QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
              TFV +L A   A     G+ +  + +   +G+   +     +I +      LK++  
Sbjct: 453 SLLTFVSLLRAS--ASLTSLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRL 510

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAA 526
           +   M V+ + +IW ++     + +     EE L+  + L+ S   P  +T +  + AA
Sbjct: 511 VFDEMKVK-DLVIWNSMFSGYVQQSE---NEEALNLFLELQLSRDRPDEFTFVDMVTAA 565



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 204/405 (50%), Gaps = 24/405 (5%)

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L+A +    +H   ++H  I   G   D ++ N L++ YS+ G  G+  A+K+F  M ER
Sbjct: 53  LRALDDPLLYH--NVVHGQIIVSGLELDTYLSNILMNLYSRAG--GMVYARKVFEKMPER 108

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI-----------LDGYAKAGEM 230
           ++V+W++M++     G   E+  +F +       S N             LDG  +    
Sbjct: 109 NLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNSPNEYILSSFIQACSGLDGSGRWMVF 168

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
            L   L +    R++   + ++  Y K+G+++ A+L+FD +P K+ V WT +ISG  + G
Sbjct: 169 QLQSFLVKSRFDRDVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
            +  + +L+ Q+ E  + PD   L ++L+AC+    L  G ++HA I +Y  + + ++ N
Sbjct: 229 RSYVSLQLFYQLMEGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMN 288

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+D Y KCG +  A  +F+GM  K+++SW  +L G   +   ++A+ LF+ M   G  P
Sbjct: 289 VLIDSYVKCGRVRAAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKP 348

Query: 411 DKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           D +    +L +C     ++ G Q + Y+++ + G    V +   +ID+  +   L EA +
Sbjct: 349 DMFACSSILTSCASLHALEFGTQVHAYTIKANLGNDSYVTN--SLIDMYAKCDCLTEARK 406

Query: 470 LVQSMPVEP----NAIIWG-TLLGA-CRKHNAVELAEEVLDCLIR 508
           +      +     NA+I G + LG     H+A+ +  ++   LIR
Sbjct: 407 VFDIFAADDVVLFNAMIEGYSRLGTQWELHDALNIFHDMRFRLIR 451



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/369 (23%), Positives = 167/369 (45%), Gaps = 56/369 (15%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L  +KQ+   + K  L  D +    LI+  + C  +  +  VF++++  D+ ++N++  
Sbjct: 469 SLGLSKQIHGLMFKFGLNLDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFS 528

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             VQ S N +A  +FL++Q      D FT+  ++ A        L Q  H  + K G   
Sbjct: 529 GYVQQSENEEALNLFLELQLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLEC 588

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + ++ N+L+D Y+KCG      A K F S   RD+V WNS+I+     GE  +A ++ ++
Sbjct: 589 NPYITNALLDMYAKCG--SPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEK 646

Query: 209 M----PERDAVSWNTIL----------DG-------------------------YAKAGE 229
           M     E + +++  +L          DG                           +AG 
Sbjct: 647 MMCEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGR 706

Query: 230 MNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRM---PAKTLVPWTIIISG 285
           +N A EL EK+P +   + W +++ G +K G++E+A+   +       K    +T++ + 
Sbjct: 707 LNEARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNI 766

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           YA KGM  +A ++ ++M+  G+  + G              + +  +VH  ++K +  C 
Sbjct: 767 YASKGMWTDAKKVRERMKFEGVVKEPG-----------RSWIEINKEVHIFLSKDKSHCK 815

Query: 346 TNVCNALVD 354
            N    ++D
Sbjct: 816 ANQIYEVLD 824



 Score = 40.4 bits (93), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           +++L  R+G +  A ++ + MP E N + W T++ AC  H   E +  V     R + + 
Sbjct: 85  LMNLYSRAGGMVYARKVFEKMP-ERNLVTWSTMVSACNHHGFYEESLVVFLDFWRTRKNS 143

Query: 514 PGNYTMLSNIFAATG 528
           P  Y + S I A +G
Sbjct: 144 PNEYILSSFIQACSG 158


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 197/620 (31%), Positives = 320/620 (51%), Gaps = 62/620 (10%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNS 94
           A + +     + ++   ++S    C  +  A  +F+D+      D+  +N+++ A +  S
Sbjct: 283 ATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWAS 342

Query: 95  LNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               A  +F  M  + + + D  +   +L AC         + +H    + G   D+FV 
Sbjct: 343 DANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVG 402

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           N+++D Y+KCG   +  A K+F  M  +D+VSWN+M+ G  + G L  A  LF+ M E  
Sbjct: 403 NAVVDMYAKCG--KMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEEN 460

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWG----------- 254
              D V+W  ++ GYA+ G+   A ++F ++       N+V+  +++             
Sbjct: 461 IELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520

Query: 255 --------------------------------YSKDGDMEMAKLLFDRMPAKT--LVPWT 280
                                           Y+K    E+A+ +FD +  K   +V WT
Sbjct: 521 ETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWT 580

Query: 281 IIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASI- 337
           ++I GYA+ G A  A +L+  M   +  +KP+D TL   L ACA    L  G +VHA + 
Sbjct: 581 VMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVL 640

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
             +       V N L+DMY+K G +D A  VF+ M +++ VSW +++ G  MHG+GE AL
Sbjct: 641 RNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDAL 700

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +F  M+     PD  TF+ VL AC+H+G +D G+ +F  M +D+G+ P  EHY CM+DL
Sbjct: 701 RVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDL 760

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
            GR+GRL EA++L+  MP+EP  ++W  LL ACR H+ VEL E   + L+ L+  + G+Y
Sbjct: 761 WGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSY 820

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
           T+LSNI+A    W  VA +R  MK+T  +K  G S ++    V  F V D+ HP+S+QIY
Sbjct: 821 TLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIY 880

Query: 578 QMINTLGKDLKPVGHAAKLS 597
           + +  L + +K +G+  + S
Sbjct: 881 ETLADLIQRIKAIGYVPQTS 900



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 160/558 (28%), Positives = 258/558 (46%), Gaps = 69/558 (12%)

Query: 11  FSKRRLLE---EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           F+  RLL      +  L +C +L   K L  Q I   L    ++A  LI +         
Sbjct: 152 FTNTRLLSCATIPITALKECNSLAHAKLLHQQSIMQGLLF--HLATNLIGTYIASNSTAY 209

Query: 68  AIKVFNDI--QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           AI +   +      V  +N LIR  +        F ++  M+  G   D++T+PF+ KAC
Sbjct: 210 AILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKAC 269

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---D 182
              +   L   +HA + + G+  ++FV N+++  Y KCG   +  A  +F  +  R   D
Sbjct: 270 ANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCG--ALRHAHNMFDDLCHRGIQD 327

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPER------------------------------ 212
           +VSWNS+++  +   + + A  LF +M  R                              
Sbjct: 328 LVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVH 387

Query: 213 ----------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
                     D    N ++D YAK G+M  A ++F+++  +++VSW+ MV GYS+ G +E
Sbjct: 388 GFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLE 447

Query: 263 MAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
            A  LF+RM  + +    V WT +I+GYA++G   EA  ++ QM + G +P+  TL+S+L
Sbjct: 448 HALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLL 507

Query: 319 AACAESGLLGLGMKVHASINKYRFKC--------NTNVCNALVDMYAKCGSLDNAMSVFN 370
           +AC   G L  G + H    K+            +  V N L+DMYAKC S + A  +F+
Sbjct: 508 SACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFD 567

Query: 371 GMTKK--DLVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHAG 426
            ++ K  D+V+W  M+ G A HG    AL LFS M   D+   P+ +T    L AC    
Sbjct: 568 SVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLA 627

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +  G Q    + R++     +    C+ID+  +SG +  A  +  +MP + NA+ W +L
Sbjct: 628 ALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVSWTSL 686

Query: 487 LGACRKHNAVELAEEVLD 504
           +     H   E A  V D
Sbjct: 687 MTGYGMHGRGEDALRVFD 704


>gi|115441777|ref|NP_001045168.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|20161377|dbj|BAB90301.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113534699|dbj|BAF07082.1| Os01g0912900 [Oryza sativa Japonica Group]
 gi|125573076|gb|EAZ14591.1| hypothetical protein OsJ_04514 [Oryza sativa Japonica Group]
          Length = 533

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 176/446 (39%), Positives = 267/446 (59%), Gaps = 3/446 (0%)

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVS 169
           V  D+F+ PF L A        L   +HAL  +       + V N+L+D Y+KC    + 
Sbjct: 77  VSPDHFSLPFALNAAASLRLLPLGASLHALALRLALLPCRLPVANALVDLYAKCD--DLP 134

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
            A      +   D VS+NS++    +   + +A  LF  MP R  VSWN ++  Y  AG+
Sbjct: 135 AAHTALADIAAPDAVSFNSLLCAHARLASVPDAESLFVAMPSRTQVSWNAMVVVYVNAGD 194

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           ++ A  +F+++P R+  SWS ++ GY K G M  A+ +FDRMPAK LV WT +I+GYA+ 
Sbjct: 195 VSSARRVFDQMPTRDSTSWSVLIVGYCKCGSMRSAREVFDRMPAKNLVAWTAMINGYAQS 254

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+ KE+  L+ +ME AG++PD  T++ +++A ++ G   L   V + ++K R + N  V 
Sbjct: 255 GVPKESLALFREMEAAGIEPDAATMVGVISAASQIGSTELAGWVGSYVDKKRIERNDKVL 314

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            ALVDM+AKCG++D A+S F  + + D   + A++ GLA HG  + AL +F RM+ +   
Sbjct: 315 TALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLALQVFERMQAQSVW 374

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           PD  TFVGVL AC+HAG +DKG+ Y+ +M + YG+  + +HY C++D+LGR+GRL+EA  
Sbjct: 375 PDPITFVGVLTACSHAGLVDKGLDYWEAMVKYYGMERRADHYACVVDMLGRAGRLEEAFE 434

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           +VQ+MP+ P+    G LL AC+ H  VE+AE V + L  L+  + GNY MLSNI+A    
Sbjct: 435 MVQTMPMGPHPGALGALLSACKTHGNVEIAEIVANKLFELEPHNTGNYIMLSNIYAEKEQ 494

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVE 555
           W +   +R  M+     K  G+S VE
Sbjct: 495 WEEAERIRSVMRTRLPFKQPGSSWVE 520



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 41/87 (47%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           + K  ++R+  +   L+   A C  +  A+  F +I  PD + Y  LI     +     A
Sbjct: 302 VDKKRIERNDKVLTALVDMHAKCGNVDEALSAFREIAQPDAYPYTALISGLAAHGHAKLA 361

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACN 126
            +VF  MQ + V+ D  T+  +L AC+
Sbjct: 362 LQVFERMQAQSVWPDPITFVGVLTACS 388


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 312/569 (54%), Gaps = 13/569 (2%)

Query: 34   KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
            KQ+   +++  L +   +   LI+       +  A  VF  + + D+  +NT+I  C  +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 94   SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFV 152
             L   +  +F+ +    +  D FT   +L+AC+  +  ++L   IHA   K G   D FV
Sbjct: 1015 GLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFV 1074

Query: 153  PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              +LID YSK G   +  A+ LF++    D+ SWN+++ G +  G+  +A RL+  M E 
Sbjct: 1075 STALIDVYSKRG--KMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQES 1132

Query: 213  DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS---------WSTMVWGYSKDGDMEM 263
               S    L   AKA    +  +  ++I H  +V           S ++  Y K G+ME 
Sbjct: 1133 GERSDQITLVNAAKAAGGLVGLKQGKQI-HAVVVKRGFNLDLFVTSGVLDMYLKCGEMES 1191

Query: 264  AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
            A+ +F  +P+   V WT +ISG  E G  + A   Y QM  + ++PD+ T  +++ AC+ 
Sbjct: 1192 ARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSL 1251

Query: 324  SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
               L  G ++HA+I K     +  V  +LVDMYAKCG++++A  +F     + + SWNAM
Sbjct: 1252 LTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAM 1311

Query: 384  LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
            + GLA HG  ++AL  F  MK  G  PD+ TF+GVL AC+H+G + +  + FYSM+++YG
Sbjct: 1312 IVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYG 1371

Query: 444  ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
            I P++EHY C++D L R+GR++EA +++ SMP E +A ++ TLL ACR     E  + V 
Sbjct: 1372 IEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVA 1431

Query: 504  DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
            + L+ L+ SD   Y +LSN++AA   W  VA+ R  M+K   +K  G S V++ N+VH F
Sbjct: 1432 EKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLF 1491

Query: 564  SVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
               D+ H +++ IY  +  + K ++  G+
Sbjct: 1492 VAGDRSHEETDVIYNKVEYIMKRIREEGY 1520



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 153/586 (26%), Positives = 265/586 (45%), Gaps = 68/586 (11%)

Query: 36   LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN---------DIQDPDVHLYNTL 86
            LF++  +   + D  +  + +S +  C++  L +K F          D    DV ++N  
Sbjct: 848  LFSEFHRTGFRPDD-VTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKA 906

Query: 87   IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
            +   +Q     +A   F+DM    V  D  T+  +L    G N   L + IH ++ + G 
Sbjct: 907  LSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGL 966

Query: 147  FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
               + V N LI+ Y K G   VS A+ +F  M E D++SWN+MI+G    G    +  +F
Sbjct: 967  DQVVSVGNCLINMYVKAG--SVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMF 1024

Query: 207  DE------MPERDAV-----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                    +P++  V     + +++  GY  A +++ A  +   +   + VS + ++  Y
Sbjct: 1025 VHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIH-ACAMKAGVVLDSFVS-TALIDVY 1082

Query: 256  SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            SK G ME A+ LF       L  W  I+ GY   G   +A RLY  M+E+G + D  TL+
Sbjct: 1083 SKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLV 1142

Query: 316  SILAACAESGLLGL--GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +  AA A  GL+GL  G ++HA + K  F  +  V + ++DMY KCG +++A  VF+ + 
Sbjct: 1143 N--AAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP 1200

Query: 374  KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
              D V+W  M+ G   +GQ E AL  + +M+     PD+YTF  ++ AC+    +++G Q
Sbjct: 1201 SPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQ 1260

Query: 434  YFY-------------------------SMERDYGILP-----QVEHYGCMIDLLGRSGR 463
                                        ++E   G+       ++  +  MI  L + G 
Sbjct: 1261 IHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGN 1320

Query: 464  LKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP--GNYT 518
             KEAL+  + M    V P+ + +  +L AC     V  A E    + +  G +P   +Y+
Sbjct: 1321 AKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYS 1380

Query: 519  MLSNIFAATGDWNK----VANVRLQMKKTRAQKPSGASSVEVDNEV 560
             L +  +  G   +    ++++  +   +  +    A  V+VD E 
Sbjct: 1381 CLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRET 1426



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 200/448 (44%), Gaps = 36/448 (8%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP--DVHLYNTL 86
            +L+  K+  A+I+      D ++   LI+  A C  +  A K+F+   D   D+  +N +
Sbjct: 671  DLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAI 730

Query: 87   IRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
            + A   ++  +   F +F  ++   V T   T   + K C         + +H    K G
Sbjct: 731  LSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIG 790

Query: 146  YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
               D+FV  +L++ Y+K G+  +  A+ LF  M  RD+V WN M+   V      EA  L
Sbjct: 791  LQWDVFVAGALVNIYAKFGL--IREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLL 848

Query: 206  FDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
            F E        D V+  T L    K  +  L  + F+        +++T ++ Y  DG  
Sbjct: 849  FSEFHRTGFRPDDVTLRT-LSRVVKCKKNILELKQFK--------AYATKLFMYDDDG-- 897

Query: 262  EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
                          ++ W   +S + ++G A EA   +  M  + +  D  T + +L   
Sbjct: 898  ------------SDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVV 945

Query: 322  AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            A    L LG ++H  + +       +V N L++MY K GS+  A SVF  M + DL+SWN
Sbjct: 946  AGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWN 1005

Query: 382  AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--HAGFIDKGVQYFYSME 439
             M+ G  + G  E ++G+F  +  +   PD++T   VL AC+    G+      +  +M+
Sbjct: 1006 TMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMK 1065

Query: 440  RDYGILPQVEHYGCMIDLLGRSGRLKEA 467
               G++        +ID+  + G+++EA
Sbjct: 1066 A--GVVLDSFVSTALIDVYSKRGKMEEA 1091



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/252 (30%), Positives = 121/252 (48%), Gaps = 11/252 (4%)

Query: 30   LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            L Q KQ+ A ++K     D ++   ++     C +M  A +VF++I  PD   + T+I  
Sbjct: 1154 LKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISG 1213

Query: 90   CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            CV+N     A   +  M+   V  D +T+  L+KAC+        + IHA I K     D
Sbjct: 1214 CVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD 1273

Query: 150  IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             FV  SL+D Y+KCG   +  A+ LF     R I SWN+MI GL + G   EA + F  M
Sbjct: 1274 PFVMTSLVDMYAKCG--NIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYM 1331

Query: 210  PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDGD 260
              R    D V++  +L   + +G ++ A+E F  +         I  +S +V   S+ G 
Sbjct: 1332 KSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGR 1391

Query: 261  MEMAKLLFDRMP 272
            +E A+ +   MP
Sbjct: 1392 IEEAEKVISSMP 1403



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 9/194 (4%)

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-- 372
            SIL     +  L LG + HA I       +  V N L+ MYAKCGSL +A  +F+    
Sbjct: 660 FSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPD 719

Query: 373 TKKDLVSWNAMLYGLAMHG-QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           T +DLV+WNA+L  LA H  +      LF  ++       ++T   V   C  +      
Sbjct: 720 TNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSA-SPSA 778

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA-- 489
            +  +      G+   V   G ++++  + G ++EA  L   M V  + ++W  ++ A  
Sbjct: 779 SESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVR-DVVLWNVMMKAYV 837

Query: 490 --CRKHNAVELAEE 501
             C ++ A+ L  E
Sbjct: 838 DTCLEYEAMLLFSE 851


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  338 bits (866), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 315/575 (54%), Gaps = 8/575 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +++ AQ +K       ++   L++  A C  +  A  VF  ++  D+  +NTL+   V N
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLN 284

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
             + +A ++F D +         TY  ++K C       L + +H+ + K G+     V 
Sbjct: 285 GHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM 344

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            +L+D+YSK G +G +L   L MS G +++VSW +MI G ++ G++  A  LF  M E D
Sbjct: 345 TALMDAYSKAGQLGNALDIFLLMS-GSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE-D 402

Query: 214 AV-----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
            V     +++TIL     +    +  ++ +       +  + ++  YSK  + E A  +F
Sbjct: 403 GVAPNDFTYSTILTASVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIF 462

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE-SGLL 327
             +  K +V W+ +++ YA+ G +  A  ++ +M   GLKP++ T+ S++ ACA  +  +
Sbjct: 463 KMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGV 522

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG + HA   K+R      V +ALV MYA+ GS+++A  +F   T +DLVSWN+ML G 
Sbjct: 523 DLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGY 582

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A HG  +KAL +F +M+ EG   D  TF+ V+  C HAG +++G +YF SM RDYGI P 
Sbjct: 583 AQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPT 642

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           +EHY CM+DL  R+G+L EA+ L++ M      ++W TLLGAC+ H  VEL +   + L+
Sbjct: 643 MEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLL 702

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L+  D   Y +LSNI++A G W +   VR  M   + +K +G S +++ N+VH F   D
Sbjct: 703 SLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASD 762

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGE 602
           + HP SEQIY  +  +   LK  G+    S  + E
Sbjct: 763 KSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHE 797



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 228/447 (51%), Gaps = 24/447 (5%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           KVF  +   +V  + +L+   +Q+   +    +F  M+ +GV+ ++ T+  +L     + 
Sbjct: 160 KVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQG 219

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L + +HA   K G    +FV NSL++ Y+KCG+  V  A+ +F  M  RD+VSWN++
Sbjct: 220 MVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGL--VEEARVVFCGMETRDMVSWNTL 277

Query: 190 IAGLVKGGELSEARRLFDEMPERDAV------SWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +AGLV  G   EA +LF +   R ++      ++ T++   A   ++ LA +L   +  R
Sbjct: 278 MAGLVLNGHDLEALQLFHD--SRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKR 335

Query: 244 NIVSW----STMVWGYSKDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARL 298
              S+    + ++  YSK G +  A  +F  M  ++ +V WT +I+G  + G    AA L
Sbjct: 336 GFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAAL 395

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           + +M E G+ P+D T  +IL A   S    L  ++HA + K  ++C + V  AL+  Y+K
Sbjct: 396 FSRMREDGVAPNDFTYSTILTASVAS----LPPQIHAQVIKTNYECTSIVGTALLASYSK 451

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
             + + A+S+F  + +KD+VSW+AML   A  G  + A  +F +M   G  P+++T   V
Sbjct: 452 LCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSV 511

Query: 419 L--CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           +  CA   AG +D G Q F+++   +     +     ++ +  R G ++ A + +     
Sbjct: 512 IDACASPTAG-VDLGRQ-FHAISIKHRCHDALCVSSALVSMYARKGSIESA-QCIFERQT 568

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVL 503
           + + + W ++L    +H   + A +V 
Sbjct: 569 DRDLVSWNSMLSGYAQHGYSQKALDVF 595



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 196/407 (48%), Gaps = 26/407 (6%)

Query: 27  CKNLNQ---TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPDVHL 82
           C N+ Q    +QL + ++K        +   L+ + +   Q+G A+ +F  +    +V  
Sbjct: 316 CANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +  +I  C+QN     A  +F  M+E GV  ++FTY  +L A        L   IHA + 
Sbjct: 376 WTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS----LPPQIHAQVI 431

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K  Y     V  +L+ SYSK  +     A  +F  + ++D+VSW++M+    + G+   A
Sbjct: 432 KTNYECTSIVGTALLASYSK--LCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGA 489

Query: 203 RRLFDEMP----ERDAVSWNTILDGYAK--AG-EMNLAFELFEKIPHR---NIVSWSTMV 252
             +F +M     + +  + ++++D  A   AG ++   F     I HR    +   S +V
Sbjct: 490 TNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAIS-IKHRCHDALCVSSALV 548

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y++ G +E A+ +F+R   + LV W  ++SGYA+ G +++A  ++ QME  G++ D  
Sbjct: 549 SMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGV 608

Query: 313 TLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T +S++  CA +GL+  G +   S+ + Y           +VD+Y++ G LD AMS+  G
Sbjct: 609 TFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEG 668

Query: 372 MT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFV 416
           M+     + W  +L    +H   E  LG  +  K     P D  T+V
Sbjct: 669 MSFPAGPMVWRTLLGACKVHKNVE--LGKLAAEKLLSLEPFDSATYV 713



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 191/424 (45%), Gaps = 86/424 (20%)

Query: 49  PYIAPKLISSLA----LCRQMGL-----AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           P +APK  S+LA    L  Q  L     A + F++I   +  L + L     + S++ QA
Sbjct: 29  PELAPKSQSTLACSVPLENQTNLNDATGARQAFDEIPHRNT-LDHALFDHARRGSVH-QA 86

Query: 100 FRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLI 157
              FLD+    G          +LK C       L + +H L  +CG+  GD+ V  SL+
Sbjct: 87  LDHFLDVHRCHGGRVGGGALVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLV 146

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
           D Y K                       W+S++ G          R++F+ MP+R+ V+W
Sbjct: 147 DMYMK-----------------------WHSVVDG----------RKVFEAMPKRNVVTW 173

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMV--------------------- 252
            ++L GY + G ++   ELF ++       N V++++++                     
Sbjct: 174 TSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK 233

Query: 253 WG--------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
           +G              Y+K G +E A+++F  M  + +V W  +++G    G   EA +L
Sbjct: 234 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQL 293

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +     +       T  +++  CA    LGL  ++H+S+ K  F    NV  AL+D Y+K
Sbjct: 294 FHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSK 353

Query: 359 CGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
            G L NA+ +F  M+  +++VSW AM+ G   +G    A  LFSRM+++G  P+ +T+  
Sbjct: 354 AGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYST 413

Query: 418 VLCA 421
           +L A
Sbjct: 414 ILTA 417



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 10/278 (3%)

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M W    DG     + +F+ MP + +V WT +++GY + G   +   L+ +M   G+ P+
Sbjct: 150 MKWHSVVDG-----RKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPN 204

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T  S+L+  A  G++ LG +VHA   K+       VCN+L++MYAKCG ++ A  VF 
Sbjct: 205 SVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 264

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
           GM  +D+VSWN ++ GL ++G   +AL LF   +       + T+  V+  C +   +  
Sbjct: 265 GMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGL 324

Query: 431 GVQYFYS-MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
             Q   S ++R +     V     ++D   ++G+L  AL +   M    N + W  ++  
Sbjct: 325 ARQLHSSVLKRGFHSYGNV--MTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMING 382

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           C ++  V LA  +    +R  G  P ++T  S I  A+
Sbjct: 383 CIQNGDVPLAAALFS-RMREDGVAPNDFT-YSTILTAS 418



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA-RLYDQMEEAGLKPDDGTLISIL 318
           D   A+  FD +P +  +   +    +A +G   +A     D     G +   G L+ +L
Sbjct: 53  DATGARQAFDEIPHRNTLDHALF--DHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVL 110

Query: 319 AACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
             C       LG ++H   I     + +  V  +LVDMY K  S+ +   VF  M K+++
Sbjct: 111 KVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNV 170

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V+W ++L G    G     + LF RM+ EG  P+  TF  VL      G +D G +  ++
Sbjct: 171 VTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG-RRVHA 229

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
               +G    V     ++++  + G ++EA  +   M    + + W TL+ 
Sbjct: 230 QSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLMA 279


>gi|255559617|ref|XP_002520828.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539959|gb|EEF41537.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 656

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 197/562 (35%), Positives = 308/562 (54%), Gaps = 28/562 (4%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K K+L Q + LF +I + ++  D      +IS      ++  A +VF+ + + +V  + +
Sbjct: 94  KNKDLPQAEILFREIPERNVVADS----AMISGYVRAGRLDKARQVFDQMVERNVFSWTS 149

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-----KNWFHLVQMIHAL 140
           L+    +     +A R+F  M EK V +  +T   +  A NG     ++ F+  QM    
Sbjct: 150 LVSGYFKIGNVDEAMRLFNQMPEKNVVS--WTTAVVGYAQNGFIDEARDIFN--QMPEKN 205

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I         +V N  ID            A +LF  M +R++ SWN MI+G +    L+
Sbjct: 206 IIAWTAMVKSYVENDEIDE-----------AFELFYQMPQRNLYSWNIMISGCINANRLN 254

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           EA +LF+ MP+R+ VSW T++ G A+ G M LA + F+ +P ++I +W+ M+  Y   G 
Sbjct: 255 EAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKDIAAWNAMITAYVDQGS 314

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           M  A  LF+ MP K +V W  +I GYA  G    + R    M  +  KP++ T+ S+L A
Sbjct: 315 MAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLRSNFKPNETTITSVLTA 374

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C    +L L M+ H  +    F+ +  + N LV  Y++CG + +A  +F+ +  KD+VSW
Sbjct: 375 C--DSILEL-MQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSW 431

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            AM+   + HG G  AL +F+RM   G  PD  TFVG+L AC+HAG + KG   F SM  
Sbjct: 432 TAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSMSC 491

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV-EPNAIIWGTLLGACRKHNAVELA 499
            YG+ P+ EHY C++D+LGR+G + +A+++V  MP  E +  + G LLGACR H  V LA
Sbjct: 492 AYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGACRLHKDVGLA 551

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
             + + LI  + +  G+Y +L+N +AA G WN+ A VR +MK+   +K  G S +EV  +
Sbjct: 552 NHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNVKKEPGFSQIEVKGK 611

Query: 560 VHEFSVCDQLHPKSEQIYQMIN 581
            H F V D+ HP+ E+IY  ++
Sbjct: 612 SHVFFVRDRSHPQLEEIYLFLD 633



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/467 (26%), Positives = 202/467 (43%), Gaps = 87/467 (18%)

Query: 161 SKCGVVG-VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           S  G+ G V  A+K+F  M  RD VS+ SMI   +K  +L +A  LF E+PER+ V+ + 
Sbjct: 59  SNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIPERNVVADSA 118

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++ GY +AG ++ A ++F+++  RN+ SW+++V GY K G+++ A  LF++MP K +V W
Sbjct: 119 MISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQMPEKNVVSW 178

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGL------------KPDDGTLISILAACAESGLL 327
           T  + GYA+ G   EA  +++QM E  +              +      +     +  L 
Sbjct: 179 TTAVVGYAQNGFIDEARDIFNQMPEKNIIAWTAMVKSYVENDEIDEAFELFYQMPQRNLY 238

Query: 328 GLGMKVHASINKYRFKCNTNVCNA-----------LVDMYAKCGSLD------------- 363
              + +   IN  R      + N+           LV   A+ G ++             
Sbjct: 239 SWNIMISGCINANRLNEAIQLFNSMPQRNEVSWTTLVTGLARNGMMELARKYFDHMPTKD 298

Query: 364 ----NAM--------------SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
               NAM              ++FN M +K++VSWNA++ G A +G    +L     M  
Sbjct: 299 IAAWNAMITAYVDQGSMAEASNLFNLMPEKNIVSWNALIDGYARNGPESNSLRYLILMLR 358

Query: 406 EGFGPDKYTFVGVLCAC-------------THAGF-----IDKGVQYFYSMERDY----G 443
             F P++ T   VL AC              H GF     +  G+   YS   D      
Sbjct: 359 SNFKPNETTITSVLTACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARF 418

Query: 444 ILPQVE-----HYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNA 495
           I  Q+E      +  MI      G    AL++   M     +P+ I +  LL AC     
Sbjct: 419 IFDQLEIKDIVSWTAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGL 478

Query: 496 VELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVANVRLQM 540
           V+  + + D +    G +P   +Y+ L +I    G+ NK   V  +M
Sbjct: 479 VKKGQMLFDSMSCAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEM 525



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 167/345 (48%), Gaps = 20/345 (5%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D    N  I+ L   G++ EAR++FDEMP RDAVS+ +++  Y K  ++  A  LF +IP
Sbjct: 50  DTYESNVKISNLGLRGKVKEARKVFDEMPRRDAVSYASMITVYLKNKDLPQAEILFREIP 109

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            RN+V+ S M+ GY + G ++ A+ +FD+M  + +  WT ++SGY + G   EA RL++Q
Sbjct: 110 ERNVVADSAMISGYVRAGRLDKARQVFDQMVERNVFSWTSLVSGYFKIGNVDEAMRLFNQ 169

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M E  +     +  + +   A++G +     +   + +     N     A+V  Y +   
Sbjct: 170 MPEKNVV----SWTTAVVGYAQNGFIDEARDIFNQMPEK----NIIAWTAMVKSYVENDE 221

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +D A  +F  M +++L SWN M+ G     +  +A+ LF+ M       ++ ++  ++  
Sbjct: 222 IDEAFELFYQMPQRNLYSWNIMISGCINANRLNEAIQLFNSMPQR----NEVSWTTLVTG 277

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
               G ++   +YF     D+     +  +  MI      G + EA  L   MP E N +
Sbjct: 278 LARNGMMELARKYF-----DHMPTKDIAAWNAMITAYVDQGSMAEASNLFNLMP-EKNIV 331

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
            W  L+    ++     +   L  ++ L+ +   N T ++++  A
Sbjct: 332 SWNALIDGYARNGPESNSLRYL--ILMLRSNFKPNETTITSVLTA 374



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 97/227 (42%), Gaps = 6/227 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C ++ +  Q    +I L  ++D  +A  L+++ + C  +  A  +F+ ++  D+  +
Sbjct: 372 LTACDSILELMQAHGLVIHLGFEQDKVLANGLVTTYSRCGDVLSARFIFDQLEIKDIVSW 431

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
             +I A   +     A +VF  M   G   D  T+  LL AC+        QM+   +  
Sbjct: 432 TAMILAYSNHGCGPHALQVFARMLRSGAKPDGITFVGLLSACSHAGLVKKGQMLFDSM-S 490

Query: 144 CGYFGDIFVPN--SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           C Y  +    +   L+D   + G +  ++     M   E D     +++       ++  
Sbjct: 491 CAYGVEPRAEHYSCLVDILGRAGEMNKAMKVVSEMPPHECDGAVLGALLGACRLHKDVGL 550

Query: 202 ARRLFDEMPERDAV---SWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           A  + +++ E++     S+  + + YA  G+ N   E+ +++  RN+
Sbjct: 551 ANHIGEKLIEKEPTSSGSYVLLANAYAACGKWNEFAEVRKEMKERNV 597


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 202/582 (34%), Positives = 316/582 (54%), Gaps = 21/582 (3%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVH 81
           L  C+N+    ++    +K     D Y+A  LI     CR   +  A  +F+++   D+ 
Sbjct: 160 LKACRNVTDGNKIHCLALKFGFMWDVYVAASLIH--LYCRYGAVVNARILFDEMPTRDMG 217

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            +N +I    Q+    +A    L + +     D+ T   LL AC     F+    IH+  
Sbjct: 218 SWNAMISGYCQSGNAKEA----LTLSDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYS 273

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G   ++FV N LID Y++ G   +   +K+F  M  RD++SWNS+I       +   
Sbjct: 274 IKHGLESELFVSNKLIDLYAEFG--SLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLR 331

Query: 202 ARRLFDEMP----ERDAVSWNTILDGYAKAGEMNL-----AFELFEKIPHRNIVSWSTMV 252
           A  LF EM     + D ++  ++    ++ GE+        F L +     +I   + +V
Sbjct: 332 AILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVV 391

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG--LKPD 310
             Y+K G ++ A+ +F+ +P K ++ W  IISGYA+ G A EA  +Y+ MEE G  +  +
Sbjct: 392 VMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISAN 451

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            GT +S+L AC+++G L  GMK+H  + K     +  V  +L DMY KCG LD+A+S+F 
Sbjct: 452 QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFY 511

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            + + + V WN ++     HG GEKA+ LF  M DEG  PD  TFV +L AC+H+G +D+
Sbjct: 512 QIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDE 571

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G   F  M+ DYGI P ++HYGCM+DL GR+G+L+ AL  ++SMP++P+A IWG LL AC
Sbjct: 572 GEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSAC 631

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
           R H  V+L +   + L  ++    G + +LSN++A+ G W  V  +R        +K  G
Sbjct: 632 RVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPG 691

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            SS+EVDN+V  F   +Q HP  E++Y+ +  L + LK VG+
Sbjct: 692 WSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGY 733



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 153/523 (29%), Positives = 264/523 (50%), Gaps = 31/523 (5%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C NL   K L A+++  +  ++  I+ KL++       + LA   F+ I + DV+ +N +
Sbjct: 64  CTNLQSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLM 123

Query: 87  IRACVQNSLNAQAFRVF-LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           I    +   +++  R F L M   G+  D  T+P +LKAC           IH L  K G
Sbjct: 124 ISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVT---DGNKIHCLALKFG 180

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D++V  SLI  Y + G   V  A+ LF  M  RD+ SWN+MI+G  + G   EA  L
Sbjct: 181 FMWDVYVAASLIHLYCRYG--AVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL 238

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-KIPH---RNIVSWSTMVWGYSKDGDM 261
            D +   D+V+  ++L    +AG+ N    +    I H     +   + ++  Y++ G +
Sbjct: 239 SDGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSL 298

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           +  + +FDRM  + L+ W  II  Y        A  L+ +M  + ++PD  TLIS+ +  
Sbjct: 299 KDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASIL 358

Query: 322 AESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           ++ G +     V   ++ K  F  +  + NA+V MYAK G +D+A +VFN +  KD++SW
Sbjct: 359 SQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISW 418

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           N ++ G A +G   +A+ +++ M++EG     ++ T+V VL AC+ AG + +G++    +
Sbjct: 419 NTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRL 478

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----N 494
            ++ G+   V     + D+ G+ GRL +AL L   +P   N++ W TL+     H     
Sbjct: 479 LKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEK 536

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-------GDW 530
           AV L +E+LD     +G  P + T ++ + A +       G+W
Sbjct: 537 AVMLFKEMLD-----EGVKPDHITFVTLLSACSHSGLVDEGEW 574


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 323/602 (53%), Gaps = 61/602 (10%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           ++   L+S    C     A +VF+++++    D+  +N+++ A +Q   + +A ++F  M
Sbjct: 181 FVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERM 240

Query: 107 QEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
            E  G+  D  +   +L AC     +   + +H    + G F D+FV N+++D Y+KCG+
Sbjct: 241 TEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGM 300

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
           +    A K+F  M  +D+VSWN+M+ G  + G   +A  LF+++ E     + V+W+ ++
Sbjct: 301 M--EEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVI 358

Query: 222 DGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWG----------------------- 254
            GYA+ G    A ++F ++       N+V+  +++ G                       
Sbjct: 359 AGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILN 418

Query: 255 -------------------YSKDGDMEMAKLLFDRMPAK--TLVPWTIIISGYAEKGMAK 293
                              YSK    + A+ +FD +P K  ++V WT++I G A+ G A 
Sbjct: 419 LDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEAN 478

Query: 294 EAARLYDQMEEAG--LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT-NVCN 350
           EA  L+ QM +    + P+  T+   L ACA  G L  G ++HA + + RF+     V N
Sbjct: 479 EALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 538

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+DMY+K G +D A  VF+ M +++ VSW +++ G  MHG+GE+AL +F  M+     P
Sbjct: 539 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVP 598

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TFV VL AC+H+G +D+G+ YF  M +D+G++P  EHY CM+DLL R+GRL EA+ L
Sbjct: 599 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 658

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++ MP++P   +W  LL ACR +  VEL E   + L+ L+  + G+YT+LSNI+A    W
Sbjct: 659 IRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCW 718

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             VA +R  MK T  +K  G S V+       F   D  HP S+QIY ++  L + +K +
Sbjct: 719 KDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKAL 778

Query: 591 GH 592
           G+
Sbjct: 779 GY 780



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 161/541 (29%), Positives = 263/541 (48%), Gaps = 68/541 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL- 82
            H+CK+L   +    Q++   L  DP     +IS          A+ V   +  P  H  
Sbjct: 55  FHQCKSLASAELTHQQLLVQGLPHDP---THIISMYLTFNSPAKALSVLRRLH-PSSHTV 110

Query: 83  --YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N LIR  V         +++  MQ  G   D++T+PF+LKAC     F     +HA+
Sbjct: 111 FWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAV 170

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGG 197
           ++  G+  ++FV N L+  Y +CG      A+++F  M ER   D+VSWNS++A  ++GG
Sbjct: 171 VFASGFEWNVFVGNGLVSMYGRCG--AWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 198 ELSEARRLFDEMPER-----DAVS-------------W---------------------- 217
           +   A ++F+ M E      DAVS             W                      
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVG 288

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK--- 274
           N ++D YAK G M  A ++FE++  +++VSW+ MV GYS+ G  + A  LF+++  +   
Sbjct: 289 NAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIE 348

Query: 275 -TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
             +V W+ +I+GYA++G+  EA  ++ QM   G +P+  TL+S+L+ CA +G L  G + 
Sbjct: 349 LNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKET 408

Query: 334 HASINKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWNAML 384
           H    K+    + N       V NAL+DMY+KC S   A ++F+ +  KD  +V+W  ++
Sbjct: 409 HCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI 468

Query: 385 YGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
            G A HG+  +AL LFS+M   D    P+ +T    L AC   G +  G Q    + R+ 
Sbjct: 469 GGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNR 528

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
                +    C+ID+  +SG + +A R+V     + N + W +L+     H   E A ++
Sbjct: 529 FESAMLFVANCLIDMYSKSGDV-DAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQI 587

Query: 503 L 503
            
Sbjct: 588 F 588


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 200/626 (31%), Positives = 328/626 (52%), Gaps = 49/626 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +L Q +++  ++    L     +A  L++  A    +G A ++F  +Q  D   +
Sbjct: 117 LGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSW 176

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I A  Q+   + A R+F +M+   +  ++ TY  ++   +        + IHA I  
Sbjct: 177 NAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  D+ V  +LI+ Y KCG      A+++F  M +RD+VSWN MI   V+ G+  EA 
Sbjct: 236 NGFDSDLVVATALINMYGKCG--SSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEAL 293

Query: 204 RLFDEMP----ERDAVSWNTILDG-----------------------------------Y 224
            L+ ++     +R   ++ +IL                                     Y
Sbjct: 294 ELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG---DMEMAKLLFDRMPAKTLVPWTI 281
           AK G +  A ++F  + +R+ V+WST++  Y+ +G   D   A+ +FDR+ ++  + W  
Sbjct: 354 AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNA 413

Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +I+ Y + G A  A +++ +M   AGLKPD  T I++L ACA  G L     +HA I++ 
Sbjct: 414 MITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES 473

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             + N  V N L++MYA+CGSL+ A  +F    +K +VSW AM+   + +G+  +AL LF
Sbjct: 474 ELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLF 533

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             M  EG  PD  T+  +L  CTH G +++G +YF  M   +G+ P  +H+  M+DLLGR
Sbjct: 534 QEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGR 593

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           SGRL +A  L++SMP EP+ + W T L ACR H  +EL E   + +  L  S    Y  +
Sbjct: 594 SGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAM 653

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SNI+AA G W KVA+VR +M++   +K  G S +EVD ++HEFS   + HP++++I + +
Sbjct: 654 SNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEEL 713

Query: 581 NTLGKDLKPVGHAAKLSA---EIGEG 603
             L   ++  G+     A   ++ EG
Sbjct: 714 TRLHGLMRAAGYVPDTKAVLHDVSEG 739



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 149/551 (27%), Positives = 253/551 (45%), Gaps = 64/551 (11%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN--DIQDPDVHLYN 84
           C ++ + + L  +I     +RD  +   LIS    C  +  A  VF   D +  +V  +N
Sbjct: 20  CGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ--MIHALIY 142
            +I A  QN  + +A  ++  M  +G+ TD+ T+  +L AC+      L Q   IH  ++
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS-----LAQGREIHNRVF 134

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
             G      + N+L+  Y++ G VG   AK++F S+  RD  SWN++I    + G+ S A
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGD--AKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192

Query: 203 RRLFDEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGY 255
            R+F EM    + ++ ++  ++ G++    +    ++  +I       ++V  + ++  Y
Sbjct: 193 LRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMY 252

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K G    A+ +FD+M  + +V W ++I  Y + G   EA  LY +++  G K    T +
Sbjct: 253 GKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFV 312

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           SIL AC+    L  G  VH+ I +        V  ALV+MYAKCGSL+ A  VFN M  +
Sbjct: 313 SILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR 372

Query: 376 DLVSWNAMLYGLAMHGQGE---KALGLFSRMKDE-------------------------- 406
           D V+W+ ++   A +G G+   KA  +F R+                             
Sbjct: 373 DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFR 432

Query: 407 ------GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
                 G  PD  TF+ VL AC   G + + V+  ++   +  +   V     +I++  R
Sbjct: 433 EMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYAR 491

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGAC----RKHNAVELAEEVLDCLIRLKGSDPGN 516
            G L+EA RL  +   E   + W  ++ A     R   A++L +E     + L+G  P +
Sbjct: 492 CGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYAEALDLFQE-----MDLEGVKPDD 545

Query: 517 YTMLSNIFAAT 527
            T  S +F  T
Sbjct: 546 VTYTSILFVCT 556



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 12/182 (6%)

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PD+ T +++L +C+  G +  G  +H  I   RF+ +T V NAL+ MY KC SL +A S
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 368 VFNGM--TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH- 424
           VF  M   ++++VSWNAM+   A +G   +AL L+ RM  +G G D  TFV VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP----NA 480
           A   +   + FYS    +  L        ++ +  R G + +A R+ QS+        NA
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANA-----LVTMYARFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 481 II 482
           +I
Sbjct: 179 VI 180


>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
          Length = 576

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 299/532 (56%), Gaps = 14/532 (2%)

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P  HL  +L++ C  N  +      F  M  +G+  DN      ++AC+   + H    I
Sbjct: 40  PSYHLL-SLLKQC-SNLKHLHQTHCF--MLSRGLDQDNILLSRFIEACSSLGFSHYSHSI 95

Query: 138 HALIYKCGYFGDIFVPNSLIDSYS--KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
               +      DI++ N++I + S  +     + L  ++  S    D  S   ++  +V+
Sbjct: 96  ----FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVR 151

Query: 196 GGELSEARRLFDEMPERDAVS----WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
              +   R++  +      VS       ++  Y+  G ++ A +LF+ +  R++  W+ M
Sbjct: 152 LLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAM 211

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V GY+K GD++ A+ LF+RMP + ++ WT +I+GYA+     EA  ++ +M+   ++PD+
Sbjct: 212 VAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDE 271

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
             +++ L+ACA  G L LG  +H  I+K+       + NAL+DMYAKCG ++ A+ VF  
Sbjct: 272 IAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKN 331

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  K +++W +M+ GLA+HG G +AL +FS M+     P++ TFV +L AC H G ++ G
Sbjct: 332 MEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMG 391

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
             YF  M   YGI P+++HYGCMIDLLGR+G L+EA  LV+ MP E NA IWG+LL A R
Sbjct: 392 RWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAAR 451

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H   EL ++ L  LI+++  + GNYT+LSNI+A    WN+   VR  M+ T  +K  G 
Sbjct: 452 IHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGG 511

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEG 603
           S +EV+N VHEF   D+LHP+SE+I++++  J    K   +  K   E+ E 
Sbjct: 512 SCIEVNNRVHEFVAGDKLHPQSERIFEVLCKJNLQSKIAMYVQKEHVEMLES 563



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 190/418 (45%), Gaps = 49/418 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI---KVFNDIQD 77
           L  L +C NL    Q    ++   L +D  +  + I +   C  +G +     +F     
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEA---CSSLGFSHYSHSIFTHKTR 101

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           PD++LYNT+I+A     L  +A  ++  +    +  D ++ PF+LKA       H+ + I
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQI 161

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H      G   DI V  +LI  YS CG   VS A++LF  +  RD+  WN+M+AG  K G
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGC--VSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----------- 246
           ++  AR LF+ MPER+ +SW  ++ GYA+    N A  +F ++    +            
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279

Query: 247 -----------SW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                       W                 + ++  Y+K G +E A  +F  M  K+++ 
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI- 337
           WT +I G A  G+ +EA  ++  ME   +KP++ T ++IL+AC   GL+ +G      + 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            KY  K        ++D+  + G L  A  +  GM  + +   W ++L    +HG  E
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 216/683 (31%), Positives = 337/683 (49%), Gaps = 112/683 (16%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI---SSLALCRQMGLAIKVFNDIQDPDV 80
           L  CK     KQL +Q I   L  DPY A +LI   S          ++++FN +++P+ 
Sbjct: 10  LQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNT 69

Query: 81  HLYNTLIRA--CVQNSLNAQ--AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             +NT++RA   +QNS +     +++FL    K    D++TYP LL+ C  +      + 
Sbjct: 70  FTWNTIMRAHLYLQNSPHQALLHYKLFLASHAK---PDSYTYPILLQCCAARVSEFEGRQ 126

Query: 137 IHA-------------------LIYKCGYFG------------DIFVPNSLIDSYSKCGV 165
           +HA                   L   CG  G            D+   N+L+  Y + G 
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGE 186

Query: 166 VG-----------------------------VSLAKKLFMSMG--ERDIVSWNSMIAGLV 194
           V                              V  A+++F  +   ERD+VSW++M++   
Sbjct: 187 VEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYE 246

Query: 195 KGGELSEARRLFDEMPE--------------------------------------RDAVS 216
           +     EA  LF EM                                         D VS
Sbjct: 247 QNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVEDYVS 306

Query: 217 W-NTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
             N ++  Y+  GE+  A  +F+      +++SW++M+ GY + G ++ A++LF  MP K
Sbjct: 307 LKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEK 366

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
            +V W+ +ISGYA+     EA  L+ +M+  G++PD+  L+S ++AC     L LG  +H
Sbjct: 367 DVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIH 426

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
           A I++ + + N  +   L+DMY KCG ++NA+ VF  M +K + +WNA++ GLAM+G  E
Sbjct: 427 AYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVE 486

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           ++L +F+ MK  G  P++ TF+GVL AC H G ++ G  YF SM  ++ I   ++HYGCM
Sbjct: 487 QSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCM 546

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +DLLGR+G LKEA  L+ SMP+ P+   WG LLGACRKH   E+ E +   LI+L+    
Sbjct: 547 VDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHD 606

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           G + +LSNI+A+ G+W  V  +R  M +    K  G S +E +  VHEF   D+ HP+  
Sbjct: 607 GFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQIN 666

Query: 575 QIYQMINTLGKDLKPVGHAAKLS 597
            I  M++ +   LK  G+    S
Sbjct: 667 DIEHMLDVVAAKLKIEGYVPTTS 689


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 197/565 (34%), Positives = 314/565 (55%), Gaps = 10/565 (1%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+ A ++K   +    +   LIS  +    +  A  VF+ ++  D   +N++I   V+N 
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNG 274

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
            + + F +F  MQ  GV   + T+  ++K+C       LV+++     K G+  D  V  
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           +L+ + SKC  +  +L+  LF  M E +++VSW +MI+G ++ G   +A  LF +M  R+
Sbjct: 335 ALMVALSKCKEMDDALS--LFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQM-RRE 391

Query: 214 AV-----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
            V     +++ IL  +       +  E+ +    R+    + ++  Y K G+   A  +F
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE-SGLL 327
           + + AK L+ W+ +++GYA+ G  +EAA+L+ Q+ + G+KP++ T  S++ ACA  +   
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G + HA   K R      V +ALV MYAK G++D+A  VF    ++DLVSWN+M+ G 
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           + HGQ +KAL +F  M+      D  TF+GV+ ACTHAG ++KG +YF SM  D+ I P 
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           ++HY CMIDL  R+G L++A+ ++  MP  P A +W TLLGA R H  VEL E   + LI
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLI 691

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L+  D   Y +LSN++AA G+W +  NVR  M K + +K  G S +EV N+ + F   D
Sbjct: 692 SLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGH 592
             HP S QIY  ++ L   LK  G+
Sbjct: 752 LTHPLSNQIYSKLSELSIRLKDAGY 776



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 136/509 (26%), Positives = 244/509 (47%), Gaps = 29/509 (5%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+  Q +K  L     +   L+        +    +VF+++ + +V  + +L+     N
Sbjct: 113 RQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWN 172

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            L    + +F  MQ +GV  + +T   ++ A   +    +   +HA++ K G+   I V 
Sbjct: 173 GLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVF 232

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           NSLI  YS+ G+  +  A+ +F  M  RD V+WNSMIAG V+ G+  E   +F++M    
Sbjct: 233 NSLISLYSRLGM--LRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAG 290

Query: 211 -ERDAVSWNTILDGYAKAGEMNLA-----FELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
            +   +++ +++   A   E+ L        L        IV  + MV   SK  +M+ A
Sbjct: 291 VKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMV-ALSKCKEMDDA 349

Query: 265 KLLFDRM-PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
             LF  M   K +V WT +ISG  + G   +A  L+ QM   G+KP+  T  +IL     
Sbjct: 350 LSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYP 409

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
             +     ++HA + K  ++ +++V  AL+D Y K G+  +A+ VF  +  KDL++W+AM
Sbjct: 410 VFV----SEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAM 465

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-THAGFIDKGVQYFYSMERDY 442
           L G A  G+ E+A  LF ++  EG  P+++TF  V+ AC +     ++G Q+       Y
Sbjct: 466 LAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF-----HAY 520

Query: 443 GILPQVEHYGC----MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            I  ++ +  C    ++ +  + G +  A  + +    E + + W +++    +H   + 
Sbjct: 521 AIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQHGQAKK 579

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           A EV D + + +  D    T +  I A T
Sbjct: 580 ALEVFDEMQK-RNMDVDAVTFIGVITACT 607



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 227/495 (45%), Gaps = 39/495 (7%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQDPDVHL--YNTLIRACVQNSLNAQAFRVFLDMQE 108
           I+ K IS+  LC    +A  +F+ I      L  +N L+ +  ++    +A  +F+ +  
Sbjct: 28  ISLKFISNTVLCVP-HIAHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLH 86

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
             +  D  T   +   C G     L + +H    K G    + V  SL+D Y K     V
Sbjct: 87  SSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTE--NV 144

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWNTILD 222
           +  +++F  MGER++VSW S++AG    G       LF +M      P R  VS  T++ 
Sbjct: 145 NDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVS--TVIA 202

Query: 223 GYAKAGEMNLAFELFEKIPHRN----IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                G + +  ++   +        I  +++++  YS+ G +  A+ +FD+M  +  V 
Sbjct: 203 ALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVT 262

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I+GY   G   E   ++++M+ AG+KP   T  S++ +CA    L L   +     
Sbjct: 263 WNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKAL 322

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKAL 397
           K  F  +  V  AL+   +KC  +D+A+S+F+ M + K++VSW AM+ G   +G  ++A+
Sbjct: 323 KSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAV 382

Query: 398 GLFSRMKDEGFGPDKYTFVGVLC-------ACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
            LFS+M+ EG  P+ +T+  +L        +  HA  I       Y      G       
Sbjct: 383 NLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVIKTN----YERSSSVGT------ 432

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
              ++D   + G   +A+++ + +  + + + W  +L    +    E A ++   LI+ +
Sbjct: 433 --ALLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAMLAGYAQTGETEEAAKLFHQLIK-E 488

Query: 511 GSDPGNYTMLSNIFA 525
           G  P  +T  S I A
Sbjct: 489 GIKPNEFTFSSVINA 503



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 21/209 (10%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q KQ  A  IK+ L     ++  L++  A    +  A +VF   ++ D+  +N++I    
Sbjct: 513 QGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYS 572

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKC 144
           Q+    +A  VF +MQ++ +  D  T+  ++ AC        G+ +F+ +   H +    
Sbjct: 573 QHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTM 632

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL-----VKGGEL 199
            ++      + +ID YS+ G++  ++     M       V W +++        V+ GEL
Sbjct: 633 KHY------SCMIDLYSRAGMLEKAMGIINEMPFPPGATV-WRTLLGAARVHRNVELGEL 685

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAG 228
           + A +L    PE D+ ++  + + YA AG
Sbjct: 686 A-AEKLISLQPE-DSAAYVLLSNMYAAAG 712


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 197/589 (33%), Positives = 318/589 (53%), Gaps = 36/589 (6%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND-IQDPDVHLYNTL 86
           KNL++ K++ + ++       P     LI+  + C QM  A+ +F+D   + +V  +N +
Sbjct: 51  KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAI 110

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   + N    + F  +  M+ +GV  D FT+P  +KAC        ++ IH L++K G 
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLD---VLEIKKIHGLLFKFGL 167

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE----LSEA 202
             D+F+ ++L++ Y K G++    A+  F  +  RD+V WN+M+ G  + G+    L   
Sbjct: 168 ELDVFIGSALVNCYLKFGLM--EHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETF 225

Query: 203 RRLFDE--MPERDAVSWNTILDGYAKAGEMN---LAFELFEKIPHRNIVSWS-TMVWGYS 256
           RR+ DE  +P R  V+   +L  +A  G++N   +      K+ + + V+ S +++  Y 
Sbjct: 226 RRMNDESVVPSRFTVT--GVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYG 283

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K   +E A  +F+ M  K +  W  I+S + + G      RL D+M  AG++PD  T+ +
Sbjct: 284 KCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 317 ILAACAESGLLGLGMKVHA------------SINKYRFKCNTNVCNALVDMYAKCGSLDN 364
           +L AC+    L  G ++H              I+    K      NA++DMYAKCGS+ +
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK------NAVIDMYAKCGSMRD 397

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  VF  M+ KD+ SWN M+ G  MHG G +AL +FSRM +    PD+ TFVGVL AC+H
Sbjct: 398 AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 457

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AGF+ +G  +   M+  Y + P +EHY C+ID+LGR+G+L EA  L  +MP+E N ++W 
Sbjct: 458 AGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWR 517

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL ACR H    LAE     +  L+    G+Y ++SN++ A G + +V  VR  M++  
Sbjct: 518 ALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQN 577

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            +K  G S +E+ N VH F   D+ HP++  IY  +N+L   L+  G+ 
Sbjct: 578 VRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREHGYV 626



 Score =  131 bits (330), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 169/380 (44%), Gaps = 18/380 (4%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C ++ + K++   + K  L+ D +I   L++       M  A   F ++   DV L+N +
Sbjct: 149 CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 208

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           +    Q          F  M ++ V    FT   +L         +  ++IH    K GY
Sbjct: 209 VNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGY 268

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
              + V NSLID Y KC  +  +L  ++F  M E+DI SWNS+++   + G+     RL 
Sbjct: 269 DSGVAVSNSLIDMYGKCKCIEDAL--EIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLL 326

Query: 207 DEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI----------PHRNIVSWSTMV 252
           D M     + D V+  T+L   +    +    E+   +             +++  + ++
Sbjct: 327 DRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVI 386

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G M  A L+F+RM  K +  W I+I GY   G   EA  ++ +M E  LKPD+ 
Sbjct: 387 DMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 446

Query: 313 TLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T + +L+AC+ +G +  G      + +KY           ++DM  + G LD A  +   
Sbjct: 447 TFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALT 506

Query: 372 M-TKKDLVSWNAMLYGLAMH 390
           M  + + V W A+L    +H
Sbjct: 507 MPIEANPVVWRALLAACRLH 526


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 315/573 (54%), Gaps = 12/573 (2%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L  ++ +   ++K     D Y+   ++     C ++  A  +F+ +   ++  +N 
Sbjct: 64  KLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNA 123

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    Q     + F +F+ M+  G   D  T   L +A         ++ +HA+  + G
Sbjct: 124 MIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETG 183

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEAR 203
              D  V N+ I +YSKCG   + LAK +F  + +  R  VSWNS+IA     G+  +A 
Sbjct: 184 LDADTSVSNTWIAAYSKCG--ELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAV 241

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGY 255
           + +  +     + DA +  ++L    +   +   F +    F+     +I   +T++  Y
Sbjct: 242 KSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMY 301

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           S+ GD+  A +LFD M  +T V WT +ISGY+E G   +A  L++ MEE G KPD  T++
Sbjct: 302 SRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVL 361

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+++ C ++G LGLG  +    + +  K +  VCNAL+DMYAKCGSL++A  +F  +  +
Sbjct: 362 SLISGCGKTGALGLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNR 421

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
            +VSW AM+   A++G+  +AL LFS + + G  P+  TF+ VL AC H G+++KG + F
Sbjct: 422 TVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECF 481

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   YGI P ++HY CMIDLLGR G+L EAL ++Q MP++P+  IWG LLGAC+ HN 
Sbjct: 482 MMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNN 541

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +E+ E V   L  L+     ++  ++NI+A+ G W++VA +R  M+  + +K  G S V+
Sbjct: 542 MEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPGKSVVQ 601

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           V+   H F V D+ H  S  IY+ +  L   +K
Sbjct: 602 VNGMSHVFFVEDRSHHDSLLIYEALGNLAMQMK 634



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/452 (28%), Positives = 224/452 (49%), Gaps = 21/452 (4%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N+ IR  V     ++A  +F  ++  G+  +NFT+PFL KAC   +     Q+IH  + 
Sbjct: 20  WNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQIIHTHVV 79

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K  ++ DI+V  +++D Y KCG   V  A  LF  M  R+I SWN+MI G  + G L   
Sbjct: 80  KSPFYSDIYVQTAMVDMYVKCG--KVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSLDRV 137

Query: 203 RRLFDEM----PERDAVSWNTILDGYAKAGEMNL-----AFELFEKIPHRNIVSWSTMVW 253
             LF  M       DA +   +      A  +       A  +   +     VS +T + 
Sbjct: 138 FNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGIETGLDADTSVS-NTWIA 196

Query: 254 GYSKDGDMEMAKLLFD--RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
            YSK G++++AK++F   +  A++ V W  +I+ YA  G   +A + Y  +   G KPD 
Sbjct: 197 AYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVDAVKSYKGLLCDGFKPDA 256

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVF 369
            T+IS+L++C +   L  G  +H   + ++  C++++   N L+ MY++CG + +A  +F
Sbjct: 257 STIISLLSSCQQPEALIYGFLIHG--HGFQLGCDSDISLINTLISMYSRCGDISSATILF 314

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           +GM+ +  VSW AM+ G +  G+ + AL LF+ M++ G  PD  T + ++  C   G + 
Sbjct: 315 DGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGALG 374

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G  +  +    + +   V     +ID+  + G L +A  +  S+P     + W  ++ A
Sbjct: 375 LG-HWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLP-NRTVVSWTAMIAA 432

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           C  +     A ++   L+   G +P N T L+
Sbjct: 433 CALNGEFREALDLFS-LLSESGIEPNNITFLA 463



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 108/221 (48%), Gaps = 3/221 (1%)

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
            TL  W   I G   +G A +A  L+ Q++  GL+P++ T   +  ACA+   L     +
Sbjct: 15  STLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSKACAKLSHLTNSQII 74

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  + K  F  +  V  A+VDMY KCG +D+A ++F+ M  +++ SWNAM+ G +  G  
Sbjct: 75  HTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIASWNAMIIGFSQIGSL 134

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++   LF  M+  G  PD  T +G+  A   A  + + ++  +++  + G+         
Sbjct: 135 DRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSL-RFLKAVHAIGIETGLDADTSVSNT 193

Query: 454 MIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKH 493
            I    + G L+ A  +   +     +++ W +L+ AC  H
Sbjct: 194 WIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLI-ACYAH 233


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 188/500 (37%), Positives = 268/500 (53%), Gaps = 41/500 (8%)

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I  CV++     A RVF  M+ K   T N     L+      +       +   I +
Sbjct: 65  NKIIARCVRSGDIDGALRVFHGMRAKNTITWN---SLLIGISKDPSRMMEAHQLFDEIPE 121

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                D F  N ++  Y +   V    A+  F  M  +D  SWN+MI G  + GE+ +AR
Sbjct: 122 ----PDTFSYNIMLSCYVRN--VNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKAR 175

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            LF  M E++ VSWN ++ GY + G++  A   F+  P R +V+W+ M+ GY K   +E+
Sbjct: 176 ELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVEL 235

Query: 264 AKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           A+ +F  M   K LV W  +ISGY E    ++  +L+  M E G++P+   L S L  C 
Sbjct: 236 AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGC- 294

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
                                       +L+ MY KCG L +A  +F  M KKD+V+WNA
Sbjct: 295 -------------------------TLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNA 329

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG  +KAL LF  M D    PD  TFV VL AC HAG ++ G+ YF SM RDY
Sbjct: 330 MISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDY 389

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            + PQ +HY CM+DLLGR+G+L+EAL+L++SMP  P+A ++GTLLGACR H  VELAE  
Sbjct: 390 KVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFA 449

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK-----KTRAQKPSGASSVEVD 557
            + L++L   +   Y  L+NI+A+   W  VA VR +MK     K    K  G S +E+ 
Sbjct: 450 AEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWIEIR 509

Query: 558 NEVHEFSVCDQLHPKSEQIY 577
           N+VH F   D++HP+ + I+
Sbjct: 510 NKVHHFRSSDRIHPELDSIH 529



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 163/355 (45%), Gaps = 87/355 (24%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           +M  A ++F++I +PD   YN ++   V+N +N +  + F D             PF   
Sbjct: 108 RMMEAHQLFDEIPEPDTFSYNIMLSCYVRN-VNFEKAQSFFDRM-----------PFK-- 153

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             +  +W                       N++I  Y++ G   +  A++LF SM E++ 
Sbjct: 154 --DAASW-----------------------NTMITGYARRG--EMEKARELFYSMMEKNE 186

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-H 242
           VSWN+MI+G ++ G+L +A   F   P R  V+W  ++ GY KA ++ LA  +F+ +  +
Sbjct: 187 VSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVN 246

Query: 243 RNIVSWSTMVWGYSKD-------------------------------------------- 258
           +N+V+W+ M+ GY ++                                            
Sbjct: 247 KNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSLISMYCKC 306

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G++  A  LF+ M  K +V W  +ISGYA+ G A +A  L+ +M +  ++PD  T +++L
Sbjct: 307 GELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVL 366

Query: 319 AACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            AC  +GL+ +GM    S +  Y+ +   +    +VD+  + G L+ A+ +   M
Sbjct: 367 LACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSM 421


>gi|297734691|emb|CBI16742.3| unnamed protein product [Vitis vinifera]
          Length = 674

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 200/610 (32%), Positives = 326/610 (53%), Gaps = 62/610 (10%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           K+  L +C N+   ++LF ++   D     Y A  +I++     ++  A K+F  + D  
Sbjct: 75  KISQLGRCGNVRGARKLFDEMPHHD--NVSYTA--MITAYLKNNELRKAEKLFQTMPDRT 130

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           +   + +I    +  L   A +VF  M    + T+ F++  L+       +F   Q+  A
Sbjct: 131 IVAESAMIDGYAKAGLMDSAQKVFDAM----IDTNVFSWTSLISG-----YFRDGQVAKA 181

Query: 140 LIYKCGYFGDIFVPN-----SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
               C  F  +   N     +++  Y++ G++    A+ +F  M E++ +SW +M+   V
Sbjct: 182 ----CQLFDQMPAKNVVSWTTMVLGYARNGLI--DQARSVFNQMPEKNTISWTAMMKSYV 235

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
             G   EA +LF EMP+R+  SWNT++ G      +N AF+LF  +P RN VSW+ MV G
Sbjct: 236 DNGRTDEALKLFHEMPQRNLYSWNTMISGCLDGKRVNEAFKLFHLMPLRNAVSWTIMVSG 295

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE---------- 304
            +++G  ++A+  FD+MP K +  W  +I+ Y ++ +  EA+ L++ M E          
Sbjct: 296 LARNGFTKLAREYFDQMPNKDIAAWNAMITAYVDECLIVEASELFNLMTERNIVTWNAMI 355

Query: 305 ---------------------AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
                                + ++P++ T+  IL +C   G+L L M+ HA       +
Sbjct: 356 DGYARHRPDGEAMKHLILMLRSCIRPNETTMTIILTSCW--GMLEL-MQAHALAIVVGCE 412

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
           C T++ NAL+ MY++ G + ++   F  +  KD+VSW AML     HG G+ AL +F  M
Sbjct: 413 CETSLSNALITMYSRIGDISSSRIAFESLKAKDVVSWTAMLLAFTYHGHGDHALHVFGHM 472

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
              G  PD+ TFVGVL AC+HAG + KG + F SM R YG+ P+ EHY C++D+LGR+G+
Sbjct: 473 LKSGTKPDEITFVGVLSACSHAGLVKKGQKLFDSMSRAYGLEPRAEHYSCLVDILGRAGQ 532

Query: 464 LKEALRLVQSMP-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
           + EA+ +V  MP  E +  + G LLGACR H  VE+A+ +   LI L+ +  G Y +L+N
Sbjct: 533 VHEAMDVVWKMPECERDGAVLGALLGACRLHGNVEMADYIGQKLIELQPNSSGGYVLLAN 592

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
           +FAA G+W++ A VR +MK    +K  G S +EV  + H F   D+ HP+ E+IY++   
Sbjct: 593 VFAARGNWDEFAEVRKKMKDRNVRKVPGFSQIEVKGKCHAFFAGDKSHPQVEEIYEL--- 649

Query: 583 LGKDLKPVGH 592
           L + L P+ H
Sbjct: 650 LREKLLPIMH 659



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 155/345 (44%), Gaps = 51/345 (14%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DI+  N  I    +CG   V  A+KLF  M   D VS+ +MI   +K  EL +A +LF  
Sbjct: 68  DIYNCNIKISQLGRCG--NVRGARKLFDEMPHHDNVSYTAMITAYLKNNELRKAEKLFQT 125

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MP+R  V+ + ++DGYAKAG M+ A ++F+ +   N+ SW++++ GY +DG +  A  LF
Sbjct: 126 MPDRTIVAESAMIDGYAKAGLMDSAQKVFDAMIDTNVFSWTSLISGYFRDGQVAKACQLF 185

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D+MPAK +V WT ++ GYA  G+  +A  +++QM E                        
Sbjct: 186 DQMPAKNVVSWTTMVLGYARNGLIDQARSVFNQMPEK----------------------- 222

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
                           NT    A++  Y   G  D A+ +F+ M +++L SWN M+ G  
Sbjct: 223 ----------------NTISWTAMMKSYVDNGRTDEALKLFHEMPQRNLYSWNTMISGCL 266

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
              +  +A  LF  M       +  ++  ++      GF     +YF  M         +
Sbjct: 267 DGKRVNEAFKLFHLMPLR----NAVSWTIMVSGLARNGFTKLAREYFDQMPNK-----DI 317

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             +  MI        + EA  L   M  E N + W  ++    +H
Sbjct: 318 AAWNAMITAYVDECLIVEASELFNLM-TERNIVTWNAMIDGYARH 361


>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
           [Vitis vinifera]
          Length = 576

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 186/532 (34%), Positives = 299/532 (56%), Gaps = 14/532 (2%)

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P  HL  +L++ C  N  +      F  M  +G+  DN      ++AC+   + H    I
Sbjct: 40  PSYHLL-SLLKQC-SNLKHLHQTHCF--MLSRGLDQDNILLSRFIEACSSLGFSHYSHSI 95

Query: 138 HALIYKCGYFGDIFVPNSLIDSYS--KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
               +      DI++ N++I + S  +     + L  ++  S    D  S   ++  +V+
Sbjct: 96  ----FTHKTRPDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVR 151

Query: 196 GGELSEARRLFDEMPERDAVS----WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
              +   R++  +      VS       ++  Y+  G ++ A +LF+ +  R++  W+ M
Sbjct: 152 LLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQLFDGVCFRDVAFWNAM 211

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V GY+K GD++ A+ LF+RMP + ++ WT +I+GYA+     EA  ++ +M+   ++PD+
Sbjct: 212 VAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDE 271

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
             +++ L+ACA  G L LG  +H  I+K+       + NAL+DMYAKCG ++ A+ VF  
Sbjct: 272 IAMLAALSACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKN 331

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  K +++W +M+ GLA+HG G +AL +FS M+     P++ TFV +L AC H G ++ G
Sbjct: 332 MEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMG 391

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
             YF  M   YGI P+++HYGCMIDLLGR+G L+EA  LV+ MP E NA IWG+LL A R
Sbjct: 392 RWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAAR 451

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H   EL ++ L  LI+++  + GNYT+LSNI+A    WN+   VR  M+ T  +K  G 
Sbjct: 452 IHGDAELGKQALQHLIKVEPHNSGNYTLLSNIYATQSKWNEAGMVRKVMRDTGVKKMPGG 511

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEG 603
           S +EV+N VHEF   D+LHP+SE+I++++  +    K   +  K   E+ E 
Sbjct: 512 SCIEVNNRVHEFVAGDKLHPQSERIFEVLCKINLQSKIAMYVQKEHVEMLES 563



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 190/418 (45%), Gaps = 49/418 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI---KVFNDIQD 77
           L  L +C NL    Q    ++   L +D  +  + I +   C  +G +     +F     
Sbjct: 45  LSLLKQCSNLKHLHQTHCFMLSRGLDQDNILLSRFIEA---CSSLGFSHYSHSIFTHKTR 101

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           PD++LYNT+I+A     L  +A  ++  +    +  D ++ PF+LKA       H+ + I
Sbjct: 102 PDIYLYNTIIKALSNPELATEAILLYNRILASDLRFDTYSLPFVLKAVVRLLAIHVGRQI 161

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H      G   DI V  +LI  YS CG   VS A++LF  +  RD+  WN+M+AG  K G
Sbjct: 162 HCQAIGTGLVSDIHVVTALIQMYSSCGC--VSEARQLFDGVCFRDVAFWNAMVAGYAKVG 219

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----------- 246
           ++  AR LF+ MPER+ +SW  ++ GYA+    N A  +F ++    +            
Sbjct: 220 DVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAITMFRRMQLEEVEPDEIAMLAALS 279

Query: 247 -----------SW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                       W                 + ++  Y+K G +E A  +F  M  K+++ 
Sbjct: 280 ACAHLGALELGEWIHNYIDKHGLSKIVPLNNALIDMYAKCGKIEKALEVFKNMEHKSVIT 339

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI- 337
           WT +I G A  G+ +EA  ++  ME   +KP++ T ++IL+AC   GL+ +G      + 
Sbjct: 340 WTSMIDGLALHGLGREALEMFSCMERNRIKPNEITFVAILSACCHVGLVEMGRWYFKCMG 399

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            KY  K        ++D+  + G L  A  +  GM  + +   W ++L    +HG  E
Sbjct: 400 TKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVRGMPFEANAPIWGSLLAAARIHGDAE 457


>gi|147828480|emb|CAN64316.1| hypothetical protein VITISV_027915 [Vitis vinifera]
          Length = 841

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 191/548 (34%), Positives = 310/548 (56%), Gaps = 42/548 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQR-DPYIAPK-LISSLALCRQMGLAI-KVFNDIQDPDVHLYNT 85
           ++ Q KQ+ A I+   L   +P +A + LJS+      +   +  V +  + PD   +  
Sbjct: 12  SVKQAKQVHALILIHGLSHLEPILARQILJSASNYSATVAQYVHSVLHHSKSPDSFSWAC 71

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
            IR   Q+    +AF +++ MQ  G++   F     LKAC    +      IH  + K G
Sbjct: 72  AIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIAYRMGGLSIHGQVQKFG 131

Query: 146 YFGD---IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER--------------------- 181
           + G    I+V  +L+D Y K G   + +A+K+F  M ER                     
Sbjct: 132 FSGGGDGIYVETALVDFYCKLG--DMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 189

Query: 182 ----------DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
                     D++SWNSMI+G  + G++ +A  LF +MPER+  SWN ++ GY + G+++
Sbjct: 190 QRVFDEIPQKDVISWNSMISGYARAGDMEKALSLFQQMPERNFASWNAMISGYVEFGDID 249

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
            A   F+ +P  N VSW TM+ GYSK GD++ A  LFD++  K L+ +  +I+ YA+   
Sbjct: 250 SARSFFDAMPQXNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 309

Query: 292 AKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
            KEA +L++ M   +  ++PD+ TL S+++AC++ G L  G  + + + +   + + ++ 
Sbjct: 310 PKEALKLFNNMLNPDVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 369

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            AL+D+YAKCGS+D A  +F+G+ KKDLV++ AM+ G  ++G+   A+ LF  M D    
Sbjct: 370 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 429

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  TF+G+L A  HAG +++G + F SM++ Y ++P V+HYG M+DLLGR+GRL+EAL 
Sbjct: 430 PNLITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLLGRAGRLQEALE 488

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           L++SMP++P+A +WG LL ACR HN VE  E        L+    G  ++LSNI+A+   
Sbjct: 489 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYXSLLSNIYASGER 548

Query: 530 WNKVANVR 537
           W+ V  +R
Sbjct: 549 WDDVKRLR 556



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 14/182 (7%)

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           SV +     D  SW   +     HGQ ++A  L+ +M+  G  P  +     L AC    
Sbjct: 56  SVLHHSKSPDSFSWACAIRFSTQHGQFKEAFALYVQMQRWGLWPTTFALSSALKACARIA 115

Query: 427 F------IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           +      I   VQ F       GI  +      ++D   + G ++ A ++   M  E N 
Sbjct: 116 YRMGGLSIHGQVQKFGFSGGGDGIYVET----ALVDFYCKLGDMEIARKMFDEM-AERNV 170

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
           + W ++L    K   + +A+ V D    +   D  ++  + + +A  GD  K  ++  QM
Sbjct: 171 VSWNSMLAGYLKSGDLVVAQRVFD---EIPQKDVISWNSMISGYARAGDMEKALSLFQQM 227

Query: 541 KK 542
            +
Sbjct: 228 PE 229


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 189/604 (31%), Positives = 326/604 (53%), Gaps = 43/604 (7%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+   IIK+D  +D ++   L+   A C ++  A KVF+++ + +V  + ++I    +  
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARRE 213

Query: 95  LNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               A  +F  M +++ V  ++ T   ++ AC         + ++  I   G   +  + 
Sbjct: 214 FAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMI 273

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           ++L+D Y KC    + +AK+LF   G  ++   N+M +  V+ G   EA  + + M    
Sbjct: 274 SALVDMYMKCN--AIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSG 331

Query: 210 --PERDAV-----------------------------SW----NTILDGYAKAGEMNLAF 234
             P+R ++                             SW    N ++D Y K    + AF
Sbjct: 332 IRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 391

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            +F+++ ++ +V+W+++V GY ++G+++ A   F+ MP K +V W  IIS   ++ M +E
Sbjct: 392 RIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEE 451

Query: 295 AARLYDQMEEAGLKPDDG-TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           A  ++  M+       DG T++SI +AC   G L L   ++  I K R + +  +   LV
Sbjct: 452 AIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLV 511

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DM+++CG  ++AMS+FN +T +D+ +W A +  +AM G  E+A+ LF+ M ++G  PD  
Sbjct: 512 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGV 571

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
            F+G L AC H G + +G + F SME+ +G+ P+  HYGCM+DLLGR+G L+EAL+L++ 
Sbjct: 572 VFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKD 631

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
           MP EPN +IW +LL ACR    VE+A    + +  L     G+Y +LSN++A+ G WN +
Sbjct: 632 MPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 691

Query: 534 ANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           A VRL MK+   +KP G S +++  + HEF+  D+ HP+  +I  M++ L +    +GH 
Sbjct: 692 AKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHV 751

Query: 594 AKLS 597
             LS
Sbjct: 752 PDLS 755



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 147/587 (25%), Positives = 262/587 (44%), Gaps = 84/587 (14%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---SLALCRQ 64
           P+  ++ +  +    +L  CK +++ K     + K  L  D     KL++    L     
Sbjct: 22  PSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLVARSCELGTRES 81

Query: 65  MGLAIKVFNDIQD-PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
           +  A +VF + +      +YN+LIR    + L  +A  +F+ M   G+  D +T+PF L 
Sbjct: 82  LSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLS 141

Query: 124 AC-NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            C   ++  + +Q IH LI K  Y  D+FV NSL+  Y++CG   +  A+K+F  M ER+
Sbjct: 142 VCAKSRDKGNGIQ-IHGLIIKMDYAKDLFVQNSLVHFYAECG--ELDCARKVFDEMSERN 198

Query: 183 IVSWNSMIAGLVKGGELSEARRLF-----DEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           +VSW SMI G  +     +A  LF     DE    ++V+   ++   AK  ++    +++
Sbjct: 199 VVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVY 258

Query: 238 EKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
           + I    I    +  S +V  Y K   +++AK LFD   A  L     + S Y  +G+ K
Sbjct: 259 DFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTK 318

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA  + + M ++G++PD  +++S +++C++   +  G   H  + +  F+   N+CNAL+
Sbjct: 319 EALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALI 378

Query: 354 DMYAKC-------------------------------GSLDNAMSVFNGMTKKDLVSWNA 382
           DMY KC                               G +D A   FN M +K++VSWN 
Sbjct: 379 DMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNT 438

Query: 383 MLYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           ++  L      E+A+ +F  M+  E    D  T + +  AC H G +D     +Y +E++
Sbjct: 439 IISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKN 498

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-------------------------- 475
             I   V     ++D+  R G  + A+ +  S+                           
Sbjct: 499 R-IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIEL 557

Query: 476 --------VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
                   ++P+ +++   L AC     V+  +E+ + + +L G  P
Sbjct: 558 FNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSP 604



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 16/201 (7%)

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCG---SLDNAMSVF-NGMTKKDLVSWNAMLYGLAM 389
           H S+ K     + +    LV    + G   SL  A  VF NG +      +N+++ G A 
Sbjct: 51  HLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYAS 110

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQV 448
            G  ++A+ LF RM + G  PDKYTF   L  C  +     G+Q +   ++ DY     V
Sbjct: 111 SGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFV 170

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHNAVELAEEVLDCLI 507
           ++   ++      G L  A ++   M  E N + W +++ G  R+    E A++ +D   
Sbjct: 171 QN--SLVHFYAECGELDCARKVFDEMS-ERNVVSWTSMICGYARR----EFAKDAVDLFF 223

Query: 508 RLKGSD---PGNYTMLSNIFA 525
           R+   +   P + TM+  I A
Sbjct: 224 RMVRDEDVIPNSVTMVCVISA 244



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 19/213 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  K ++  I K  +Q D  +   L+   + C     A+ +FN + + DV  +   I A
Sbjct: 485 LDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGA 544

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALIY 142
                   +A  +F +M E+G+  D   +   L AC        GK  F+ ++ +H +  
Sbjct: 545 MAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSP 604

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  ++G       ++D   + G++  +L     M     D++ WNS++A     G +  A
Sbjct: 605 EDVHYG------CMVDLLGRAGLLEEALQLIKDMPTEPNDVI-WNSLLAACRVQGNVEMA 657

Query: 203 RRLFDEM----PERDAVSWNTILDGYAKAGEMN 231
               +++    PER   S+  + + YA AG  N
Sbjct: 658 AFAAEKIQVLAPERTG-SYVLLSNVYASAGRWN 689


>gi|225428117|ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 185/527 (35%), Positives = 301/527 (57%), Gaps = 26/527 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD      +IS      +M  A+++F+ +Q+ +V  +N ++   +QN    +A   F+ 
Sbjct: 159 ERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMR 218

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD----IFVPNSLIDSYS 161
           M E+   + +     L++  NG+    L +    L+       D    +   N L+  Y 
Sbjct: 219 MPERDSASLSALVAGLIQ--NGE----LDEAKRILLTSRRQDDDKGDLVHAYNILLAGYG 272

Query: 162 KCGVVGVSLAKKLFMSMG------------ERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + G   V  A++LF  +             ER++VSWNSMI   VK  ++  AR LFD+M
Sbjct: 273 QNG--RVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQM 330

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
            ERD +SWNT++ GY +  +M  A+ LF+++P+ + ++W++M+ G+++ G++E+A+ LF 
Sbjct: 331 KERDTISWNTMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFA 390

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            +P K LV W  +I+GY   G  K A  LY QM   G KPD  TL S+L+ C+    L L
Sbjct: 391 TIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHL 450

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLA 388
           GM++H  I K     +  + N+L+ MY++CG++  A ++F+ +  +K+++SWNAM+ G A
Sbjct: 451 GMQIHQQITKTVIP-DIPINNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYA 509

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG    AL LF  MK     P   TF+ VL AC HAGF+ +G  +F SM  ++GI P++
Sbjct: 510 FHGFAADALELFELMKRLKVRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRI 569

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EH+  ++D++GR G+L+EA+ L+ SMP EP+  +WG LLGACR HN VELA    + L++
Sbjct: 570 EHFASLVDIVGRHGQLEEAMDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMK 629

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           L+      Y +L N++A  G W+    +R+ M++   +K  G S V+
Sbjct: 630 LEPESSAPYVLLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSWVD 676



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 184/373 (49%), Gaps = 34/373 (9%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV--KGGELSEARRLF 206
           +I   NS+I  Y +     ++ A+KLF  M +RD+VSWN MI+G V  +G  + E R LF
Sbjct: 97  NIVTWNSMITGYVRRR--EMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLF 154

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           DEMPERD VSWNT++ GY ++G M+ A +LF+ +  RN+VSW+ MV G+ ++GD+E A  
Sbjct: 155 DEMPERDCVSWNTMISGYTRSGRMDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIE 214

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS----ILAACA 322
            F RMP +     + +++G  + G   EA R+   +       D G L+     +LA   
Sbjct: 215 FFMRMPERDSASLSALVAGLIQNGELDEAKRIL--LTSRRQDDDKGDLVHAYNILLAGYG 272

Query: 323 ESGLLGLGMKVHASINKY--------RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           ++G +    ++   I  Y        RF+ N    N+++  Y K   + +A  +F+ M +
Sbjct: 273 QNGRVDKARQLFDQIPFYDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKE 332

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D +SWN M+ G       E+A  LF  M +    PD  T+  ++      G ++     
Sbjct: 333 RDTISWNTMISGYVRMSDMEEAWMLFQEMPN----PDTLTWNSMISGFAQKGNLELARAL 388

Query: 435 FYSMERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGA 489
           F         +PQ  +  +  MI     +G  K A  L + M ++   P+     ++L  
Sbjct: 389 F-------ATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPDRHTLSSVLSV 441

Query: 490 CRKHNAVELAEEV 502
           C    A+ L  ++
Sbjct: 442 CSGFAALHLGMQI 454



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 179/390 (45%), Gaps = 54/390 (13%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D+ + N  I+ L++ G ++EAR LFD MP+R+ V+WN+++ GY +  EM  A +LF+++P
Sbjct: 66  DLYTPNKRISHLIRNGRINEARALFDAMPQRNIVTWNSMITGYVRRREMAKARKLFDEMP 125

Query: 242 HRNIVSWSTMVWGY-SKDGD-MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            R++VSW+ M+ GY S  G  +E  + LFD MP +  V W  +ISGY   G   EA +L+
Sbjct: 126 DRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLF 185

Query: 300 DQMEEAGL---------------------------KPDDGTLISILAACAESGLLGLGMK 332
           D M+E  +                           + D  +L +++A   ++G L    +
Sbjct: 186 DSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKR 245

Query: 333 VHASINKYRFKCN--TNVCNALVDMYAKCGSLDNAMSVFN------------GMTKKDLV 378
           +  +  +         +  N L+  Y + G +D A  +F+            G  ++++V
Sbjct: 246 ILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLFDQIPFYDGGQKDGGRFERNVV 305

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWN+M+           A  LF +MK+     D  ++  ++        +++    F  M
Sbjct: 306 SWNSMIMCYVKARDIFSARVLFDQMKER----DTISWNTMISGYVRMSDMEEAWMLFQEM 361

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
                  P    +  MI    + G L+ A  L  ++P + N + W +++     +   + 
Sbjct: 362 PN-----PDTLTWNSMISGFAQKGNLELARALFATIP-QKNLVSWNSMIAGYENNGDYKG 415

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           A E+   ++ L+G  P  +T+ S +   +G
Sbjct: 416 ATELYRQML-LQGEKPDRHTLSSVLSVCSG 444


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 311/577 (53%), Gaps = 12/577 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           KNL Q + + + IIK   + + +I   L+   + C     AI VF  I+ PD+ +++ LI
Sbjct: 328 KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI 387

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               Q   + ++ ++F  M+      + +T   LL A          Q IHA ++K G+ 
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+ V N+L+  Y K G V      KL+ SM +RD++SWN+ ++GL   G       +F 
Sbjct: 448 TDVAVSNALVTMYMKNGCV--HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 208 EMPERDAV----SWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
            M E   +    ++ +IL   +       G    A  +  ++   N V  + ++  Y+K 
Sbjct: 506 HMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMYAKC 564

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +E A + F+R+  + L  WT+II+ YA+    ++A   + QM++ G+KP++ TL   L
Sbjct: 565 MYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCL 624

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           + C+    L  G ++H+ + K     +  V +ALVDMYAKCG ++ A ++F  + ++D +
Sbjct: 625 SGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTI 684

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +WN ++ G A +GQG KAL  F  M DEG  PD  TF G+L AC+H G +++G ++F SM
Sbjct: 685 AWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSM 744

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            RD+GI P V+H  CM+D+LGR G+  E    +Q M +  NA+IW T+LGA + HN + L
Sbjct: 745 YRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVL 804

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E+  + L  L+  +  +Y +LSNIFA  G W+ V  VR  M     +K  G S VE + 
Sbjct: 805 GEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANG 864

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           +VH F   D  HP+ ++I+  ++ L ++L  + +  K
Sbjct: 865 QVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPK 901



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 234/471 (49%), Gaps = 16/471 (3%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  L+  KQ+ AQ  KL L  D ++   L+   A C ++ LA K+F  + + +   +N L
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVL 285

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           +    Q        ++F  M E  V  + FT   +LK C         Q+IH+LI KCGY
Sbjct: 286 LNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY 345

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
            G+ F+   L+D YSKCG+   ++   +F ++ + DIV W+++I  L + G+  E+ +LF
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIG--VFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 207 ------DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYS 256
                 D +P +  +   ++L      G +     +   +       ++   + +V  Y 
Sbjct: 404 HLMRLGDTLPNQYTIC--SLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYM 461

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K+G +     L++ M  + L+ W   +SG  + GM      ++  M E G  P+  T IS
Sbjct: 462 KNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFIS 521

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           IL +C+    +  G +VHA I K +   N  VC AL+DMYAKC  L++A   FN ++ +D
Sbjct: 522 ILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD 581

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L +W  ++   A   QGEKAL  F +M+ EG  P+++T  G L  C+    ++ G Q  +
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG-QQLH 640

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           SM    G +  +     ++D+  + G ++EA  L +++ +  + I W T++
Sbjct: 641 SMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII 690



 Score =  194 bits (492), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 215/424 (50%), Gaps = 12/424 (2%)

Query: 10  WFSKRRL--LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           W SK++L      L+     ++L   K +   I+K  +  D ++   L++  A CR    
Sbjct: 106 WSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAY 165

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  V   + D DV  +  LI+  V       +  +F +MQ +G+  + FT    LKAC+ 
Sbjct: 166 ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSL 225

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L + +HA  +K G   D+FV ++L+D Y+KCG   + LA K+F+ M E++ V+WN
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG--EIELASKMFIGMPEQNDVTWN 283

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDA----VSWNTILDGYAKAGEM---NLAFELFEKI 240
            ++ G  + G+++   +LF  M E D      +  T+L G A +  +    +   L  K 
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 241 PHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            +  N      +V  YSK G    A  +F  +    +V W+ +I+   ++G ++E+ +L+
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M      P+  T+ S+L+A   +G L  G  +HA + KY F+ +  V NALV MY K 
Sbjct: 404 HLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN 463

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G + +   ++  M  +DL+SWNA L GL   G  ++ L +F  M +EGF P+ YTF+ +L
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISIL 523

Query: 420 CACT 423
            +C+
Sbjct: 524 GSCS 527



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS-----LIDSYSKCGVVGVSLAK 172
           Y  +L+ C  K    + + IH LI K     D+  P+S     L++ Y+KC     + A+
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVK-----DVINPDSHLWVSLVNVYAKCRYS--AYAR 167

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
            +   M +RD+VSW ++I GLV  G  +++  LF EM     +     L    KA  + +
Sbjct: 168 LVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCM 227

Query: 233 AFELFEKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
           A +L +++  +        ++   S +V  Y+K G++E+A  +F  MP +  V W ++++
Sbjct: 228 ALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLN 287

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GYA++G      +L+  M E  +K ++ TL ++L  CA S  L  G  +H+ I K  ++ 
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEG 347

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           N  +   LVDMY+KCG   +A+ VF  + K D+V W+A++  L   GQ E+++ LF  M+
Sbjct: 348 NEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMR 407

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
                P++YT   +L A T+ G +  G Q  ++    YG    V     ++ +  ++G +
Sbjct: 408 LGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCV 466

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGA 489
            +  +L +SM V+ + I W   L  
Sbjct: 467 HDGTKLYESM-VDRDLISWNAYLSG 490


>gi|255586679|ref|XP_002533966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526049|gb|EEF28413.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 515

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/427 (41%), Positives = 262/427 (61%), Gaps = 4/427 (0%)

Query: 14  RRLLEEKLQNL-HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
            RLLEEK+ +L + CK LN   Q+ + II   LQ + YI PK+I+S AL ++M  A K+F
Sbjct: 62  HRLLEEKIISLLYSCKTLNHLHQIQSHIINHGLQFNDYITPKIITSFALFKRMRHAHKLF 121

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + I +P+V  +N +++    N  + +   +F  M    +  + F++P ++K+    N F 
Sbjct: 122 DQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDILPNCFSFPIVIKSSVKINAFK 181

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
             + +H  + K G   + FV   LID YS  G + VS A ++F  M ER++V+W SMI G
Sbjct: 182 EGEELHCFVIKSGCRANPFVGTMLIDLYSS-GRMIVS-AYRVFGEMIERNVVAWTSMIKG 239

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
            +   ++  ARRLF+  P+RD V WN ++ GY   G++  A ELF K+P+++++SW+T++
Sbjct: 240 FILCNDIETARRLFELAPQRDVVLWNIMISGYIDIGDLVRAQELFHKMPNKDVMSWNTLL 299

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL-KPDD 311
            GY+  GD+E  + LF+ MP + +  W  +I GYA  G   E    + +M   G+  P+D
Sbjct: 300 NGYANGGDIEACERLFEEMPERNVFSWNGLIGGYAHHGCFLEVLSSFKRMLVDGIVVPND 359

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL+++L+ACA  G L LG  VH       +K N  + NAL+DMYAKCG+++NA+ VF  
Sbjct: 360 ATLVTVLSACARLGALDLGKWVHMYAQSNGYKGNVYIGNALIDMYAKCGNVENAIVVFKS 419

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           + KKDL+SWN ++ GLA+HG+   AL LFSRMKD G  PD  TF+GVLCACTH G +D G
Sbjct: 420 LDKKDLISWNTLIGGLAVHGRAADALYLFSRMKDAGEKPDGITFLGVLCACTHMGLVDDG 479

Query: 432 VQYFYSM 438
             YF SM
Sbjct: 480 FSYFQSM 486



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 98/217 (45%), Gaps = 10/217 (4%)

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
           K +AK A+ L  ++    L+     +IS+L +C     L    ++ + I  +  + N  +
Sbjct: 47  KKVAKFASTLSPKLPHRLLEEK---IISLLYSCKTLNHL---HQIQSHIINHGLQFNDYI 100

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
              ++  +A    + +A  +F+ + + ++ +WNAML G +++    + + LF +M     
Sbjct: 101 TPKIITSFALFKRMRHAHKLFDQIPEPNVSNWNAMLKGYSLNDSHREVIVLFRKMISMDI 160

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
            P+ ++F  V+ +        +G + + + ++      P V   G M+  L  SGR+  +
Sbjct: 161 LPNCFSFPIVIKSSVKINAFKEGEELHCFVIKSGCRANPFV---GTMLIDLYSSGRMIVS 217

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
              V    +E N + W +++      N +E A  + +
Sbjct: 218 AYRVFGEMIERNVVAWTSMIKGFILCNDIETARRLFE 254


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 188/576 (32%), Positives = 285/576 (49%), Gaps = 79/576 (13%)

Query: 61  LCRQMGL--AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTY 118
            C+Q  L  A+   + I  P   LY+TLI AC+++                         
Sbjct: 42  FCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRK----------------------- 78

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
                         L + +HA      +   I + N LI  Y+KCG   +  A+ LF  +
Sbjct: 79  ------------LELGKRVHAHTKASNFIPGIVISNRLIHMYAKCG--SLVDAQMLFDEI 124

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE 238
            ++D+ SWN+MI+G    G + +AR+LFDEMP RD  SWN ++ GY   G    A +LF 
Sbjct: 125 PQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFR 184

Query: 239 KIPHR----------------------------------------NIVSWSTMVWGYSKD 258
            +                                           + V W+ ++  Y K 
Sbjct: 185 MMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKC 244

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +  A+ +FD+M  K +V WT +I    E G  KE   L+  +  +G++P++ T   +L
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA+     +G +VH  + +  +   +   +ALV +Y+KCG+ + A  VFN M + DLV
Sbjct: 305 NACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLV 364

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW +++ G A +GQ + AL  F  +   G  PD+ TFVGVL ACTHAG +D G++YF+S+
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSV 424

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           +  +G++   +HY C+IDLL RSGR KEA  ++ +MP++P+  +W +LLG CR H  +EL
Sbjct: 425 KEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIEL 484

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE     L  L+  +P  Y  LSNI+A  G W +   VR  M      K  G S +E+  
Sbjct: 485 AERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKR 544

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           +VH F V D  HPK   I++ +  L K +K  G+ A
Sbjct: 545 QVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVA 580



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 178/397 (44%), Gaps = 62/397 (15%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
           I+ +LI   A C  +  A  +F++I   D+  +NT+I          QA ++F +M  + 
Sbjct: 100 ISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHR- 158

Query: 111 VFTDNFTYPFLLKACNGKNW-------FHLVQ---------------------------- 135
              DNF++  ++     + W       F ++Q                            
Sbjct: 159 ---DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRG 215

Query: 136 -MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             IH  + + G   D  V  +L+D Y KCG   ++ A+ +F  M ++DIVSW +MI    
Sbjct: 216 KEIHGYLIRSGLELDEVVWTALLDLYGKCG--SLNEARGIFDQMADKDIVSWTTMIHRCF 273

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIV---- 246
           + G   E   LF     RD +      + Y  AG +N    LA E   K  H  +     
Sbjct: 274 EDGRKKEGFSLF-----RDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGY 328

Query: 247 -----SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
                + S +V  YSK G+ E A+ +F++MP   LV WT +I GYA+ G    A + ++ 
Sbjct: 329 DPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFES 388

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCG 360
           +  +G KPD+ T + +L+AC  +GL+ +G++  H+   K+      +    ++D+ A+ G
Sbjct: 389 LLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSG 448

Query: 361 SLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA 396
               A ++ + M  K D   W ++L G  +HG  E A
Sbjct: 449 RFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELA 485



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/398 (22%), Positives = 163/398 (40%), Gaps = 52/398 (13%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++   +I+  L+ D  +   L+     C  +  A  +F+ + D D+  + T+I  C ++
Sbjct: 216 KEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFED 275

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               + F +F D+   GV  + +T+  +L AC       + + +H  + + GY    F  
Sbjct: 276 GRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAA 335

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
           ++L+  YSKCG      A+++F  M   D+VSW S+I G  + G+   A + F+ +    
Sbjct: 336 SALVHVYSKCG--NTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSG 393

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
            + D +++  +L     AG +++  E F  +  ++ +                       
Sbjct: 394 TKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGL----------------------- 430

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
                T   +  +I   A  G  KEA  + D M    +KPD     S+L  C   G + L
Sbjct: 431 ---VHTADHYACVIDLLARSGRFKEAENIIDNMP---MKPDKFLWASLLGGCRIHGNIEL 484

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV-----SW---- 380
             +   ++ +   + N      L ++YA  G       V N M  + +V     SW    
Sbjct: 485 AERAAKALFELEPE-NPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIK 543

Query: 381 ---NAMLYGLAMH---GQGEKALGLFS-RMKDEGFGPD 411
              +  L G   H       + LG  S +MK+EG+  D
Sbjct: 544 RQVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVAD 581



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 80/382 (20%), Positives = 150/382 (39%), Gaps = 78/382 (20%)

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           +  I++ + +   +  A +   +IP  +   +ST++    +   +E+ K +     A   
Sbjct: 35  FEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNF 94

Query: 277 VP-----------------------------------WTIIISGYAEKGMAKEAARLYDQ 301
           +P                                   W  +ISGYA  G  ++A +L+D+
Sbjct: 95  IPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDE 154

Query: 302 MEEAGLKPDDGTLISILAACAESG----LLGL---------------------------- 329
           M       D+ +  ++++     G     L L                            
Sbjct: 155 MPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAIS 210

Query: 330 ----GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
               G ++H  + +   + +  V  AL+D+Y KCGSL+ A  +F+ M  KD+VSW  M++
Sbjct: 211 SLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIH 270

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
                G+ ++   LF  +   G  P++YTF GVL AC        G +    M R  G  
Sbjct: 271 RCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTR-VGYD 329

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P       ++ +  + G  + A R+   MP  P+ + W +L+    ++   ++A +  + 
Sbjct: 330 PFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQPDMALQFFES 388

Query: 506 LIRLKGSDPGNYTMLSNIFAAT 527
           L+R  G+ P   T +  + A T
Sbjct: 389 LLR-SGTKPDEITFVGVLSACT 409



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 117/287 (40%), Gaps = 54/287 (18%)

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           II  + ++   KEA     ++ +    P      +++AAC     L LG +VHA      
Sbjct: 38  IIELFCQQNRLKEAVDYLHRIPQ----PSPRLYSTLIAACLRHRKLELGKRVHAHTKASN 93

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
           F     + N L+ MYAKCGSL +A  +F+ + +KDL SWN M+ G A  G+ E+A  LF 
Sbjct: 94  FIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFD 153

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-------------------- 441
            M       D +++  V+      G+  + +  F  M+ +                    
Sbjct: 154 EMPHR----DNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAI 209

Query: 442 -----------YGILPQVEH----YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
                      Y I   +E     +  ++DL G+ G L EA  +   M  + + + W T+
Sbjct: 210 SSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQM-ADKDIVSWTTM 268

Query: 487 LGAC----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           +  C    RK     L  +++   +R     P  YT  + +  A  D
Sbjct: 269 IHRCFEDGRKKEGFSLFRDLMGSGVR-----PNEYT-FAGVLNACAD 309


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 190/577 (32%), Positives = 311/577 (53%), Gaps = 12/577 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           KNL Q + + + IIK   + + +I   L+   + C     AI VF  I+ PD+ +++ LI
Sbjct: 328 KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALI 387

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               Q   + ++ ++F  M+      + +T   LL A          Q IHA ++K G+ 
Sbjct: 388 TCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFE 447

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+ V N+L+  Y K G V      KL+ SM +RD++SWN+ ++GL   G       +F 
Sbjct: 448 TDVAVSNALVTMYMKNGCV--HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFY 505

Query: 208 EMPERDAV----SWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
            M E   +    ++ +IL   +       G    A  +  ++   N V  + ++  Y+K 
Sbjct: 506 HMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC-TALIDMYAKC 564

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +E A + F+R+  + L  WT+II+ YA+    ++A   + QM++ G+KP++ TL   L
Sbjct: 565 MYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCL 624

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           + C+    L  G ++H+ + K     +  V +ALVDMYAKCG ++ A ++F  + ++D +
Sbjct: 625 SGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTI 684

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +WN ++ G A +GQG KAL  F  M DEG  PD  TF G+L AC+H G +++G ++F SM
Sbjct: 685 AWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSM 744

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            RD+GI P V+H  CM+D+LGR G+  E    +Q M +  NA+IW T+LGA + HN + L
Sbjct: 745 YRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVL 804

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E+  + L  L+  +  +Y +LSNIFA  G W+ V  VR  M     +K  G S VE + 
Sbjct: 805 GEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANG 864

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           +VH F   D  HP+ ++I+  ++ L ++L  + +  K
Sbjct: 865 QVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPK 901



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 137/471 (29%), Positives = 234/471 (49%), Gaps = 16/471 (3%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  L+  KQ+ AQ  KL L  D ++   L+   A C ++ LA K+F  + + +   +N L
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVL 285

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           +    Q        ++F  M E  V  + FT   +LK C         Q+IH+LI KCGY
Sbjct: 286 LNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY 345

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
            G+ F+   L+D YSKCG+   ++   +F ++ + DIV W+++I  L + G+  E+ +LF
Sbjct: 346 EGNEFIGCGLVDMYSKCGLAIDAIG--VFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 207 ------DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYS 256
                 D +P +  +   ++L      G +     +   +       ++   + +V  Y 
Sbjct: 404 HLMRLGDTLPNQYTIC--SLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYM 461

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K+G +     L++ M  + L+ W   +SG  + GM      ++  M E G  P+  T IS
Sbjct: 462 KNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFIS 521

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           IL +C+    +  G +VHA I K +   N  VC AL+DMYAKC  L++A   FN ++ +D
Sbjct: 522 ILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD 581

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           L +W  ++   A   QGEKAL  F +M+ EG  P+++T  G L  C+    ++ G Q  +
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG-QQLH 640

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           SM    G +  +     ++D+  + G ++EA  L +++ +  + I W T++
Sbjct: 641 SMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEAL-IRRDTIAWNTII 690



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/424 (30%), Positives = 215/424 (50%), Gaps = 12/424 (2%)

Query: 10  WFSKRRL--LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           W SK++L      L+     ++L   K +   I+K  +  D ++   L++  A CR    
Sbjct: 106 WSSKKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAY 165

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  V   + D DV  +  LI+  V       +  +F +MQ +G+  + FT    LKAC+ 
Sbjct: 166 ARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSL 225

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L + +HA  +K G   D+FV ++L+D Y+KCG   + LA K+F+ M E++ V+WN
Sbjct: 226 CMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG--EIELASKMFIGMPEQNDVTWN 283

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDA----VSWNTILDGYAKAGEM---NLAFELFEKI 240
            ++ G  + G+++   +LF  M E D      +  T+L G A +  +    +   L  K 
Sbjct: 284 VLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKC 343

Query: 241 PHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            +  N      +V  YSK G    A  +F  +    +V W+ +I+   ++G ++E+ +L+
Sbjct: 344 GYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLF 403

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M      P+  T+ S+L+A   +G L  G  +HA + KY F+ +  V NALV MY K 
Sbjct: 404 HLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKN 463

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G + +   ++  M  +DL+SWNA L GL   G  ++ L +F  M +EGF P+ YTF+ +L
Sbjct: 464 GCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISIL 523

Query: 420 CACT 423
            +C+
Sbjct: 524 GSCS 527



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS-----LIDSYSKCGVVGVSLAK 172
           Y  +L+ C  K    + + IH LI K     D+  P+S     L++ Y+KC     + A+
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVK-----DVINPDSHLWVSLVNVYAKCRYS--AYAR 167

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
            +   M +RD+VSW ++I GLV  G  +++  LF EM     +     L    KA  + +
Sbjct: 168 LVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCM 227

Query: 233 AFELFEKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
           A +L +++  +        ++   S +V  Y+K G++E+A  +F  MP +  V W ++++
Sbjct: 228 ALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLN 287

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           GYA++G      +L+  M E  +K ++ TL ++L  CA S  L  G  +H+ I K  ++ 
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEG 347

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           N  +   LVDMY+KCG   +A+ VF  + K D+V W+A++  L   GQ E+++ LF  M+
Sbjct: 348 NEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMR 407

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
                P++YT   +L A T+ G +  G Q  ++    YG    V     ++ +  ++G +
Sbjct: 408 LGDTLPNQYTICSLLSAATNTGNLQYG-QSIHACVWKYGFETDVAVSNALVTMYMKNGCV 466

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGA 489
            +  +L +SM V+ + I W   L  
Sbjct: 467 HDGTKLYESM-VDRDLISWNAYLSG 490


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 195/606 (32%), Positives = 305/606 (50%), Gaps = 55/606 (9%)

Query: 18  EEKLQNLHKCK---NLNQTKQLFAQIIKLDLQRDPYIAP---KLISSLALCRQMGLAIKV 71
           E  L+ L  C+   +L   +   A+++ L     P  A    KLI + A C  + LA  V
Sbjct: 13  ESLLRLLAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSALPLAHTV 72

Query: 72  FNDIQDPD------VHLYNTLIRACVQNSLNAQAFRVFLDMQEKG--VFTDNFTYPFLLK 123
                 PD         +N LIRA   +SL+  A  +F  M+ +G   F D++TYP  LK
Sbjct: 73  LES-SSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALK 131

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           +C+      L   IH+ + K     +++V +S I  YS+CG                   
Sbjct: 132 SCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCG------------------- 172

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK---- 239
                            +A R+FD MP RD VSWN ++ G+A+ G  + A E+F++    
Sbjct: 173 --------------RPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVL 218

Query: 240 ---IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
              +P    ++      G +K  D+   + +FD M  K L+ W  +++ YA      +A 
Sbjct: 219 QGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAV 278

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
            L+  ME+  ++PD  TL ++L  C E     +G ++H  I +     N  + NAL+DMY
Sbjct: 279 ELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMY 338

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           A CG L +A  +F+ M+ +D++SW +++     HG G +A+ LF +M  +G  PD   FV
Sbjct: 339 ASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFV 398

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            VL AC+HAG +  G  YF SM   Y I+P+ EHY CM+DLLGR+G + EA   + +M +
Sbjct: 399 AVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLI 458

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           EPN  +WG LL ACR H+ +++     D L  L     G Y +LSN++A  G W  V +V
Sbjct: 459 EPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSV 518

Query: 537 RLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           R  M     +K  G S VE+ ++VH F + D+ HP+SE IY  ++ L   ++ +G+  ++
Sbjct: 519 RSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEV 578

Query: 597 SAEIGE 602
            A + +
Sbjct: 579 EATLHD 584



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 178/419 (42%), Gaps = 56/419 (13%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM 65
           R P  F         L++    K+L    Q+ + + KL L R+ Y+A   IS  + C + 
Sbjct: 115 RGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRP 174

Query: 66  GLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKA 124
             A +VF+ +   DV  +N +I    +  L  +A  VF   +  +G   D  T   +L A
Sbjct: 175 EDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPA 234

Query: 125 C-NGK-NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
             N K +    V+     ++    F ++   N+++  Y+      V  A +LFM M E+D
Sbjct: 235 MGNAKPDDIRFVRR----VFDNMQFKELISWNAMLAVYAN-NEFHVK-AVELFMLM-EKD 287

Query: 183 IVSWNSMIAGLV--KGGELSE---ARRLFDEMPERDAVS----WNTILDGYAKAGEMNLA 233
            V  +S+    V    GELS     +R+ + +  ++        N ++D YA  G +  A
Sbjct: 288 EVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDA 347

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            E+F+ +  R+++SW++++  Y K G                                 +
Sbjct: 348 REIFDLMSARDVISWTSIISAYGKHGH-------------------------------GR 376

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNAL 352
           EA  L+++M   GL+PD    +++LAAC+ +GLL  G     S+ ++Y           +
Sbjct: 377 EAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCM 436

Query: 353 VDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKAL----GLFSRMKDE 406
           VD+  + G ++ A      M  + +   W A+L    +H   +  L     LFS + ++
Sbjct: 437 VDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQ 495


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 197/589 (33%), Positives = 318/589 (53%), Gaps = 36/589 (6%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND-IQDPDVHLYNTL 86
           KNL++ K++ + ++       P     LI+  + C QM  A+ +F+D   + +V  +N +
Sbjct: 51  KNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAI 110

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   + N    + F  +  M+ +GV  D FT+P  +KAC        ++ IH L++K G 
Sbjct: 111 ISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLE---IKKIHGLLFKFGL 167

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE----LSEA 202
             D+F+ ++L++ Y K G++    A+  F  +  RD+V WN+M+ G  + G+    L   
Sbjct: 168 ELDVFIGSALVNCYLKFGLM--EHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETF 225

Query: 203 RRLFDE--MPERDAVSWNTILDGYAKAGEMN---LAFELFEKIPHRNIVSWS-TMVWGYS 256
           RR+ DE  +P R  V+   +L  +A  G++N   +      K+ + + V+ S +++  Y 
Sbjct: 226 RRMNDESVVPSRFTVT--GVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYG 283

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K   +E A  +F+ M  K +  W  I+S + + G      RL D+M  AG++PD  T+ +
Sbjct: 284 KCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTT 343

Query: 317 ILAACAESGLLGLGMKVHA------------SINKYRFKCNTNVCNALVDMYAKCGSLDN 364
           +L AC+    L  G ++H              I+    K      NA++DMYAKCGS+ +
Sbjct: 344 VLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLK------NAVIDMYAKCGSMRD 397

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  VF  M+ KD+ SWN M+ G  MHG G +AL +FSRM +    PD+ TFVGVL AC+H
Sbjct: 398 AHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSH 457

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AGF+ +G  +   M+  Y + P +EHY C+ID+LGR+G+L EA  L  +MP+E N ++W 
Sbjct: 458 AGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWR 517

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL ACR H    LAE     +  L+    G+Y ++SN++ A G + +V  VR  M++  
Sbjct: 518 ALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQN 577

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            +K  G S +E+ N VH F   D+ HP++  IY  +N+L   L+  G+ 
Sbjct: 578 VRKTPGCSWIELKNGVHVFVSADRAHPEAHSIYAGLNSLTARLREHGYV 626



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 169/380 (44%), Gaps = 18/380 (4%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C ++ + K++   + K  L+ D +I   L++       M  A   F ++   DV L+N +
Sbjct: 149 CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 208

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           +    Q          F  M ++ V    FT   +L         +  ++IH    K GY
Sbjct: 209 VNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGY 268

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
              + V NSLID Y KC  +  +L  ++F  M E+DI SWNS+++   + G+     RL 
Sbjct: 269 DSGVAVSNSLIDMYGKCKCIEDAL--EIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLL 326

Query: 207 DEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----------NIVSWSTMV 252
           D M     + D V+  T+L   +    +    E+   +             +++  + ++
Sbjct: 327 DRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVI 386

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G M  A L+F+RM  K +  W I+I GY   G   EA  ++ +M E  LKPD+ 
Sbjct: 387 DMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 446

Query: 313 TLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T + +L+AC+ +G +  G      + +KY           ++DM  + G LD A  +   
Sbjct: 447 TFVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALT 506

Query: 372 M-TKKDLVSWNAMLYGLAMH 390
           M  + + V W A+L    +H
Sbjct: 507 MPIEANPVVWRALLAACRLH 526


>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 511

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 191/564 (33%), Positives = 315/564 (55%), Gaps = 73/564 (12%)

Query: 30  LNQTKQLFAQIIK--LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +NQ KQL A  ++  +D  +D      L+  L L   +  A K+F+  ++P + LYN LI
Sbjct: 1   MNQIKQLHAHCLRTGVDETKD------LLQRLLLIPNLVYARKLFDLHRNPCIFLYNKLI 54

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           ++   +    ++  ++  +   G+  ++ T+ F+  A    +    ++++H+  ++ G+ 
Sbjct: 55  QSYSVHHQPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE 114

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D F   +LI +Y+                                 K G L  ARR+FD
Sbjct: 115 SDSFCCTALITAYA---------------------------------KLGALCCARRVFD 141

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           EM  RD   WN ++ GY + G+M  A ELF+ +P++N+ SW+T++ G+S++G+   A  +
Sbjct: 142 EMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTM 201

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  M                               ++  +KP+  TL+S+L ACA  G L
Sbjct: 202 FLCME------------------------------KDKSVKPNHITLVSVLPACANLGEL 231

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYG 386
            +G ++     +  F  N  V NA ++MY+KCG +D A  +F+ +  +++L+SWN+M+  
Sbjct: 232 EIGRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGS 291

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LA HG+ ++AL L+++M  EG  PD  TFVG+L AC H G + KG +   SME  + I P
Sbjct: 292 LATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISP 351

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           ++EHYGCMIDLLGR G+L+EA  L+++MP++P+A++WGTLLGAC  H  VE+AE   + L
Sbjct: 352 KLEHYGCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEAL 411

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS-VEVDNEVHEFSV 565
           ++L+ ++PGN  ++SNI+AA   W+ V  +R  MKK    K +G S  VE   EVH+F+V
Sbjct: 412 MKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEAGVEVHKFTV 471

Query: 566 CDQLHPKSEQIYQMINTLGKDLKP 589
            D+ HP+S +IYQ+++ + + +KP
Sbjct: 472 EDKSHPRSYEIYQVLDEISRRMKP 495


>gi|15229345|ref|NP_187126.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207287|sp|Q9SR01.1|PP212_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04750, mitochondrial; Flags: Precursor
 gi|6175175|gb|AAF04901.1|AC011437_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640610|gb|AEE74131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 661

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 211/625 (33%), Positives = 336/625 (53%), Gaps = 58/625 (9%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVF 72
           +L  + L  L  C + NQ KQ+ AQI++ +L  D +   +LI  S++     + LA  +F
Sbjct: 32  QLNHQSLVLLENCNSRNQFKQVLAQIMRFNLICDTFPMSRLIFFSAITYPENLDLAKLLF 91

Query: 73  -NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
            N   +P+V +YNT+I A V +S N + F ++  M    V  D  T+ +L+KA    ++ 
Sbjct: 92  LNFTPNPNVFVYNTMISA-VSSSKN-ECFGLYSSMIRHRVSPDRQTFLYLMKA---SSFL 146

Query: 132 HLVQMIHA--LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             V+ IH   ++  C   G+ ++ NSL+  Y + G  GV  A+K+F  M   D+ S+N M
Sbjct: 147 SEVKQIHCHIIVSGCLSLGN-YLWNSLVKFYMELGNFGV--AEKVFARMPHPDVSSFNVM 203

Query: 190 IAGLVKGGELSEARRLFDEM------PERDAV--------------------SW------ 217
           I G  K G   EA +L+ +M      P+   V                     W      
Sbjct: 204 IVGYAKQGFSLEALKLYFKMVSDGIEPDEYTVLSLLVCCGHLSDIRLGKGVHGWIERRGP 263

Query: 218 ---------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
                    N +LD Y K  E  LA   F+ +  +++ SW+TMV G+ + GDME A+ +F
Sbjct: 264 VYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRSWNTMVVGFVRLGDMEAAQAVF 323

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAAR--LYDQMEEAGLKPDDGTLISILAACAESGL 326
           D+MP + LV W  ++ GY++KG  +   R   Y+      +KPD  T++S+++  A +G 
Sbjct: 324 DQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLISGAANNGE 383

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L  G  VH  + + + K +  + +AL+DMY KCG ++ A  VF   T+KD+  W +M+ G
Sbjct: 384 LSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGIIERAFMVFKTATEKDVALWTSMITG 443

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LA HG G++AL LF RM++EG  P+  T + VL AC+H+G +++G+  F  M+  +G  P
Sbjct: 444 LAFHGNGQQALQLFGRMQEEGVTPNNVTLLAVLTACSHSGLVEEGLHVFNHMKDKFGFDP 503

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQ-SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           + EHYG ++DLL R+GR++EA  +VQ  MP+ P+  +WG++L ACR    +E AE  L  
Sbjct: 504 ETEHYGSLVDLLCRAGRVEEAKDIVQKKMPMRPSQSMWGSILSACRGGEDIETAELALTE 563

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L++L+    G Y +LSNI+A  G W      R  M+    +K +G SSV     +H F  
Sbjct: 564 LLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMENRGVKKTAGYSSVVGVEGLHRFVA 623

Query: 566 CD-QLHPKSEQIYQMINTLGKDLKP 589
            + Q HP+  +I +++  L  ++KP
Sbjct: 624 AEKQNHPRWTEIKRILQHLYNEMKP 648



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 8/218 (3%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM 65
           R P + S   L    L    KCK     K+ F  + K D++        ++        M
Sbjct: 261 RGPVYSSNLILSNALLDMYFKCKESGLAKRAFDAMKKKDMRS----WNTMVVGFVRLGDM 316

Query: 66  GLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR-VFLDMQ-EKGVFTDNFTYPFLLK 123
             A  VF+ +   D+  +N+L+    +   + +  R +F +M   + V  D  T   L+ 
Sbjct: 317 EAAQAVFDQMPKRDLVSWNSLLFGYSKKGCDQRTVRELFYEMTIVEKVKPDRVTMVSLIS 376

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
                      + +H L+ +    GD F+ ++LID Y KCG+  +  A  +F +  E+D+
Sbjct: 377 GAANNGELSHGRWVHGLVIRLQLKGDAFLSSALIDMYCKCGI--IERAFMVFKTATEKDV 434

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL 221
             W SMI GL   G   +A +LF  M E      N  L
Sbjct: 435 ALWTSMITGLAFHGNGQQALQLFGRMQEEGVTPNNVTL 472


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 196/615 (31%), Positives = 329/615 (53%), Gaps = 70/615 (11%)

Query: 37  FAQIIKLDLQRDPYIAPKLISS--------LAL------CRQMGLAIKVFNDIQDPDVHL 82
           F ++I+   + D Y  P +I +        +AL      CR++  A  +F+ +Q+ D+  
Sbjct: 167 FRELIRCGARPDNYTLPFVIRACRDLKNLQMALVDMYVKCREIEDARFLFDKMQERDLVT 226

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +  +I    +     ++  +F  M+E+GV  D      ++ AC      H  ++I   I 
Sbjct: 227 WTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQ 286

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  +  D+ +  ++ID Y+KCG V    A+++F  M E++++SW++MIA     G+  +A
Sbjct: 287 RKKFQLDVILGTAMIDMYAKCGCV--ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKA 344

Query: 203 RRLFDEM------PER---------------------------------DAVSWNTILDG 223
             LF  M      P++                                 + +  N ++  
Sbjct: 345 LDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHF 404

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM------PAKTLV 277
           Y+    ++ A+ LF+ +  R+ VSWS MV G++K GD       F  +      P    +
Sbjct: 405 YSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTL 464

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
           P+          G A E+  L+D+M E G+ PD   +++++ ACA+ G +     +   I
Sbjct: 465 PFC---------GNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYI 515

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            + +F+ +  +  A++DM+AKCG +++A  +F+ M +K+++SW+AM+     HGQG KAL
Sbjct: 516 QRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKAL 575

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF  M   G  P+K T V +L AC+HAG +++G+++F  M  DY +   V+HY C++DL
Sbjct: 576 DLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDL 635

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+GRL EAL+L++SM VE +  +WG  LGACR H  V LAE+    L+ L+  +PG+Y
Sbjct: 636 LGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHY 695

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A  G W  VA  R  M + R +K  G + +EVDN+ H+FSV D  HP+S++IY
Sbjct: 696 ILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIY 755

Query: 578 QMINTLGKDLKPVGH 592
           +M+ +LG  L+ VG+
Sbjct: 756 EMLKSLGNKLELVGY 770



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 149/544 (27%), Positives = 249/544 (45%), Gaps = 64/544 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +  L  C+NL Q +Q+ AQ     +  +  +A KLI   +  R +  A  +F+ +   D 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHA 139
             ++ ++    +       F  F ++   G   DN+T PF+++AC   KN    +QM   
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKN----LQM--- 197

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
                          +L+D Y KC    +  A+ LF  M ERD+V+W  MI G  + G+ 
Sbjct: 198 ---------------ALVDMYVKCR--EIEDARFLFDKMQERDLVTWTVMIGGYAECGKA 240

Query: 200 SEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTM 251
           +E+  LF++M E     D V+  T++   AK G M+ A  + + I  +    +++  + M
Sbjct: 241 NESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAM 300

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  Y+K G +E A+ +FDRM  K ++ W+ +I+ Y   G  ++A  L+  M  +G+ PD 
Sbjct: 301 IDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK 360

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL S+L AC     L    +VHA  + +    N  V N LV  Y+   +LD+A  +F+G
Sbjct: 361 ITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDG 420

Query: 372 MTKKDLVSWNAML----------------------------YGLAMHGQGEKALGLFSRM 403
           M  +D VSW+ M+                            Y L   G   ++L LF +M
Sbjct: 421 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKM 480

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           ++EG  PDK   V V+ AC   G + K       ++R    L  +     MID+  + G 
Sbjct: 481 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA-MIDMHAKCGC 539

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           ++ A  +   M  E N I W  ++ A   H     A ++   ++R  G  P   T++S +
Sbjct: 540 VESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFPMMLR-SGILPNKITLVSLL 597

Query: 524 FAAT 527
           +A +
Sbjct: 598 YACS 601


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 318/575 (55%), Gaps = 10/575 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L    QL +  +K  L+ +  +A  L++  A C+ +  A ++F  +   D+  +N +I 
Sbjct: 257 DLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMIS 316

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            CVQN L  +AF +F DMQ  G   D+ T   LL A    N     + +H  I +     
Sbjct: 317 GCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNM 376

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+F+ ++L+D Y KC    V +A+ L+ +    D+V  ++MI+G V  G   EA ++F  
Sbjct: 377 DVFLVSALVDIYFKCR--DVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRY 434

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGD 260
           + E+    +AV+  ++L G A    + L  ++          R     S ++  Y+K G 
Sbjct: 435 LLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYERKCYVESALMDMYAKCGR 494

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++++  +F +M  K  V W  +IS +++ G  +EA  L+ QM   G+K ++ T+ + L+A
Sbjct: 495 LDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSA 554

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA    +  G ++H    K   K +    +AL+DMYAKCG+L+ A+ VF  M  K+ VSW
Sbjct: 555 CASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSW 614

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N+++     HG  ++++ L   M++EG+ PD  TF+ ++ AC HAG +++GVQ F  M +
Sbjct: 615 NSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMTK 674

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y I P++EH+ CM+DL  RSG+L +A++ +  MP +P+A IWG LL ACR H  VELA+
Sbjct: 675 KYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELAD 734

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L +L  ++ G Y ++SNI A  G W+ V+ VR  MK  +  K  G S V+V+N  
Sbjct: 735 IASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSS 794

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           H F   D+ HP+SE IY  + TL ++L+  G+  +
Sbjct: 795 HLFVASDKSHPESEDIYTSLKTLLQELREEGYVPR 829



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 147/494 (29%), Positives = 244/494 (49%), Gaps = 19/494 (3%)

Query: 43  LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           + L  D Y+   L+   A    +G A   F+ I + D  L+N ++  C++      A R+
Sbjct: 170 IGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRL 229

Query: 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
           F +M+  G   +  T    L  C           +H+L  KCG   ++ V N+L+  Y+K
Sbjct: 230 FRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAK 289

Query: 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWN 218
           C    +  A +LF  M + D+V+WN MI+G V+ G   EA  LF +M       D+++  
Sbjct: 290 CQC--LDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLV 347

Query: 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSW-----STMVWGYSKDGDMEMAKLLFDRMPA 273
           ++L        +    E+   I  RN V+      S +V  Y K  D+ MA+ L+D   A
Sbjct: 348 SLLPALTDLNGLKQGKEVHGYIV-RNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARA 406

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
             +V  + +ISGY   GM++EA +++  + E  +KP+  T+ S+L  CA    L LG ++
Sbjct: 407 IDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQI 466

Query: 334 HASI--NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           H  +  N Y  KC     +AL+DMYAKCG LD +  +F  M++KD V+WN+M+   + +G
Sbjct: 467 HGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNG 524

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           + ++AL LF +M  EG   +  T    L AC     I  G +  + +     I   +   
Sbjct: 525 KPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKE-IHGVTIKGPIKADIFAE 583

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             +ID+  + G L+ ALR+ + MP + N + W +++ A   H  V+ +  +L  + + +G
Sbjct: 584 SALIDMYAKCGNLELALRVFEFMP-DKNEVSWNSIISAYGAHGLVKESVSLLHGM-QEEG 641

Query: 512 SDPGNYTMLSNIFA 525
             P + T L+ I A
Sbjct: 642 YKPDHVTFLALISA 655



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 192/387 (49%), Gaps = 14/387 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L     L Q K++   I++  +  D ++   L+     CR + +A  +++  +  DV
Sbjct: 350 LPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDV 409

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            + +T+I   V N ++ +A ++F  + E+ +  +  T   +L  C       L Q IH  
Sbjct: 410 VIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGY 469

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + +  Y    +V ++L+D Y+KCG   + L+  +F+ M ++D V+WNSMI+   + G+  
Sbjct: 470 VLRNAYERKCYVESALMDMYAKCG--RLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQ 527

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---------RNIVSWSTM 251
           EA  LF +M   + + +N I    A +   +L    + K  H          +I + S +
Sbjct: 528 EALDLFRQMC-MEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESAL 586

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  Y+K G++E+A  +F+ MP K  V W  IIS Y   G+ KE+  L   M+E G KPD 
Sbjct: 587 IDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDH 646

Query: 312 GTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            T +++++ACA +GL+  G+++   +  KY           +VD+Y++ G LD A+    
Sbjct: 647 VTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIA 706

Query: 371 GMT-KKDLVSWNAMLYGLAMHGQGEKA 396
            M  K D   W A+L+   +H   E A
Sbjct: 707 DMPFKPDAGIWGALLHACRVHRNVELA 733



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/481 (23%), Positives = 201/481 (41%), Gaps = 81/481 (16%)

Query: 54  KLISSLALCRQMGLAIKVFNDIQDPDVHL---YNTLIRACVQNSLNAQAFRVFLDM--QE 108
           +L+    L R+   A+ VF+ +          +N LIR       +  A   ++ M    
Sbjct: 75  RLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHP 134

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
                D  T P+++K+C       L +++H      G   D++V ++L+  Y+  G++G 
Sbjct: 135 AAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGN 194

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------------------ 210
             A+  F  + ERD V WN M+ G +K G++  A RLF  M                   
Sbjct: 195 --ARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVC 252

Query: 211 ---------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                                E +    NT+L  YAK   ++ A+ LFE +P  ++V+W+
Sbjct: 253 ATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWN 312

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            M                               ISG  + G+  EA  L+  M+ +G +P
Sbjct: 313 GM-------------------------------ISGCVQNGLFVEAFGLFYDMQRSGARP 341

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  TL+S+L A  +   L  G +VH  I +     +  + +ALVD+Y KC  +  A +++
Sbjct: 342 DSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLY 401

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           +     D+V  + M+ G  ++G  E+AL +F  + ++   P+  T   VL  C     + 
Sbjct: 402 DAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALP 461

Query: 430 KGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            G Q + Y +   Y     VE    ++D+  + GRL  +  +   M  + + + W +++ 
Sbjct: 462 LGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMIS 518

Query: 489 A 489
           +
Sbjct: 519 S 519



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 161/373 (43%), Gaps = 53/373 (14%)

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWNTILDGYAKAGEMNLAFELF 237
           + WN +I G    G+   A   + +M      P  DA +   ++   A  G M+L     
Sbjct: 105 LPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLG---- 160

Query: 238 EKIPHR---------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
            ++ HR         ++   S +V  Y+  G +  A+  FD +P +  V W +++ G  +
Sbjct: 161 -RLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIK 219

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G    A RL+  M  +G +P+  TL   L+ CA    L  G ++H+   K   +    V
Sbjct: 220 AGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAV 279

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N L+ MYAKC  LD+A  +F  M + DLV+WN M+ G   +G   +A GLF  M+  G 
Sbjct: 280 ANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGA 339

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQY---------------------FYSMERDYGILPQ 447
            PD  T V +L A T    + +G +                       Y   RD  +   
Sbjct: 340 RPDSITLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQN 399

Query: 448 VEHYGCMIDLLGRS---------GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNA 495
           +      ID++  S         G  +EAL++ + +    ++PNA+   ++L  C    A
Sbjct: 400 LYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAA 459

Query: 496 VELAEEVLDCLIR 508
           + L +++   ++R
Sbjct: 460 LPLGQQIHGYVLR 472



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 119/260 (45%), Gaps = 5/260 (1%)

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLL 327
           R  A + +PW  +I G+   G    A   Y +M    A   PD  TL  ++ +CA  G +
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG  VH +        +  V +ALV MYA  G L NA   F+G+ ++D V WN M+ G 
Sbjct: 158 SLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGC 217

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
              G  + A+ LF  M+  G  P+  T    L  C     +  G Q  +S+    G+ P+
Sbjct: 218 IKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQ-LHSLAVKCGLEPE 276

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           V     ++ +  +   L +A RL + MP + + + W  ++  C ++     A  +   + 
Sbjct: 277 VAVANTLLAMYAKCQCLDDAWRLFELMP-QDDLVTWNGMISGCVQNGLFVEAFGLFYDMQ 335

Query: 508 RLKGSDPGNYTMLSNIFAAT 527
           R  G+ P + T++S + A T
Sbjct: 336 R-SGARPDSITLVSLLPALT 354



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 11/234 (4%)

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTN---VCNALVDMYAKCGSLDNAMSVFN 370
           L+++L  C  +  L LG+++HA         + N   +   L+ MY       +A++VF+
Sbjct: 35  LLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 371 GMTKKDLVS---WNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHA 425
            + +    S   WN ++ G    GQ   A+  + +M        PD +T   V+ +C   
Sbjct: 95  ALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAAL 154

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +  G +  +   R  G+   V     ++ +   +G L  A      +P E + ++W  
Sbjct: 155 GAMSLG-RLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIP-ERDCVLWNV 212

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           ++  C K   V+ A  +   + R  G +P   T+   +     D + ++  +L 
Sbjct: 213 MMDGCIKAGDVDGAVRLFRNM-RASGCEPNFATLACFLSVCATDADLLSGAQLH 265


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 208/656 (31%), Positives = 337/656 (51%), Gaps = 82/656 (12%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC------RQMGLAIKVFNDIQDPDVH 81
           +++ Q  +L A ++       P  A  L++SL  C        +  A+ +F D       
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLF-DRMPCSTF 68

Query: 82  LYNTLIRACVQNSLNAQA-FRVFLDMQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHA 139
           L++T +RAC + S   ++   ++  M+  GV TD FT+ FL K C  G+    L QM+HA
Sbjct: 69  LFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHA 128

Query: 140 LIYKCGYFGDI-FVPNSLIDSYSKCGVVGVS---------------------LAKK---- 173
             ++      +  V N +I  Y + G+ G +                     LAK     
Sbjct: 129 ACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLD 188

Query: 174 ----LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTIL---- 221
               L      R+++SW  +I+G  + G  +EA   F+ M     E D V+   +L    
Sbjct: 189 DAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACA 248

Query: 222 -------------------------------DGYAKAGEMNLAFELFEKIPH-RNIVSWS 249
                                          D YAK G++  A+E+F+ +   R   SW+
Sbjct: 249 QLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWN 308

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            M+ GY K G +++A+ LFD+M  + LV +  +I+GY   G  +EA  L+ QM    L+ 
Sbjct: 309 AMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRA 368

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D+ T++S+L ACA  G L  G  +HA I +   + +  +  AL+DMY KCG ++ A  VF
Sbjct: 369 DNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVF 428

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
             M+ +D+ +W+AM+ GLA +G G+ AL  F  MK +GF P+  T++ +L AC+H+  +D
Sbjct: 429 QAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLD 488

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +G  YF  M   + I P +EHYGCMIDLLGRSG L EA+ LV++MP++PNA+IW ++L A
Sbjct: 489 EGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSA 548

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           CR H    LA    + L++L+  +   Y  L NI+  +  W   + +R  M++   +K +
Sbjct: 549 CRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAA 608

Query: 550 GASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA---AKLSAEIGE 602
           G SS+ V  +VH+F VCD+ HP+  +I  M+  + + LK VG++   ++++ ++ E
Sbjct: 609 GYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDE 664



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 140/332 (42%), Gaps = 51/332 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC ++ +  ++F  + +    R P     +I        + +A  +F+ ++D D+  +N+
Sbjct: 284 KCGDIGRAWEVFDALGR---GRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNS 340

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI   +      +A  +F+ M+   +  DNFT   LL AC         + +HA I +  
Sbjct: 341 LITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRL 400

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE------- 198
              DI++  +L+D Y KCG   V  A  +F +M  RD+ +W++MIAGL   G        
Sbjct: 401 VEVDIYLGTALLDMYLKCG--RVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEY 458

Query: 199 ----------------------------LSEARRLFDEMPERDAVS-----WNTILDGYA 225
                                       L E R  F+EM     +      +  ++D   
Sbjct: 459 FFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLG 518

Query: 226 KAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAK----LLFDRMPAKTLVPWT 280
           ++G ++ A +L   +P + N V W++++       D  +A+     L    P +  V + 
Sbjct: 519 RSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAV-YV 577

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + + Y +    ++A+++   MEE G+K   G
Sbjct: 578 QLYNIYIDSRQWEDASQIRRLMEERGVKKAAG 609


>gi|356507694|ref|XP_003522599.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Glycine max]
          Length = 535

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 295/549 (53%), Gaps = 51/549 (9%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHL 82
           H C  L + KQ+ A I K  L        KLI  S+L+    +  A  +F      +  +
Sbjct: 14  HLCSML-ELKQVQAIITKAGLHSHLPFTAKLIFFSALSPMGNLSHAHSLFLQTSMHNSFI 72

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF--HLVQM---- 136
            NT+IRA   +S   QA  ++  M    V +D+FTY F+LKAC+  + F    V+     
Sbjct: 73  CNTMIRAFANSSYPLQALYIYNHMHTTNVVSDHFTYNFVLKACSRAHKFAQEFVKCDEFI 132

Query: 137 -------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
                  +H  + K G   D  + NSL+  YS+CG+V V                     
Sbjct: 133 IISKGGEVHCTVLKLGLDQDPSIQNSLLCMYSQCGLVHV--------------------- 171

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                       A+ LFDE+  R  VSWN ++  Y +  +   A  L E +PH+N+VSW+
Sbjct: 172 ------------AQHLFDEISNRSLVSWNIMISAYDRVNDSKSADYLLESMPHKNVVSWN 219

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           T++  Y + GD+E A+ +F  MP +  V W  +I+G       + A  L+ +M+ A ++P
Sbjct: 220 TVIGRYIRLGDIEGARRVFQIMPQRDAVSWNSLIAGCVSVKDYEGAMGLFSEMQNAEVRP 279

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
            + TLIS+L ACAE+G L +G K+H S+     K    + NAL++MY+KCG L++A  VF
Sbjct: 280 TEVTLISVLGACAETGALEMGSKIHESLKACGHKIEGYLGNALLNMYSKCGKLNSAWEVF 339

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD--EGFGPDKYTFVGVLCACTHAGF 427
           NGM  K L  WNAM+ GLA+HG  E+AL LFS M+   +   P++ TF+GVL AC+H G 
Sbjct: 340 NGMRIKTLSCWNAMIVGLAVHGYCEEALQLFSEMESGLDTVRPNRVTFLGVLIACSHKGL 399

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +DK    F  M + Y ILP ++HYGC++DLL R G L+EA +++++ P++ +AI+W TLL
Sbjct: 400 VDKARWNFDHMAKQYKILPDIKHYGCIVDLLSRFGLLEEAHQMIKTAPLQNSAILWRTLL 459

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           GACR    VELA+     L +L     G+Y +LSNI+A    W++V  VR +M      K
Sbjct: 460 GACRTQGNVELAKVSFQQLAKLGRLTDGDYVLLSNIYAEAERWDEVERVRSEMIGLHVPK 519

Query: 548 PSGASSVEV 556
               S +++
Sbjct: 520 QVAYSQIDM 528


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 171/436 (39%), Positives = 262/436 (60%), Gaps = 10/436 (2%)

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           IH    K G+   +FV N+LI  Y+ CG +G   A+K+F  M +RD+VSWN++I G  + 
Sbjct: 46  IHVHALKLGFESYLFVSNALIHMYAMCGQLG--FAQKMFDGMLDRDLVSWNTLICGYSQY 103

Query: 197 GELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN----IVSW 248
            +  E  RLFD M     + DAV+   I+   +  G+   A  + + I   N    +   
Sbjct: 104 NKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLG 163

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           +T++  Y + G++  A+ LFD MP + ++ WT +I+GY++     +A +L+ +M  A +K
Sbjct: 164 NTLIDMYGRLGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVK 223

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           PD  T+ S+L+ACA  G L +G  VH  I ++  + +  V N+L+DMY KCG ++ A+ V
Sbjct: 224 PDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEV 283

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ M  KD VSW +++ GLA++G    AL LFS+M  EG  P   TFVG+L AC HAG +
Sbjct: 284 FHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLV 343

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           +KG++YF SME  +G++P ++HYGC++DLL RSG + +A   ++ MP+ P+ ++W  LL 
Sbjct: 344 NKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLS 403

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           AC+ H  V LAE     L+ L   D GNY +LSN +A    W+    +R  M+ +  QKP
Sbjct: 404 ACKLHGNVVLAEIATKRLLELDPCDSGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKP 463

Query: 549 SGASSVEVDNEVHEFS 564
           SG+SS+EVD  V  +S
Sbjct: 464 SGSSSIEVDGMVSNYS 479



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 183/370 (49%), Gaps = 12/370 (3%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
           +  +    +KL  +   +++  LI   A+C Q+G A K+F+ + D D+  +NTLI    Q
Sbjct: 43  SSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQ 102

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
            +   +  R+F  M    +  D  T   ++ AC+    +     +   I +     D+++
Sbjct: 103 YNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYL 162

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM--- 209
            N+LID Y + G   ++ A+KLF +M +RD++SW SMI G  +  + S+A +LF EM   
Sbjct: 163 GNTLIDMYGRLG--NLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAA 220

Query: 210 -PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMA 264
             + D V+  ++L   A  G++++ + +   I       +I   ++++  Y K G +E A
Sbjct: 221 KVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKA 280

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F RM  K  V WT +ISG A  G A  A  L+ QM   G++P  GT + IL ACA +
Sbjct: 281 LEVFHRMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHA 340

Query: 325 GLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNA 382
           GL+  G++   S+   +           +VD+ ++ G++D A      M    D+V W  
Sbjct: 341 GLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRI 400

Query: 383 MLYGLAMHGQ 392
           +L    +HG 
Sbjct: 401 LLSACKLHGN 410


>gi|242096978|ref|XP_002438979.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
 gi|241917202|gb|EER90346.1| hypothetical protein SORBIDRAFT_10g029325 [Sorghum bicolor]
          Length = 723

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/645 (31%), Positives = 332/645 (51%), Gaps = 75/645 (11%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC----RQMGLAIKVFNDIQDPDVHLY 83
           +++ Q  QL A +           A  L++SL  C    R +   + +F+ +  P   L+
Sbjct: 10  RSVRQASQLHAILTTSGRIAHRPSAEHLLNSLTNCLSAPRHLRYVLSLFDRLPHPTTFLH 69

Query: 84  NTLIRACVQNSLNA-QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +T +RAC+Q S  A     +   M+  GV    FT+ F+ + C       L +M+HA   
Sbjct: 70  DTALRACLQASAGADHPVLILRRMRRGGVRMSAFTFHFVFRCCAAGAGAGLCRMLHAACL 129

Query: 143 KCGYFGDI-FVPNSLIDSYSKCG----------------------VVG-------VSLAK 172
           +         V N LI  Y+  G                      V+G       +  A+
Sbjct: 130 RTMLPSAARIVANPLIHMYASLGLTDDARRAFDEVPVKDAVVWATVIGGLVRWGLLDEAR 189

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWN-------- 218
           +L +   ER++VSW S+IAG  + G  ++A   F+ M      P+  AV           
Sbjct: 190 RLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVEPDEVAVIGALSACSKLK 249

Query: 219 -------------------------TILDGYAKAGEMNLAFELFEKIPH-RNIVSWSTMV 252
                                    T++D YAK G++  A  +F+ +   +    W+ ++
Sbjct: 250 NLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNVII 309

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            GY K G +++A+ LFD+M A+ ++ +  +I+GY   G  ++A +L+ Q+   G++ D+ 
Sbjct: 310 DGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRADNF 369

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T++S+L ACA  G L  G  +HASI +   + +  +  ALVDMY KCG +D A +VF+ M
Sbjct: 370 TVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCGRVDEATAVFHRM 429

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++D+ +W+AM+ GLA +G G  AL  F +MK +GF P   T++ VL AC+H+  +++G 
Sbjct: 430 GERDVHTWSAMIAGLAFNGMGMDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLNEGR 489

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           Q+F  M   + + PQ+EHYGCMIDLL RSG L EA+ LVQ+MP++PNA+IW ++L ACR 
Sbjct: 490 QHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASILSACRV 549

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  ++LA    + L++L   +   Y  L NI+  +  W +   +R+ M++   +K +G S
Sbjct: 550 HKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWVEAKRIRMLMEEQGVKKTAGYS 609

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           S+ V  +VH+F V DQ HP + +I  M+  + + LK  G++   S
Sbjct: 610 SITVAGQVHKFVVNDQSHPWTLEIITMMEEIARRLKSAGYSPATS 654



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 129/303 (42%), Gaps = 46/303 (15%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI---QDP---- 78
           K KNL   + L   + K  +Q    +   LI   A C  +  A  VF+ +   Q P    
Sbjct: 247 KLKNLEFGRLLHLLVGKKRIQMTDKLVVTLIDMYAKCGDIAQAQAVFDAVGRGQKPEPWN 306

Query: 79  -------------------------DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113
                                    DV  +N++I   + +     A ++F+ ++  G+  
Sbjct: 307 VIIDGYCKLGHVDIARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQLRRHGMRA 366

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           DNFT   LL AC         + +HA I +     D+++  +L+D Y KCG   V  A  
Sbjct: 367 DNFTVVSLLTACASLGALPQGRALHASIEQRIVEEDVYLVTALVDMYMKCG--RVDEATA 424

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD-----AVSWNTILDGYAKAG 228
           +F  MGERD+ +W++MIAGL   G   +A   F +M +RD     +V++  +L   + + 
Sbjct: 425 VFHRMGERDVHTWSAMIAGLAFNGMGMDALESFCQM-KRDGFQPTSVTYIAVLTACSHSS 483

Query: 229 EMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWTII 282
            +N   + F ++      H  I  +  M+   ++ G ++ A  L   MP +   V W  I
Sbjct: 484 LLNEGRQHFNEMRSLHKLHPQIEHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWASI 543

Query: 283 ISG 285
           +S 
Sbjct: 544 LSA 546


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 317/568 (55%), Gaps = 14/568 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+ A I++  L+ D  +   LI S   C ++  A K+FN + + ++  + TL+    QN
Sbjct: 269 KQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN 328

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           +L+ +A  +F  M + G+  D +    +L +C   +       +HA   K     D +V 
Sbjct: 329 ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVT 388

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG---ELSEARRLFDEMP 210
           NSLID Y+KC  +  + A+K+F      D+V +N+MI G  + G   EL EA  +F +M 
Sbjct: 389 NSLIDMYAKCDCL--TDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMR 446

Query: 211 ER----DAVSWNTILDGYAKAGEMNLAFE----LFEKIPHRNIVSWSTMVWGYSKDGDME 262
            R      +++ ++L   A    + L+ +    +F+   + +I + S ++  YS    ++
Sbjct: 447 FRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLK 506

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            ++L+FD M  K LV W  + +GY ++   +EA  L+ +++ +  +PD+ T  +++ A  
Sbjct: 507 DSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAG 566

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
               + LG + H  + K   +CN  + NAL+DMYAKCGS ++A   F+    +D+V WN+
Sbjct: 567 NLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAFDSAASRDVVCWNS 626

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ++   A HG+G+KAL +  +M  EG  P+  TFVGVL AC+HAG ++ G++ F  M R +
Sbjct: 627 VISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLR-F 685

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P+ EHY CM+ LLGR+GRL +A  L++ MP +P AI+W +LL  C K   VELAE  
Sbjct: 686 GIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHA 745

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            +  I     D G++TMLSNI+A+ G W +   VR +MK     K  G S + ++ EVH 
Sbjct: 746 AEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHI 805

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           F   D+ H K+ QIY++++ L   ++ V
Sbjct: 806 FLSKDKSHCKANQIYEVLDDLLVQIRGV 833



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 144/559 (25%), Positives = 253/559 (45%), Gaps = 95/559 (16%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+    +  QII   L+ D Y++  LI+  +    M  A KVF  + + ++  ++T++ A
Sbjct: 60  LHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSA 119

Query: 90  CVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKN----WFHLVQMIHALIYKC 144
           C  + +  ++  VFL+  + +    + +     ++AC+G +    W  +V  + + + K 
Sbjct: 120 CNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRW--MVFQLQSFLVKS 177

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+  D++V   LID Y K G   +  A+ +F ++ E+  V+W +MI+G VK G    + +
Sbjct: 178 GFDRDVYVGTLLIDFYLKDG--NIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQ 235

Query: 205 LFDEMP---------------------------------------ERDAVSWNTILDGYA 225
           LF ++                                        E DA   N ++D Y 
Sbjct: 236 LFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYV 295

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           K G +  A +LF  +P++NI+SW+T++ GY ++                           
Sbjct: 296 KCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQN--------------------------- 328

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
                + KEA  L+  M + GLKPD     SIL +CA    LG G +VHA   K     +
Sbjct: 329 ----ALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGND 384

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG---QGEKALGLFSR 402
           + V N+L+DMYAKC  L +A  VF+     D+V +NAM+ G +  G   +  +AL +F  
Sbjct: 385 SYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRD 444

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGV-QYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           M+     P   TFV +L A   A     G+ +  + +   YG+   +     +ID+    
Sbjct: 445 MRFRLIRPSLLTFVSLLRAS--ASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNC 502

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTM 519
             LK++  +   M V+ + +IW ++     + +     EE L+  + L+ S   P  +T 
Sbjct: 503 YCLKDSRLVFDEMKVK-DLVIWNSMFAGYVQQSE---NEEALNLFLELQLSRERPDEFT- 557

Query: 520 LSNIFAATGDWNKVANVRL 538
            +N+  A G+   +A+V+L
Sbjct: 558 FANMVTAAGN---LASVQL 573



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 128/503 (25%), Positives = 232/503 (46%), Gaps = 17/503 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL + ++K    RD Y+   LI        +  A  VF+ + +     + T+I  CV+  
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMG 228

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
            +  + ++F  + E  V  D +    +L AC+   +    + IHA I + G   D  + N
Sbjct: 229 RSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP---- 210
            LIDSY KCG V    A KLF  M  ++I+SW ++++G  +     EA  LF  M     
Sbjct: 289 VLIDSYVKCGRVIA--AHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGL 346

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS----TMVWGYSKDGDMEMAKL 266
           + D  + ++IL   A    +    ++       N+ + S    +++  Y+K   +  A+ 
Sbjct: 347 KPDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARK 406

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMA---KEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           +FD   A  +V +  +I GY+  G      EA  ++  M    ++P   T +S+L A A 
Sbjct: 407 VFDIFAAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASAS 466

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              LGL  ++H  + KY    +    +AL+D+Y+ C  L ++  VF+ M  KDLV WN+M
Sbjct: 467 LTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSM 526

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
             G     + E+AL LF  ++     PD++TF  ++ A  +   +  G Q F+      G
Sbjct: 527 FAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG-QEFHCQLLKRG 585

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           +         ++D+  + G  ++A +   S     + + W +++ +   H   + A ++L
Sbjct: 586 LECNPYITNALLDMYAKCGSPEDAHKAFDS-AASRDVVCWNSVISSYANHGEGKKALQML 644

Query: 504 DCLIRLKGSDPGNYTMLSNIFAA 526
           + ++  +G +P NY     + +A
Sbjct: 645 EKMMS-EGIEP-NYITFVGVLSA 665



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 190/392 (48%), Gaps = 16/392 (4%)

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           LL+     +  H   ++H  I   G   D ++ N LI+ YS+ G  G+  A+K+F  M E
Sbjct: 50  LLQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAG--GMVYARKVFEKMPE 107

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI-----------LDGYAKAGE 229
           R++VSW++M++     G   E+  +F E       S N             LDG  +   
Sbjct: 108 RNLVSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMV 167

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
             L   L +    R++   + ++  Y KDG+++ A+L+FD +P K+ V WT +ISG  + 
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G +  + +L+ Q+ E  + PD   L ++L+AC+    L  G ++HA I +Y  + + ++ 
Sbjct: 228 GRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLM 287

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N L+D Y KCG +  A  +FNGM  K+++SW  +L G   +   ++A+ LF+ M   G  
Sbjct: 288 NVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLK 347

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
           PD Y    +L +C     +  G Q + Y+++ + G    V +   +ID+  +   L +A 
Sbjct: 348 PDMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTN--SLIDMYAKCDCLTDAR 405

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           ++          +    + G  R     EL E
Sbjct: 406 KVFDIFAAADVVLFNAMIEGYSRLGTQWELHE 437



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 169/372 (45%), Gaps = 62/372 (16%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L  +KQ+   + K  L  D +    LI   + C  +  +  VF++++  D+ ++N++  
Sbjct: 469 SLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFA 528

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             VQ S N +A  +FL++Q      D FT+  ++ A        L Q  H  + K G   
Sbjct: 529 GYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLEC 588

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + ++ N+L+D Y+KCG      A K F S   RD+V WNS+I+     GE  +A ++ ++
Sbjct: 589 NPYITNALLDMYAKCG--SPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEK 646

Query: 209 M----PERDAVSWNTIL----------DG-------------------------YAKAGE 229
           M     E + +++  +L          DG                           +AG 
Sbjct: 647 MMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRAGR 706

Query: 230 MNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAK------LLFDRMPAKTLVPWTII 282
           +N A EL EK+P +   + W +++ G +K G++E+A+      +L D    K    +T++
Sbjct: 707 LNKARELIEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSD---PKDSGSFTML 763

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
            + YA KGM  EA ++ ++M+  G+  + G              +G+  +VH  ++K + 
Sbjct: 764 SNIYASKGMWTEAKKVRERMKVEGVVKEPG-----------RSWIGINKEVHIFLSKDKS 812

Query: 343 KCNTNVCNALVD 354
            C  N    ++D
Sbjct: 813 HCKANQIYEVLD 824


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 202/588 (34%), Positives = 314/588 (53%), Gaps = 39/588 (6%)

Query: 18  EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC-----RQMGLAIKVF 72
           E  +  L KCK++ Q KQ+ +  IK+ L  DP    ++I   A C       M  A +VF
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVI---AFCCAHESGNMNYAHQVF 64

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + I  P + ++NT+I+   + S       ++L M    +  D FT+PF LK         
Sbjct: 65  DTIPHPSMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQ 124

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIA 191
             + +     K G+  ++FV  + I  +S CG+V   LA K+F  MG+  ++V+WN M++
Sbjct: 125 HGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIV--DLAHKVF-DMGDACEVVTWNIMLS 181

Query: 192 GL--VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
           G   VK  ++S+   +     +   + W   +  Y   G +   F               
Sbjct: 182 GYNRVKQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMF--------------- 226

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
                 +  G+M+ A+ +FD M  + +V WT +I GY        A  L+ +M+ + +KP
Sbjct: 227 ------AACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSNVKP 280

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D+ T++SIL ACA  G L LG  V   I+K   K ++ V NALVDMY KCG++  A  VF
Sbjct: 281 DEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVF 340

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
             M +KD  +W  M+ GLA++G GE+AL +FS M +    PD+ T++GVLCAC     +D
Sbjct: 341 KEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC----MVD 396

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           KG  +F +M   +GI P V HYGCM+DLLG  G L+EAL ++ +MPV+PN+I+WG+ LGA
Sbjct: 397 KGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGA 456

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           CR H  V+LA+     ++ L+  +   Y +L NI+AA+  W  +  VR  M +   +K  
Sbjct: 457 CRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIKKTP 516

Query: 550 GASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           G S +E++  V+EF   DQ HP+S++IY  +  + + L   G++   S
Sbjct: 517 GCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTS 564


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/626 (31%), Positives = 326/626 (52%), Gaps = 49/626 (7%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +L Q +++  ++    L     +A  L++  A    +G A ++F  +Q  D   +
Sbjct: 117 LGACSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSW 176

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I A  Q+   + A R+F +M+   V  ++ TY  ++   +        + IHA I  
Sbjct: 177 NAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  D+ V  +LI+ Y KCG      A+++F  M +RD+VSWN MI   V  G+  EA 
Sbjct: 236 NGFDTDLVVATALINMYGKCG--SSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEAL 293

Query: 204 RLFDEMP----ERDAVSWNTILDG-----------------------------------Y 224
            L+ ++     +R   ++ +IL                                     Y
Sbjct: 294 ELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY 353

Query: 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG---DMEMAKLLFDRMPAKTLVPWTI 281
           AK G +  A ++F  + +R+ V+WST++  Y+ +G   D   A+ +FDR+ ++  + W  
Sbjct: 354 AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNA 413

Query: 282 IISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           +I+ Y + G A  A +++ +M   AGLKPD  T I++L ACA  G L     +HA I++ 
Sbjct: 414 MITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISES 473

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             + N  V N L++MYA+CGSL+ A  +F    +K +VSW AM+   + +G+  +AL LF
Sbjct: 474 ELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLF 533

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             M  EG  PD  T+  +L  CTH G +++G +YF  M   + + P  +H+  M+DLLGR
Sbjct: 534 QEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGR 593

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           SGRL +A  L++SMP EP+ + W T L ACR H  +EL E   + +  L  S    Y  +
Sbjct: 594 SGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAM 653

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           SNI+AA G W KVA+VR +M++   +K  G S +EVD ++HEFS   + HP++++I + +
Sbjct: 654 SNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEEL 713

Query: 581 NTLGKDLKPVGHAAKLSA---EIGEG 603
             L   ++  G+     A   ++ EG
Sbjct: 714 TRLHGLMRAAGYVPDTKAVLHDVSEG 739



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 149/551 (27%), Positives = 252/551 (45%), Gaps = 64/551 (11%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN--DIQDPDVHLYN 84
           C ++ + + L  +I     +RD  +   LIS    C  +  A  VF   D +  +V  +N
Sbjct: 20  CGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWN 79

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ--MIHALIY 142
            +I A  QN  + +A  ++  M  +G+ TD+ T+  +L AC+      L Q   IH  ++
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSS-----LAQGREIHNRVF 134

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
             G      + N+L+  Y++ G VG   AK++F S+  RD  SWN++I    + G+ S A
Sbjct: 135 YSGLDSFQSLANALVTMYARFGSVGD--AKRMFQSLQTRDETSWNAVILAHSQSGDWSGA 192

Query: 203 RRLFDEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGY 255
            R+F EM    + ++ ++  ++ G++    +    ++  +I       ++V  + ++  Y
Sbjct: 193 LRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMY 252

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K G    A+ +FD+M  + +V W ++I  Y   G   EA  LY +++  G K    T +
Sbjct: 253 GKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFV 312

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           SIL AC+    L  G  VH+ I +        V  ALV+MYAKCGSL+ A  VFN M  +
Sbjct: 313 SILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNR 372

Query: 376 DLVSWNAMLYGLAMHGQGE---KALGLFSRMKDE-------------------------- 406
           D V+W+ ++   A +G G+   KA  +F R+                             
Sbjct: 373 DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFR 432

Query: 407 ------GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
                 G  PD  TF+ VL AC   G + + V+  ++   +  +   V     +I++  R
Sbjct: 433 EMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNTLINMYAR 491

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGAC----RKHNAVELAEEVLDCLIRLKGSDPGN 516
            G L+EA RL  +   E   + W  ++ A     R   A++L +E     + L+G  P +
Sbjct: 492 CGSLEEAERLFAAAK-EKTVVSWTAMVAAFSQYGRYAEALDLFQE-----MDLEGVKPDD 545

Query: 517 YTMLSNIFAAT 527
            T  S +F  T
Sbjct: 546 VTYTSILFVCT 556



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 98/182 (53%), Gaps = 12/182 (6%)

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +PD+ T +++L +C+  G +  G  +H  I   RF+ +T V NAL+ MY KC SL +A S
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 368 VFNGM--TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH- 424
           VF  M   ++++VSWNAM+   A +G   +AL L+ RM  +G G D  TFV VL AC+  
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSL 123

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP----NA 480
           A   +   + FYS    +  L        ++ +  R G + +A R+ QS+        NA
Sbjct: 124 AQGREIHNRVFYSGLDSFQSLANA-----LVTMYARFGSVGDAKRMFQSLQTRDETSWNA 178

Query: 481 II 482
           +I
Sbjct: 179 VI 180


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 187/585 (31%), Positives = 314/585 (53%), Gaps = 57/585 (9%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F +I   DV  +  LI    +  L+A    +F  MQ++GV  + FT   +LK+C+ 
Sbjct: 340 AHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSIVLKSCSS 399

Query: 128 K-NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             N   + + IH  I + G   D  + NS++D Y KC   G   A+KLF  M E+D VSW
Sbjct: 400 NVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFG--YAEKLFGLMAEKDTVSW 457

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PH 242
           N M++  ++ G++ ++  LF ++P +DA SWNT++DG  + G   +A EL  K+    P 
Sbjct: 458 NIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPA 517

Query: 243 RNIVSWS-----------------------------------TMVWGYSKDGDMEMAKLL 267
            N +++S                                   +++  Y K G+ME A ++
Sbjct: 518 FNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVI 577

Query: 268 FDRMPAKTL---------------VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           F  +P ++                V W+ ++SGY + G  ++A + +  M  + ++ D  
Sbjct: 578 FKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKF 637

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           TL S+++ACA +G+L LG +VH  I K     +  + ++++DMY KCGSL++A  +FN  
Sbjct: 638 TLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQA 697

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             +++V W +M+ G A+HGQG +A+ LF  M +EG  P++ +FVGVL AC+HAG +++G 
Sbjct: 698 KDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGC 757

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +YF  M   YGI P  EH+ CM+DL GR+GRL E    + +  +   + +W + L +CR 
Sbjct: 758 KYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRV 817

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  +E+   V   L+ L+  D G Y + S+I A    W + A +R  M++   +K    S
Sbjct: 818 HKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQS 877

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            +++ N+VH F + D+ HP+  +IY  ++ L   LK +G++  ++
Sbjct: 878 WIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVT 922



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/433 (21%), Positives = 170/433 (39%), Gaps = 101/433 (23%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N ++    K   L +A ++F+E+P+ D  SW  ++ G+A+ G       LF K+  + + 
Sbjct: 325 NHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVC 384

Query: 247 -----------SWSTMV-----------WGYSKDGDME------------------MAKL 266
                      S S+ V           W      D++                   A+ 
Sbjct: 385 PNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEK 444

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ------------------------- 301
           LF  M  K  V W I++S Y + G  +++  L+ Q                         
Sbjct: 445 LFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVA 504

Query: 302 ------MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
                 M  AG   +  T    L   +   +LGLG ++H  + K     +  V N+L+DM
Sbjct: 505 LELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDM 564

Query: 356 YAKCGSLDNAMSVFNGMTKK---------------DLVSWNAMLYGLAMHGQGEKALGLF 400
           Y KCG ++ A  +F  + ++               + VSW++M+ G   +G+ E AL  F
Sbjct: 565 YCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTF 624

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH------YGCM 454
           S M       DK+T   V+ AC  AG ++ G Q        +G + ++ H         +
Sbjct: 625 SFMICSQVEVDKFTLTSVVSACASAGVLELGRQV-------HGYIQKIGHGLDVFLGSSI 677

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           ID+  + G L +A  L+ +   + N ++W +++  C  H     A  + + +I  +G  P
Sbjct: 678 IDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMIN-EGITP 735

Query: 515 GNYTMLSNIFAAT 527
              + +  + A +
Sbjct: 736 NEVSFVGVLTACS 748



 Score = 43.1 bits (100), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+   I K+    D ++   +I     C  +  A  +FN  +D +V L+ ++I  C  +
Sbjct: 656 RQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTSMISGCALH 715

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGY 146
               +A R+F  M  +G+  +  ++  +L AC+       G  +F L++ ++ +     +
Sbjct: 716 GQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVYGIRPGAEH 775

Query: 147 FGDIFVPNSLIDSYSKCG 164
           F        ++D Y + G
Sbjct: 776 F------TCMVDLYGRAG 787


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 308/570 (54%), Gaps = 13/570 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+  Q IK     D  +   L+        +    +VF++++  +V  + +L+    QN
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            LN QA ++F  MQ +G+  + FT+  +L              +H ++ K G    IFV 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           NS+++ YSK   + VS AK +F SM  R+ VSWNSMIAG V  G   EA  LF  M    
Sbjct: 232 NSMVNMYSKS--LMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAK 265
            +     + T++   A   EM+ A +L  ++       ++   + ++  YSK  +++ A 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 266 LLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAE 323
            LF  M   + +V WT IISGY + G    A  L+ QM  E G++P++ T  S+L ACA 
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAA 409

Query: 324 -SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            +  +  G + H+   K  F     V +ALV MYAK G++++A  VF     +DLVSWN+
Sbjct: 410 PTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNS 469

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG G+K+L +F  M+ +    D  TF+GV+ ACTHAG +++G +YF  M +DY
Sbjct: 470 MISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDY 529

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I+P +EHY CM+DL  R+G L++A+ L+  MP    A IW TLL ACR H  V+L E  
Sbjct: 530 HIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELA 589

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + LI L+  D   Y +LSNI+A  G+W + A VR  M   + +K +G S +EV N+   
Sbjct: 590 AEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFS 649

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F   D  HP+S++IY  +  L   LK  G+
Sbjct: 650 FMAGDLSHPQSDRIYLKLEELSIRLKDAGY 679



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 214/436 (49%), Gaps = 17/436 (3%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           ++F++     +   N L+    +N  N +A  +FL ++  G  TD  +   +LK C G  
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC-GCL 105

Query: 130 WFHLV-QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
           +  +V + +H    KCG+  D+ V  SL+D Y K     V   +++F  M  +++VSW S
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMK--TESVEDGERVFDEMRVKNVVSWTS 163

Query: 189 MIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           ++AG  + G   +A +LF +M     + +  ++  +L G A  G +    ++   +    
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 245 IVSW----STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           + S     ++MV  YSK   +  AK +FD M  +  V W  +I+G+   G+  EA  L+ 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           +M   G+K       +++  CA    +    ++H  + K     + N+  AL+  Y+KC 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS 343

Query: 361 SLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGV 418
            +D+A  +F  M   +++VSW A++ G   +G+ ++A+ LF +M ++EG  P+++TF  V
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSV 403

Query: 419 LCACTH-AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           L AC      +++G Q F+S     G    +     ++ +  + G ++ A  + +   V+
Sbjct: 404 LNACAAPTASVEQGKQ-FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VD 461

Query: 478 PNAIIWGTLLGACRKH 493
            + + W +++    +H
Sbjct: 462 RDLVSWNSMISGYAQH 477



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 3/248 (1%)

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           ++ LFD  P + L     ++  ++     KEA  L+  +  +G   D  +L  +L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
                +G +VH    K  F  + +V  +LVDMY K  S+++   VF+ M  K++VSW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           L G   +G  E+AL LFS+M+ EG  P+ +TF  VL      G ++KGVQ  ++M    G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           +   +     M+++  +S  + +A  +  SM    NA+ W +++      N ++L    L
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVT-NGLDLEAFEL 281

Query: 504 DCLIRLKG 511
              +RL+G
Sbjct: 282 FYRMRLEG 289



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 127/257 (49%), Gaps = 14/257 (5%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-PDVHLYNTL 86
           K ++  KQL  Q+IK     D  I   L+ + + C ++  A K+F  +    +V  +  +
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 87  IRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKC 144
           I   VQN    +A  +F  M +E+GV  + FT+  +L AC          +  H+   K 
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 427

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+   + V ++L+  Y+K G   +  A ++F    +RD+VSWNSMI+G  + G   ++ +
Sbjct: 428 GFSNALCVSSALVTMYAKRG--NIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLK 485

Query: 205 LFDEMP----ERDAVSWNTILDGYAKAGEMNLA---FELFEKIPH--RNIVSWSTMVWGY 255
           +F+EM     E D +++  ++     AG +N     F+L  K  H    +  +S MV  Y
Sbjct: 486 IFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLY 545

Query: 256 SKDGDMEMAKLLFDRMP 272
           S+ G +E A  L ++MP
Sbjct: 546 SRAGMLEKAMDLINKMP 562



 Score = 44.3 bits (103), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 25/214 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++ Q KQ  +  IK        ++  L++  A    +  A +VF    D D+  +N++I 
Sbjct: 413 SVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMIS 472

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
              Q+    ++ ++F +M+ K +  D  T+  ++ AC        G+ +F L+   + ++
Sbjct: 473 GYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIV 532

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVV--GVSLAKKLFMSMGERDIVSWNSMIAGL-----V 194
               ++      + ++D YS+ G++   + L  K+    G      W +++A       V
Sbjct: 533 PTMEHY------SCMVDLYSRAGMLEKAMDLINKMPFPAGA---TIWRTLLAACRVHLNV 583

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           + GEL+ A +L    P+ D+ ++  + + YA AG
Sbjct: 584 QLGELA-AEKLISLQPQ-DSAAYVLLSNIYATAG 615


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/576 (35%), Positives = 312/576 (54%), Gaps = 17/576 (2%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L+  +Q+ A +IK        ++  L++  +    +  A K F +  + D+  +NT+I 
Sbjct: 909  DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS 968

Query: 89   ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN---WFHLVQMIHALIYKCG 145
            +  QN+L  +A   F D+   G+  D FT   +L+AC+  +   +F L   +H    KCG
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 146  YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
               D FV  +LID YSK G   +  A+ L     + D+ SWN+++ G +K  +  +A   
Sbjct: 1029 IINDSFVSTALIDLYSKGG--KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 206  FDEMPER----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWG-Y 255
            F  M E     D ++  T +         K G+   A+ +  K+   N +  S+ V   Y
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI--KLGFNNDLWVSSGVLDMY 1144

Query: 256  SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
             K GDM  A  LF  +     V WT +ISGY E G    A  +Y  M  +G++PD+ T  
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 316  SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
            +++ A +    L  G ++HA++ K  +  +  V  +LVDMY KCGS+ +A  VF  M  +
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 376  DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
             +V WNAML GLA HG  ++AL LF  M+  G  PDK TF+GVL AC+H+G   +  +YF
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324

Query: 436  YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             +M + YGI P++EHY C++D LGR+GR++EA  ++ SMP + +A ++  LLGACR    
Sbjct: 1325 DAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGD 1384

Query: 496  VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
             E A+ V D L+ L  SD   Y +LSNI+AA+  W+ V + R  MK    +K  G S ++
Sbjct: 1385 AETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444

Query: 556  VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            V N+VH F V D+ HP++  IY+ I  L K ++  G
Sbjct: 1445 VKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEG 1480



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 200/465 (43%), Gaps = 64/465 (13%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L   K+  A+I+      D Y+   LI+  + C  +  A +VF+   D D+  +N+++ 
Sbjct: 626  DLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 89   ACVQNSLNA-----QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            A  Q + ++     + FR+F  ++E G      T   LLK C    +  + + +H    K
Sbjct: 686  AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK 745

Query: 144  CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
             G+  D+FV  +L++ Y K G+VG                                 +AR
Sbjct: 746  IGFELDLFVSGALVNIYCKYGLVG---------------------------------QAR 772

Query: 204  RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKD 258
             LFD+MPERDAV WN +L  Y +    + A   F    HR     +  +   ++ G + D
Sbjct: 773  LLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF-HRSGFFPDFSNLHCVIGGVNSD 831

Query: 259  GD------------MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
                            M    FD+     +  W   ++ +   G    A   +  +  + 
Sbjct: 832  VSNNRKRHAEQVKAYAMKMFPFDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 307  LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            +  D  TL+ IL+A   +  L LG ++HA + K  F     V N+L++MY+K G +  A 
Sbjct: 890  IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 367  SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--- 423
              F    + DL+SWN M+   A +    +A+  F  +  +G  PD++T   VL AC+   
Sbjct: 950  KTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGD 1009

Query: 424  HAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
               +   G Q + Y+++   GI+        +IDL  + G++ EA
Sbjct: 1010 EGEYFTLGSQVHVYAIK--CGIINDSFVSTALIDLYSKGGKMDEA 1052


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 280/515 (54%), Gaps = 48/515 (9%)

Query: 126 NGKNWFHLVQ---------MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           N     HL+Q          IH  + K G   D    + L+   +      ++ A+ +F 
Sbjct: 17  NAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFD 76

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-----PER------------------- 212
            +   +   WN+MI G     E  EA  L+  M     P                     
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEE 136

Query: 213 ---------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                          +  + N++L+ Y+K+G++  A  LF+++  R+ VSW++M+ GY+K
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G++EMA  +F+ MP + ++ WT +ISG    G  KEA  L+ +M+ AG+K D+  L+S 
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVST 256

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA+ G+L  G  +HA I K+  + +  +   L+DMYAKCG L+ A+ VF  M +K +
Sbjct: 257 LQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGV 316

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
             W AM+ G A+HG+G +AL  F +M+  G  P++ TF G+L AC+HAG + +    F S
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFES 376

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           MER +G  P +EHYGCM+DLLGR+G LKEA  L+++MPV+PNA IWG LL AC  H  +E
Sbjct: 377 MERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 436

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L +++   LI++     G Y  L++I AA G+WN+ A VR QMK+    K  G S + V+
Sbjct: 437 LGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
              HEF   D+ HP+ ++I  M+  + + L+  G+
Sbjct: 497 GTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGY 531



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 210/439 (47%), Gaps = 53/439 (12%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-----MGLAIKVFN 73
           + L  L +C N+ + +Q+  Q++K  L  D   A KL   LA C       +  A  VF+
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKL---LAFCASPNSGSLAYARTVFD 76

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
            I  P+  ++NT+IR    +    +A  ++  M    V  + +T+PFLLKAC+  +    
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEE 136

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            Q IHA I K G+  +I+  NSL++ YSK G   +  A+ LF  + +RD VSWNSMI G 
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSG--DIKSARLLFDQVDQRDTVSWNSMIDGY 194

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK-----IPHRNIVSW 248
            K GE+  A  +F+ MPER+ +SW +++ G   AG+   A  LF +     I   N+   
Sbjct: 195 TKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALV 254

Query: 249 STM----------------------------VWG------YSKDGDMEMAKLLFDRMPAK 274
           ST+                            + G      Y+K GD+E A  +F +M  K
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEK 314

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
            +  WT +ISGYA  G  +EA   + +M+ AG++P+  T   IL AC+ +GL+     + 
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 335 ASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ 392
            S+ + + FK +      +VD+  + G L  A  +   M  K +   W A+L    +HG 
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 393 GE--KALGLFSRMKDEGFG 409
            E  K +G      D G G
Sbjct: 435 LELGKQIGKILIQVDPGHG 453


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 203/576 (35%), Positives = 312/576 (54%), Gaps = 17/576 (2%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L+  +Q+ A +IK        ++  L++  +    +  A K F +  + D+  +NT+I 
Sbjct: 909  DLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMIS 968

Query: 89   ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN---WFHLVQMIHALIYKCG 145
            +  QN+L  +A   F D+   G+  D FT   +L+AC+  +   +F L   +H    KCG
Sbjct: 969  SYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCG 1028

Query: 146  YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
               D FV  +LID YSK G   +  A+ L     + D+ SWN+++ G +K  +  +A   
Sbjct: 1029 IINDSFVSTALIDLYSKGG--KMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEH 1086

Query: 206  FDEMPER----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWG-Y 255
            F  M E     D ++  T +         K G+   A+ +  K+   N +  S+ V   Y
Sbjct: 1087 FSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAI--KLGFNNDLWVSSGVLDMY 1144

Query: 256  SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
             K GDM  A  LF  +     V WT +ISGY E G    A  +Y  M  +G++PD+ T  
Sbjct: 1145 IKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFA 1204

Query: 316  SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
            +++ A +    L  G ++HA++ K  +  +  V  +LVDMY KCGS+ +A  VF  M  +
Sbjct: 1205 TLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVR 1264

Query: 376  DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
             +V WNAML GLA HG  ++AL LF  M+  G  PDK TF+GVL AC+H+G   +  +YF
Sbjct: 1265 KVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYF 1324

Query: 436  YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             +M + YGI P++EHY C++D LGR+GR++EA  ++ SMP + +A ++  LLGACR    
Sbjct: 1325 DAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGD 1384

Query: 496  VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
             E A+ V D L+ L  SD   Y +LSNI+AA+  W+ V + R  MK    +K  G S ++
Sbjct: 1385 AETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWID 1444

Query: 556  VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            V N+VH F V D+ HP++  IY+ I  L K ++  G
Sbjct: 1445 VKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEG 1480



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 200/465 (43%), Gaps = 64/465 (13%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L   K+  A+I+      D Y+   LI+  + C  +  A +VF+   D D+  +N+++ 
Sbjct: 626  DLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILA 685

Query: 89   ACVQNSLNA-----QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            A  Q + ++     + FR+F  ++E G      T   LLK C    +  + + +H    K
Sbjct: 686  AYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVK 745

Query: 144  CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
             G+  D+FV  +L++ Y K G+VG                                 +AR
Sbjct: 746  IGFELDLFVSGALVNIYCKYGLVG---------------------------------QAR 772

Query: 204  RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKD 258
             LFD+MPERDAV WN +L  Y +    + A   F    HR     +  +   ++ G + D
Sbjct: 773  LLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAF-HRSGFXPDFSNLHCVIGGVNSD 831

Query: 259  GD------------MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
                            M    FD+     +  W   ++ +   G    A   +  +  + 
Sbjct: 832  VSNNRKRHAEQVKAYAMKMFPFDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRST 889

Query: 307  LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            +  D  TL+ IL+A   +  L LG ++HA + K  F     V N+L++MY+K G +  A 
Sbjct: 890  IGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAE 949

Query: 367  SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--- 423
              F    + DL+SWN M+   A +    +A+  F  +  +G  PD++T   VL AC+   
Sbjct: 950  KTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGD 1009

Query: 424  HAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
               +   G Q + Y+++   GI+        +IDL  + G++ EA
Sbjct: 1010 EGEYFTLGSQVHVYAIK--CGIINDSFVSTALIDLYSKGGKMDEA 1052


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/515 (35%), Positives = 280/515 (54%), Gaps = 48/515 (9%)

Query: 126 NGKNWFHLVQ---------MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           N     HL+Q          IH  + K G   D    + L+   +      ++ A+ +F 
Sbjct: 17  NAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFD 76

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-----PER------------------- 212
            +   +   WN+MI G     E  EA  L+  M     P                     
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEE 136

Query: 213 ---------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                          +  + N++L+ Y+K+G++  A  LF+++  R+ VSW++M+ GY+K
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G++EMA  +F+ MP + ++ WT +ISG    G  KEA  L+ +M+ AG+K D+  L+S 
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVST 256

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L ACA+ G+L  G  +HA I K+  + +  +   L+DMYAKCG L+ A+ VF  M +K +
Sbjct: 257 LQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGV 316

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
             W AM+ G A+HG+G +AL  F +M+  G  P++ TF G+L AC+HAG + +    F S
Sbjct: 317 SVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFES 376

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           MER +G  P +EHYGCM+DLLGR+G LKEA  L+++MPV+PNA IWG LL AC  H  +E
Sbjct: 377 MERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLE 436

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           L +++   LI++     G Y  L++I AA G+WN+ A VR QMK+    K  G S + V+
Sbjct: 437 LGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVN 496

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
              HEF   D+ HP+ ++I  M+  + + L+  G+
Sbjct: 497 GTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGY 531



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 136/439 (30%), Positives = 210/439 (47%), Gaps = 53/439 (12%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ-----MGLAIKVFN 73
           + L  L +C N+ + +Q+  Q++K  L  D   A KL   LA C       +  A  VF+
Sbjct: 20  QTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKL---LAFCASPNSGSLAYARTVFD 76

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
            I  P+  ++NT+IR    +    +A  ++  M    V  + +T+PFLLKAC+  +    
Sbjct: 77  RIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEE 136

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            Q IHA I K G+  +I+  NSL++ YSK G   +  A+ LF  + +RD VSWNSMI G 
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSG--DIKSARLLFDQVDQRDTVSWNSMIDGY 194

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK-----IPHRNIVSW 248
            K GE+  A  +F+ MPER+ +SW +++ G   AG+   A  LF +     I   N+   
Sbjct: 195 TKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALV 254

Query: 249 STM----------------------------VWG------YSKDGDMEMAKLLFDRMPAK 274
           ST+                            + G      Y+K GD+E A  +F +M  K
Sbjct: 255 STLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEK 314

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
            +  WT +ISGYA  G  +EA   + +M+ AG++P+  T   IL AC+ +GL+     + 
Sbjct: 315 GVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLF 374

Query: 335 ASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ 392
            S+ + + FK +      +VD+  + G L  A  +   M  K +   W A+L    +HG 
Sbjct: 375 ESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434

Query: 393 GE--KALGLFSRMKDEGFG 409
            E  K +G      D G G
Sbjct: 435 LELGKQIGKILIQVDPGHG 453


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 181/562 (32%), Positives = 316/562 (56%), Gaps = 11/562 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + K++   ++KL    +  +   LI++      +  A  +F+++ +PDV  +N++I  
Sbjct: 211 VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 270

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
           CV N  +     +F+ M   GV  D  T   +L AC       L + +H    K  +  +
Sbjct: 271 CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEE 330

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +   N+L+D YSKCG   ++ A ++F+ MG+  IVSW S+IA  V+ G  S+A  LFDEM
Sbjct: 331 VVFSNTLLDMYSKCG--NLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEM 388

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDM 261
             +    D  +  +I+   A +  ++   ++   +       N+   + ++  Y+K G +
Sbjct: 389 QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 448

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E A+L+F ++P K +V W  +I GY++  +  EA  L+  M++   KPDD T+  +L AC
Sbjct: 449 EEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPAC 507

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G ++H  I +  +  + +V  ALVDMYAKCG L  A  +F+ + KKDL+SW 
Sbjct: 508 AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 567

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+ G  MHG G +A+  F+ M+  G  PD+ +F  +L AC+H+G +++G ++F SM  +
Sbjct: 568 VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNE 627

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+ P++EHY C++DLL R G L +A + ++SMP++P+  IWG LL  CR H+ V+LAE+
Sbjct: 628 CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEK 687

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           V + +  L+  +   Y +L+N++A    W +V  +R +M+K   ++  G S +EV  + +
Sbjct: 688 VAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFN 747

Query: 562 EFSVCDQLHPKSEQIYQMINTL 583
            F   +  HP++++I  +++ L
Sbjct: 748 IFVAGNSKHPQAKKIDVLLSKL 769



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/518 (30%), Positives = 253/518 (48%), Gaps = 22/518 (4%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L   K++ + II   +  D  +  KL+     C  +    K+F+ I +  V L+N L+
Sbjct: 108 KSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLM 167

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               +     ++  +F  MQ+ GV  + +T+  +LK           + +H  + K G+ 
Sbjct: 168 SEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 227

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +  V NSLI +Y K G  GV  A  LF  + E D+VSWNSMI G V  G       +F 
Sbjct: 228 SNTAVVNSLIAAYFKFG--GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFI 285

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDG 259
           +M     E D  +  ++L   A  G ++L   L     +      +V  +T++  YSK G
Sbjct: 286 QMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG 345

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           ++  A  +F +M   T+V WT II+ Y  +G+  +A  L+D+M+  G++PD  T+ SI+ 
Sbjct: 346 NLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVH 405

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA S  L  G  VH+ + K     N  V NAL++MYAKCGS++ A  VF+ +  KD+VS
Sbjct: 406 ACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS 465

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN M+ G + +    +AL LF  M+ + F PD  T   VL AC     +DKG +    + 
Sbjct: 466 WNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHIL 524

Query: 440 RDYGILPQVEHYGC-MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           R  G    + H  C ++D+  + G L  A  L   +P + + I W  ++     H     
Sbjct: 525 RR-GYFSDL-HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHG---F 578

Query: 499 AEEVLDCL--IRLKGSDP--GNYTMLSNIFAATGDWNK 532
             E +     +R+ G +P   +++ + N  + +G  N+
Sbjct: 579 GNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNE 616



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 185/376 (49%), Gaps = 21/376 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL+  + L    +K     +   +  L+   + C  +  A +VF  + D  +  + ++I 
Sbjct: 311 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIA 370

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A V+  L + A  +F +MQ KGV  D +T   ++ AC   +     + +H+ + K G   
Sbjct: 371 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGS 430

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++ V N+LI+ Y+KCG   V  A+ +F  +  +DIVSWN+MI G  +    +EA  LF +
Sbjct: 431 NLPVTNALINMYAKCG--SVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLD 488

Query: 209 MPER---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
           M ++   D ++   +L   A    ++   E+   I  R   S       +V  Y+K G +
Sbjct: 489 MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 548

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
            +A+LLFD +P K L+ WT++I+GY   G   EA   +++M  AG++PD+ +  +IL AC
Sbjct: 549 VLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNAC 608

Query: 322 AESGLLGLGMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGM-TK 374
           + SGLL  G K     N  R +C          C  +VD+ A+ G+L  A      M  K
Sbjct: 609 SHSGLLNEGWKF---FNSMRNECGVEPKLEHYAC--VVDLLARMGNLSKAYKFIESMPIK 663

Query: 375 KDLVSWNAMLYGLAMH 390
            D   W  +L G  +H
Sbjct: 664 PDTTIWGVLLSGCRIH 679



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 194/421 (46%), Gaps = 16/421 (3%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           +Y  +L+ C  K      + +H++I   G   D  +   L+  Y  CG   +   +K+F 
Sbjct: 96  SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCG--DLVQGRKIFD 153

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV----SWNTILDGYAKAGEMNL 232
            +    +  WN +++   K G   E+  LF +M +   V    ++  +L  +A  G++  
Sbjct: 154 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 213

Query: 233 AFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
              +   +       N    ++++  Y K G +E A  LFD +    +V W  +I+G   
Sbjct: 214 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G +     ++ QM   G++ D  TL+S+L ACA  G L LG  +H    K  F      
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N L+DMY+KCG+L+ A  VF  M    +VSW +++      G    A+GLF  M+ +G 
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PD YT   ++ AC  +  +DKG +  +S     G+   +     +I++  + G ++EA 
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKG-RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 452

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-KGSDPGNYTMLSNIFAAT 527
            +   +PV+ + + W T++G    ++   L  E L+  + + K   P + TM   + A  
Sbjct: 453 LVFSKIPVK-DIVSWNTMIGG---YSQNLLPNEALELFLDMQKQFKPDDITMACVLPACA 508

Query: 528 G 528
           G
Sbjct: 509 G 509



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 10/211 (4%)

Query: 283 ISGYAEKGMAKEAARLYDQME--EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           I+ + E G  + A  L  + +  E GL     +  S+L  CAE   L  G +VH+ I   
Sbjct: 68  INKFCEMGDLRNAIELLTKSKSYELGLN----SYCSVLQLCAEKKSLEDGKRVHSVIISN 123

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
               +  +   LV MY  CG L     +F+ +    +  WN ++   A  G   +++ LF
Sbjct: 124 GISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 183

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLG 459
            +M+  G   + YTF  VL      G + +  + + Y ++  +G    V     +I    
Sbjct: 184 KKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV--VNSLIAAYF 241

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           + G ++ A  L   +  EP+ + W +++  C
Sbjct: 242 KFGGVESAHNLFDELS-EPDVVSWNSMINGC 271


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 312/566 (55%), Gaps = 10/566 (1%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL    +K  L+ +  +A  L+S  A C+ +    K+F  +   D+  +N +I  CVQN 
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              QA  +F DMQ+ G+  D+ T   LL A    N F+  + +H  I +     D+F+ +
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           +L+D Y KC    V +A+ ++ S    D+V  ++MI+G V  G   EA ++F  + E+  
Sbjct: 388 ALVDIYFKCR--AVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI 445

Query: 213 --DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
             +AV+  ++L   A    M L  EL     +          S ++  Y+K G ++++  
Sbjct: 446 RPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F ++ AK  V W  +IS +A+ G  +EA  L+ +M   G+K  + T+ S+L+ACA    
Sbjct: 506 IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPA 565

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           +  G ++H  + K   + +    +AL+DMY KCG+L+ A  VF  M +K+ VSWN+++  
Sbjct: 566 IYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIAS 625

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
              +G  ++++ L   M++EGF  D  TF+ ++ AC HAG + +G++ F  M  +Y I P
Sbjct: 626 YGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAP 685

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           ++EH+ CM+DL  R+G+L +A+ L+  MP +P+A IWG LL ACR H  VELAE     L
Sbjct: 686 RMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQEL 745

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
            +L   + G Y ++SNI A  G W+ V+ VR  MK T+ QK  G S V+V+N  H F   
Sbjct: 746 FKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAA 805

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGH 592
           D+ HP SE IY  + ++  +L+  GH
Sbjct: 806 DKSHPDSEDIYMSLKSILLELREEGH 831



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 229/456 (50%), Gaps = 14/456 (3%)

Query: 43  LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           L L  D ++   LI   A    +  A +VF+ + + D  L+N ++   V+    + A  +
Sbjct: 175 LGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVEL 234

Query: 103 FLDMQEKGVFTDNFTYP-FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           F DM+  G   +  T   FL  +    + F  VQ+ H L  K G   ++ V N+L+  Y+
Sbjct: 235 FGDMRASGCEPNFATLACFLSVSATESDLFFGVQL-HTLAVKYGLESEVAVANTLVSMYA 293

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSW 217
           KC  +      KLF  M   D+V+WN MI+G V+ G + +A  LF +M +     D+V+ 
Sbjct: 294 KCKCLDDGW--KLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 218 NTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
            ++L         N   EL   I     H ++   S +V  Y K   + MA+ ++D   A
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
             +V  + +ISGY   GM++EA +++  + E G++P+   + S+L ACA    + LG ++
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H+   K  ++    V +AL+DMYAKCG LD +  +F+ ++ KD V+WN+M+   A +G+ 
Sbjct: 472 HSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEP 531

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           E+AL LF  M  EG      T   VL AC     I  G +  + +     I   +     
Sbjct: 532 EEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKE-IHGVVIKGPIRADLFAESA 590

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +ID+ G+ G L+ A R+ +SMP E N + W +++ +
Sbjct: 591 LIDMYGKCGNLEWAHRVFESMP-EKNEVSWNSIIAS 625



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 192/386 (49%), Gaps = 12/386 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L      NQ K+L   I++  +  D ++   L+     CR + +A  V++  +  DV
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            + +T+I   V N ++ +A ++F  + E+G+  +      +L AC       L Q +H+ 
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  Y G  +V ++L+D Y+KCG   + L+  +F  +  +D V+WNSMI+   + GE  
Sbjct: 475 ALKNAYEGRCYVESALMDMYAKCG--RLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPE 532

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI---PHR-NIVSWSTMV 252
           EA  LF EM     +   V+ +++L   A    +    E+   +   P R ++ + S ++
Sbjct: 533 EALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALI 592

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G++E A  +F+ MP K  V W  II+ Y   G+ KE+  L   M+E G K D  
Sbjct: 593 DMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHV 652

Query: 313 TLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T +++++ACA +G +  G+++   +  +Y+          +VD+Y++ G LD AM +   
Sbjct: 653 TFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVD 712

Query: 372 MT-KKDLVSWNAMLYGLAMHGQGEKA 396
           M  K D   W A+L+   +H   E A
Sbjct: 713 MPFKPDAGIWGALLHACRVHRNVELA 738



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 227/491 (46%), Gaps = 21/491 (4%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQ-RDPYIAPKLISSLALCRQMGLAIKVF 72
           RRLL   L+      +L+   Q+  + +   L   D  +  +L+    L R+   A+ VF
Sbjct: 40  RRLLA-VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVF 98

Query: 73  NDIQDPDVHL---YNTLIRACVQNSLNAQAFRVFLDM--QEKGVFTDNFTYPFLLKACNG 127
           + +          +N LIR          A   +L M         D+ T+P+++K+C  
Sbjct: 99  SSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA 158

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L +++H      G  GD+FV ++LI  Y+  G++    A+++F  M ERD V WN
Sbjct: 159 LGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWD--ARQVFDGMAERDCVLWN 216

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
            M+ G VK G +S A  LF +M     E +  +    L   A   ++    +L       
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 244 NIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            + S     +T+V  Y+K   ++    LF  MP   LV W  +ISG  + G   +A  L+
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M+++G++PD  TL+S+L A  +      G ++H  I +     +  + +ALVD+Y KC
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC 396

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
            ++  A SV++     D+V  + M+ G  ++G  ++A+ +F  + ++G  P+      VL
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
            AC     +  G + + Y+++  Y     VE    ++D+  + GRL  +  +   +  + 
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLSHYIFSKISAK- 513

Query: 479 NAIIWGTLLGA 489
           + + W +++ +
Sbjct: 514 DEVTWNSMISS 524



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 8/269 (2%)

Query: 264 AKLLFDRMP---AKTLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISIL 318
           A  +F  +P   A   +PW  +I G    G  + A   Y +M    +   PD  T   ++
Sbjct: 94  AVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVV 153

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            +CA  G + LG  VH +        +  V +AL+ MYA  G L +A  VF+GM ++D V
Sbjct: 154 KSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCV 213

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            WN M+ G    G    A+ LF  M+  G  P+  T    L        +  GVQ  +++
Sbjct: 214 LWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQ-LHTL 272

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
              YG+  +V     ++ +  +   L +  +L   MP + + + W  ++  C ++  V+ 
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVDQ 331

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           A  +L C ++  G  P + T++S + A T
Sbjct: 332 A-LLLFCDMQKSGIRPDSVTLVSLLPALT 359



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 311 DGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  L+++L  C     L LG++VH  ++       +T +   LV MY       +A++VF
Sbjct: 39  DRRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVF 98

Query: 370 NGMTKKD---LVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTH 424
           + + +      + WN ++ GL M G    AL  + +M        PD +TF  V+ +C  
Sbjct: 99  SSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA 158

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G I  G +  +   R  G+   +     +I +    G L +A ++   M  E + ++W 
Sbjct: 159 LGAIALG-RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWN 216

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            ++    K  +V  A E+   + R  G +P   T+   +  +  + +    V+L    T 
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDM-RASGCEPNFATLACFLSVSATESDLFFGVQLH---TL 272

Query: 545 AQKPSGASSVEVDNEV 560
           A K    S V V N +
Sbjct: 273 AVKYGLESEVAVANTL 288


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 302/588 (51%), Gaps = 56/588 (9%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +I+  A   Q   A KVF  +   D+  YN+++    QN     A + F  M E+ V + 
Sbjct: 148 MIAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSW 207

Query: 115 NFTYPFLLKACNGKNWFHLVQMI------HALIYKCGY--FGDIFVPNSLIDSYSKCGVV 166
           N      +K+ +  + + L + I        +   CG   +G +     L D      VV
Sbjct: 208 NLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVV 267

Query: 167 G-------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
                         V  A KLF  M  +D VSW ++I G ++ G+L EAR+++++MP   
Sbjct: 268 SWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKD 327

Query: 211 ----------------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
                                         D V WN+++ GY+++G M+ A  LF ++P 
Sbjct: 328 ITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPI 387

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           +N VSW+TM+ GY++ G M+ A  +F  M  K +V W  +I+G+ +  +  +A +    M
Sbjct: 388 KNSVSWNTMISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMM 447

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
            + G KPD  T    L+ACA    L +G ++H  I K  +  +  V NAL+ MYAKCG +
Sbjct: 448 GKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRV 507

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
            +A  VF  +   DL+SWN+++ G A++G   KA   F +M  E   PD+ TF+G+L AC
Sbjct: 508 QSAEQVFRDIECVDLISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSAC 567

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +HAG  ++G+  F  M  D+ I P  EHY C++DLLGR GRL+EA   V+ M V+ NA +
Sbjct: 568 SHAGLANQGLDIFKCMIEDFAIEPLAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGL 627

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG+LLGACR H  +EL     + L  L+  +  NY  LSN+ A  G W +V  VR+ M+ 
Sbjct: 628 WGSLLGACRVHKNLELGRFAAERLFELEPHNASNYITLSNMHAEAGRWEEVERVRMLMRG 687

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCD--QLHPKSEQIYQMINTLGKDLK 588
            RA K  G S +EV N++  F   D  +L PK+ QI  ++NTL   ++
Sbjct: 688 KRAGKQPGCSWIEVQNQIQHFLSHDPAKLRPKNIQI--ILNTLAAHMR 733



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 234/487 (48%), Gaps = 65/487 (13%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS LA   ++  A ++F+ +   ++  +NT+I   + N++  +A  +F  M E+    D
Sbjct: 54  MISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPER----D 109

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           NF++  ++     K      + +  L+       D    N++I  Y+K G    + AKK+
Sbjct: 110 NFSWALMITCYTRKGKLEKARELLELVPDKL---DTACWNAMIAGYAKKG--QFNDAKKV 164

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
           F  M  +D+VS+NSM+AG  + G++  A + F+ M ER+ VSWN ++ GY K+G+++ A+
Sbjct: 165 FEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAW 224

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           +LFEKIP+ N VSW TM+ G +K G M  A+ LFDRMP+K +V W  +I+ Y +     E
Sbjct: 225 QLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDE 284

Query: 295 AARLYDQMEEAGL--------------KPDDGTLISILAACAE--------SGLLGLGMK 332
           A +L+ +M                   K D+   +     C +        SGL+  G  
Sbjct: 285 AVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRI 344

Query: 333 VHASINKYRFKCNTNVC-NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
             A     R   +  VC N+++  Y++ G +D A+++F  M  K+ VSWN M+ G A  G
Sbjct: 345 DEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAG 404

Query: 392 QGEKALGLFSRMKD-------------------------------EGFGPDKYTFVGVLC 420
           Q ++A  +F  M++                               EG  PD+ TF   L 
Sbjct: 405 QMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLS 464

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC +   +  G Q    + +  G +  +     +I +  + GR++ A ++ + +    + 
Sbjct: 465 ACANLAALQVGNQLHEYILKS-GYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIEC-VDL 522

Query: 481 IIWGTLL 487
           I W +L+
Sbjct: 523 ISWNSLI 529



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 190/410 (46%), Gaps = 65/410 (15%)

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           F  N  I    K G   V  A ++F +M  +++V++NSMI+ L K   + +AR+LFD+M 
Sbjct: 18  FNHNRQIIQLGKLG--KVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDARQLFDQMS 75

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
            R+ VSWNT++ GY     +  A ELF+ +P R+  SW+ M+  Y++ G +E A+ L + 
Sbjct: 76  LRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLEL 135

Query: 271 MPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           +P K     W  +I+GYA+KG   +A ++++QM    L   +    S+LA   ++G + L
Sbjct: 136 VPDKLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVSYN----SMLAGYTQNGKMHL 191

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
            ++   S+ +     N    N +V  Y K G L +A  +F  +   + VSW  ML GLA 
Sbjct: 192 ALQFFESMTER----NVVSWNLMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAK 247

Query: 390 HGQGEKALGLFSRMK--------------------DEGFG-------PDKYTFVGVLCAC 422
           +G+  +A  LF RM                     DE           D  ++  ++   
Sbjct: 248 YGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGY 307

Query: 423 THAGFIDKGVQYFYSME-RDY-------------GILPQVEH------------YGCMID 456
              G +D+  Q +  M  +D              G + + +             +  MI 
Sbjct: 308 IRVGKLDEARQVYNQMPCKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIA 367

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
              RSGR+ EAL L + MP++ N++ W T++    +   ++ A E+   +
Sbjct: 368 GYSRSGRMDEALNLFRQMPIK-NSVSWNTMISGYAQAGQMDRATEIFQAM 416



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 161/330 (48%), Gaps = 19/330 (5%)

Query: 177 SMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
           S+GE  +   + N  I  L K G++ EA R+F  M  ++ V++N+++   AK   +  A 
Sbjct: 9   SIGEAGKHAFNHNRQIIQLGKLGKVEEAIRIFFNMTHKNLVTYNSMISVLAKNARIRDAR 68

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           +LF+++  RN+VSW+TM+ GY  +  +E A  LFD MP +    W ++I+ Y  KG  ++
Sbjct: 69  QLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEK 128

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L + + +   K D     +++A  A+ G      KV   +            N+++ 
Sbjct: 129 ARELLELVPD---KLDTACWNAMIAGYAKKGQFNDAKKVFEQMPAKDLVS----YNSMLA 181

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            Y + G +  A+  F  MT++++VSWN M+ G    G    A  LF ++ +    P+  +
Sbjct: 182 GYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGDLSSAWQLFEKIPN----PNAVS 237

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           +V +LC     G + +  + F  M         V  +  MI    +  ++ EA++L + M
Sbjct: 238 WVTMLCGLAKYGKMAEARELFDRMPS-----KNVVSWNAMIATYVQDLQVDEAVKLFKKM 292

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           P   +++ W T++    +   ++ A +V +
Sbjct: 293 P-HKDSVSWTTIINGYIRVGKLDEARQVYN 321



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 79/180 (43%), Gaps = 18/180 (10%)

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L LG++      K+ F  N  +         K G ++ A+ +F  MT K+LV++N+M+  
Sbjct: 3   LKLGIRSIGEAGKHAFNHNRQIIQ-----LGKLGKVEEAIRIFFNMTHKNLVTYNSMISV 57

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LA + +   A  LF +M             G L    H   +++  + F        ++P
Sbjct: 58  LAKNARIRDARQLFDQMSLRNLVSWNTMIAGYL----HNNMVEEASELF-------DVMP 106

Query: 447 QVEHY--GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           + +++    MI    R G+L++A  L++ +P + +   W  ++    K      A++V +
Sbjct: 107 ERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAMIAGYAKKGQFNDAKKVFE 166



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C NL   +   QL   I+K     D ++   LI+  A C ++  A +VF DI+  D+
Sbjct: 463 LSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDL 522

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
             +N+LI     N    +AF+ F  M  + V  D  T+  +L AC+
Sbjct: 523 ISWNSLISGYALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACS 568


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 153/374 (40%), Positives = 250/374 (66%)

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           P+  A++ N ++D Y K G+M+ A++++E++  R+ VSW++++ G+ + G M+ A+ +FD
Sbjct: 137 PKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFD 196

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
            MP +T+V WT +I+GYA  G   +A  ++ +M+  G++PD+ ++IS+L ACA+ G L +
Sbjct: 197 EMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEV 256

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G  +H    K  F  N  V NALV+MYAKCG +D A  +FN M +KD++SW+ M+ GLA 
Sbjct: 257 GKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLAN 316

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG+G  A+ +F  M+  G  P+  TFVGVL AC HAG  ++G++YF  M  DY + PQ+E
Sbjct: 317 HGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIE 376

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HYGC++DLLGRSG++++AL  +  MP++P++  W +LL +CR H+ +E+A   ++ L++L
Sbjct: 377 HYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKL 436

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  + GNY +L+NI+A    W  V+NVR  ++  R +K  G S +EV+N V EF   D  
Sbjct: 437 EPEESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSGDDS 496

Query: 570 HPKSEQIYQMINTL 583
            P S++++ ++  L
Sbjct: 497 KPFSQEVFWILKGL 510



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 124/426 (29%), Positives = 207/426 (48%), Gaps = 44/426 (10%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R L    +  L  C  + + K++ A I+KL L +  ++  K++        +  A  +F 
Sbjct: 4   RELENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQ 63

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFH 132
            +++P+V  YN +IR    N  +  A  VF  M   K    D FT+PF++K+C G     
Sbjct: 64  QLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRR 123

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           L Q +HA + K G        N+LID Y+KCG   +S A +++  M ERD VSWNS+I+G
Sbjct: 124 LGQQVHAHVCKFGPKTHAITENALIDMYTKCG--DMSGAYQVYEEMTERDAVSWNSLISG 181

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP----------- 241
            V+ G++  AR +FDEMP R  VSW T+++GYA+ G    A  +F ++            
Sbjct: 182 HVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISV 241

Query: 242 -------------------H---------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
                              H         +N   ++ +V  Y+K G ++ A  LF++M  
Sbjct: 242 ISVLPACAQLGALEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIE 301

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           K ++ W+ +I G A  G    A R+++ M++AG+ P+  T + +L+ACA +GL   G++ 
Sbjct: 302 KDVISWSTMIGGLANHGKGYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRY 361

Query: 334 HASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHG 391
              +   Y  +        LVD+  + G ++ A+     M  + D  +WN++L    +H 
Sbjct: 362 FDVMRVDYHLEPQIEHYGCLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHH 421

Query: 392 QGEKAL 397
             E A+
Sbjct: 422 NLEIAV 427



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 134/308 (43%), Gaps = 41/308 (13%)

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILA 319
           ++ A ++F ++    +  +  II  Y        A  +++QM       PD  T   ++ 
Sbjct: 55  VDYATMIFQQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIK 114

Query: 320 ACAESGLL--GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           +CA  GLL   LG +VHA + K+  K +    NAL+DMY KCG +  A  V+  MT++D 
Sbjct: 115 SCA--GLLCRRLGQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDA 172

Query: 378 VSWNAMLYGLAMHGQGEK-------------------------------ALGLFSRMKDE 406
           VSWN+++ G    GQ +                                ALG+F  M+  
Sbjct: 173 VSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVV 232

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  PD+ + + VL AC   G ++ G ++ +      G L     +  ++++  + G + E
Sbjct: 233 GIEPDEISVISVLPACAQLGALEVG-KWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDE 291

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A  L   M +E + I W T++G    H     A  V + + +  G  P   T +  + A 
Sbjct: 292 AWGLFNQM-IEKDVISWSTMIGGLANHGKGYAAIRVFEDMQK-AGVTPNGVTFVGVLSAC 349

Query: 527 --TGDWNK 532
              G WN+
Sbjct: 350 AHAGLWNE 357


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 197/609 (32%), Positives = 304/609 (49%), Gaps = 73/609 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++    ++  +  D  +A  L+   A C +   A ++F  +Q  D+  ++ +I 
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIA 403

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A VQ     +A  +F +MQ + +  +  T   +L AC   +   L + IH    K     
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDS 463

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+    +L+  Y+KCG    +L                                   F+ 
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTT---------------------------------FNR 490

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------------------VSWS 249
           M  RD V+WN++++GYA+ G+   A ++F K+    I                   +   
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 250 TMVWG--------------------YSKDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAE 288
           T + G                    Y+K G +  A+ LF++    K  V W +II+ Y +
Sbjct: 551 TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G AKEA   + QM      P+  T +S+L A A       GM  HA I +  F  NT V
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N+L+DMYAKCG LD +  +FN M  KD VSWNAML G A+HG G++A+ LFS M++   
Sbjct: 671 GNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
             D  +FV VL AC HAG +++G + F+SM   Y I P +EHY CM+DLLGR+G   E L
Sbjct: 731 QIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             ++ MPVEP+A +WG LLG+CR H+ V+L E  LD L++L+  +P ++ +LS+I+A +G
Sbjct: 791 GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W      R +M     +K  G S VE+ N+VH F V D+ HP+ E ++ + NTL + ++
Sbjct: 851 RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 589 PVGHAAKLS 597
            +G+    S
Sbjct: 911 KIGYVPDRS 919



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 251/508 (49%), Gaps = 22/508 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  CK+LN   Q+ AQII    +    I   LI+  +L  +  LA  VF+   +P   L+
Sbjct: 39  LSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDLARSVFDSTPNPSRILW 97

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N++IRA  ++    +A  ++  M EKG+  D +T+ F+LKAC G          H  I +
Sbjct: 98  NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+F+   L+D YSK G   +  A+++F  M +RD+V+WN+MIAGL +  +  EA 
Sbjct: 158 RGLERDVFIGAGLVDMYSKMG--DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAV 215

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST--MVWGYSK 257
             F  M     E  +VS   +  G  K   + L   +   +  R+  S  +  ++  YSK
Sbjct: 216 DFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSK 275

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GD+++A+ +FD+M  +  V W  +++GYA  G   E   L+D+M+   ++ +  + +S 
Sbjct: 276 CGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSA 335

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
             A AE+  L  G ++H    + R   +  V   L+ MYAKCG  + A  +F G+  +DL
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFY 436
           V+W+A++  L   G  E+AL LF  M+++   P++ T + +L AC     +  G   + +
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK---- 492
           +++ D      +     ++ +  + G    AL     M    + + W +L+    +    
Sbjct: 456 TVKADMD--SDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGDP 512

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +NA+++  +     +RL   +P   TM+
Sbjct: 513 YNAIDMFYK-----LRLSAINPDAGTMV 535



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/513 (28%), Positives = 243/513 (47%), Gaps = 28/513 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL +      +I +  L+RD +I   L+   +    +  A +VF+ +   DV  +N +I 
Sbjct: 144 NLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA 203

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFT----YPFLLKACNGKNWFHLVQMIHALIYKC 144
              Q+    +A   F  MQ  GV   + +    +P + K  N      L + IH  +++ 
Sbjct: 204 GLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSN----IELCRSIHGYVFRR 259

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
            +     V N LID YSKCG V V  A+++F  M ++D VSW +M+AG    G   E   
Sbjct: 260 DFSSA--VSNGLIDLYSKCGDVDV--ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 205 LFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELF-----EKIPHRNIVSWSTMVWGY 255
           LFD+M       + VS  +     A+  ++    E+      ++I    +V+   MV  Y
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVM-Y 374

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K G+ E AK LF  +  + LV W+ II+   + G  +EA  L+ +M+   +KP+  TL+
Sbjct: 375 AKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLM 434

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           SIL ACA+  LL LG  +H    K     + +   ALV MYAKCG    A++ FN M+ +
Sbjct: 435 SILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR 494

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+V+WN+++ G A  G    A+ +F +++     PD  T VGV+ AC     +D+G    
Sbjct: 495 DIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT-CI 553

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
           + +    G          +ID+  + G L  A  L        + + W  ++ A  ++  
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613

Query: 496 VELAEEVLDCL--IRLKGSDPGNYTMLSNIFAA 526
              A+E +     +RL+   P + T +S + AA
Sbjct: 614 ---AKEAISSFHQMRLENFHPNSVTFVSVLPAA 643



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 15/224 (6%)

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L++C     L   +++HA I    FK + ++ + L+++Y+     D A SVF+      
Sbjct: 38  LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 93

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            + WN+M+       Q  +AL ++  M ++G  PDKYTF  VL ACT A  + +GV +  
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            ++R  G+   V     ++D+  + G LK A  +   MP + + + W  ++    +    
Sbjct: 154 EIDRR-GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQS--- 208

Query: 497 ELAEEVLDCL--IRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           E   E +D    ++L G +P + ++L N+F       K++N+ L
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLL-NLFPGIC---KLSNIEL 248


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 166/380 (43%), Positives = 251/380 (66%), Gaps = 2/380 (0%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E D  +   +LD Y K G + LA +LF+++P R + +W+ M+ G+++ GDM++A  LF  
Sbjct: 115 EPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRL 174

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGL 329
           MP++ +V WT +ISGY+      EA  L+ +ME E G+ P+  TL SI  A A  G L +
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEI 234

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLA 388
           G +V A   K  F  N  V NA+++MYAKCG +D A  VFN + + ++L SWN+M+ GLA
Sbjct: 235 GQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLA 294

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG+  K L L+ +M  EG  PD  TFVG+L ACTH G ++KG   F SM   + I+P++
Sbjct: 295 VHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKL 354

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHYGCM+DLLGR+G+L+EA  ++Q MP++P+++IWG LLGAC  H+ VELAE   + L  
Sbjct: 355 EHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFA 414

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L+  +PGNY +LSNI+A+ G W+ VA +R  MK ++  K +G S +E   ++H+F V D+
Sbjct: 415 LEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHKFIVEDR 474

Query: 569 LHPKSEQIYQMINTLGKDLK 588
            HP+S +I+ +++ + + +K
Sbjct: 475 SHPESNEIFALLDGVYEMIK 494



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 189/437 (43%), Gaps = 51/437 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + Q KQ+    ++  + +   +  KL+        +  A KV +    P + LYN LI+A
Sbjct: 1   MRQVKQIHGYTLRNGIDQTKILIEKLLE----IPNLHYAHKVLHHSPKPTLFLYNKLIQA 56

Query: 90  CVQNSLNA-QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              +  +  Q F ++  M       +  T+ FL  AC   +   L QM+H    K G+  
Sbjct: 57  YSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEP 116

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+F   +L+D Y+K G   + LA+KLF  M  R + +WN+M+AG  + G++  A  LF  
Sbjct: 117 DLFAATALLDMYTKVGT--LELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRL 174

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH-------------------------- 242
           MP R+ VSW T++ GY+++ +   A  LF ++                            
Sbjct: 175 MPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEI 234

Query: 243 --------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA-KTLVPWTIIISGYA 287
                         +N+   + ++  Y+K G +++A  +F+ + + + L  W  +I G A
Sbjct: 235 GQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLA 294

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNT 346
             G   +  +LYDQM   G  PDD T + +L AC   G++  G  +  S+   +      
Sbjct: 295 VHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKL 354

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKA-LGLFSRMK 404
                +VD+  + G L  A  V   M  K D V W A+L   + H   E A +   S   
Sbjct: 355 EHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFA 414

Query: 405 DEGFGPDKYTFVGVLCA 421
            E + P  Y  +  + A
Sbjct: 415 LEPWNPGNYVILSNIYA 431



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/301 (21%), Positives = 120/301 (39%), Gaps = 35/301 (11%)

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK-EAARLYDQMEEAGLKPDDGTLISIL 318
           ++  A  +    P  TL  +  +I  Y+     + +   LY QM      P+  T   + 
Sbjct: 31  NLHYAHKVLHHSPKPTLFLYNKLIQAYSSHPQHQHQCFSLYSQMLLHSFLPNQHTFNFLF 90

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +AC       LG  +H    K  F+ +     AL+DMY K G+L+ A  +F+ M  + + 
Sbjct: 91  SACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQMPVRGVP 150

Query: 379 SWNAMLYGLAMHGQGE-------------------------------KALGLFSRMKDE- 406
           +WNAM+ G A  G  +                               +ALGLF RM+ E 
Sbjct: 151 TWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEK 210

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  P+  T   +  A  + G ++ G Q   +  R  G    +     ++++  + G++  
Sbjct: 211 GMMPNAVTLASIFPAFANLGALEIG-QRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDV 269

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A ++   +    N   W +++     H       ++ D ++  +G+ P + T +  + A 
Sbjct: 270 AWKVFNEIGSLRNLCSWNSMIMGLAVHGECCKTLKLYDQMLG-EGTSPDDVTFVGLLLAC 328

Query: 527 T 527
           T
Sbjct: 329 T 329


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 195/581 (33%), Positives = 311/581 (53%), Gaps = 10/581 (1%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N+   +Q+ A ++++   +D + A  L+       ++ +A  +F  + D DV  +N LI
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV N  + +A  + L M+  G+  + FT   +LKAC+G   F L + IH  + K    
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD 335

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D ++   L+D Y+K   +    A+K+F  M  RD++  N++I+G   GG   EA  LF 
Sbjct: 336 SDDYIGVGLVDMYAKNHFL--DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFY 393

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDG 259
           E+ +     +  +   +L   A     +   ++         +  + +V G    Y K  
Sbjct: 394 ELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCS 453

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +  A  +F+   +  ++  T +I+  ++    + A +L+ +M   GL+PD   L S+L 
Sbjct: 454 CLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA       G +VHA + K +F  +    NALV  YAKCGS+++A   F+ + ++ +VS
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS 573

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W+AM+ GLA HG G++AL LF RM DEG  P+  T   VLCAC HAG +D+  +YF SM+
Sbjct: 574 WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             +GI    EHY CMIDLLGR+G+L +A+ LV SMP + NA IWG LLGA R H   EL 
Sbjct: 634 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELG 693

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +   + L  L+    G + +L+N +A+ G WN+VA VR  MK +  +K    S +EV ++
Sbjct: 694 KLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDK 753

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           VH F V D+ HP +++IY  +  LG  +   G    +  ++
Sbjct: 754 VHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDL 794



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 236/501 (47%), Gaps = 16/501 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQN 93
           Q+ A  +      D ++A  L++       M  A +VFN+   + +   +N L+ A V+N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                A +VF +M   G+    F +  ++ AC G       + +HA++ + GY  D+F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+D Y K G   V +A  +F  M + D+VSWN++I+G V  G    A  L  +M    
Sbjct: 241 NALVDMYMKMG--RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 214 AV----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAK 265
            V    + ++IL   + AG  +L  ++   +   N  S   +  G    Y+K+  ++ A+
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD M  + L+    +ISG +  G   EA  L+ ++ + GL  +  TL ++L + A   
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
                 +VHA   K  F  + +V N L+D Y KC  L +A  VF   +  D+++  +M+ 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
            L+    GE A+ LF  M  +G  PD +    +L AC      ++G Q + + ++R +  
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-- 536

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +        ++    + G +++A     S+P E   + W  ++G   +H   + A E+  
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 505 CLIRLKGSDPGNYTMLSNIFA 525
            ++  +G +P + TM S + A
Sbjct: 596 RMVD-EGINPNHITMTSVLCA 615



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 136/527 (25%), Positives = 223/527 (42%), Gaps = 109/527 (20%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           LIS  + CR+   A + F++I DP    +++L+ A   N L   A + F  M+ +GV  +
Sbjct: 43  LISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            F  P +LK         L   +HA+    G+  D+FV N+L+  Y   G   +  A+++
Sbjct: 103 EFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF--MDDARRV 157

Query: 175 FMSM-GERDIVSWNSMIAGLVKGGELSEARRLFDEMP----------------------- 210
           F     ER+ VSWN +++  VK  +  +A ++F EM                        
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 211 ----------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                           ++D  + N ++D Y K G +++A  +FEK+P  ++VSW+ +   
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNAL--- 274

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
                                       ISG    G    A  L  QM+ +GL P+  TL
Sbjct: 275 ----------------------------ISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            SIL AC+ +G   LG ++H  + K     +  +   LVDMYAK   LD+A  VF+ M  
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFH 366

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL--CACTHAGFIDKGV 432
           +DL+  NA++ G +  G+ ++AL LF  ++ EG G ++ T   VL   A   A    + V
Sbjct: 367 RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQV 426

Query: 433 Q-------YFYSMERDYGILPQVEHYGC---------------------MIDLLGRSGRL 464
                   + +      G++       C                     MI  L +    
Sbjct: 427 HALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHG 486

Query: 465 KEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           + A++L   M    +EP+  +  +LL AC   +A E  ++V   LI+
Sbjct: 487 EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 161/374 (43%), Gaps = 43/374 (11%)

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI---------------- 245
           ARR FDE+P+   VSW++++  Y+  G    A + F  +    +                
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 246 ------VSWSTMVWGYSKD--------------GDMEMAKLLFDRMPA-KTLVPWTIIIS 284
                 V    M  G+  D              G M+ A+ +F+   + +  V W  ++S
Sbjct: 116 ARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMS 175

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
            Y +     +A +++ +M  +G++P +     ++ AC  S  +  G +VHA + +  +  
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK 235

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +    NALVDMY K G +D A  +F  M   D+VSWNA++ G  ++G   +A+ L  +MK
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 295

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
             G  P+ +T   +L AC+ AG  D G Q    M +           G ++D+  ++  L
Sbjct: 296 YSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFL 354

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNI 523
            +A ++   M    + I+   L+  C  H      +E L     L+    G N T L+ +
Sbjct: 355 DDARKVFDWM-FHRDLILCNALISGC-SHGGRH--DEALSLFYELRKEGLGVNRTTLAAV 410

Query: 524 FAATGDWNKVANVR 537
             +T      +  R
Sbjct: 411 LKSTASLEAASTTR 424



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    +  + T+Q+ A  +K+    D ++   LI S   C  +  A +VF 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +    D+    ++I A  Q      A ++F++M  KG+  D F    LL AC   + +  
Sbjct: 464 ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 523

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D F  N+L+ +Y+KCG   +  A+  F S+ ER +VSW++MI GL
Sbjct: 524 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCG--SIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 194 VKGGE-----------------------------------LSEARRLFDEMPE-----RD 213
            + G                                    + EA+R F+ M E     R 
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              ++ ++D   +AG+++ A EL   +P + N   W  ++       D E+ KL    LF
Sbjct: 642 EEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLF 701

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  E A++   M+++ +K +
Sbjct: 702 ILEPEKSGTH-VLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 144/343 (41%), Gaps = 60/343 (17%)

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
           A L+K G L+  R              N ++  Y+K      A   F++IP    VSWS+
Sbjct: 28  ASLLKSGSLASFR--------------NHLISFYSKCRRPCCARRFFDEIPDPCHVSWSS 73

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           +V  YS +                               G+ + A + +  M   G+  +
Sbjct: 74  LVTAYSNN-------------------------------GLPRSAIQAFHGMRAEGVCCN 102

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           +  L  +L    ++    LG +VHA      F  +  V NALV MY   G +D+A  VFN
Sbjct: 103 EFALPVVLKCVPDA---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 371 -GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
              ++++ VSWN ++     + Q   A+ +F  M   G  P ++ F  V+ ACT +  I+
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G Q  ++M    G    V     ++D+  + GR+  A  + + MP + + + W  L+  
Sbjct: 220 AGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 490 C----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           C      H A+EL  +     ++  G  P  +T+ S + A +G
Sbjct: 278 CVLNGHDHRAIELLLQ-----MKYSGLVPNVFTLSSILKACSG 315


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 195/581 (33%), Positives = 311/581 (53%), Gaps = 10/581 (1%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N+   +Q+ A ++++   +D + A  L+       ++ +A  +F  + D DV  +N LI
Sbjct: 216 RNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALI 275

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
             CV N  + +A  + L M+  G+  + FT   +LKAC+G   F L + IH  + K    
Sbjct: 276 SGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANAD 335

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D ++   L+D Y+K   +    A+K+F  M  RD++  N++I+G   GG   EA  LF 
Sbjct: 336 SDDYIGVGLVDMYAKNHFL--DDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFY 393

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDG 259
           E+ +     +  +   +L   A     +   ++         +  + +V G    Y K  
Sbjct: 394 ELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCS 453

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +  A  +F+   +  ++  T +I+  ++    + A +L+ +M   GL+PD   L S+L 
Sbjct: 454 CLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLN 513

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA       G +VHA + K +F  +    NALV  YAKCGS+++A   F+ + ++ +VS
Sbjct: 514 ACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS 573

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           W+AM+ GLA HG G++AL LF RM DEG  P+  T   VLCAC HAG +D+  +YF SM+
Sbjct: 574 WSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             +GI    EHY CMIDLLGR+G+L +A+ LV SMP + NA IWG LLGA R H   EL 
Sbjct: 634 EMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELG 693

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +   + L  L+    G + +L+N +A+ G WN+VA VR  MK +  +K    S +EV ++
Sbjct: 694 KLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDK 753

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           VH F V D+ HP +++IY  +  LG  +   G    +  ++
Sbjct: 754 VHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDL 794



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/501 (26%), Positives = 236/501 (47%), Gaps = 16/501 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQN 93
           Q+ A  +      D ++A  L++       M  A +VFN+   + +   +N L+ A V+N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                A +VF +M   G+    F +  ++ AC G       + +HA++ + GY  D+F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+D Y K G   V +A  +F  M + D+VSWN++I+G V  G    A  L  +M    
Sbjct: 241 NALVDMYMKMG--RVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG 298

Query: 214 AV----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKDGDMEMAK 265
            V    + ++IL   + AG  +L  ++   +   N  S   +  G    Y+K+  ++ A+
Sbjct: 299 LVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD M  + L+    +ISG +  G   EA  L+ ++ + GL  +  TL ++L + A   
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
                 +VHA   K  F  + +V N L+D Y KC  L +A  VF   +  D+++  +M+ 
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
            L+    GE A+ LF  M  +G  PD +    +L AC      ++G Q + + ++R +  
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQF-- 536

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +        ++    + G +++A     S+P E   + W  ++G   +H   + A E+  
Sbjct: 537 MSDAFAGNALVYTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 505 CLIRLKGSDPGNYTMLSNIFA 525
            ++  +G +P + TM S + A
Sbjct: 596 RMVD-EGINPNHITMTSVLCA 615



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 137/527 (25%), Positives = 224/527 (42%), Gaps = 109/527 (20%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           LIS  + CR+   A +VF++I DP    +++L+ A   N L   A + F  M+ +GV  +
Sbjct: 43  LISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCN 102

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            F  P +LK         L   +HA+    G+  D+FV N+L+  Y   G   +  A+++
Sbjct: 103 EFALPVVLKCVPDAR---LGAQVHAMAMATGFGSDVFVANALVAMYGGFGF--MDDARRV 157

Query: 175 FMSM-GERDIVSWNSMIAGLVKGGELSEARRLFDEMP----------------------- 210
           F     ER+ VSWN +++  VK  +  +A ++F EM                        
Sbjct: 158 FNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRN 217

Query: 211 ----------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                           ++D  + N ++D Y K G +++A  +FEK+P  ++VSW+ +   
Sbjct: 218 IEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNAL--- 274

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
                                       ISG    G    A  L  QM+ +GL P+  TL
Sbjct: 275 ----------------------------ISGCVLNGHDHRAIELLLQMKYSGLVPNVFTL 306

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            SIL AC+ +G   LG ++H  + K     +  +   LVDMYAK   LD+A  VF+ M  
Sbjct: 307 SSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFH 366

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL--CACTHAGFIDKGV 432
           +DL+  NA++ G +  G+ ++AL LF  ++ EG G ++ T   VL   A   A    + V
Sbjct: 367 RDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQV 426

Query: 433 Q-------YFYSMERDYGILPQVEHYGC---------------------MIDLLGRSGRL 464
                   + +      G++       C                     MI  L +    
Sbjct: 427 HALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHG 486

Query: 465 KEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           + A++L   M    +EP+  +  +LL AC   +A E  ++V   LI+
Sbjct: 487 EGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 162/374 (43%), Gaps = 43/374 (11%)

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI---------------- 245
           ARR+FDE+P+   VSW++++  Y+  G    A + F  +    +                
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 246 ------VSWSTMVWGYSKD--------------GDMEMAKLLFDRMPA-KTLVPWTIIIS 284
                 V    M  G+  D              G M+ A+ +F+   + +  V W  ++S
Sbjct: 116 ARLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMS 175

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
            Y +     +A +++ +M  +G++P +     ++ AC  S  +  G +VHA + +  +  
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK 235

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           +    NALVDMY K G +D A  +F  M   D+VSWNA++ G  ++G   +A+ L  +MK
Sbjct: 236 DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK 295

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
             G  P+ +T   +L AC+ AG  D G Q    M +           G ++D+  ++  L
Sbjct: 296 YSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFL 354

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNI 523
            +A ++   M    + I+   L+  C  H      +E L     L+    G N T L+ +
Sbjct: 355 DDARKVFDWM-FHRDLILCNALISGC-SHGGRH--DEALSLFYELRKEGLGVNRTTLAAV 410

Query: 524 FAATGDWNKVANVR 537
             +T      +  R
Sbjct: 411 LKSTASLEAASTTR 424



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 151/342 (44%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    +  + T+Q+ A  +K+    D ++   LI S   C  +  A +VF 
Sbjct: 404 RTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFE 463

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +    D+    ++I A  Q      A ++F++M  KG+  D F    LL AC   + +  
Sbjct: 464 ECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 523

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D F  N+L+ +Y+KCG   +  A+  F S+ ER +VSW++MI GL
Sbjct: 524 GKQVHAHLIKRQFMSDAFAGNALVYTYAKCG--SIEDAELAFSSLPERGVVSWSAMIGGL 581

Query: 194 VKGGE-----------------------------------LSEARRLFDEMPE-----RD 213
            + G                                    + EA+R F+ M E     R 
Sbjct: 582 AQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRT 641

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              ++ ++D   +AG+++ A EL   +P + N   W  ++       D E+ KL    LF
Sbjct: 642 EEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLF 701

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  E A++   M+++ +K +
Sbjct: 702 ILEPEKSGTH-VLLANTYASAGMWNEVAKVRKLMKDSNIKKE 742



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 60/343 (17%)

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
           A L+K G L+  R              N ++  Y+K      A  +F++IP    VSWS+
Sbjct: 28  ASLLKSGSLASFR--------------NHLISFYSKCRRPCCARRVFDEIPDPCHVSWSS 73

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           +V  YS +                               G+ + A + +  M   G+  +
Sbjct: 74  LVTAYSNN-------------------------------GLPRSAIQAFHGMRAEGVCCN 102

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           +  L  +L    ++    LG +VHA      F  +  V NALV MY   G +D+A  VFN
Sbjct: 103 EFALPVVLKCVPDA---RLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN 159

Query: 371 -GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
              ++++ VSWN ++     + Q   A+ +F  M   G  P ++ F  V+ ACT +  I+
Sbjct: 160 EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIE 219

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G Q  ++M    G    V     ++D+  + GR+  A  + + MP + + + W  L+  
Sbjct: 220 AGRQ-VHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMP-DSDVVSWNALISG 277

Query: 490 C----RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           C      H A+EL  +     ++  G  P  +T+ S + A +G
Sbjct: 278 CVLNGHDHRAIELLLQ-----MKYSGLVPNVFTLSSILKACSG 315


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  334 bits (857), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 182/559 (32%), Positives = 305/559 (54%), Gaps = 20/559 (3%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D ++   L+++   C  +  A KVF+ +    V  +N++I A   +  + +AF +F  MQ
Sbjct: 44  DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ 103

Query: 108 EKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
            +G   D  T+  +L AC N +N  H  + +   I +  +  D+FV  +LI  Y++C   
Sbjct: 104 HEGERCDRVTFLSILDACVNPENLQH-GKHVRESISETSFELDLFVGTALITMYARCR-- 160

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
               A ++F  M ++++++W+++I      G   EA R F  M +     + V++ ++L+
Sbjct: 161 SPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLN 220

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTM------VWGYSKDGDMEMAKLLFDRMPAKTL 276
           G+     +     +   I    +   +TM      V+G  + G++++A+++   M  + +
Sbjct: 221 GFTTPSGLEELSRIHLLITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQI 280

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
             W ++I+GY   G ++EA   Y +++   +  D  T IS+L AC  S  L  G  +H++
Sbjct: 281 TAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSN 340

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             +     +  V NAL +MY+KCGS++NA  +F+ M  +  VSWN ML   A HG+ E+ 
Sbjct: 341 AVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEV 400

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L L  +M+ EG   +  TFV VL +C+HAG I +G QYF+S+  D GI  + EHYGC++D
Sbjct: 401 LKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVD 460

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+G+L+EA + +  MP EP  + W +LLGACR H  ++  +     L+ L   DPGN
Sbjct: 461 LLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLEL---DPGN 517

Query: 517 YT---MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
            +   +LSNI++  GDW   A +R  M   R +K  G SS++V N+VHEF V D  HP++
Sbjct: 518 SSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRA 577

Query: 574 EQIYQMINTLGKDLKPVGH 592
            +IY  +  L   ++  G+
Sbjct: 578 AEIYDKVEELCFAMREAGY 596



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/411 (28%), Positives = 209/411 (50%), Gaps = 20/411 (4%)

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
           +GV  +  T+  +L +    +     + IH+ + +  +  D+FV  +L+++Y+KCG   +
Sbjct: 4   EGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCG--SL 61

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP---ER-DAVSWNTILDGY 224
           + A+K+F  M  R + +WNSMI+         EA  +F  M    ER D V++ +ILD  
Sbjct: 62  TDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDAC 121

Query: 225 AKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                +     + E I       ++   + ++  Y++    E A  +F RM  K L+ W+
Sbjct: 122 VNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWS 181

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA-CAESGLLGLGMKVHASINK 339
            II+ +A+ G   EA R +  M++ G+ P+  T IS+L      SGL  L  ++H  I +
Sbjct: 182 AIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELS-RIHLLITE 240

Query: 340 YRFKCNTNVCNALVDMYAKC--GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
           +     T + NALV++Y +C  G LD A  +   M ++ + +WN ++ G  +HG+  +AL
Sbjct: 241 HGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREAL 300

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
             + R++ E    DK TF+ VL ACT +  + +G +  +S   + G+   V     + ++
Sbjct: 301 ETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTNM 359

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
             + G ++ A R+  SMP+  +A+ W  +L A  +H     +EEVL  LIR
Sbjct: 360 YSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGE---SEEVLK-LIR 405



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 181/378 (47%), Gaps = 20/378 (5%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +NL   K +   I +   + D ++   LI+  A CR    A +VF  ++  ++  ++ +I
Sbjct: 125 ENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAII 184

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A   +    +A R F  MQ++G+  +  T+  LL      +    +  IH LI + G  
Sbjct: 185 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 244

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----R 203
               + N+L++ Y +C    + +A+ +   M E+ I +WN +I G    G   EA    +
Sbjct: 245 DTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQ 304

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN---------IVSWSTMVWG 254
           RL  E    D V++ ++L+    +  +        K+ H N         ++  + +   
Sbjct: 305 RLQLEAIPVDKVTFISVLNACTSSTSLAEG-----KMIHSNAVECGLDSDVIVKNALTNM 359

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           YSK G ME A+ +FD MP ++ V W  ++  YA+ G ++E  +L  +ME+ G+K +  T 
Sbjct: 360 YSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITF 419

Query: 315 ISILAACAESGLLGLGMKVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGM- 372
           +S+L++C+ +GL+  G +   S+   R  +  T     LVD+  + G L  A    + M 
Sbjct: 420 VSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMP 479

Query: 373 TKKDLVSWNAMLYGLAMH 390
           ++ ++V+W ++L    +H
Sbjct: 480 SEPEIVTWASLLGACRVH 497


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 190/513 (37%), Positives = 293/513 (57%), Gaps = 21/513 (4%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A    M  A ++FN++ + +V  +N ++   + N    +A   F  M ++    D
Sbjct: 158 MLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKR----D 213

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD---IFVPNSLIDSYSKCGVVGVSLA 171
           + +   L+      +   LV+    L+   G  G    +   N+LI  Y + G+     A
Sbjct: 214 SASLRALISGLIQND--KLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMA--YEA 269

Query: 172 KKLFMSM--------GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
           +KLF  +          R+++SWNSMI   V+ G++  AR LFD+M ERD  SWNT++ G
Sbjct: 270 RKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISG 329

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           Y +  +M  A  LF ++P  + +SW+ M+ G+S+ G +++A  LF R+P K+LV W  +I
Sbjct: 330 YVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMI 389

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SGY +    K A  ++ QM+  G KPD  TL SIL+ACA    L LG ++H  + K  F 
Sbjct: 390 SGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTK-AFI 448

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
            +  + N+LV MY++CG++  A  VF+ M  ++D++SWNAM+ G A HG   +AL LF  
Sbjct: 449 ADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDL 508

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           MK     P   TF+ VL AC HAG I++G + F SM   +GI PQVEHY  ++D++GR G
Sbjct: 509 MKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHG 568

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
           +L+EA+ L+ SMP EP+  +WG LLGAC+ HN VE+A    + L++L+      Y +L N
Sbjct: 569 QLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHN 628

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           ++A  G W+  A +R  M+K   QK +G S V+
Sbjct: 629 MYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 197/422 (46%), Gaps = 76/422 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVK-GGELSE-ARRLFDEMPERDAVSWNTILDGYAKAG 228
           A++LF  M  RDIVSWN M++G +  GG+  E AR +FD+MPE D VSWNT+L GYAK+G
Sbjct: 107 ARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSG 166

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT------------- 275
            M+ A ELF ++P RN+VSW+ MV GY  +G +E A   F  MP +              
Sbjct: 167 MMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGLIQ 226

Query: 276 -----------------------LVPWTIIISGYAEKGMAKEAARLYDQME---EAGLKP 309
                                  +  +  +I+GY +KGMA EA +L+D++    + G   
Sbjct: 227 NDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSR 286

Query: 310 DD--------------GTLIS---ILAACAESGLLG-----------LGMKVHASINKYR 341
            +              G ++S   +     E                L MK  +++    
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM 346

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            + +T   N ++  +++ GSL  A  +F  + +K LVSWN+M+ G   +   + A+ +F 
Sbjct: 347 PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFL 406

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFID--KGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           +M+ EG  PD++T   +L AC  AG +D   G Q    + + +  +  +     ++ +  
Sbjct: 407 QMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKAF--IADLPINNSLVTMYS 462

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R G + EA  +   M ++ + I W  ++G    H     A ++ D L++     P   T 
Sbjct: 463 RCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFD-LMKQCNVQPSYITF 521

Query: 520 LS 521
           +S
Sbjct: 522 IS 523



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 186/394 (47%), Gaps = 36/394 (9%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           ++ A++LF S    + ++WN MI   VK  E+ +AR+LF+EMP RD VSWN +L GY   
Sbjct: 73  INEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISC 132

Query: 228 GE--MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           G   +  A  +F+++P  + VSW+TM+ GY+K G M+ A+ LF+ MP + +V W  ++SG
Sbjct: 133 GGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGMMDKAEELFNEMPERNVVSWNAMVSG 192

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y   G  ++A   +  M     K D  +L +++     SGL+     V A     ++  N
Sbjct: 193 YLMNGHVEKAIEFFKLMP----KRDSASLRALI-----SGLIQNDKLVEAERILLQYGGN 243

Query: 346 ------TNVCNALVDMYAKCGSLDNAMSVFN--------GMTKKDLVSWNAMLYGLAMHG 391
                  +  N L+  Y + G    A  +F+        G ++++++SWN+M+      G
Sbjct: 244 VGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAG 303

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
               A  LF +M +     D +++  ++        + +    F  M       P    +
Sbjct: 304 DIVSARELFDKMVER----DTFSWNTMISGYVQILDMKEASNLFSRMPE-----PDTLSW 354

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             MI      G LK A  L + +P E + + W +++    K+   + A  +    ++L+G
Sbjct: 355 NMMISGFSEIGSLKLAHDLFKRIP-EKSLVSWNSMISGYEKNEDYKGAMNIF-LQMQLEG 412

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
             P  +T+ S + A  G  + V   ++    T+A
Sbjct: 413 KKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKA 446


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 289/531 (54%), Gaps = 8/531 (1%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           A KVF+ + + D  L+NT+I    +N +  ++ +VF D+  E     D  T   +L A  
Sbjct: 173 ARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVA 232

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                 L   IH+L  K G +   +V    I  YSKCG   + +A  LF      DIV++
Sbjct: 233 ELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCG--KIKMASTLFREFRRPDIVAY 290

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDA-VSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           N+MI G    GE   +  LF E+    A +  +T++     +G + L + +       N 
Sbjct: 291 NAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNF 350

Query: 246 VSWSTMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           +S +++       YSK  ++E A+ LFD  P K+L  W  +ISGY + G+ ++A  L+ +
Sbjct: 351 LSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFRE 410

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M+ +   P+  T+  IL+ACA+ G L LG  VH  +    F+ +  V  AL+ MYAKCGS
Sbjct: 411 MQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGS 470

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +  A  +F+ M KK+ V+WN M+ G  +HG G++AL +FS M + G  P   TF+ VL A
Sbjct: 471 IAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYA 530

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+HAG + +G + F SM   YG  P V+HY C++D+LGR+G L+ AL+ +++MP++P   
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPS 590

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W TLLGACR H    LA  V + L  L   + G + +LSNI +A  ++ + A VR   K
Sbjct: 591 VWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAK 650

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           K +  K  G + +E+    H F+  DQ HP+ + I++ +  L   ++  G+
Sbjct: 651 KRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGY 701



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 228/512 (44%), Gaps = 18/512 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +  +++   Q  AQI+    + D  +  KL   L+    +  A  +F  +Q PDV L+N 
Sbjct: 29  RSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           L+R    N     +  VF  +++      N  TY F + A +G        +IH      
Sbjct: 89  LMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVD 148

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G   ++ + ++++  Y K     V  A+K+F  M E+D + WN+MI+G  K     E+ +
Sbjct: 149 GCDSELLLGSNIVKMYFK--FWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQ 206

Query: 205 LFDEMPERDAVSWNT-----ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----Y 255
           +F ++        +T     IL   A+  E+ L  ++          S   ++ G    Y
Sbjct: 207 VFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLY 266

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           SK G ++MA  LF       +V +  +I GY   G  + +  L+ ++  +G K    TL+
Sbjct: 267 SKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLV 326

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S++     SG L L   +H    K  F  +T+V  AL  +Y+K   +++A  +F+   +K
Sbjct: 327 SLVPV---SGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEK 383

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
            L SWNAM+ G   +G  E A+ LF  M++  F P+  T   +L AC   G +  G ++ 
Sbjct: 384 SLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLG-KWV 442

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
           + + R       +     +I +  + G + EA RL   MP + N + W T++     H  
Sbjct: 443 HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLHGH 501

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            + A  +   ++   G  P   T L  ++A +
Sbjct: 502 GQEALTIFSEMLN-SGIAPTPVTFLCVLYACS 532


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 193/564 (34%), Positives = 311/564 (55%), Gaps = 75/564 (13%)

Query: 30  LNQTKQLFAQIIK--LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N  KQL A  ++  +D  +D      L+  L L   +  A K+F+  Q+    LYN LI
Sbjct: 1   MNGIKQLHAHCLRTGVDETKD------LLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLI 54

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           +A   +    ++  ++  +   G+   + T+ F+  A    +    ++++H+  ++ G+ 
Sbjct: 55  QAYYVHHQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFE 114

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D F   +LI +Y+                                 K G L  ARR+FD
Sbjct: 115 SDSFCCTTLITAYA---------------------------------KLGALCCARRVFD 141

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           EM +RD   WN ++ GY + G+M  A ELF+ +P +N+ SW+T++ G+S++G+       
Sbjct: 142 EMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNY------ 195

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGL 326
                                     EA +++  ME +  +KP+  T++S+L ACA  G 
Sbjct: 196 -------------------------SEALKMFLCMEKDKSVKPNHITVVSVLPACANLGE 230

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLY 385
           L +G ++     +  F  N  VCNA ++MY+KCG +D A  +F  +  +++L SWN+M+ 
Sbjct: 231 LEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIG 290

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
            LA HG+ ++AL LF++M  EG  PD  TFVG+L AC H G + KG + F SME  + I 
Sbjct: 291 SLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKIS 350

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P++EHYGCMIDLLGR G+L+EA  L+++MP++P+A++WGTLLGAC  H  VE+AE   + 
Sbjct: 351 PKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEA 410

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS-VEVDNEVHEFS 564
           L +L+ ++PGN  ++SNI+AA   W+ V  +R  MKK    K +G S  VEV  +VH+F+
Sbjct: 411 LFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFT 470

Query: 565 VCDQLHPKSEQIYQMINTLGKDLK 588
           V D+ HP+S +IYQ++  + + +K
Sbjct: 471 VEDKSHPRSYEIYQVLEEIFRRMK 494


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 315/578 (54%), Gaps = 12/578 (2%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C++ +  K   Q+ A I+K     D Y+A  L++      +M  A  +F +++  D+
Sbjct: 167 LQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDI 226

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N+++   +QN L ++A   F D+Q   +  D  +   ++ A     +    + IHA 
Sbjct: 227 VTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAY 286

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K G+  +I V N+LID Y+KC  +  S   + F  M  +D++SW +  AG  +     
Sbjct: 287 AIKNGFDSNILVGNTLIDMYAKCCCM--SYGGRAFDLMAHKDLISWTTAAAGYAQNKCYL 344

Query: 201 EA----RRLFDEMPERDAVSWNTIL---DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
           +A    R+L  E  + DA    +IL    G    G++        +    + V  +T++ 
Sbjct: 345 QALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIID 404

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y + G ++ A  +F+ +  K +V WT +IS Y   G+A +A  ++  M+E GL+PD  T
Sbjct: 405 VYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVT 464

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L+SIL+A      L  G ++H  I +  F    ++ N LVDMYA+CGS+++A  +F    
Sbjct: 465 LVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTK 524

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            ++L+ W AM+    MHG GE A+ LF RMKDE   PD  TF+ +L AC+H+G +++G  
Sbjct: 525 NRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKS 584

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           +   M+ +Y + P  EHY C++DLLGR   L+EA ++V+SM  EP   +W  LLGACR H
Sbjct: 585 FLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIH 644

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
           +  E+ E   + L+ L   +PGNY ++SN+FAA G W  V  VR++MK +   K  G S 
Sbjct: 645 SNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSW 704

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +EV N++H F   D+LHP+ ++IYQ +  + + LK  G
Sbjct: 705 IEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREG 742



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 241/499 (48%), Gaps = 21/499 (4%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQA 99
           IK       ++   L++  A C  +  A K+F+ +    DV  +N++I A   N +  +A
Sbjct: 85  IKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEA 144

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
             +F +M + GV T+ +T+   L+AC   ++  L   IHA I K G   D++V N+L+  
Sbjct: 145 LCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAM 204

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAV 215
           Y + G   +  A  +F ++  +DIV+WNSM+ G ++ G  SEA   F ++     + D V
Sbjct: 205 YVRFG--KMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQV 262

Query: 216 SWNTILD-----GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           S  +I+      GY   G+   A+ +       NI+  +T++  Y+K   M      FD 
Sbjct: 263 SIISIIVASGRLGYLLNGKEIHAYAIKNGFD-SNILVGNTLIDMYAKCCCMSYGGRAFDL 321

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           M  K L+ WT   +GYA+     +A  L  Q++  G+  D   + SIL AC     LG  
Sbjct: 322 MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKI 381

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            ++H    +     +  + N ++D+Y +CG +D A+ +F  +  KD+VSW +M+     +
Sbjct: 382 KEIHGYTIRGGLS-DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHN 440

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G   KAL +FS MK+ G  PD  T V +L A      + KG +    + R  G + +   
Sbjct: 441 GLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRK-GFILEGSI 499

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
              ++D+  R G +++A ++        N I+W  ++ A   H   E A E+    +R+K
Sbjct: 500 SNTLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAMISAYGMHGYGEAAVEL---FMRMK 555

Query: 511 GSD--PGNYTMLSNIFAAT 527
                P + T L+ ++A +
Sbjct: 556 DEKIIPDHITFLALLYACS 574



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 225/468 (48%), Gaps = 20/468 (4%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ + +  +  +N ++   V N     A  ++ +M+  GV  D++T+P LLKAC     
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSM 189
                 IH L  K G    +FV NSL+  Y+KC    ++ A+KLF  M  R D+VSWNS+
Sbjct: 74  LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCN--DINGARKLFDRMYVRNDVVSWNSI 131

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE----MNLAFELFEKIPHR-- 243
           I+     G  +EA  LF EM +   V+         +A E    + L  ++   I     
Sbjct: 132 ISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGR 191

Query: 244 --NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             ++   + +V  Y + G M  A ++F  +  K +V W  +++G+ + G+  EA   +  
Sbjct: 192 VLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYD 251

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           ++ A LKPD  ++ISI+ A    G L  G ++HA   K  F  N  V N L+DMYAKC  
Sbjct: 252 LQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCC 311

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +      F+ M  KDL+SW     G A +    +AL L  +++ EG   D      +L A
Sbjct: 312 MSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLA 371

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C     + K ++  +      G+   V     +ID+ G  G +  A+R+ +S+  + + +
Sbjct: 372 CRGLNCLGK-IKEIHGYTIRGGLSDPVLQ-NTIIDVYGECGIIDYAVRIFESIECK-DVV 428

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
            W +++ +C  HN   LA + L+    +K  G +P +Y  L +I +A 
Sbjct: 429 SWTSMI-SCYVHNG--LANKALEVFSSMKETGLEP-DYVTLVSILSAV 472



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 193/411 (46%), Gaps = 44/411 (10%)

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAV 215
           Y KCG   V  A+ +F  M ER I +WN+M+ G V  GE   A  ++ EM       D+ 
Sbjct: 2   YGKCG--SVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSY 59

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMVWGYSKDGDMEMAKLLFDRM 271
           ++  +L       ++    E+          S+    +++V  Y+K  D+  A+ LFDRM
Sbjct: 60  TFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 272 PAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
             +  +V W  IIS Y+  GM  EA  L+ +M +AG+  +  T  + L AC +S  + LG
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
           M++HA+I K     +  V NALV MY + G +  A  +F  +  KD+V+WN+ML G   +
Sbjct: 180 MQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQN 239

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMER--DYGIL-- 445
           G   +AL  F  +++    PD+ + + ++ A    G++  G + + Y+++   D  IL  
Sbjct: 240 GLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVG 299

Query: 446 -PQVEHYG--CMIDLLGRSGRLK-------------------------EALRLVQSMPVE 477
              ++ Y   C +   GR+  L                          E LR +Q   ++
Sbjct: 300 NTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMD 359

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
            +A + G++L ACR  N +   +E+    IR   SDP     + +++   G
Sbjct: 360 VDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGECG 410



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 1/135 (0%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCGS+ +A  +F+ M+++ + +WNAM+ G   +G+   AL ++  M+  G   D YT
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F  +L AC     +  G +  + +   YG    V     ++ L  +   +  A +L   M
Sbjct: 61  FPVLLKACGIVEDLFCGAE-IHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 475 PVEPNAIIWGTLLGA 489
            V  + + W +++ A
Sbjct: 120 YVRNDVVSWNSIISA 134


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 191/513 (37%), Positives = 293/513 (57%), Gaps = 21/513 (4%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A    M  A ++FN++ + +V  +N ++   + N    +A   F  M ++   + 
Sbjct: 158 MLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASL 217

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD---IFVPNSLIDSYSKCGVVGVSLA 171
                 L++  N K    LV+    L+   G  G    +   N+LI  Y + G+     A
Sbjct: 218 RALVSGLIQ--NDK----LVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMA--YEA 269

Query: 172 KKLFMSM--------GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
           +KLF  +          R+++SWNSMI   V+ G++  AR LFD+M ERD  SWNT++ G
Sbjct: 270 RKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISG 329

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           Y +  +M  A  LF ++P  + +SW+ M+ G+S+ G +++A  LF R+P K+LV W  +I
Sbjct: 330 YVQILDMKEASNLFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMI 389

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           SGY +    K A  ++ QM+  G KPD  TL SIL+ACA    L LG ++H  + K  F 
Sbjct: 390 SGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIHQLVTK-AFI 448

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
            +  + N+LV MY++CG++  A  VF+ M  ++D++SWNAM+ G A HG   +AL LF  
Sbjct: 449 ADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDL 508

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           MK     P   TF+ VL AC HAG I++G + F SM   +GI PQVEHY  ++D++GR G
Sbjct: 509 MKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHG 568

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
           +L+EA+ L+ SMP EP+  +WG LLGAC+ HN VE+A    + L++L+      Y +L N
Sbjct: 569 QLEEAMSLINSMPCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQPESSAPYVLLHN 628

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           ++A  G W+  A +R  M+K   QK +G S V+
Sbjct: 629 MYADVGRWDDAAEMRTMMEKNNVQKDAGYSRVD 661



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 198/422 (46%), Gaps = 76/422 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVK-GGELSE-ARRLFDEMPERDAVSWNTILDGYAKAG 228
           A++LF  M  RDIVSWN M++G +  GG+  E AR +FD+MPE D VSWNT+L GYAK+G
Sbjct: 107 ARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSG 166

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA------KTLVP---- 278
            M+ A ELF ++P RN+VSW+ MV GY  +G +E A   F  MP       + LV     
Sbjct: 167 TMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGLIQ 226

Query: 279 --------------------------WTIIISGYAEKGMAKEAARLYDQME---EAGLKP 309
                                     +  +I+GY +KGMA EA +L+D++    + G   
Sbjct: 227 NDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSR 286

Query: 310 DD--------------GTLIS---ILAACAESGLLG-----------LGMKVHASINKYR 341
            +              G ++S   +     E                L MK  +++    
Sbjct: 287 RNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFSRM 346

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            + +T   N ++  +++ GSL  A  +F  + +K LVSWN+M+ G   +   + A+ +F 
Sbjct: 347 PEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGAMNIFL 406

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFID--KGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           +M+ EG  PD++T   +L AC  AG +D   G Q    + + +  +  +     ++ +  
Sbjct: 407 QMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQIHQLVTKAF--IADLPINNSLVTMYS 462

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R G + EA  +   M ++ + I W  ++G    H     A ++ D L++     P   T 
Sbjct: 463 RCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFD-LMKQCNVQPSYITF 521

Query: 520 LS 521
           +S
Sbjct: 522 IS 523



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 186/394 (47%), Gaps = 36/394 (9%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           ++ A++LF S    + ++WN MI   VK  E+ +AR+LF+EMP RD VSWN +L GY   
Sbjct: 73  INEARELFDSTEHWNTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISC 132

Query: 228 GE--MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           G   +  A  +F+++P  + VSW+TM+ GY+K G M+ A+ LF+ MP + +V W  ++SG
Sbjct: 133 GGKFVERARNMFDQMPETDCVSWNTMLSGYAKSGTMDKAEELFNEMPERNVVSWNAMVSG 192

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y   G  ++A   +  M     K D  +L +++     SGL+     V A     ++  N
Sbjct: 193 YLMNGHVEKAIEFFKLMP----KRDSASLRALV-----SGLIQNDKLVEAERILLQYGGN 243

Query: 346 ------TNVCNALVDMYAKCGSLDNAMSVFN--------GMTKKDLVSWNAMLYGLAMHG 391
                  +  N L+  Y + G    A  +F+        G ++++++SWN+M+      G
Sbjct: 244 VGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAG 303

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
               A  LF +M +     D +++  ++        + +    F  M       P    +
Sbjct: 304 DIVSARELFDKMVER----DTFSWNTMISGYVQILDMKEASNLFSRMPE-----PDTLSW 354

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             MI      G LK A  L + +P E + + W +++    K+   + A  +    ++L+G
Sbjct: 355 NMMISGFSEIGSLKLAHDLFKRIP-EKSLVSWNSMISGYEKNEDYKGAMNIF-LQMQLEG 412

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
             P  +T+ S + A  G  + V   ++    T+A
Sbjct: 413 KKPDRHTLSSILSACAGLVDLVLGTQIHQLVTKA 446


>gi|357480561|ref|XP_003610566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511621|gb|AES92763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 598

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 185/547 (33%), Positives = 309/547 (56%), Gaps = 12/547 (2%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPY-----IAPKLISSLALCRQMGLAIKVFNDIQ 76
           Q L+  KN++  KQ+ A  +K   Q  P+     +  +++   A    +  A K+F+ + 
Sbjct: 15  QFLNNAKNISHLKQIHALFLKHLPQNAPHHFFDRLLFRVLHFSAEKSNLYYAHKLFDTMP 74

Query: 77  D-PDVHLYNTLIRACVQNSLN-AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           +  +  ++ +LIRA + +  +       F  M +KG+    FT+  +L AC         
Sbjct: 75  NCSNCFIWTSLIRAFLSHHTHFRHCISTFAIMHQKGILPSGFTFSSVLNACGRVPAVFEG 134

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +HA + + G+ G+  V  +L+D Y+KCG V    A+ +F  M +RD+V+W +MI G  
Sbjct: 135 KQVHARLVQSGFLGNKIVQTALLDMYAKCGYV--CDARDVFDGMVDRDVVAWTAMICGYA 192

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           K G + +AR LFD M ER++ +W T++ GYA  G+M  A EL++ +  +  V+W  M+ G
Sbjct: 193 KAGRMVDARLLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKEEVTWVAMIAG 252

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTI--IISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
           Y K G++  A+ +FD +P   L P T   +++ YA+ G A+EA  +Y++M  A +K  D 
Sbjct: 253 YGKLGNVSEARRIFDEIPVP-LNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKVTDV 311

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            ++  ++ACA+   + +   +   I +   +    V NAL+ M +KCG++D A   FN M
Sbjct: 312 AMVGAISACAQLRDIRMSNLLTYDIEEGFCEKTHIVSNALIHMQSKCGNIDLAWREFNIM 371

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             +DL +++AM+   A HG+ + A+ LF +M+ EG  P++ TFVGVL AC+ +G I++G 
Sbjct: 372 RNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLTPNQVTFVGVLNACSTSGLIEEGC 431

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           ++F  M   YGI P  EHY CM+DLLGR+G+L++A  L++      +A  WG+LL ACR 
Sbjct: 432 RFFQIMTGVYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAACRV 491

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           +  VEL E     L  +  +D GNY +L+N +A+   W +   V+  M K   +KPSG S
Sbjct: 492 YGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWERAEEVKKLMSKKGMKKPSGYS 551

Query: 553 SVEVDNE 559
            ++ + +
Sbjct: 552 WIQRETK 558


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 197/574 (34%), Positives = 302/574 (52%), Gaps = 21/574 (3%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           A +IK     + ++   L++  A C  M  A KVF+++   +V ++ TL+   VQNS   
Sbjct: 4   AHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPE 63

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
            A  VF DM E G F  NFT    L AC+      L +  HA I K     D  + N+L 
Sbjct: 64  VAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALC 123

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERD 213
             YSK G +  S+  K F   GE+D++SW ++I+     G      RLF EM     E +
Sbjct: 124 SLYSKFGSLDSSV--KAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPN 181

Query: 214 AVSWNTILDGYAKAGEMNLAFE---LFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFD 269
             +  ++L   +     +L  +   L  K+ H  N+   +++V+ Y K G ++ AK LF+
Sbjct: 182 DFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFN 241

Query: 270 RMPAKTLVPWTIIISGYAE-----------KGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           RM  K L+ W  +I+G+A+           +    EA  +Y ++  +G KPD  TL SIL
Sbjct: 242 RMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSIL 301

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
             C+    L  G ++HA   K  F  +  V  ALVDMY KCGS++ A   F  M+ + L+
Sbjct: 302 TVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLI 361

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW +M+   A HGQ + AL LF  M+  GF P++ TFVGVL AC+HAG +D+ ++YF  M
Sbjct: 362 SWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIM 421

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           +++Y I P ++HYGC++D+  R GRL EA  +++ M VEPN  IW  L+  CR H   EL
Sbjct: 422 QKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEEL 481

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
                + L++LK      Y +L N++ +   W  V+ VR  MK+ +  K    S + +  
Sbjct: 482 GFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWSRISIKG 541

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           EVH F   ++LH  + +++ ++N L    K +G+
Sbjct: 542 EVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGY 575



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/412 (27%), Positives = 201/412 (48%), Gaps = 26/412 (6%)

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           M+HA + K G   + FV + L++ Y+KCGV  +  A+K+F ++  R++V W +++ G V+
Sbjct: 1   MVHAHVIKTGTHEEFFVMSFLVNVYAKCGV--MVNARKVFDNLPRRNVVVWTTLMTGYVQ 58

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKA---------GEMNLAFELFEKIPHRNIV 246
             +   A  +F +M E  +   N  L     A         G+   AF +  +I H + +
Sbjct: 59  NSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSI 118

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
             + +   YSK G ++ +   F     K ++ WT IIS   + G A    RL+ +M    
Sbjct: 119 G-NALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFEN 177

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           ++P+D TL S+L+ C+      LGM+VH+   K   + N  + N+LV +Y KCG +D A 
Sbjct: 178 VEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAK 237

Query: 367 SVFNGMTKKDLVSWNAMLYGLAM-----------HGQGEKALGLFSRMKDEGFGPDKYTF 415
           ++FN M  K+L++WNAM+ G A               G +ALG++ ++   G  PD +T 
Sbjct: 238 NLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTL 297

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
             +L  C+    +++G Q  ++     G L  V     ++D+  + G ++ A +    M 
Sbjct: 298 SSILTVCSRLAALEQGEQ-IHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMS 356

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
                I W +++ +  +H   + A ++ + + RL G  P   T +  + A +
Sbjct: 357 TR-TLISWTSMITSFARHGQSQHALQLFEDM-RLAGFRPNQITFVGVLAACS 406



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/406 (27%), Positives = 194/406 (47%), Gaps = 36/406 (8%)

Query: 24  LHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ C +L      KQ  A IIK  +  D  I   L S  +    +  ++K F +  + DV
Sbjct: 88  LNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKDV 147

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             + T+I AC  N       R+F++M  + V  ++FT   +L  C+      L   +H+L
Sbjct: 148 ISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSL 207

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL- 199
             K G+  ++ + NSL+  Y KCG   +  AK LF  M  +++++WN+MIAG  +  +L 
Sbjct: 208 STKLGHESNLRITNSLVYLYLKCGC--IDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLA 265

Query: 200 ----------SEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                     +EA  ++ ++       D  + ++IL   ++      A E  E+I  + I
Sbjct: 266 KDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLA----ALEQGEQIHAQTI 321

Query: 246 --------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                   V  + +V  Y K G +E A+  F  M  +TL+ WT +I+ +A  G ++ A +
Sbjct: 322 KSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQ 381

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMY 356
           L++ M  AG +P+  T + +LAAC+ +G++   ++    + K Y+ K   +    LVDM+
Sbjct: 382 LFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMF 441

Query: 357 AKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            + G LD A  V   M  + +   W  ++ G   HG  E  LG ++
Sbjct: 442 VRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRNHGNEE--LGFYA 485


>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 555

 Score =  334 bits (856), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 187/577 (32%), Positives = 290/577 (50%), Gaps = 73/577 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C +     ++ AQI+     +  YI   L+S       +G A KVF DI  P   ++
Sbjct: 34  LKSCVSFRNLAKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFEDITAPSTTVW 93

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I+   ++  + ++  +F  M   GV  + FTY FLL AC     F   + IH  +  
Sbjct: 94  NQIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSACVRSRLFREGEQIHGRVLV 153

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE--LSE 201
            GY+ +++V  +LI+ Y+  G                               GG+  L  
Sbjct: 154 NGYWSNLYVRTNLINLYANGG------------------------------DGGDFDLKR 183

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           AR LFDEM                               P  N+V W++++ GY + GD 
Sbjct: 184 ARYLFDEM-------------------------------PDSNVVGWNSLLAGYVRRGDF 212

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + A+ +FD MP + +  WTI+++G+A+ G  K A  L+DQM  AG++ D   L++ L+AC
Sbjct: 213 DGARKVFDEMPERNVRTWTIMVAGFAQNGQCKLALSLFDQMRRAGVELDQVALVAALSAC 272

Query: 322 AESGLLGLGMKVHASINKY----RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           AE G L LG  +H  + +           ++ NAL+ MYA CG +D A  VF  + +++ 
Sbjct: 273 AELGDLTLGKWIHGYVERTWRSRHLPVLVSLNNALIHMYASCGVMDLAYKVFEEIPQRNT 332

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEG---FGPDKYTFVGVLCACTHAGFIDKGVQY 434
           VSW++++ G A  G G +A+ +F  M   G     PD+ TF+G L AC+HAG I  G++ 
Sbjct: 333 VSWSSIITGFAKQGCGVEAIRIFQLMLCSGQNEVRPDEITFIGALTACSHAGLISDGIRL 392

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F SM + +G++PQ+EHYGCM+DLL R+G L EAL L++SMP++PN  +WG LL  CR H 
Sbjct: 393 FQSMHKTFGVIPQIEHYGCMVDLLSRAGLLTEALSLIESMPMKPNNAVWGALLSGCRLHK 452

Query: 495 AVELAEEVLDCL---IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
             E+   V   L   I       G + +L+N++AA G W   A VR  M     +KPSG 
Sbjct: 453 NDEIVSHVAKHLSFEIHPNNQAAGYFMLLANVYAADGRWQDTATVRRNMHDIGVKKPSGR 512

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           S +E++  +  F V ++ H     IY+M+  + +  +
Sbjct: 513 SWIEINGVLCSFMVGEETHKDVNLIYEMLGNITRQTQ 549


>gi|297744558|emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 181/508 (35%), Positives = 294/508 (57%), Gaps = 26/508 (5%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           M  A+++F+ +Q+ +V  +N ++   +QN    +A   F+ M E+   + +     L++ 
Sbjct: 1   MDEALQLFDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQ- 59

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGD----IFVPNSLIDSYSKCGVVGVSLAKKLFMSMG- 179
            NG+    L +    L+       D    +   N L+  Y + G   V  A++LF  +  
Sbjct: 60  -NGE----LDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNG--RVDKARQLFDQIPF 112

Query: 180 -----------ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
                      ER++VSWNSMI   VK  ++  AR LFD+M ERD +SWNT++ GY +  
Sbjct: 113 YDGGQKDGGRFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWNTMISGYVRMS 172

Query: 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
           +M  A+ LF+++P+ + ++W++M+ G+++ G++E+A+ LF  +P K LV W  +I+GY  
Sbjct: 173 DMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYEN 232

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G  K A  LY QM   G KPD  TL S+L+ C+    L LGM++H  I K     +  +
Sbjct: 233 NGDYKGATELYRQMLLQGEKPDRHTLSSVLSVCSGFAALHLGMQIHQQITKTVIP-DIPI 291

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
            N+L+ MY++CG++  A ++F+ +  +K+++SWNAM+ G A HG    AL LF  MK   
Sbjct: 292 NNSLITMYSRCGAIVEARTIFDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLK 351

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
             P   TF+ VL AC HAGF+ +G  +F SM  ++GI P++EH+  ++D++GR G+L+EA
Sbjct: 352 VRPTYITFISVLNACAHAGFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRHGQLEEA 411

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + L+ SMP EP+  +WG LLGACR HN VELA    + L++L+      Y +L N++A  
Sbjct: 412 MDLINSMPFEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYVLLHNMYADV 471

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVE 555
           G W+    +R+ M++   +K  G S V+
Sbjct: 472 GQWDNATEMRMMMERNNIRKQPGYSWVD 499



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 134/336 (39%), Gaps = 43/336 (12%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS  A    + LA  +F  I   ++  +N++I     N     A  ++  M  +G   D
Sbjct: 195 MISGFAQKGNLELARALFATIPQKNLVSWNSMIAGYENNGDYKGATELYRQMLLQGEKPD 254

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T   +L  C+G    HL   IH  I K     DI + NSLI  YS+CG   +  A+ +
Sbjct: 255 RHTLSSVLSVCSGFAALHLGMQIHQQITKT-VIPDIPINNSLITMYSRCG--AIVEARTI 311

Query: 175 FMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA----VSWNTILDGYAKAGE 229
           F  +  +++++SWN+MI G    G  ++A  LF+ M         +++ ++L+  A A  
Sbjct: 312 FDEVKLQKEVISWNAMIGGYAFHGFAADALELFELMKRLKVRPTYITFISVLNACAHA-- 369

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
                                   G+ K+G M    +  +      +  +  ++      
Sbjct: 370 ------------------------GFVKEGRMHFKSMACEFGIEPRIEHFASLVDIVGRH 405

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G  +EA  L + M     +PD     ++L AC     + L      ++ K   + +    
Sbjct: 406 GQLEEAMDLINSMP---FEPDKAVWGALLGACRVHNNVELARVAAEALMKLEPESSAPYV 462

Query: 350 NALVDMYAKCGSLDNA-----MSVFNGMTKKDLVSW 380
             L +MYA  G  DNA     M   N + K+   SW
Sbjct: 463 -LLHNMYADVGQWDNATEMRMMMERNNIRKQPGYSW 497


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 326/575 (56%), Gaps = 22/575 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L  T+Q  A+I+ L   ++P++A KLIS+ A+     L+  VF+ +    V+L+N+LI
Sbjct: 41  KSLKLTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLI 100

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              V+N    +AF  F  M  +GV  D++T   + K C+     +  ++IH    K G+ 
Sbjct: 101 NGFVKNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFV 160

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS---EARR 204
            D+ V NSL+  YSKCG  G  L  KLF  M ER++ SWN +++G    G+ +   E   
Sbjct: 161 LDVIVANSLMSMYSKCGGFGECL--KLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSG 218

Query: 205 LFDEMP----ERDAVSWNTILD-GYAKAGEMNLAFELFEKIPHRNIVSWS--------TM 251
              +M     + DA + +++L       G+ +   EL   I    +   S         +
Sbjct: 219 FVKDMQIEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCL 278

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPD 310
           +  YS+   +++ + +FDRM  + +  WT +I+G+ + G  +E   L+ +M+   G++P+
Sbjct: 279 IDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPN 338

Query: 311 DGTLISILAAC-AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
             +L+S+L AC A +GL G+  ++H    + +F  + ++CNAL+DMY+KCGSLD+A  VF
Sbjct: 339 KVSLVSVLPACSAVAGLTGV-KQIHGYAIRKQFNNDVSLCNALIDMYSKCGSLDHAKQVF 397

Query: 370 N-GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
             G  ++D +SW++M+ G  +HG+GE+A+ ++++M   G  PD  T VGVL AC+ AG +
Sbjct: 398 EFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDMITIVGVLSACSRAGLV 457

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           D+G+  + S    Y I P VE   C++D+LGRSG+L +AL  +++MP+EP+  +WG ++ 
Sbjct: 458 DEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIKTMPMEPSPSVWGAVVS 517

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           A   H   E+ +     L++L+  +P NY  LSN+ A++  W+ V+ VR  MK     K 
Sbjct: 518 ASIIHGNSEMQDLAYRFLVQLEPENPSNYVSLSNLHASSRRWDVVSEVRTMMKDRCLTKT 577

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            G S + ++N  H F   D+LHP S+ IY+++  L
Sbjct: 578 PGCSWISINNTTHFFYAADKLHPCSKSIYELLGGL 612


>gi|357131531|ref|XP_003567390.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 531

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/446 (37%), Positives = 263/446 (58%), Gaps = 3/446 (0%)

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF-GDIFVPNSLIDSYSKCGVVGVS 169
           V  D+F+ PF L A      F     +HAL ++       + V N+L+D Y+KC  +  +
Sbjct: 77  VSPDHFSLPFALNAAASLGLFRFGASLHALAFRLALVPARLPVANALVDLYAKCDALPAA 136

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
            A     S+   D VS+NS++    +   +  A  LF  MP R  VSWN ++  Y  AG+
Sbjct: 137 HAAL--ASIPAPDAVSFNSLLCAHARLASVPAAESLFTSMPSRTQVSWNAMVVVYVNAGD 194

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
              A  +F+++P R+  SWS ++ GY K G M+ A+ LFD+MP K LV WT +I+GYA+ 
Sbjct: 195 FASARLVFDEMPTRDSSSWSVLIVGYCKRGSMQSARELFDKMPGKNLVTWTAMINGYAQC 254

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G  KE+  L+ ++E  G++PD  T++ ++++ ++ G   L   V   +++ R + N  V 
Sbjct: 255 GRPKESISLFRELEAVGIEPDAATMVGVISSASQIGSTALAGWVGNYVDRKRIERNEKVL 314

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            ALVDM+AKCG+++ A++ F  + + D   + A++ GLA HG    AL +F RM+ +   
Sbjct: 315 TALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFERMRAQAVR 374

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           PD  TFVGVL AC+HAG +D G+ Y+ +M +DYG+  + +HY C++D+LGR+GR+ EA  
Sbjct: 375 PDPITFVGVLTACSHAGLVDMGLDYWEAMVQDYGMDRRADHYACVVDMLGRAGRIVEAFD 434

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           +VQ+MP+ P+    G LL AC+ H+ VE+AE V + L  L+  + GNY +LSNI+A    
Sbjct: 435 MVQTMPMGPHPGALGALLSACKTHDNVEIAEIVANKLFELEPRNTGNYILLSNIYAGKEQ 494

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVE 555
           W +   +R  M+     K  G++ VE
Sbjct: 495 WEEAERIRSLMRTKLPFKQPGSTWVE 520



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           ++R+  +   L+   A C  +  A+  F +I+ PD + Y  LI     +  +  A +VF 
Sbjct: 307 IERNEKVLTALVDMHAKCGNVEQALNCFREIEQPDAYPYTALISGLATHGHSTLALQVFE 366

Query: 105 DMQEKGVFTDNFTYPFLLKACN 126
            M+ + V  D  T+  +L AC+
Sbjct: 367 RMRAQAVRPDPITFVGVLTACS 388


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/503 (36%), Positives = 272/503 (54%), Gaps = 42/503 (8%)

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           LL+ C+  N   L+Q IH  + K G   +    ++L+ SY++  +V ++  + +F S+  
Sbjct: 16  LLERCS--NMKELMQ-IHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISS 72

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM-----PER----------------------- 212
            + V WN+M+       +   A  L+ +M     P                         
Sbjct: 73  PNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQI 132

Query: 213 -----------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
                      +  + N++L  YA +G +  A  LF ++P R+IVSW+ M+ GY K G++
Sbjct: 133 HAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNL 192

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           +MA  +F  MP K ++ WT +I G+   GM KEA  L  QM  AG+KPD  TL   L+AC
Sbjct: 193 DMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSAC 252

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A  G L  G  +H  I K   K +  +   L DMY KCG ++ A+ VF+ + KK + +W 
Sbjct: 253 AGLGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWT 312

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           A++ GLA+HG+G +AL  F++M+  G  P+  TF  +L AC+HAG  ++G   F SM   
Sbjct: 313 AIIGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSV 372

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           Y I P +EHYGCM+DL+GR+G LKEA   ++SMPV+PNA IWG LL AC+ H   EL +E
Sbjct: 373 YNIKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKE 432

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           +   LI L     G Y  L++I+AA G+WN+V  VR Q+K        G SS+ ++  VH
Sbjct: 433 IGKILIELDPDHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCSSITLNGVVH 492

Query: 562 EFSVCDQLHPKSEQIYQMINTLG 584
           EF   D  HP  ++IY M N L 
Sbjct: 493 EFFAGDGSHPHIQEIYGMPNLLA 515



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 193/414 (46%), Gaps = 45/414 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIK--VFNDIQDPDVH 81
           L +C N+ +  Q+  Q++K    R+      L+ S A    + LA    VF+ I  P+  
Sbjct: 17  LERCSNMKELMQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTV 76

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           ++NT++RA   ++    A  ++  M    V  +++T+PFLLKAC+  + F   Q IHA I
Sbjct: 77  IWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAFEETQQIHAHI 136

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  +++  NSL+  Y+  G   +  A  LF  +  RDIVSWN MI G +K G L  
Sbjct: 137 IKRGFGLEVYATNSLLRVYAISG--NIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDM 194

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVSWS------ 249
           A ++F  MPE++ +SW T++ G+ + G    A  L +++      P    +S S      
Sbjct: 195 AYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAG 254

Query: 250 ---------------------------TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
                                       +   Y K G+ME A L+F ++  K +  WT I
Sbjct: 255 LGALEQGKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAI 314

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YR 341
           I G A  G  +EA   + QM++AG+ P+  T  +IL AC+ +GL   G  +  S++  Y 
Sbjct: 315 IGGLAIHGKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYN 374

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
            K +      +VD+  + G L  A      M  K +   W A+L    +H   E
Sbjct: 375 IKPSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFE 428



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 66/257 (25%), Positives = 108/257 (42%), Gaps = 43/257 (16%)

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           L P+     ++L  C+    L   M++H  + K     N    + L+  YA+   ++ A 
Sbjct: 6   LPPNTEQTQALLERCSNMKEL---MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAY 62

Query: 367 S--VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT- 423
           +  VF+ ++  + V WN ML   +     E AL L+ +M       + YTF  +L AC+ 
Sbjct: 63  TRVVFDSISSPNTVIWNTMLRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSA 122

Query: 424 ----------HAGFIDKG----VQYFYSMERDYGI-------------LPQ--VEHYGCM 454
                     HA  I +G    V    S+ R Y I             LP   +  +  M
Sbjct: 123 LSAFEETQQIHAHIIKRGFGLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIM 182

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL-GACRKHNAVELAEEVLDCLIRL--KG 511
           ID   + G L  A ++ Q+MP E N I W T++ G  R    + + +E L  L ++   G
Sbjct: 183 IDGYIKFGNLDMAYKIFQAMP-EKNVISWTTMIVGFVR----IGMHKEALSLLQQMLVAG 237

Query: 512 SDPGNYTMLSNIFAATG 528
             P + T+  ++ A  G
Sbjct: 238 IKPDSITLSCSLSACAG 254


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/627 (32%), Positives = 321/627 (51%), Gaps = 55/627 (8%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS-LALCRQMGL--- 67
           + + L +  LQN    K+ +Q KQL AQI++  L      +P L+S+ L++   + L   
Sbjct: 3   TTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLP-----SPSLLSTILSIYSNLNLLHD 57

Query: 68  AIKVFNDIQDPDVHL-YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           ++ +FN +  P   L + ++IR    + L   +   F+ M   G + D+  +P +LK+C 
Sbjct: 58  SLLIFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCT 117

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC-GVVGVSLAKKLFMSMGERDIVS 185
                   + +H  I + G   D++  N+L++ YSK   +  V+  KK+F      D+ S
Sbjct: 118 LMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYS 177

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG----------EMNLA-- 233
                    +   L   R++F+ MP+RD VSWNT++ G A+ G          EM  A  
Sbjct: 178 KKEK-----ESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADL 232

Query: 234 ----FELFEKIP-----------------------HRNIVSWSTMVWGYSKDGDMEMAKL 266
               F L   +P                         ++   S+++  Y+K   ++ +  
Sbjct: 233 RPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 292

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F  +P    + W  II+G  + GM  E  + + QM  A +KP+  +  SI+ ACA    
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTT 352

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L LG ++H  I + RF  N  + +ALVDMYAKCG++  A  +F+ M   D+VSW AM+ G
Sbjct: 353 LHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMG 412

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
            A+HG    A+ LF RM+ EG  P+   F+ VL AC+HAG +D+  +YF SM +DY I+P
Sbjct: 413 YALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIP 472

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            +EHY  + DLLGR GRL+EA   +  M +EP   +W TLL ACR H  +ELAE+V   L
Sbjct: 473 GLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKL 532

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
             +   + G Y +LSNI++A G W     +R+ M+    +K    S +E+ N+VH F   
Sbjct: 533 FTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAG 592

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGHA 593
           D+ HP  ++I + +  L + ++  G+ 
Sbjct: 593 DKSHPYYDRINEALKVLLEQMEREGYV 619


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/643 (31%), Positives = 320/643 (49%), Gaps = 80/643 (12%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           +T Q  A+I+K   Q D YI+ KLI+S +       A  +   I DP V+ +++LI A  
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALT 92

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +  L +Q+  VF  M   G+  D    P L K C   + F   + IH +    G   D F
Sbjct: 93  KAKLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAF 152

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERD----------------------------- 182
           V  SL   Y +CG +G   A+K+F  M E+D                             
Sbjct: 153 VQGSLFHMYMRCGRMGD--ARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEK 210

Query: 183 ------IVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVS-------------- 216
                 IVSWN +++G  + G   EA  +F +M      P++  VS              
Sbjct: 211 SGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNM 270

Query: 217 -------------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                               + +LD Y K+G +    +LF++         +  + G S+
Sbjct: 271 GRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSR 330

Query: 258 DG----DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           +G     +EM  L  ++     +V WT II+G A+ G   EA  L+ +M+ AG+KP+  T
Sbjct: 331 NGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVT 390

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           + S+L AC     LG G   H    +     + +V +AL+DMYAKCG +  +  VFN M 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMP 450

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K+LV WN+++ G +MHG+ ++ + +F  +      PD  +F  +L AC   G  D+G +
Sbjct: 451 TKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF  M  +YGI P++EHY CM++LLGR+G+L+EA  L++ +P EP++ +WG LL +CR  
Sbjct: 511 YFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQ 570

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
           N V+LAE     L  L+  +PG Y ++SNI+AA G W +V ++R +M+    +K  G S 
Sbjct: 571 NNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           ++V N+V+    CD+ HP+ +QI + ++ + ++++  GH   L
Sbjct: 631 IQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNL 673


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 200/643 (31%), Positives = 321/643 (49%), Gaps = 80/643 (12%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           +T Q  A+I+K   Q D YI+ KLI+S +       A  V   I DP ++ +++LI A  
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +  L  Q+  VF  M   G+  D+   P L K C   + F + + IH +    G   D F
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERD----------------------------- 182
           V  S+   Y +CG +G   A+K+F  M ++D                             
Sbjct: 153 VQGSMFHMYMRCGRMGD--ARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 183 ------IVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVS-------------- 216
                 IVSWN +++G  + G   EA  +F ++      P++  VS              
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 217 -------------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                               + ++D Y K+G +     LF +         +  + G S+
Sbjct: 271 GRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR 330

Query: 258 DGDMEMAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           +G ++ A  +F+    +T+    V WT II+G A+ G   EA  L+ +M+ AG+KP+  T
Sbjct: 331 NGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVT 390

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           + S+L AC     LG G   H    +     N +V +AL+DMYAKCG ++ +  VFN M 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K+LV WN+++ G +MHG+ ++ + +F  +      PD  +F  +L AC   G  D+G +
Sbjct: 451 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF  M  +YGI P++EHY CM++LLGR+G+L+EA  L++ MP EP++ +WG LL +CR  
Sbjct: 511 YFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQ 570

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
           N V+LAE   + L  L+  +PG Y +LSNI+AA G W +V ++R +M+    +K  G S 
Sbjct: 571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           ++V N V+     D+ HP+ +QI + ++ + K+++  GH   L
Sbjct: 631 IQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNL 673


>gi|147820355|emb|CAN67654.1| hypothetical protein VITISV_038410 [Vitis vinifera]
          Length = 492

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 166/447 (37%), Positives = 257/447 (57%), Gaps = 2/447 (0%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+ +    I  YS  G   V  A+ +F  M   D VSWN MI G V+   + +AR LFD+
Sbjct: 47  DVLMLTKRISDYSLKG--EVDYARTIFEEMSHPDTVSWNVMIRGYVENHRIGDARELFDK 104

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MP R +VSWNT++  YAK G+ ++A +LF  +P +++VSW+ ++   S+   +E A  LF
Sbjct: 105 MPVRSSVSWNTMIMAYAKEGKTHIAMKLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLF 164

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
             MP  + V W  IISG+ + G+A E    + +M   G++P   +  S L A A+  +L 
Sbjct: 165 KLMPEPSSVSWASIISGFQQNGLAAETLCRFKEMLSVGVQPTSHSFTSALTASADLAMLS 224

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           L  ++++ + K  F+ NT + N+ + M+ K GS  NA  V   + + D+V+WNAM+ G  
Sbjct: 225 LSQQLYSQLLKRGFESNTXIGNSAISMFIKSGSFRNARRVLEDLPQPDIVTWNAMVVGYG 284

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            +G G +A+  F +M+   F PD+ +F+G+L  C+H G+++KG QYF SME +YGI P  
Sbjct: 285 QNGYGIEAIMSFHQMQKAKFLPDRVSFLGLLHGCSHCGYVEKGKQYFRSMESNYGISPGP 344

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHY CM+DLL R+G LKEA +L++ MP EP  I W TLL  CR    +EL     + ++ 
Sbjct: 345 EHYACMVDLLSRAGFLKEAHKLIKEMPFEPTCIFWRTLLNGCRIWGDLELGFYAANRILE 404

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L   +     M+ +I+A+ G W +V  +R QM+K  A+K  G S +E+   +H F+  D 
Sbjct: 405 LDPYNSSACLMVIDIYASAGRWKEVLEMRRQMRKREARKELGCSWIEIKGRIHLFTTRDD 464

Query: 569 LHPKSEQIYQMINTLGKDLKPVGHAAK 595
            HP+++ IY  +  L  D     H  +
Sbjct: 465 THPEADHIYLTLLLLSCDNAHNAHIVR 491



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 87/397 (21%), Positives = 162/397 (40%), Gaps = 84/397 (21%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           + D  +  K IS  +L  ++  A  +F ++  PD   +N +IR  V+N     A  +F  
Sbjct: 45  KEDVLMLTKRISDYSLKGEVDYARTIFEEMSHPDTVSWNVMIRGYVENHRIGDARELFDK 104

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  +                +  +W                       N++I +Y+K G 
Sbjct: 105 MPVR----------------SSVSW-----------------------NTMIMAYAKEG- 124

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
               +A KLF+ M ++D+VSW ++I  L +G  + +A RLF  MPE  +VSW +I+ G+ 
Sbjct: 125 -KTHIAMKLFIVMPDKDVVSWTAIITALSRGSHIEDAWRLFKLMPEPSSVSWASIISGFQ 183

Query: 226 KAG-----------------------------------EMNLAFELFEKIPHR----NIV 246
           + G                                    ++L+ +L+ ++  R    N  
Sbjct: 184 QNGLAAETLCRFKEMLSVGVQPTSHSFTSALTASADLAMLSLSQQLYSQLLKRGFESNTX 243

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
             ++ +  + K G    A+ + + +P   +V W  ++ GY + G   EA   + QM++A 
Sbjct: 244 IGNSAISMFIKSGSFRNARRVLEDLPQPDIVTWNAMVVGYGQNGYGIEAIMSFHQMQKAK 303

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNA 365
             PD  + + +L  C+  G +  G +   S+ + Y           +VD+ ++ G L  A
Sbjct: 304 FLPDRVSFLGLLHGCSHCGYVEKGKQYFRSMESNYGISPGPEHYACMVDLLSRAGFLKEA 363

Query: 366 MSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFS 401
             +   M  +   + W  +L G  + G  E  LG ++
Sbjct: 364 HKLIKEMPFEPTCIFWRTLLNGCRIWGDLE--LGFYA 398



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 43/217 (19%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+ ++QL++Q++K   + +  I    IS          A +V  D+  PD+  +N ++  
Sbjct: 223 LSLSQQLYSQLLKRGFESNTXIGNSAISMFIKSGSFRNARRVLEDLPQPDIVTWNAMVVG 282

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN    +A   F  MQ+     D  ++  LL  C+                 CGY   
Sbjct: 283 YGQNGYGIEAIMSFHQMQKAKFLPDRVSFLGLLHGCS----------------HCGY--- 323

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS-----WNSMIAGLVKGGELSEARR 204
                             V   K+ F SM     +S     +  M+  L + G L EA +
Sbjct: 324 ------------------VEKGKQYFRSMESNYGISPGPEHYACMVDLLSRAGFLKEAHK 365

Query: 205 LFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           L  EMP E   + W T+L+G    G++ L F    +I
Sbjct: 366 LIKEMPFEPTCIFWRTLLNGCRIWGDLELGFYAANRI 402


>gi|357154895|ref|XP_003576937.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 661

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 203/633 (32%), Positives = 331/633 (52%), Gaps = 51/633 (8%)

Query: 9   TWFSKRRLL--EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--Q 64
            W + R L+     L  L  C +  +  QL A +    L    + A +L++  AL    +
Sbjct: 27  AWNTNRNLVVTHPLLALLESCASFPRFLQLHALLTVSGLAAHRFPASRLLAFCALSTPPR 86

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  A  +      P+ ++  T++RA ++  L ++A  +F  +  + +  D  T  F +KA
Sbjct: 87  VDHAAAILARASAPNAYMLATMMRAFLRARLPSRASALFRRVIRESLPADARTLVFAIKA 146

Query: 125 CNGKNWFHLV---QMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
              ++  H     + +H +  K G+    + V N+L+  Y+      ++ A+ LF  M +
Sbjct: 147 AASEHEHHSPSGGEGVHCVALKWGHVAQSVLVGNALVHFYANHR--SLAHARNLFDEMPD 204

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM-------PE---------------------- 211
           RD+VSW +++ G  + G   EA R+F  M       P                       
Sbjct: 205 RDVVSWTTLVDGYARRGLADEAWRVFCRMVVAGGLQPNEVTLVAVVSAMGQMGLLAFGRM 264

Query: 212 -----------RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                      R     N ++D + K G    A E+F+ +  +++ SW+TMV  Y+K GD
Sbjct: 265 VYRYVADGGVGRSVNLENALIDMFGKFGCAASAREVFDSMAVKDVYSWTTMVNAYAKCGD 324

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E A  LFD MP +  V W+ +I+ Y++    +EA RL+  M E G++P +  L+S+L+A
Sbjct: 325 LESAARLFDDMPRRNAVSWSCMIAAYSQANQPEEAVRLFKAMIEEGVEPINAGLVSVLSA 384

Query: 321 CAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           CA+ G L LG  ++ + +   +     N+ NA +D+YAKCG  D A  +F  M ++++VS
Sbjct: 385 CAQLGCLDLGRWIYDNYVISGKAVLTVNLGNAFIDVYAKCGDFDAASKLFAEMAERNVVS 444

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+M+   A+HGQ E+ L LF ++K     PD+ TF+G+L AC+H+G + +G +YF  M+
Sbjct: 445 WNSMIMAHAVHGQSEEVLRLFEQLKGTCIVPDEITFLGLLSACSHSGLVSEGRRYFKEMK 504

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             YGI P+ EHY CMIDLLG+ G L+EA  + + MP+E +   WG LL ACR +  VE+ 
Sbjct: 505 LIYGIEPKSEHYACMIDLLGKIGLLEEAFEVAKGMPMETDEAGWGALLNACRMYGNVEIG 564

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E   D L++L   D G Y ++S I+A+   W++V  +R+ M++   +K  G SS+EVD +
Sbjct: 565 EFAADKLVQLNPLDSGIYVLMSQIYASKNKWDQVKILRVLMRERGVKKNPGCSSIEVDGK 624

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            HEF V D  H  SE IY  +  +   LK  G+
Sbjct: 625 FHEFLVADVSHVHSEDIYAALKNIYFHLKWEGY 657


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 196/616 (31%), Positives = 319/616 (51%), Gaps = 48/616 (7%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL-Y 83
           H   +L    QL A  + L L R P + P+L+S         L     +   D  + L Y
Sbjct: 84  HHRSHLRLGVQLHALSLSLGLSRHPILLPRLLS--VYTSHPSLLPSAASVAADSTLPLPY 141

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N LI +C+++ L  QA   + +M + GV  D FTYP +L+AC       L + +H     
Sbjct: 142 NVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAG 201

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA- 202
            G  G++F  N+L+  Y+KCG   ++ A+K+F  M +RD+VSWNSMI+     G+ +EA 
Sbjct: 202 AGMDGNLFFQNALMSMYAKCG--DLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAM 259

Query: 203 ---RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMVWG---- 254
              RR+ DE  E ++V+WNTI  GY +  +   A  L  ++      V + T+V G    
Sbjct: 260 ELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNAC 319

Query: 255 ----------------------------------YSKDGDMEMAKLLFDRMPAKTLVPWT 280
                                             Y++  DME A++LF  +    +V W 
Sbjct: 320 SRVGWLRLGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWN 379

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            ++S +A    A+EA+ ++ +M   G+KP+  T+++ LA CA    L  G ++H  I K+
Sbjct: 380 TMLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKH 439

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
            FK    + N+L+DMY+K G L  A +VF+ M   D++S+ +M+ G  M G+G  AL LF
Sbjct: 440 GFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLF 499

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
            +M D G  PD    V VL AC+H+G + +G + F  M   YGI PQ+EHY CMIDL  R
Sbjct: 500 EQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYAR 559

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +G L++A  ++   P  P + +W  L+GAC     +E+ E     L+ ++  + G+Y ++
Sbjct: 560 AGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVLI 619

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           +N++AA G W+++A VR  M+     K  G +  ++ N    F V D+ +P + +IY ++
Sbjct: 620 ANMYAAAGCWDELATVRKLMRDLGVTKAPGLAWTDLGNGFTPFLVGDRSNPLAPEIYVVL 679

Query: 581 NTLGKDLKPVGHAAKL 596
           + L + ++ + + + L
Sbjct: 680 DELSEQMRNINNCSDL 695


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 192/566 (33%), Positives = 312/566 (55%), Gaps = 10/566 (1%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL    +K  L+ +  +A  L+S  A C+ +    K+F  +   D+  +N +I  CVQN 
Sbjct: 268 QLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNG 327

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              QA  +F DMQ+ G+  D+ T   LL A    N F+  + +H  I +     D+F+ +
Sbjct: 328 FVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVS 387

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           +L+D Y KC    V +A+ ++ S    D+V  ++MI+G V  G   EA ++F  + E+  
Sbjct: 388 ALVDIYFKCR--AVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGI 445

Query: 213 --DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
             +AV+  ++L   A    M L  EL     +          S ++  Y+K G ++++  
Sbjct: 446 RPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHY 505

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F ++ AK  V W  +IS +A+ G  +EA  L+ +M   G+K  + T+ S+L+ACA    
Sbjct: 506 IFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPA 565

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           +  G ++H  + K   + +    +AL+DMY KCG+L+ A  VF  M +K+ VSWN+++  
Sbjct: 566 IYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIAS 625

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
              +G  ++++ L   M++EGF  D  TF+ ++ AC HAG + +G++ F  M  +Y I P
Sbjct: 626 YGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAP 685

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           ++EH+ CM+DL  R+G+L +A+ L+  MP +P+A IWG LL ACR H  VELAE     L
Sbjct: 686 RMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQEL 745

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
            +L   + G Y ++SNI A  G W+ V+ VR  MK T+ QK  G S V+V+N  H F   
Sbjct: 746 FKLDPHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAA 805

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGH 592
           D+ HP SE IY  + ++  +L+  G+
Sbjct: 806 DKSHPDSEDIYMSLKSILLELREEGY 831



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/456 (30%), Positives = 229/456 (50%), Gaps = 14/456 (3%)

Query: 43  LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           L L  D ++   LI   A    +  A +VF+ + + D  L+N ++   V+    + A  +
Sbjct: 175 LGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVEL 234

Query: 103 FLDMQEKGVFTDNFTYP-FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           F DM+  G   +  T   FL  +    + F  VQ+ H L  K G   ++ V N+L+  Y+
Sbjct: 235 FGDMRASGCEPNFATLACFLSVSATESDLFFGVQL-HTLAVKYGLESEVAVANTLVSMYA 293

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSW 217
           KC  +      KLF  M   D+V+WN MI+G V+ G + +A  LF +M +     D+V+ 
Sbjct: 294 KCKCLDDGW--KLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 218 NTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
            ++L         N   EL   I     H ++   S +V  Y K   + MA+ ++D   A
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKA 411

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
             +V  + +ISGY   GM++EA +++  + E G++P+   + S+L ACA    + LG ++
Sbjct: 412 IDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQEL 471

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H+   K  ++    V +AL+DMYAKCG LD +  +F+ ++ KD V+WN+M+   A +G+ 
Sbjct: 472 HSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEP 531

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           E+AL LF  M  EG      T   VL AC     I  G +  + +     I   +     
Sbjct: 532 EEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKE-IHGVVIKGPIRADLFAESA 590

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +ID+ G+ G L+ A R+ +SMP E N + W +++ +
Sbjct: 591 LIDMYGKCGNLEWAHRVFESMP-EKNEVSWNSIIAS 625



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 192/386 (49%), Gaps = 12/386 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L      NQ K+L   I++  +  D ++   L+     CR + +A  V++  +  DV
Sbjct: 355 LPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDV 414

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            + +T+I   V N ++ +A ++F  + E+G+  +      +L AC       L Q +H+ 
Sbjct: 415 VIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSY 474

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  Y G  +V ++L+D Y+KCG   + L+  +F  +  +D V+WNSMI+   + GE  
Sbjct: 475 ALKNAYEGRCYVESALMDMYAKCG--RLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPE 532

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI---PHR-NIVSWSTMV 252
           EA  LF EM     +   V+ +++L   A    +    E+   +   P R ++ + S ++
Sbjct: 533 EALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALI 592

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G++E A  +F+ MP K  V W  II+ Y   G+ KE+  L   M+E G K D  
Sbjct: 593 DMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHV 652

Query: 313 TLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T +++++ACA +G +  G+++   +  +Y+          +VD+Y++ G LD AM +   
Sbjct: 653 TFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVD 712

Query: 372 MT-KKDLVSWNAMLYGLAMHGQGEKA 396
           M  K D   W A+L+   +H   E A
Sbjct: 713 MPFKPDAGIWGALLHACRVHRNVELA 738



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 227/491 (46%), Gaps = 21/491 (4%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQ-RDPYIAPKLISSLALCRQMGLAIKVF 72
           RRLL   L+      +L+   Q+  + +   L   D  +  +L+    L R+   A+ VF
Sbjct: 40  RRLLA-VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVF 98

Query: 73  NDIQDPDVHL---YNTLIRACVQNSLNAQAFRVFLDM--QEKGVFTDNFTYPFLLKACNG 127
           + +          +N LIR          A   +L M         D+ T+P+++K+C  
Sbjct: 99  SSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA 158

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L +++H      G  GD+FV ++LI  Y+  G++    A+++F  M ERD V WN
Sbjct: 159 LGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWD--ARQVFDGMAERDCVLWN 216

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
            M+ G VK G +S A  LF +M     E +  +    L   A   ++    +L       
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 244 NIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            + S     +T+V  Y+K   ++    LF  MP   LV W  +ISG  + G   +A  L+
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
             M+++G++PD  TL+S+L A  +      G ++H  I +     +  + +ALVD+Y KC
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKC 396

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
            ++  A SV++     D+V  + M+ G  ++G  ++A+ +F  + ++G  P+      VL
Sbjct: 397 RAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVL 456

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
            AC     +  G + + Y+++  Y     VE    ++D+  + GRL  +  +   +  + 
Sbjct: 457 PACASMAAMKLGQELHSYALKNAYEGRCYVE--SALMDMYAKCGRLDLSHYIFSKISAK- 513

Query: 479 NAIIWGTLLGA 489
           + + W +++ +
Sbjct: 514 DEVTWNSMISS 524



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 122/269 (45%), Gaps = 8/269 (2%)

Query: 264 AKLLFDRMP---AKTLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISIL 318
           A  +F  +P   A   +PW  +I G    G  + A   Y +M    +   PD  T   ++
Sbjct: 94  AVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVV 153

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            +CA  G + LG  VH +        +  V +AL+ MYA  G L +A  VF+GM ++D V
Sbjct: 154 KSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCV 213

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            WN M+ G    G    A+ LF  M+  G  P+  T    L        +  GVQ  +++
Sbjct: 214 LWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQ-LHTL 272

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
              YG+  +V     ++ +  +   L +  +L   MP + + + W  ++  C ++  V+ 
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFVDQ 331

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           A  +L C ++  G  P + T++S + A T
Sbjct: 332 A-LLLFCDMQKSGIRPDSVTLVSLLPALT 359



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 109/256 (42%), Gaps = 12/256 (4%)

Query: 311 DGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  L+++L  C     L LG++VH  ++       +T +   LV MY       +A++VF
Sbjct: 39  DRRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVF 98

Query: 370 NGMTKKD---LVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTH 424
           + + +      + WN ++ GL M G    AL  + +M        PD +TF  V+ +C  
Sbjct: 99  SSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAA 158

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G I  G +  +   R  G+   +     +I +    G L +A ++   M  E + ++W 
Sbjct: 159 LGAIALG-RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGM-AERDCVLWN 216

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            ++    K  +V  A E+   + R  G +P   T+   +  +  + +    V+L    T 
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDM-RASGCEPNFATLACFLSVSATESDLFFGVQLH---TL 272

Query: 545 AQKPSGASSVEVDNEV 560
           A K    S V V N +
Sbjct: 273 AVKYGLESEVAVANTL 288


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 204/621 (32%), Positives = 313/621 (50%), Gaps = 106/621 (17%)

Query: 69  IKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF-LDMQEKGVFTDNFTYPFLLKAC-- 125
           +  F+ IQ+ DV+ +N +I    +   +++  R F L M   G+  D  T+P +LKAC  
Sbjct: 39  MHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRT 98

Query: 126 --NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             +G         IH L  K G+  D++V  SLI  YS+   VG   A+ LF  M  RD+
Sbjct: 99  VIDGNK-------IHCLALKFGFMWDVYVAASLIHLYSRYKAVGN--ARILFDEMPVRDM 149

Query: 184 VSWNSMIAGLVKGGELSEA----------------------------------------- 202
            SWN+MI+G  + G   EA                                         
Sbjct: 150 GSWNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKH 209

Query: 203 ----------RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK------------- 239
                     +++FD M  RD +SWN+I+  Y    +   A  LF++             
Sbjct: 210 GLESELLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTL 269

Query: 240 IPHRNIVS-------------------W--------STMVWGYSKDGDMEMAKLLFDRMP 272
           I   +I+S                   W        + +V  Y+K G ++ A+ +F+ +P
Sbjct: 270 ISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP 329

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLGLGM 331
              ++ W  IISGYA+ G A EA  +Y+ MEE G +  + GT +S+L AC+++G L  GM
Sbjct: 330 NTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGM 389

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           K+H  + K     +  V  +L DMY KCG L++A+S+F  + + + V WN ++     HG
Sbjct: 390 KLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHG 449

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            GEKA+ LF  M DEG  PD  TFV +L AC+H+G +D+G   F  M+ DYGI P ++HY
Sbjct: 450 HGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHY 509

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           GCM+D+ GR+G+L+ AL+ ++SM ++P+A IWG LL ACR H  V+L +   + L  ++ 
Sbjct: 510 GCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP 569

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
              G + +LSN++A+ G W  V  +R        +K  G SS+EVDN+V  F   +Q HP
Sbjct: 570 EHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHP 629

Query: 572 KSEQIYQMINTLGKDLKPVGH 592
             E++Y+ +  L   LK +G+
Sbjct: 630 MYEEMYRELTALQAKLKMIGY 650


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 324/579 (55%), Gaps = 14/579 (2%)

Query: 24  LHKCKNLNQTKQ---LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C++ +  KQ   + A ++K     + ++A  LI+  A   +MG A  +F ++ D D 
Sbjct: 289 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 348

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA-CNGKNWFHLVQMIHA 139
             +N+++   VQN L  +A + + +M++ G   D      ++ A     N  H +Q IHA
Sbjct: 349 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQ-IHA 407

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
              K G   D+ V NSL+D Y+K     +     +F  M ++D+VSW ++IAG  + G  
Sbjct: 408 YAMKNGLDSDLQVGNSLVDMYAK--FCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 465

Query: 200 SEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR---NIVSWSTMV 252
           S A  LF E+     + D +  ++IL   +    ++   E+   I  +   ++V  + +V
Sbjct: 466 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIV 525

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y + G+++ A  +F+ +  K +V WT +IS Y   G+A EA  L+  M+E G++PD  
Sbjct: 526 DVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSI 585

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           +L+SIL+A A    L  G ++H  + +  F    ++ + LVDMYA+CG+L+ + +VFN +
Sbjct: 586 SLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFI 645

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             KDLV W +M+    MHG G  A+ LF RM+DE   PD   FV VL AC+H+G +++G 
Sbjct: 646 RNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 705

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           ++  SM+ +Y + P  EHY C++DLLGR+  L+EA + V+ M VEP A +W  LLGAC+ 
Sbjct: 706 RFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQI 765

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H+  EL E     L+ +   +PGNY ++SN+++A   W  V  VR++MK +  +K  G S
Sbjct: 766 HSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCS 825

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            +EV N+VH F   D+ HP+S +IY  ++ + + L   G
Sbjct: 826 WIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEG 864



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 153/530 (28%), Positives = 265/530 (50%), Gaps = 24/530 (4%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLD-LQRDPYIAPKLISSLALCRQ 64
           ++P+ FS        L+     K L++ +Q+ A +I  + L    +++ +L+     C  
Sbjct: 70  QSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGC 129

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  A K+F+ +    +  +N +I A V N     +  ++ +M+  G+  D  T+P +LKA
Sbjct: 130 LVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKA 189

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DI 183
           C           +H L  K GY   +FV NS++  Y+KC    ++ A++LF  M E+ D+
Sbjct: 190 CGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN--DLNGARQLFDRMPEKEDV 247

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL----------DGYAKAGEMNLA 233
           VSWNSMI+     G+  EA RLF EM ++ +++ NT              + K G M + 
Sbjct: 248 VSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQG-MFIH 305

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
             + +   + N+   + ++  Y++ G M  A  +F  M     + W  ++SG+ + G+  
Sbjct: 306 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 365

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA + Y +M +AG KPD   +ISI+AA A SG    GM++HA   K     +  V N+LV
Sbjct: 366 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLV 425

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DMYAK  S+     +F+ M  KD+VSW  ++ G A +G   +AL LF  ++ EG   D  
Sbjct: 426 DMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVM 485

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
               +L AC+    I   V+  +S     G+   V   G ++D+ G  G +  A R+ + 
Sbjct: 486 MISSILLACSGLKLIS-SVKEIHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFEL 543

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDC--LIRLKGSDPGNYTMLS 521
           +  + + + W +++ +C  HN   LA E L+   L++  G +P + +++S
Sbjct: 544 IEFK-DVVSWTSMI-SCYVHNG--LANEALELFHLMKETGVEPDSISLVS 589



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 234/453 (51%), Gaps = 14/453 (3%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE 108
           ++A  ++     C  +  A ++F+ + +  DV  +N++I A   N  + +A R+F +MQ+
Sbjct: 216 FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQK 275

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
             +  + +T+   L+AC   ++      IHA + K  Y+ ++FV N+LI  Y++ G +G 
Sbjct: 276 ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGE 335

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
             A  +F +M + D +SWNSM++G V+ G   EA + + EM +     D V+  +I+   
Sbjct: 336 --AANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAAS 393

Query: 225 AKAGE----MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           A++G     M +     +     ++   +++V  Y+K   M+    +FD+MP K +V WT
Sbjct: 394 ARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWT 453

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            II+G+A+ G    A  L+ +++  G+  D   + SIL AC+   L+    ++H+ I + 
Sbjct: 454 TIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK 513

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
               +  + N +VD+Y +CG++D A  +F  +  KD+VSW +M+     +G   +AL LF
Sbjct: 514 GLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELF 572

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             MK+ G  PD  + V +L A      + KG +    + R  G + +      ++D+  R
Sbjct: 573 HLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYAR 631

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            G L+++ R V +     + ++W +++ A   H
Sbjct: 632 CGTLEKS-RNVFNFIRNKDLVLWTSMINAYGMH 663



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 230/471 (48%), Gaps = 30/471 (6%)

Query: 85  TLIRACVQNSLNAQAFRVFLDM---QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA-L 140
           +L   C + S+N +AF+   D+   Q    F+ +  Y  +L+ C  K      Q +HA +
Sbjct: 46  SLREICKRGSVN-EAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHM 104

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I     F  +F+   L+  Y KCG +    A+KLF  M  + I +WN+MI   V  GE  
Sbjct: 105 ITSNALFNSVFLSTRLVFMYGKCGCL--VDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL 162

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMV 252
            +  L+ EM       DA ++  IL       +     E+         VS     +++V
Sbjct: 163 GSLELYREMRVSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIV 222

Query: 253 WGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
             Y+K  D+  A+ LFDRMP K  +V W  +IS Y+  G + EA RL+ +M++A L P+ 
Sbjct: 223 GMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNT 282

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T ++ L AC +S  +  GM +HA++ K  +  N  V NAL+ MYA+ G +  A ++F  
Sbjct: 283 YTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYN 342

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M   D +SWN+ML G   +G   +AL  +  M+D G  PD    + ++ A   +G    G
Sbjct: 343 MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHG 402

Query: 432 VQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           +Q + Y+M+   G+   ++    ++D+  +   +K    +   MP + + + W T++   
Sbjct: 403 MQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGH 459

Query: 491 RKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
            ++     A+EL  EV     +L+G D  +  M+S+I  A      +++V+
Sbjct: 460 AQNGSHSRALELFREV-----QLEGIDL-DVMMISSILLACSGLKLISSVK 504


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 200/643 (31%), Positives = 321/643 (49%), Gaps = 80/643 (12%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           +T Q  A+I+K   Q D YI+ KLI+S +       A  V   I DP ++ +++LI A  
Sbjct: 33  KTTQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALT 92

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +  L  Q+  VF  M   G+  D+   P L K C   + F + + IH +    G   D F
Sbjct: 93  KAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAF 152

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERD----------------------------- 182
           V  S+   Y +CG +G   A+K+F  M ++D                             
Sbjct: 153 VQGSMFHMYMRCGRMGD--ARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMES 210

Query: 183 ------IVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVS-------------- 216
                 IVSWN +++G  + G   EA  +F ++      P++  VS              
Sbjct: 211 SGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNM 270

Query: 217 -------------------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                               + ++D Y K+G +     LF +         +  + G S+
Sbjct: 271 GRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSR 330

Query: 258 DGDMEMAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           +G ++ A  +F+    +T+    V WT II+G A+ G   EA  L+ +M+ AG+KP+  T
Sbjct: 331 NGLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVT 390

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           + S+L AC     LG G   H    +     N +V +AL+DMYAKCG ++ +  VFN M 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K+LV WN+++ G +MHG+ ++ + +F  +      PD  +F  +L AC   G  D+G +
Sbjct: 451 TKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWK 510

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF  M  +YGI P++EHY CM++LLGR+G+L+EA  L++ MP EP++ +WG LL +CR  
Sbjct: 511 YFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNSCRLQ 570

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
           N V+LAE   + L  L+  +PG Y +LSNI+AA G W +V ++R +M+    +K  G S 
Sbjct: 571 NNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSW 630

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           ++V N V+     D+ HP+ +QI + ++ + K+++  GH   L
Sbjct: 631 IQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEMRKSGHRPNL 673


>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
 gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
          Length = 547

 Score =  332 bits (852), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 155/378 (41%), Positives = 246/378 (65%), Gaps = 1/378 (0%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E  A+  N++++ Y + G+++LA ++F+ +  ++ VSW+T++  +++ G M  A+ LF  
Sbjct: 149 ESHAIVQNSLIEMYTRCGDLSLARKVFDGMREKDAVSWNTLISAHARMGQMRKARELFHS 208

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP KT+V WT ++SGY   G    A  ++ QM+  G +PDD +++++L ACA+ G L LG
Sbjct: 209 MPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGFEPDDVSIVAVLPACAQLGALELG 268

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             ++A  NK+       +CNAL++MYAKCG ++ A+ +F+GM++KD++SW+  + GLA H
Sbjct: 269 RWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAH 328

Query: 391 GQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           G+  +A+ LF  M  EG   P+  TFVG+L AC+HAG +D+G++YF  M+ +YG+ P VE
Sbjct: 329 GRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVE 388

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HYGC++DLLGRSGR++ AL  +  MP+ P+  IWG+LL ACR H+ V+ A    + L+ L
Sbjct: 389 HYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSLLSACRSHSDVDTAVVAAERLVEL 448

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  D GN  ML+N++AA G W  VA+ R +++    +K  G S +EVDN V EF   + L
Sbjct: 449 EPEDVGNLVMLANVYAAAGRWGNVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGEDL 508

Query: 570 HPKSEQIYQMINTLGKDL 587
            P+   I  +I+ L   L
Sbjct: 509 GPELGGIAAIIDILASQL 526



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 209/440 (47%), Gaps = 53/440 (12%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           +L +  +  L  C       +     ++L L +  Y+A +++       +   A +VF  
Sbjct: 8   QLEDAAIARLRACATFRDLLRAHGLAVRLCLSQSSYVATQIVHVCNGHGRAAHAARVFAH 67

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------QEKGVFT--DNFTYPFLLKAC 125
           +  P++HL+N +I+A  QN L+  A  V++ M          G F+  D FTYPFLLKAC
Sbjct: 68  VPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVGDRFTYPFLLKAC 127

Query: 126 NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS 185
            G     L + +HA + + G      V NSLI+ Y++CG   +SLA+K+F  M E+D VS
Sbjct: 128 GGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCG--DLSLARKVFDGMREKDAVS 185

Query: 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-- 243
           WN++I+   + G++ +AR LF  MP++  VSW  ++ GY   G+   A E+F ++     
Sbjct: 186 WNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVEVFRQMQMEGF 245

Query: 244 -----NIVS---------------W-----------------STMVWGYSKDGDMEMAKL 266
                +IV+               W                 + ++  Y+K G +E A  
Sbjct: 246 EPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLGKIYICNALMEMYAKCGCIEEALQ 305

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESG 325
           LF  M  K ++ W+  I G A  G A+EA +L++ M+  G + P+  T + +L+AC+ +G
Sbjct: 306 LFHGMSEKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGITFVGLLSACSHAG 365

Query: 326 LLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAM 383
           LL  G++    +  +Y  + +      +VD+  + G +  A+    GM    D   W ++
Sbjct: 366 LLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIGGMPIPPDGKIWGSL 425

Query: 384 LYGLAMHGQGEKALGLFSRM 403
           L     H   + A+    R+
Sbjct: 426 LSACRSHSDVDTAVVAAERL 445



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 156/368 (42%), Gaps = 54/368 (14%)

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP--------- 309
           G    A  +F  +PA  L     +I  YA+  + ++A  +Y +M      P         
Sbjct: 56  GRAAHAARVFAHVPAPNLHLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPDPSSSGGFSVG 115

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  T   +L AC       LG +VHA + +   + +  V N+L++MY +CG L  A  VF
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD------------------------ 405
           +GM +KD VSWN ++   A  GQ  KA  LF  M D                        
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVE 235

Query: 406 -------EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
                  EGF PD  + V VL AC   G ++ G ++ Y+    +G+L ++     ++++ 
Sbjct: 236 VFRQMQMEGFEPDDVSIVAVLPACAQLGALELG-RWIYAYCNKHGMLGKIYICNALMEMY 294

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            + G ++EAL+L   M  E + I W T +G    H     A ++ + + R     P   T
Sbjct: 295 AKCGCIEEALQLFHGMS-EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNGIT 353

Query: 519 MLSNIFAAT--GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
            +  + A +  G  ++      +MK+    +PS          V  +     L  +S +I
Sbjct: 354 FVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPS----------VEHYGCVVDLLGRSGRI 403

Query: 577 YQMINTLG 584
            + ++T+G
Sbjct: 404 QRALDTIG 411


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/630 (31%), Positives = 327/630 (51%), Gaps = 63/630 (10%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNT 85
           +L     + A +    L  + +I   +++    C  +  A ++F+++ +    D+  +N+
Sbjct: 142 SLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNS 201

Query: 86  LIRACVQNSLNAQAFRVFLDMQEK---GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           ++ A VQ   +  A R+   M       +  D  T   +L AC         + +H    
Sbjct: 202 ILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSV 261

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           + G   D+FV N+L+  Y+KC    ++ A K+F  + ++D+VSWN+M+ G  + G    A
Sbjct: 262 RNGLVDDVFVGNALVSMYAKCS--KMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSA 319

Query: 203 RRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWG 254
             LF  M E D     ++W+ ++ GYA+ G    A ++F ++       N+V+ ++++ G
Sbjct: 320 LSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSG 379

Query: 255 ------------------------------------------YSKDGDMEMAKLLFDRMP 272
                                                     Y+K     +A+ +FD + 
Sbjct: 380 CASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIE 439

Query: 273 AK--TLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLG 328
            K   +V WT++I GYA+ G A +A +L+ Q+  ++  LKP+  TL   L ACA  G L 
Sbjct: 440 GKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELR 499

Query: 329 LGMKVHASINKYRFKCNT-NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
           LG ++HA   +   +     V N L+DMY+K G +D A +VF+ M  +++VSW +++ G 
Sbjct: 500 LGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGY 559

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
            MHG+GE+AL LF +M+  GF  D  TF+ VL AC+H+G +D+G+ YF+ M + +GI P 
Sbjct: 560 GMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPG 619

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            EHY CM+DLLGR+GRL EA+ L+++M +EP A++W  LL A R H  +EL E     L 
Sbjct: 620 AEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLT 679

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L   + G+YT+LSN++A    W  VA +R  MK T  +K  G S ++       F V D
Sbjct: 680 ELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGD 739

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           + HP+SEQIY ++  L K +K +G+  + S
Sbjct: 740 RSHPESEQIYNLLLDLIKRIKDMGYVPQTS 769



 Score =  207 bits (528), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 150/492 (30%), Positives = 238/492 (48%), Gaps = 67/492 (13%)

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V  +N LIR  V+  L       +  MQ  G   D++T+PF+LKAC           +HA
Sbjct: 92  VFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHA 151

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKG 196
           ++   G   ++F+ NS++  Y +CG   +  A ++F  + ER   DIVSWNS++A  V+G
Sbjct: 152 IVCANGLGSNVFICNSIVAMYGRCG--ALDDAHQMFDEVLERKIEDIVSWNSILAAYVQG 209

Query: 197 GELSEARRLFDEMPER-------DAVSW-------------------------------- 217
           G+   A R+   M          DA++                                 
Sbjct: 210 GQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDV 269

Query: 218 ---NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
              N ++  YAK  +MN A ++FE I  +++VSW+ MV GYS+ G  + A  LF  M  +
Sbjct: 270 FVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEE 329

Query: 275 TL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
            +    + W+ +I+GYA+KG   EA  ++ QM+  GL+P+  TL S+L+ CA  G L  G
Sbjct: 330 DIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYG 389

Query: 331 MKVHASINKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWN 381
            + HA + K     N N       V N L+DMYAKC S   A S+F+ +  KD  +V+W 
Sbjct: 390 KQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWT 449

Query: 382 AMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSM 438
            M+ G A HG+   AL LF+++  +     P+ +T    L AC   G +  G Q + Y++
Sbjct: 450 VMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYAL 509

Query: 439 ERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
             +     +V + G C+ID+  +SG +  A  +  +M +  N + W +L+     H   E
Sbjct: 510 RNENE--SEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGE 566

Query: 498 LAEEVLDCLIRL 509
            A  + D + +L
Sbjct: 567 EALHLFDQMQKL 578



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 156/330 (47%), Gaps = 22/330 (6%)

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG--VSLAKKLFMSMGERDIVSWNSMIAG 192
           ++ H  I+  G F ++F  +  + +Y +CG     VSL ++L  S     +  WN++I  
Sbjct: 47  KLAHQQIFVHG-FTEMF--SYAVGAYIECGASAEAVSLLQRLIPS--HSTVFWWNALIRR 101

Query: 193 LVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----N 244
            VK G L +    + +M       D  ++  +L    +   +     +   +       N
Sbjct: 102 SVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSN 161

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT---LVPWTIIISGYAEKGMAKEAARLYDQ 301
           +   +++V  Y + G ++ A  +FD +  +    +V W  I++ Y + G ++ A R+  +
Sbjct: 162 VFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFR 221

Query: 302 M---EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           M       L+PD  TL++IL ACA    L  G +VH    +     +  V NALV MYAK
Sbjct: 222 MGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAK 281

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           C  ++ A  VF G+ KKD+VSWNAM+ G +  G  + AL LF  M++E    D  T+  V
Sbjct: 282 CSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAV 341

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +      G   + +  F  M+  YG+ P V
Sbjct: 342 IAGYAQKGHGFEALDVFRQMQL-YGLEPNV 370



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 109/234 (46%), Gaps = 12/234 (5%)

Query: 262 EMAKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           E   LL   +P+  T+  W  +I    + G+  +    Y QM+  G  PD  T   +L A
Sbjct: 77  EAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKA 136

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DL 377
           C E   L  G  VHA +       N  +CN++V MY +CG+LD+A  +F+ + ++   D+
Sbjct: 137 CGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDI 196

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDE---GFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           VSWN++L      GQ   AL +  RM +       PD  T V +L AC     +  G Q 
Sbjct: 197 VSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQV 256

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWG 484
                R+ G++  V     ++ +  +  ++ EA ++ + +     V  NA++ G
Sbjct: 257 HGFSVRN-GLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTG 309


>gi|357445603|ref|XP_003593079.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360447|gb|ABN08457.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355482127|gb|AES63330.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 558

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 183/550 (33%), Positives = 309/550 (56%), Gaps = 18/550 (3%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPY-----IAPKLISSLALCRQMGLAIKVFNDIQ 76
           Q L+  KN++  KQ+ A  +K   Q  P+     +  +++   A    +  A K+F+ + 
Sbjct: 15  QFLNNAKNISHLKQIHALFLKHLPQNAPHHFFNRLLFRVLHFSAEKSNLYYAHKLFDTMP 74

Query: 77  D-PDVHLYNTLIRACVQNSLN-AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           +  +  ++ +LIRA + +  +       F  M +KG+    FT+  +L AC         
Sbjct: 75  NCSNCFIWTSLIRAFLSHHTHFCHCISTFARMHQKGILPSGFTFSLVLNACGRVPAGFEG 134

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +HA + + G+ G+  V  +L+D Y+KCG   V  A+ +F  + +RD+V+W +MI G  
Sbjct: 135 KQVHARLVQSGFLGNKIVQTALLDMYAKCG--HVCDARDVFDGIVDRDVVAWTAMICGYA 192

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           K G + +AR LFD M ER++ +W T++ GYA  G+M  A EL++ +  ++ V+W  M+ G
Sbjct: 193 KAGRMVDARFLFDNMGERNSFTWTTMVAGYANYGDMKAAMELYDVMNGKDEVTWVAMIAG 252

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWT-----IIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           Y K G++  A+ +FD +     VPW       +++ YA+ G A+EA  +Y++M  A +K 
Sbjct: 253 YGKLGNVSEARRIFDEIT----VPWNPSTCAALLACYAQNGHAREAIEMYEKMRRAKIKV 308

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
            D  ++  ++ACA+   + +   +  +I +   +    V NAL+ M +KCG++D A   F
Sbjct: 309 TDVAMVGAISACAQLRDIRMSNSLTYNIEEGFCEKTHIVSNALIHMQSKCGNIDLAWREF 368

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           N M  +DL +++AM+   A HG+ + A+ LF +M+ EG  P++ TFVGVL AC+ +G I+
Sbjct: 369 NIMRNRDLYTYSAMIAAFAEHGKSQDAIDLFLKMQQEGLKPNQVTFVGVLNACSTSGLIE 428

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +G ++F  M   YGI P  EHY CM+DLLGR+G+L++A  L++      +A  WG+LL A
Sbjct: 429 EGCRFFQIMTEMYGIEPLPEHYTCMVDLLGRAGQLEKAYSLIKENSTSADATTWGSLLAA 488

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           CR +  VEL E     L  +  +D GNY +L+N +A+   W     V+  M K   +KPS
Sbjct: 489 CRVYGNVELGEIAARHLFEIDPTDSGNYVLLANTYASNDKWECAEEVKKLMSKKGMKKPS 548

Query: 550 GASSVEVDNE 559
           G S ++ + +
Sbjct: 549 GYSWIQRETK 558


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 155/371 (41%), Positives = 243/371 (65%)

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           + V  N++++ Y K   ++ A  +FE++  R+ VSW+T++ G+ + G M  A+ +F+ M 
Sbjct: 151 NTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQ 210

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            KT+  WT I+SGYA  G   +A   + +M+  G++PD+ +L+S+L  CA+ G L LG  
Sbjct: 211 DKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKW 270

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H   +K  F  N  VCNAL++MYAKCGS+D    +F+ M ++D++SW+ M+ GLA HG+
Sbjct: 271 IHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGR 330

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
             +A+ LF  M+     P   TFVG+L AC HAG +++G++YF SM+RDY I P VEHYG
Sbjct: 331 AREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYG 390

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           C+++LLG SGRL +AL LV+ MP +P++ IWG+LL +CR H  +++A   ++ L+ L+ +
Sbjct: 391 CLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPA 450

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           D GNY +LSN++A  G W+ V+ +R  M+    +K  G SS+EVDN V EF+  D   P 
Sbjct: 451 DTGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDNMVQEFASGDDSKPF 510

Query: 573 SEQIYQMINTL 583
           S+ I +++  L
Sbjct: 511 SKAICRVLKLL 521



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 203/417 (48%), Gaps = 54/417 (12%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG---LAIKVFNDIQDPDV 80
           L  C N+ + K++ A I+K  L +  ++  K++    +C   G    A  +F  + DP+ 
Sbjct: 21  LKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVD---VCNHYGETEYANLLFKGVADPNA 77

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDM-----QEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            LYN +IRA   N +   A  V+  M      E  +F D FT+PF++K+C G   + L +
Sbjct: 78  FLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGK 137

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H  ++K G   +  V NSL++ Y KC    +  A ++F  M ERD VSWN++I+G V+
Sbjct: 138 QVHGHVFKFGQKSNTVVENSLVEMYVKCD--SLDDAHRVFEEMTERDAVSWNTLISGHVR 195

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH------------- 242
            G++  AR +F+EM ++   SW  I+ GYA+ G    A E F ++               
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 243 --------------------------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                                     RNI   + ++  Y+K G ++  + LFD+M  + +
Sbjct: 256 LPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDV 315

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           + W+ +I G A  G A+EA  L+ +M++A ++P   T + +L ACA +GLL  G++   S
Sbjct: 316 ISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFES 375

Query: 337 INK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-DLVSWNAMLYGLAMHG 391
           + + Y  +        LV++    G LD A+ +   M +K D   W ++L     HG
Sbjct: 376 MKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHG 432



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 147/367 (40%), Gaps = 87/367 (23%)

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-----EEAGLKPDDGT 313
           G+ E A LLF  +       +  +I  Y    +   A  +Y QM      E  + PD  T
Sbjct: 60  GETEYANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQMLGNPHGENPIFPDKFT 119

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
              ++ +CA      LG +VH  + K+  K NT V N+LV+MY KC SLD+A  VF  MT
Sbjct: 120 FPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMT 179

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE--------------------------- 406
           ++D VSWN ++ G    GQ  +A  +F  M+D+                           
Sbjct: 180 ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRR 239

Query: 407 ----GFGPDKYTFVGVLCACTH----------------AGF------------------- 427
               G  PD+ + V VL  C                  AGF                   
Sbjct: 240 MQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEMYAKCGS 299

Query: 428 IDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIW 483
           ID+G + F  M ERD      V  +  MI  L   GR +EA+ L Q M    +EP+ I +
Sbjct: 300 IDQGRRLFDQMKERD------VISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITF 353

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATGDWNKVANVRLQMK 541
             LL AC     +       + + R    +PG  +Y  L N+   +G  ++     L++ 
Sbjct: 354 VGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQA----LELV 409

Query: 542 KTRAQKP 548
           K   +KP
Sbjct: 410 KKMPRKP 416



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 130/296 (43%), Gaps = 18/296 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC +L+   ++F ++     +RD      LIS      QM  A  +F ++QD  +  +  
Sbjct: 164 KCDSLDDAHRVFEEMT----ERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIFSWTA 219

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++    +    A A   F  MQ  G+  D  +   +L  C       L + IH    K G
Sbjct: 220 IVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAG 279

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  +I V N+LI+ Y+KCG   +   ++LF  M ERD++SW++MI GL   G   EA  L
Sbjct: 280 FLRNICVCNALIEMYAKCG--SIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIEL 337

Query: 206 FDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYS 256
           F EM     E   +++  +L   A AG +N     FE +         +  +  +V    
Sbjct: 338 FQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLG 397

Query: 257 KDGDMEMAKLLFDRMPAKTLVP-WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
             G ++ A  L  +MP K   P W  ++S     G  K A    + + E  L+P D
Sbjct: 398 LSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLE--LEPAD 451


>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05750, chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 265/452 (58%), Gaps = 42/452 (9%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL----------------- 221
           IV W S +A   + G+LSEA   F  M     E + +++ T+L                 
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116

Query: 222 ---------------------DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                                D Y+K  ++  A ++F  +  +N VSW+TM+ G+ ++G+
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E+A  LFD MP +  + WT +I+G  + G +++A   + QM+ +G+  D  ++I++LAA
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA+ G L LG+ VH  +    FK N  + N+L+DMY++CG ++ A  VF  M K+ LVSW
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSW 296

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N+++ G A++G  +++L  F  M+ EGF PD  ++ G L AC+HAG ++KG++ F +M+ 
Sbjct: 297 NSIIVGFAVNGFADESLEFFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKS 356

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            + I P++EHYGC++DL GR+GRL++AL +++ MP++PN ++ G+LL ACR H  V LAE
Sbjct: 357 VHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            ++  L +L       Y +LSNI+AA G W+   NVR  MK    QK  G SSVE+D +V
Sbjct: 417 RLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKV 476

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           HEF   D  H  ++ IY M++ L  +LK  G+
Sbjct: 477 HEFVAGDNYHADADNIYSMLDLLCHELKVCGY 508



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 194/417 (46%), Gaps = 69/417 (16%)

Query: 42  KLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR 101
           KL+  R P    + ISS           K   +  DP V   ++L R C    L ++A  
Sbjct: 31  KLNFPRSPNSPHRNISS-----------KFNPNSVDPIVLWTSSLARYCRNGQL-SEAAA 78

Query: 102 VFLDMQEKGVFTDNFTYPFLLKACNG--KNWFHLVQMIHALIYKCGY---FGDIFVPNSL 156
            F  M+  GV  ++ T+  LL AC       F     +H   Y C Y    G + V  +L
Sbjct: 79  EFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHG--YACKYGLDTGHVMVGTAL 136

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS 216
           ID YSKC  +G   A+K+F ++G ++ VSWN+M+ G ++ GE+  A +LFDEMP RDA+S
Sbjct: 137 IDMYSKCAQLG--HARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAIS 194

Query: 217 WNTILDGYAKAGEMNLAFELFEKIP------------------------------HR--- 243
           W  +++G  K G    A E F ++                               HR   
Sbjct: 195 WTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVM 254

Query: 244 ------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                 NI   ++++  YS+ G +E A+ +F +M  +TLV W  II G+A  G A E+  
Sbjct: 255 PQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLE 314

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH---ASINKYRFKCNTNVCNALVD 354
            +  M++ G KPD  +    L AC+ +GL+  G+++     S++K   +     C  +VD
Sbjct: 315 FFXAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGC--IVD 372

Query: 355 MYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ---GEKALGLFSRMKDEG 407
           +Y + G L++A+++   M  K + V   ++L     HG     E+ +    ++  EG
Sbjct: 373 LYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEG 429



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
           N  S FN  +   +V W + L     +GQ  +A   F+RM+  G  P+  TF+ +L AC 
Sbjct: 44  NISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSAC- 102

Query: 424 HAGFIDKGVQYFYSMER---DYGI-LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            A F  +   +  S+      YG+    V     +ID+  +  +L  A ++  ++ V+ N
Sbjct: 103 -ADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVK-N 160

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           ++ W T+L    ++  +ELA ++ D    +   D  ++T L N     G   +      Q
Sbjct: 161 SVSWNTMLNGFMRNGEIELAIQLFD---EMPTRDAISWTALINGLLKHGYSEQALECFHQ 217

Query: 540 MKKT 543
           M+++
Sbjct: 218 MQRS 221



 Score = 42.0 bits (97), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
           I+  LI   + C  +  A +VF  +    +  +N++I     N    ++   F  MQ++G
Sbjct: 264 ISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKEG 323

Query: 111 VFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
              D  +Y   L AC+       G   F  ++ +H +  +  ++G I      +D Y + 
Sbjct: 324 FKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCI------VDLYGRA 377

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDA 214
           G +  +L     M M   ++V   S++A     G+++ A RL   +    PE DA
Sbjct: 378 GRLEDALNMIEEMPMKPNEVV-LGSLLAACRTHGDVNLAERLMKHLFKLDPEGDA 431


>gi|357483943|ref|XP_003612258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513593|gb|AES95216.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 907

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 299/573 (52%), Gaps = 52/573 (9%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN- 126
           A KVF  +   D+  YN+++    QN     A + F  M E+ V + N      +  C+ 
Sbjct: 161 AEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVNNCDL 220

Query: 127 GKNW--FHLVQMIHALIYK---CGY--FGDIFVPNSLIDSYSKCGVVG------------ 167
           G  W  F  +   +A+ +    CG+   G I     L D      VV             
Sbjct: 221 GSAWELFEKIPDPNAVSWVTMLCGFARHGKIVEARKLFDRMPCKNVVSWNAMIAAYVQDL 280

Query: 168 -VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP---------------- 210
            +  A KLF     +D VSW +MI G V+ G+L EAR ++++MP                
Sbjct: 281 QIDEAVKLFKETPYKDCVSWTTMINGYVRVGKLDEAREVYNQMPYKDVAAKTALMSGLIQ 340

Query: 211 ---------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
                          +RDA+ WN+++ GY ++G M+ A  LF ++P +N VSW+TM+ GY
Sbjct: 341 NGRIDEASQVFSQLNKRDAICWNSMIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGY 400

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           ++ G+M+ A  +F+ M  + ++ W  +I+G+ + G+  +A +    M + G KPD  T  
Sbjct: 401 AQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFA 460

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L++CA    L +G ++H  I K  +  +  V NAL+ MYAKCG + +A  VF  +   
Sbjct: 461 CSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGV 520

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           DL+SWN+++ G A++G   +A   F +M  EG  PD+ TF+G+L AC+HAG  ++GV  F
Sbjct: 521 DLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLTNQGVDLF 580

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   + I P  EHY C++DLLGR GRL+EA  +V+ M V+ NA +WG+LL ACR H  
Sbjct: 581 KCMIEGFAIEPLAEHYSCLVDLLGRMGRLEEAFNIVRGMKVKANAGLWGSLLAACRVHKN 640

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +EL +     L+ L+  +  NY  LSN+ A  G W  V  +R+ M++ RA K  G S +E
Sbjct: 641 MELGKIAALRLLELEPHNASNYITLSNMHAEAGRWEDVERLRVLMRERRAGKLPGCSWIE 700

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           V N++  F   D    ++E I  ++NTL   ++
Sbjct: 701 VQNQIQNFVSDDPGKLRTESIKIILNTLSAHMR 733



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 127/527 (24%), Positives = 240/527 (45%), Gaps = 77/527 (14%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           +K+  L K   +++ K++F+ +I     ++      +++  A   ++  A ++F+ +   
Sbjct: 22  KKIIYLGKQGKIDEAKRVFSNVI----HKNHATYNSMVTVFAKNGRVSDARQLFDKMSQR 77

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           ++  +NT+I   + N++  +A ++F  M E+    DNF++  ++     K      + + 
Sbjct: 78  NLVSWNTMIAGYLHNNMVEEAHKLFDLMAER----DNFSWALMITCYTRKGMLEKARELF 133

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
            L+       D    N++I  Y+K G      A+K+F  M  +D+VS+NSM+AG  + G+
Sbjct: 134 ELVPDKL---DTACWNAMIAGYAKKG--RFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGK 188

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
           +  A + F+ M ER+ VSWN ++ G+    ++  A+ELFEKIP  N VSW TM+ G+++ 
Sbjct: 189 MGLAMKFFERMAERNVVSWNLMVAGFVNNCDLGSAWELFEKIPDPNAVSWVTMLCGFARH 248

Query: 259 GDMEMAKLLFDRMPAKTL-------------------------------VPWTIIISGYA 287
           G +  A+ LFDRMP K +                               V WT +I+GY 
Sbjct: 249 GKIVEARKLFDRMPCKNVVSWNAMIAAYVQDLQIDEAVKLFKETPYKDCVSWTTMINGYV 308

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC--- 344
             G   EA  +Y+QM       D     ++++   ++G +    +V + +NK    C   
Sbjct: 309 RVGKLDEAREVYNQMP----YKDVAAKTALMSGLIQNGRIDEASQVFSQLNKRDAICWNS 364

Query: 345 ------------------------NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
                                   N    N ++  YA+ G +D A  +F  M  ++++SW
Sbjct: 365 MIAGYCQSGRMSEALNLFRQMPVKNAVSWNTMISGYAQAGEMDRATEIFEAMGVRNVISW 424

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N+++ G   +G    AL     M  EG  PD+ TF   L +C +   +  G Q  + +  
Sbjct: 425 NSLITGFLQNGLYLDALKSLVLMGQEGKKPDQSTFACSLSSCANLAALQVGKQ-LHELIL 483

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
             G +  +     +I +  + G ++ A ++ + +    + I W +L+
Sbjct: 484 KSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIE-GVDLISWNSLI 529



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 180/400 (45%), Gaps = 65/400 (16%)

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           +++ + N  I  L K G++ EA+R+F  +  ++  ++N+++  +AK G ++ A +LF+K+
Sbjct: 15  KNVFNQNKKIIYLGKQGKIDEAKRVFSNVIHKNHATYNSMVTVFAKNGRVSDARQLFDKM 74

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
             RN+VSW+TM+ GY  +  +E A  LFD M  +    W ++I+ Y  KGM ++A  L++
Sbjct: 75  SQRNLVSWNTMIAGYLHNNMVEEAHKLFDLMAERDNFSWALMITCYTRKGMLEKARELFE 134

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
                 L PD                                K +T   NA++  YAK G
Sbjct: 135 ------LVPD--------------------------------KLDTACWNAMIAGYAKKG 156

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
             D+A  VF  M  KDLVS+N+ML G   +G+   A+  F RM +           G + 
Sbjct: 157 RFDDAEKVFEKMPVKDLVSYNSMLAGYTQNGKMGLAMKFFERMAERNVVSWNLMVAGFVN 216

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
            C     +    + F  +       P    +  M+    R G++ EA +L   MP + N 
Sbjct: 217 NCD----LGSAWELFEKIPD-----PNAVSWVTMLCGFARHGKIVEARKLFDRMPCK-NV 266

Query: 481 IIWGTLLGA----CRKHNAVELAEEV--LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           + W  ++ A     +   AV+L +E    DC+         ++T + N +   G  ++  
Sbjct: 267 VSWNAMIAAYVQDLQIDEAVKLFKETPYKDCV---------SWTTMINGYVRVGKLDEAR 317

Query: 535 NVRLQMK-KTRAQKPSGASSVEVDNEVHEFS-VCDQLHPK 572
            V  QM  K  A K +  S +  +  + E S V  QL+ +
Sbjct: 318 EVYNQMPYKDVAAKTALMSGLIQNGRIDEASQVFSQLNKR 357



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 6/188 (3%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS  A   +M  A ++F  +   +V  +N+LI   +QN L   A +  + M ++G   D
Sbjct: 396 MISGYAQAGEMDRATEIFEAMGVRNVISWNSLITGFLQNGLYLDALKSLVLMGQEGKKPD 455

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T+   L +C       + + +H LI K GY  D+FV N+LI  Y+KCG  GV  A+K+
Sbjct: 456 QSTFACSLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCG--GVQSAEKV 513

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEM 230
           F  +   D++SWNS+I+G    G  +EA   F++M       D V++  +L   + AG  
Sbjct: 514 FKDIEGVDLISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACSHAGLT 573

Query: 231 NLAFELFE 238
           N   +LF+
Sbjct: 574 NQGVDLFK 581



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 3/107 (2%)

Query: 23  NLHKCKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           +L  C NL      KQL   I+K     D +++  LI+  A C  +  A KVF DI+  D
Sbjct: 462 SLSSCANLAALQVGKQLHELILKSGYINDLFVSNALIAMYAKCGGVQSAEKVFKDIEGVD 521

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           +  +N+LI     N    +AF  F  M  +G   D  T+  +L AC+
Sbjct: 522 LISWNSLISGYALNGYANEAFWAFEQMSSEGTVPDEVTFIGMLSACS 568


>gi|359474320|ref|XP_002270938.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g22760-like [Vitis vinifera]
          Length = 580

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 314/566 (55%), Gaps = 42/566 (7%)

Query: 29  NLNQTKQLFAQIIKLDLQR-DPYIAPK-LISSLALCRQMGLAI-KVFNDIQDPDVHLYNT 85
           ++ Q KQ+ A I+   L   +P +A + LIS+      +   +  V +  + PD   +  
Sbjct: 16  SVKQAKQVHALILIHGLSHLEPILARQILISASNYSATVAQYVHSVLHHSKSPDSFSWAC 75

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
            IR   Q+    +AF +++ MQ  G+    F     LKAC    +      IH  + K G
Sbjct: 76  AIRFSTQHGQFKEAFALYVQMQRWGLCPTTFALSSALKACARIAYRMGGISIHGQVQKFG 135

Query: 146 YF--GD-IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER--------------------- 181
           +   GD I+V  +L+D Y K G   + +A+K+F  M ER                     
Sbjct: 136 FSCGGDGIYVETALVDFYCKLG--DMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVA 193

Query: 182 ----------DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231
                     D++SWNSMI+G  + G++ +A  LF +MPER+  SWN ++ G+ + G+++
Sbjct: 194 QRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDID 253

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
            A   F+ +P +N VSW TM+ GYSK GD++ A  LFD++  K L+ +  +I+ YA+   
Sbjct: 254 SARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSR 313

Query: 292 AKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
             EA  L++ M      ++PD+ TL S+++AC++ G L  G  + + + +   + + ++ 
Sbjct: 314 PNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLA 373

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
            AL+D+YAKCGS+D A  +F+G+ KKDLV++ AM+ G  ++G+   A+ LF  M D    
Sbjct: 374 TALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIF 433

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  TF+G+L A  HAG +++G + F SM++ Y ++P V+HYG M+DL GR+GRL+EAL 
Sbjct: 434 PNSITFIGLLTAYNHAGLVEEGYRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALE 492

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           L++SMP++P+A +WG LL ACR HN VE  E        L+    G  ++LSNI+A+   
Sbjct: 493 LIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGER 552

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVE 555
           W+ V  +R   K+    K  G S +E
Sbjct: 553 WDDVKRLRKVTKEKGFSKIPGCSWME 578


>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 199/613 (32%), Positives = 340/613 (55%), Gaps = 62/613 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-----QMGLAIKVFNDIQDP 78
           L  C+++    Q+ A+I ++ LQ +     K++     C       +  A +V   +Q P
Sbjct: 23  LQSCESMAHLTQIHAKIFRVGLQDNMDTLTKIV---LFCTDPSRGSIRYAERVLGFVQSP 79

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA--CNGKNWFHLVQ- 135
            + +YN +I+A  ++    +   +F +++++G+  DNFT P + KA  C GK    +V+ 
Sbjct: 80  CLVMYNLMIKAVAKDENFRKVLVLFSELRKQGLNPDNFTLPPVFKAMGCLGK----VVEG 135

Query: 136 -MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
             +H  + K G+  D  V NS++  Y   G + V  AKK+F  + ERD+VSWN +I+  V
Sbjct: 136 EKVHGYVVKSGF--DACVCNSVMGMYGALGKMEV--AKKVFDEIPERDVVSWNVLISSYV 191

Query: 195 KGGELSEARRLFDEM--------PERDAVSW----------------------------- 217
              +  +A  +F  M         E   VS                              
Sbjct: 192 GHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDAELEMTTK 251

Query: 218 --NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
             N +LD Y K G ++ A  +F+++ ++N++ W++MV GY+ +G ++ A+ LF+R P + 
Sbjct: 252 IGNALLDMYCKCGCVDKARAIFDEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRD 311

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V WT +I+GY +  +  EA +L+ +M+   L+PD+  L+++L  CA++G L  G  +H 
Sbjct: 312 IVLWTAMINGYVQFNLFDEALKLFRKMQIQRLRPDNFILVTLLKGCAQTGALEQGKWLHG 371

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            I++     +  V  ALVD+YAKCG ++ A+ VF  M ++D  SW +++YGLA++G   K
Sbjct: 372 YIHENSITLDRVVGTALVDVYAKCGCVEKALEVFYEMKERDTASWTSVIYGLAVNGMTSK 431

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           AL  FS+M++ GF PD  TF+GVL AC H G +++G +YF SM + Y I P+ EHY C+I
Sbjct: 432 ALDFFSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLI 491

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAII---WGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           DLL R+G L EA  L++ +P+E + I+   + +LL ACR +  ++++E V   L R++  
Sbjct: 492 DLLCRAGLLDEAELLLEMIPIESSDIVVPLYCSLLSACRNYGNLKMSERVGRRLERVEVK 551

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           D   +T+L++++A+   W  V  VR +MK+   +K  G SS+EV+  +HEF V    H +
Sbjct: 552 DSSVHTLLASVYASANRWEDVTTVRRKMKELGIRKFPGCSSIEVNGVLHEFMVGGPSHME 611

Query: 573 SEQIYQMINTLGK 585
            + I+ ++  + K
Sbjct: 612 MDDIHSVLGQVTK 624


>gi|125548358|gb|EAY94180.1| hypothetical protein OsI_15952 [Oryza sativa Indica Group]
          Length = 655

 Score =  332 bits (851), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 186/558 (33%), Positives = 302/558 (54%), Gaps = 41/558 (7%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------- 106
           L++  A C ++  A ++FN I D +V  +N ++    +N +  +A  +F DM        
Sbjct: 102 LLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELF-DMMPWRDDVS 160

Query: 107 --------------QEKGVFTDNFTYPFLLKACNG--KNWFHLVQMIHALIYKCGYFGDI 150
                         +E     D+   P     CN     +  L  M  A +     FG +
Sbjct: 161 WLTMISGYIKRKHVREARELFDSMPSP-PTSVCNALLSGYVELGYMRAAEVL----FGQM 215

Query: 151 FVPNS-----LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              N      +I  Y++ G +G+  A++LF  M E+D++S  +++ G ++ G +  A ++
Sbjct: 216 QTRNPVSWNVMITGYARAGSMGI--AQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKV 273

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           F +MP RD V+WNT++DG+ +   ++ A +LF ++P R+ +SW  ++ GY + GDM+ A 
Sbjct: 274 FKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWHAILQGYVQQGDMDSAN 333

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           + F R P K  + W  +ISGY ++G    A  L  +M   GLKPD  TL  +++ CA   
Sbjct: 334 VWFPRAPNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLV 389

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            LG G  VH    K  F+ +  V ++L+ MY+KCG +  A  VF  + ++D V+WNAM+ 
Sbjct: 390 SLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIA 449

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
             A HG  ++AL +F  M   GF PD  TF+ +L AC H G++ +G  +F SM+ D+ ++
Sbjct: 450 TYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLV 509

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P+ +HY CM+DLLGRSG + +A    + +P +     W TL  AC  H  ++L E +   
Sbjct: 510 PRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSACNSHGEIQLGEIIARN 569

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +++ + SD G YT+LSNI+AA   W+  A+VR  MK+   +K +G S +E+  EV  FS 
Sbjct: 570 VLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSS 629

Query: 566 CDQLHPKSEQIYQMINTL 583
            D  HP  EQI Q ++++
Sbjct: 630 NDSNHPLIEQICQEVDSI 647



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 173/341 (50%), Gaps = 53/341 (15%)

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+F  N+ I+ + +     V+ A+++F  M ER++ +WN M++GL++   L+EAR++FD
Sbjct: 32  GDVFQSNTAINEHFR--AGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFD 89

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP R++VSW  +L GYA+ G +  A ELF +IP RN+VSW+ MV GY+++G ++ A+ L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MP +  V W  +ISGY ++   +EA  L+D M                         
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPP--------------------- 188

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
                             T+VCNAL+  Y + G +  A  +F  M  ++ VSWN M+ G 
Sbjct: 189 ------------------TSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGY 230

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILP 446
           A  G    ++G+  R+ DE    D  +   ++      G +D   + F  M  RD     
Sbjct: 231 ARAG----SMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRD----- 281

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
               +  M+D   R+ RL +AL+L   MP + + I W  +L
Sbjct: 282 -TVAWNTMMDGFVRNDRLDDALKLFSEMP-DRDQISWHAIL 320



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 220/481 (45%), Gaps = 62/481 (12%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK---ACNGKNWFHLVQ 135
           DV   NT I    +    A A RVF +M E+ VFT N     L++       +  F  + 
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           + +++ +            +L+  Y++CG   V+ A++LF  + +R++VSWN+M++G  +
Sbjct: 93  VRNSVSWA-----------ALLTGYARCG--RVAEARELFNRIPDRNVVSWNAMVSGYAR 139

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            G +  AR LFD MP RD VSW T++ GY K   +  A ELF+ +P       + ++ GY
Sbjct: 140 NGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGY 199

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            + G M  A++LF +M  +  V W ++I+GYA  G    A RL+D+M E     D  +  
Sbjct: 200 VELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPE----KDVLSRT 255

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           +I+    ++G +    KV   +       +T   N ++D + +   LD+A+ +F+ M  +
Sbjct: 256 AIMRGYLQNGSVDAAWKVFKDMPHR----DTVAWNTMMDGFVRNDRLDDALKLFSEMPDR 311

Query: 376 DLVSWNAMLYGLAMHG---------------------------QGEKALGLFSRMKDEGF 408
           D +SW+A+L G    G                           + E AL L S M   G 
Sbjct: 312 DQISWHAILQGYVQQGDMDSANVWFPRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGL 371

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH----YGCMIDLLGRSGRL 464
            PD+ T   V+  C  A  +  G      M   + I    EH       +I +  + G +
Sbjct: 372 KPDQATLSVVISIC--ASLVSLGCG---KMVHLWAIKTGFEHDALVMSSLISMYSKCGLI 426

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
            EA ++ + + ++ + + W  ++     H   + A +V D + +  G  P + T LS + 
Sbjct: 427 SEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDMMTK-AGFRPDHATFLSILS 484

Query: 525 A 525
           A
Sbjct: 485 A 485



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 100/278 (35%), Gaps = 71/278 (25%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           IK   + D  +   LIS  + C  +  A +VF  I   D   +N +I     + L  +A 
Sbjct: 402 IKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEAL 461

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI-----FVPNS 155
           +VF  M + G   D+ T+  +L AC  K +         L   C +F  +      VP S
Sbjct: 462 KVFDMMTKAGFRPDHATFLSILSACAHKGY---------LYEGCYHFRSMQEDWNLVPRS 512

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDA 214
             D YS                           M+  L + G + +A      +P +   
Sbjct: 513 --DHYS--------------------------CMVDLLGRSGFIHQAYDFTRRIPSDHRT 544

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
            +W T+       GE+ L      +I  RN++           DG M             
Sbjct: 545 TAWETLFSACNSHGEIQLG-----EIIARNVLK------ARPSDGGM------------- 580

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
               +T++ + YA K M   AA +   M+E GLK + G
Sbjct: 581 ----YTLLSNIYAAKEMWSSAASVRGFMKERGLKKETG 614


>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 484

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 157/360 (43%), Positives = 235/360 (65%), Gaps = 6/360 (1%)

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +LA +LF+ +P R++V+++TM+ G  ++G +  A+ +FD MPA   V WT +I G  + G
Sbjct: 123 HLAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNG 182

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              EA   +  M   G++PD  TL++ ++ACAE G LGLGM VH  +   R + N  V N
Sbjct: 183 RHDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVAN 242

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+DMYA+CG +D A  VF  + K+ +VSWN+M+ G A +GQ   A+  F  M+ EGF P
Sbjct: 243 SLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKP 302

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TF GVL AC+HAG  D+G++Y+ +M  ++GI  ++EHYGC++DLLGR+GRL EA+R+
Sbjct: 303 DTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRV 362

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG---NYTMLSNIFAAT 527
           V+SMP+ PN ++ G LL  CR H  V+LAE+++  L+     DPG   NY +LSNI+AA 
Sbjct: 363 VESMPMRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLE---QDPGGDSNYVLLSNIYAAV 419

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           G W     VR  MK    +K  G S+VE+D EVHEF   D+ HP++ ++++++  L  ++
Sbjct: 420 GKWGGAGKVRSLMKSRGVKKRPGQSTVEIDGEVHEFVCGDRSHPQAREVFEVLGLLTHEM 479



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 133/284 (46%), Gaps = 41/284 (14%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           LA KLF SM +R +V++N+MI GL++ G ++ AR +FDEMP  D VSW  ++DG  K G 
Sbjct: 124 LAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGCVKNGR 183

Query: 230 MNLAFELFEKI------------------------------PHR---------NIVSWST 250
            + A + F  +                               HR         N+   ++
Sbjct: 184 HDEAIDCFHSMLRDGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANS 243

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y++ G ++ A+ +F R+  +T+V W  +I G+A  G   +A   ++ M   G KPD
Sbjct: 244 LIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADAVEHFEAMRREGFKPD 303

Query: 311 DGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
             T   +L AC+ +GL   G++ + ++  ++           +VD+  + G L  AM V 
Sbjct: 304 TVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAGRLGEAMRVV 363

Query: 370 NGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
             M  + + V   A+L G  MHG  + A  L   + ++  G D 
Sbjct: 364 ESMPMRPNEVVLGALLAGCRMHGDVDLAEQLMQHLLEQDPGGDS 407



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 6/177 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF+++  PD   +  LI  CV+N  + +A   F  M   GV  D  T    + AC  
Sbjct: 156 AREVFDEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRDGVEPDYVTLVAAISACAE 215

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   +H  +       ++ V NSLID Y++CG   V  A+++F  + +R +VSWN
Sbjct: 216 VGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCG--QVDFARQVFGRIRKRTVVSWN 273

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKI 240
           SMI G    G+ ++A   F+ M       D V++  +L   + AG  +     ++ +
Sbjct: 274 SMIVGFAANGQYADAVEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAM 330



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 118/270 (43%), Gaps = 18/270 (6%)

Query: 270 RMPAKTLVPWTIIISGYAEKG--MAKEAARLYDQMEEAGLKPDDGTLISILAACA--ESG 325
           R+P + +V WT  I+  A +G      AA        A   P+D TL+++L+ACA   S 
Sbjct: 25  RLPPRDVVSWTSAIARPAREGDLQGAAAALSAMLSSPAAPPPNDVTLLTVLSACAGDSSS 84

Query: 326 LLG--LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            L   L + +HA   K  F CN  +C  L   Y        A+ +F+ M  + +V++N M
Sbjct: 85  ALARPLALSLHALAVKL-FPCNLLLCTCLARFYLASRLPHLAIKLFDSMPDRSVVTYNTM 143

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + GL  +G    A  +F    DE   PDK ++  ++  C   G  D+ +  F+SM RD G
Sbjct: 144 ITGLMRNGLVAAAREVF----DEMPAPDKVSWTALIDGCVKNGRHDEAIDCFHSMLRD-G 198

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEAL---RLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           + P        I      G L   +   R V    +E N  +  +L+    +   V+ A 
Sbjct: 199 VEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLEHNVRVANSLIDMYARCGQVDFAR 258

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           +V     R++     ++  +   FAA G +
Sbjct: 259 QVFG---RIRKRTVVSWNSMIVGFAANGQY 285



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 14/181 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           ++   L+ +  +A  LI   A C Q+  A +VF  I+   V  +N++I     N   A A
Sbjct: 229 VVDKRLEHNVRVANSLIDMYARCGQVDFARQVFGRIRKRTVVSWNSMIVGFAANGQYADA 288

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFV 152
              F  M+ +G   D  T+  +L AC+       G  ++  ++  H +  +  ++G    
Sbjct: 289 VEHFEAMRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYG---- 344

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              ++D   + G +G ++     M M   ++V   +++AG    G++  A +L   + E+
Sbjct: 345 --CVVDLLGRAGRLGEAMRVVESMPMRPNEVV-LGALLAGCRMHGDVDLAEQLMQHLLEQ 401

Query: 213 D 213
           D
Sbjct: 402 D 402


>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Cucumis sativus]
          Length = 525

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/452 (36%), Positives = 265/452 (58%), Gaps = 42/452 (9%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL----------------- 221
           IV W S +A   + G+LSEA   F  M     E + +++ T+L                 
Sbjct: 57  IVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSL 116

Query: 222 ---------------------DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                                D Y+K  ++  A ++F  +  +N VSW+TM+ G+ ++G+
Sbjct: 117 HGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFMRNGE 176

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E+A  LFD MP +  + WT +I+G  + G +++A   + QM+ +G+  D  ++I++LAA
Sbjct: 177 IELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAA 236

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA+ G L LG+ VH  +    FK N  + N+L+DMY++CG ++ A  VF  M K+ LVSW
Sbjct: 237 CADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSW 296

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N+++ G A++G  +++L  F  M+ EGF PD  ++ G L AC+HAG ++KG++ F +M+ 
Sbjct: 297 NSIIVGFAVNGFADESLEFFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKS 356

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            + I P++EHYGC++DL GR+GRL++AL +++ MP++PN ++ G+LL ACR H  V LAE
Sbjct: 357 VHKITPRIEHYGCIVDLYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAE 416

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
            ++  L +L       Y +LSNI+AA G W+   NVR  MK    QK  G SSVE+D +V
Sbjct: 417 RLMKHLFKLDPEGDAYYVLLSNIYAAIGKWDGANNVRRTMKARGVQKKPGYSSVEIDGKV 476

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           HEF   D  H  ++ IY M++ L  +LK  G+
Sbjct: 477 HEFVAGDNYHADADNIYSMLDLLCHELKVCGY 508



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 121/417 (29%), Positives = 194/417 (46%), Gaps = 69/417 (16%)

Query: 42  KLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFR 101
           KL+  R P    + ISS           K   +  DP V   ++L R C    L ++A  
Sbjct: 31  KLNFPRSPNSPHRNISS-----------KFNPNSVDPIVLWTSSLARYCRNGQL-SEAAA 78

Query: 102 VFLDMQEKGVFTDNFTYPFLLKACNG--KNWFHLVQMIHALIYKCGY---FGDIFVPNSL 156
            F  M+  GV  ++ T+  LL AC       F     +H   Y C Y    G + V  +L
Sbjct: 79  EFTRMRLAGVEPNHITFITLLSACADFPSESFFFASSLHG--YACKYGLDTGHVMVGTAL 136

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS 216
           ID YSKC  +G   A+K+F ++G ++ VSWN+M+ G ++ GE+  A +LFDEMP RDA+S
Sbjct: 137 IDMYSKCAQLG--HARKVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAIS 194

Query: 217 WNTILDGYAKAGEMNLAFELFEKIP------------------------------HR--- 243
           W  +++G  K G    A E F ++                               HR   
Sbjct: 195 WTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIAVLAACADLGALTLGLWVHRFVM 254

Query: 244 ------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                 NI   ++++  YS+ G +E A+ +F +M  +TLV W  II G+A  G A E+  
Sbjct: 255 PQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLE 314

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH---ASINKYRFKCNTNVCNALVD 354
            +  M++ G KPD  +    L AC+ +GL+  G+++     S++K   +     C  +VD
Sbjct: 315 FFYAMQKEGFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGC--IVD 372

Query: 355 MYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ---GEKALGLFSRMKDEG 407
           +Y + G L++A+++   M  K + V   ++L     HG     E+ +    ++  EG
Sbjct: 373 LYGRAGRLEDALNMIEEMPMKPNEVVLGSLLAACRTHGDVNLAERLMKHLFKLDPEG 429



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 84/184 (45%), Gaps = 10/184 (5%)

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
           N  S FN  +   +V W + L     +GQ  +A   F+RM+  G  P+  TF+ +L AC 
Sbjct: 44  NISSKFNPNSVDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAGVEPNHITFITLLSAC- 102

Query: 424 HAGFIDKGVQYFYSMER---DYGI-LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            A F  +   +  S+      YG+    V     +ID+  +  +L  A ++  ++ V+ N
Sbjct: 103 -ADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVK-N 160

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           ++ W T+L    ++  +ELA ++ D    +   D  ++T L N     G   +      Q
Sbjct: 161 SVSWNTMLNGFMRNGEIELAIQLFD---EMPTRDAISWTALINGLLKHGYSEQALECFHQ 217

Query: 540 MKKT 543
           M+++
Sbjct: 218 MQRS 221



 Score = 42.0 bits (97), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 18/175 (10%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
           I+  LI   + C  +  A +VF  +    +  +N++I     N    ++   F  MQ++G
Sbjct: 264 ISNSLIDMYSRCGCIEFARQVFVKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKEG 323

Query: 111 VFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163
              D  +Y   L AC+       G   F  ++ +H +  +  ++G I      +D Y + 
Sbjct: 324 FKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCI------VDLYGRA 377

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDA 214
           G +  +L     M M   ++V   S++A     G+++ A RL   +    PE DA
Sbjct: 378 GRLEDALNMIEEMPMKPNEVV-LGSLLAACRTHGDVNLAERLMKHLFKLDPEGDA 431


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 198/634 (31%), Positives = 329/634 (51%), Gaps = 50/634 (7%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
            R P  F    LL   +    K   +   +++F Q+     QR+ Y    L+SS +    
Sbjct: 39  FRNPEIF----LLNNLVSAYAKFDRITYARRVFDQMP----QRNLYSWNTLLSSYSKLAC 90

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLK 123
           +    +VF+ +   D+  +N+LI A        Q+ + +  M   G F  N      +L 
Sbjct: 91  LPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLI 150

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             + +   HL   +H  + K G+   +FV + L+D YSK G+V    A++ F  M E+++
Sbjct: 151 LASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFC--ARQAFDEMPEKNV 208

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-- 241
           V +N++IAGL++   + ++R+LF +M E+D++SW  ++ G+ + G    A +LF ++   
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 242 -------------------------------------HRNIVSWSTMVWGYSKDGDMEMA 264
                                                  NI   S +V  Y K   ++ A
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSA 328

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +F +M  K +V WT ++ GY + G ++EA +++  M+  G++PDD TL S++++CA  
Sbjct: 329 ETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANL 388

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L  G + H             V NALV +Y KCGS++++  +F+ M+  D VSW A++
Sbjct: 389 ASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALV 448

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A  G+  + L LF  M   GF PDK TF+GVL AC+ AG + KG Q F SM +++ I
Sbjct: 449 SGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRI 508

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +P  +HY CMIDL  R+GRL+EA + +  MP  P+AI W +LL +CR H  +E+ +   +
Sbjct: 509 IPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAE 568

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L++L+  +  +Y +LS+I+AA G W +VAN+R  M+    +K  G S ++  N+VH FS
Sbjct: 569 SLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQVHIFS 628

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
             DQ +P S+QIY  +  L   +   G+   +++
Sbjct: 629 ADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNS 662


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 198/585 (33%), Positives = 316/585 (54%), Gaps = 21/585 (3%)

Query: 31  NQTKQLFAQIIKLDLQRDPY--IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N   Q+ A  +KL    + +  +   L+ S    R++ LA  +F +I D D   +NTLI 
Sbjct: 158 NAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLIT 217

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              ++ L  +A  +FL M++ G    +FT+  +LKA  G + F L Q +H L    G+  
Sbjct: 218 GYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSR 277

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D  V N ++  YSK   V  +  + LF  M E D VS+N +I+   +  +  E+  LF E
Sbjct: 278 DASVGNQILHFYSKHDRVLET--RNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFRE 335

Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS--------TMVWGYS 256
           M     +R    + T+L   A    + +      ++  + IV+ +        ++V  Y+
Sbjct: 336 MQCMGFDRRNFPFATMLSIAANLSSLQVG----RQVHCQAIVATADSILHVGNSLVDMYA 391

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K    + A+L+F  +  ++ V WT +ISGY +KG+     +L+ +M  A L+ D  T  +
Sbjct: 392 KCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFAT 451

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L A A    L LG ++HA I +     N    + LVDMYAKCGS+ +A+ VF  M  ++
Sbjct: 452 VLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRN 511

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            VSWNA++   A +G GE A+G F++M   G  PD  + +GVL AC+H GF+++G ++F 
Sbjct: 512 AVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQ 571

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           +M   YGI P+ +HY CM+DLLGR+GR  EA +L+  MP EP+ I+W ++L ACR +   
Sbjct: 572 AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQ 631

Query: 497 ELAEEVLDCLIRL-KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            LAE   + L  + K  D   Y  +SNI+AA G W  V +V+  M++   +K    S VE
Sbjct: 632 SLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVE 691

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           V++++H FS  DQ HP  ++I + IN L  +++  G+    S+ +
Sbjct: 692 VNHKIHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVV 736



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 139/555 (25%), Positives = 242/555 (43%), Gaps = 50/555 (9%)

Query: 18  EEKLQNLHKCKNLNQ----TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           E + + L   + L Q    T+++ A+IIK     D   +   +  L    Q+  A+KV++
Sbjct: 9   EVRSRTLATLRQLRQPPPATRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYD 68

Query: 74  DIQDPDVHLYNTLIRACVQ-------------------------------NSLNAQAFRV 102
           ++   +    NT+I   V+                               N+   +AF++
Sbjct: 69  EMPHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKL 128

Query: 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF--VPNSLIDSY 160
           F  M       D  T+  LL  CN     + V  +HA   K G+  ++F  V N L+ SY
Sbjct: 129 FRQMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSY 188

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
             C V  + LA  LF  + ++D V++N++I G  K G  +EA  LF +M +      +  
Sbjct: 189 --CEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFT 246

Query: 221 LDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
             G  KA      F L +++          R+    + ++  YSK   +   + LF+ MP
Sbjct: 247 FSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMP 306

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
               V + ++IS Y++    +E+  L+ +M+  G    +    ++L+  A    L +G +
Sbjct: 307 ELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQ 366

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           VH            +V N+LVDMYAKC   D A  +F  ++++  VSW A++ G    G 
Sbjct: 367 VHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGL 426

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
               L LF++M+      D+ TF  VL A      +  G Q    + R  G L  V    
Sbjct: 427 HGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRS-GNLENVFSGS 485

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
            ++D+  + G +K+A+++ + MP + NA+ W  L+ A   +   E A      +I+  G 
Sbjct: 486 GLVDMYAKCGSIKDAVQVFEEMP-DRNAVSWNALISAYADNGDGEAAIGAFTKMIQ-SGL 543

Query: 513 DPGNYTMLSNIFAAT 527
            P + ++L  + A +
Sbjct: 544 QPDSVSILGVLIACS 558



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 127/289 (43%), Gaps = 15/289 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   +Q+  Q I        ++   L+   A C     A  +F  +       +  LI 
Sbjct: 360 SLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALIS 419

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             VQ  L+    ++F  M+   +  D  T+  +LKA  G     L + +HA I + G   
Sbjct: 420 GYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLE 479

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++F  + L+D Y+KCG   +  A ++F  M +R+ VSWN++I+     G+   A   F +
Sbjct: 480 NVFSGSGLVDMYAKCG--SIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTK 537

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNIVS----WSTMVWGYSKDG 259
           M +     D+VS   +L   +  G +    E F+ + P   I      ++ M+    ++G
Sbjct: 538 MIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNG 597

Query: 260 DMEMAKLLFDRMPAKT-LVPWTIIISG---YAEKGMAKEAARLYDQMEE 304
               A+ L D MP +   + W+ +++    Y  + +A+ AA     ME+
Sbjct: 598 RFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEK 646


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 187/577 (32%), Positives = 308/577 (53%), Gaps = 18/577 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           + L   K +   I +   + D ++   LI+  A CR    A +VF  ++  ++  ++ +I
Sbjct: 275 ETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAII 334

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A   +    +A R F  MQ++G+  +  T+  LL      +    +  IH LI + G  
Sbjct: 335 TAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLD 394

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               + N+L++ Y +C       A+ +F  +   +++SWNSMI   V+     +A +LF 
Sbjct: 395 DTTTMRNALVNVYGRCE--SPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFR 452

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG-----YSKD 258
            M ++    D V++ TIL G    G      +L  +    + +  S +V       Y+K 
Sbjct: 453 TMQQQGIQPDRVNFMTIL-GACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKA 511

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G++++A+++   M  + +  W ++I+GYA  G ++EA   Y +++   +  D  T IS+L
Sbjct: 512 GELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVL 571

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            AC  S  L  G  +H++  +     +  V NAL +MY+KCGS++NA  +F+ M  +  V
Sbjct: 572 NACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAV 631

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWN ML   A HG+ E+ L L  +M+ EG   +  TFV VL +C+HAG I +G QYF+S+
Sbjct: 632 SWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSL 691

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             D GI  + EHYGC++DLLGR+G+L+EA + +  MP+EP  + W +LLGACR    ++ 
Sbjct: 692 GHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDR 751

Query: 499 AEEVLDCLIRLKGSDPGNYT---MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            +     L+ L   DPGN +   +LSNI++  GDW   A +R  M   R +K  G SS++
Sbjct: 752 GKLAAGKLLEL---DPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQ 808

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V N+VHEF V D  HP++ +IY  +  L   ++  G+
Sbjct: 809 VKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGY 845



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/472 (26%), Positives = 231/472 (48%), Gaps = 22/472 (4%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D ++   L+++   C  +  A KVF+ +    V  +N++I A   +  + +AF +F  MQ
Sbjct: 194 DVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQ 253

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           ++G   D  T+  +L AC         + +   I +  +  D+FV  +LI  Y++C    
Sbjct: 254 QEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCR--S 311

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG 223
              A ++F  M + ++++W+++I      G   EA R F  M +     + V++ ++L+G
Sbjct: 312 PEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNG 371

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTM------VWGYSKDGDMEMAKLLFDRMPAKTLV 277
           +     +     +   I    +   +TM      V+G  +  D   A+ +FD++    L+
Sbjct: 372 FTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPD--DARTVFDQLELPNLI 429

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK-VHAS 336
            W  +I  Y +     +A +L+  M++ G++PD    ++IL AC   G  G   K VH  
Sbjct: 430 SWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT-IGSHGRTRKLVHQC 488

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           + +     +  V  +LV+MYAK G LD A  +   M ++ + +WN ++ G A+HG+  +A
Sbjct: 489 VEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREA 548

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L  + +++ E    DK TF+ VL ACT +  + +G +  +S   + G+   V     + +
Sbjct: 549 LEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG-KMIHSNAVECGLDSDVIVKNALTN 607

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           +  + G ++ A R+  SMP+  +A+ W  +L A  +H     +EEVL  LIR
Sbjct: 608 MYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAYAQHGE---SEEVLK-LIR 654



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/521 (26%), Positives = 244/521 (46%), Gaps = 46/521 (8%)

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
           C  +G A+  F  I+  +V  +N +I A        +A  +F  M  +GV  +  T   +
Sbjct: 5   CGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAV 64

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L +C          ++HAL  + G+F +  V  +L++ Y KCG   +  A+ +F  M E+
Sbjct: 65  LNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGT--LLDAQSVFEEMAEK 122

Query: 182 DIVSWNSMIAGL-VKGGELSEARRLFDEM----PERDAVSW----NTILDGYAKAGEMNL 232
           ++V+WN+M+    ++G     A  LF  M     + + +++    N+++D  A      +
Sbjct: 123 NVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFI 182

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
              + E     ++   + +V  Y+K G +  A+ +FD MP +++  W  +IS Y+    +
Sbjct: 183 HSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERS 242

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
            EA  ++ +M++ G + D  T +SIL AC     L  G  V  SI++  F+ +  V  AL
Sbjct: 243 GEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTAL 302

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           + MYA+C S ++A  VF  M + +L++W+A++   A HG   +AL  F  M+ EG  P++
Sbjct: 303 ITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNR 362

Query: 413 YTFVGVLCACT-----------HAGFIDKGVQYFYSMER-------------------DY 442
            TF+ +L   T           H    + G+    +M                     D 
Sbjct: 363 VTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQ 422

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELA 499
             LP +  +  MI +  +  R  +AL+L ++M    ++P+ + + T+LGAC   +     
Sbjct: 423 LELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTR 482

Query: 500 EEVLDCLIRLK-GSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           + V  C+     G  P   T L N++A  G+ + VA V LQ
Sbjct: 483 KLVHQCVEESGLGGSPLVQTSLVNMYAKAGELD-VAEVILQ 522



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 219/459 (47%), Gaps = 19/459 (4%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA-CVQNSLNAQAFRVFLD 105
           ++  +A  L++    C  +  A  VF ++ + +V  +N ++    +Q      A  +F  
Sbjct: 91  QNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTR 150

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M  +GV  +  T+  +L +    +     + IH+ + +  +  D+FV  +L+++Y+KCG 
Sbjct: 151 MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCG- 209

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
             ++ A+K+F  M  R + +WNSMI+         EA  +F  M +     D V++ +IL
Sbjct: 210 -SLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSIL 268

Query: 222 DGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           D       +     + E I       ++   + ++  Y++    E A  +F RM    L+
Sbjct: 269 DACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLI 328

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA-CAESGLLGLGMKVHAS 336
            W+ II+ +A+ G   EA R +  M++ G+ P+  T IS+L      SGL  L  ++H  
Sbjct: 329 TWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELS-RIHLL 387

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I ++     T + NALV++Y +C S D+A +VF+ +   +L+SWN+M+       + + A
Sbjct: 388 ITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDA 447

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACT--HAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           L LF  M+ +G  PD+  F+ +L ACT    G   K V      E   G  P V+    +
Sbjct: 448 LQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVE-ESGLGGSPLVQ--TSL 504

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           +++  ++G L  A  ++Q M  E     W  L+     H
Sbjct: 505 VNMYAKAGELDVAEVILQEMD-EQQITAWNVLINGYALH 542



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 162/343 (47%), Gaps = 13/343 (3%)

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAV 215
           YS+CG +G ++A   F  +  R++VSWN MI+         EA  LF  M       +A+
Sbjct: 2   YSRCGSLGDAVAA--FGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAI 59

Query: 216 SWNTILDGYAKAGEMN---LAFEL-FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           +   +L+      E+    L   L  E+   +N +  + ++  Y K G +  A+ +F+ M
Sbjct: 60  TLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 272 PAKTLVPWTIIISGYAEKGMA-KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
             K +V W  ++  Y+ +G   K A  L+ +M   G+K +  T +++L +  +   L  G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             +H+ + +     +  V  ALV+ Y KCGSL +A  VF+GM  + + +WN+M+   ++ 
Sbjct: 180 KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSIS 239

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
            +  +A  +F RM+ EG   D+ TF+ +L AC +   +  G     S+      L     
Sbjct: 240 ERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVG 299

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
              +I +  R    ++A ++   M  + N I W  ++ A   H
Sbjct: 300 TA-LITMYARCRSPEDAAQVFGRMK-QTNLITWSAIITAFADH 340



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 2/134 (1%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY++CGSL +A++ F  +  +++VSWN M+   + +   ++AL LF  M  EG  P+  T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
            V VL +C     +  G+   +++  + G          ++++ G+ G L +A  + + M
Sbjct: 61  LVAVLNSCGSFRELRDGI-LVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 475 PVEPNAIIWGTLLG 488
             E N + W  +LG
Sbjct: 120 A-EKNVVTWNAMLG 132


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 186/583 (31%), Positives = 312/583 (53%), Gaps = 17/583 (2%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   + + A    + L  D +++  LI     C + G A  VF  +   DV  +N ++ 
Sbjct: 114 DLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNAMLA 173

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               + +   A    LDMQ++G    N  T   LL              +HA   +  Y 
Sbjct: 174 GYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLR-AYL 232

Query: 148 GD----IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                 + +  +L+D Y+KC    +  A ++F  M  R+ V+W+++I G V    ++EA 
Sbjct: 233 DQNEEQVLIGTALLDMYAKCK--HLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAF 290

Query: 204 RLFDEMPER-----DAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWG 254
            LF +M         A S  + L   A   ++ +  +L   +     H ++ + ++++  
Sbjct: 291 NLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSM 350

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y+K G +  A +LFD +  K  + +  ++SGY + G A+EA  ++ +M+   ++PD  T+
Sbjct: 351 YAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATM 410

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S++ AC+    L  G   H S+        T++CN+L+DMYAKCG +D +  VF+ M  
Sbjct: 411 VSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPA 470

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +D+VSWN M+ G  +HG G++A  LF  MK++GF PD  TF+ ++ AC+H+G + +G  +
Sbjct: 471 RDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHW 530

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F +M   YGILP++EHY CM+DLL R G L EA + +QSMP++ +  +WG LLGACR H 
Sbjct: 531 FDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHK 590

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            ++L ++V   + +L     GN+ +LSNIF+A G +++ A VR+  K    +K  G S +
Sbjct: 591 NIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWI 650

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           E++  +H F   DQ HP S  IY  ++ +  D+K +G+ A  S
Sbjct: 651 EINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTS 693



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 8/246 (3%)

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W   +  +   G + +A+ +FDR+PA     +  +I  Y+ +G    A  LY  M    +
Sbjct: 36  WQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRV 95

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            P+  T   +L AC+    L  G  +HA         +  V  AL+D+Y +C     A +
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAG 426
           VF  M  +D+V+WNAML G A HG    A+     M+D  G  P+  T V +L      G
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHG 215

Query: 427 FIDKGVQYFYSMERDYGILPQVEHY----GCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
            + +G        R Y  L Q E        ++D+  +   L  A R+   M V  N + 
Sbjct: 216 ALFQGTSVHAYCLRAY--LDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVR-NEVT 272

Query: 483 WGTLLG 488
           W  L+G
Sbjct: 273 WSALIG 278


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 195/609 (32%), Positives = 322/609 (52%), Gaps = 72/609 (11%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A   ++  A +VF ++ +PD   +  +I    Q      A  +F +M    V   
Sbjct: 85  ILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPT 144

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG--VVG----- 167
            FT   +L +C       + + +H+ + K G    I V NSL++ Y+K G  V       
Sbjct: 145 QFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFD 204

Query: 168 ----------------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                                 V LA+  F  M ERD+VSWN+MI+G  + G   EA  +
Sbjct: 205 RMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDI 264

Query: 206 FDEM-------PERDAVS---------------------------------WNTILDGYA 225
           F +M       P++  ++                                  N ++  Y+
Sbjct: 265 FSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYS 324

Query: 226 KAGEMNLAFELFEK--IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           K+G + +A ++ E+  I + ++++++ ++ GY K GD+  A+ +FD +  + +V WT +I
Sbjct: 325 KSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMI 384

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
            GY + G  ++A  L+  M + G KP++ TL ++L+  +    L  G ++HAS  +    
Sbjct: 385 VGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNA 444

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
            + +V NAL+ MYAK GS+++A  VFN +  K+D ++W +M+  LA HG GE+AL LF R
Sbjct: 445 SSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFER 504

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M + G  PD  T+VGVL ACTH G +++G  Y+  M+  + I+P   HY CMIDL GR+G
Sbjct: 505 MLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAG 564

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
            L+EA   +++MP+EP+ I WG+LL +C+ H  VELAE   + L+ ++  + G Y+ L+N
Sbjct: 565 LLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALAN 624

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
           +++A G W   AN+R  MK    +K  G S V++ N+VH F V D LHP+ + IY+M+  
Sbjct: 625 VYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAK 684

Query: 583 LGKDLKPVG 591
           + K++K +G
Sbjct: 685 IWKEIKKMG 693



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 119/431 (27%), Positives = 184/431 (42%), Gaps = 108/431 (25%)

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
           +D +T  FL ++   K+ F   + IHA I K G    +F+ N+L++ Y+K G +      
Sbjct: 13  SDPYT-SFLQRSLKFKDPF-TGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFI------ 64

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
                                       +A R+FDEMP +   SWN IL GYAK G +  
Sbjct: 65  ---------------------------YDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEE 97

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A  +FE++P  + VSW+ M+ GY++ G  E A  +F  M +   VP              
Sbjct: 98  AHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDD-VP-------------- 142

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
                           P   TL ++LA+CA    LG+G KVH+ + K+      +V N+L
Sbjct: 143 ----------------PTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSL 186

Query: 353 VDMYAKCGS-------------------------------LDNAMSVFNGMTKKDLVSWN 381
           ++MYAK G                                +D A   F  M ++D+VSWN
Sbjct: 187 LNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWN 246

Query: 382 AMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           AM+ G   HG   +AL +FS+M  D    PDK+T    L AC +   +  G Q    + R
Sbjct: 247 AMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIR 306

Query: 441 DYGILPQVEHYG----CMIDLLGRSGRLKEALRLV-QSMPVEPNAIIWGTLLGACRKHNA 495
                 + + +G     +I +  +SG ++ A +++ QSM    + I +  LL    K   
Sbjct: 307 -----TEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGD 361

Query: 496 VELAEEVLDCL 506
           +  A  + D L
Sbjct: 362 INPARRIFDSL 372


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 184/531 (34%), Positives = 292/531 (54%), Gaps = 44/531 (8%)

Query: 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
           +  M  +G   D +T+P LLKA    +    V+ +HA + K G   +  V  SL+   + 
Sbjct: 31  YARMLARGAMPDAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLV---TA 87

Query: 163 CGVVGVSLAKKLFMSMGERDI-VSWNSMIAGLVKGGELSEARRLFDEMPERDA----VSW 217
               G   A +  +S  ERD  V WN++I+G  +     EA   F +M    A    V++
Sbjct: 88  YAAGGDGAAARALLSERERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTY 147

Query: 218 ------------------------------------NTILDGYAKAGEMNLAFELFEKIP 241
                                               N ++D YA+  +M  A++LF+ + 
Sbjct: 148 VSVLSACGKGTGDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQ 207

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            R++VSW++++ G ++ G ++ A+ LF RMP +  V WT +I GY +    +EA  ++ +
Sbjct: 208 VRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFRE 267

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M+ + +  D+ T++S++ ACA+ G L +G  V   +++   K +  V NAL+DMY+KCGS
Sbjct: 268 MQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGS 327

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           ++ A+ VF  M  +D  +W A++ GLA++G GE+A+ +F RM      PD+ TF+GVL A
Sbjct: 328 IERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTA 387

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           CTHAG +DKG ++F SM   Y I P V HYGC+IDL GR+G++ EAL  +  MP+ PN+ 
Sbjct: 388 CTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNST 447

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           IWGTLL ACR H   E+ E V + L+++   +   YT+LSNI+A    W  V  +R  + 
Sbjct: 448 IWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIM 507

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +   +K  G S +E++  +HEF   DQ HP S++IY  + ++  DL  VG+
Sbjct: 508 EKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGY 558



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 182/416 (43%), Gaps = 44/416 (10%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ + +  +    + + A ++K  + R+ ++A  L+++ A       A  + ++ +    
Sbjct: 50  LKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTP 109

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHA 139
            ++N LI    +     +A   F+DM   G      TY  +L AC  G     L   +H 
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHG 169

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            +   G   D+ V N+L+D Y++C    +  A KLF  M  R +VSW S+++GL + G +
Sbjct: 170 RVVGSGVLPDLRVENALVDMYAECA--DMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRV 227

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS------------ 247
            EAR LF  MPERD VSW  ++DGY +A     A E+F ++   N+ +            
Sbjct: 228 DEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITAC 287

Query: 248 ----------W-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                     W                 + ++  YSK G +E A  +F  M  +    WT
Sbjct: 288 AQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWT 347

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK- 339
            II G A  G  +EA  ++ +M      PD+ T I +L AC  +GL+  G +   S+ + 
Sbjct: 348 AIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRET 407

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
           Y    N      ++D++ + G +  A+   + M    +   W  +L    +HG  E
Sbjct: 408 YNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSE 463



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 129/303 (42%), Gaps = 48/303 (15%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L+S L    ++  A  +F  + + D   +  +I   VQ +   +A  +F +MQ   V  D
Sbjct: 217 LLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSAD 276

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            FT   ++ AC       + + +   + + G   D FV N+LID YSKCG   +  A  +
Sbjct: 277 EFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCG--SIERALDV 334

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PER---------------- 212
           F  M  RD  +W ++I GL   G   EA  +F  M      P+                 
Sbjct: 335 FKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLV 394

Query: 213 ------------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVW 253
                             + V +  I+D + +AG++  A +  +++P   N   W T++ 
Sbjct: 395 DKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLA 454

Query: 254 GYSKDGDMEMAKLLFDRM----PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
                G+ E+ +L+ +R+    P  + V +T++ + YA+    ++  RL   + E G+K 
Sbjct: 455 ACRVHGNSEIGELVTERLLQMDPENSTV-YTLLSNIYAKCNRWEDVRRLRHTIMEKGIKK 513

Query: 310 DDG 312
           + G
Sbjct: 514 EPG 516



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 122/307 (39%), Gaps = 25/307 (8%)

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ L + +P + LV               ++A   Y +M   G  PD  T   +L A A 
Sbjct: 8   ARRLLEGIPRRCLV------------AAREDAVAGYARMLARGAMPDAYTFPPLLKAVAR 55

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
                    VHA + K+    N +V  +LV  YA  G    A ++ +   +   V WNA+
Sbjct: 56  GSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVVWNAL 115

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKGVQYFYSMERDY 442
           + G     +  +A   F  M   G  P   T+V VL AC    G +  G+Q  +      
Sbjct: 116 ISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQ-VHGRVVGS 174

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G+LP +     ++D+      ++ A +L   M V  + + W +LL    +   V   +E 
Sbjct: 175 GVLPDLRVENALVDMYAECADMESAWKLFDGMQVR-SVVSWTSLLSGLTRLGRV---DEA 230

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            D   R+   D  ++T + + +       + A  R  ++  R  + S  S+ E    V  
Sbjct: 231 RDLFGRMPERDTVSWTAMIDGYV------QAARFREALEMFREMQCSNVSADEF-TMVSV 283

Query: 563 FSVCDQL 569
            + C QL
Sbjct: 284 ITACAQL 290


>gi|242094598|ref|XP_002437789.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
 gi|241916012|gb|EER89156.1| hypothetical protein SORBIDRAFT_10g002620 [Sorghum bicolor]
          Length = 623

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 190/595 (31%), Positives = 320/595 (53%), Gaps = 40/595 (6%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           + L+   DP    +LI+ LA   ++  A K+F+   D DV  +  L+ A  +  +   A 
Sbjct: 37  VGLEQSHDP---NRLIAELAAAGRVWDARKLFDGTPDWDVVSWTALVSAYARRGMLRDAR 93

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
            +F          +  T+  LL   +G     LV    AL  +     ++   N+++++Y
Sbjct: 94  ELF---DRPDARRNVVTWTALL---SGYARARLVDEAEALFQRMPQR-NVVSWNTMLEAY 146

Query: 161 SKCGVVG-----------------------------VSLAKKLFMSMGERDIVSWNSMIA 191
           +  G VG                             V  A++LF  M ERD+++W +M+ 
Sbjct: 147 AAAGRVGDACALFDRMPVRDAGSWNILLATLVRSGSVDKARELFGRMPERDVMAWTTMVD 206

Query: 192 GLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
           G+ + G++ EAR LFD MPER+ VSWN ++ GY +   ++ A +LF K+P R+I S + M
Sbjct: 207 GVARSGKVDEARVLFDSMPERNVVSWNAMISGYTRNHRIDEALDLFMKMPERDIASCNIM 266

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V G+ ++ D++ A+ LFD MP + +V WT +++GY +   ++ A  L+  M  AG +P+ 
Sbjct: 267 VTGFIQNKDLKRARELFDEMPERNVVTWTTMMNGYLKGKQSELALGLFSGMLMAGTRPNQ 326

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T +  L AC++   L  G +VH  I K  F+ +  V +AL+++YAKCG +  A  +F+ 
Sbjct: 327 VTFLGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDL 386

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
             +KDL+SWN ++   A HG G +A+ L+ +M++ G+ P+  T+V +L AC+H+G +D+G
Sbjct: 387 SREKDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEG 446

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP-NAIIWGTLLGAC 490
           ++ F SM  D  I  + EHY C+IDL  R+GRL +A RL+  + ++P +  +W  LLG C
Sbjct: 447 LKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDAKRLIHYLKIKPASGSVWSALLGGC 506

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
             H    +       L++ +  + G YT+LSNI+A+ G W + A +R +M     +K  G
Sbjct: 507 NAHGNESIGNLAARNLLQAEPDNAGTYTLLSNIYASAGKWKEAAEIRSEMNNRGLKKQPG 566

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEGVI 605
            S +EV N+VH F   D+ H +S+ IY ++  +   ++ VG        + E V+
Sbjct: 567 CSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHHMMRIVGTVPSDLVHVDEDVV 621



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 25/241 (10%)

Query: 21  LQNLHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L  L  C +L    + KQ+   I K   Q D ++   L++  A C ++GLA K+F+  ++
Sbjct: 330 LGALDACSDLAALCEGKQVHQMICKTTFQFDAFVESALMNVYAKCGEIGLARKLFDLSRE 389

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNW 130
            D+  +N +I A   + +  +A  ++  MQE G   ++ TY  LL AC+       G   
Sbjct: 390 KDLISWNGIIAAYAHHGVGIEAILLYEKMQENGYRPNDVTYVVLLSACSHSGLVDEGLKI 449

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL--FMSMGERDIVSWNS 188
           F  +    ++  +  ++        LID  S+ G   +  AK+L  ++ +       W++
Sbjct: 450 FESMVNDRSIAVRDEHY------TCLIDLCSRAG--RLDDAKRLIHYLKIKPASGSVWSA 501

Query: 189 MIAGLVKGGELS----EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           ++ G    G  S     AR L    P+ +A ++  + + YA AG+   A E+  ++ +R 
Sbjct: 502 LLGGCNAHGNESIGNLAARNLLQAEPD-NAGTYTLLSNIYASAGKWKEAAEIRSEMNNRG 560

Query: 245 I 245
           +
Sbjct: 561 L 561


>gi|413935435|gb|AFW69986.1| hypothetical protein ZEAMMB73_442164 [Zea mays]
          Length = 658

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 162/430 (37%), Positives = 254/430 (59%), Gaps = 6/430 (1%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N++I  Y++ G++ V  A++LF  M  +D VSW +++ G ++ G++  A  +F +MP+RD
Sbjct: 227 NAMITGYTRAGMMQV--ARRLFDEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRD 284

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
            ++WNT++ G+  +  ++ A  LF  +P R++VSW+T++ GY + GDM+ A   F  M  
Sbjct: 285 VLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSMLE 344

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           K    W  +ISGY ++G    A  L  +M   G +PD  T   +++ CA    LG G  V
Sbjct: 345 KDETSWNTVISGYKDEG----ALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMV 400

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H    K  F+ +  V ++L+ MY+KCG +  A  VF+ + ++D V+WNAM+   A HG  
Sbjct: 401 HICTIKTGFEHDALVMSSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLA 460

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
            +AL LF RM  + F PD  TF+ VL AC H G++ +G  YF SM++D+ ++P+ +HY C
Sbjct: 461 AEALALFDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSC 520

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+DLLGRSG + +A    + +P       W TL  +C  H  ++L E V   +++ + SD
Sbjct: 521 MVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPSD 580

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
            G YT+LSNI+AA G W+  A VR  MK+   +K +G S +E+  +V  FS  D  HP  
Sbjct: 581 GGMYTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETGCSWIELKGDVVSFSSNDNAHPLI 640

Query: 574 EQIYQMINTL 583
           EQI Q ++ L
Sbjct: 641 EQICQEVDNL 650



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 116/341 (34%), Positives = 178/341 (52%), Gaps = 52/341 (15%)

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+   NS I ++ + G VG   A+++F  M ER++ +WN M++GL + G L++AR +FD
Sbjct: 34  GDVGRWNSDIMAHFRAGRVGA--ARRVFDEMRERNVFTWNCMVSGLARNGLLADARGVFD 91

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP R++VSW  +L GYA+ G +  A +LF+++PHRN+VSW+ MV GY ++G ++ A+ L
Sbjct: 92  AMPSRNSVSWAALLTGYARRGRVAEARDLFDRMPHRNVVSWNAMVSGYLRNGMVDRAREL 151

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MPA+  V W +++SGY  +   +EA  ++D+   A   P                  
Sbjct: 152 FDAMPARDDVSWLMMVSGYMRRKRFREAREIFDR---APSPPP----------------- 191

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
                             T+VCNAL+  YA  G L +A  +F  M + D VSWNAM+ G 
Sbjct: 192 ------------------TSVCNALLSGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGY 233

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILP 446
              G  + A  LF    DE  G D  ++  ++      G +D   + F  M +RD     
Sbjct: 234 TRAGMMQVARRLF----DEMPGKDTVSWTAIVRGYLQNGDVDAAWEVFQDMPDRD----- 284

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
            V  +  M+     S RL +ALRL   MP + + + W T+L
Sbjct: 285 -VLAWNTMMGGFVVSDRLDDALRLFADMP-DRDLVSWNTIL 323



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 213/490 (43%), Gaps = 79/490 (16%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           DV  +N+ I A  +      A RVF +M+E+ VFT N     L +  NG           
Sbjct: 35  DVGRWNSDIMAHFRAGRVGAARRVFDEMRERNVFTWNCMVSGLAR--NG----------- 81

Query: 139 ALIYKCGYFGDIFVPNS-----LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            L    G F  +   NS     L+  Y++ G   V+ A+ LF  M  R++VSWN+M++G 
Sbjct: 82  LLADARGVFDAMPSRNSVSWAALLTGYARRG--RVAEARDLFDRMPHRNVVSWNAMVSGY 139

Query: 194 VKGGELSEARRLFDEMPERDAVSW--------------------------------NTIL 221
           ++ G +  AR LFD MP RD VSW                                N +L
Sbjct: 140 LRNGMVDRARELFDAMPARDDVSWLMMVSGYMRRKRFREAREIFDRAPSPPPTSVCNALL 199

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
            GYA  G +  A ELF ++   + VSW+ M+ GY++ G M++A+ LFD MP K  V WT 
Sbjct: 200 SGYAGYGYLKDAEELFGRMQRPDRVSWNAMITGYTRAGMMQVARRLFDEMPGKDTVSWTA 259

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI--SILAACAESGLLGLGMKVHASINK 339
           I+ GY + G    A  ++  M      PD   L   +++     S  L   +++ A +  
Sbjct: 260 IVRGYLQNGDVDAAWEVFQDM------PDRDVLAWNTMMGGFVVSDRLDDALRLFADMPD 313

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                     N ++  Y + G +D+A + F  M +KD  SWN ++ G     + E AL L
Sbjct: 314 RDLVS----WNTILQGYIQQGDMDSATTWFRSMLEKDETSWNTVISGY----KDEGALSL 365

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH----YGCMI 455
            S M   G+ PD+ T+  V+  C     +  G      M     I    EH       +I
Sbjct: 366 LSEMTRGGYRPDQATWSVVISVCASLAALGCG-----RMVHICTIKTGFEHDALVMSSLI 420

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
            +  + G + EA + V  + V+ + + W  ++     H     A  + D + + + S P 
Sbjct: 421 SMYSKCGLITEASQ-VFDLIVQRDTVTWNAMIATYAYHGLAAEALALFDRMTKDRFS-PD 478

Query: 516 NYTMLSNIFA 525
           + T LS + A
Sbjct: 479 HATFLSVLSA 488



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 138/335 (41%), Gaps = 57/335 (17%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF D+ D DV  +NT++   V +     A R+F DM ++                  
Sbjct: 273 AWEVFQDMPDRDVLAWNTMMGGFVVSDRLDDALRLFADMPDR------------------ 314

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                                D+   N+++  Y + G   +  A   F SM E+D  SWN
Sbjct: 315 ---------------------DLVSWNTILQGYIQQG--DMDSATTWFRSMLEKDETSWN 351

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAK-----AGEMNLAFELFE 238
           ++I+G    G LS    L  EM       D  +W+ ++   A       G M     +  
Sbjct: 352 TVISGYKDEGALS----LLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHICTIKT 407

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
              H  +V  S+++  YSK G +  A  +FD +  +  V W  +I+ YA  G+A EA  L
Sbjct: 408 GFEHDALVM-SSLISMYSKCGLITEASQVFDLIVQRDTVTWNAMIATYAYHGLAAEALAL 466

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYA 357
           +D+M +    PD  T +S+L+ACA  G L  G     S+ + +     ++  + +VD+  
Sbjct: 467 FDRMTKDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYSCMVDLLG 526

Query: 358 KCGSLDNAMSVFNGMTKK-DLVSWNAMLYGLAMHG 391
           + G +  A +    +     + +W  +      HG
Sbjct: 527 RSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHG 561



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 77/339 (22%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           RD      ++    +  ++  A+++F D+ D D+  +NT+++  +Q      A   F  M
Sbjct: 283 RDVLAWNTMMGGFVVSDRLDDALRLFADMPDRDLVSWNTILQGYIQQGDMDSATTWFRSM 342

Query: 107 QEK---------------------------GVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            EK                           G   D  T+  ++  C         +M+H 
Sbjct: 343 LEKDETSWNTVISGYKDEGALSLLSEMTRGGYRPDQATWSVVISVCASLAALGCGRMVHI 402

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
              K G+  D  V +SLI  YSKCG+  ++ A ++F  + +RD V+WN+MIA     G  
Sbjct: 403 CTIKTGFEHDALVMSSLISMYSKCGL--ITEASQVFDLIVQRDTVTWNAMIATYAYHGLA 460

Query: 200 SEARRLFDEMPERDAVS--------------------------------WNTI------- 220
           +EA  LFD M  +D  S                                WN +       
Sbjct: 461 AEALALFDRMT-KDRFSPDHATFLSVLSACAHKGYLYEGCHYFRSMQQDWNLVPRSDHYS 519

Query: 221 --LDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEM----AKLLFDRMPA 273
             +D   ++G ++ A+    KIP    I +W T+    +  GD+++    AK +    P+
Sbjct: 520 CMVDLLGRSGFVHQAYNFTRKIPSNLQINAWETLFSSCNAHGDIQLGELVAKNVLQSRPS 579

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
              + +T++ + YA KGM   AA +   M+E GLK + G
Sbjct: 580 DGGM-YTLLSNIYAAKGMWSSAATVRGLMKEQGLKKETG 617


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 186/537 (34%), Positives = 299/537 (55%), Gaps = 67/537 (12%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L+  L L   +  A K+F+  Q+    LYN LI+A   +    ++  ++  +   G+   
Sbjct: 15  LLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIVLYNLLSFDGLRPS 74

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           + T+ F+  A    +    ++++H+  ++ G+  D F   +LI +Y+             
Sbjct: 75  HHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCTTLITAYA------------- 121

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
                               K G L  ARR+FDEM +RD   WN ++ GY + G+M  A 
Sbjct: 122 --------------------KLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAM 161

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           ELF+ +P +N+ SW+T++ G+S++G+                                 E
Sbjct: 162 ELFDSMPRKNVTSWTTVISGFSQNGNY-------------------------------SE 190

Query: 295 AARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           A +++  ME +  +KP+  T++S+L ACA  G L +G ++     +  F  N  VCNA +
Sbjct: 191 ALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATI 250

Query: 354 DMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +MY+KCG +D A  +F  +  +++L SWN+M+  LA HG+ ++AL LF++M  EG  PD 
Sbjct: 251 EMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDA 310

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TFVG+L AC H G + KG + F SME  + I P++EHYGCMIDLLGR G+L+EA  L++
Sbjct: 311 VTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIK 370

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           +MP++P+A++WGTLLGAC  H  VE+AE   + L +L+ ++PGN  ++SNI+AA   W+ 
Sbjct: 371 TMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDG 430

Query: 533 VANVRLQMKKTRAQKPSGASS-VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           V  +R  MKK    K +G S  VEV  +VH+F+V D+ HP+S +IYQ++  + + +K
Sbjct: 431 VLRMRKLMKKETMTKAAGYSYFVEVGVDVHKFTVEDKSHPRSYEIYQVLEEIFRRMK 487



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 127/257 (49%), Gaps = 14/257 (5%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RD  +   +I+       M  A+++F+ +   +V  + T+I    QN   ++A ++FL 
Sbjct: 138 KRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLC 197

Query: 106 MQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           M+ +K V  ++ T   +L AC       + + +     + G+F +I+V N+ I+ YSKCG
Sbjct: 198 MEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCG 257

Query: 165 VVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNT 219
           ++ V  AK+LF  +G +R++ SWNSMI  L   G+  EA  LF +M     + DAV++  
Sbjct: 258 MIDV--AKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVG 315

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           +L      G +    ELF+ +   + +S     +  M+    + G ++ A  L   MP K
Sbjct: 316 LLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK 375

Query: 275 T-LVPWTIIISGYAEKG 290
              V W  ++   +  G
Sbjct: 376 PDAVVWGTLLGACSFHG 392


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 188/565 (33%), Positives = 314/565 (55%), Gaps = 13/565 (2%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           IK       Y A  +IS  A C ++ +A K+F +    D   +NT+I   V       A 
Sbjct: 26  IKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETAL 85

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
                M+  G   D +++  +LK      +  + Q +H+++ K GY G++F  ++L+D Y
Sbjct: 86  EFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMY 145

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVS 216
           +KC    V  A ++F S+  R+ V+WN++I+G  + G+   A  L D M     E D  +
Sbjct: 146 AKCE--RVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGT 203

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MVWGYSKDGDMEMAKLLFD-RM 271
           +  +L          L  ++  KI    + S +T    ++  YS+ G +E A+ +FD  +
Sbjct: 204 FAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAI 263

Query: 272 PAKTL--VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
             + L  V W  I++G+++ G++++A + ++ M    +  D     ++L +C++   L L
Sbjct: 264 ETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQL 323

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G +VH  + K  F+ N  V ++L+ MY+KCG +++A   F+   K   ++WN++++G A 
Sbjct: 324 GQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQ 383

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG+G+ AL LF  MKD     D  TFV VL AC+H G +++G  +  SME DYGI P++E
Sbjct: 384 HGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRME 443

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY CMIDLLGR+GRL EA  L+++MP EP+A++W TLLGACR    +ELA +V   L+ L
Sbjct: 444 HYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLEL 503

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  +   Y +LS++F     WN+ A+++  MK+   +K  G S +EV NEV  F+  D+ 
Sbjct: 504 EPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRS 563

Query: 570 HPKSEQIYQMINTLGKDLKPVGHAA 594
           HP  E+IY  +  L ++++ + + A
Sbjct: 564 HPNCEEIYLRLGELMEEIRRLDYVA 588



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 186/384 (48%), Gaps = 18/384 (4%)

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H L  K G    I+  N++I  Y+KCG   + +A K+F    +RD VSWN+MIAG V  G
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCG--EIRIASKMFGETSQRDAVSWNTMIAGFVNLG 79

Query: 198 ELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWS 249
               A      M       D  S+ +IL G A  G + +  ++   +       N+ + S
Sbjct: 80  NFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGS 139

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            ++  Y+K   +E A  +F  +  +  V W  +ISGYA+ G    A  L D ME  G++ 
Sbjct: 140 ALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI 199

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           DDGT   +L    +  L  L  +VHA I K+    +T VCNA++  Y++CGS+++A  VF
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 370 NGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           +G  +    D VSWN++L G +  G  E AL  F  M+ +    D Y F  VL +C+   
Sbjct: 260 DGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLA 319

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +  G Q  + +    G  P       +I +  + G +++A +   + P + ++I W +L
Sbjct: 320 TLQLG-QQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSL 377

Query: 487 LGACRKHNAVELAEEVLDCLIRLK 510
           +    +H   ++A   LD    +K
Sbjct: 378 IFGYAQHGRGKIA---LDLFFLMK 398



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 172/364 (47%), Gaps = 15/364 (4%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+ + ++K+  + + +    L+   A C ++  A +VF  I   +   +N LI    Q 
Sbjct: 120 QQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQV 179

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                AF +   M+ +GV  D+ T+  LL   +  +   L   +HA I K G   D  V 
Sbjct: 180 GDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVC 239

Query: 154 NSLIDSYSKCGVVGVSLAKKLF---MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           N++I +YS+CG   +  A+++F   +   + D VSWNS++ G  + G   +A + F+ M 
Sbjct: 240 NAIITAYSECG--SIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMR 297

Query: 211 ER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDME 262
            +    D  +++ +L   +    + L  ++   +       N    S++++ YSK G +E
Sbjct: 298 SQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIE 357

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+  FD  P  + + W  +I GYA+ G  K A  L+  M++  +K D  T +++L AC+
Sbjct: 358 DARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACS 417

Query: 323 ESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSW 380
             GL+  G     S+ + Y           ++D+  + G LD A ++   M  + D + W
Sbjct: 418 HIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVW 477

Query: 381 NAML 384
             +L
Sbjct: 478 KTLL 481



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 150/302 (49%), Gaps = 19/302 (6%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN---DIQDPDVHLYNTLIRA 89
           T Q+ A+I+K  L  D  +   +I++ + C  +  A +VF+   + +D D   +N+++  
Sbjct: 220 TTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTG 279

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+ L+  A + F +M+ + V  D++ +  +L++C+      L Q +H L+ K G+  +
Sbjct: 280 FSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPN 339

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            FV +SLI  YSKCGV  +  A+K F +  +   ++WNS+I G  + G    A  LF  M
Sbjct: 340 GFVASSLIFMYSKCGV--IEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLM 397

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFELFEK------IPHRNIVSWSTMVWGYSKDG 259
            +R    D +++  +L   +  G +   +   +       IP R +  ++ M+    + G
Sbjct: 398 KDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPR-MEHYACMIDLLGRAG 456

Query: 260 DMEMAKLLFDRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
            ++ AK L + MP +   + W  ++      G  + A+++   + E  L+P++     +L
Sbjct: 457 RLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLE--LEPEEHCTYVLL 514

Query: 319 AA 320
           ++
Sbjct: 515 SS 516


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  331 bits (848), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 193/581 (33%), Positives = 307/581 (52%), Gaps = 42/581 (7%)

Query: 16  LLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
            +  +L NL+ K   ++  ++LF ++     QRD +    ++S  A    +     +F++
Sbjct: 59  FIHNRLLNLYAKSGEISHARKLFDEMT----QRDNFSWNAMLSLYAKSGLVEDLRVIFDN 114

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           +   D   YNT+I     N     A  VFL MQ++G+    +T+  +L AC         
Sbjct: 115 MPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLLDLRRG 174

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + IH  I  C   G++FV N+L D Y++CG                              
Sbjct: 175 KQIHGRIIICNLGGNVFVCNALTDLYARCG------------------------------ 204

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWST 250
              E+ +ARRLFD M  R+ V+WN ++ GY K  +     +LF ++   N+    V+ S+
Sbjct: 205 ---EIDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASS 261

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y + G ++ A+ +F  +  K  V WTI+I G A+ G  ++A  L+ +M     +PD
Sbjct: 262 VLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPD 321

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T+ S++++CA+   L  G  VH          +  V +ALVDMY KCG   +A ++F+
Sbjct: 322 GYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFS 381

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            M  +++VSWN+M+ G A++GQ  +AL L+  M +E   PD  TFVGVL AC HAG +++
Sbjct: 382 TMQTRNVVSWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEE 441

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G +YF SM   +G+ P  +HY CM++L GRSG + +A+ L+ SM  EPN++IW T+L  C
Sbjct: 442 GKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVC 501

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
                ++  E    CLI L   +   Y MLSN++AA G W  VA++R  MK    +K S 
Sbjct: 502 VMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSA 561

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            S +E+DNEVH+F   D+ HP ++ I+  +N L + L+  G
Sbjct: 562 YSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLIRKLQEAG 602


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 188/569 (33%), Positives = 305/569 (53%), Gaps = 6/569 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +++ AQ +K   +   ++   LI+  + C  +  A  VF  ++  D+  +NTL+   + N
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLN 280

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A ++F D +         TY  ++K C       L + +H+ + K G+  D  V 
Sbjct: 281 EHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVM 340

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            +++D+YSKCG +  +    L M  G +++VSW +MI G ++  ++  A  LF  M E +
Sbjct: 341 TAIMDAYSKCGELDDAFNIFLLMP-GSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDN 399

Query: 214 A----VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
                 +++T+L          +  ++ +          + ++  YSK G+ E A  +F 
Sbjct: 400 VKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFK 459

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE-SGLLG 328
            +  K +V W+ ++S Y++ G    A  ++ +M   G+KP++ T+ S + ACA  +  + 
Sbjct: 460 MIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGID 519

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
            G + HA   KYR++    V +ALV MYA+ GS+D+A  VF   T +DLVSWN+M+ G A
Sbjct: 520 QGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYA 579

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            HG  ++AL  F +M+  G   D  TF+ V+  CTHAG + +G QYF SM  D+ I P +
Sbjct: 580 QHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTM 639

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHY CM+DL  R+G+L E + L++ MP    A++W TLLGACR H  VEL +     L+ 
Sbjct: 640 EHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLL 699

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L+  D   Y +LSNI+AA G W +   VR  M   + +K +G S +++ N+VH F  CD+
Sbjct: 700 LEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDK 759

Query: 569 LHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
            HP SEQIY  +  +   LK  G+    S
Sbjct: 760 SHPLSEQIYAKLKAMTTRLKQEGYCPNTS 788



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 108/408 (26%), Positives = 194/408 (47%), Gaps = 33/408 (8%)

Query: 135 QMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           + +H L  KCG+   ++ V  +L+D Y KCG  GV   + +F  M +R++V+W S++ G 
Sbjct: 119 EQLHCLCVKCGFDRAEVGVGTALVDMYMKCG--GVEDGRVVFEGMPKRNVVTWTSLLTGY 176

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIV 246
           V+G   S+   LF  M       +  ++ ++L   A  G ++L   +     K   R+ V
Sbjct: 177 VQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTV 236

Query: 247 -SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              ++++  YSK G +E AK +F +M  + +V W  +++G        EA +L+     +
Sbjct: 237 FVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRAS 296

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
             K    T  +++  CA    L L  ++H+ + K+ F  + NV  A++D Y+KCG LD+A
Sbjct: 297 MAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDA 356

Query: 366 MSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-- 422
            ++F  M   +++VSW AM+ G   +     A  LFSRM+++   P+++T+  VL A   
Sbjct: 357 FNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIP 416

Query: 423 -----THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
                 HA  I    Q+  S+               ++    + G  +EAL + + M   
Sbjct: 417 ILLPQIHAQIIKTNYQHAPSVGT------------ALLASYSKLGNTEEALSIFK-MIDH 463

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
            + + W  +L    +    + A  V    + ++G  P  +T+ S I A
Sbjct: 464 KDVVAWSAMLSCYSQAGDCDGATNVF-IKMSMQGMKPNEFTISSAIDA 510



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 9/231 (3%)

Query: 264 AKLLFDRMPAKTLVPWT----IIISGYAEKGMAK-EAARLYDQMEEAGLKPDDGTLISIL 318
           A+   D MP++     +    + I  Y  +G  + EA   +  +   G +     +  +L
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRGEALDHFVDVHRCG-RVQGAAVSRVL 106

Query: 319 AACAESGLLGLGMKVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
             C        G ++H    K  F +    V  ALVDMY KCG +++   VF GM K+++
Sbjct: 107 KVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNV 166

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V+W ++L G          + LF RM+ EG  P+ +TF  VL A    G +D G +  ++
Sbjct: 167 VTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLG-RRVHA 225

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
               +G    V     +I++  + G ++EA  + + M    + + W TL+ 
Sbjct: 226 QSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETR-DMVSWNTLMA 275


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 196/641 (30%), Positives = 321/641 (50%), Gaps = 74/641 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
             + ++LF +I     QR+ +    L+S  A   ++  A  VF ++ + D   +  ++  
Sbjct: 79  FREARRLFDEIPAA--QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVG 136

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             +     +A ++FLDM   G+    FT   +L +C       + + +H+ + K G    
Sbjct: 137 LNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSC 196

Query: 150 IFVPNSLIDSYSKCGVVGVS-----------------------------LAKKLFMSMGE 180
           + V NS+++ Y KCG    +                             LA  LF +M +
Sbjct: 197 VPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPD 256

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM-------PERDAVS----------------- 216
           R IVSWN++IAG  + G  ++A   F  M       P+   ++                 
Sbjct: 257 RTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQ 316

Query: 217 ----------------WNTILDGYAKAGEMNLAFELFEK--IPHRNIVSWSTMVWGYSKD 258
                            N ++  YAK+G +  A  + ++  +   N++S++ ++ GY K 
Sbjct: 317 VHAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKL 376

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GDM+ A+ +FD M  + +V WT +I GY + G   EA  L+  M  +G +P+  T+ ++L
Sbjct: 377 GDMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVL 436

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           + CA    L  G ++H    +   + +++V N++V MYA+ GSL  A  VF+ +  +K+ 
Sbjct: 437 SVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKET 496

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V+W +M+  LA HG GE A+GLF  M   G  PD+ TFVGVL ACTH GF+D+G +YF  
Sbjct: 497 VTWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQ 556

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           ++  +GI+P++ HY CM+DLL R+G   EA   +Q MPVEP+AI WG+LL ACR H   +
Sbjct: 557 LQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNAD 616

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           LAE   + L+ +   + G Y+ LSN+++A G WN  A +  + K    +K +G S   + 
Sbjct: 617 LAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIG 676

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           N VH F   D LHP+ + +Y+    +  D+K  G    L +
Sbjct: 677 NRVHVFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQS 717


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 194/556 (34%), Positives = 296/556 (53%), Gaps = 18/556 (3%)

Query: 51   IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
            I   L++    C  +  A  VF  +   D   +N++I     N    +A   F  M+  G
Sbjct: 493  IGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNG 552

Query: 111  VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
            +   NF+    L +C+   W  L + IH   +K G   D+ V N+L+  Y++     ++ 
Sbjct: 553  MVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETD--SINE 610

Query: 171  AKKLFMSMGERDIVSWNSMIAGLVK-GGELSEARRLFDEM------PERDAVSWNTILDG 223
             +K+F  M E D VSWNS I  L K    + +A + F EM      P R  V++  IL  
Sbjct: 611  CQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNR--VTFINILAA 668

Query: 224  YAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVP 278
             +    + L  ++   I   ++       + ++  Y K   ME  +++F RM  +   V 
Sbjct: 669  VSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVS 728

Query: 279  WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
            W  +ISGY   G+  +A  L   M + G K D  T  ++L+ACA    L  GM+VHA   
Sbjct: 729  WNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHACAV 788

Query: 339  KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
            +   + +  V +ALVDMYAKCG +D A   F  M  +++ SWN+M+ G A HG G+KAL 
Sbjct: 789  RACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALK 848

Query: 399  LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
            +F+RMK  G  PD  TFVGVL AC+H G +D+G ++F SM   YG+ P++EH+ CM+DLL
Sbjct: 849  IFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLL 908

Query: 459  GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA--VELAEEVLDCLIRLKGSDPGN 516
            GR+G +K+    +++MP++PN +IW T+LGAC + N    EL +     LI L+  +  N
Sbjct: 909  GRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVN 968

Query: 517  YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
            Y +LSN+ AA G+W  V   RL M+K   +K +G S V + + VH F   DQ HP+ E+I
Sbjct: 969  YVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTHPEKEKI 1028

Query: 577  YQMINTLGKDLKPVGH 592
            Y+ +  L   ++  G+
Sbjct: 1029 YEKLKELMNKIRDAGY 1044



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/542 (24%), Positives = 248/542 (45%), Gaps = 28/542 (5%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S+ + L+ +        +L     L  Q+ K     D +    LI+       +  A K+
Sbjct: 138 SQLQQLDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKL 197

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN--GKN 129
           F+++   ++  ++ LI    QN +  +A  +F  +   G+  ++F     L+AC   G  
Sbjct: 198 FDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGST 257

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L   IHA I K     D+ + N L+  YS C    +  A ++F  +  R+ V+WNS+
Sbjct: 258 GIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSG-SIDDAHRVFDEIKFRNSVTWNSI 316

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGY-------AKAGEMNLAFELFEKIPH 242
           I+   + G+   A +LF  M + + V  N   + Y       A     +    L E++  
Sbjct: 317 ISVYCRRGDAVSAFKLFSVM-QMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLT 375

Query: 243 R--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           R        ++   S +V G+++ G M+ AK++F +M  +  V    ++ G A +   +E
Sbjct: 376 RIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEE 435

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK-----CNTNVC 349
           AA+++ +M++  ++ +  +L+ +L+   E   L  G +    ++ Y F+        ++ 
Sbjct: 436 AAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIG 494

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           NALV+MY KC ++DNA SVF  M  KD VSWN+M+ GL  + + E+A+  F  MK  G  
Sbjct: 495 NALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMV 554

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P  ++ +  L +C+  G++  G Q  +     +G+   V     ++ L   +  + E  +
Sbjct: 555 PSNFSVISTLSSCSSLGWLTLGRQ-IHGEGFKWGLDLDVSVSNALLTLYAETDSINECQK 613

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           +   MP E + + W + +GA  K+ A  L        +   G  P   T + NI AA   
Sbjct: 614 VFFQMP-EYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFI-NILAAVSS 671

Query: 530 WN 531
           ++
Sbjct: 672 FS 673



 Score = 39.7 bits (91), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/98 (20%), Positives = 49/98 (50%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            L +  ++ A  ++  L+ D  +   L+   A C ++  A + F  +   +++ +N++I 
Sbjct: 776 TLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMIS 835

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
              ++    +A ++F  M++ G   D+ T+  +L AC+
Sbjct: 836 GYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACS 873


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 180/527 (34%), Positives = 293/527 (55%), Gaps = 12/527 (2%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF+ + + +V  +  L++  V N     A  +F  M EK   +        L+    
Sbjct: 98  ARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRI 157

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            +   L +MI           D     S+I    K G   V  A+++F  M ER +++W 
Sbjct: 158 DDACKLYEMIPD--------KDNIARTSMIHGLCKEG--RVDEAREIFDEMSERSVITWT 207

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
           +M+ G  +   + +AR++FD MPE+  VSW ++L GY + G +  A ELFE +P + +++
Sbjct: 208 TMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKPVIA 267

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + M+ G  + G++  A+ +FD M  +    W  +I  +   G   EA  L+  M++ G+
Sbjct: 268 CNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGV 327

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +P   TLISIL+ CA    L  G +VHA + + +F  +  V + L+ MY KCG L  +  
Sbjct: 328 RPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKL 387

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAG 426
           +F+    KD++ WN+++ G A HG GE+AL +F  M   G   P++ TFV  L AC++AG
Sbjct: 388 IFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAG 447

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            +++G++ + SME  +G+ P   HY CM+D+LGR+GR  EA+ ++ SM VEP+A +WG+L
Sbjct: 448 MVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSL 507

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGACR H+ +++AE     LI ++  + G Y +LSN++A+ G W  VA +R  MK    +
Sbjct: 508 LGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVR 567

Query: 547 KPSGASSVEVDNEVHEFSVCD-QLHPKSEQIYQMINTLGKDLKPVGH 592
           K  G S  EV+N+VH F+      HP+ E I ++++ L   L+  G+
Sbjct: 568 KSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGY 614



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/351 (29%), Positives = 172/351 (49%), Gaps = 50/351 (14%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           A+KLF S   + I SWNSM+AG        +AR+LFDEMP+R+ +SWN ++ GY K GE+
Sbjct: 36  ARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLVSGYMKNGEI 95

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           + A ++F+ +P RN+VSW+ +V GY  +G +++A+ LF +MP K  V WT+++ G+ + G
Sbjct: 96  DEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDG 155

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              +A +LY+ + +     D+    S++    + G +    ++   +++      T    
Sbjct: 156 RIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTT--- 208

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            +V  Y +   +D+A  +F+ M +K  VSW +ML G   +G+ E A  LF  M       
Sbjct: 209 -MVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMP------ 261

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
                V  + AC                               MI  LG+ G + +A R+
Sbjct: 262 -----VKPVIAC-----------------------------NAMISGLGQKGEIAKARRV 287

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
             SM  E N   W T++    + N  EL    L  L++ +G  P   T++S
Sbjct: 288 FDSMK-ERNDASWQTVI-KIHERNGFELEALDLFILMQKQGVRPTFPTLIS 336



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 173/376 (46%), Gaps = 85/376 (22%)

Query: 61  LCRQ--MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTY 118
           LC++  +  A ++F+++ +  V  + T++    QN+    A ++F  M EK   +     
Sbjct: 182 LCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVS----- 236

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
                      W  ++          GY     V N  I+            A++LF  M
Sbjct: 237 -----------WTSMLM---------GY-----VQNGRIED-----------AEELFEVM 260

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF- 237
             + +++ N+MI+GL + GE+++ARR+FD M ER+  SW T++  + + G    A +LF 
Sbjct: 261 PVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFI 320

Query: 238 -----------------------------EKIPHRNIVSW---------STMVWGYSKDG 259
                                         K  H  +V           S ++  Y K G
Sbjct: 321 LMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCG 380

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISIL 318
           ++  +KL+FDR P+K ++ W  IISGYA  G+ +EA +++ +M  +G  KP++ T ++ L
Sbjct: 381 ELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATL 440

Query: 319 AACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKD 376
           +AC+ +G++  G+K++ S+   +  K  T     +VDM  + G  + AM + + MT + D
Sbjct: 441 SACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPD 500

Query: 377 LVSWNAMLYGLAMHGQ 392
              W ++L     H Q
Sbjct: 501 AAVWGSLLGACRTHSQ 516



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 85/208 (40%), Gaps = 36/208 (17%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+  KQ+ AQ+++     D Y+A  L++    C ++  +  +F+     D+ ++N++I 
Sbjct: 346 SLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIIS 405

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               + L  +A +VF +M   G    N  T+   L AC                      
Sbjct: 406 GYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSAC---------------------- 443

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS-WNSMIAGLVKGGELSEARRLF 206
                      SY+     G+ + + +    G + I + +  M+  L + G  +EA  + 
Sbjct: 444 -----------SYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMI 492

Query: 207 DEMP-ERDAVSWNTILDGYAKAGEMNLA 233
           D M  E DA  W ++L       ++++A
Sbjct: 493 DSMTVEPDAAVWGSLLGACRTHSQLDVA 520


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 177/469 (37%), Positives = 272/469 (57%), Gaps = 12/469 (2%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           V+ +HA     G   +I V N LI  YS      +  A  LF  M  RD VSW+ M+ G 
Sbjct: 78  VRQVHAQASVHGMLENIVVANKLIYFYSY--YRALDDAYGLFDGMCVRDSVSWSVMVGGF 135

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----- 248
            K G+       F E+    A   N  L    +A   +L      ++ H  +  +     
Sbjct: 136 AKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR-DLKNLQMGRLIHHIVYKFGLDLD 194

Query: 249 ----STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
               + +V  Y K  ++E A+ LFD+M  + LV WT++I GYAE G A E+  L+++M E
Sbjct: 195 HFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G+ PD   +++++ ACA+ G +     +   I + +F+ +  +  A++DMYAKCG +++
Sbjct: 255 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 314

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  +F+ M +K+++SW+AM+     HGQG KAL LF  M   G  PDK T   +L AC+H
Sbjct: 315 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSH 374

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AG +++G+++F SM  DY +   V+HY C++DLLGR+GRL EAL+L++SM +E +  +WG
Sbjct: 375 AGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWG 434

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
             LGACR H  V LAE+    L+ L+  +PG+Y +LSNI+A  G W  VA +R  M + R
Sbjct: 435 AFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRR 494

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            +K  G + +EVDN+ H+FSV D  HP+S++IY+M+ +L   L+ VG+ 
Sbjct: 495 LKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYV 543



 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 174/469 (37%), Positives = 270/469 (57%), Gaps = 12/469 (2%)

Query: 134  VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            V+ +H      G   ++ V N L+  YS      +  A  LF  M  RD VSW+ M+ G 
Sbjct: 754  VRQVHXQASVHGMLQNLIVANKLVXFYSY--YRALDDAYGLFDGMCVRDSVSWSVMVGGF 811

Query: 194  VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----- 248
             K G+       F E+    A   N  L    +A   +L      ++ H  +  +     
Sbjct: 812  AKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACR-DLKNLQMGRLIHHIVYKFGLDLD 870

Query: 249  ----STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
                + +V  Y K  ++E A+ LFD+M  + LV WT++I GYAE G A E+  L+D+M E
Sbjct: 871  HFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE 930

Query: 305  AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
             G+ PD   +++++ ACA+ G +     +   I + +F+ +  +  A++DM+AKCG +++
Sbjct: 931  EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 990

Query: 365  AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
            A  +F+ M +K+++SW+AM+     HGQG KAL LF  M   G  P+K T V +L AC+H
Sbjct: 991  AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050

Query: 425  AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            AG +++G+++F  M  DY +   V+HY C++DLLGR+GRL EAL+L+ SM  E +  +WG
Sbjct: 1051 AGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110

Query: 485  TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
              LGACR H  V LAE+    L+ L+  +PG+Y +LSNI+A  G W  VA +R  M + R
Sbjct: 1111 AFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRR 1170

Query: 545  AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
             +K  G + +EVDN+ H+FSV D  HP+S++IY+M+ +LG  L+ VG+ 
Sbjct: 1171 LKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYV 1219



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 194/380 (51%), Gaps = 12/380 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +  L  C+NL Q +Q+ AQ     +  +  +A KLI   +  R +  A  +F+ +   D 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             ++ ++    +       F  F ++   G   DN+T PF+++AC       + ++IH +
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHI 185

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +YK G   D FV  +L+D Y KC    +  A+ LF  M ERD+V+W  MI G  + G+ +
Sbjct: 186 VYKFGLDLDHFVCAALVDMYVKCR--EIEDARFLFDKMQERDLVTWTVMIGGYAECGKAN 243

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMV 252
           E+  LF++M E     D V+  T++   AK G M+ A  + + I  +    +++  + M+
Sbjct: 244 ESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMI 303

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G +E A+ +FDRM  K ++ W+ +I+ Y   G  ++A  L+  M  +G+ PD  
Sbjct: 304 DMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKI 363

Query: 313 TLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           TL S+L AC+ +GL+  G++  +S+   Y  + +      +VD+  + G LD A+ +   
Sbjct: 364 TLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKS 423

Query: 372 MT-KKDLVSWNAMLYGLAMH 390
           MT +KD   W A L     H
Sbjct: 424 MTIEKDEGLWGAFLGACRTH 443



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 189/372 (50%), Gaps = 12/372 (3%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            NL Q +Q+  Q     + ++  +A KL+   +  R +  A  +F+ +   D   ++ ++ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 89   ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
               +       F  F ++   G   DN+T PF+++AC       + ++IH ++YK G   
Sbjct: 810  GFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDL 869

Query: 149  DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            D FV  +L+D Y KC    +  A+ LF  M ERD+V+W  MI G  + G  +E+  LFD+
Sbjct: 870  DHFVCAALVDMYGKCR--EIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDK 927

Query: 209  MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGD 260
            M E     D V+  T++   AK G M+ A  + + I  +    +++  + M+  ++K G 
Sbjct: 928  MREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGC 987

Query: 261  MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            +E A+ +FDRM  K ++ W+ +I+ Y   G  ++A  L+  M  +G+ P+  TL+S+L A
Sbjct: 988  VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYA 1047

Query: 321  CAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLV 378
            C+ +GL+  G++  + +   Y  + +      +VD+  + G LD A+ +   MT +KD  
Sbjct: 1048 CSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEG 1107

Query: 379  SWNAMLYGLAMH 390
             W A L     H
Sbjct: 1108 LWGAFLGACRTH 1119


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  330 bits (847), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 175/499 (35%), Positives = 276/499 (55%), Gaps = 42/499 (8%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           +Q IHA + K G   D  +  S + ++       ++ A  +F  +   ++  WN++I G 
Sbjct: 12  LQKIHAQLIKTGLAKDT-IAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIRGF 70

Query: 194 VKGGELSEARRLFDEM--------PER--------------------------------- 212
            +      A  LF +M        P+R                                 
Sbjct: 71  SQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLEN 130

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           D    NTIL+ Y   G +  A  +F+     ++V+W+TM+ G +K G+++ ++ LFD+M 
Sbjct: 131 DQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKML 190

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            +  V W  +ISGY  KG   EA  L+ +M+E G+KP + T++S+L ACA  G L  G  
Sbjct: 191 LRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEW 250

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  I K  F  N+ V  A++DMY+KCGS+D A+ VF    KK L  WN+++ GLAM G+
Sbjct: 251 IHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGR 310

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           G +A+ LFS+++     PD  +F+GVL AC HAG +D+   YF  M   Y I P ++HY 
Sbjct: 311 GNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYS 370

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+D+LGR+G L+EA  L++SMPV P+AIIWG+LL +CR++  +E+A++    +  L  +
Sbjct: 371 CMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPN 430

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           +  ++ +LSN++AA   + +    RL +K+ +  K  G S +EV+ EVHEF    +LHP+
Sbjct: 431 ESSSFILLSNVYAAHNHFEEAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHPR 490

Query: 573 SEQIYQMINTLGKDLKPVG 591
           S+ IY  ++ LG  LK +G
Sbjct: 491 SKDIYHALDDLGLTLKEMG 509



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 195/417 (46%), Gaps = 52/417 (12%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ----MGLAIKVFNDIQDPDVHL 82
           C ++   +++ AQ+IK  L +D   A ++   LA C      +  A  VF  I++P++ +
Sbjct: 6   CTSMKDLQKIHAQLIKTGLAKDTIAASRV---LAFCTSPAGDINYAYLVFTQIRNPNLFV 62

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFT--DNFTYPFLLKACNGKNWFHLVQMIHAL 140
           +NT+IR   Q+S    A  +F+DM      T     TYP + KA       H    +H  
Sbjct: 63  WNTIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGR 122

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G   D F+ N++++ Y  CG +G   A+++F      D+V+WN+MI GL K GE+ 
Sbjct: 123 VIKLGLENDQFIQNTILNMYVNCGFLGE--AQRIFDGATGFDVVTWNTMIIGLAKCGEID 180

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI--------------- 245
           ++RRLFD+M  R+ VSWN+++ GY + G    A ELF ++    I               
Sbjct: 181 KSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACA 240

Query: 246 ------------------------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                                   +  + ++  YSK G ++ A  +F   P K L  W  
Sbjct: 241 CLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNS 300

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-Y 340
           +I G A  G   EA RL+ ++E + LKPD  + I +L AC  +G++         +++ Y
Sbjct: 301 LILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLLMSETY 360

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
           + + +    + +VD+  + G L+ A  +   M    D + W ++L     +G  E A
Sbjct: 361 KIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIEMA 417



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 143/313 (45%), Gaps = 46/313 (14%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI------- 87
           QL  ++IKL L+ D +I   +++    C  +G A ++F+     DV  +NT+I       
Sbjct: 118 QLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCG 177

Query: 88  ----------RACVQNSLN--------------AQAFRVFLDMQEKGVFTDNFTYPFLLK 123
                     +  ++N+++               +A  +F  MQE+G+    FT   LL 
Sbjct: 178 EIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLN 237

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC         + IH  I K  +  +  V  ++ID YSKCG +  +L  ++F S  ++ +
Sbjct: 238 ACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKAL--QVFKSAPKKGL 295

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK 239
             WNS+I GL   G  +EA RLF ++       D VS+  +L     AG ++ A + F  
Sbjct: 296 SCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACNHAGMVDRAKDYFLL 355

Query: 240 IPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKG--- 290
           +        +I  +S MV    + G +E A+ L   MP     + W  ++S   E G   
Sbjct: 356 MSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMPVNPDAIIWGSLLSSCREYGNIE 415

Query: 291 MAKEAARLYDQME 303
           MAK+AA+  ++++
Sbjct: 416 MAKQAAKRVNELD 428



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 43/217 (19%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q + +   I+K +   +  +   +I   + C  +  A++VF       +  +N+LI  
Sbjct: 245 LRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILG 304

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              +    +A R+F  ++   +  D+ ++  +L ACN           HA +        
Sbjct: 305 LAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN-----------HAGM-------- 345

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-----DIVSWNSMIAGLVKGGELSEARR 204
                             V  AK  F+ M E       I  ++ M+  L + G L EA  
Sbjct: 346 ------------------VDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEE 387

Query: 205 LFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           L   MP   DA+ W ++L    + G + +A +  +++
Sbjct: 388 LIKSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRV 424


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/560 (32%), Positives = 307/560 (54%), Gaps = 20/560 (3%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  +   LI  LA    +  A KVF+ + +  V ++  LI   VQ     +A  +FLD  
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFL 246

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV-V 166
           E G   D +T   ++ AC       L   +H+L  + G+  D  V   L+D Y+K  +  
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQ 306

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGG-ELSEARRLFDEMPER----DAVSWNTIL 221
            +  A K+F  M + D++SW ++I+G V+ G + ++   LF EM       + +++++IL
Sbjct: 307 AMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSIL 366

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVSWST----MVWGYSKDGDMEMAKLLFDRMPAKTLV 277
              A   + +   ++   +   N  +  T    +V  Y++ G ME A+ +F+++  ++++
Sbjct: 367 KACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMI 426

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
             + I  G          A L  ++    +     T  S+++A A  G+L  G ++HA  
Sbjct: 427 --SCITEG--------RDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMT 476

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K  F  +  V N+LV MY++CG L++A   FN +  ++++SW +M+ GLA HG  E+AL
Sbjct: 477 LKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERAL 536

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF  M   G  P+  T++ VL AC+H G + +G +YF SM+RD+G++P++EHY CM+DL
Sbjct: 537 SLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDL 596

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           L RSG +KEAL  +  MP++ +A++W TLLGACR H+ +E+ E     +I L+  DP  Y
Sbjct: 597 LARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPY 656

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSN++A  G W++VA +R  M+     K +G S +EV+N  HEF   D  HP+++ IY
Sbjct: 657 VLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIY 716

Query: 578 QMINTLGKDLKPVGHAAKLS 597
             ++TL  ++K +G+    S
Sbjct: 717 GKLDTLVGEIKGMGYVPDTS 736



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 123/544 (22%), Positives = 220/544 (40%), Gaps = 89/544 (16%)

Query: 29  NLNQTKQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-PDVHLYNTL 86
           +L   + L  ++++ DL  RD  +A  L++  + C  +  A  VF+ ++   D+  +  +
Sbjct: 63  DLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAM 122

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
                +N    ++  +  +M E G+  + +T   +  AC                     
Sbjct: 123 ASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC--------------------- 161

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
                 P+ L      C V GV L     M +   DI   +++I  L + G+L+ AR++F
Sbjct: 162 -----FPHELY-----CLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLASARKVF 211

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELF----------EKIPHRNIVSWST------ 250
           D + E+  V W  ++  Y +      A E+F          ++    +++S  T      
Sbjct: 212 DGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTELGSVR 271

Query: 251 ---------MVWGYSKDG-----------------DMEMAKLLFDRMPAKTLVPWTIIIS 284
                    +  G++ D                   M+ A  +F+RM    ++ WT +IS
Sbjct: 272 LGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALIS 331

Query: 285 GYAEKGMAKEAAR-LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           GY + G+ +     L+ +M    +KP+  T  SIL ACA       G +VHA + K    
Sbjct: 332 GYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQA 391

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
               V NALV MYA+ G ++ A  VFN + ++ ++S            +G  A  L  R+
Sbjct: 392 AAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCIT---------EGRDA-PLDHRI 441

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
                G    TF  ++ A    G + KG Q  ++M    G          ++ +  R G 
Sbjct: 442 GRMDMGISSSTFASLISAAASVGMLTKG-QQLHAMTLKAGFGSDRFVSNSLVSMYSRCGY 500

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L++A R    +  + N I W +++    KH   E A  +   +I L G  P + T ++ +
Sbjct: 501 LEDACRSFNELK-DRNVISWTSMISGLAKHGYAERALSLFHDMI-LTGVKPNDVTYIAVL 558

Query: 524 FAAT 527
            A +
Sbjct: 559 SACS 562



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 24/204 (11%)

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           V N+L+ +Y++CG++ +A +VF+GM   +D+VSW AM   LA +G   ++L L   M + 
Sbjct: 86  VANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLES 145

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-------CMIDLLG 459
           G  P+ YT    LCA  HA F  +   Y        G++ ++  +G        +ID+L 
Sbjct: 146 GLLPNAYT----LCAVAHACFPHE--LYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLA 199

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNY 517
           R+G L  A ++   + +E   ++W  L+    ++   E AEE ++  +     G +P  Y
Sbjct: 200 RNGDLASARKVFDGL-IEKTVVVWTLLIS---RYVQGECAEEAVEIFLDFLEDGFEPDRY 255

Query: 518 TMLSNIFAATGDWNKVANVRLQMK 541
           TM S I A T    ++ +VRL ++
Sbjct: 256 TMSSMISACT----ELGSVRLGLQ 275



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 114/291 (39%), Gaps = 75/291 (25%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L + +QL A  +K     D +++  L+S  + C  +  A + FN+++D +V  + ++I  
Sbjct: 466 LTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISG 525

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
             ++    +A  +F DM   GV  ++ TY  +L AC+       GK +F  +Q  H LI 
Sbjct: 526 LAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIP 585

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  ++                                         M+  L + G + EA
Sbjct: 586 RMEHYA---------------------------------------CMVDLLARSGLVKEA 606

Query: 203 RRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
               +EMP + DA+ W T+L        + +      +I  +N++               
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVG-----EIAAKNVIE-------------- 647

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
                L  R PA    P+ ++ + YA+ G+  E AR+   M +  L  + G
Sbjct: 648 -----LEPRDPA----PYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETG 689


>gi|51535392|dbj|BAD37262.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|51535558|dbj|BAD37476.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 908

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 186/561 (33%), Positives = 305/561 (54%), Gaps = 48/561 (8%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN------FT 117
            +  A ++F+++   DV  +NTL+ A  +  L  +A R+F +M ++   + N      F 
Sbjct: 116 HLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFA 175

Query: 118 YPFLLKACN------GKNWFHLVQMIHALIYKCGYFGD-----------------IFVPN 154
              ++KA +       K+   L  M+     K G   +                 +   N
Sbjct: 176 AGQVVKALDVFDAMPAKDSASLSTMVSGFT-KNGMLHEAEELLTKRLSVTDMDKAVDAYN 234

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMG--------------ERDIVSWNSMIAGLVKGGELS 200
           +LI +Y + G    S AK+LF  +               ER++VSWNSM+   +K G++ 
Sbjct: 235 TLIVAYGQAG--RFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVC 292

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            AR LF+EMP++D VSWNT++ GY +A +M  + +LF ++P  + VSW+ ++ G+ + G+
Sbjct: 293 SARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGE 352

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            E A+  FDRMP +  + W  +ISGY + G    + +L+ +M E G  PD  T  S+LAA
Sbjct: 353 AEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAA 412

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
           CA   +LGLG ++H  + K  F  +T + NAL+ MY++CG+L++A ++F  M TKKDLVS
Sbjct: 413 CASIPMLGLGAQIHQLVEK-SFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVS 471

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNA++     HG+  KAL LF  M+     P   TFV +L AC +AG + +G   F +M 
Sbjct: 472 WNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMV 531

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            +YGI+ ++EHY  +++L+GR G+L +AL ++ SMP+ P+  +WG  LGAC       LA
Sbjct: 532 HEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLA 591

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +     L  +       Y ++ N+ A  G W   A VR +M++    K  G S ++++ +
Sbjct: 592 QMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGK 651

Query: 560 VHEFSVCDQLHPKSEQIYQMI 580
           +H F   D  HP +++I+ ++
Sbjct: 652 MHVFISGDTWHPNAQEIFSVL 672



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 179/414 (43%), Gaps = 78/414 (18%)

Query: 173 KLFMSMGERDIVSWNSMIAGLVKG---GELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           + F +M  RD VSWN+++A          L+ ARRLFDEMP+RD V+WNT+L  YA+ G 
Sbjct: 88  EFFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGL 147

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           M+ A  LF+++P RN  SW+TMV G+   G +  A  +FD MPAK     + ++SG+ + 
Sbjct: 148 MDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKN 207

Query: 290 GMAKEAARLY-DQMEEAGLKPDDGTLISILAACAESG----------LLGLGMKVHASIN 338
           GM  EA  L   ++    +        +++ A  ++G          ++  G   H  + 
Sbjct: 208 GMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLK 267

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM--------------- 383
           +  F+ N    N+++  Y K G + +A ++FN M  KDLVSWN M               
Sbjct: 268 RKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEK 327

Query: 384 ----------------LYGLAMHGQGEKALGLFSRMKDEG-------------------- 407
                           + G    G+ E A G F RM + G                    
Sbjct: 328 LFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISS 387

Query: 408 ---FG--------PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
              F         PD++TF  VL AC     +  G Q    +E+ +  +P       +I 
Sbjct: 388 VKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSF--VPDTAISNALIT 445

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           +  R G L +A  + + M  + + + W  L+G    H     A ++   + R K
Sbjct: 446 MYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAK 499



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/393 (23%), Positives = 172/393 (43%), Gaps = 65/393 (16%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           ++  N  +A L++ G    ARRLFD +P R  V+WN++L G A+  +   A E F+ +P 
Sbjct: 36  VMRHNRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPV 95

Query: 243 RNIVSWSTMVWGYSKD---GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           R+ VSW+T++  YS       +  A+ LFD MP + +V W  ++  YA +G+  EA RL+
Sbjct: 96  RDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLF 155

Query: 300 DQMEE---------------------------AGLKPDDGTLISILAACAESGLLGLGMK 332
           D+M +                           A    D  +L ++++   ++G+L    +
Sbjct: 156 DEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEE 215

Query: 333 -VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--------------KDL 377
            +   ++        +  N L+  Y + G   +A  +F+ + K              +++
Sbjct: 216 LLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNV 275

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSWN+M+      G    A  LF+ M D+    D  ++  ++   T A  + +  + F+ 
Sbjct: 276 VSWNSMMICYIKAGDVCSARALFNEMPDK----DLVSWNTMISGYTQASDMKESEKLFWE 331

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH---- 493
           M       P    +  +I    + G  + A      MP E   I W T++    K+    
Sbjct: 332 MPD-----PDTVSWNLIIQGFMQKGEAEHARGFFDRMP-ERGTISWNTMISGYEKNGNYI 385

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           ++V+L  ++L+      G  P  +T  S++ AA
Sbjct: 386 SSVKLFSKMLEV-----GEIPDRHT-FSSVLAA 412


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 302/560 (53%), Gaps = 17/560 (3%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           LI     CR+  +A KVF+ + + +V  +  L+   V N     +  +F +M  +G++ +
Sbjct: 410 LIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPN 469

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            FT+   LKAC   N       IH    K G+   + V NSL+D YSKCG   ++ A+K+
Sbjct: 470 EFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG--RINEAEKV 527

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------DAVSWNTILDGYAKAG 228
           F  M  R ++SWN+MIAG V  G  S A   F  M E       D  +  ++L   +  G
Sbjct: 528 FRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTG 587

Query: 229 EMNLAFELFEKI-------PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
            +    ++   +       P    ++ S +V  Y K G++  A+  FD++  KT++ W+ 
Sbjct: 588 MIYAGKQIHGFLVRSGFHCPSSATITGS-LVDLYVKCGNLFSARKAFDQIKEKTMISWSS 646

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GYA++G   EA  L+ +++E   + D   L SI+   A+  LL  G ++ A + K  
Sbjct: 647 LILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLP 706

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
               T+V N+LVDMY KCG +D A   F  M  KD++SW  M+ G   HG G+KA+ +F+
Sbjct: 707 SGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFN 766

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +M      PD+  ++ VL AC+H+G I +G + F  +    GI P+VEHY C++DLLGR+
Sbjct: 767 KMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRA 826

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           GRLKEA  LV +MP++PN  IW TLL  CR H  +EL +EV   L+R+ G +P NY M+S
Sbjct: 827 GRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMS 886

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           N++   G WN+  N R        QK +G S VE++ EVH F   +  HP +  I + + 
Sbjct: 887 NLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLK 946

Query: 582 TLGKDLK-PVGHAAKLSAEI 600
            + + L+  +G+   L  E+
Sbjct: 947 EVERRLREELGYVYGLKHEL 966



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 182/409 (44%), Gaps = 76/409 (18%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           ++++ N +I    K  E   A ++FD MPER+ VSW  ++ G+   G++N +  LF ++ 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 242 HRNI----VSWST-----------------------------------MVWGYSKDGDME 262
            + I     ++ST                                   +V  YSK G + 
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK--PDDGTLISILAA 320
            A+ +F  M  ++L+ W  +I+GY   G    A   +  M+EA +K  PD+ TL S+L A
Sbjct: 523 EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 321 CAESGLLGLGMKVHASINKYRFKC--NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           C+ +G++  G ++H  + +  F C  +  +  +LVD+Y KCG+L +A   F+ + +K ++
Sbjct: 583 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMI 642

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY---- 434
           SW++++ G A  G   +A+GLF R+++     D +    ++        + +G Q     
Sbjct: 643 SWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALV 702

Query: 435 --------------FYSMERDYGILPQVEH------------YGCMIDLLGRSGRLKEAL 468
                            M    G++ + E             +  MI   G+ G  K+A+
Sbjct: 703 VKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAV 762

Query: 469 RLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
            +   M    +EP+ + +  +L AC     ++  EE+   L+  +G  P
Sbjct: 763 SIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKP 811



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 151/312 (48%), Gaps = 11/312 (3%)

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           N+++ + ++  Y K  +  +A  +FD MP + +V WT ++SG+   G    +  L+ +M 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
             G+ P++ T  + L AC     L  G+++H    K  F+    V N+LVDMY+KCG ++
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG--PDKYTFVGVLCA 421
            A  VF  M  + L+SWNAM+ G    G G +AL  F  M++      PD++T   +L A
Sbjct: 523 EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           C+  G I  G Q    + R     P      G ++DL  + G L  A +    +  E   
Sbjct: 583 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK-EKTM 641

Query: 481 IIWGTL-LGACRKHNAVELAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRL 538
           I W +L LG  ++ + V    E +    RL+  S   +  +LS+I     D+  +   + 
Sbjct: 642 ISWSSLILGYAQEGDFV----EAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGK- 696

Query: 539 QMKKTRAQKPSG 550
           QM+    + PSG
Sbjct: 697 QMQALVVKLPSG 708



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 186/389 (47%), Gaps = 19/389 (4%)

Query: 23  NLHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           NL  C  LN  +   Q+    +K+  +    +   L+   + C ++  A KVF  +    
Sbjct: 476 NLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRS 535

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV--FTDNFTYPFLLKACNGKNWFHLVQMI 137
           +  +N +I   V     ++A   F  MQE  +    D FT   LLKAC+     +  + I
Sbjct: 536 LISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQI 595

Query: 138 HALIYKCGYF--GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           H  + + G+       +  SL+D Y KCG   +  A+K F  + E+ ++SW+S+I G  +
Sbjct: 596 HGFLVRSGFHCPSSATITGSLVDLYVKCG--NLFSARKAFDQIKEKTMISWSSLILGYAQ 653

Query: 196 GGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE---LFEKIPHRNIVSW 248
            G+  EA  LF  + E     D+   ++I+  +A    +    +   L  K+P     S 
Sbjct: 654 EGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSV 713

Query: 249 S-TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           S ++V  Y K G ++ A+  F  M  K ++ WT++I+GY + G+ K+A  ++++M    +
Sbjct: 714 SNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNI 773

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAM 366
           +PD+   +++L+AC+ SG++  G ++ + + + +  K        +VD+  + G L  A 
Sbjct: 774 EPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAK 833

Query: 367 SVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
            + + M  K ++  W  +L    +HG  E
Sbjct: 834 HLVDTMPIKPNVGIWQTLLSLCRVHGDIE 862


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 286/522 (54%), Gaps = 35/522 (6%)

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           ++F++F  MQ +G+  + FTYP +LK C       L + IH  + K G+  +++V + LI
Sbjct: 421 KSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLI 480

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
           D Y+K G +  +L  K+F  + E D+VSW +MIAG  +  + +EA  LF EM ++   S 
Sbjct: 481 DMYAKHGKLDHAL--KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSD 538

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD--------------GDMEM 263
           N    G+A A       +  ++   R I + S +  GYS D              G +  
Sbjct: 539 NI---GFASAISACAGIQALDQ--GRQIHAQSCLS-GYSDDLSIGNALVSLYARCGKVRE 592

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A   FD++ AK  V W  ++SG+A+ G  +EA  ++ QM +AGL+ +  T  S ++A A 
Sbjct: 593 AYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAAN 652

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              + +G ++H  I K  +   T V NAL+ +YAKCG++D+             +SWN+M
Sbjct: 653 IANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSM 699

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G + HG G +AL LF  MK     P+  TFVGVL AC+H G +D+G+ YF SM   + 
Sbjct: 700 ITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHN 759

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           ++P+ EHY C++DLLGRSG L  A R V+ MP++P+A++W TLL AC  H  +++ E   
Sbjct: 760 LVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAA 819

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L+ L+  D   Y ++SN++A +G W+     R  MK    +K  G S VEVDN VH F
Sbjct: 820 SHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAF 879

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEGVI 605
              DQ HP+++ IY+ +  L       G+  + ++ + +  I
Sbjct: 880 FAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEI 921



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 147/596 (24%), Positives = 252/596 (42%), Gaps = 95/596 (15%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           R  Y   KLI        +  A+ VF+++    +  +N +    +   L  +   +F  M
Sbjct: 95  RSFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRM 154

Query: 107 QEKGVFTDNFTYPFLLKACNGKN-WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
             K V  D   +  +L+ C+G    F  V+ IHA     G+    F+ N LID Y K G 
Sbjct: 155 LTKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGF 214

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--------------- 210
             +S AKK+F ++  RD VSW +MI+GL + G   EA  LF ++                
Sbjct: 215 --LSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSACTKVEFFEFGKQ 272

Query: 211 ----------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                       +    N ++  Y+++G ++ A ++F  +  R+ VS+++++ G ++ G 
Sbjct: 273 LHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGY 332

Query: 261 MEMAKLLFDRMPAKTLVPWTIIIS-------------------GYAEK-GMAKE------ 294
           +  A  LF +M      P  + ++                    YA K GM  +      
Sbjct: 333 INRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGS 392

Query: 295 -----------------------------AARLYDQMEEAGLKPDDGTLISILAACAESG 325
                                        + +++ QM+  G+ P+  T  SIL  C   G
Sbjct: 393 LLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
              LG ++H  + K  F+ N  V + L+DMYAK G LD+A+ +F  + + D+VSW AM+ 
Sbjct: 453 ATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIA 512

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G   H +  +AL LF  M+D+G   D   F   + AC     +D+G Q  ++     G  
Sbjct: 513 GYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQ-IHAQSCLSGYS 571

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
             +     ++ L  R G+++EA      +  + N + W +L+    +       EE L+ 
Sbjct: 572 DDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN-VSWNSLVSGFAQSGYF---EEALNI 627

Query: 506 LIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA-SSVEVDN 558
             ++   G +  ++T  S + AA      +ANVR+  +     + +G  S  EV N
Sbjct: 628 FAQMNKAGLEINSFTFGSAVSAAA----NIANVRIGKQIHGMIRKTGYDSETEVSN 679



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 140/590 (23%), Positives = 255/590 (43%), Gaps = 61/590 (10%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQL   ++K     + Y+   L++  +    +  A ++F+ +   D   YN+LI    Q 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQ 330

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +A  +F  M       D  T   LL AC         +  H+   K G   DI V 
Sbjct: 331 GYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVE 390

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            SL+D Y KC    +  A + F+  G+ D                L+++ ++F +M    
Sbjct: 391 GSLLDLYVKCS--DIKTAHEFFLCYGQLD---------------NLNKSFQIFTQMQIEG 433

Query: 214 AV----SWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAK 265
            V    ++ +IL      G  +L  ++  ++       N+   S ++  Y+K G ++ A 
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F R+    +V WT +I+GY +     EA  L+ +M++ G+K D+    S ++ACA   
Sbjct: 494 KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQ 553

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++HA      +  + ++ NALV +YA+CG +  A + F+ +  KD VSWN+++ 
Sbjct: 554 ALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVS 613

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G A  G  E+AL +F++M   G   + +TF   + A  +   +  G Q  + M R  G  
Sbjct: 614 GFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQ-IHGMIRKTGYD 672

Query: 446 PQVEHYGCMIDLLGRSGRLK------------------EALRLVQSMP---VEPNAIIWG 484
            + E    +I L  + G +                   EAL+L + M    V PN + + 
Sbjct: 673 SETEVSNALITLYAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFV 732

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGS-----DPGNYTMLSNIFAATGDWNK----VAN 535
            +L AC   + V L +E +     +  +      P +Y  + ++   +G  ++    V  
Sbjct: 733 GVLSAC---SHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEE 789

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD--QLHPKSEQIYQMINTL 583
           + +Q      +    A +V  + ++ EF+     +L PK    Y +++ +
Sbjct: 790 MPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNM 839



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 198/425 (46%), Gaps = 64/425 (15%)

Query: 106 MQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           M++ GV  ++ T+ +LL+ C N ++++  +++I   +     FGD+   N  ++ + +  
Sbjct: 72  MEQHGVRANSQTFLWLLEGCLNSRSFYDGLKLIDFYLA----FGDL---NCAVNVFDEMP 124

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGY 224
           +  +S   ++F           N+ IA  + G      RR+  +  E D   +  +L G 
Sbjct: 125 IRSLSCWNRIF-----------NTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGC 173

Query: 225 AKAGEMNLAFELFEKIPHRNIVSW---STMVWG-----YSKDGDMEMAKLLFDRMPAKTL 276
           +      ++F   E+I  + I S    ST +       Y K+G +  AK +F+ + A+  
Sbjct: 174 SGNA---VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDS 230

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W  +ISG ++ G  +EA  L+ Q+              +L+AC +      G ++H  
Sbjct: 231 VSWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGL 276

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           + K  F   T VCNALV +Y++ G+L +A  +F+ M+++D VS+N+++ GLA  G   +A
Sbjct: 277 VLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L LF +M  +   PD  T   +L AC   G +  G Q F+S     G+   +   G ++D
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLD 395

Query: 457 L----------------LGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGACRKHNAVE 497
           L                 G+   L ++ ++   M +E   PN   + ++L  C    A +
Sbjct: 396 LYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATD 455

Query: 498 LAEEV 502
           L E++
Sbjct: 456 LGEQI 460



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/266 (25%), Positives = 118/266 (44%), Gaps = 25/266 (9%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+Q +Q+ AQ        D  I   L+S  A C ++  A   F+ I   D   +N+L+  
Sbjct: 555 LDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSG 614

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  +F  M + G+  ++FT+   + A        + + IH +I K GY  +
Sbjct: 615 FAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSE 674

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V N+LI  Y+KCG +               D +SWNSMI G  + G   EA +LF++M
Sbjct: 675 TEVSNALITLYAKCGTI---------------DDISWNSMITGYSQHGCGFEALKLFEDM 719

Query: 210 PERDA----VSWNTILDGYAKAGEMNLAFELFEKIPH-RNIV----SWSTMVWGYSKDGD 260
            + D     V++  +L   +  G ++     F  +    N+V     ++ +V    + G 
Sbjct: 720 KQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGL 779

Query: 261 MEMAKLLFDRMPAK-TLVPWTIIISG 285
           +  AK   + MP +   + W  ++S 
Sbjct: 780 LSRAKRFVEEMPIQPDAMVWRTLLSA 805


>gi|357463685|ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491172|gb|AES72375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 182/511 (35%), Positives = 283/511 (55%), Gaps = 52/511 (10%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           D    P LLKAC+   +   V+ +HA   K G   D+F+  +++ +Y+KCGVV    A+K
Sbjct: 50  DPTVIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFIGTAIVAAYAKCGVV--CDARK 107

Query: 174 LFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--------------------- 212
           +F  M ER++V+WN+MI G ++ G+   A   F+EMP +                     
Sbjct: 108 VFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMPGKTRVSWSQMIGGFARNGDTLTA 167

Query: 213 ------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                       D V W  ++DGYAK GEM  A E+FE +P RN   WS+MV GY K GD
Sbjct: 168 RKFFDKVPYELKDVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGD 227

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  A+ +F R+P + L  W  +I+GY + G  ++A   + +M   G +PD+ T++S+L+A
Sbjct: 228 VMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEKALEAFGEMGVDGFEPDEFTVVSVLSA 287

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA+ G L  G ++H  I       N  V + L+DMYAKCG L NA  VF    ++++  W
Sbjct: 288 CAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLIDMYAKCGDLVNARLVFESCNERNVFCW 347

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NAM+ G A++GQ  + L    RM++     D  TF+ VL AC H G + + ++    ME 
Sbjct: 348 NAMIAGFAVNGQCNEVLEYLDRMQESNIRLDAVTFITVLSACAHGGLMSEALEVISKME- 406

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +YGI   + HYGCM+DLLGR+G+LKEA  L++ MP++PN  + G ++GAC  H+ +++AE
Sbjct: 407 EYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKRMPMKPNETVLGAMIGACWIHSDMKMAE 466

Query: 501 EVLDCLIRLKGSDPG-----NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +V+    ++ G+D       +  +LSNI+AA+  W K   +R  M    ++K  G SS+ 
Sbjct: 467 QVM----KMIGADSAACVNSHNVLLSNIYAASEKWEKAEMIRSSMVDGGSEKIPGYSSII 522

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
           + N   + S+       S++I + +N L  D
Sbjct: 523 LSNSAVDLSI-------SKEISRQMNGLSAD 546



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 10/244 (4%)

Query: 39  QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98
           ++ +L  +R+ ++   ++        +  A  +F  I   ++ ++N++I   VQN    +
Sbjct: 202 EVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIPVRNLEIWNSMIAGYVQNGCGEK 261

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           A   F +M   G   D FT   +L AC         + +H +I   G   + FV + LID
Sbjct: 262 ALEAFGEMGVDGFEPDEFTVVSVLSACAQLGDLDAGKQMHHMIECKGIAVNQFVLSGLID 321

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DA 214
            Y+KCG   +  A+ +F S  ER++  WN+MIAG    G+ +E     D M E     DA
Sbjct: 322 MYAKCG--DLVNARLVFESCNERNVFCWNAMIAGFAVNGQCNEVLEYLDRMQESNIRLDA 379

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           V++ T+L   A  G M+ A E+  K+        I  +  MV    + G ++ A  L  R
Sbjct: 380 VTFITVLSACAHGGLMSEALEVISKMEEYGIEMGIRHYGCMVDLLGRAGKLKEAYELIKR 439

Query: 271 MPAK 274
           MP K
Sbjct: 440 MPMK 443


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 312/561 (55%), Gaps = 13/561 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + A +IK     D ++    +     C  +  A KVF  + + D   +N ++    Q+
Sbjct: 72  EMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQS 131

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               +AF +F +M+   +  D+ T   L+++ + +    L++ +HA+  + G    + V 
Sbjct: 132 GHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVA 191

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSM--GERDIVSWNSMIAGLVKGGELSEARRLF----D 207
           N+ I +Y KCG   +  AK +F ++  G+R +VSWNSM       GE  +A  L+     
Sbjct: 192 NTWISTYGKCG--DLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLR 249

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEM 263
           E  + D  ++  +         +     +     H    ++I + +T +  YSK  D   
Sbjct: 250 EEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCS 309

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+LLFD M ++T V WT++ISGYAEKG   EA  L+  M ++G KPD  TL+S+++ C +
Sbjct: 310 ARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGK 369

Query: 324 SGLLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
            G L  G  + A  + Y  K  N  +CNAL+DMY+KCGS+  A  +F+   +K +V+W  
Sbjct: 370 FGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTT 429

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A++G   +AL LFS+M D  + P+  TF+ VL AC H+G ++KG +YF+ M++ Y
Sbjct: 430 MIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVY 489

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
            I P ++HY CM+DLLGR G+L+EAL L+++M  +P+A IWG LL AC+ H  V++AE+ 
Sbjct: 490 NISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQA 549

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
            + L  L+      Y  ++NI+AA G W+  A +R  MK+   +K  G S ++V+ + H 
Sbjct: 550 AESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHS 609

Query: 563 FSVCDQLHPKSEQIYQMINTL 583
           F+V +  H ++E IY  +N L
Sbjct: 610 FTVGEHGHVENEVIYFTLNGL 630



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/430 (27%), Positives = 197/430 (45%), Gaps = 35/430 (8%)

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V+ +N  IR  V  +   ++  +F +M+  G   +NFT+PF+ KAC         +M+HA
Sbjct: 17  VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 76

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K  ++ D+FV  + +D + KC    V  A K+F  M ERD  +WN+M++G  + G  
Sbjct: 77  HLIKSPFWSDVFVGTATVDMFVKCN--SVDYAAKVFERMPERDATTWNAMLSGFCQSGHT 134

Query: 200 SEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWST 250
            +A  LF EM       D+V+  T++   +    + L  E    +  R      +   +T
Sbjct: 135 DKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKL-LEAMHAVGIRLGVDVQVTVANT 193

Query: 251 MVWGYSKDGDMEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
            +  Y K GD++ AKL+F+ +    +T+V W  +   Y+  G A +A  LY  M     K
Sbjct: 194 WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 253

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           PD  T I++ A+C     L  G  +H+         +    N  + MY+K     +A  +
Sbjct: 254 PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLL 313

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ MT +  VSW  M+ G A  G  ++AL LF  M   G  PD  T + ++  C   G  
Sbjct: 314 FDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFG-- 371

Query: 429 DKGVQYFYSMERDYGILPQVEHYGC----------MIDLLGRSGRLKEALRLVQSMPVEP 478
                   S+E    I  + + YGC          +ID+  + G + EA  +  + P E 
Sbjct: 372 --------SLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EK 422

Query: 479 NAIIWGTLLG 488
             + W T++ 
Sbjct: 423 TVVTWTTMIA 432



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 158/365 (43%), Gaps = 15/365 (4%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           + ++L+   G   + +WN  I   V   +  E+  LF EM +R     N     +     
Sbjct: 4   IHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREM-KRGGFEPNNFTFPFVAKAC 62

Query: 230 MNLAFELFEKIPHRNIVS---WSTMVWG------YSKDGDMEMAKLLFDRMPAKTLVPWT 280
             LA     ++ H +++    WS +  G      + K   ++ A  +F+RMP +    W 
Sbjct: 63  ARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWN 122

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            ++SG+ + G   +A  L+ +M    + PD  T+++++ + +    L L   +HA   + 
Sbjct: 123 AMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRL 182

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALG 398
                  V N  +  Y KCG LD+A  VF  + + D  +VSWN+M    ++ G+   A G
Sbjct: 183 GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFG 242

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           L+  M  E F PD  TF+ +  +C +   + +G +  +S     G    +E     I + 
Sbjct: 243 LYCLMLREEFKPDLSTFINLAASCQNPETLTQG-RLIHSHAIHLGTDQDIEAINTFISMY 301

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            +S     A RL+  +      + W  ++    +   ++ A  +   +I+  G  P   T
Sbjct: 302 SKSEDTCSA-RLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK-SGEKPDLVT 359

Query: 519 MLSNI 523
           +LS I
Sbjct: 360 LLSLI 364



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 17/262 (6%)

Query: 27  CKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C+N   L Q + + +  I L   +D       IS  +       A  +F+ +       +
Sbjct: 266 CQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSW 325

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL--I 141
             +I    +     +A  +F  M + G   D  T   L+  C         + I A   I
Sbjct: 326 TVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADI 385

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           Y C    ++ + N+LID YSKCG   +  A+ +F +  E+ +V+W +MIAG    G   E
Sbjct: 386 YGCKR-DNVMICNALIDMYSKCG--SIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLE 442

Query: 202 ARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMV 252
           A +LF +M + D     +++  +L   A +G +   +E F  +     +S     +S MV
Sbjct: 443 ALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMV 502

Query: 253 WGYSKDGDMEMAKLLFDRMPAK 274
               + G +E A  L   M AK
Sbjct: 503 DLLGRKGKLEEALELIRNMSAK 524


>gi|116310106|emb|CAH67125.1| H0315E07.3 [Oryza sativa Indica Group]
 gi|222628896|gb|EEE61028.1| hypothetical protein OsJ_14863 [Oryza sativa Japonica Group]
          Length = 655

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 185/558 (33%), Positives = 301/558 (53%), Gaps = 41/558 (7%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------- 106
           L++  A C ++  A ++FN I D +V  +N ++    +N +  +A  +F DM        
Sbjct: 102 LLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELF-DMMPWRDDVS 160

Query: 107 --------------QEKGVFTDNFTYPFLLKACNG--KNWFHLVQMIHALIYKCGYFGDI 150
                         +E     D+   P     CN     +  L  M  A +     FG +
Sbjct: 161 WLTMISGYIKRKHVREARELFDSMPSP-PTSVCNALLSGYVELGYMRAAEVL----FGQM 215

Query: 151 FVPNS-----LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              N      +I  Y++ G +G+  A++LF  M E+D++S  +++ G ++ G +  A ++
Sbjct: 216 QTRNPVSWNVMITGYARAGSMGI--AQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKV 273

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           F +MP RD V+WNT++DG+ +   ++ A +LF ++P R+ +SW+ ++ GY + GDM+ A 
Sbjct: 274 FKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSAN 333

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
             F R P K  + W  +ISGY ++G    A  L  +M   GLKPD  TL  +++ CA   
Sbjct: 334 AWFRRAPNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLV 389

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            LG G  VH    K  F+ +  V ++L+ MY+KCG +  A  VF  + ++D V+WNAM+ 
Sbjct: 390 SLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIA 449

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
             A HG  ++AL +F  M   GF PD  TF+ +L AC H G++ +G  +F SM+ D+ ++
Sbjct: 450 TYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLV 509

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P+ +HY CM+DLLGRSG + +A    + +P +     W TL   C  H  ++L E +   
Sbjct: 510 PRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARN 569

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +++ + SD G YT+LSNI+AA   W+  A+VR  MK+   +K +G S +E+  EV  FS 
Sbjct: 570 VLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSS 629

Query: 566 CDQLHPKSEQIYQMINTL 583
            D  HP  EQI Q ++++
Sbjct: 630 NDSNHPLIEQICQEVDSI 647



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 173/341 (50%), Gaps = 53/341 (15%)

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+F  N+ I+ + +     V+ A+++F  M ER++ +WN M++GL++   L+EAR++FD
Sbjct: 32  GDVFQSNTAINEHFR--AGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFD 89

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP R++VSW  +L GYA+ G +  A ELF +IP RN+VSW+ MV GY+++G ++ A+ L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MP +  V W  +ISGY ++   +EA  L+D M                         
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPP--------------------- 188

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
                             T+VCNAL+  Y + G +  A  +F  M  ++ VSWN M+ G 
Sbjct: 189 ------------------TSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGY 230

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILP 446
           A  G    ++G+  R+ DE    D  +   ++      G +D   + F  M  RD     
Sbjct: 231 ARAG----SMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRD----- 281

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
               +  M+D   R+ RL +AL+L   MP + + I W  +L
Sbjct: 282 -TVAWNTMMDGFVRNDRLDDALKLFSEMP-DRDQISWNAIL 320



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 220/481 (45%), Gaps = 62/481 (12%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK---ACNGKNWFHLVQ 135
           DV   NT I    +    A A RVF +M E+ VFT N     L++       +  F  + 
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           + +++ +            +L+  Y++CG   V+ A++LF  + +R++VSWN+M++G  +
Sbjct: 93  VRNSVSWA-----------ALLTGYARCG--RVAEARELFNRIPDRNVVSWNAMVSGYAR 139

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            G +  AR LFD MP RD VSW T++ GY K   +  A ELF+ +P       + ++ GY
Sbjct: 140 NGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGY 199

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            + G M  A++LF +M  +  V W ++I+GYA  G    A RL+D+M E     D  +  
Sbjct: 200 VELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPE----KDVLSRT 255

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           +I+    ++G +    KV   +       +T   N ++D + +   LD+A+ +F+ M  +
Sbjct: 256 AIMRGYLQNGSVDAAWKVFKDMPHR----DTVAWNTMMDGFVRNDRLDDALKLFSEMPDR 311

Query: 376 DLVSWNAMLYGLAMHG---------------------------QGEKALGLFSRMKDEGF 408
           D +SWNA+L G    G                           + E AL L S M   G 
Sbjct: 312 DQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGL 371

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH----YGCMIDLLGRSGRL 464
            PD+ T   V+  C  A  +  G      M   + I    EH       +I +  + G +
Sbjct: 372 KPDQATLSVVISIC--ASLVSLGCG---KMVHLWAIKTGFEHDALVMSSLISMYSKCGLI 426

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
            EA ++ + + ++ + + W  ++     H   + A +V D + +  G  P + T LS + 
Sbjct: 427 SEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDMMTK-AGFRPDHATFLSILS 484

Query: 525 A 525
           A
Sbjct: 485 A 485



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 100/278 (35%), Gaps = 71/278 (25%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           IK   + D  +   LIS  + C  +  A +VF  I   D   +N +I     + L  +A 
Sbjct: 402 IKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEAL 461

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI-----FVPNS 155
           +VF  M + G   D+ T+  +L AC  K +         L   C +F  +      VP S
Sbjct: 462 KVFDMMTKAGFRPDHATFLSILSACAHKGY---------LYEGCYHFRSMQEDWNLVPRS 512

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDA 214
             D YS                           M+  L + G + +A      +P +   
Sbjct: 513 --DHYS--------------------------CMVDLLGRSGFIHQAYDFTRRIPSDHRT 544

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
            +W T+       GE+ L      +I  RN++           DG M             
Sbjct: 545 TAWETLFSVCNSHGEIQLG-----EIIARNVLK------ARPSDGGM------------- 580

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
               +T++ + YA K M   AA +   M+E GLK + G
Sbjct: 581 ----YTLLSNIYAAKEMWSSAASVRGFMKERGLKKETG 614


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 197/579 (34%), Positives = 313/579 (54%), Gaps = 16/579 (2%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  C+ +    ++    +K     D Y+A  LI   +  + +G A  +F+++   D+  +
Sbjct: 160 LKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSW 219

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    Q+    +A  +   ++      D+ T   LL AC     F+    IH+   K
Sbjct: 220 NAMISGYCQSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIK 275

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   ++FV N LID Y++ G   +   +K+F  M  RD++SWNS+I       +   A 
Sbjct: 276 HGLESELFVSNKLIDLYAEFG--RLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAI 333

Query: 204 RLFDEM------PE-RDAVSWNTILD--GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
            LF EM      P+    +S  +IL   G  +A      F L +     +I   + +V  
Sbjct: 334 SLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVM 393

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGT 313
           Y+K G ++ A+ +F+ +P   ++ W  IISGYA+ G A EA  +Y+ MEE G +  + GT
Sbjct: 394 YAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGT 453

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
            +S+L AC+++G L  GMK+H  + K     +  V  +L DMY KCG L++A+S+F  + 
Sbjct: 454 WVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP 513

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           + + V WN ++     HG GEKA+ LF  M DEG  PD  TFV +L AC+H+G +D+G  
Sbjct: 514 RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQW 573

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F  M+ DYGI P ++HYGCM+D+ GR+G+L+ AL+ ++SM ++P+A IWG LL ACR H
Sbjct: 574 CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVH 633

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             V+L +   + L  ++    G + +LSN++A+ G W  V  +R        +K  G SS
Sbjct: 634 GNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSS 693

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +EVDN+V  F   +Q HP  E++Y+ +  L   LK +G+
Sbjct: 694 MEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGY 732



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 152/516 (29%), Positives = 263/516 (50%), Gaps = 31/516 (6%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C NL   K L A+++     ++  I+ KL++       + LA   F+ IQ+ DV+ +N +
Sbjct: 64  CTNLQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLM 123

Query: 87  IRACVQNSLNAQAFRVF-LDMQEKGVFTDNFTYPFLLKAC----NGKNWFHLVQMIHALI 141
           I    +   +++  R F L M   G+  D  T+P +LKAC    +G         IH L 
Sbjct: 124 ISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK-------IHCLA 176

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D++V  SLI  YS+   VG   A+ LF  M  RD+ SWN+MI+G  + G   E
Sbjct: 177 LKFGFMWDVYVAASLIHLYSRYKAVGN--ARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-KIPH---RNIVSWSTMVWGYSK 257
           A  L + +   D+V+  ++L    +AG+ N    +    I H     +   + ++  Y++
Sbjct: 235 ALTLSNGLRAMDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAE 294

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +   + +FDRM  + L+ W  II  Y        A  L+ +M  + ++PD  TLIS+
Sbjct: 295 FGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISL 354

Query: 318 LAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
            +  ++ G +     V   ++ K  F  +  + NA+V MYAK G +D+A +VFN +   D
Sbjct: 355 ASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTD 414

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           ++SWN ++ G A +G   +A+ +++ M++EG    ++ T+V VL AC+ AG + +G++  
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 474

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH-- 493
             + ++ G+   V     + D+ G+ GRL++AL L   +P   N++ W TL+     H  
Sbjct: 475 GRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH 532

Query: 494 --NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
              AV L +E+LD     +G  P + T ++ + A +
Sbjct: 533 GEKAVMLFKEMLD-----EGVKPDHITFVTLLSACS 563


>gi|449530628|ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 280/548 (51%), Gaps = 80/548 (14%)

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGV 168
           G+F D      LL+ C    +F   + +H  +   G+      V N LI  Y +CG    
Sbjct: 63  GIFVD------LLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMYFECG--RD 114

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
             A+K+F  M  R++ SWN M+AG  K G+++ AR+LFD M E+D VSWNTI+  YAK G
Sbjct: 115 VEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQG 174

Query: 229 EMNLAFELFEKIPH---------------------------------------RNIVSWS 249
             N A  L+                                             N+V  S
Sbjct: 175 CFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSS 234

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA---- 305
           ++V  YSK G+M  A+ LFD M  K +  WT I+SGYA+ G    A+ L+ QM E     
Sbjct: 235 SIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVS 294

Query: 306 ---------------------------GLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
                                      G+ P+  T  S L ACA    L  G +VH  + 
Sbjct: 295 WSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLI 354

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKAL 397
           +  F+CNT V ++L+DMY+KCG L+ +  VF+ M  K+D+V WN M+  LA +G GEKA+
Sbjct: 355 RTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAM 414

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +F+ M + G  PD+ TF+ +L AC+H+G + +G+++F +M  D+G+ P  EHY C+IDL
Sbjct: 415 QMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYACLIDL 474

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G   E +  +++M  +P+  +W  LLG CR HN +EL  +V + +I LK      Y
Sbjct: 475 LGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELKPQSSAAY 534

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
             L++++A  G W  V  VR  M +   +K  G S ++V N+ H F   D+LHP  E+IY
Sbjct: 535 VSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLHPLKEEIY 594

Query: 578 QMINTLGK 585
            ++  L +
Sbjct: 595 LLLEQLAR 602



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 189/397 (47%), Gaps = 58/397 (14%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           R+ Y    +++  A    +  A K+F+ + + DV  +NT++ A  +     +A  ++ D 
Sbjct: 127 RNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDF 186

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           +   +  + F++  +L  C       L + +H  +   G+  ++ + +S++D+YSKCG  
Sbjct: 187 RRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYSKCG-- 244

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
            +  A+ LF  M  +DI +W ++++G  K G+++ A  LF +MPE++ VSW+ ++ GYA+
Sbjct: 245 EMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYAR 304

Query: 227 AGEMNLAFELFEKI------PHR---------------------------------NIVS 247
               + A + F K+      P +                                 N + 
Sbjct: 305 NSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIV 364

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
            S+++  YSK G +E +  +F  M  K  +V W  +IS  A+ G  ++A ++++ M E+G
Sbjct: 365 VSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESG 424

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASI--------NKYRFKCNTNVCNALVDMYAK 358
           LKPD  T I IL+AC+ SGL+  G++   ++        ++  + C       L+D+  +
Sbjct: 425 LKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYAC-------LIDLLGR 477

Query: 359 CGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            G     ++    M+ K D   W+A+L    +H   E
Sbjct: 478 AGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIE 514



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 156/365 (42%), Gaps = 46/365 (12%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +   + LF ++    L +D +    ++S  A    M  A ++F+ + + +   ++ 
Sbjct: 242 KCGEMRCARTLFDEM----LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSA 297

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    +NSL  +A   F  M + G+  + +T+   L AC         + +H  + +  
Sbjct: 298 LISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY 357

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARR 204
           +  +  V +SLID YSKCG++  S    +F  MG ++D+V WN+MI+ L + G   +A +
Sbjct: 358 FRCNTIVVSSLIDMYSKCGMLEASCC--VFHLMGNKQDVVVWNTMISALAQNGHGEKAMQ 415

Query: 205 LFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           +F++M E     D +++  IL   + +G +      F+            M + +    D
Sbjct: 416 MFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFK-----------AMTYDHGVFPD 464

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            E    L D +                  G A     L +++E    KPDD    ++L  
Sbjct: 465 QEHYACLIDLL------------------GRAGCFVELVNELENMSCKPDDRVWSALLGV 506

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL--- 377
           C     + LG KV   + + + + +     +L  +YA  G  ++   V   M +K +   
Sbjct: 507 CRIHNNIELGRKVAERVIELKPQSSAAYV-SLASLYAFLGKWESVEKVRELMDEKFIRKE 565

Query: 378 --VSW 380
             +SW
Sbjct: 566 RGISW 570



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 116/303 (38%), Gaps = 68/303 (22%)

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           + +G   EA    D++ + G++   G  + +L  CA++     G  VH  +    FK  T
Sbjct: 38  SSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPT 97

Query: 347 N-VCNALVDMYAKC-------------------------------GSLDNAMSVFNGMTK 374
             V N L+ MY +C                               G ++NA  +F+ M +
Sbjct: 98  TIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMME 157

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH---------- 424
           KD+VSWN ++   A  G   +A+GL+   +    G + ++F GVL  C            
Sbjct: 158 KDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQV 217

Query: 425 ------AGFIDKGV-------QYFYSMER-------DYGILPQVEHYGCMIDLLGRSGRL 464
                 AGF+   V        Y    E        D  ++  +  +  ++    + G +
Sbjct: 218 HGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDM 277

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSN 522
             A  L   MP E N + W  L+    +++   L  E LD   ++   G +P  YT  S 
Sbjct: 278 NSASELFHQMP-EKNPVSWSALISGYARNS---LGHEALDYFTKMMKFGINPEQYTFSSC 333

Query: 523 IFA 525
           + A
Sbjct: 334 LCA 336


>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
 gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
          Length = 673

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 195/585 (33%), Positives = 326/585 (55%), Gaps = 29/585 (4%)

Query: 15  RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
           RLLE   ++  K  + ++  ++  +++      D  +A  LIS+LA C  +  A + F+ 
Sbjct: 15  RLLEACARSPEK-SDRSRLAEIQFRVVATGFDADVTVATALISALARCGDLEGAREAFDR 73

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           I   +V  +N++I A  ++   A+A  ++  M+ +GV   + +Y   L +C+G       
Sbjct: 74  IPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSCSGLRDLEQG 133

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + IH  +   G+   +FV N+L++ YSKC    + LA++ F  +  +D+VSWNSMIA   
Sbjct: 134 KSIHDRVATDGFDTQVFVGNALVNMYSKCR--RLDLAREAFERIDSKDVVSWNSMIAAHS 191

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA----FELFEKIPHR-----NI 245
           + G   EA   +  M   + +    I   +A    ++L      +L ++   R     ++
Sbjct: 192 QLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDAIRLGLEGDL 251

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           +  S +V    K G ++ A+ +FDRM  + +V W+ +I+  AE G  ++A  L+ +M+  
Sbjct: 252 LVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRDAIELFHRMDLD 311

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G++P++ TL+S+L ACA +G +  G + HA ++   F+  TNV NALV+MY KCG L +A
Sbjct: 312 GIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFEAETNVANALVNMYGKCGHLGSA 371

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
            +VF+ MT +++VSW AML G A HG  E+A  +F  M  EG  P+  TFV VL  C+HA
Sbjct: 372 RTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVITFVSVLFNCSHA 431

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +  G++ F+ M  D+GI+P  EHYGC+IDLLGR+G L+EA  L+++MPVEP+   W +
Sbjct: 432 GVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRTMPVEPDKAAWNS 491

Query: 486 LLGACRKHNAVELAEEV--LDCLIRLK-GSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           LLGAC+ H+  + A+ +  L C + L   S P  Y +LSN++              + ++
Sbjct: 492 LLGACKVHSHTDRAKRIAKLACDLALPFASAP--YVLLSNMYTD------------EEQQ 537

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           +  ++   +S +EV   VHEF   D  HP+ E+I   +  L +++
Sbjct: 538 SDPEEDQCSSLIEVKGRVHEFVAGDWSHPRIEEIVAELQRLQEEM 582


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 189/552 (34%), Positives = 298/552 (53%), Gaps = 22/552 (3%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDPDVH 81
           L KCK + + KQ+ + +I   + ++     +LI   A      +  A  VF+ I    V+
Sbjct: 12  LEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVY 71

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           ++N++I+          A  ++ +MQ KG   D+FT+PF+LK C+  +     Q +H  I
Sbjct: 72  IWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRI 131

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G+  D++  + L++ Y  CG +   L  K+F  + + ++V+W S+IAG V   +  E
Sbjct: 132 VKTGFELDVYTSSCLLNMYVSCGDLNSGL--KVFEFIPKWNVVAWTSLIAGFVNNDQPKE 189

Query: 202 ARRLFDEMPERDAVSWNTILDGYA----------KAGEM------NLAFELFEKIPHRNI 245
           A RLF +M E + V  N I    A            G++       L F+ F+     N+
Sbjct: 190 ALRLFKDM-ENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNV 248

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           +  + ++  Y+K G +  A+ LFD+MP + LV W  +IS Y++ G   EA RL+  ME A
Sbjct: 249 ILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMA 308

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G  P+  T +S+++AC   G    G  +HA   +  F     +  AL+DMYAK G  D A
Sbjct: 309 GFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTA 368

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTH 424
           + +F+ + KKD+++W  M+ GLA+ G+G++AL +F RM++E    PD+ T++ VL AC+H
Sbjct: 369 LKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSH 428

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
            G +++G + F SM   YGI P +EHYGCMIDLL R+G  KEA  L+  MP +PNA I  
Sbjct: 429 LGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQPNATILS 488

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
           ++L  C  +  V LA  V   ++ L+ S  G Y +LSNI A   +W ++   R  +K   
Sbjct: 489 SILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKLARDMLKHKN 548

Query: 545 AQKPSGASSVEV 556
             K  G S VE+
Sbjct: 549 IGKTLGNSFVEI 560


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 195/609 (32%), Positives = 302/609 (49%), Gaps = 73/609 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++    ++  +  D  +A  L+   A C +   A ++F  +Q  D+  ++ +I 
Sbjct: 344 DLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIA 403

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A VQ     +A  +F +MQ + +  +  T   +L AC   +   L + IH    K     
Sbjct: 404 ALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDS 463

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+    +L+  Y+KCG    +L                                   F+ 
Sbjct: 464 DLSTGTALVSMYAKCGFFTAALTT---------------------------------FNR 490

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------------------VSWS 249
           M  RD V+WN++++GYA+ G+   A ++F K+    I                   +   
Sbjct: 491 MSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG 550

Query: 250 TMVWG--------------------YSKDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAE 288
           T + G                    Y+K G +  A+ LF++    K  V W +II+ Y +
Sbjct: 551 TCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQ 610

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G AKEA   + QM      P+  T +S+L A A       GM  HA I +  F  NT V
Sbjct: 611 NGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLV 670

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N+L+DMYAKCG L  +  +FN M  KD VSWNAML G A+HG G++A+ LFS M++   
Sbjct: 671 GNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQV 730

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
             D  +FV VL AC H G +++G + F+SM   Y I P +EHY CM+DLLGR+G   E L
Sbjct: 731 QIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETL 790

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             ++ MPVEP+A +WG LLG+CR H+ V+L E  LD L++L+  +P ++ +LS+I+A +G
Sbjct: 791 GFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSG 850

Query: 529 DWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
            W      R +M     +K  G S VE+ N+VH F V D+ HP+ E ++ + NTL + ++
Sbjct: 851 RWADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKME 910

Query: 589 PVGHAAKLS 597
            +G+    S
Sbjct: 911 KIGYVPDRS 919



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 144/508 (28%), Positives = 251/508 (49%), Gaps = 22/508 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L  CK+LN   Q+ AQII    +    I   LI+  +L  +  LA  VF+   +P   L+
Sbjct: 39  LSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHKCDLARSVFDSTPNPSRILW 97

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N++IRA  ++    +A  ++  M EKG+  D +T+ F+LKAC G          H  I +
Sbjct: 98  NSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   D+F+   L+D YSK G   +  A+++F  M +RD+V+WN+MIAGL +  +  EA 
Sbjct: 158 RGLERDVFIGAGLVDMYSKMG--DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAV 215

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST--MVWGYSK 257
             F  M     E  +VS   +  G  K   + L   +   +  R+  S  +  ++  YSK
Sbjct: 216 DFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSK 275

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            GD+++A+ +FD+M  +  V W  +++GYA  G   E   L+D+M+   ++ +  + +S 
Sbjct: 276 CGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSA 335

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
             A AE+  L  G ++H    + R   +  V   L+ MYAKCG  + A  +F G+  +DL
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFY 436
           V+W+A++  L   G  E+AL LF  M+++   P++ T + +L AC     +  G   + +
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCF 455

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK---- 492
           +++ D      +     ++ +  + G    AL     M    + + W +L+    +    
Sbjct: 456 TVKADMD--SDLSTGTALVSMYAKCGFFTAALTTFNRMSSR-DIVTWNSLINGYAQIGDP 512

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +NA+++  +     +RL   +P   TM+
Sbjct: 513 YNAIDMFYK-----LRLSAINPDAGTMV 535



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 148/513 (28%), Positives = 243/513 (47%), Gaps = 28/513 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL +      +I +  L+RD +I   L+   +    +  A +VF+ +   DV  +N +I 
Sbjct: 144 NLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIA 203

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFT----YPFLLKACNGKNWFHLVQMIHALIYKC 144
              Q+    +A   F  MQ  GV   + +    +P + K  N      L + IH  +++ 
Sbjct: 204 GLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSN----IELCRSIHGYVFRR 259

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
            +     V N LID YSKCG V V  A+++F  M ++D VSW +M+AG    G   E   
Sbjct: 260 DFSSA--VSNGLIDLYSKCGDVDV--ARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLE 315

Query: 205 LFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELF-----EKIPHRNIVSWSTMVWGY 255
           LFD+M       + VS  +     A+  ++    E+      ++I    +V+   MV  Y
Sbjct: 316 LFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVM-Y 374

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K G+ E AK LF  +  + LV W+ II+   + G  +EA  L+ +M+   +KP+  TL+
Sbjct: 375 AKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLM 434

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           SIL ACA+  LL LG  +H    K     + +   ALV MYAKCG    A++ FN M+ +
Sbjct: 435 SILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSR 494

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+V+WN+++ G A  G    A+ +F +++     PD  T VGV+ AC     +D+G    
Sbjct: 495 DIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGT-CI 553

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
           + +    G          +ID+  + G L  A  L        + + W  ++ A  ++  
Sbjct: 554 HGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGH 613

Query: 496 VELAEEVLDCL--IRLKGSDPGNYTMLSNIFAA 526
              A+E +     +RL+   P + T +S + AA
Sbjct: 614 ---AKEAISSFHQMRLENFHPNSVTFVSVLPAA 643



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 15/224 (6%)

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L++C     L   +++HA I    FK + ++ + L+++Y+     D A SVF+      
Sbjct: 38  LLSSCKHLNPL---LQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDLARSVFDSTPNPS 93

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            + WN+M+       Q  +AL ++  M ++G  PDKYTF  VL ACT A  + +GV +  
Sbjct: 94  RILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHG 153

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            ++R  G+   V     ++D+  + G LK A  +   MP + + + W  ++    +    
Sbjct: 154 EIDRR-GLERDVFIGAGLVDMYSKMGDLKRAREVFDKMP-KRDVVAWNAMIAGLSQS--- 208

Query: 497 ELAEEVLDCL--IRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           E   E +D    ++L G +P + ++L N+F       K++N+ L
Sbjct: 209 EDPCEAVDFFRSMQLVGVEPSSVSLL-NLFPGIC---KLSNIEL 248


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 192/571 (33%), Positives = 313/571 (54%), Gaps = 16/571 (2%)

Query: 36   LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
            +   +IK     D ++    +     C  +  A KVF  +   D   +N ++    Q+  
Sbjct: 670  VHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGH 729

Query: 96   NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
              + F +F +M+   +  D+ T   L+++ + +    L++++HA   + G      V N+
Sbjct: 730  TDKVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNT 789

Query: 156  LIDSYSKCGVVGVSLAKKLFMSM--GERDIVSWNSMIAGLVKGGELSEA----RRLFDEM 209
             I +Y KCG   +  AK +F ++  G+R +VSWNS+       GE  +A    R +  + 
Sbjct: 790  WISAYGKCG--DLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDE 847

Query: 210  PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAK 265
             + D  ++  +         +     +     H    ++I + +T +  YSK GD   A+
Sbjct: 848  FKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSAR 907

Query: 266  LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LLFD MP++T V WT++ISGYAEKG   EA  L+  M + G+ PD  TL+S+++ C + G
Sbjct: 908  LLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFG 967

Query: 326  LLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L +G  +    + Y  K  N  VCNAL+DMY+KCGS+D A  +F+  ++K +V+W  M+
Sbjct: 968  SLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMI 1027

Query: 385  YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
             G A++G   +A+ LFS+M D  + P+  TF+ VL AC H+G ++KG +YF+ M++ Y I
Sbjct: 1028 AGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNI 1087

Query: 445  LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
             P ++HY CM+DLLGR G+L EAL L+ +M  +P+A IWG LL AC+ H  V++AE+  D
Sbjct: 1088 SPGLDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAAD 1147

Query: 505  CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
             L  L+      Y  +SNI+AA G W+  A +R  MK    +K  G S ++V+ + H F+
Sbjct: 1148 SLFNLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGESVIQVNGKNHTFT 1207

Query: 565  VCDQLHPKSEQIYQMINTL---GKDLKPVGH 592
            V ++ H ++E IY  +N L    +D K + H
Sbjct: 1208 VGERGHMENEAIYSTLNGLSLFARDEKQILH 1238



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 117/432 (27%), Positives = 198/432 (45%), Gaps = 37/432 (8%)

Query: 80   VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            V+ +N  +R  V  +   ++  +F +M+  G   +NFT+PF+ KAC    +    +M+H 
Sbjct: 613  VNAWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHT 672

Query: 140  LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
             + K  ++ D+FV  + +D + KC    +  A K+F  M  RD  +WN+M++G  + G  
Sbjct: 673  HLIKSPFWSDVFVGTATVDMFVKCD--SLDYAAKVFERMPVRDATTWNAMLSGFCQSGHT 730

Query: 200  SEARRLF-----DEMPERDAVSWNTILDGYAKAGEMNL-----AFELFEKIPHRNIVSWS 249
             +   LF     DE+P  D+V+  T++   +    + L     AF +   +  +  VS +
Sbjct: 731  DKVFSLFREMRLDEIPP-DSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVS-N 788

Query: 250  TMVWGYSKDGDMEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            T +  Y K GD++ AKL+F+ +    +T+V W  +   +A  G A +A   Y  M     
Sbjct: 789  TWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEF 848

Query: 308  KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            KPD  T I++ A+C     L  G  +H+         +    N  + MY+K G   +A  
Sbjct: 849  KPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARL 908

Query: 368  VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
            +F+ M  +  VSW  M+ G A  G  ++AL LF  M   G  PD  T + ++  C   G 
Sbjct: 909  LFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFG- 967

Query: 428  IDKGVQYFYSMERDYGILPQVEHYGC----------MIDLLGRSGRLKEALRLVQSMPVE 477
                     S+E    I  + + YGC          +ID+  + G + EA R +     E
Sbjct: 968  ---------SLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEA-RDIFDNTSE 1017

Query: 478  PNAIIWGTLLGA 489
               + W T++  
Sbjct: 1018 KTMVTWTTMIAG 1029



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 152/352 (43%), Gaps = 15/352 (4%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           + +WN  +   V   +  E+  LF EM +R     N     +       LA+  + ++ H
Sbjct: 613 VNAWNFQVREAVNRNDPVESLLLFREM-KRGGFEPNNFTFPFVAKACARLAYIGYCEMVH 671

Query: 243 RNIVS---WSTMVWG------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
            +++    WS +  G      + K   ++ A  +F+RMP +    W  ++SG+ + G   
Sbjct: 672 THLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTD 731

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           +   L+ +M    + PD  T+++++ + +    L L   +HA   +        V N  +
Sbjct: 732 KVFSLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLGVDLQATVSNTWI 791

Query: 354 DMYAKCGSLDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
             Y KCG LD+A  VF  + + D  +VSWN++    A+ G+   A G +  M  + F PD
Sbjct: 792 SAYGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPD 851

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             TF+ +  +C +   + +G +  +S     G    +E     I +  +SG    A  L 
Sbjct: 852 LSTFINLAASCQNPQTLTQG-RLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLF 910

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
             MP     + W  ++    +   ++ A  +   + +  G +P   T+LS I
Sbjct: 911 DIMPSR-TCVSWTVMISGYAEKGDMDEALALFHAMAKT-GVNPDLVTLLSLI 960



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 122/304 (40%), Gaps = 41/304 (13%)

Query: 27   CKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            C+N   L Q + + +  I L   +D       IS  +       A  +F+ +       +
Sbjct: 862  CQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSW 921

Query: 84   NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI--HALI 141
              +I    +     +A  +F  M + GV  D  T   L+  C       + + I   A +
Sbjct: 922  TVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADM 981

Query: 142  YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            Y C    ++ V N+LID YSKCG   +  A+ +F +  E+ +V+W +MIAG    G   E
Sbjct: 982  YGCKK-DNVMVCNALIDMYSKCG--SIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLE 1038

Query: 202  ARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
            A  LF +M + D     +++  +L   A +G +   +E F                    
Sbjct: 1039 AMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYF-------------------- 1078

Query: 258  DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
                 + K +++  P   L  ++ ++     KG   EA  L   M     KPD G   ++
Sbjct: 1079 ----HIMKQVYNISPG--LDHYSCMVDLLGRKGKLDEALELIHNM---SAKPDAGIWGAL 1129

Query: 318  LAAC 321
            L+AC
Sbjct: 1130 LSAC 1133


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/577 (33%), Positives = 307/577 (53%), Gaps = 10/577 (1%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C N      L A  I      + ++   L+       ++  A KVF+ + + D  L+NT+
Sbjct: 121 CSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTM 180

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   V+N     + ++F +M   GV  D+ T   +L A        +   I  L  K G+
Sbjct: 181 INGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGF 240

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
               +V   LI  YSKCG   V+ A+ LF  +   D++++N+MI+G    G    + +LF
Sbjct: 241 GFCDYVLTGLISLYSKCG--DVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLF 298

Query: 207 DEMP-ERDAVSWNTI---LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YSKD 258
            E+    + VS +TI   +  ++  G ++LA  +        I+   T+       Y+K 
Sbjct: 299 RELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKL 358

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
            ++++A+ LFD  P KT+V W  +ISGY + G  + A  L+ +M +    P+  T+ +IL
Sbjct: 359 NEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTIL 418

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA+ G L  G  VH  I     + N  V  ALVDMYAKCG++  A  +F+ M++K+ V
Sbjct: 419 SACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTV 478

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +WN M++G  +HG G +AL L++ M   G+ P   TF+ VL AC+HAG + +G + F++M
Sbjct: 479 TWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNM 538

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
              Y I P +EHY CM+D+LGRSG+L++AL  ++ MPVEP   +WGTLLGAC  H   ++
Sbjct: 539 VNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDI 598

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           A    + L  L     G Y +LSNI++   ++ K A++R  +KK +  K  G + +EV+ 
Sbjct: 599 ARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNG 658

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
             H F   D+ H  +  IY  +  L   ++ +G+ A+
Sbjct: 659 TPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAE 695



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 137/520 (26%), Positives = 238/520 (45%), Gaps = 31/520 (5%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           ++K        Q  AQ I    + D     KL   L        A  +F  +  PD+ L+
Sbjct: 19  INKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLF 78

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           N L+R    N   + +  ++  ++     + DNFTY F + AC+     HL+ ++HA   
Sbjct: 79  NVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDK--HLM-LLHAHSI 135

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
             GY  ++FV ++L+D Y  C    V  A+K+F  M ERD V WN+MI GLVK     ++
Sbjct: 136 IDGYGSNVFVGSALVDLY--CKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDS 193

Query: 203 RRLFDEM----PERDAVSWNTILDGYAKAGE-----------MNLAFELFEKIPHRNIVS 247
            +LF EM       D+ +   +L   A+  E           + + F   + +       
Sbjct: 194 IQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYV------- 246

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            + ++  YSK GD+  A+LLF R+    L+ +  +ISG+   G  + + +L+ ++  +G 
Sbjct: 247 LTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGE 306

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           +    T++ ++   +  G L L   +H    K     N  V  A   +Y K   +D A  
Sbjct: 307 RVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARH 366

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           +F+   +K +V+WNAM+ G   +G  E A+ LF  M    F P+  T   +L AC   G 
Sbjct: 367 LFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGS 426

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +  G ++ + + +   + P +     ++D+  + G + EA +L  SM  E N + W T++
Sbjct: 427 LSFG-KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNTMI 484

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
                H     A ++ + ++ L G +P   T LS ++A +
Sbjct: 485 FGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYACS 523


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/548 (33%), Positives = 307/548 (56%), Gaps = 24/548 (4%)

Query: 71  VFNDIQD-PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           +FN   D  +V  +N++I    ++  + +A R F  M++  +  +  T+P  +K+C+   
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 130 WFHLVQMIH--ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             H  +  H  ALI+  G+  D+FV ++L+D YSKCG   +  A+ LF  +  R+IVSW 
Sbjct: 167 DLHSGRQAHQQALIF--GFEPDLFVSSALVDMYSKCG--ELRDARTLFDEISHRNIVSWT 222

Query: 188 SMIAGLVKGGELSEARRLFDEMPER------------DAVSWNTILDGYAKAGEMNLAFE 235
           SMI G V+  +   A  LF E                D ++  ++L   ++  E ++   
Sbjct: 223 SMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEG 282

Query: 236 LFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
           +   +  R    ++   +T++  Y+K G++ +++ +FD M  + ++ W  II+ YA+ GM
Sbjct: 283 VHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGM 342

Query: 292 AKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
           + E+  ++ +M + G +  +  TL ++L ACA SG   LG  +H  + K   + N  V  
Sbjct: 343 STESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGT 402

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +++DMY KCG ++ A   F+ M +K++ SW+AM+ G  MHG  ++AL +F  M   G  P
Sbjct: 403 SIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKP 462

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           +  TFV VL AC+HAG +++G  +F +M  ++ + P VEHYGCM+DLLGR+G LKEA  L
Sbjct: 463 NYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDL 522

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++ M + P+ ++WG LLGACR H  V+L E     L  L   + G Y +LSNI+A  G W
Sbjct: 523 IKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRW 582

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
             V  +R+ MK +   KP G S V++   VH F V D+ HP+ E+IY+ +  L   L+ V
Sbjct: 583 EDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEV 642

Query: 591 GHAAKLSA 598
           G+   +++
Sbjct: 643 GYVPDMTS 650



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 127/265 (47%), Gaps = 12/265 (4%)

Query: 24  LHKCKNLNQ---TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  +++   T+ +   +IK   + D  +   L+ + A C ++G++ +VF+ + + DV
Sbjct: 268 LSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDV 327

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHA 139
             +N++I    QN ++ ++  +F  M + G    N  T   +L AC       L + IH 
Sbjct: 328 ISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHD 387

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + K G   ++FV  S+ID Y KCG   V +A+K F  M E+++ SW++M+AG    G  
Sbjct: 388 QVIKMGLESNVFVGTSIIDMYCKCG--KVEMARKAFDRMREKNVKSWSAMVAGYGMHGHA 445

Query: 200 SEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            EA  +F EM     + + +++ ++L   + AG +   +  F+ + H   V      +G 
Sbjct: 446 KEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGC 505

Query: 256 SKD--GDMEMAKLLFDRMPAKTLVP 278
             D  G     K  FD +    L P
Sbjct: 506 MVDLLGRAGYLKEAFDLIKGMKLRP 530



 Score = 46.2 bits (108), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 50/210 (23%), Positives = 96/210 (45%), Gaps = 27/210 (12%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K +  Q+IK+ L+ + ++   +I     C ++ +A K F+ +++ +V  ++ ++     +
Sbjct: 383 KCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMH 442

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCG- 145
               +A  VF +M   GV  +  T+  +L AC+       G +WF    M H    + G 
Sbjct: 443 GHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFK--AMSHEFDVEPGV 500

Query: 146 -YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DIVSWNSMIAGL-----VKGGE 198
            ++G       ++D   + G   +  A  L   M  R D V W +++        V  GE
Sbjct: 501 EHYG------CMVDLLGRAGY--LKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGE 552

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           +S AR+LF E+  ++   +  + + YA AG
Sbjct: 553 IS-ARKLF-ELDPKNCGYYVLLSNIYADAG 580


>gi|413953302|gb|AFW85951.1| hypothetical protein ZEAMMB73_518426 [Zea mays]
          Length = 620

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 158/425 (37%), Positives = 262/425 (61%), Gaps = 1/425 (0%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           V  A++LF  M ERD+++W +M+ G+ + G + EAR LFD MPER+ VSWN ++ GY + 
Sbjct: 181 VDKARELFGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRN 240

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
             ++ A +LF K+PHR+I S + M+ G+ ++ D++ A+ LFD MP + +V WT +++GY 
Sbjct: 241 HRLDEALDLFTKMPHRDIASCNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNGYL 300

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           +   ++ +  L+  M  +G++P+  T +  L AC++   L  G +VH  I K  F+ +T 
Sbjct: 301 KGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVDTF 360

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           V +AL+++YAKCG +  A  +F+   +KDL+SWN ++   A HG G +A+ L+ +M+  G
Sbjct: 361 VGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNG 420

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
           + P+  T+V +L AC+H+G +D+G++ F SM  D  I  + EHY C+IDL  R+GRL +A
Sbjct: 421 YRPNDVTYVVLLSACSHSGLVDEGLKIFESMVNDRSIAVRDEHYTCLIDLCSRAGRLDDA 480

Query: 468 LRLVQSMPVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
            RL+  + ++P +  +W  LLG C  H    +       LI+ +  + G YT+LSNI+A+
Sbjct: 481 KRLIHYLKIKPASGSVWSALLGGCNAHGNESIGNLAARNLIQAEPDNAGTYTLLSNIYAS 540

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
            G W + A +R +M     +K  G S +EV N+VH F   D+ H +S+ IY ++  +   
Sbjct: 541 AGKWKEAAEIRSEMNNRGLKKQPGCSWIEVANKVHVFVARDKSHSESDLIYGLLQNIHYM 600

Query: 587 LKPVG 591
           ++ VG
Sbjct: 601 MRIVG 605



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 182/404 (45%), Gaps = 66/404 (16%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           D+    +L+ +Y++ G++    A+ LF  S   R++V+W ++++G  + G + EA  LF 
Sbjct: 70  DVVSWTALVSAYARRGML--RDARSLFDRSDARRNVVTWTALLSGYARAGLVDEAEVLFQ 127

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP+R+ VSWNT+L+ YA AG    A  LF+++P R+  SW+ ++    + G ++ A+ L
Sbjct: 128 RMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMPVRDAGSWNILLAMLVRSGSVDKAREL 187

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F RMP + ++ WT ++ G A  G   EA  L+D M E  +   +  +            L
Sbjct: 188 FGRMPERDVMAWTTMVDGVARSGNVDEARLLFDSMPERNVVSWNAMISGYTRNHRLDEAL 247

Query: 328 GLGMKV-HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
            L  K+ H  I           CN ++  + +   L  A  +F+ M ++++V+W  M+ G
Sbjct: 248 DLFTKMPHRDIAS---------CNIMITGFIQNKDLKRARKLFDEMPERNVVTWTTMMNG 298

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ------------- 433
                Q E +LGLF  M   G  P++ TF+G L AC+    + +G Q             
Sbjct: 299 YLKGKQSELSLGLFRGMLMSGIRPNQVTFLGALDACSDLATLCEGKQVHQMICKTAFQVD 358

Query: 434 -----------------------YFYSMERDY----GILPQVEHYGCMIDLLGRSGRLKE 466
                                  +  S E+D     GI+    H+G  I          E
Sbjct: 359 TFVGSALMNVYAKCGEVGLARKLFDLSREKDLISWNGIIAAYAHHGVGI----------E 408

Query: 467 ALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           A+ L + M      PN + +  LL AC     V+   ++ + ++
Sbjct: 409 AIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKIFESMV 452



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 159/342 (46%), Gaps = 51/342 (14%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNI 245
           N +I  L   G + +AR+LFD  PERD VSW  ++  YA+ G +  A  LF++    RN+
Sbjct: 44  NRLIVDLAAAGRVWDARKLFDGTPERDVVSWTALVSAYARRGMLRDARSLFDRSDARRNV 103

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           V+W+ ++ GY++ G ++ A++LF RMP + +V W  ++  YA  G A +A  L+D+M   
Sbjct: 104 VTWTALLSGYARAGLVDEAEVLFQRMPQRNVVSWNTMLEAYAVAGRAGDACALFDRMP-- 161

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
               D G+   +LA    SG +    ++   + +      T     +VD  A+ G++D A
Sbjct: 162 --VRDAGSWNILLAMLVRSGSVDKARELFGRMPERDVMAWTT----MVDGVARSGNVDEA 215

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             +F+ M ++++VSWNAM+ G   + + ++AL LF++M                C     
Sbjct: 216 RLLFDSMPERNVVSWNAMISGYTRNHRLDEALDLFTKMPHRDIAS---------CNIMIT 266

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           GFI                               ++  LK A +L   MP E N + W T
Sbjct: 267 GFI-------------------------------QNKDLKRARKLFDEMP-ERNVVTWTT 294

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           ++    K    EL+  +   ++ + G  P   T L  + A +
Sbjct: 295 MMNGYLKGKQSELSLGLFRGML-MSGIRPNQVTFLGALDACS 335



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 110/241 (45%), Gaps = 25/241 (10%)

Query: 21  LQNLHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L  L  C +L    + KQ+   I K   Q D ++   L++  A C ++GLA K+F+  ++
Sbjct: 328 LGALDACSDLATLCEGKQVHQMICKTAFQVDTFVGSALMNVYAKCGEVGLARKLFDLSRE 387

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNW 130
            D+  +N +I A   + +  +A  ++  MQ  G   ++ TY  LL AC+       G   
Sbjct: 388 KDLISWNGIIAAYAHHGVGIEAIHLYEKMQGNGYRPNDVTYVVLLSACSHSGLVDEGLKI 447

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL--FMSMGERDIVSWNS 188
           F  +    ++  +  ++        LID  S+ G   +  AK+L  ++ +       W++
Sbjct: 448 FESMVNDRSIAVRDEHY------TCLIDLCSRAG--RLDDAKRLIHYLKIKPASGSVWSA 499

Query: 189 MIAGLVKGGELS----EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           ++ G    G  S     AR L    P+ +A ++  + + YA AG+   A E+  ++ +R 
Sbjct: 500 LLGGCNAHGNESIGNLAARNLIQAEPD-NAGTYTLLSNIYASAGKWKEAAEIRSEMNNRG 558

Query: 245 I 245
           +
Sbjct: 559 L 559


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 198/579 (34%), Positives = 324/579 (55%), Gaps = 14/579 (2%)

Query: 24  LHKCKNLNQTKQ---LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C++ +  KQ   + A ++K     + ++A  LI+  A   +MG A  +F ++ D D 
Sbjct: 325 LQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDT 384

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA-CNGKNWFHLVQMIHA 139
             +N+++   VQN L  +A + + +M++ G   D      ++ A     N  + +Q IHA
Sbjct: 385 ISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQ-IHA 443

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
              K G   D+ V NSL+D Y+K     +     +F  M ++D+VSW ++IAG  + G  
Sbjct: 444 YAMKNGLDSDLQVGNSLVDMYAK--FCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSH 501

Query: 200 SEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR---NIVSWSTMV 252
           S A  LF E+     + D +  ++IL   +    ++   E+   I  +   ++V  + +V
Sbjct: 502 SRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQNGIV 561

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y + G+++ A  +F+ +  K +V WT +IS Y   G+A EA  L+  M+E G++PD  
Sbjct: 562 DVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSI 621

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           +L+SIL+A A    L  G ++H  + +  F    ++ + LVDMYA+CG+L+ + +VFN +
Sbjct: 622 SLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFI 681

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             KDLV W +M+    MHG G  A+ LF RM+DE   PD   FV VL AC+H+G +++G 
Sbjct: 682 RNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGR 741

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           ++  SM+ +Y + P  EHY C++DLLGR+  L+EA + V+ M VEP A +W  LLGAC+ 
Sbjct: 742 RFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQI 801

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H+  EL E     L+ +   +PGNY ++SN++AA   W  V  VR++MK +  +K  G S
Sbjct: 802 HSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCS 861

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            +EV N+VH F   D+ HP+S +IY  ++ + + L   G
Sbjct: 862 WIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEG 900



 Score =  199 bits (506), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 153/530 (28%), Positives = 265/530 (50%), Gaps = 24/530 (4%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLD-LQRDPYIAPKLISSLALCRQ 64
           ++P+ FS        L+     K L++ +Q+ A +I  + L    +++ +L+     C  
Sbjct: 106 QSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGC 165

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +  A K+F+ +    +  +N +I A V N     +  ++ +M+  G+  D  T+P +LKA
Sbjct: 166 LVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKA 225

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-DI 183
           C           +H L  K GY   +FV NS++  Y+KC    ++ A++LF  M E+ D+
Sbjct: 226 CGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCN--DLNGARQLFDRMPEKEDV 283

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL----------DGYAKAGEMNLA 233
           VSWNSMI+     G+  EA RLF EM ++ +++ NT              + K G M + 
Sbjct: 284 VSWNSMISAYSSNGQSIEALRLFGEM-QKASLAPNTYTFVAALQACEDSSFIKQG-MFIH 341

Query: 234 FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
             + +   + N+   + ++  Y++ G M  A  +F  M     + W  ++SG+ + G+  
Sbjct: 342 ATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYH 401

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
           EA + Y +M +AG KPD   +ISI+AA A SG    GM++HA   K     +  V N+LV
Sbjct: 402 EALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLV 461

Query: 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           DMYAK  S+     +F+ M  KD+VSW  ++ G A +G   +AL LF  ++ EG   D  
Sbjct: 462 DMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVM 521

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
               +L AC+    I   V+  +S     G+   V   G ++D+ G  G +  A R+ + 
Sbjct: 522 MISSILLACSGLKLIS-SVKEIHSYIIRKGLSDLVLQNG-IVDVYGECGNVDYAARMFEL 579

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDC--LIRLKGSDPGNYTMLS 521
           +  + + + W +++ +C  HN   LA E L+   L++  G +P + +++S
Sbjct: 580 IEFK-DVVSWTSMI-SCYVHNG--LANEALELFHLMKETGVEPDSISLVS 625



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 136/471 (28%), Positives = 230/471 (48%), Gaps = 30/471 (6%)

Query: 85  TLIRACVQNSLNAQAFRVFLDM---QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA-L 140
           +L   C + S+N +AF+   D+   Q    F+ +  Y  +L+ C  K      Q +HA +
Sbjct: 82  SLREICKRGSVN-EAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHM 140

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I     F  +F+   L+  Y KCG +    A+KLF  M  + I +WN+MI   V  GE  
Sbjct: 141 ITSNALFNSVFLSTRLVFMYGKCGCL--VDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPL 198

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMV 252
            +  L+ EM       DA ++  IL       +     E+         VS     +++V
Sbjct: 199 GSLELYREMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIV 258

Query: 253 WGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
             Y+K  D+  A+ LFDRMP K  +V W  +IS Y+  G + EA RL+ +M++A L P+ 
Sbjct: 259 GMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNT 318

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            T ++ L AC +S  +  GM +HA++ K  +  N  V NAL+ MYA+ G +  A ++F  
Sbjct: 319 YTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYN 378

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M   D +SWN+ML G   +G   +AL  +  M+D G  PD    + ++ A   +G    G
Sbjct: 379 MDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNG 438

Query: 432 VQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           +Q + Y+M+   G+   ++    ++D+  +   +K    +   MP + + + W T++   
Sbjct: 439 MQIHAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAGH 495

Query: 491 RKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
            ++     A+EL  EV     +L+G D  +  M+S+I  A      +++V+
Sbjct: 496 AQNGSHSRALELFREV-----QLEGIDL-DVMMISSILLACSGLKLISSVK 540



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 234/453 (51%), Gaps = 14/453 (3%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE 108
           ++A  ++     C  +  A ++F+ + +  DV  +N++I A   N  + +A R+F +MQ+
Sbjct: 252 FVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQK 311

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
             +  + +T+   L+AC   ++      IHA + K  Y+ ++FV N+LI  Y++ G +G 
Sbjct: 312 ASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGE 371

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
             A  +F +M + D +SWNSM++G V+ G   EA + + EM +     D V+  +I+   
Sbjct: 372 --AANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAAS 429

Query: 225 AKAGE----MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           A++G     M +     +     ++   +++V  Y+K   M+    +FD+MP K +V WT
Sbjct: 430 ARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWT 489

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            II+G+A+ G    A  L+ +++  G+  D   + SIL AC+   L+    ++H+ I + 
Sbjct: 490 TIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK 549

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
               +  + N +VD+Y +CG++D A  +F  +  KD+VSW +M+     +G   +AL LF
Sbjct: 550 GLS-DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELF 608

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
             MK+ G  PD  + V +L A      + KG +    + R  G + +      ++D+  R
Sbjct: 609 HLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYAR 667

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            G L+++ R V +     + ++W +++ A   H
Sbjct: 668 CGTLEKS-RNVFNFIRNKDLVLWTSMINAYGMH 699


>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 490

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 287/546 (52%), Gaps = 66/546 (12%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S +++  + L  LH  K      Q+ A  ++  L     I    +S      Q+  A  +
Sbjct: 4   SLQKIESKILHLLHNTKTQTHLPQIHAHFLRHGLHHSNQILSHFVSVCTSLHQIPYATTI 63

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNW 130
           FN    P++ L+N++I+A        Q+F  F  M+    +  DNFT+P LLKA +    
Sbjct: 64  FNHTHHPNILLFNSIIKAHSSFPPFHQSFHFFNLMKMTHNILPDNFTFPPLLKATSYLRD 123

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           + L Q +HA +   G++    V   L++ YS CG                          
Sbjct: 124 YDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCG-------------------------- 157

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                  ++ +A ++FDEM  R+ V WN +++G+ K G++ +  +LF+++  R++VSW+ 
Sbjct: 158 -------KMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNL 210

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M                               IS  A++    EA  ++ +M E G +PD
Sbjct: 211 M-------------------------------ISCLAQRKKDGEAFGIFREMLEQGFEPD 239

Query: 311 DGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D TL+++L  CA  G +  G  +H+  + K   +   +V N+LVD Y KCG+L+ A  VF
Sbjct: 240 DATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVISVGNSLVDFYCKCGNLEAAWKVF 299

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           N MTKK++VSWNAM+ GL ++G+GE  + LF +M  +G  P   TFVGVL  C HAGF+D
Sbjct: 300 NEMTKKNVVSWNAMISGLGLNGKGELGVELFEKMARKGVTPSDSTFVGVLACCAHAGFVD 359

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           KG + F SM   + + P++EHYGC++DLLGR G +KEA  L+++MP+ PNA +WG LL A
Sbjct: 360 KGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHVKEAYDLIRNMPLMPNAALWGALLSA 419

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           CR H   E+AE     L+RL+  + GNY +LSN++A    WN+V  VR+ M+    +K  
Sbjct: 420 CRTHGDREVAEIAAKELVRLEPGNSGNYVLLSNVYAEERKWNEVEKVRVLMQGVGIKKNP 479

Query: 550 GASSVE 555
           G S+++
Sbjct: 480 GQSALQ 485


>gi|15221713|ref|NP_174428.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169458|sp|Q9C866.1|PPR65_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31430
 gi|12322531|gb|AAG51260.1|AC027135_1 PPR-repeat protein [Arabidopsis thaliana]
 gi|332193234|gb|AEE31355.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 570

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 179/551 (32%), Positives = 298/551 (54%), Gaps = 46/551 (8%)

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           +Q P + +YN ++++        +   +F +++ +G++ DNFT P +LK+          
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + +H    K G   D +V NSL+  Y+  G   + +  K+F  M +RD+VSWN +I+  V
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYASLG--KIEITHKVFDEMPQRDVVSWNGLISSYV 123

Query: 195 KGGELSEARRLFDEMPERDAVSW------------------------------------- 217
             G   +A  +F  M +   + +                                     
Sbjct: 124 GNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVR 183

Query: 218 --NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
             N ++D + K G ++ A  +F+ +  +N+  W++MV+GY   G ++ A++LF+R P K 
Sbjct: 184 IGNALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKD 243

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V WT +++GY +     EA  L+  M+ AG++PD+  L+S+L  CA++G L  G  +H 
Sbjct: 244 VVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHG 303

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            IN+ R   +  V  ALVDMYAKCG ++ A+ VF  + ++D  SW +++YGLAM+G   +
Sbjct: 304 YINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGR 363

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           AL L+  M++ G   D  TFV VL AC H GF+ +G + F+SM   + + P+ EH  C+I
Sbjct: 364 ALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLI 423

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAI---IWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           DLL R+G L EA  L+  M  E +     ++ +LL A R +  V++AE V + L +++ S
Sbjct: 424 DLLCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVS 483

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL--H 570
           D   +T+L++++A+   W  V NVR +MK    +K  G SS+E+D   HEF V D L  H
Sbjct: 484 DSSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSH 543

Query: 571 PKSEQIYQMIN 581
           PK ++I  M++
Sbjct: 544 PKMDEINSMLH 554



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 179/393 (45%), Gaps = 44/393 (11%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+++ + + + + +++    +K  L+ D Y++  L+   A   ++ +  KVF+++   DV
Sbjct: 53  LKSIGRLRKVIEGEKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDV 112

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
             +N LI + V N     A  VF  M QE  +  D  T    L AC+      + + I+ 
Sbjct: 113 VSWNGLISSYVGNGRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYR 172

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            +    +   + + N+L+D + KCG   +  A+ +F SM ++++  W SM+ G V  G +
Sbjct: 173 FVVT-EFEMSVRIGNALVDMFCKCGC--LDKARAVFDSMRDKNVKCWTSMVFGYVSTGRI 229

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-------------- 245
            EAR LF+  P +D V W  +++GY +    + A ELF  +    I              
Sbjct: 230 DEARVLFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGC 289

Query: 246 -------------------------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
                                    V  + +V  Y+K G +E A  +F  +  +    WT
Sbjct: 290 AQTGALEQGKWIHGYINENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWT 349

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV-HASINK 339
            +I G A  GM+  A  LY +ME  G++ D  T +++L AC   G +  G K+ H+   +
Sbjct: 350 SLIYGLAMNGMSGRALDLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTER 409

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           +  +  +  C+ L+D+  + G LD A  + + M
Sbjct: 410 HNVQPKSEHCSCLIDLLCRAGLLDEAEELIDKM 442


>gi|413952592|gb|AFW85241.1| hypothetical protein ZEAMMB73_384525 [Zea mays]
          Length = 683

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 191/588 (32%), Positives = 310/588 (52%), Gaps = 49/588 (8%)

Query: 47  RDPYIAPKLISSLALCRQ---MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           RD      L+S+ A   Q   +  A ++F ++   D   ++TL+ A  +  L  +A R+F
Sbjct: 96  RDIISWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLF 155

Query: 104 LDMQEKG------VFTDNFTYPFLLKACN------GKNWFHLVQMIHALIY--KCGYFGD 149
            +M  +       + T  F    + KA N       K+   L  M+   I   +     D
Sbjct: 156 DEMPHRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADD 215

Query: 150 IFVP--------------NSLIDSYSKCGVVGVSLAKKLFMSMG--------------ER 181
           +                 N+LI +Y + G   V+ A++LF  +               ER
Sbjct: 216 LLTKRLTVMDMDKAVGAFNTLIAAYGQTG--RVTDARRLFSMIPKTQNQHKGHKRMVFER 273

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           ++VSWNSM+   ++ G++  AR LFDEMP +D VSWNT++ GY +A EM  A +LF ++P
Sbjct: 274 NVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVSWNTMIAGYTQASEMEEAEKLFWEVP 333

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             + V+W+ M+ G+++ GD+E A+  FDRMP ++ + W  +ISGY +        +L+ +
Sbjct: 334 DPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERSTITWNTMISGYEQNEDYDSTIKLFQR 393

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M E G +PD  TL S+LAACA   +L LG ++H  I K  F  +T   NAL+ MY++CG 
Sbjct: 394 MLEVGERPDHHTLSSVLAACASLAMLRLGAQLHQLIEK-SFLPDTATNNALMTMYSRCGE 452

Query: 362 LDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           L +A ++F  M T++D+VSWNA++ G    G   +AL LF  M+     P   TF+ +L 
Sbjct: 453 LISAKAIFGHMHTQRDIVSWNALIGGYEQQGNATEALRLFEEMRSAKVMPTHITFISLLS 512

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC +AG + +G   F++M  DYG+   VEHY  +++L+GR G+L++AL L++SMP+ P+ 
Sbjct: 513 ACGNAGLVSEGRVVFHTMVHDYGLAASVEHYAALVNLIGRHGQLEDALELIKSMPIAPDR 572

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            +WG  LGAC       LAE   + L ++       Y ++ N+ A  G W   + VR  M
Sbjct: 573 AVWGAFLGACTAKKNEPLAEMAANALSKIDPDSSAPYVLMHNLHAHEGRWGSASLVREDM 632

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           ++    K  G S +++ ++VH F   D  HP + +I+ ++    +  +
Sbjct: 633 ERLGIHKHPGYSWIDLHDKVHVFISGDTSHPLTHEIFSVLECFNRSCR 680



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/421 (26%), Positives = 180/421 (42%), Gaps = 81/421 (19%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG---GELSEARRLFDEMP 210
           NSL+ + S+     V  A+  F +M  RDI+SWN++++   +     +L+ ARRLF EMP
Sbjct: 71  NSLLAALSRGS--DVRAARCFFDAMPVRDIISWNTLLSAYARSLQPNDLAAARRLFYEMP 128

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           +RDAVSW+T+L  Y + G M  A  LF+++PHRN  SW+TM+ G+   G M  A  +F  
Sbjct: 129 QRDAVSWSTLLGAYTRRGLMEEAQRLFDEMPHRNASSWNTMITGFFAVGQMRKALNVFAA 188

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLY-DQMEEAGLKPDDGTLISILAACAESGLLGL 329
           MP K     + ++SG+   G   EA  L   ++    +    G   +++AA  ++G +  
Sbjct: 189 MPDKDSASLSAMVSGFIRNGRLHEADDLLTKRLTVMDMDKAVGAFNTLIAAYGQTGRVTD 248

Query: 330 GMKVHASINKYR----------FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
             ++ + I K +          F+ N    N+++  Y + G + +A ++F+ M  KDLVS
Sbjct: 249 ARRLFSMIPKTQNQHKGHKRMVFERNVVSWNSMMMCYIRTGDVCSARALFDEMPHKDLVS 308

Query: 380 WNA-------------------------------MLYGLAMHGQGEKALGLFSRMKDE-- 406
           WN                                M+ G    G  E A G F RM +   
Sbjct: 309 WNTMIAGYTQASEMEEAEKLFWEVPDPDAVTWNLMIRGFTQKGDVEHARGFFDRMPERST 368

Query: 407 -----------------------------GFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
                                        G  PD +T   VL AC     +  G Q    
Sbjct: 369 ITWNTMISGYEQNEDYDSTIKLFQRMLEVGERPDHHTLSSVLAACASLAMLRLGAQLHQL 428

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH-NAV 496
           +E+ +  LP       ++ +  R G L  A  +   M  + + + W  L+G   +  NA 
Sbjct: 429 IEKSF--LPDTATNNALMTMYSRCGELISAKAIFGHMHTQRDIVSWNALIGGYEQQGNAT 486

Query: 497 E 497
           E
Sbjct: 487 E 487



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/385 (22%), Positives = 168/385 (43%), Gaps = 57/385 (14%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N  + GL++ G  S ARRLFD +P R  V+WN++L   ++  ++  A   F+ +P R+I+
Sbjct: 40  NRSLVGLLRRGRFSAARRLFDALPARSVVTWNSLLAALSRGSDVRAARCFFDAMPVRDII 99

Query: 247 SWSTMVWGYSKD---GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           SW+T++  Y++     D+  A+ LF  MP +  V W+ ++  Y  +G+ +EA RL+D+M 
Sbjct: 100 SWNTLLSAYARSLQPNDLAAARRLFYEMPQRDAVSWSTLLGAYTRRGLMEEAQRLFDEMP 159

Query: 304 EAGLKPDDGTL------------ISILAACAESGLLGLGMKVHASINKYRFKCNTNVC-- 349
                  +  +            +++ AA  +     L   V   I   R     ++   
Sbjct: 160 HRNASSWNTMITGFFAVGQMRKALNVFAAMPDKDSASLSAMVSGFIRNGRLHEADDLLTK 219

Query: 350 --------------NALVDMYAKCGSLDNAMSVFNGMTK--------------KDLVSWN 381
                         N L+  Y + G + +A  +F+ + K              +++VSWN
Sbjct: 220 RLTVMDMDKAVGAFNTLIAAYGQTGRVTDARRLFSMIPKTQNQHKGHKRMVFERNVVSWN 279

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+      G    A  LF  M  +    D  ++  ++   T A  +++  + F+ +   
Sbjct: 280 SMMMCYIRTGDVCSARALFDEMPHK----DLVSWNTMIAGYTQASEMEEAEKLFWEVPD- 334

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
               P    +  MI    + G ++ A      MP E + I W T++    ++   +   +
Sbjct: 335 ----PDAVTWNLMIRGFTQKGDVEHARGFFDRMP-ERSTITWNTMISGYEQNEDYDSTIK 389

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAA 526
           +   ++ + G  P ++T LS++ AA
Sbjct: 390 LFQRMLEV-GERPDHHT-LSSVLAA 412


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/567 (33%), Positives = 313/567 (55%), Gaps = 15/567 (2%)

Query: 39  QIIKLDLQR----DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           +II+  ++R      Y+   +++ L     +  A KVF+ + + DV  +N++I   VQ  
Sbjct: 166 EIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKG 225

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           L  ++ ++FL+M   G+     T   LLKAC       +    H+ +   G   D+FV  
Sbjct: 226 LFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLT 285

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           SL+D YS  G  G   A  +F SM  R ++SWN+MI+G V+ G + E+  LF  + +   
Sbjct: 286 SLVDMYSNLGDTGS--AALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343

Query: 213 --DAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
             D+ +  +++ G ++  ++     L   +  K    ++V  + +V  YSK G ++ A +
Sbjct: 344 GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATI 403

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F RM  K ++ WT ++ G ++ G A++A +L+ QM+E  +  +  TL+S++  CA  G 
Sbjct: 404 VFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGS 463

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG-MTKKDLVSWNAMLY 385
           L  G  VHA   ++ +  +  + +AL+DMYAKCG + +A  +FN     KD++  N+M+ 
Sbjct: 464 LTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIM 523

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G  MHG G  ALG++SRM +E   P++ TFV +L AC+H+G +++G   F+SMERD+ + 
Sbjct: 524 GYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVR 583

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           PQ +HY C++DL  R+GRL+EA  LV+ MP +P+  +   LL  CR H    +  ++ D 
Sbjct: 584 PQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADR 643

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           LI L   + G Y MLSNI+A    W  V  +R  M+    +K  G S +EV N+V+ F  
Sbjct: 644 LISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFA 703

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D  HP    IYQ++  L  +++  G+
Sbjct: 704 SDDSHPSWADIYQLLENLRLEVEAEGY 730



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/476 (29%), Positives = 246/476 (51%), Gaps = 25/476 (5%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKN-LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           +AP+ FS           LH+  N L   K + AQIIK  +  + ++A KLI   +    
Sbjct: 44  QAPSVFSSL---------LHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGF 94

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +G A  VF+    P+  + N +I   ++N  + +  R+F  M    +  +++T  F LKA
Sbjct: 95  LGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKA 154

Query: 125 CNGKNWFHL-VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           C       + +++I A + + G+   ++V +S+++   K G   ++ A+K+F  M E+D+
Sbjct: 155 CTDLLDDEVGMEIIRAAVRR-GFHLHLYVGSSMVNFLVKRGY--LADAQKVFDGMPEKDV 211

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTIL-----DGYAKAGEMNLAF 234
           V WNS+I G V+ G   E+ ++F EM         V+   +L      G  K G    ++
Sbjct: 212 VCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSY 271

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            L   + + ++   +++V  YS  GD   A L+FD M +++L+ W  +ISGY + GM  E
Sbjct: 272 VLALGMGN-DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPE 330

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           +  L+ ++ ++G   D GTL+S++  C+++  L  G  +H+ I +   + +  +  A+VD
Sbjct: 331 SYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVD 390

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY+KCG++  A  VF  M KK++++W AML GL+ +G  E AL LF +M++E    +  T
Sbjct: 391 MYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVT 450

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
            V ++  C H G + KG        R +G          +ID+  + G++  A +L
Sbjct: 451 LVSLVHCCAHLGSLTKGRTVHAHFIR-HGYAFDAVITSALIDMYAKCGKIHSAEKL 505



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 172/363 (47%), Gaps = 14/363 (3%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           V+ IHA I K     + F+   LI  YS  G +G   A+ +F      +    N+MIAG 
Sbjct: 63  VKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLG--HARNVFDQCSLPETAVCNAMIAGF 120

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL-----AFELFEKIP----HRN 244
           ++  +  E  RLF  M   D +  N+    +A     +L       E+         H +
Sbjct: 121 LRNQQHMEVPRLFRMMGSCD-IEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLH 179

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           +   S+MV    K G +  A+ +FD MP K +V W  II GY +KG+  E+ +++ +M  
Sbjct: 180 LYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIG 239

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            GL+P   T+ ++L AC +SGL  +GM  H+ +       +  V  +LVDMY+  G   +
Sbjct: 240 GGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGS 299

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  VF+ M  + L+SWNAM+ G   +G   ++  LF R+   G G D  T V ++  C+ 
Sbjct: 300 AALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQ 359

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
              ++ G +  +S      +   +     ++D+  + G +K+A  +   M  + N I W 
Sbjct: 360 TSDLENG-RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWT 417

Query: 485 TLL 487
            +L
Sbjct: 418 AML 420



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/257 (23%), Positives = 117/257 (45%), Gaps = 12/257 (4%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           +  +L   + L + II+ +L+    ++  ++   + C  +  A  VF  +   +V  +  
Sbjct: 359 QTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTA 418

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           ++    QN     A ++F  MQE+ V  ++ T   L+  C         + +HA   + G
Sbjct: 419 MLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHG 478

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS-MGERDIVSWNSMIAGLVKGGE----LS 200
           Y  D  + ++LID Y+KCG   +  A+KLF +    +D++  NSMI G    G     L 
Sbjct: 479 YAFDAVITSALIDMYAKCG--KIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALG 536

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-----SWSTMVWGY 255
              R+ +E  + +  ++ ++L   + +G +     LF  +   + V      ++ +V  +
Sbjct: 537 VYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLH 596

Query: 256 SKDGDMEMAKLLFDRMP 272
           S+ G +E A  L  +MP
Sbjct: 597 SRAGRLEEADELVKQMP 613


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 156/351 (44%), Positives = 228/351 (64%), Gaps = 1/351 (0%)

Query: 244 NIVSWSTMVWGYSK-DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
           +I   +TMV  Y    G ME A+ LFD MP    V WT +I GYA  G +  A  L+ +M
Sbjct: 143 DIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKM 202

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           + AG+ PDD T++S+L+AC + G L LG  + + I K R      + NALVDM+AKCG +
Sbjct: 203 QIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDV 262

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           D A+ +F  M+K+ +VSW +++ GLAMHG+G +A+ LF  MK  G  P+   F+G+L AC
Sbjct: 263 DKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSAC 322

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H+G +++G QYF  M R +GI+P++EHYGCM+DLL R+G + EAL  V+ MP+EPN II
Sbjct: 323 SHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPII 382

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           W TL+ ACR H  ++L E +   LIR +     NY +LSNI+    DW K + +R+ M K
Sbjct: 383 WRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGK 442

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
              QK  G++ +E+DNE+HEF V D+ H +  +I +M+N +G+++K  G+A
Sbjct: 443 KGIQKVPGSTMIELDNEIHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYA 493



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 190/386 (49%), Gaps = 15/386 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-- 78
           L  L  C  L +  QL   IIKL  Q +P +  K  S+ +    +  A+ +   ++D   
Sbjct: 11  LDILQACNTLPKLAQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARV 70

Query: 79  -DVHLYNTLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
            D  L++T+IRA  ++S +   A   +  M   G+  + + +PF+LKAC G    +L + 
Sbjct: 71  YDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKA 130

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H  + K G+  DIFV N+++  Y  C   G+  A+KLF  M + D V+W +MI G  + 
Sbjct: 131 VHGSLVKFGFDDDIFVQNTMVHMYCCCS-GGMEFARKLFDEMPKLDPVTWTAMIGGYARL 189

Query: 197 GELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW---- 248
           G+ + A  LF +M       D V+  ++L      G + L   +   I    ++      
Sbjct: 190 GQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELS 249

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + +V  ++K GD++ A  LF  M  +T+V WT +I G A  G   EA  L+++M+ +G+ 
Sbjct: 250 NALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMV 309

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           P+D   I +L+AC+ SGL+  G +  + + + +           +VD+ ++ G +  A+ 
Sbjct: 310 PEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALE 369

Query: 368 VFNGM-TKKDLVSWNAMLYGLAMHGQ 392
               M  + + + W  ++    +HG+
Sbjct: 370 FVERMPIEPNPIIWRTLISACRVHGE 395


>gi|357477477|ref|XP_003609024.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510079|gb|AES91221.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 544

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 195/562 (34%), Positives = 297/562 (52%), Gaps = 66/562 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFND----IQD 77
           L+K  ++++ KQL A I K  L     +  KLI  S+L+    +  A  +F      I +
Sbjct: 13  LNKLSSMSELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLFQHSSILIHN 72

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM- 136
           P +   NT+IRA   +    QA  ++  M    V +D++T  F+LKAC+    + L+Q  
Sbjct: 73  PFIS--NTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRA--YKLIQES 128

Query: 137 -------------------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
                              IH  + K G+  D  V NSL+  YS+CG+V V         
Sbjct: 129 GSCDDDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSV--------- 179

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
                                   AR LFD++ +   VSWN ++  Y +  +  LA  L 
Sbjct: 180 ------------------------ARYLFDQIKDTSLVSWNIMISAYDRVDDYELADHLL 215

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           E +P + ++SW+T++  Y + GD++ A+ +F  MP +  V W  +I+G         A  
Sbjct: 216 ELMPCKTVISWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALE 275

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L+ +M+ AG+KP + TLISIL ACAE+G L +G K++ S+     K  + + NALV+MY 
Sbjct: 276 LFSEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYC 335

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG---PDKYT 414
           KCG+L  A  +FNGM  K +  WNAM+ GLA+HG  E+   LF+ M++   G   PD+ T
Sbjct: 336 KCGNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVT 395

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F+GVL AC+H G +DK   YF  M + Y I+P  +HYGCM+DLL R G L+EA +++ + 
Sbjct: 396 FIGVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLTRRGLLEEAYQIIMTA 455

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P + + ++W TLLGACR  +  ELAE     L +LK    G+Y +LSNI+A  G W++V 
Sbjct: 456 PFQNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVE 515

Query: 535 NVRLQMKKTRAQKPSGASSVEV 556
            +R +M      + +G S + +
Sbjct: 516 RLRSEMDYLHVPRQAGYSQINM 537


>gi|297830850|ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329147|gb|EFH59566.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 523

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/515 (37%), Positives = 293/515 (56%), Gaps = 44/515 (8%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK-NWFHLVQMI 137
           + H+ N LI+  +      QA  ++  ++ +GV+   +  P +LKAC        L +++
Sbjct: 11  EFHVSN-LIKNHISRGSPIQALVLYGGIRRRGVYFPGWV-PLILKACACVVPRVVLGKLL 68

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H+   K G   D+ V +SLI  Y K G V VS A+K+F  M ER++ +WN+MI G +  G
Sbjct: 69  HSESIKFGVCSDVMVGSSLISMYGKWGCV-VS-ARKVFDEMPERNVATWNAMIGGYMGNG 126

Query: 198 ELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEK----------------- 239
           +   A  LF+E+   R+ V+W  ++ GY K  E+  A ELFE+                 
Sbjct: 127 DAVSASGLFEEISVCRNTVTWIEMMKGYGKRKEIEKARELFERMPFELKNVKAWSVMLGV 186

Query: 240 ----------------IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                           IP +N   WS M+ GY + GD+  A  +F R+ A+ LV W  +I
Sbjct: 187 YVSHRKMEDARKFFEDIPEKNSFVWSLMISGYFRIGDVHEATSVFYRVFARDLVIWNTLI 246

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           +GYA+ G + +A   +  M+  G +PD  T+ S+L+ACA+SG L +G +VH+ IN+   +
Sbjct: 247 TGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIE 306

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            N  V NAL+DMYAKCG L+NA SVF  ++ + L  WN+M+  LA+HG+G +AL +F  M
Sbjct: 307 LNQFVSNALIDMYAKCGDLENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFRTM 366

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
                 PD+ TF+ VL AC H GF+ +G++ F  M +   + P V+H+GC+I LLGRSG+
Sbjct: 367 GSLDLKPDEITFLAVLTACVHGGFLMEGLKIFSEM-KTQDVKPNVKHFGCLIHLLGRSGK 425

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI---RLKGSDPGNY-TM 519
           LKEA RLV+ MPV+PN  + G LLGAC+ H   E+AE+V+  ++    +  SD  N+   
Sbjct: 426 LKEAYRLVREMPVKPNDTVLGALLGACKVHMDTEIAEQVMKIIVTVGSITNSDCENHLAS 485

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
           +SN++A T  W     +R++M+K   +K  G SSV
Sbjct: 486 ISNLYAHTERWETAEALRVEMEKRGLEKSPGLSSV 520



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 117/255 (45%), Gaps = 14/255 (5%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           + +   ++ F  I     +++ ++   +IS       +  A  VF  +   D+ ++NTLI
Sbjct: 191 RKMEDARKFFEDIP----EKNSFVWSLMISGYFRIGDVHEATSVFYRVFARDLVIWNTLI 246

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               QN  +  A   F +MQ +G   D  T   +L AC       + + +H+LI + G  
Sbjct: 247 TGYAQNGYSGDAIDAFYNMQGEGYEPDAVTVSSVLSACAQSGRLDVGREVHSLINRKGIE 306

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            + FV N+LID Y+KCG   +  A  +F S+  R +  WNSMI+ L   G+ +EA  +F 
Sbjct: 307 LNQFVSNALIDMYAKCG--DLENATSVFESLSLRSLACWNSMISCLAIHGKGNEALEMFR 364

Query: 208 EMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDG 259
            M     + D +++  +L      G +    ++F ++  +    N+  +  ++    + G
Sbjct: 365 TMGSLDLKPDEITFLAVLTACVHGGFLMEGLKIFSEMKTQDVKPNVKHFGCLIHLLGRSG 424

Query: 260 DMEMAKLLFDRMPAK 274
            ++ A  L   MP K
Sbjct: 425 KLKEAYRLVREMPVK 439


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 178/556 (32%), Positives = 314/556 (56%), Gaps = 12/556 (2%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  +  ++I+  ++C     +  VF+ ++  ++  +N ++ A  +N L   A  +F ++ 
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 108 EKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
                  DNFT P ++KAC G     L Q+IH +  K     D+FV N+LI  Y KCG+V
Sbjct: 200 SVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
             ++ K++F  M  + + SWN+++ G  +  +  +A  L+ +M +     D  +  ++L 
Sbjct: 260 EEAV-KRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLL 318

Query: 223 GYAKA-----GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             ++      GE    F L   +     +  S +   Y   G    A++LFD M  ++LV
Sbjct: 319 ACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSL-YICCGKPFAAQVLFDGMEHRSLV 377

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W ++I+GY++ G+  EA  L+ QM   G++P +  ++ +  AC++   L LG ++H   
Sbjct: 378 SWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFA 437

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K     +  V ++++DMYAK G +  +  +F+ + +KD+ SWN ++ G  +HG+G++AL
Sbjct: 438 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 497

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF +M   G  PD +TF G+L AC+HAG ++ G++YF  M   + I P++EHY C++D+
Sbjct: 498 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 557

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+GR+ +ALRL++ MP +P++ IW +LL +CR H  + L E+V + L+ L+   P NY
Sbjct: 558 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENY 617

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            ++SN+FA +G W+ V  VR +MK    QK +G S +EV  +VH F + D++ P+ E++ 
Sbjct: 618 VLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVR 677

Query: 578 QMINTLGKDLKPVGHA 593
           +    L   +  +G+ 
Sbjct: 678 ETWRRLEVKISSIGYT 693



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 189/396 (47%), Gaps = 22/396 (5%)

Query: 42  KLDLQRDPYIAPKLISSLALCRQMGLAIK-VFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           K+DL  D ++   LI+    C  +  A+K VF+ +    V  +N L+    QNS   +A 
Sbjct: 236 KMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKAL 295

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
            ++L M + G+  D FT   LL AC+     H  + IH    + G   D F+  SL+  Y
Sbjct: 296 DLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLY 355

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDA 214
             CG      A+ LF  M  R +VSWN MIAG  + G   EA  LF +M      P   A
Sbjct: 356 ICCGKPFA--AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIA 413

Query: 215 VSWNTILDGYAKAGEMNLAFEL--FEKIPH--RNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           +    +    ++   + L  EL  F    H   +I   S+++  Y+K G + +++ +FDR
Sbjct: 414 IM--CVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDR 471

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           +  K +  W +II+GY   G  KEA  L+++M   GLKPDD T   IL AC+ +GL+  G
Sbjct: 472 LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDG 531

Query: 331 MK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLA 388
           ++  +  +N +  +        +VDM  + G +D+A+ +   M    D   W+++L    
Sbjct: 532 LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCR 591

Query: 389 MHGQ---GEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +HG    GEK       ++ E   P+ Y  +  L A
Sbjct: 592 IHGNLGLGEKVANKLLELEPE--KPENYVLISNLFA 625



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 143/330 (43%), Gaps = 39/330 (11%)

Query: 8   PTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL 67
           P WF+   LL        + K+L+  +++    ++  L  DP+I   L+S    C +   
Sbjct: 308 PDWFTIGSLL----LACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFA 363

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F+ ++   +  +N +I    QN L  +A  +F  M   G+         +  AC+ 
Sbjct: 364 AQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQ 423

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            +   L + +H    K     DIFV +S+ID Y+K G +G  L++++F  + E+D+ SWN
Sbjct: 424 LSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG--LSQRIFDRLREKDVASWN 481

Query: 188 SMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
            +IAG    G   EA  LF++M     + D  ++  IL   + AG +    E F ++ + 
Sbjct: 482 VIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNL 541

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           + +                             L  +T ++      G   +A RL ++M 
Sbjct: 542 HNIE--------------------------PKLEHYTCVVDMLGRAGRIDDALRLIEEMP 575

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKV 333
                PD     S+L++C   G LGLG KV
Sbjct: 576 G---DPDSRIWSSLLSSCRIHGNLGLGEKV 602



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 104/216 (48%), Gaps = 10/216 (4%)

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA-LVDMYAKCGSLDNAMSVFNGMTKK 375
           +L AC +   + +G ++H  ++     CN  V N  ++ MY+ CGS  ++  VF+ + +K
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGV-Q 433
           +L  WNA++     +   E A+ +FS +       PD +T   V+ AC  AG +D G+ Q
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQ 228

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
             + M     ++  V     +I + G+ G ++EA++ V  +        W  LL    ++
Sbjct: 229 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQN 288

Query: 494 NAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFAAT 527
           +      + LD  +++   G DP  +T+ S + A +
Sbjct: 289 SD---PRKALDLYLQMTDSGLDPDWFTIGSLLLACS 321


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/566 (34%), Positives = 313/566 (55%), Gaps = 11/566 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + A I+K +   D Y++  LI+  A C QM  A +VF  +   D   +NTL+   VQN
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM-IHALIYKCGYFGDIFV 152
            + + A   F DMQ+ G   D  +   ++ A +G++   L  M +HA   K G   ++ +
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAA-SGRSANLLAGMEVHAYAIKHGIDSNMHI 389

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG----GELSEARRLFDE 208
            NSLID Y KC  V        F  M E+D++SW ++IAG  +       L+  R++  E
Sbjct: 390 GNSLIDMYGKCCCV--KYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLE 447

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAK 265
             + D +   +IL   +      L  E+   +      +I+  + +V  Y +   ++ A+
Sbjct: 448 KMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDYAR 507

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F+ + +K +V WT +I+     G+A EA  L++ + E  ++PD  TL+S+L A A   
Sbjct: 508 HVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALS 567

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H  + +  F     + N+LVDMYA+CG+++NA ++FN + ++DL+ W +M+ 
Sbjct: 568 SLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMIN 627

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
              MHG G+ A+ LFS+M DE   PD  TF+ +L AC+H+G + +G Q+F  M+ +Y + 
Sbjct: 628 ANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYKLE 687

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P  EHY C++DLL RS  L+EA   V++MP+EP+A +W  LLGACR H+  +L E     
Sbjct: 688 PWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAAKK 747

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L++L   + GNY ++SN FAA G WN V  VR  MK  + +K  G S +EV+N++H F  
Sbjct: 748 LLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTFMA 807

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVG 591
            D+ HP+   IY  +    K LK  G
Sbjct: 808 RDKSHPQCNNIYLKLAQFTKLLKEKG 833



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 152/537 (28%), Positives = 254/537 (47%), Gaps = 19/537 (3%)

Query: 4   PIRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDP-YIAPKLISSLALC 62
           P+   T F  ++   + L+     K L Q +QL A  +K     D  ++  K +     C
Sbjct: 36  PLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKC 95

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
                A+KVF+ + +  +  +N +I ACV      +A  ++ +M+  GV  D FT+P +L
Sbjct: 96  GSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVL 155

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS--MGE 180
           KAC       L   IH +  KCGY G +FV N+LI  Y+KCG +G   A+ LF S  M +
Sbjct: 156 KACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGG--ARVLFDSGLMEK 213

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
            D VSWNS+I+  V  GE  EA  LF  M E    S         +A E     ++   I
Sbjct: 214 DDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI 273

Query: 241 --------PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
                      ++   + ++  Y+  G ME A+ +F  M  K  V W  ++SG  +  M 
Sbjct: 274 HAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMY 333

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
            +A   +  M+++G KPD  ++++++AA   S  L  GM+VHA   K+    N ++ N+L
Sbjct: 334 SDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSL 393

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           +DMY KC  +    S F  M +KDL+SW  ++ G A +     AL L  +++ E    D 
Sbjct: 394 IDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDP 453

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
                +L AC+     +K ++  +      G L  +     ++++ G    +  A  + +
Sbjct: 454 MMIGSILLACSGLK-SEKLIKEIHGYVLKGG-LADILIQNAIVNVYGELALVDYARHVFE 511

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVEL-AEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           S+    + + W +++  C  HN + + A E+ + LI     +P   T++S ++AA  
Sbjct: 512 SIN-SKDIVSWTSMITCC-VHNGLAIEALELFNSLIE-TNIEPDLITLVSVLYAAAA 565



 Score = 41.6 bits (96), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + K++   +I+     +  IA  L+   A C  M  A  +FN ++  D+ L+ ++I 
Sbjct: 568 SLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSMIN 627

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQ 135
           A   +     A  +F  M ++ V  D+ T+  LL AC+       GK  F +++
Sbjct: 628 ANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMK 681


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 200/636 (31%), Positives = 318/636 (50%), Gaps = 82/636 (12%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP--DVHLYNTLIRACVQNSL 95
           A + + D    P  A  L+++ A   ++  A   F+ +     D  L+N ++ A  + SL
Sbjct: 83  AALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASL 142

Query: 96  NAQAFRVFLDMQEKGVF-TDNFTYPFLLKACNGKNWF---HLVQMIHALIYKCGYFGDIF 151
            A A  VF  +   G    D++++  L+ A    +     H  Q+ H  + K G    + 
Sbjct: 143 AAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQL-HCSVLKSGAAAVLS 201

Query: 152 VPNSLIDSYSKCG--------------------------VVG------VSLAKKLFMSMG 179
           V N+LI  Y KC                           VVG      V+ A+ +F  + 
Sbjct: 202 VSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVD 261

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEM------------------------------ 209
            +  V WN+MI+G V+ G  ++A  LF  M                              
Sbjct: 262 GKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKS 321

Query: 210 -------------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
                        PE      N ++  Y+K G++ +A  +F+ +  +++VSW+T++ GY 
Sbjct: 322 VHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYI 381

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             G ++ A  +F  MP K  + W +++SGY   G++++A +L++QM    +KP D T   
Sbjct: 382 DSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAG 441

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
            +AAC E G L  G ++HA + +  F+ + +  NAL+ MYAKCG++++A  VF  M   D
Sbjct: 442 AIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLD 501

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            VSWNAM+  L  HG G +AL LF +M  EG  PD+ +F+ +L AC HAG +D+G  YF 
Sbjct: 502 SVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFE 561

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM+RD+GI P  +HY  +IDLLGRSGR+ EA  L+++MP EP   IW  +L  CR +  +
Sbjct: 562 SMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDM 621

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           E      D L R+     G Y +LSN ++A G W   A VR  M+    +K  G S +EV
Sbjct: 622 EFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEV 681

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +++H F V D  HP+++++YQ +  +G  ++ +G+
Sbjct: 682 GSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGY 717



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 37/220 (16%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   +QL A +++   +        L++  A C  +  A  VF  + + D   +N +I A
Sbjct: 452 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 511

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  +F  M  +G+  D  ++  +L ACN           HA +   G+   
Sbjct: 512 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN-----------HAGLVDEGF--- 557

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
                     Y +      S+ +   +S GE     +  +I  L + G + EAR L   M
Sbjct: 558 ---------HYFE------SMKRDFGISPGED---HYARLIDLLGRSGRIGEARDLIKTM 599

Query: 210 P-ERDAVSWNTILDGYAKAGEMNL----AFELFEKIPHRN 244
           P E     W  IL G    G+M      A +LF  IP  +
Sbjct: 600 PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 639


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/375 (40%), Positives = 248/375 (66%), Gaps = 2/375 (0%)

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++D YAK G++  A ++F+++P R++VS + M+  Y+K G++E A+ LFD M  + +V W
Sbjct: 167 LVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSW 226

Query: 280 TIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
            ++I GYA+ G   +A  L+ ++  E   KPD+ T+++ L+AC++ G L  G  +H  + 
Sbjct: 227 NVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVK 286

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
             R + N  VC  L+DMY+KCGSL+ A+ VFN   +KD+V+WNAM+ G AMHG  + AL 
Sbjct: 287 SSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALR 346

Query: 399 LFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
           LF+ M+   G  P   TF+G L AC HAG +++G++ F SM ++YGI P++EHYGC++ L
Sbjct: 347 LFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSL 406

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G+LK A   +++M ++ ++++W ++LG+C+ H    L +E+ + LI L   + G Y
Sbjct: 407 LGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIY 466

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A+ GD+  VA VR  MK+    K  G S++E++N+VHEF   D+ H KS++IY
Sbjct: 467 VLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIY 526

Query: 578 QMINTLGKDLKPVGH 592
            M+  + + +K  G+
Sbjct: 527 TMLRKISERIKSHGY 541



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/420 (30%), Positives = 206/420 (49%), Gaps = 53/420 (12%)

Query: 19  EKLQNL-HKCKNLNQTKQLFAQIIKLDL---QRDPYIAPKLISSLALCRQMGLAIKVFND 74
           EKL  L  K +++++  Q+ A I++ +L    R P +  KL  + A   ++  ++ +F+ 
Sbjct: 30  EKLAVLIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQ 89

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
             DPD+ L+   I     N L  QAF +++ +    +  + FT+  LLK+C+ K+     
Sbjct: 90  TIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSG---- 145

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           ++IH  + K G   D +V   L+D Y+K G   V  A+K+F  M ER +VS  +MI    
Sbjct: 146 KLIHTHVLKFGLGIDPYVATGLVDVYAKGG--DVVSAQKVFDRMPERSLVSSTAMITCYA 203

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-------PHR---- 243
           K G +  AR LFD M ERD VSWN ++DGYA+ G  N A  LF+K+       P      
Sbjct: 204 KQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVV 263

Query: 244 -----------------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
                                        N+   + ++  YSK G +E A L+F+  P K
Sbjct: 264 AALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRK 323

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEE-AGLKPDDGTLISILAACAESGLLGLGMKV 333
            +V W  +I+GYA  G +++A RL+++M+   GL+P D T I  L ACA +GL+  G+++
Sbjct: 324 DIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRI 383

Query: 334 HASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHG 391
             S+  +Y  K        LV +  + G L  A      M    D V W+++L    +HG
Sbjct: 384 FESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 134/304 (44%), Gaps = 38/304 (12%)

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y+  G +  +  LF +     L  +T  I+  +  G+  +A  LY Q+  + + P++ T
Sbjct: 73  AYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFT 132

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK--------------- 358
             S+L +C+       G  +H  + K+    +  V   LVD+YAK               
Sbjct: 133 FSSLLKSCSTKS----GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMP 188

Query: 359 ------------C----GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                       C    G+++ A ++F+ M ++D+VSWN M+ G A HG    AL LF +
Sbjct: 189 ERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 403 MKDEGF-GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +  EG   PD+ T V  L AC+  G ++ G ++ +   +   I   V+    +ID+  + 
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETG-RWIHVFVKSSRIRLNVKVCTGLIDMYSKC 307

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G L+EA+ +    P   + + W  ++     H   + A  + + +  + G  P + T + 
Sbjct: 308 GSLEEAVLVFNDTP-RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIG 366

Query: 522 NIFA 525
            + A
Sbjct: 367 TLQA 370



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 148/399 (37%), Gaps = 71/399 (17%)

Query: 18  EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           E    +L K  +    K +   ++K  L  DPY+A  L+   A    +  A KVF+ + +
Sbjct: 130 EFTFSSLLKSCSTKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPE 189

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLD-MQEKGVFT----------------------- 113
             + + +T +  C     N +A R   D M E+ + +                       
Sbjct: 190 RSL-VSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQK 248

Query: 114 ---------DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
                    D  T    L AC+        + IH  +       ++ V   LID YSKCG
Sbjct: 249 LLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCG 308

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-----ERDAVSWNT 219
              +  A  +F     +DIV+WN+MIAG    G   +A RLF+EM      +   +++  
Sbjct: 309 --SLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIG 366

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
            L   A AG +N    +FE           +M   Y     +E    L   +        
Sbjct: 367 TLQACAHAGLVNEGIRIFE-----------SMGQEYGIKPKIEHYGCLVSLL-------- 407

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
                     G A +  R Y+ ++   +  D     S+L +C   G   LG ++   +  
Sbjct: 408 ----------GRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIG 457

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
              K N+ +   L ++YA  G  +    V N M +K +V
Sbjct: 458 LNIK-NSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIV 495



 Score = 42.7 bits (99), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 331 MKVHASINKYRFKCNTN--VCN-ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
           +++HA+I ++    +    V N  L   YA  G + +++++F+     DL  + A +   
Sbjct: 46  LQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTA 105

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-THAGFIDKGVQYFYSMERDYGILP 446
           +++G  ++A  L+ ++      P+++TF  +L +C T +G     + + + ++   GI P
Sbjct: 106 SINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSG----KLIHTHVLKFGLGIDP 161

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC-RKHNAVELAEEVLDC 505
            V     ++D+  + G +  A ++   MP    +++  T +  C  K   VE A  + D 
Sbjct: 162 YVA--TGLVDVYAKGGDVVSAQKVFDRMP--ERSLVSSTAMITCYAKQGNVEAARALFDS 217

Query: 506 L 506
           +
Sbjct: 218 M 218


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/597 (32%), Positives = 323/597 (54%), Gaps = 15/597 (2%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S+R+ L + L+N  K    +Q  Q+ A  + +    D  +   LI     C ++ LA  V
Sbjct: 2   SERQRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSV 61

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           F+ + + +V  +  L+   +Q      +  +  +M   GV  + FT+   LKAC      
Sbjct: 62  FDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVV 121

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
                IH +  K G+     V N+ ID YSKCG +G  +A+++F  M  R++VSWN+MIA
Sbjct: 122 ENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIG--MAEQVFNKMPFRNLVSWNAMIA 179

Query: 192 GLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEK-------I 240
           G    G   ++  LF  M  +    D  ++ + L      G +    ++          I
Sbjct: 180 GHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPI 239

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
             RNI++ S +V  Y+K G +  A+ +FDR+  K L+ W+ +I G+A++G   EA  L+ 
Sbjct: 240 SIRNIIA-SAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFR 298

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           Q+ E+    D   L  ++   A+  L+  G ++H  I K     + +V N+++DMY KCG
Sbjct: 299 QLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCG 358

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
             + A  +F+ M  +++VSW  M+ G   HG GEKA+ LF+RM+ +G   D+  ++ +L 
Sbjct: 359 LTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLS 418

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC+H+G I +  +YF  +  ++ + P +EHY CM+D+LGR+G+LKEA  L+++M ++PN 
Sbjct: 419 ACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNE 478

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            IW TLL ACR H  +E+  EV + L R+   +P NY M+SNI+A  G W +   VR  +
Sbjct: 479 GIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLV 538

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK-PVGHAAKL 596
           K    +K +G S VE++ E+H F   D  HP +E+I++M+  + + +K  VG+A  L
Sbjct: 539 KAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGL 595


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/573 (33%), Positives = 312/573 (54%), Gaps = 6/573 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++ AQ +K   +   ++   L++  A C  +  A  VFN ++  D+  +NTL+  
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              N    +A ++F + +         TY  ++K C       L + +H+ + K G+   
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V  +L D+YSKCG +  +L     M+ G R++VSW ++I+G ++ G++  A  LF  M
Sbjct: 337 GNVMTALADAYSKCGELADAL-NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKI---PHRNIVSWST-MVWGYSKDGDMEMAK 265
            E   +          KA    L  ++  ++    +++I S  T ++  YSK G  E A 
Sbjct: 396 REDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGSTEDAL 455

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA-ES 324
            +F  +  K +V W+ ++S +A+ G  + A  L+++M   G+KP++ T+ S++ ACA  S
Sbjct: 456 SIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPS 515

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             +  G + HA   KYR+     V +ALV MY++ G++D+A  VF   T +DLVSWN+M+
Sbjct: 516 AGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMI 575

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A HG   KA+  F +M+  G   D  TF+ V+  CTH G + +G QYF SM RD+ I
Sbjct: 576 SGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKI 635

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P +EHY CM+DL  R+G+L E + L++ MP    A++W TLLGACR H  VEL +   D
Sbjct: 636 NPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSAD 695

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L+ L+  D   Y +LSNI+AA G W +   VR  M   + +K +G S +++ N+VH F 
Sbjct: 696 KLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFI 755

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             D+ HP S+QIY+ +  +   LK  G++   S
Sbjct: 756 AFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTS 788



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 194/420 (46%), Gaps = 41/420 (9%)

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGV 168
           GV  D+ T   +LKAC       L + +H L  KCG+  G++    SL+D Y KCG V  
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
            +  ++F  M ++++V+W S++ G       SE   LF  M       +  ++ ++L   
Sbjct: 154 GI--EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAV 211

Query: 225 AKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           A  G ++L   +  +        ++   ++++  Y+K G +E AK +F+ M  + +V W 
Sbjct: 212 ASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +++G        EA +L+ +      K    T  +++  CA    L L  ++H+ + K+
Sbjct: 272 TLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKH 331

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGL 399
            F    NV  AL D Y+KCG L +A+++F+  T  +++VSW A++ G   +G    A+ L
Sbjct: 332 GFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVL 391

Query: 400 FSRMKDEGFGPDKYTFVGVLCAC-------THAGFIDKGVQY--------------FYSM 438
           FSRM+++   P+++T+  +L A         HA  I    Q+              F S 
Sbjct: 392 FSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPSVGTALLASYSKFGST 451

Query: 439 ERDYGILPQVEH-----YGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGAC 490
           E    I   +E      +  M+    ++G  + A  L   M ++   PN     +++ AC
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 151/339 (44%), Gaps = 42/339 (12%)

Query: 202 ARRLFDEMPERDA-VSWNTILDGYAKAGEMNLAFELF----------------------E 238
           AR   DE+P RDA V  N +L  YA+ G +    + F                       
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 239 KIPHR------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
            +P R                   + + +++V  Y K G +     +F+ MP K +V WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +++G A   M  E   L+ +M   G+ P+  T  S+L+A A  G L LG +VHA   K+
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             + +  VCN+L++MYAKCG +++A SVFN M  +D+VSWN ++ GL ++    +AL LF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
              +       + T+  V+  C +   +    Q  +S    +G          + D   +
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSK 349

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            G L +AL +        N + W  ++  C ++  + LA
Sbjct: 350 CGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|449438554|ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g21090-like [Cucumis sativus]
          Length = 611

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 189/556 (33%), Positives = 285/556 (51%), Gaps = 75/556 (13%)

Query: 103 FLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSY 160
           +LD + ++GV      +  LL+ C    +F   + +H  +   G+      V N LI  Y
Sbjct: 49  YLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPTTIVANHLIGMY 108

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
            +CG      A+K+F  M  R++ SWN M+AG  K G+++ AR+LFD M E+D VSWNTI
Sbjct: 109 FECG--RDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTI 166

Query: 221 LDGYAKAGEMNLAFELFEKIPH-------------------------------------- 242
           +  YAK G  N A  L+                                           
Sbjct: 167 VLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGF 226

Query: 243 -RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N+V  S++V  Y+K G+M  A+ LFD M  K +  WT I+SGYA+ G    A+ L+ Q
Sbjct: 227 LSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQ 286

Query: 302 MEEA-------------------------------GLKPDDGTLISILAACAESGLLGLG 330
           M E                                G+ P+  T  S L ACA    L  G
Sbjct: 287 MPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHG 346

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAM 389
            +VH  + +  F+CNT V ++L+DMY+KCG L+ +  VF+ M  K+D+V WN M+  LA 
Sbjct: 347 KQVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQ 406

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           +G GEKA+ +F+ M + G  PD+ TF+ +L AC+H+G + +G+++F +M  D+G+ P  E
Sbjct: 407 NGHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQE 466

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY C+IDLLGR+G   E +  +++M  +P+  +W  LLG CR HN +EL  +V + +I L
Sbjct: 467 HYSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIEL 526

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           K      Y  L++++A  G W  V  VR  M +   +K  G S ++V N+ H F   D+L
Sbjct: 527 KPQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRL 586

Query: 570 HPKSEQIYQMINTLGK 585
           HP  E+IY ++  L +
Sbjct: 587 HPLKEEIYLLLEQLAR 602



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 189/397 (47%), Gaps = 58/397 (14%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           R+ Y    +++  A    +  A K+F+ + + DV  +NT++ A  +     +A  ++ D 
Sbjct: 127 RNLYSWNHMLAGYAKLGDVNNARKLFDRMMEKDVVSWNTIVLAYAKQGCFNEAIGLYRDF 186

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           +   +  + F++  +L  C       L + +H  +   G+  ++ + +S++D+Y+KCG  
Sbjct: 187 RRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFLSNLVLSSSIVDAYAKCG-- 244

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
            +  A+ LF  M  +DI +W ++++G  K G+++ A  LF +MPE++ VSW+ ++ GYA+
Sbjct: 245 EMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSALISGYAR 304

Query: 227 AGEMNLAFELFEKI------PHR---------------------------------NIVS 247
               + A + F K+      P +                                 N + 
Sbjct: 305 NSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTYFRCNTIV 364

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
            S+++  YSK G +E +  +F  M  K  +V W  +IS  A+ G  ++A ++++ M E+G
Sbjct: 365 VSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESG 424

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASI--------NKYRFKCNTNVCNALVDMYAK 358
           LKPD  T I IL+AC+ SGL+  G++   ++        ++  + C       L+D+  +
Sbjct: 425 LKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEHYSC-------LIDLLGR 477

Query: 359 CGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            G     ++    M+ K D   W+A+L    +H   E
Sbjct: 478 AGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIE 514



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 156/365 (42%), Gaps = 46/365 (12%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +   + LF ++    L +D +    ++S  A    M  A ++F+ + + +   ++ 
Sbjct: 242 KCGEMRCARTLFDEM----LVKDIHAWTTIVSGYAKWGDMNSASELFHQMPEKNPVSWSA 297

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    +NSL  +A   F  M + G+  + +T+   L AC         + +H  + +  
Sbjct: 298 LISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGKQVHGYLIRTY 357

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSEARR 204
           +  +  V +SLID YSKCG++  S    +F  MG ++D+V WN+MI+ L + G   +A +
Sbjct: 358 FRCNTIVVSSLIDMYSKCGMLEASCC--VFHLMGNKQDVVVWNTMISALAQNGHGEKAMQ 415

Query: 205 LFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           +F++M E     D +++  IL   + +G +      F+            M + +    D
Sbjct: 416 MFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFK-----------AMTYDHGVFPD 464

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            E    L D +                  G A     L +++E    KPDD    ++L  
Sbjct: 465 QEHYSCLIDLL------------------GRAGCFVELVNELENMSCKPDDRVWSALLGV 506

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL--- 377
           C     + LG KV   + + + + +     +L  +YA  G  ++   V   M +K +   
Sbjct: 507 CRIHNNIELGRKVAERVIELKPQSSAAYV-SLASLYAFLGKWESVEKVRELMDEKFIRKE 565

Query: 378 --VSW 380
             +SW
Sbjct: 566 RGISW 570



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 116/303 (38%), Gaps = 68/303 (22%)

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346
           + +G   EA    D++ + G++   G  + +L  CA++     G  VH  +    FK  T
Sbjct: 38  SSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPT 97

Query: 347 N-VCNALVDMYAKC-------------------------------GSLDNAMSVFNGMTK 374
             V N L+ MY +C                               G ++NA  +F+ M +
Sbjct: 98  TIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMME 157

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH---------- 424
           KD+VSWN ++   A  G   +A+GL+   +    G + ++F GVL  C            
Sbjct: 158 KDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQV 217

Query: 425 ------AGFIDKGV-------QYFYSMER-------DYGILPQVEHYGCMIDLLGRSGRL 464
                 AGF+   V        Y    E        D  ++  +  +  ++    + G +
Sbjct: 218 HGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDM 277

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSN 522
             A  L   MP E N + W  L+    +++   L  E LD   ++   G +P  YT  S 
Sbjct: 278 NSASELFHQMP-EKNPVSWSALISGYARNS---LGHEALDYFTKMMKFGINPEQYTFSSC 333

Query: 523 IFA 525
           + A
Sbjct: 334 LCA 336


>gi|297833170|ref|XP_002884467.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330307|gb|EFH60726.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 657

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 210/635 (33%), Positives = 339/635 (53%), Gaps = 60/635 (9%)

Query: 6   RAPTW--FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLAL 61
           +  TW      +L  + L  L  C + NQ KQ+ AQI++ +L    +   +LI  S++  
Sbjct: 20  KTTTWDPVQSLQLNHQSLVLLENCSSRNQFKQVLAQIMRFNLIGVTFPMSRLIFFSAITY 79

Query: 62  CRQMGLAIKVFNDIQ-DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
              + LA  +F D   +P+V +YNT+I A V +S N + F ++  M    V  D  T+  
Sbjct: 80  PENLDLAKLLFLDFTPNPNVFVYNTMISA-VSSSKN-ECFGLYSSMIRYRVSPDRQTFLH 137

Query: 121 LLKACNGKNWFHLVQMIHA--LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
           L+KA    ++   V+ IH   ++  C   G+ ++ NSL+  Y + G +G   A+K+F  M
Sbjct: 138 LMKA---SSFLSEVKQIHCHIIVSGCLSLGN-YLWNSLVKFYMELGSLG--FAEKVFAIM 191

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAV----------------- 215
            + D+ S+N MI G  K G   EA  L+ +M      P+   +                 
Sbjct: 192 PQPDVSSFNVMIVGYAKQGFGLEALELYYKMVSDGIEPDEYTLLGLLVCCGHLSDIRLGK 251

Query: 216 ---SW---------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
               W               N +LD Y K  E  LA   F+ +  +++ SW+TMV G+ +
Sbjct: 252 GVHGWIERRGPVYSSNLILRNALLDMYFKCKESGLAKRAFDALKKKDMRSWNTMVVGFVR 311

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR--LYDQMEEAGLKPDDGTLI 315
            GDME A+ +FD+MP + LV W  ++  Y++KG  + A R   Y+ +    +KPD  T++
Sbjct: 312 LGDMEAAQAVFDQMPQRDLVSWNSLLFCYSKKGCDQRAVRELFYEMLIVEKVKPDRVTMV 371

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+++  A +G L  G  VH  + + + + +  + +AL+DMY KCG ++ A  VF   T+K
Sbjct: 372 SLISGAANNGELSHGRWVHGLMIRLQLEGDAFLSSALIDMYCKCGLIERAFMVFKTATEK 431

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+  W +M+ G A HG G++AL LF RM++E   P+K T + VL AC+H+G +++G+  F
Sbjct: 432 DVPLWTSMITGFAFHGYGQQALQLFKRMQEEDVTPNKVTLLAVLTACSHSGLVEEGLHVF 491

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS-MPVEPNAIIWGTLLGACRKHN 494
           Y M+  +G  P+ EHYG ++DLL R+GRL+EA  +VQ+ MP+ P+  +WG++L ACR+  
Sbjct: 492 YHMKEKFGFHPETEHYGSLVDLLCRAGRLEEAKDIVQNKMPMRPSQSMWGSILSACREGE 551

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +E AE  L  L++L+    G Y +LSNI+A  G W      R  M+    +K +G SSV
Sbjct: 552 DIETAELALSELLKLEPEKEGGYVLLSNIYATVGRWGYSDKTREAMESRGVKKTAGYSSV 611

Query: 555 EVDNEVHEFSVCD-QLHPKSEQIYQMINTLGKDLK 588
                VH F   + Q HP+  +I +++  L  ++K
Sbjct: 612 VGVEGVHSFVAAEKQNHPRWTEIKRILQHLHNEMK 646


>gi|218184996|gb|EEC67423.1| hypothetical protein OsI_34621 [Oryza sativa Indica Group]
          Length = 799

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/617 (30%), Positives = 312/617 (50%), Gaps = 47/617 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L++    + L+   Q+ A  +K  L+ D      L+     CR +  A+  F  + + + 
Sbjct: 156 LKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNW 215

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             + + I  CVQN    +   +F++MQ  G+     +Y    ++C   +  +  + +HA 
Sbjct: 216 VSWGSAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAH 275

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV------ 194
             K  +  D  V  +++D Y+K     ++ A++ F  +    + + N+M+ GL       
Sbjct: 276 AIKNKFSSDRVVGTAIVDVYAKAN--SLTDARRAFFGLPNHTVETSNAMMVGLFMIRSSI 333

Query: 195 ---------------------------------------KGGELSEARRLFDEMPERDAV 215
                                                  K   L EA  +F  M ++D+V
Sbjct: 334 RFDVVSLSGVFSACAETKGYFPGQQVHCLAIKSVLDLYGKCKALMEAYLIFQGMKQKDSV 393

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
           SWN I+    + G  +     F ++   +    ST+V  Y K G ++ A+ L DR+  + 
Sbjct: 394 SWNAIIAALEQNGHYDDTILHFNEMLRFDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQ 453

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V W  I+SG++    ++ A + + +M + GLKPD  T  ++L  CA    + LG ++H 
Sbjct: 454 VVSWNAILSGFSLNKESEAAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 513

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            I K     +  + + LVDMYAKCG + +++ VF  + K+D VSWNAM+ G A+HG G +
Sbjct: 514 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVE 573

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455
           AL +F RM+ E   P+  TFV VL AC+H G  D G +YF+ M   Y + PQ+EH+ CM+
Sbjct: 574 ALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMV 633

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515
           D+LGRS   +EA++ + SMP + +A+IW TLL  C+    VE+AE     ++ L   D  
Sbjct: 634 DILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAELAASNVLLLDPDDSS 693

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQ 575
            Y +LSN++A +G W  V+  R  +K+ R +K  G S +E  +E+H F V D+ HP+S +
Sbjct: 694 VYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEAQSEMHGFLVGDKAHPRSGE 753

Query: 576 IYQMINTLGKDLKPVGH 592
           +Y+M+N L  ++K  G+
Sbjct: 754 LYEMLNDLIGEMKLSGY 770



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 154/319 (48%), Gaps = 32/319 (10%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N +L  YA+      A  +F+ +P R+ VSW+TM+  YS  GD+  A  LFD MP   +V
Sbjct: 56  NCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVV 115

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  ++SGY ++GM +E+  L+ +M   G+ PD  T   +L +C+    L LG++VHA  
Sbjct: 116 SWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALA 175

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K   + +    +ALVDMY KC SLD+A+  F GM +++ VSW + + G   + Q  + L
Sbjct: 176 VKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAGCVQNEQYVRGL 235

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF-------YSMERDYGILPQVEH 450
            LF  M+  G G  + ++     +C     ++ G Q         +S +R  G       
Sbjct: 236 ELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSDRVVGT------ 289

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
              ++D+  ++  L +A R    +P                 ++ VE +  ++  L  ++
Sbjct: 290 --AIVDVYAKANSLTDARRAFFGLP-----------------NHTVETSNAMMVGLFMIR 330

Query: 511 GSDPGNYTMLSNIFAATGD 529
            S   +   LS +F+A  +
Sbjct: 331 SSIRFDVVSLSGVFSACAE 349



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 163/388 (42%), Gaps = 68/388 (17%)

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G+    FV N L+  Y++    G + A+++F +M  RD VSWN+M+      G++S A  
Sbjct: 47  GFVPTAFVSNCLLQMYAR--CAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVA 104

Query: 205 LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--------------------- 243
           LFD MP+ D VSWN ++ GY + G    + +LF ++  R                     
Sbjct: 105 LFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEE 164

Query: 244 ------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
                             ++ + S +V  Y K   ++ A   F  MP +  V W   I+G
Sbjct: 165 LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGSAIAG 224

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
             +         L+ +M+  GL     +  S   +CA    L  G ++HA   K +F  +
Sbjct: 225 CVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCLNTGRQLHAHAIKNKFSSD 284

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             V  A+VD+YAK  SL +A   F G+    + + NAM+ GL M         + S ++ 
Sbjct: 285 RVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLFM---------IRSSIR- 334

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
                D  +  GV  AC       KG  YF   +     +  V      +DL G+   L 
Sbjct: 335 ----FDVVSLSGVFSACAET----KG--YFPGQQVHCLAIKSV------LDLYGKCKALM 378

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKH 493
           EA  + Q M  + +++ W  ++ A  ++
Sbjct: 379 EAYLIFQGMK-QKDSVSWNAIIAALEQN 405



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 91/224 (40%), Gaps = 35/224 (15%)

Query: 300 DQMEEAGLKPDDGTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           +Q +   + P   T   +  +CA++G   L  G   HA +    F     V N L+ MYA
Sbjct: 4   EQQQPPPVAPARVTFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYA 63

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD------------ 405
           +C     A  VF+ M ++D VSWN ML   +  G    A+ LF  M D            
Sbjct: 64  RCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSG 123

Query: 406 -------------------EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
                               G  PD+ TF  +L +C+    +  GVQ  +++    G+  
Sbjct: 124 YCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQ-VHALAVKTGLEI 182

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
            V     ++D+ G+   L +AL     MP E N + WG+ +  C
Sbjct: 183 DVRTGSALVDMYGKCRSLDDALCFFYGMP-ERNWVSWGSAIAGC 225


>gi|297605437|ref|NP_001057211.2| Os06g0228900 [Oryza sativa Japonica Group]
 gi|255676854|dbj|BAF19125.2| Os06g0228900 [Oryza sativa Japonica Group]
          Length = 695

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 186/561 (33%), Positives = 305/561 (54%), Gaps = 48/561 (8%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN------FT 117
            +  A ++F+++   DV  +NTL+ A  +  L  +A R+F +M ++   + N      F 
Sbjct: 80  HLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMPQRNAASWNTMVTGFFA 139

Query: 118 YPFLLKACN------GKNWFHLVQMIHALIYKCGYFGD-----------------IFVPN 154
              ++KA +       K+   L  M+     K G   +                 +   N
Sbjct: 140 AGQVVKALDVFDAMPAKDSASLSTMVSGFT-KNGMLHEAEELLTKRLSVTDMDKAVDAYN 198

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMG--------------ERDIVSWNSMIAGLVKGGELS 200
           +LI +Y + G    S AK+LF  +               ER++VSWNSM+   +K G++ 
Sbjct: 199 TLIVAYGQAG--RFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDVC 256

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            AR LF+EMP++D VSWNT++ GY +A +M  + +LF ++P  + VSW+ ++ G+ + G+
Sbjct: 257 SARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKGE 316

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            E A+  FDRMP +  + W  +ISGY + G    + +L+ +M E G  PD  T  S+LAA
Sbjct: 317 AEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAA 376

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
           CA   +LGLG ++H  + K  F  +T + NAL+ MY++CG+L++A ++F  M TKKDLVS
Sbjct: 377 CASIPMLGLGAQIHQLVEK-SFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLVS 435

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNA++     HG+  KAL LF  M+     P   TFV +L AC +AG + +G   F +M 
Sbjct: 436 WNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMV 495

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            +YGI+ ++EHY  +++L+GR G+L +AL ++ SMP+ P+  +WG  LGAC       LA
Sbjct: 496 HEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPLA 555

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           +     L  +       Y ++ N+ A  G W   A VR +M++    K  G S ++++ +
Sbjct: 556 QMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEGK 615

Query: 560 VHEFSVCDQLHPKSEQIYQMI 580
           +H F   D  HP +++I+ ++
Sbjct: 616 MHVFISGDTWHPNAQEIFSVL 636



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 114/414 (27%), Positives = 179/414 (43%), Gaps = 78/414 (18%)

Query: 173 KLFMSMGERDIVSWNSMIAGLVKG---GELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           + F +M  RD VSWN+++A          L+ ARRLFDEMP+RD V+WNT+L  YA+ G 
Sbjct: 52  EFFDAMPVRDAVSWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGL 111

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           M+ A  LF+++P RN  SW+TMV G+   G +  A  +FD MPAK     + ++SG+ + 
Sbjct: 112 MDEARRLFDEMPQRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKN 171

Query: 290 GMAKEAARLY-DQMEEAGLKPDDGTLISILAACAESG----------LLGLGMKVHASIN 338
           GM  EA  L   ++    +        +++ A  ++G          ++  G   H  + 
Sbjct: 172 GMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLK 231

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM--------------- 383
           +  F+ N    N+++  Y K G + +A ++FN M  KDLVSWN M               
Sbjct: 232 RKGFERNVVSWNSMMICYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEK 291

Query: 384 ----------------LYGLAMHGQGEKALGLFSRMKDEG-------------------- 407
                           + G    G+ E A G F RM + G                    
Sbjct: 292 LFWEMPDPDTVSWNLIIQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISS 351

Query: 408 ---FG--------PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
              F         PD++TF  VL AC     +  G Q    +E+ +  +P       +I 
Sbjct: 352 VKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKSF--VPDTAISNALIT 409

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           +  R G L +A  + + M  + + + W  L+G    H     A ++   + R K
Sbjct: 410 MYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAK 463



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 170/389 (43%), Gaps = 65/389 (16%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N  +A L++ G    ARRLFD +P R  V+WN++L G A+  +   A E F+ +P R+ V
Sbjct: 4   NRSLAALLRAGRYGAARRLFDALPARSVVTWNSLLAGLARRPDARAAREFFDAMPVRDAV 63

Query: 247 SWSTMVWGYSKD---GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           SW+T++  YS       +  A+ LFD MP + +V W  ++  YA +G+  EA RL+D+M 
Sbjct: 64  SWNTLLAAYSASPHPDHLAAARRLFDEMPQRDVVTWNTLLGAYARRGLMDEARRLFDEMP 123

Query: 304 E---------------------------AGLKPDDGTLISILAACAESGLLGLGMK-VHA 335
           +                           A    D  +L ++++   ++G+L    + +  
Sbjct: 124 QRNAASWNTMVTGFFAAGQVVKALDVFDAMPAKDSASLSTMVSGFTKNGMLHEAEELLTK 183

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--------------KDLVSWN 381
            ++        +  N L+  Y + G   +A  +F+ + K              +++VSWN
Sbjct: 184 RLSVTDMDKAVDAYNTLIVAYGQAGRFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWN 243

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +M+      G    A  LF+ M D+    D  ++  ++   T A  + +  + F+ M   
Sbjct: 244 SMMICYIKAGDVCSARALFNEMPDK----DLVSWNTMISGYTQASDMKESEKLFWEMPD- 298

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVE 497
               P    +  +I    + G  + A      MP E   I W T++    K+    ++V+
Sbjct: 299 ----PDTVSWNLIIQGFMQKGEAEHARGFFDRMP-ERGTISWNTMISGYEKNGNYISSVK 353

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           L  ++L+      G  P  +T  S++ AA
Sbjct: 354 LFSKMLEV-----GEIPDRHT-FSSVLAA 376


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/571 (33%), Positives = 307/571 (53%), Gaps = 10/571 (1%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           L A + KL    D ++   LI + ++   + +A  VF+DI   D+  +  ++    +N  
Sbjct: 158 LHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCF 217

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
             ++ ++F  M+  G   +NFT    LK+C G   F++ + +H    K  Y  D+FV  +
Sbjct: 218 YEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIA 277

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215
           L++ Y+K G   +  A++LF  M + D++ W+ MIA   +     EA  LF  M +   V
Sbjct: 278 LLELYAKSG--EIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVV 335

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMVWGYSKDGDMEMAKLL 267
             N       +A   +++ +L ++I         + N+   + ++  Y+K G++E +  L
Sbjct: 336 PNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKL 395

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F+ +P +  V W  II GY + G  + A  L+  M E  ++P + T  S+L A A    L
Sbjct: 396 FEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAAL 455

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G+++H+   K  +  +T V N+L+DMYAKCG +++A   F+ M K+D VSWNAM+ G 
Sbjct: 456 EPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGY 515

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           +MHG   +AL LF  M+     P+K TFVGVL AC++AG + KG  +F SM +DY I P 
Sbjct: 516 SMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPC 575

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           +EHY CM+ LLGR GR  EA++L+  +  +P+ ++W  LLGAC  H  V+L       ++
Sbjct: 576 IEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVL 635

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            ++  D   + +LSN++A  G W+ VA VR  M+K + +K  G S VE    VH FSV D
Sbjct: 636 EMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSVGD 695

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
             HP  + I  M+  L K  +  G+    +A
Sbjct: 696 TSHPDIKLICAMLEWLNKKTRDAGYVPDCNA 726



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/464 (27%), Positives = 231/464 (49%), Gaps = 17/464 (3%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K L   I+K     D +    L++       +  A K+F+++   +   + TL +   ++
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRD 114

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
               QA    L + ++G   + F +  LLK     +  HL   +HA +YK G+  D FV 
Sbjct: 115 HQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVG 174

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            +LID+YS  G   V +A+ +F  +  +D+VSW  M+A   +     E+ +LF++M    
Sbjct: 175 TALIDAYSVRG--NVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIP--------HRNIVSWSTMVWGYSKDGDMEMAK 265
               N  + G  K+     AF + + +           ++     ++  Y+K G++  A+
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LF+ MP   L+PW+++I+ YA+   +KEA  L+ +M +  + P++ T  S+L ACA S 
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L LG ++H+ + K+    N  V NA++D+YAKCG ++N+M +F  +  ++ V+WN ++ 
Sbjct: 353 SLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIV 412

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
           G    G GE+A+ LF+ M +    P + T+  VL A      ++ G+Q +  +++  Y  
Sbjct: 413 GYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNK 472

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWG 484
              V     +ID+  + GR+ +A      M     V  NA+I G
Sbjct: 473 DTVVA--NSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICG 514



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 130/279 (46%), Gaps = 27/279 (9%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y +   ++ A  LFD MP    + +  +  GY+      +A     ++ + G + +    
Sbjct: 80  YVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVF 139

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            ++L       L  L   +HA + K     +  V  AL+D Y+  G++D A  VF+ +  
Sbjct: 140 TTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICC 199

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD+VSW  M+   A +   E++L LF++M+  G+ P+ +T  G L +C        G++ 
Sbjct: 200 KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCL-------GLEA 252

Query: 435 FYSMERDYGILPQVEHYGC----------MIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           F   +  +G   +    GC          +++L  +SG + +A RL + MP + + I W 
Sbjct: 253 FNVGKSVHGCALK----GCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMP-KTDLIPWS 307

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLS 521
            ++    ++   + ++E LD  +R++ +   P N+T  S
Sbjct: 308 LMIA---RYAQSDRSKEALDLFLRMRQTSVVPNNFTFAS 343


>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 187/566 (33%), Positives = 296/566 (52%), Gaps = 70/566 (12%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR----QMGLAIKVFNDIQ 76
           LQN   C  +N   Q++  IIK  L  +P  + +   +L  C      +  A K+F  + 
Sbjct: 34  LQN--HCTTINHFHQIYPHIIKTGLTLNPIASTR---ALTFCASPSGNINYAYKLFVRMP 88

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
           +P+++ +NT+IRA  ++S    A  +F+DM    +     TYP + KA       H    
Sbjct: 89  NPNLYSWNTIIRAFSRSSTPQFAISLFVDMLYSQIQPQYLTYPSVFKAYAQLGHAHYGAQ 148

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H  + K G   D F+ N++I  Y+                                  G
Sbjct: 149 LHGRVVKLGLQNDQFICNTIIYMYAN---------------------------------G 175

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G +SEARR+FD                           EL++     ++V+ ++M+ GY+
Sbjct: 176 GLMSEARRVFD-----------------------GKKLELYD----HDVVAINSMIMGYA 208

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K G+++ ++ LFD M  +T V W  +ISGY   G   EA  L+++M+  G +  + T++S
Sbjct: 209 KCGEIDESRNLFDDMITRTSVSWNSMISGYVRNGKLMEALELFNKMQVEGFEVSEFTMVS 268

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L ACA  G L  G  VH  I +  F+ N  V  A++DMY KCGS++NA+ VF    ++ 
Sbjct: 269 LLNACAHLGALQHGKWVHDYIKRNHFELNVIVVTAIIDMYCKCGSVENAVEVFETCPRRG 328

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPDKYTFVGVLCACTHAGFIDKGVQYF 435
           L  WN+++ GLAM+G   +A   FS+++      PD  +F+GVL AC H G I+K   YF
Sbjct: 329 LSCWNSIIIGLAMNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYF 388

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   Y I P ++HY C++D+LG++G L+EA  L++ MP++P+AIIWG+LL +CRKH  
Sbjct: 389 ELMMNKYEIEPSIKHYTCIVDVLGQAGLLEEAEELIKGMPLKPDAIIWGSLLSSCRKHRN 448

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           V++A      +  L  SD   Y ++SN+ AA+  + +    RL MK+   +K  G SS+E
Sbjct: 449 VQIARRAAQRVYELNPSDASGYVLMSNVHAASNKFEEAIEQRLLMKENLTEKEPGCSSIE 508

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMIN 581
           +  EVHEF    +LHPK+++IY ++N
Sbjct: 509 LYGEVHEFIAGGRLHPKTQEIYHLLN 534


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 192/570 (33%), Positives = 314/570 (55%), Gaps = 12/570 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL +  +K  L+++  +A  L+S  A CR +  A ++F  +   D+  +N +I  CVQN 
Sbjct: 263 QLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNG 322

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           L  +A  +F DM   G   D+ T   LL A    N     + +H  I +     D F+ +
Sbjct: 323 LLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVS 382

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           +L+D Y KC    V  A+ L+ +    D+V  +++I+G V  G   +A ++F  + E+  
Sbjct: 383 ALVDIYFKCR--DVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCI 440

Query: 213 --DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW-----STMVWGYSKDGDMEMAK 265
             +AV+  ++L   A    + L  E+   +  RN         S ++  Y+K G ++++ 
Sbjct: 441 KPNAVTVASVLPACASISALPLGQEIHGYV-LRNAYEGKCYVESALMDMYAKCGRLDLSH 499

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F +M  K  V W  +IS +++ G  +EA  L+ QM   G+K ++ T+ S L+ACA   
Sbjct: 500 YIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLP 559

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            +  G ++H  I K   K +    +AL+DMYAKCG+++ A+ VF  M  K+ VSWN+++ 
Sbjct: 560 AIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIIS 619

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
               HG  ++++    RM++EG+ PD  TF+ ++ AC HAG +++G+Q F  M ++Y I 
Sbjct: 620 AYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIA 679

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P++EH+ CM+DL  RSGRL +A++ +  MP +P+A IWG LL ACR H  VELA+     
Sbjct: 680 PRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQE 739

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L +L   + G Y ++SNI A  G W+ V+ VR  MK  +  K  G S V+V+N  H F  
Sbjct: 740 LFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVA 799

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
            D+ HP+SE IY  +  L ++L+  G+  +
Sbjct: 800 SDKSHPESEDIYTSLKALLQELREEGYVPR 829



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 142/493 (28%), Positives = 238/493 (48%), Gaps = 21/493 (4%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L  D Y+   LI   +    +  A   F+ +   D  L+N ++   ++      A R+F 
Sbjct: 172 LASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFR 231

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
           +M+  G   +  T    L  C  +        +H+L  KCG   ++ V N+L+  Y+KC 
Sbjct: 232 NMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCR 291

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTI 220
              +  A +LF  +   D+V+WN MI+G V+ G L EA  LF +M       D+V+  ++
Sbjct: 292 C--LDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSL 349

Query: 221 LDGYAKAGEMNLAFE----LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
           L        +    E    +     H +    S +V  Y K  D+  A+ L+D   A  +
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV 409

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V  + +ISGY   GM+++A +++  + E  +KP+  T+ S+L ACA    L LG ++H  
Sbjct: 410 VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGY 469

Query: 337 I--NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
           +  N Y  KC     +AL+DMYAKCG LD +  +F+ M+ KD V+WN+M+   + +G+ +
Sbjct: 470 VLRNAYEGKCYVE--SALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQ 527

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +AL LF +M  EG   +  T    L AC     I  G +  + +     I   +     +
Sbjct: 528 EALDLFRQMCMEGIKYNNVTISSALSACASLPAIYYGKE-IHGVIIKGPIKADIFAESAL 586

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GS 512
           ID+  + G ++ ALR+ + MP + N + W +++ A   H    L +E +  L R++  G 
Sbjct: 587 IDMYAKCGNMELALRVFEFMP-DKNEVSWNSIISAYGAHG---LVKESVSFLHRMQEEGY 642

Query: 513 DPGNYTMLSNIFA 525
            P + T L+ I A
Sbjct: 643 KPDHVTFLALISA 655



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 192/387 (49%), Gaps = 14/387 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  L     L Q K++   II+  +  D ++   L+     CR +  A  +++  +  DV
Sbjct: 350 LPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDV 409

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            + +T+I   V N ++ +A ++F  + E+ +  +  T   +L AC   +   L Q IH  
Sbjct: 410 VIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGY 469

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + +  Y G  +V ++L+D Y+KCG   + L+  +F  M  +D V+WNSMI+   + GE  
Sbjct: 470 VLRNAYEGKCYVESALMDMYAKCG--RLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQ 527

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---------RNIVSWSTM 251
           EA  LF +M   + + +N +    A +   +L    + K  H          +I + S +
Sbjct: 528 EALDLFRQMC-MEGIKYNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESAL 586

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  Y+K G+ME+A  +F+ MP K  V W  IIS Y   G+ KE+     +M+E G KPD 
Sbjct: 587 IDMYAKCGNMELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDH 646

Query: 312 GTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            T +++++ACA +GL+  G+++   + K Y           +VD+Y++ G LD A+    
Sbjct: 647 VTFLALISACAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIA 706

Query: 371 GMT-KKDLVSWNAMLYGLAMHGQGEKA 396
            M  K D   W A+L+   +H   E A
Sbjct: 707 DMPFKPDAGIWGALLHACRVHRNVELA 733



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/481 (23%), Positives = 202/481 (41%), Gaps = 81/481 (16%)

Query: 54  KLISSLALCRQMGLAIKVFNDIQDPDVHL---YNTLIRACVQNSLNAQAFRVFLDM--QE 108
           +L+    L R+   A+ VF+ +          +N LIR       ++ A   ++ M    
Sbjct: 75  RLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHP 134

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
                D  T P+++K+C       L +++H      G   D++V ++LI  YS  G++  
Sbjct: 135 AAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLL-- 192

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------------------ 210
             A+  F  M  RD V WN M+ G +K G++  A RLF  M                   
Sbjct: 193 RDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVC 252

Query: 211 ---------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                                E++    NT+L  YAK   ++ A+ LFE +P  ++V+W+
Sbjct: 253 AAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWN 312

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            M                               ISG  + G+  EA  L+  M  +G +P
Sbjct: 313 GM-------------------------------ISGCVQNGLLDEALGLFCDMLRSGARP 341

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D  TL+S+L A  +   L  G +VH  I +     +  + +ALVD+Y KC  +  A +++
Sbjct: 342 DSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLY 401

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           +     D+V  + ++ G  ++G  EKAL +F  + ++   P+  T   VL AC     + 
Sbjct: 402 DAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALP 461

Query: 430 KGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            G + + Y +   Y     VE    ++D+  + GRL  +  +   M ++ + + W +++ 
Sbjct: 462 LGQEIHGYVLRNAYEGKCYVE--SALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMIS 518

Query: 489 A 489
           +
Sbjct: 519 S 519



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 120/260 (46%), Gaps = 5/260 (1%)

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLL 327
           R  A + +PW  +I G+   G    A   Y +M    A   PD  TL  ++ +CA  G +
Sbjct: 98  RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAV 157

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG  VH +        +  V +AL+ MY+  G L +A   F+GM  +D V WN M+ G 
Sbjct: 158 SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGY 217

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
              G    A+ LF  M+  G  P+  T    L  C     +  GVQ  +S+    G+  +
Sbjct: 218 IKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQ-LHSLAVKCGLEQE 276

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           V     ++ +  +   L +A RL + +P + + + W  ++  C ++  ++ A  +   ++
Sbjct: 277 VAVANTLLSMYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGCVQNGLLDEALGLFCDML 335

Query: 508 RLKGSDPGNYTMLSNIFAAT 527
           R  G+ P + T++S + A T
Sbjct: 336 R-SGARPDSVTLVSLLPALT 354



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 97/234 (41%), Gaps = 11/234 (4%)

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTN---VCNALVDMYAKCGSLDNAMSVFN 370
           L+++L  C  +  L LG+++HA         N N   +   L+ MY       +A++VF+
Sbjct: 35  LLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFS 94

Query: 371 GMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACTHA 425
            + +      + WN ++ G    G    A+  + +M        PD +T   V+ +C   
Sbjct: 95  ALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAAL 154

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G +  G +  +   R  G+   V     +I +   +G L++A      MP   + ++W  
Sbjct: 155 GAVSLG-RLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWR-DCVLWNV 212

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           ++    K   V  A  +   + R+ G +P   T+   +     + + ++ V+L 
Sbjct: 213 MMDGYIKAGDVGGAVRLFRNM-RVSGCEPNFATLACFLSVCAAEADLLSGVQLH 265


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 183/561 (32%), Positives = 289/561 (51%), Gaps = 78/561 (13%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS  A   +   A+ +  ++  PD+  +N+++    +N    +A + F +M  + + + 
Sbjct: 142 MISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRNGEMVRAVKFFDEMPARDMVSW 201

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN-----SLIDSYSKCGVVG-- 167
           N      ++A +  +               G F  +  PN     +L++ Y + G +G  
Sbjct: 202 NLMLEGYVRAGDVDS-------------AAGLFAGVPSPNVVSWVTLLNGYCRAGRIGEA 248

Query: 168 ---------------------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
                                      +  A KLF  M +++ +SW +MI+ LV+GG+L 
Sbjct: 249 RELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISALVRGGKLQ 308

Query: 201 EARRLFDEMP-------------------------------ERDAVSWNTILDGYAKAGE 229
           EA+ L D+MP                                RDAV WNT++ GY   G 
Sbjct: 309 EAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAVCWNTMISGYVHCGM 368

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
           ++ A  LF+++P++++VSW+TM+ GY+ DG M  A  +F +M  +  V W  +ISG+ + 
Sbjct: 369 LDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSVISGFVQN 428

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+  EA + +  M     + D  T    L+ACA+   L +G + H+ + +  +  ++   
Sbjct: 429 GLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGYIGDSFAG 488

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           NAL+  YAKCG +  A  VF+ M   D+VSWNA++ G A +G G +A+ +F  M+D    
Sbjct: 489 NALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVFREMEDNDVR 548

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           PD+ TFVGVL AC+HAG ID+G  +F SM +DY + P  EHY CM+DLLGRSGRL EA  
Sbjct: 549 PDEVTFVGVLSACSHAGLIDEGFDFFNSMTKDYALRPVAEHYACMVDLLGRSGRLSEAFE 608

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           ++Q M V+PNA +WG +LGACR H   ELA+   + L  L+     NY +LSNI A  G 
Sbjct: 609 IIQGMQVQPNAGVWGAMLGACRVHKNHELAQLAAEKLYELEPHKTSNYVLLSNITAEAGK 668

Query: 530 WNKVANVRLQMKKTRAQKPSG 550
           W++  N+R+ +K+    K  G
Sbjct: 669 WDEAQNMRVFIKERGVHKTPG 689



 Score =  182 bits (462), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 145/534 (27%), Positives = 238/534 (44%), Gaps = 91/534 (17%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           ++L  L +   L   ++LF  +      R+      ++S+LA   ++  A ++F++I   
Sbjct: 16  QELTRLARSGQLAAARRLFDSMPS----RNTVSYNAMLSALARHGRIADARRLFDEIPRR 71

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK--ACNGKNWFHLVQM 136
           +   +N +I AC  +   A A  +F  M  +    D F++  ++   A  G+       +
Sbjct: 72  NTVSWNAMIAACSDHGRVADARDLFDAMPAR----DGFSWTLMVSCYARAGELGLARDAL 127

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
                 KC         N++I  Y+K G    ++A  L   M   DI+SWNS++ GL + 
Sbjct: 128 DRMPGDKC-----TACYNAMISGYAKHGRFDDAVA--LLREMPAPDIISWNSVLVGLTRN 180

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           GE+  A + FDEMP RD VSWN +L+GY +AG+++ A  LF  +P  N+VSW T++ GY 
Sbjct: 181 GEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYC 240

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG---- 312
           + G +  A+ LFDR+P + +  W +++SGY      +EA +L+ +M      PD      
Sbjct: 241 RAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEM------PDKNSISW 294

Query: 313 -TLISILA------------------ACAESGLLGLGMKVHASINKYR-----FKCNTNV 348
            T+IS L                   + A    L  G      I+  R      +    V
Sbjct: 295 TTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDDARLIFDGLEVRDAV 354

Query: 349 C-NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           C N ++  Y  CG LD AM +F  M  KD+VSWN M+ G A  GQ  KA+G+F +M    
Sbjct: 355 CWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQMRKAVGIFRKMNQR- 413

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD-------------------------- 441
              +  ++  V+      G   + +Q+F  M RD                          
Sbjct: 414 ---NTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGR 470

Query: 442 --YGILPQVEHYG------CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
             + +L +  + G       +I    + GR+ EA ++   MP  P+ + W  L+
Sbjct: 471 QFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPA-PDIVSWNALI 523



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/491 (24%), Positives = 223/491 (45%), Gaps = 56/491 (11%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109
           Y + + ++ LA   Q+  A ++F+ +   +   YN ++ A  ++   A A R+F ++  +
Sbjct: 12  YRSNQELTRLARSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADARRLFDEIPRR 71

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQ-MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
               +  ++  ++ AC+        + +  A+  + G+   +     ++  Y++ G +G 
Sbjct: 72  ----NTVSWNAMIAACSDHGRVADARDLFDAMPARDGFSWTL-----MVSCYARAGELG- 121

Query: 169 SLAKKLFMSM-GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
            LA+     M G++    +N+MI+G  K G   +A  L  EMP  D +SWN++L G  + 
Sbjct: 122 -LARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVGLTRN 180

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           GEM  A + F+++P R++VSW+ M+ GY + GD++ A  LF  +P+  +V W  +++GY 
Sbjct: 181 GEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAGLFAGVPSPNVVSWVTLLNGYC 240

Query: 288 EKGMAKEAARLYDQ---------------------MEEA----GLKPDDGTL--ISILAA 320
             G   EA  L+D+                     MEEA       PD  ++   ++++A
Sbjct: 241 RAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFTEMPDKNSISWTTMISA 300

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
               G L     +   +    F   T    AL+  Y +   +D+A  +F+G+  +D V W
Sbjct: 301 LVRGGKLQEAKDLLDKMPFDSFAAKT----ALMHGYLQSKMIDDARLIFDGLEVRDAVCW 356

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           N M+ G    G  ++A+ LF +M ++    D  ++  ++    H G + K V  F  M +
Sbjct: 357 NTMISGYVHCGMLDEAMVLFQQMPNK----DMVSWNTMIAGYAHDGQMRKAVGIFRKMNQ 412

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL---LGACRKHNAVE 497
              +      +  +I    ++G   EAL+    M  +     W T    L AC    A+ 
Sbjct: 413 RNTV-----SWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALH 467

Query: 498 LAEEVLDCLIR 508
           +  +    L R
Sbjct: 468 VGRQFHSLLAR 478



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 108/218 (49%), Gaps = 10/218 (4%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C  L++   LF Q+   D+         +I+  A   QM  A+ +F  +   +   +N++
Sbjct: 366 CGMLDEAMVLFQQMPNKDM----VSWNTMIAGYAHDGQMRKAVGIFRKMNQRNTVSWNSV 421

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   VQN L  +A + F+ M+      D  TY   L AC      H+ +  H+L+ + GY
Sbjct: 422 ISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSACADLAALHVGRQFHSLLARSGY 481

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
            GD F  N+LI +Y+KCG   +  A+++F  M   DIVSWN++I G    G  +EA  +F
Sbjct: 482 IGDSFAGNALISAYAKCGR--ILEARQVFDEMPAPDIVSWNALIDGYASNGHGTEAISVF 539

Query: 207 DEMPERDA----VSWNTILDGYAKAGEMNLAFELFEKI 240
            EM + D     V++  +L   + AG ++  F+ F  +
Sbjct: 540 REMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSM 577



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           Y  M+  L R GR+ +A RL   +P   N + W  ++ AC  H  V  A ++ D    + 
Sbjct: 45  YNAMLSALARHGRIADARRLFDEIP-RRNTVSWNAMIAACSDHGRVADARDLFDA---MP 100

Query: 511 GSDPGNYTMLSNIFAATGD 529
             D  ++T++ + +A  G+
Sbjct: 101 ARDGFSWTLMVSCYARAGE 119


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  328 bits (842), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/452 (38%), Positives = 258/452 (57%), Gaps = 6/452 (1%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSM--GERDIVSWNSMIAGLVKGGELSEARRLF 206
           D    N+L+  +   G   V  A+ LF +M    R++ SWN+M++GL + G + EAR +F
Sbjct: 81  DAVSYNTLLSCHFAAG--DVRGARDLFAAMPATARNVTSWNTMLSGLSRSGAVGEARAVF 138

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAK 265
             MP R+++SWN ++  +A AG+M  A E FE  P + N V W+ MV GY   G +E A 
Sbjct: 139 LAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHVEKAM 198

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAES 324
             F+ MP ++LV W  +++GY +   A++A  ++  M  +A ++P++ TL S+L  C+  
Sbjct: 199 QFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCSNL 258

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             LG G +VH    K           +LV MY KCG LD A  +F+ M  +D+++WNAM+
Sbjct: 259 SALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMI 318

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A HG G +A+ LF +MK +G  P+  TFV VL AC H G  D G+Q F  M+  YGI
Sbjct: 319 SGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQEVYGI 378

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
             +V+HY CM+DLL R+G L+ A+ L++SMP +P+   +GTLL A R +  +E AE    
Sbjct: 379 EARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAEFAAG 438

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            LI     + G Y  L+NI+A    W  V+ VR  MK     K  G S VE++  +H F 
Sbjct: 439 KLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVIHVFR 498

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
             D+LHP+   I++ +  L + +K +G+   L
Sbjct: 499 SNDRLHPQLSLIHERLCQLEERMKAMGYVPDL 530



 Score = 65.1 bits (157), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 106/248 (42%), Gaps = 21/248 (8%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKACN 126
           A++ F  +    +  +N ++   V+NS    A  VF  M ++  V  +  T   +L  C+
Sbjct: 197 AMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLGCS 256

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
             +     + +H    K      +    SL+  Y KCG   +  A KLF  M  RD+++W
Sbjct: 257 NLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCG--DLDGACKLFSEMRIRDVIAW 314

Query: 187 NSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241
           N+MI+G    G+  EA  LF++M     E + +++  +L      G  +   + FE++  
Sbjct: 315 NAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQE 374

Query: 242 ----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                  +  +S MV    + G +E A  L   MP +         S Y   G    A+R
Sbjct: 375 VYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHP------SAY---GTLLNASR 425

Query: 298 LYDQMEEA 305
           +Y  ME A
Sbjct: 426 VYKNMEFA 433



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C NL+     +Q+     KL L R       L+S    C  +  A K+F++++  DV  +
Sbjct: 255 CSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAW 314

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           N +I     +    +A  +F  M+ +GV  +  T+  +L AC
Sbjct: 315 NAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTAC 356


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/551 (34%), Positives = 294/551 (53%), Gaps = 10/551 (1%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL   +I+   + DP +A  +I+  + C  +  A K+F+ +   D   +N LI   VQN 
Sbjct: 299 QLHGLVIRSGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNG 358

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              +A  +F  M   GV  D+ T+   L +          + +H+ I + G   D+++ +
Sbjct: 359 FTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVYLKS 418

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           +L+D Y K G   V +A K F      D+    +MI+G V  G   EA  LF  + +   
Sbjct: 419 ALVDIYFKGG--DVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGM 476

Query: 213 --DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAKL 266
             + ++  ++L   A    + L  EL   I  + + +     S++ + Y+K G +++A  
Sbjct: 477 VPNCLTMASVLPACAALASLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQ 536

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
            F RMP K  V W ++I  +++ G  + A  L+ QM  +G K D  +L + L+ACA    
Sbjct: 537 FFRRMPVKDSVCWNLMIVSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPA 596

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L  G ++H  + +  F  +T V + L+DMY+KCG L  A SVF+ M  K+ VSWN+++  
Sbjct: 597 LYYGKELHCFVVRNSFISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAA 656

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
              HG+  + L LF  M + G  PD  TF+ ++ AC HAG +D+G+ YF  M  +YGI  
Sbjct: 657 YGNHGRPRECLDLFHEMVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICA 716

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           ++EH+ CM+DL GR+GRL EA   ++SMP  P+A  WG+LLGACR H  VELA+     L
Sbjct: 717 RMEHFACMVDLYGRAGRLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHL 776

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           + L  ++ G Y +LSN+ A  G+W  V  VR  MK+   QK  G S ++V+   H FS  
Sbjct: 777 VELDPNNSGYYVLLSNVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGGTHMFSAA 836

Query: 567 DQLHPKSEQIY 577
           D  HP+S +IY
Sbjct: 837 DGCHPQSVEIY 847



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/517 (28%), Positives = 234/517 (45%), Gaps = 33/517 (6%)

Query: 11  FSKRRLLEEKLQ-----------NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL 59
            SK RL EE L            N        Q +Q+ A+++   +     +  +++   
Sbjct: 62  LSKSRLFEESLAAQLESMFRAFPNSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMY 121

Query: 60  ALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYP 119
            LCR       +F  +Q      +N LIR          A   F  M    V  D +T+P
Sbjct: 122 VLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFP 181

Query: 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
           +++KAC G N   L +M+H L    G+  D+F+ +SLI  Y+  G   +  AK LF  + 
Sbjct: 182 YVIKACGGLNNVPLCKMVHELARSMGFHMDLFIGSSLIKLYTDNGY--IHDAKYLFDELP 239

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFE 235
            RD + WN M+ G VK G+ + A   F EM       ++VS+  +L   A  G +    +
Sbjct: 240 VRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQ 299

Query: 236 L--------FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           L        FE  P       +T++  YSK G++  A+ +FD MP    V W  +I+GY 
Sbjct: 300 LHGLVIRSGFESDP----TVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYV 355

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           + G   EA  L+  M  +G+K D  T  S L +  +SG L    +VH+ I ++    +  
Sbjct: 356 QNGFTDEAVALFKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVRHGVPFDVY 415

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           + +ALVD+Y K G ++ A   F   T  D+    AM+ G  ++G   +AL LF  +  EG
Sbjct: 416 LKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEG 475

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID-LLGRSGRLKE 466
             P+  T   VL AC     +  G +    + +    L  V   G  I  +  +SGRL  
Sbjct: 476 MVPNCLTMASVLPACAALASLKLGKELHCDILKKG--LENVCQVGSSITYMYAKSGRLDL 533

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           A +  + MPV+ +++ W  ++ +  ++   ELA ++ 
Sbjct: 534 AYQFFRRMPVK-DSVCWNLMIVSFSQNGKPELAIDLF 569



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 120/301 (39%), Gaps = 35/301 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   K+L   I+K  L+    +   +    A   ++ LA + F  +   D   +N +I 
Sbjct: 495 SLKLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIV 554

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           +  QN     A  +F  M   G   D+ +    L AC      +  + +H  + +  +  
Sbjct: 555 SFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFIS 614

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D FV ++LID YSKCG   ++LA+ +F  M  ++ VSWNS+IA     G   E   LF E
Sbjct: 615 DTFVASTLIDMYSKCG--KLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHE 672

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
           M E     D V++  I+     AG ++             I  +  M   Y     ME  
Sbjct: 673 MVEAGIQPDHVTFLVIMSACGHAGLVD-----------EGIYYFRCMTEEYGICARMEHF 721

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             + D                Y   G   EA   +D ++     PD GT  S+L AC   
Sbjct: 722 ACMVDL---------------YGRAGRLHEA---FDTIKSMPFTPDAGTWGSLLGACRLH 763

Query: 325 G 325
           G
Sbjct: 764 G 764


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 169/411 (41%), Positives = 251/411 (61%), Gaps = 9/411 (2%)

Query: 202 ARRLFD--EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWGY 255
           A+++F   E  + +   WN+ L   A+      A  LF ++   ++     + S+++   
Sbjct: 112 AQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRAC 171

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
               D+   ++L   +       WT +I+GY + G AKEA  L+ +MEEAG+K ++ T++
Sbjct: 172 LNLLDLSNGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVV 231

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           ++LAACA+ G L LGM++H   N++ FK N  + N L+DMY KCG L+ A  VF  M ++
Sbjct: 232 AVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER 291

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
            +VSW+AM+ GLAMHG+ E+AL LFS M   G  P+  TF+G+L AC+H G I +G ++F
Sbjct: 292 TVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFF 351

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            SM RDYGI+PQ+EHYGCM+DLL R+G L EA   + +MP++PN ++WG LLGACR H  
Sbjct: 352 ASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKN 411

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           VE+AEE +  L+ L   + G Y +LSNI+A  G W   A VR  MK  + +K  G SS+ 
Sbjct: 412 VEMAEEAIKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSIT 471

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA---EIGEG 603
           VD  VHEF   ++ HP +EQI+Q    L ++++  G+    S    +I EG
Sbjct: 472 VDGVVHEFVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEG 522



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/384 (25%), Positives = 167/384 (43%), Gaps = 52/384 (13%)

Query: 28  KNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI--QDPDVHL 82
           +N N   + +Q+ AQIIK +         ++    A       A ++F  +  Q P+  +
Sbjct: 69  RNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFV 128

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N+ ++A  +      A  +F  +++  V  D FT   +L+AC         +++H ++ 
Sbjct: 129 WNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLSNGRILHGVVE 188

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+                                      SW SMIAG V+ G+  EA
Sbjct: 189 KVGF-------------------------------------RSWTSMIAGYVQCGKAKEA 211

Query: 203 RRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWG 254
             LF +M E     + V+   +L   A  G ++L   + E        RN+   +T++  
Sbjct: 212 IHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDM 271

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G +E A  +F+ M  +T+V W+ +I G A  G A+EA RL+  M + G++P+  T 
Sbjct: 272 YVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTF 331

Query: 315 ISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMS-VFNGM 372
           I +L AC+  GL+  G +  AS+ + Y           +VD+ ++ G L  A   + N  
Sbjct: 332 IGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMP 391

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKA 396
            K + V W A+L    +H   E A
Sbjct: 392 MKPNGVVWGALLGACRVHKNVEMA 415



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 17/194 (8%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
            +R+  I+  LI     C  +  A KVF ++++  V  ++ +I     +    +A R+F 
Sbjct: 258 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFS 317

Query: 105 DMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           DM + G+  +  T+  LL AC+       G+ +F  +   + +I +  ++G       ++
Sbjct: 318 DMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYG------CMV 371

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS- 216
           D  S+ G++  +    L M M    +V W +++        +  A      + E D ++ 
Sbjct: 372 DLLSRAGLLHEAHEFILNMPMKPNGVV-WGALLGACRVHKNVEMAEEAIKHLLELDPLND 430

Query: 217 --WNTILDGYAKAG 228
             +  + + YA+AG
Sbjct: 431 GYYVVLSNIYAEAG 444


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 292/535 (54%), Gaps = 50/535 (9%)

Query: 103 FLDMQEKGVFTDNFTYPFLLKA----CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           +  M  +G   D +T+P LLKA      G       + +HA + + G   +  V +SL+ 
Sbjct: 7   YARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVA 66

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDI-VSWNSMIAGLVKGGELSEARRLFDEMPERDA--- 214
           +Y+                +GE D  V+WN++I+G  +GG   E+   F +M    A   
Sbjct: 67  AYTA-----GGDGAAARALVGECDTPVAWNALISGHNRGGRFGESCGSFVDMARAGAAPT 121

Query: 215 -VSW------------------------------------NTILDGYAKAGEMNLAFELF 237
            V++                                    N ++D YA+  +M  A+++F
Sbjct: 122 PVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVF 181

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
           + +  R++VSW++++ G ++ G ++ A+ LFDRMP +  V WT +I GY      +EA  
Sbjct: 182 DGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALE 241

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           ++ +M+ + +  D+ T++S++ ACA+ G L +G  V   +++   K +  V NAL+DMY+
Sbjct: 242 MFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYS 301

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS++ A+ VF GM  +D  +W A++ GLA++G  E+A+ +F RM      PD+ TF+G
Sbjct: 302 KCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIG 361

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           VL ACTHAG +DKG ++F SM   Y I P V HYGC+IDLLGR+G++ EAL  +  MP+ 
Sbjct: 362 VLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMT 421

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537
           PN+ IWGTLL ACR H   E+ E V + L+ L   +   Y +LSNI+A    W  V  +R
Sbjct: 422 PNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDVRRLR 481

Query: 538 LQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             + +   +K  G S +E+D  +HEF   DQ HP S++IY  + ++  DL  VG+
Sbjct: 482 HAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGY 536



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 176/404 (43%), Gaps = 46/404 (11%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
            + + A +++L + R+ ++A  L+++         A  +  +   P    +N LI    +
Sbjct: 42  ARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTPVA--WNALISGHNR 99

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKCGYFGDIF 151
                ++   F+DM   G      TY  +L AC  G     L   +H  +   G   D+ 
Sbjct: 100 GGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLR 159

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           V N+L+D Y++C  +G   A K+F  M  R +VSW S+++GL + G++ EAR LFD MPE
Sbjct: 160 VENALVDMYAECADMGS--AWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPE 217

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----------------------W- 248
           RD VSW  ++DGY  A     A E+F ++ + N+ +                      W 
Sbjct: 218 RDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWV 277

Query: 249 ----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
                           + ++  YSK G +E A  +F  M  +    WT II G A  G  
Sbjct: 278 RVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYE 337

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNA 351
           +EA  ++ +M      PD+ T I +L AC  +GL+  G +   S I  Y    N      
Sbjct: 338 EEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGC 397

Query: 352 LVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
           ++D+  + G +  A+   + M    +   W  +L    +HG  E
Sbjct: 398 IIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSE 441



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 117/282 (41%), Gaps = 19/282 (6%)

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAE----SGLLGLGMKVHASINKYRFKCNTNV 348
           ++A   Y +M   G +PD  T  ++L A A     SG       VHA + +     N +V
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            ++LV  Y   G    A ++         V+WNA++ G    G+  ++ G F  M   G 
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGECDTP--VAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 409 GPDKYTFVGVLCACTHAGF-IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467
            P   T+V VL AC      +  G+Q  +      G+LP +     ++D+      +  A
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQ-VHGRVVGSGVLPDLRVENALVDMYAECADMGSA 177

Query: 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            ++   M V  + + W +LL    +   V+ A ++ D   R+   D  ++T + + +   
Sbjct: 178 WKVFDGMQVR-SVVSWTSLLSGLARLGQVDEARDLFD---RMPERDTVSWTAMIDGYV-- 231

Query: 528 GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
             W   A  R  ++  R  + S  S+ E    V   + C QL
Sbjct: 232 --W--AARFREALEMFREMQYSNVSADEF-TMVSVITACAQL 268


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 175/526 (33%), Positives = 289/526 (54%), Gaps = 16/526 (3%)

Query: 81  HLYNTLIRACVQNSLNAQAFR-VFLDMQEKGVFTDNFTYPFLLKAC---NGKNWFHLVQM 136
           +LY T+  +C+Q     +  + +   M + G+  D++     L  C      ++    Q+
Sbjct: 13  NLYETM--SCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQI 70

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA--KKLFMSMGERDIVSWNSMIAGLV 194
           +     +     D F+ N +I  +S       SL   +++  S    +  ++ S++    
Sbjct: 71  VFDGFDR----PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACS 126

Query: 195 KGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                 E  ++  ++     E D  + N++++ YA  G   LA  LF++IP  + VSW++
Sbjct: 127 NLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNS 186

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++ GY K G M++A  LF +M  K  + WT +ISGY +  M KEA +L+ +M+ + ++PD
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPD 246

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           + +L + L+ACA+ G L  G  +H+ +NK R + ++ +   L+DMYAKCG ++ A+ VF 
Sbjct: 247 NVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFK 306

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            + KK + +W A++ G A HG G +A+  F  M+  G  P+  TF  VL AC++ G +++
Sbjct: 307 NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEE 366

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G   FYSMERDY + P +EHYGC++DLLGR+G L EA R +Q MP++PNA+IWG LL AC
Sbjct: 367 GKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKAC 426

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
           R H  +EL EE+ + LI +     G Y   +NI A    W+K A  R  MK+    K  G
Sbjct: 427 RIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPG 486

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            S++ ++   HEF   D+ HP+ E+I      + + L+  G+  +L
Sbjct: 487 CSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPEL 532



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 201/428 (46%), Gaps = 46/428 (10%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---SLALCRQMGL 67
           FS    L E +  L +C    + KQ+ A+++K  L +D Y   K +S   S      +  
Sbjct: 8   FSLEHNLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPY 67

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  VF+    PD  L+N +IR    +    ++  ++  M       + +T+P LLKAC+ 
Sbjct: 68  AQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSN 127

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
            + F     IHA I K GY  D++  NSLI+SY+  G     LA  LF  + E D VSWN
Sbjct: 128 LSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTG--NFKLAHLLFDRIPEPDDVSWN 185

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-- 245
           S+I G VK G++  A  LF +M E++A+SW T++ GY +A     A +LF ++ + ++  
Sbjct: 186 SVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEP 245

Query: 246 -------------------------------------VSWSTMVWGYSKDGDMEMAKLLF 268
                                                V    ++  Y+K G+ME A  +F
Sbjct: 246 DNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVF 305

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
             +  K++  WT +ISGYA  G  +EA   + +M++ G+KP+  T  ++L AC+ +GL+ 
Sbjct: 306 KNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVE 365

Query: 329 LGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYG 386
            G  +  S+ + Y  K        +VD+  + G LD A      M  K + V W A+L  
Sbjct: 366 EGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKA 425

Query: 387 LAMHGQGE 394
             +H   E
Sbjct: 426 CRIHKNIE 433



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 143/349 (40%), Gaps = 71/349 (20%)

Query: 24  LHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C NL+   +T Q+ AQI KL  + D Y    LI+S A+     LA  +F+ I +PD 
Sbjct: 122 LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181

Query: 81  HLYN-------------------------------TLIRACVQNSLNAQAFRVFLDMQEK 109
             +N                               T+I   VQ  +N +A ++F +MQ  
Sbjct: 182 VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNS 241

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
            V  DN +    L AC         + IH+ + K     D  +   LID Y+KCG +  +
Sbjct: 242 DVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           L  ++F ++ ++ + +W ++I+G    G   EA   F EM                   +
Sbjct: 302 L--EVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQ------------------K 341

Query: 230 MNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP-----AKTLVPWTIIIS 284
           M +           N+++++ ++   S  G +E  KL+F  M        T+  +  I+ 
Sbjct: 342 MGIK---------PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVD 392

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
                G+  EA R    ++E  LKP+     ++L AC     + LG ++
Sbjct: 393 LLGRAGLLDEAKRF---IQEMPLKPNAVIWGALLKACRIHKNIELGEEI 438


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 312/583 (53%), Gaps = 16/583 (2%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           +RR++ + L+   +  +L    QL A ++KL    D  +   LI   A C ++ +A +VF
Sbjct: 3   RRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVF 62

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + + + +V  +  L+   + +    +  R+F +M+  G   + FT    LKAC G     
Sbjct: 63  DGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAG 122

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           +   IH +  + G+ G   V NSL+  YSK    G   A+++F  +  R++ +WNSMI+G
Sbjct: 123 V--QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGD--ARRVFDVIPSRNLATWNSMISG 178

Query: 193 LVKGGELSEARRLFDEMPER-----DAVSWNTILD-----GYAKAG-EMNLAFELFEKIP 241
               G+  ++  +F EM  R     D  ++ ++L      G A+ G +++ A  +    P
Sbjct: 179 YAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSP 238

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N +    ++  Y K   + +A  +FD +  +  + WT +I G+A++G  KEA  L+ +
Sbjct: 239 ASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRR 298

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
              +G++ D   L S++A  A+  L+  G +VH    K     + +V N+LVDMY KCG 
Sbjct: 299 FWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGL 358

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
              A   F  M  +++VSW AM+ G+  HG G +A+ LF  M++EG   D+  ++ +L A
Sbjct: 359 TGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSA 418

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H+G +D+  +YF  + +D  + P+ EHY CM+DLLGR+G L+EA  L+ SMP+EP   
Sbjct: 419 CSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG 478

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W TLL ACR H  V +  EV D L+ + G +P NY MLSNI A  G+W +   +R  M+
Sbjct: 479 VWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMR 538

Query: 542 KTRAQKPSGASSVEVDNEVHEF-SVCDQLHPKSEQIYQMINTL 583
           +   +K  G S  EVD EVH F    D  HP++  I + +  +
Sbjct: 539 RKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREV 581


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 191/573 (33%), Positives = 308/573 (53%), Gaps = 6/573 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+  +++ AQ +K   +   ++   L++  A C  +  A  VFN ++  D+  +NTL+  
Sbjct: 217 LDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAG 276

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
              N    +A ++F + +         TY  ++K C       L + +H+ + K G+   
Sbjct: 277 LQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLT 336

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V  +L D+YSKCG +  +L     M+ G R++VSW ++I+G ++ G++  A  LF  M
Sbjct: 337 GNVMTALADAYSKCGELADAL-NIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAK 265
            E   +          KA    L  ++  ++   N        + ++  YSK G  E A 
Sbjct: 396 REDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDAL 455

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA-ES 324
            +F  +  K +V W+ ++S +A+ G  + A  L+++M   G+KP++ T+ S++ ACA  S
Sbjct: 456 SIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPS 515

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             +  G + HA   KYR+     V +ALV MY++ G++D+A  VF   T +DLVSWN+M+
Sbjct: 516 AGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMI 575

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A HG   KA+  F +M+  G   D  TF+ V+  CTH G + +G QYF SM RD+ I
Sbjct: 576 SGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKI 635

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P +EHY CM+DL  R+G+L E + L++ MP    A++W TLLGACR H  VEL +   D
Sbjct: 636 NPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSAD 695

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L+ L+  D   Y +LSNI+AA G W +   VR  M   + +K +G S +++ N+VH F 
Sbjct: 696 KLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFI 755

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             D+ HP S+QIY+ +  +   LK  G++   S
Sbjct: 756 AFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTS 788



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 194/420 (46%), Gaps = 41/420 (9%)

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGV 168
           GV  D+ T   +LKAC       L + +H L  KCG+  G++    SL+D Y KCG V  
Sbjct: 94  GVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCE 153

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
            +  ++F  M ++++V+W S++ G       SE   LF  M       +  ++ ++L   
Sbjct: 154 GI--EVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAV 211

Query: 225 AKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           A  G ++L   +  +        ++   ++++  Y+K G +E AK +F+ M  + +V W 
Sbjct: 212 ASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWN 271

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +++G        EA +L+ +      K    T  +++  CA    L L  ++H+ + K+
Sbjct: 272 TLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKH 331

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGL 399
            F    NV  AL D Y+KCG L +A+++F+  T  +++VSW A++ G   +G    A+ L
Sbjct: 332 GFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVL 391

Query: 400 FSRMKDEGFGPDKYTFVGVLCAC-------THAGFIDKGVQY--------------FYSM 438
           FSRM+++   P+++T+  +L A         HA  I    Q+              F S 
Sbjct: 392 FSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGST 451

Query: 439 ERDYGILPQVEH-----YGCMIDLLGRSGRLKEALRLVQSMPVE---PNAIIWGTLLGAC 490
           E    I   +E      +  M+    ++G  + A  L   M ++   PN     +++ AC
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 151/339 (44%), Gaps = 42/339 (12%)

Query: 202 ARRLFDEMPERDA-VSWNTILDGYAKAG----------------------EMNLAFELFE 238
           AR   DE+P RDA V  N +L  YA+ G                       ++   +   
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 239 KIPHR------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
            +P R                   + + +++V  Y K G +     +F+ MP K +V WT
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +++G A   M  E   L+ +M   G+ P+  T  S+L+A A  G L LG +VHA   K+
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
             + +  VCN+L++MYAKCG +++A SVFN M  +D+VSWN ++ GL ++    +AL LF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
              +       + T+  V+  C +   +    Q  +S    +G          + D   +
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQ-LHSCVLKHGFHLTGNVMTALADAYSK 349

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            G L +AL +        N + W  ++  C ++  + LA
Sbjct: 350 CGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 180/562 (32%), Positives = 313/562 (55%), Gaps = 11/562 (1%)

Query: 30   LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
            + + K++   ++KL    +  +   LI++      +  A  +F+++ +PDV  +N++I  
Sbjct: 486  VKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMING 545

Query: 90   CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            CV N  +     +F+ M   GV  D  T   +L A        L + +H    K  +  +
Sbjct: 546  CVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEE 605

Query: 150  IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            +   N+L+D YSKCG   ++ A ++F+ MG+  IVSW S IA  V+ G  S+A  LFDEM
Sbjct: 606  VVFSNTLLDMYSKCG--NLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEM 663

Query: 210  PER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDM 261
              +    D  +  +I+   A +  ++   ++   +       N+   + ++  Y+K G +
Sbjct: 664  QSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSV 723

Query: 262  EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
            E A+L+F ++P K +V W  +I GY++  +  EA  L+  M++   KPDD T+  +L AC
Sbjct: 724  EEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPAC 782

Query: 322  AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            A    L  G ++H  I +  +  + +V  ALVDMYAKCG L  A  +F+ + KKDL+SW 
Sbjct: 783  AGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWT 842

Query: 382  AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
             M+ G  MHG G +A+  F+ M+  G  PD+ +F  +L AC+H+G +++G ++F SM  +
Sbjct: 843  VMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNE 902

Query: 442  YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
             G+ P++EHY C++DLL R G L +A + ++SMP++P+  IWG LL  CR H+ V+LAE+
Sbjct: 903  CGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEK 962

Query: 502  VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
            V + +  L+  +   Y +L+N++A    W +V  +R +M+K   ++  G S +EV  + +
Sbjct: 963  VAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFN 1022

Query: 562  EFSVCDQLHPKSEQIYQMINTL 583
             F   +  HP++++I  ++  L
Sbjct: 1023 IFVAGNSKHPQAKRIDVLLRKL 1044



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 155/516 (30%), Positives = 254/516 (49%), Gaps = 18/516 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L   K++ + II   +  D  +  KL+     C  +    K+F+ I +  V L+N L+
Sbjct: 383 KSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLM 442

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               +     ++  +F  MQ+ GV  + +T+  +LK           + +H  + K G+ 
Sbjct: 443 SEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFG 502

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +  V NSLI +Y K G  GV  A  LF  + E D+VSWNSMI G V  G       +F 
Sbjct: 503 SNTAVVNSLIAAYFKFG--GVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFI 560

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDG 259
           +M     E D  +  ++L  +A  G ++L   L     +      +V  +T++  YSK G
Sbjct: 561 QMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCG 620

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           ++  A  +F +M   T+V WT  I+ Y  +G+  +A  L+D+M+  G++PD  T+ SI+ 
Sbjct: 621 NLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVH 680

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           ACA S  L  G  VH+ + K     N  V NAL++MYAKCGS++ A  VF+ +  KD+VS
Sbjct: 681 ACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVS 740

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN M+ G + +    +AL LF  M+ + F PD  T   VL AC     +DKG +    + 
Sbjct: 741 WNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHIL 799

Query: 440 RDYGILPQVEHYGC-MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
           R  G    + H  C ++D+  + G L  A  L   +P + + I W  ++     H     
Sbjct: 800 RR-GYFSDL-HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMHGFGNE 856

Query: 499 AEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNK 532
           A    +  +R+ G +P   +++++ N  + +G  N+
Sbjct: 857 AISTFN-EMRIAGIEPDESSFSVILNACSHSGLLNE 891



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 183/376 (48%), Gaps = 21/376 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL+  + L    +K     +   +  L+   + C  +  A +VF  + D  +  + + I 
Sbjct: 586 NLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIA 645

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A V+  L + A  +F +MQ KGV  D +T   ++ AC   +     + +H+ + K G   
Sbjct: 646 AYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGS 705

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++ V N+LI+ Y+KCG   V  A+ +F  +  +DIVSWN+MI G  +    +EA  LF +
Sbjct: 706 NLPVTNALINMYAKCG--SVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLD 763

Query: 209 MPER---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
           M ++   D ++   +L   A    ++   E+   I  R   S       +V  Y+K G +
Sbjct: 764 MQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 823

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
            +A+LLFD +P K L+ WT++I+GY   G   EA   +++M  AG++PD+ +   IL AC
Sbjct: 824 VLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNAC 883

Query: 322 AESGLLGLGMKVHASINKYRFKCNTN------VCNALVDMYAKCGSLDNAMSVFNGM-TK 374
           + SGLL  G K     N  R +C          C  +VD+ A+ G+L  A      M  K
Sbjct: 884 SHSGLLNEGWKF---FNSMRNECGVEPKLEHYAC--VVDLLARMGNLSKAYKFIESMPIK 938

Query: 375 KDLVSWNAMLYGLAMH 390
            D   W  +L G  +H
Sbjct: 939 PDTTIWGVLLSGCRIH 954



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 193/421 (45%), Gaps = 16/421 (3%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           +Y  +L+ C  K      + +H++I   G   D  +   L+  Y  CG   +   +K+F 
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCG--DLVQGRKIFD 428

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV----SWNTILDGYAKAGEMNL 232
            +    +  WN +++   K G   E+  LF +M +   V    ++  +L  +A  G++  
Sbjct: 429 KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKE 488

Query: 233 AFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288
              +   +       N    ++++  Y K G +E A  LFD +    +V W  +I+G   
Sbjct: 489 CKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G +     ++ QM   G++ D  TL+S+L A A  G L LG  +H    K  F      
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVF 608

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408
            N L+DMY+KCG+L+ A  VF  M    +VSW + +      G    A+GLF  M+ +G 
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468
            PD YT   ++ AC  +  +DKG +  +S     G+   +     +I++  + G ++EA 
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKG-RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEAR 727

Query: 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-KGSDPGNYTMLSNIFAAT 527
            +   +PV+ + + W T++G   +++   L  E L+  + + K   P + TM   + A  
Sbjct: 728 LVFSKIPVK-DIVSWNTMIGGYSQNS---LPNEALELFLDMQKQFKPDDITMACVLPACA 783

Query: 528 G 528
           G
Sbjct: 784 G 784



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 10/211 (4%)

Query: 283 ISGYAEKGMAKEAARLYDQME--EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
           I+ + E G  + A  L  + +  E GL     +  S+L  CAE   L  G +VH+ I   
Sbjct: 343 INKFCEMGDLRNAIELLTKSKSYELGLN----SYCSVLQLCAEKKSLEDGKRVHSVIISN 398

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
               +  +   LV MY  CG L     +F+ +    +  WN ++   A  G   +++ LF
Sbjct: 399 GISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 458

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLG 459
            +M+  G   + YTF  VL      G + +  + + Y ++  +G    V     +I    
Sbjct: 459 KKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAV--VNSLIAAYF 516

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           + G ++ A  L   +  EP+ + W +++  C
Sbjct: 517 KFGGVESAHNLFDELS-EPDVVSWNSMINGC 546


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 182/519 (35%), Positives = 289/519 (55%), Gaps = 13/519 (2%)

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA-CNGKNWFHLVQM 136
           P V  + +L+R  V++ L A A R+F  M E+    ++ TY  LL    +        ++
Sbjct: 110 PSVVSFTSLLRGYVRHGLLADAIRLFHQMPER----NHVTYTVLLGGFLDAGRVNEARKL 165

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
              +  K     D+    +++  Y + G   ++ A+ LF  M +R++VSW +MI+G  + 
Sbjct: 166 FDEMPDK-----DVVARTAMLSGYCQAG--RITEARALFDEMPKRNVVSWTAMISGYAQN 218

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G++  AR+LF+ MP+R+ VSW  +L GY +AG +  A +LF  +P   + + + M+ G+ 
Sbjct: 219 GKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFG 278

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           + G ++ AK +F+RM A+    W+ +I  Y +     EA   + +M   G++P+  + IS
Sbjct: 279 QHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFIS 338

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           IL  CA       G ++HA++ +  F  +    +AL+ MY KCG+LD A  VFN    KD
Sbjct: 339 ILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKD 398

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +V WN+M+ G A HG GE+ALG+F  ++     PD  T++GVL AC++ G + +G + F 
Sbjct: 399 VVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFN 458

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM  +  I     HY CM+DLLGR+G + EAL L+ +MPVEP+AIIWG L+GACR H   
Sbjct: 459 SMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNA 518

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           E+AE     L+ L+    G Y +LS+I+ +TG W   +++R  +      K  G S +E 
Sbjct: 519 EIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEY 578

Query: 557 DNEVHEFSVCDQL-HPKSEQIYQMINTLGKDLKPVGHAA 594
           +  VH F+  D L HP+   I  M+  L   L   G++A
Sbjct: 579 NKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSA 617



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 175/422 (41%), Gaps = 77/422 (18%)

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD----------------- 213
           A+  F +M  R   S+N++IAG  +      A  LF  MP RD                 
Sbjct: 36  ARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGLSLRRHT 95

Query: 214 ----------------AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                            VS+ ++L GY + G +  A  LF ++P RN V+++ ++ G+  
Sbjct: 96  LPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLD 155

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +  A+ LFD MP K +V  T ++SGY + G   EA  L+D+M     K +  +  ++
Sbjct: 156 AGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMP----KRNVVSWTAM 211

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ++  A++G + L  K+   +       N     A++  Y + G +++A  +FN M    +
Sbjct: 212 ISGYAQNGKVILARKLFEVMPDR----NEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPV 267

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRM--KDE----------------------------- 406
            + NAM+ G   HG  + A  +F RM  +D+                             
Sbjct: 268 AACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCR 327

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466
           G  P+  +F+ +L  C      D G +   +M R       V     +I +  + G L +
Sbjct: 328 GIRPNYTSFISILTVCAALATADYGRELHAAMLR-CSFDTDVFAVSALITMYIKCGNLDK 386

Query: 467 ALRLVQSMPVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           A R+      EP + ++W +++    +H   E A  + D L RL    P   T +  + A
Sbjct: 387 AKRVFNMF--EPKDVVMWNSMITGYAQHGLGEEALGIFDDL-RLARMAPDGITYIGVLTA 443

Query: 526 AT 527
            +
Sbjct: 444 CS 445



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 165/394 (41%), Gaps = 60/394 (15%)

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           +V+ N+ IA LV+ G +  AR  FD MP R   S+N ++ GY +    + A  LF ++P 
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 243 RN---------------------------------IVSWSTMVWGYSKDGDMEMAKLLFD 269
           R+                                 +VS+++++ GY + G +  A  LF 
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL--ISILAACAESGLL 327
           +MP +  V +T+++ G+ + G   EA +L+D+M      PD   +   ++L+   ++G +
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEM------PDKDVVARTAMLSGYCQAGRI 190

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
                +   + K     N     A++  YA+ G +  A  +F  M  ++ VSW AML G 
Sbjct: 191 TEARALFDEMPKR----NVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSWTAMLVGY 246

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILP 446
              G  E A  LF+ M D          VG        G +D     F  M  RD G   
Sbjct: 247 IQAGHVEDAEDLFNAMPDHPVAACNAMMVGF----GQHGMVDAAKAMFERMCARDDGT-- 300

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVL 503
               +  MI +  ++  L EAL   + M    + PN   + ++L  C      +   E+ 
Sbjct: 301 ----WSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELH 356

Query: 504 DCLIRLK-GSDPGNYTMLSNIFAATGDWNKVANV 536
             ++R    +D    + L  ++   G+ +K   V
Sbjct: 357 AAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRV 390



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 21/224 (9%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           ++L A +++     D +    LI+    C  +  A +VFN  +  DV ++N++I    Q+
Sbjct: 353 RELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQH 412

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGY 146
            L  +A  +F D++   +  D  TY  +L AC+       G+  F+ + M  ++     +
Sbjct: 413 GLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAH 472

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAG--LVKGGELSE-- 201
           +      + ++D   + G+V  +L   L  +M  E D + W +++    + K  E++E  
Sbjct: 473 Y------SCMVDLLGRAGLVDEAL--DLINNMPVEPDAIIWGALMGACRMHKNAEIAEVA 524

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           A++L  E+    A  +  +   Y   G    A ++ + I  RN+
Sbjct: 525 AKKLL-ELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNL 567


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 153/356 (42%), Positives = 239/356 (67%)

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +P +++VS + M+  Y+K G ++ A++LFD +  +  + W ++I GYA+ G+  E   L+
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM  A ++P++ T++++L+AC ++G L  G  VH+ I       N  V  +L+DMY+KC
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           GSL++A  VF  ++ KD+V+WN+M+ G AMHG  + AL LF  M   G+ P   TF+GVL
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+HAG + +G ++FYSM+ +YGI P+VEHYGCM++LLGR+G L+EA  LV++M ++ +
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
            ++WGTLLGACR H  + L E++ + L+    ++ G Y +LSNI+AA G+W  VA VR  
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           MK++  +K  G SS+EV+N+VHEF   D  HPKS +IY+M+  +   LK  G+  +
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQ 356



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 123/256 (48%), Gaps = 41/256 (16%)

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M E+ +VS  +MI    K G + EAR LFD + ERDA+ WN ++DGYA+ G  N    LF
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 238 EKI------PHR---------------------------------NIVSWSTMVWGYSKD 258
            ++      P+                                  N+   ++++  YSK 
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +E A+L+F+R+  K +V W  ++ GYA  G +++A RL+ +M   G +P D T I +L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 319 AACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKD 376
            AC+ +GL+  G K   S+ ++Y  +        +V++  + G L+ A  +   M   +D
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 377 LVSWNAMLYGLAMHGQ 392
            V W  +L    +HG 
Sbjct: 241 PVLWGTLLGACRLHGN 256



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 46/286 (16%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F+ +++ D   +N +I    Q+ L  +   +F  M    V  +  T   +L AC     
Sbjct: 28  LFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRPNEVTVLAVLSACGQTGA 87

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
               + +H+ I   G   ++ V  SLID YSKCG   +  A+ +F  +  +D+V+WNSM+
Sbjct: 88  LETGRWVHSYIENNGIGINVRVGTSLIDMYSKCG--SLEDARLVFERISNKDVVAWNSMV 145

Query: 191 AGLVKGGELSEARRLFDEM----------------------------------------P 210
            G    G   +A RLF EM                                         
Sbjct: 146 VGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGWKFFYSMKDEYGI 205

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           E     +  +++   +AG +  A+EL + +   ++ V W T++      G++ + + + +
Sbjct: 206 EPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAE 265

Query: 270 RMPAKTLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + ++ L     + ++ + YA  G  +  AR+   M+E+G + + G
Sbjct: 266 YLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEPG 311


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 199/627 (31%), Positives = 315/627 (50%), Gaps = 82/627 (13%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFL 104
           R P  A  L+++ A   ++  A   F+ +     D  L+N ++ A  + SL A A  VF 
Sbjct: 90  RAPSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFH 149

Query: 105 DMQEKGVF-TDNFTYPFLLKACNGKNWF---HLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
            +   G    D++++  L+ A    +     H  Q+ H  + K G    + V N+LI  Y
Sbjct: 150 ALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQL-HCSVLKSGAAAVLSVSNALIALY 208

Query: 161 SKCG--------------------------VVG------VSLAKKLFMSMGERDIVSWNS 188
            KC                           VVG      V+ A+ +F  +  +  V WN+
Sbjct: 209 MKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNA 268

Query: 189 MIAGLVKGGELSEARRLFDEM--------------------------------------- 209
           MI+G V+ G  ++A  LF  M                                       
Sbjct: 269 MISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQ 328

Query: 210 ----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
               PE      N ++  Y+K G++ +A  +F+ +  +++VSW+T++ GY   G ++ A 
Sbjct: 329 PNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAV 388

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +F  MP K  + W +++SGY   G++++A +L++QM    +KP D T    +AAC E G
Sbjct: 389 EVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELG 448

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++HA + +  F+ + +  NAL+ MYAKCG++++A  VF  M   D VSWNAM+ 
Sbjct: 449 ALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMIS 508

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
            L  HG G +AL LF +M  EG  PD+ +F+ +L AC HAG +D+G  YF SM+RD+GI 
Sbjct: 509 ALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGIS 568

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P  +HY  +IDLLGRSGR+ EA  L+++MP EP   IW  +L  CR +  +E      D 
Sbjct: 569 PGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQ 628

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L R+     G Y +LSN ++A G W   A VR  M+    +K  G S +EV +++H F V
Sbjct: 629 LFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLV 688

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            D  HP+++++YQ +  +G  ++ +G+
Sbjct: 689 GDTKHPEAQEVYQFLEVIGARMRKLGY 715



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 37/220 (16%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   +QL A +++   +        L++  A C  +  A  VF  + + D   +N +I A
Sbjct: 450 LKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISA 509

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  +F  M  +G+  D  ++  +L ACN           HA +   G+   
Sbjct: 510 LGQHGHGREALELFDQMVAEGIDPDRISFLTILTACN-----------HAGLVDEGF--- 555

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
                     Y +      S+ +   +S GE     +  +I  L + G + EAR L   M
Sbjct: 556 ---------HYFE------SMKRDFGISPGED---HYARLIDLLGRSGRIGEARDLIKTM 597

Query: 210 P-ERDAVSWNTILDGYAKAGEMNL----AFELFEKIPHRN 244
           P E     W  IL G    G+M      A +LF  IP  +
Sbjct: 598 PFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHD 637


>gi|147862014|emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 200/620 (32%), Positives = 317/620 (51%), Gaps = 48/620 (7%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L + +QL   II L  ++ P + PKL++  +    +  A  +  +        +N LI
Sbjct: 188 KSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHPFPWNLLI 247

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            + V+N    +A   +  M +KG+  DNFTYP +LKAC  +      + +H  I      
Sbjct: 248 SSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHESINASRIK 307

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             + V N+LI  Y KCG VG+  A+ LF  + ERD VSWNSMI+     G  +EA  LF 
Sbjct: 308 WSLIVHNALISMYGKCGKVGI--ARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFG 365

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSW----------- 248
            M     E + + WNTI  GY + G    A EL  ++     H + V+            
Sbjct: 366 SMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVALIIGLGACSHIG 425

Query: 249 ------------------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
                                   ++++  YS+  D++ A LLF  M AK+L+ W  IIS
Sbjct: 426 DAKLGKEIHSFAIRSCFGEVDTVKNSLITMYSRCKDLKHAYLLFQLMEAKSLISWNSIIS 485

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR-FK 343
           G      ++EA+ L  +M  +G++P+  T+ S+L  CA    L  G + H  + +   FK
Sbjct: 486 GCCHMDRSEEASFLLREMLLSGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFK 545

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  + NALVDMYA+ G +  A  VF+ + ++D +++ +M+ G  M G+G+ AL LF  M
Sbjct: 546 DHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEM 605

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
            +    PD  T + VL AC+H+G + +G   F  M   YG+ P +EH+ CM DL GR+G 
Sbjct: 606 NNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGL 665

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L +A  ++++MP +P   +W TL+GACR H   E+ E   + L+ +K  +PG Y +++N+
Sbjct: 666 LNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGYYVLIANM 725

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +AA G WNK+A VR  M+    +K  G + V+V      F V D  +  +++IY ++  L
Sbjct: 726 YAAAGCWNKLAKVRXFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEIYPLLEGL 785

Query: 584 GKDLKPVGHAAKLSAEIGEG 603
              +K  G+ +  S + G G
Sbjct: 786 TMVIKEAGYIS--SEDFGSG 803



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+L++C +   L  G ++H  I    F+ +  +   LV  Y+    L +A  +       
Sbjct: 179 SLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNIL 238

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
               WN ++     +G  +KAL  + +M  +G  PD +T+  VL AC     +  G +  
Sbjct: 239 HPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVH 298

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            S+         + H   +I + G+ G++  A  L   +P E +A+ W +++     + +
Sbjct: 299 ESINASRIKWSLIVH-NALISMYGKCGKVGIARDLFDKIP-ERDAVSWNSMISV---YAS 353

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTRAQKPS-- 549
           + +  E  +    +   D     ++ N  A     TG++     +  QM+K  +   S  
Sbjct: 354 MGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKXGSHLDSVA 413

Query: 550 -----GASS----VEVDNEVHEFSV 565
                GA S     ++  E+H F++
Sbjct: 414 LIIGLGACSHIGDAKLGKEIHSFAI 438


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 187/562 (33%), Positives = 305/562 (54%), Gaps = 30/562 (5%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI-----RACVQNSLNAQAF 100
           +RD +++ +L+       Q   A ++   IQ P + L+++L+     R  +   L+  ++
Sbjct: 34  RRDLFLS-RLLRRCTAATQFRYARRLLCQIQTPSIQLWDSLVGHFSGRVTLNRRLSFLSY 92

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKAC---NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           R    M+  GV     T+P LLKA       N F      HA I K G+  D+FV NSLI
Sbjct: 93  R---QMRRNGVVPSRHTFPPLLKAVFKLRDANPFQF----HAHILKFGFDSDLFVRNSLI 145

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
             YS CG+       ++F    ++D+VSW +MI G V+     EA   F EM +R  V+ 
Sbjct: 146 SGYSNCGLF--EFGSRVFDGTEDKDVVSWTAMIDGFVRNDSSLEAMTYFVEM-KRSGVAA 202

Query: 218 N-----TILDGYAKAGEMNLA-----FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           N     ++L    KA ++        F L       ++   S++V  Y K G  + A+ +
Sbjct: 203 NEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIGSSLVDMYGKCGCYDDAQKV 262

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MP++ +V WT +I+GY +    ++   ++++M ++ + P++ TL S+L+ACA  G L
Sbjct: 263 FDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSDVAPNEKTLSSVLSACAHVGAL 322

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G +VH  + K   + NT V   L+D YAKCG L+ A+ VF  + +K++ +W AM+ G 
Sbjct: 323 HRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAILVFERLREKNVYTWTAMINGF 382

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A HG    A+ LF  M      P++ TF+ VL AC H G +++G + F SM+  + + P+
Sbjct: 383 AAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGGLVEEGRRLFLSMKERFNLEPK 442

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            +HY CM+DL GR G L+EA  L++ MP+EP   +WG L G+C  H   EL +     +I
Sbjct: 443 ADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGALFGSCLIHKDYELGKYAASRVI 502

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
           +L+ S  G YT+L+N+++ + +W+ VA VR QMK  +  K  G S +EV  ++HEF   D
Sbjct: 503 KLQPSHSGRYTLLANLYSESQNWDDVARVRKQMKDQQVVKSPGCSWIEVKGKLHEFIAFD 562

Query: 568 QLHP-KSEQIYQMINTLGKDLK 588
              P +S+ +Y+ ++ +G  ++
Sbjct: 563 DKKPLESDDLYKTLDNVGVQMR 584



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 181/374 (48%), Gaps = 19/374 (5%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q  A I+K     D ++   LIS  + C       +VF+  +D DV  +  +I   V+N 
Sbjct: 124 QFHAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRND 183

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG-DIFVP 153
            + +A   F++M+  GV  +  T   +LKA          + IH    + G    D+F+ 
Sbjct: 184 SSLEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDVRFGRSIHGFYLEAGRVRCDVFIG 243

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           +SL+D Y KCG      A+K+F  M  R++V+W ++IAG V+G    +   +F+EM + D
Sbjct: 244 SSLVDMYGKCGC--YDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKSD 301

Query: 214 AV----SWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAK 265
                 + +++L   A  G ++    +   +       N    +T++  Y+K G +E A 
Sbjct: 302 VAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEAI 361

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           L+F+R+  K +  WT +I+G+A  G A  A  L+  M  + + P++ T I +L+ACA  G
Sbjct: 362 LVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHGG 421

Query: 326 LLGLGMKVHASINKYRF----KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL-VSW 380
           L+  G ++  S+ K RF    K +   C  +VD++ + G L+ A ++   M  +     W
Sbjct: 422 LVEEGRRLFLSM-KERFNLEPKADHYAC--MVDLFGRKGLLEEAKALIERMPMEPTNAVW 478

Query: 381 NAMLYGLAMHGQGE 394
            A+     +H   E
Sbjct: 479 GALFGSCLIHKDYE 492


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 204/622 (32%), Positives = 315/622 (50%), Gaps = 56/622 (9%)

Query: 24  LHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLI---SSLALCRQMGLAIKVFNDIQD 77
           L+ C NL    Q KQL A  I L  +    + PKL+   SS +L       I V +DI +
Sbjct: 48  LYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLAD-AHTITVNSDIVN 106

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           P    +N LI + V N L+ +A   + +M  KGV  DNFTYP +LKAC  K      + +
Sbjct: 107 PLP--WNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGREV 164

Query: 138 HALIYKC-GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           H  I    G+  +++V NSL+  Y K G +    A++LF  M ERD VSWN +I+     
Sbjct: 165 HESINAAYGHRWNLYVHNSLVSMYGKFGELDA--ARRLFNQMPERDAVSWNGIISNYASR 222

Query: 197 GELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI------------ 240
           G   EA  LF+EM     E + ++WNTI  G  +      A EL  ++            
Sbjct: 223 GLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDIDLDPVAM 282

Query: 241 -------PHRNIVSWSTMVWG--------------------YSKDGDMEMAKLLFDRMPA 273
                   H   +   T++                      YS+  D+  A +LF  +  
Sbjct: 283 IIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMYSRCKDLRHADILFKSIKT 342

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           K+L  W  ++SGY     ++EA+ L+ +M  +G++P+  T+ SIL  CA    L  G + 
Sbjct: 343 KSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILPHCARVANLQQGKEF 402

Query: 334 HASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           H  I +   F+    + N+LV+MYA+ G + +A  VF+ + ++D V++ +++ G  + G+
Sbjct: 403 HCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSLIAGYGIQGE 462

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG 452
           G+ AL LF  M      PD+ T V VL AC+H+G + +G   F  M   YGI+P VEH+ 
Sbjct: 463 GKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYGIVPAVEHFS 522

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
           CM+DL GR+G L +A +++ SMP  P   +W TL+GACR H   E+ E   + L+ +K  
Sbjct: 523 CMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAAEKLLEMKPE 582

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
           +PG Y +++N+ AA G W+K+A VR  M+    +K  G + V+V +    F V D     
Sbjct: 583 NPGYYVLIANMHAAAGRWSKLAEVRTYMRDLGVRKAPGCTWVDVGSGFSPFVVGDTSKHN 642

Query: 573 SEQIYQMINTLGKDLKPVGHAA 594
           S  +Y+++  L   +K  G+ A
Sbjct: 643 SNDLYELLEGLTDLMKDAGYVA 664



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 100/233 (42%), Gaps = 21/233 (9%)

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           ++ S+L +C     L  G ++HA      F+ +  +   LV  Y+    L +A ++    
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
              + + WN ++     +G   +AL  +  M  +G  PD +T+  VL AC     +D G 
Sbjct: 103 DIVNPLPWNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKLDLDFGR 162

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG--AC 490
           +   S+   YG    +  +  ++ + G+ G L  A RL   MP E +A+ W  ++   A 
Sbjct: 163 EVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMP-ERDAVSWNGIISNYAS 221

Query: 491 RK--HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           R     A EL EE     +RL G++    T           WN +A   +Q +
Sbjct: 222 RGLWKEAFELFEE-----MRLAGAEVNIIT-----------WNTIAGGCVQTR 258


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/558 (33%), Positives = 297/558 (53%), Gaps = 10/558 (1%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110
           +A  LI S      +G A  +F+++ + DV  +  +I      + +  A+ VF +M  + 
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
           +  + FT   +LKAC G       +++H L  K G  G I+V N+L+D Y+ C  V +  
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC-CVSMDD 163

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKG----GELSEARRLFDEMPERDAVSWNTILDGYAK 226
           A  +F  +  ++ VSW ++IAG        G L   R++  E  E +  S++  +     
Sbjct: 164 ACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTS 223

Query: 227 AGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
            G      +L   +       N+   ++++  Y +      A   F  M  + L+ W  +
Sbjct: 224 IGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNTL 283

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342
           I+GY E+    E+  ++  ME  G  P+  T  SI+AACA    L  G ++H  I +   
Sbjct: 284 IAGY-ERSNPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCGQQIHGRIIRRGL 342

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
             N  + NAL+DMY+KCG++ ++  VF GM+++DLVSW AM+ G   HG GE+A+ LF +
Sbjct: 343 DGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVELFDK 402

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M   G  PD+  F+ +L AC+HAG +D+G++YF  M  DY I P  E YGC++DLLGR+G
Sbjct: 403 MVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLGRAG 462

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
           +++EA  L++SMP +P+  +WG  LGAC+ H    L +     ++ L+    G Y MLSN
Sbjct: 463 KVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVMLSN 522

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
           I+AA G W + A +R  MK+   +K +G S VEV N V+ F V D++  K E IYQ++  
Sbjct: 523 IYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGNHVYSFVVGDEVGSKIEGIYQVLEN 582

Query: 583 LGKDLKPVGHAAKLSAEI 600
           L   +K  G+   L   I
Sbjct: 583 LIGHMKESGYVPDLDCLI 600



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 132/288 (45%), Gaps = 6/288 (2%)

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           IP    V  +T++  Y   G +  A+ LFD MP + +V WT++I+GY        A  ++
Sbjct: 38  IPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVF 97

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M    L P+  T+ S+L AC     L  G  VH    K+       V NAL+DMYA C
Sbjct: 98  CEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATC 157

Query: 360 G-SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
             S+D+A  VF G+  K+ VSW  ++ G      G   L +F +M  E    + ++F   
Sbjct: 158 CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIA 217

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           + ACT  G    G Q   ++ + +G    +     ++D+  R     EA R    M  + 
Sbjct: 218 VRACTSIGSHTFGEQLHAAVTK-HGFESNLPVMNSILDMYCRCSCFSEANRYFYEMN-QR 275

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           + I W TL+    + N  E     +  ++  +G  P  +T  ++I AA
Sbjct: 276 DLITWNTLIAGYERSNPTE--SLYVFSMMESEGFSPNCFT-FTSIMAA 320


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/575 (32%), Positives = 312/575 (54%), Gaps = 14/575 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +++   ++K     D ++   LI   +    + LA  +F+ I++ DV  ++T+IR+  ++
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            L  +A  +  DM    V         +           L + +HA + + G  G   VP
Sbjct: 204 GLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVP 263

Query: 154 --NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
              +LID Y KC    ++ A+++F  + +  I+SW +MIA  +    L+E  RLF +M  
Sbjct: 264 LCTALIDMYVKCE--NLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLG 321

Query: 212 R----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDME 262
                + ++  +++     AG + L  +L      RN     +V  +  +  Y K GD+ 
Sbjct: 322 EGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVR 380

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ +FD   +K L+ W+ +IS YA+     EA  ++  M   G++P++ T++S+L  CA
Sbjct: 381 SARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICA 440

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           ++G L +G  +H+ I+K   K +  +  + VDMYA CG +D A  +F   T +D+  WNA
Sbjct: 441 KAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNA 500

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G AMHG GE AL LF  M+  G  P+  TF+G L AC+H+G + +G + F+ M  ++
Sbjct: 501 MISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEF 560

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           G  P+VEHYGCM+DLLGR+G L EA  L++SMP+ PN  ++G+ L AC+ H  ++L E  
Sbjct: 561 GFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWA 620

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
               + L+    G   ++SNI+A+   W  VA +R  MK     K  G SS+EV+  +HE
Sbjct: 621 AKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHE 680

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           F + D+ HP ++++Y+MI+ + + L+  G+   +S
Sbjct: 681 FIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVS 715



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 160/577 (27%), Positives = 259/577 (44%), Gaps = 61/577 (10%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQ---RDPYIAPKLISSLALCRQMGLAIKVFNDIQDP 78
           Q LH   NLN+T+QL    IK       R P  A +  SS A       AI  F      
Sbjct: 50  QELHI--NLNETQQLHGHFIKTSSNCSYRVPLAALESYSSNA-------AIHSF------ 94

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
                  LI + ++N+  A A +++  M+      DNF  P +LKAC     F L Q +H
Sbjct: 95  -------LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVH 147

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             + K G+ GD+FV N+LI  YS+ G   ++LA+ LF  +  +D+VSW++MI    + G 
Sbjct: 148 GFVVKNGFHGDVFVCNALIMMYSEVG--SLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 199 LSEARRLFDEM-------PERDAVSWNTILDGYA--KAGEMNLAFELFE-KIPHRNIVSW 248
           L EA  L  +M        E   +S   +L   A  K G+   A+ +   K     +   
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLC 265

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + ++  Y K  ++  A+ +FD +   +++ WT +I+ Y       E  RL+ +M   G+ 
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMF 325

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P++ T++S++  C  +G L LG  +HA   +  F  +  +  A +DMY KCG + +A SV
Sbjct: 326 PNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSV 385

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+    KDL+ W+AM+   A +   ++A  +F  M   G  P++ T V +L  C  AG +
Sbjct: 386 FDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSL 445

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           + G ++ +S     GI   +      +D+    G +  A RL      + +  +W  ++ 
Sbjct: 446 EMG-KWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAE-ATDRDISMWNAMIS 503

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
               H   E A E+ + +  L G  P + T +  + A +         RL  K       
Sbjct: 504 GFAMHGHGEAALELFEEMEAL-GVTPNDITFIGALHACSHSGLLQEGKRLFHKM------ 556

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
                      VHEF       PK E    M++ LG+
Sbjct: 557 -----------VHEFG----FTPKVEHYGCMVDLLGR 578


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 193/570 (33%), Positives = 312/570 (54%), Gaps = 16/570 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+    +KL L     ++  LI+     R++GLA  VFN++ + D+  +N++I    Q+
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFV 152
            L  +A  +F+ +   G+  D++T   +LKA +       L + IH    K     D FV
Sbjct: 402 DLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFV 461

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
             +LID+YS+   +  +   ++       D+V+WN+M++G  +  +  +   LF  M ++
Sbjct: 462 STALIDAYSRNRCMKEA---EVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQ 518

Query: 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS------W--STMVWGYSKDGDMEMA 264
              S +  L    K      A    +++    I S      W  S ++  Y K GDM  A
Sbjct: 519 GERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAA 578

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           +  FD +P    V WT +ISG  E G  + A  ++ QM   G+ PD+ T+ ++  A +  
Sbjct: 579 QFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCL 638

Query: 325 GLLGLGMKVHASINKYRFKCNTN--VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
             L  G ++HA  N  +  C ++  V  +LVDMYAKCGS+D+A  +F  +   ++ +WNA
Sbjct: 639 TALEQGRQIHA--NALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNA 696

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ML GLA HG+G++AL LF +M+  G  PDK TF+GVL AC+H+G + +  +Y  SM RDY
Sbjct: 697 MLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDY 756

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P++EHY C+ D LGR+G +KEA  L+ SM +E +A ++ TLL ACR     E  + V
Sbjct: 757 GIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRV 816

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ L+  D   Y +LSN++AA   W+++   R  MK  + +K  G S +EV N++H 
Sbjct: 817 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHL 876

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           F V D+ +P++E IY+ +  + +D+K  G+
Sbjct: 877 FVVDDRSNPQTELIYKKVKDMIRDIKQEGY 906



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 125/481 (25%), Positives = 225/481 (46%), Gaps = 47/481 (9%)

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
            + F+DM E  +  D  T+  +L      +   L Q +H +  K G    + V NSLI+ 
Sbjct: 307 LKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINM 366

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAV 215
           Y  C +  + LA+ +F +M ERD++SWNS+IAG+ +     EA  LF ++     + D  
Sbjct: 367 Y--CKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHY 424

Query: 216 SWNTILDGYAKAGE-MNLAFELFEKIPHRNIVSWS----TMVWGYSKDGDMEMAKLLFDR 270
           +  ++L   +   E ++L+ ++       N V+ S     ++  YS++  M+ A++LF R
Sbjct: 425 TMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR 484

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
                LV W  ++SGY +     +   L+  M + G + DD TL ++L  C     +  G
Sbjct: 485 NNFD-LVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQG 543

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            +VHA   K  +  +  V + ++DMY KCG +  A   F+ +   D V+W  ++ G   +
Sbjct: 544 KQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIEN 603

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCA---------------------CTHAGFID 429
           G+ E+AL +FS+M+  G  PD++T   +  A                     CT   F+ 
Sbjct: 604 GEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVG 663

Query: 430 KGVQYFY----SMERDYGILPQVE-----HYGCMIDLLGRSGRLKEALRL---VQSMPVE 477
             +   Y    S++  Y +  ++E      +  M+  L + G  KEAL+L   ++S+ ++
Sbjct: 664 TSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIK 723

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP--GNYTMLSNIFAATGDWNKVAN 535
           P+ + +  +L AC     V  A + +  + R  G  P   +Y+ L++     G   +  N
Sbjct: 724 PDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAEN 783

Query: 536 V 536
           +
Sbjct: 784 L 784



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 179/398 (44%), Gaps = 45/398 (11%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           A+I+ L+   + ++   LIS  + C  +  A +VF+ + + D+  +N+++ A  Q+S   
Sbjct: 70  ARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGV 129

Query: 98  -----QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
                +AF +F  +++  V+T   T   +LK C    +    +  H    K G  GD FV
Sbjct: 130 VENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFV 189

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
             +L++ Y                                 +K G++ E R LF+EMP R
Sbjct: 190 AGALVNIY---------------------------------LKFGKVKEGRVLFEEMPYR 216

Query: 213 DAVSWNTILDGYAKAG------EMNLAFELFEKIPHRNIVSWSTMVWGY-SKDGDMEMAK 265
           D V WN +L  Y + G      +++ AF      P+   +   + + G  S+ G ++  +
Sbjct: 217 DVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFE 276

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
              D      ++    I+SGY   G      + +  M E+ L+ D  T I +LA      
Sbjct: 277 NGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLD 336

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L LG +VH    K        V N+L++MY K   +  A +VFN M+++DL+SWN+++ 
Sbjct: 337 SLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIA 396

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
           G+A      +A+ LF ++   G  PD YT   VL A +
Sbjct: 397 GIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 35/308 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +NQ KQ+ A  IK     D +++  ++     C  M  A   F+ I  PD   + TLI  
Sbjct: 540 INQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISG 599

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
           C++N    +A  VF  M+  GV  D FT   L KA +        + IHA   K     D
Sbjct: 600 CIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSD 659

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
            FV  SL+D Y+KCG   +  A  LF  +   +I +WN+M+ GL + GE  EA +LF +M
Sbjct: 660 PFVGTSLVDMYAKCG--SIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQM 717

Query: 210 P----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
                + D V++  +L   + +G ++ A++    + HR+          Y    ++E   
Sbjct: 718 ESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSM-HRD----------YGIKPEIEHYS 766

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            L D +                  G+ KEA  L D M    ++       ++LAAC   G
Sbjct: 767 CLADAL---------------GRAGLVKEAENLIDSM---SMEASASMYRTLLAACRVQG 808

Query: 326 LLGLGMKV 333
               G +V
Sbjct: 809 DTETGKRV 816



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 161/398 (40%), Gaps = 91/398 (22%)

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE-----MNLAF 234
           ER +V  N++I+   K G L+ ARR+FD+MPERD VSWN+IL  YA++ E     +  AF
Sbjct: 80  ERFLV--NNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENVKEAF 137

Query: 235 ELFEKIPHRNIVSWSTMVWG---------------------------------------- 254
            LF +I  +++V  S M                                           
Sbjct: 138 LLF-RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNI 196

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G ++  ++LF+ MP + +V W +++  Y E G  +EA  L      +GL P++ TL
Sbjct: 197 YLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
             +     +    G        +  +    N N  +A+                      
Sbjct: 257 RLLSRISGDDSEAG-------QVKSFE---NGNDASAV---------------------- 284

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
            +++S N +L G    GQ    L  F  M +     D+ TF+ VL        +  G Q 
Sbjct: 285 SEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALG-QQ 343

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
            + M    G+   +     +I++  +  ++  A  +  +M  E + I W +++    + +
Sbjct: 344 VHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMS-ERDLISWNSVIAGIAQSD 402

Query: 495 ----AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
               AV L  ++L C     G  P +YTM S + AA+ 
Sbjct: 403 LEVEAVCLFMQLLRC-----GLKPDHYTMTSVLKAASS 435



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 11/209 (5%)

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           RDA+S + ++ G      + LA E   + P R +V+   ++  YSK G +  A+ +FD+M
Sbjct: 54  RDAISTSDLMLGKCTHARI-LALE---ENPERFLVN--NLISMYSKCGSLTYARRVFDKM 107

Query: 272 PAKTLVPWTIIISGYAEKGM-----AKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           P + LV W  I++ YA+         KEA  L+  + +  +     TL  +L  C  SG 
Sbjct: 108 PERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGY 167

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           +      H    K     +  V  ALV++Y K G +     +F  M  +D+V WN ML  
Sbjct: 168 VCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKA 227

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
               G  E+A+ L S     G  P++ T 
Sbjct: 228 YLEMGFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 17/220 (7%)

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L LG   HA I          + N L+ MY+KCGSL  A  VF+ M ++DLVSWN++L  
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 387 LAMHGQG-----EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            A   +G     ++A  LF  ++ +     + T   +L  C H+G++    + F+     
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYV-CASESFHGYACK 180

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
            G+       G ++++  + G++KE   L + MP   + ++W  +L A   +  +   EE
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA---YLEMGFKEE 236

Query: 502 VLD--CLIRLKGSDPGNYT--MLSNIFAATGDWNKVANVR 537
            +D        G  P   T  +LS I   +GD ++   V+
Sbjct: 237 AIDLSSAFHTSGLHPNEITLRLLSRI---SGDDSEAGQVK 273


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 192/598 (32%), Positives = 317/598 (53%), Gaps = 81/598 (13%)

Query: 13  KRRLLEEKL-QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI-- 69
           +R LL   L   L  C NLNQ KQ+   +++  L +  YI  KLI +L    ++G+ +  
Sbjct: 45  QRELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLT---KLGVPMDP 101

Query: 70  ---KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
              +V   +Q  +  L+  +IR         +A  ++  M+++ +   +FT+  LLKAC 
Sbjct: 102 YPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACG 161

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                +L +  HA  ++   F  ++V N++ID Y KC                       
Sbjct: 162 SMGDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKC----------------------- 198

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
                     G +  AR++FDEMPERD +SW  ++  YA+ G M  A +LFE +P +++V
Sbjct: 199 ----------GSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMV 248

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY----AEKGMAKEAARLYDQM 302
           +W+ MV G++++   + A   FDRM    +    + ++GY    A+ G +K A R     
Sbjct: 249 AWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIA 308

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           +++G  P D  +I                                  +AL+DMY+KCG++
Sbjct: 309 QKSGYSPSDHVVIG---------------------------------SALIDMYSKCGNV 335

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCA 421
           + A++VF  M  K++ S+++M+ GLA HG+ ++AL LF  M  +    P+  TFVG L A
Sbjct: 336 EEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTA 395

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H+G +D+G Q F SM + +G+ P  +HY CM+DLLGR+GRL+EAL L+++M VEP+  
Sbjct: 396 CSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGG 455

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +WG LLGACR HN  ++AE   + L  L+    GNY +LSN++++ GDW  V +VR  +K
Sbjct: 456 VWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIK 515

Query: 542 KTRAQK-PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           +   +K P+ +  V+ + ++H+F   +  HP S++I   +  L + L  +G+   LS+
Sbjct: 516 EKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSS 573


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 246/379 (64%), Gaps = 1/379 (0%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N+++D Y K G   +A +LF+++  R++VSW+T++ GY   G ++ A+++FD M  K LV
Sbjct: 166 NSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLV 225

Query: 278 PWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
            W+ +ISGYA      +A  L+ QM+ E GL P+D TL+S+L+ACA  G L LG  +H  
Sbjct: 226 SWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF 285

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I + + +    + NAL DMYAKCG +  A  VF+ M ++D++SW+ ++ GLAM+G   +A
Sbjct: 286 IRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEA 345

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
              F+ M ++G  P+  +F+G+L ACTHAG +DKG++YF  M + YGI P++EHYGC++D
Sbjct: 346 FNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVD 405

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL R+GRL +A  L+ SMP++PN I+WG LLG CR +   E  E V+  ++ L  +  G+
Sbjct: 406 LLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGS 465

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
              L+N++A+ G  +  A+ RL+M+  ++ K  G S +E++N V+EF + D  HP+S +I
Sbjct: 466 LVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRI 525

Query: 577 YQMINTLGKDLKPVGHAAK 595
           Y MI  L   +K  G+  K
Sbjct: 526 YSMIRELKWKMKVAGYKPK 544



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 122/422 (28%), Positives = 202/422 (47%), Gaps = 52/422 (12%)

Query: 24  LHKCKNLNQTKQLF---AQIIKLDLQR-DP-YIAPKLISSLALCRQMGLAIKVFND-IQD 77
           L +C      +QLF   AQII   +   DP  IA K I   +    +  ++ +FN  +  
Sbjct: 28  LLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVLIFNHFLSF 87

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLD--MQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           P++  YN L++A  Q++        F +  +       D +T+  +LKAC G       Q
Sbjct: 88  PNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQ 147

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            +H  + K G   ++FV NSL+D Y K G     +A+KLF  M  RD+VSWN++I+G   
Sbjct: 148 KVHCFVTKYGCESNLFVRNSLVDLYFKVGCN--CIAQKLFDEMVVRDVVSWNTLISGYCF 205

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWST 250
            G + +AR +FD M E++ VSW+T++ GYA+  +   A ELF ++ H      N V+  +
Sbjct: 206 SGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVS 265

Query: 251 MVWG-----------------------------------YSKDGDMEMAKLLFDRMPAKT 275
           ++                                     Y+K G +  AK +F  M  + 
Sbjct: 266 VLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERD 325

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           ++ W+III G A  G A EA   + +M E GL+P+D + + +L AC  +GL+  G++   
Sbjct: 326 VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFD 385

Query: 336 SINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQG 393
            + + Y           +VD+ ++ G LD A S+ N M  + +++ W A+L G  ++   
Sbjct: 386 MMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDA 445

Query: 394 EK 395
           E+
Sbjct: 446 ER 447



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 92/211 (43%), Gaps = 34/211 (16%)

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           PD+ T  S+L ACA    +  G KVH  + KY  + N  V N+LVD+Y K G    A  +
Sbjct: 125 PDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKL 184

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEK-------------------------------AL 397
           F+ M  +D+VSWN ++ G    G  +K                               A+
Sbjct: 185 FDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAI 244

Query: 398 GLFSRMKDE-GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
            LF +M+ E G  P+  T V VL AC H G +D G ++ +   R   I   +     + D
Sbjct: 245 ELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLG-KWIHRFIRRNKIEVGLFLGNALAD 303

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +  + G + EA  +   M  E + I W  ++
Sbjct: 304 MYAKCGCVLEAKGVFHEMH-ERDVISWSIII 333



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 142/348 (40%), Gaps = 57/348 (16%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
            ++LF +++     RD      LIS       +  A  VF+ + + ++  ++T+I    +
Sbjct: 181 AQKLFDEMV----VRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYAR 236

Query: 93  NSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           N   A A  +F  MQ E G+  ++ T   +L AC       L + IH  I +      +F
Sbjct: 237 NEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLF 296

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           + N+L D Y+KCG V                                  EA+ +F EM E
Sbjct: 297 LGNALADMYAKCGCV---------------------------------LEAKGVFHEMHE 323

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLL 267
           RD +SW+ I+ G A  G  N AF  F ++       N +S+  ++   +  G ++     
Sbjct: 324 RDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEY 383

Query: 268 FDRMP-----AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           FD MP        +  +  ++   +  G   +A  L + M    ++P+     ++L  C 
Sbjct: 384 FDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMP---MQPNVIVWGALLGGCR 440

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALV---DMYAKCGSLDNAMS 367
                  G +V   I     + ++N   +LV   ++YA  G LD+A S
Sbjct: 441 IYKDAERGERVVWRI----LELDSNHSGSLVYLANVYASMGRLDDAAS 484



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 5/148 (3%)

Query: 360 GSLDNAMSVFNG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSR--MKDEGFGPDKYTFV 416
           G+L +++ +FN  ++  ++ ++NA+L   + H      +  F+   +      PD+YTF 
Sbjct: 72  GNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFT 131

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            VL AC     + +G Q  +     YG    +     ++DL  + G    A +L   M V
Sbjct: 132 SVLKACAGLAQVLEG-QKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVV 190

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLD 504
             + + W TL+        V+ A  V D
Sbjct: 191 R-DVVSWNTLISGYCFSGMVDKARMVFD 217


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 300/556 (53%), Gaps = 22/556 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDP 78
           L  L KCK + + KQ+ + +IK  + ++     +LI   A      +  A  VF+     
Sbjct: 9   LSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVFDQTDQL 68

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            V+++N++I+          A  ++ +MQ KG + D+FT+PF+LK C+  +     Q +H
Sbjct: 69  TVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVH 128

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             I K G+  D++  + L++ Y  CG +   L  K+F  + + ++V+W S+IAG V   +
Sbjct: 129 NRIVKTGFELDVYTSSCLLNMYVSCGDLNSGL--KVFEFIPKWNVVAWTSLIAGFVNNDQ 186

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYA----------KAGEM------NLAFELFEKIPH 242
             EA RLF +M E + V  N I    A            G++       L  + F     
Sbjct: 187 PKEALRLFKDM-ENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSR 245

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
            N++  + ++  Y+K G +  A+ LFD+MP + LV W  +IS +++ G   EA RL+  M
Sbjct: 246 FNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDM 305

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           E AG  P+  T +S++ AC        G  +HA + K  F     +  AL+DMYAK G  
Sbjct: 306 ELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIGTALMDMYAKSGDA 365

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCA 421
           D A+ +F+ + KKD+++W  M+ GLA+ G+G++AL +F RM++E    PD+ T++ VL A
Sbjct: 366 DTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWA 425

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H G +++G ++F SM   YGI P +EHYGCMIDLL R+G  +EA  L+  MP +PNA 
Sbjct: 426 CSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMPTQPNAT 485

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           I  ++L  C  +  V LA  V   ++ LK S  G Y +LSNI A   +W ++   R  +K
Sbjct: 486 ILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKLARDILK 545

Query: 542 KTRAQKPSGASSVEVD 557
             +  K  G S VE++
Sbjct: 546 HKKIGKTLGNSFVEMN 561


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 189/575 (32%), Positives = 315/575 (54%), Gaps = 12/575 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +Q+   I KL       +   LIS   + R++  A K+F+++ D DV  +N++I  
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG- 148
            V+N L+ +   +F+ M   GV  D  T   +  AC       L +++H+   K      
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++   N+L+D YSKCG   ++ A ++F  M E+ +VSW SMI G V+ G    A +LFDE
Sbjct: 387 EVRFNNTLLDMYSKCG--DLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDE 444

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS----TMVWGYSKDGD 260
           M  R    D  +  +IL+  A  G +     + + I   N+ + S     +   Y+K G 
Sbjct: 445 MKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGS 504

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           M+ A  +F  M  K ++ W  +I GY +  +  EA  L+ +M+    KPD  T+  IL A
Sbjct: 505 MKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPA 563

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA    L  G ++H    +  +  +  V NA+VDMY KCG L  A S+F+ +  KDLVSW
Sbjct: 564 CASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSW 623

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
             M+ G  MHG G +A+  F++M+  G  PD+ +F+ +L AC+H+G +D+G + F  M++
Sbjct: 624 TVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKK 683

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +  I P +EHY CM+DLL R+G L +A + +++MP++P+A IWG LL  CR H+ V+LAE
Sbjct: 684 ECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAE 743

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
           +V + +  L+  + G Y +L+NI+A    W +V  +R ++ +   +K  G S +E+  ++
Sbjct: 744 KVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKI 803

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           + F   D   P++++I  ++  L   +K  G++ K
Sbjct: 804 NIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPK 838



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 144/523 (27%), Positives = 234/523 (44%), Gaps = 83/523 (15%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  +  KL+     C  +     VF+ + +  + L+N +I     +    ++  +F  M 
Sbjct: 184 DGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQML 243

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           E G+  +++T+  +LK           + +H LI K G+     V NSLI  Y     VG
Sbjct: 244 ELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFY----FVG 299

Query: 168 --VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---------------- 209
             V  A+KLF  + +RD++SWNSMI+G VK G       +F +M                
Sbjct: 300 RKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVF 359

Query: 210 ------------------------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                                    +R+    NT+LD Y+K G++N A  +FE++  + +
Sbjct: 360 VACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTV 419

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           VSW++M+ GY ++G  + A  LFD M ++                               
Sbjct: 420 VSWTSMITGYVREGLSDGAIKLFDEMKSR------------------------------- 448

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+ PD   + SIL ACA +G L  G  VH  I +   + N+ V NAL DMYAKCGS+ +A
Sbjct: 449 GVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF+ M KKD++SWN M+ G   +    +AL LF+ M+ E   PD  T   +L AC   
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVACILPACASL 567

Query: 426 GFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
             +DKG + + Y++   Y     V +   ++D+  + G L  A  L   +P   + + W 
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVTN--AVVDMYVKCGLLVLARSLFDMIP-NKDLVSWT 624

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            ++     H     A    +  +R+ G +P   + +S ++A +
Sbjct: 625 VMIAGYGMHGYGSEAINTFN-QMRMTGIEPDEVSFISILYACS 666



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 140/282 (49%), Gaps = 4/282 (1%)

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           +V+ Y K GD++  +++FD++    +  W ++IS Y+  G   E+  L+ QM E G+KP+
Sbjct: 191 LVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPN 250

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T  SIL   A    +  G +VH  I K  F     V N+L+  Y     +  A  +F+
Sbjct: 251 SYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFD 310

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            +T +D++SWN+M+ G   +G  ++ + +F +M   G   D  T V V  AC + G +  
Sbjct: 311 ELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLL 370

Query: 431 G-VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           G V + YS+ +   +  +V     ++D+  + G L  A+R+ + M  E   + W +++  
Sbjct: 371 GKVLHSYSI-KAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD-EKTVVSWTSMITG 428

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
             +    + A ++ D  ++ +G  P  Y + S + A   + N
Sbjct: 429 YVREGLSDGAIKLFD-EMKSRGVVPDVYAVTSILNACAINGN 469



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 145/301 (48%), Gaps = 15/301 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL   K +   I + +L+ + +++  L    A C  M  A  VF+ ++  DV  +NT+I 
Sbjct: 469 NLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIG 528

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              +NSL  +A  +F +MQ +    D  T   +L AC         + IH    + GY  
Sbjct: 529 GYTKNSLPNEALTLFAEMQRESK-PDGTTVACILPACASLAALDKGREIHGYALRNGYSE 587

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D +V N+++D Y KCG+  + LA+ LF  +  +D+VSW  MIAG    G  SEA   F++
Sbjct: 588 DKYVTNAVVDMYVKCGL--LVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQ 645

Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVWGYSKDG 259
           M     E D VS+ +IL   + +G ++  +++F  +        N+  ++ MV   ++ G
Sbjct: 646 MRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTG 705

Query: 260 DMEMAKLLFDRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           ++  A      MP K     W  ++ G       K A ++ +++ E  L+P++     +L
Sbjct: 706 NLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFE--LEPENTGYYVLL 763

Query: 319 A 319
           A
Sbjct: 764 A 764


>gi|356528072|ref|XP_003532629.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 191/533 (35%), Positives = 301/533 (56%), Gaps = 26/533 (4%)

Query: 39  QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98
           ++ +L  QRD      +IS  A   +M  A+K+FN + + +    N LI   + N     
Sbjct: 125 RLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLLNGDVDS 184

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP--NSL 156
           A   F  M E    + +     L++  NG+     + M   ++ +CG   D  V   N+L
Sbjct: 185 AVDFFRTMPEHYSTSLSALISGLVR--NGE-----LDMAAGILCECGNGDDDLVHAYNTL 237

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGE-------------RDIVSWNSMIAGLVKGGELSEAR 203
           I  Y + G   V  A++LF  + +             R++VSWNSM+   VK G++  AR
Sbjct: 238 IAGYGQRG--HVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAGDIVSAR 295

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            LFD M E+D  SWNT++ GY +   M  A +LF ++P  +++SW+ +V G+++ GD+ +
Sbjct: 296 ELFDRMVEQDTCSWNTMISGYVQISNMEEASKLFREMPIPDVLSWNLIVSGFAQKGDLNL 355

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           AK  F+RMP K L+ W  II+GY +    K A +L+ +M+  G +PD  TL S+++ C  
Sbjct: 356 AKDFFERMPLKNLISWNSIIAGYEKNEDYKGAIQLFSRMQFEGERPDRHTLSSVMSVCTG 415

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
              L LG ++H  + K     ++ + N+L+ MY++CG++ +A +VFN +   KD+++WNA
Sbjct: 416 LVNLYLGKQIHQLVTKIVIP-DSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNA 474

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+ G A HG   +AL LF  MK     P   TF+ V+ AC HAG +++G + F SM  DY
Sbjct: 475 MIGGYASHGLAAEALELFKLMKRLKIHPTYITFISVMNACAHAGLVEEGRRQFKSMINDY 534

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI  +VEH+  ++D+LGR G+L+EA+ L+ +MP +P+  +WG LL ACR HN VELA   
Sbjct: 535 GIERRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLSACRVHNNVELALVA 594

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
            D LIRL+      Y +L NI+A  G W+   +VR+ M++   +K +G S V+
Sbjct: 595 ADALIRLEPESSAPYVLLYNIYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 647



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 177/377 (46%), Gaps = 32/377 (8%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           +S A+ LF SM  RD V+WNSMI G V   E++ AR+LFDEMP RD VSWN I+ GY   
Sbjct: 55  LSEARALFDSMKHRDTVTWNSMITGYVHRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 114

Query: 228 GEMNLAFE---LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
                  E   LFE +P R+ VSW+T++ GY+K+G M+ A  LF+ MP +  V    +I+
Sbjct: 115 RGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALIT 174

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344
           G+   G    A   +  M E        +L ++++    +G L +   +           
Sbjct: 175 GFLLNGDVDSAVDFFRTMPEHY----STSLSALISGLVRNGELDMAAGILCECGNGDDDL 230

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT-------------KKDLVSWNAMLYGLAMHG 391
             +  N L+  Y + G ++ A  +F+G+              ++++VSWN+M+      G
Sbjct: 231 -VHAYNTLIAGYGQRGHVEEARRLFDGIPDDRGDGDEGQRRFRRNVVSWNSMMMCYVKAG 289

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
               A  LF RM ++    D  ++  ++        +++  + F  M      +P V  +
Sbjct: 290 DIVSARELFDRMVEQ----DTCSWNTMISGYVQISNMEEASKLFREMP-----IPDVLSW 340

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             ++    + G L  A    + MP++ N I W +++    K+   + A ++    ++ +G
Sbjct: 341 NLIVSGFAQKGDLNLAKDFFERMPLK-NLISWNSIIAGYEKNEDYKGAIQLF-SRMQFEG 398

Query: 512 SDPGNYTMLSNIFAATG 528
             P  +T+ S +   TG
Sbjct: 399 ERPDRHTLSSVMSVCTG 415



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 74/163 (45%), Gaps = 17/163 (10%)

Query: 334 HAS---INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
           HAS    +KY      N  N  +    + G L  A ++F+ M  +D V+WN+M+ G    
Sbjct: 24  HASASPTHKYNNSSPLNRSNKKISNLIRSGRLSEARALFDSMKHRDTVTWNSMITGYVHR 83

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE- 449
            +  +A  LF  M             G   +C  + F+++G        R + ++PQ + 
Sbjct: 84  REIARARQLFDEMPRRDVVSWNLIVSGYF-SCRGSRFVEEG-------RRLFELMPQRDC 135

Query: 450 -HYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLL 487
             +  +I    ++GR+ +AL+L  +MP    V  NA+I G LL
Sbjct: 136 VSWNTVISGYAKNGRMDQALKLFNAMPERNAVSSNALITGFLL 178


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 304/568 (53%), Gaps = 45/568 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F++I  PD    +TLI A   + L+ +A +++  +QE+G+  D   +    KAC  
Sbjct: 117 ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 176

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                 V+ +H    +CG   D+FV N+LI +Y KC  V    A+++F  +  RD+VSW 
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCV--EGARRVFDDLVVRDVVSWT 234

Query: 188 SMIAGLVKGGELSEARRLFDEM------PERDAVS------------------------- 216
           S+ +  VK G   +   +F EM      P    VS                         
Sbjct: 235 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 294

Query: 217 --------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
                    + ++  YAK   +  A  +F+ +PHR++VSW+ ++  Y K+ + E    LF
Sbjct: 295 GMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 354

Query: 269 DRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            +M    +      W  +I G  E G ++EA  ++ +M++ G KP++ T+ SIL AC+ S
Sbjct: 355 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFS 414

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L +G ++H  + ++    +     AL+ MYAKCG L+ + +VF+ M +KD+V+WN M+
Sbjct: 415 ENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMI 474

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
              AMHG G++AL LF +M      P+  TF GVL  C+H+  +++GVQ F SM RD+ +
Sbjct: 475 IANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLV 534

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P   HY C++D+  R+GRL EA + +Q MP+EP A  WG LL ACR +  VELA+    
Sbjct: 535 EPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAK 594

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L  ++ ++PGNY  L NI      W++ + VR+ MK+    K  G S ++V N+VH F 
Sbjct: 595 KLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFV 654

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V D+ + +S++IY  ++ L + +K  G+
Sbjct: 655 VGDKSNIESDKIYNFLDELVEKMKMAGY 682



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 2/239 (0%)

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GD   A+ LFD +P       + +IS     G++ EA ++Y  ++E G+KPD    ++  
Sbjct: 112 GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 171

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA SG      +VH    +     +  V NAL+  Y KC  ++ A  VF+ +  +D+V
Sbjct: 172 KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 231

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW ++       G   K + +F  M   G  P+  T   +L AC     +  G +  +  
Sbjct: 232 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSG-KEIHGF 290

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
              +G++  +     ++ L  +   ++EA  +   MP   + + W  +L A  K+   E
Sbjct: 291 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP-HRDVVSWNGVLTAYFKNKEYE 348



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 122/254 (48%), Gaps = 15/254 (5%)

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
           +   L +K+  D    D   +N +I  C++N  + +A  +F  MQ+ G   +  T   +L
Sbjct: 349 KGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSIL 408

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
            AC+      + + IH  +++    GD+    +L+  Y+KCG   ++L++ +F  M  +D
Sbjct: 409 PACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCG--DLNLSRNVFDMMRRKD 466

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFE 238
           +V+WN+MI      G   EA  LFD+M     + ++V++  +L G + +  +    ++F 
Sbjct: 467 VVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFN 526

Query: 239 KIPHRNIVS-----WSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWTIIISG---YAEK 289
            +   ++V      +S +V  YS+ G +  A      MP + T   W  +++    Y   
Sbjct: 527 SMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNV 586

Query: 290 GMAKEAARLYDQME 303
            +AK +A+   ++E
Sbjct: 587 ELAKISAKKLFEIE 600



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L   K++    ++  +  + ++   L+S  A C  +  A  VF+ +   DV  +N ++
Sbjct: 279 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 338

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQMIHALIYKCG 145
            A  +N    + F +FL M   GV  D  T+  ++  C  NG++    V+M   +  K G
Sbjct: 339 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE-EAVEMFRKM-QKMG 396

Query: 146 YFGDIFVPNSLID--SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           +  +    +S++   S+S+   +G  +   +F      D+ S  +++    K G+L+ +R
Sbjct: 397 FKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSR 456

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDG 259
            +FD M  +D V+WNT++   A  G    A  LF+K+       N V+++ ++ G S   
Sbjct: 457 NVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSR 516

Query: 260 DMEMAKLLFDRMPAKTLVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            +E    +F+ M    LV      ++ ++  Y+  G   EA +    M    ++P     
Sbjct: 517 LVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP---MEPTASAW 573

Query: 315 ISILAAC 321
            ++LAAC
Sbjct: 574 GALLAAC 580



 Score = 42.0 bits (97), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+ +    G  + A  +F+ + + D  + + ++  L  HG   +A+ ++S +++ G  PD
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
              F+    AC  +G   + V+  +      G++  V     +I   G+   ++ A R+ 
Sbjct: 164 MPVFLAAAKACAVSGDALR-VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 472 QSMPVEPNAIIWGTLLGAC 490
             + V  + + W T L +C
Sbjct: 223 DDLVVR-DVVSW-TSLSSC 239


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 188/575 (32%), Positives = 312/575 (54%), Gaps = 13/575 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L    ++  QI++   + D ++   LI+    C  +  A   F  ++  DV  +  +I
Sbjct: 119 ESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMI 178

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            ACVQ+   A A  ++  MQ  GV  +  T   +  A    N+    + ++ L+      
Sbjct: 179 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVME 238

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+ V NS ++ +   G++G   A++LF  M +RD+V+WN +I   V+     EA RLF 
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGD--ARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFG 296

Query: 208 EMPERDAVSWNTI-----LDGYAKAGEM---NLAFELFEKIPH-RNIVSWSTMVWGYSKD 258
            + ++D V  N I     L+ Y     +    +  EL ++  + R+ V  + ++  Y + 
Sbjct: 297 RL-QQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRC 355

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
                A  +F  M +K ++ WT++   YA+ G  KEA +L+ +M+  G +P   TL+++L
Sbjct: 356 EAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVL 415

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
             CA    L  G ++H+ I + RF+    V  AL++MY KCG +  AMSVF  M K+D++
Sbjct: 416 DTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDIL 475

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            WN+ML   A HG  ++ L LF++M+ +G   D  +FV VL A +H+G +  G QYF +M
Sbjct: 476 VWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAM 535

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-VEPNAIIWGTLLGACRKHNAVE 497
            +D+ I P  E YGC++DLLGR+GR++EA+ +V  +    P+ I+W TLLGACR HN  +
Sbjct: 536 LQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGACRTHNKTD 595

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
            A+   + ++    S  G Y +LSN++AA GDW+ V  +R  M+    +K  G SS+E+ 
Sbjct: 596 QAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSRGVKKEPGRSSIEIL 655

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           N VHEF   D+ HP+   IY  ++ L  +++  G+
Sbjct: 656 NRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGY 690



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 227/494 (45%), Gaps = 38/494 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ     KN++  +++   +     +++  +   LI   A C  +  A +VF  ++  DV
Sbjct: 11  LQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDV 70

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  +I    Q     +A  +F  MQE+ V     TY  +L AC           IH  
Sbjct: 71  FAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQ 130

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + G+ GD+FV  +LI+ Y+KCG   V  A   F  +  RD+VSW +MIA  V+  + +
Sbjct: 131 ILQQGFEGDVFVGTALINMYNKCG--SVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFA 188

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            AR L+  M + D V  N I             + +F      N +S    V+G    G 
Sbjct: 189 LARWLYRRM-QLDGVVPNKI-----------TLYTVFNAYGDPNYLSEGKFVYGLVSSGV 236

Query: 261 MEM--------------------AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           ME                     A+ LF+ M  + +V W I+I+ Y +     EA RL+ 
Sbjct: 237 MESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFG 296

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           ++++ G+K +D T + +L        L  G  +H  + +  +  +  V  AL+ +Y +C 
Sbjct: 297 RLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCE 356

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
           +   A  +F  M  KD+++W  M    A +G  ++AL LF  M+ EG  P   T V VL 
Sbjct: 357 APGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 416

Query: 421 ACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            C H   + KG Q + + +E  + +   VE    +I++ G+ G++ EA+ + + M  + +
Sbjct: 417 TCAHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMA-KRD 473

Query: 480 AIIWGTLLGACRKH 493
            ++W ++LGA  +H
Sbjct: 474 ILVWNSMLGAYAQH 487



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 111/227 (48%), Gaps = 4/227 (1%)

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           KPD    +++L  C+ +  +  G +VH  +    F+ N  VC  L+ MYA+CGS+  A  
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF  + +KD+ +W  M+      G  ++ALG+F +M++E   P K T+V +L AC     
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +  G++  +      G    V     +I++  + G ++ A    + +    + + W  ++
Sbjct: 121 LKDGME-IHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE-HRDVVSWTAMI 178

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
            AC +H+   LA  +    ++L G  P   T L  +F A GD N ++
Sbjct: 179 AACVQHDQFALARWLYR-RMQLDGVVPNKIT-LYTVFNAYGDPNYLS 223


>gi|68611229|emb|CAE03043.3| OSJNBa0084A10.18 [Oryza sativa Japonica Group]
          Length = 729

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 185/553 (33%), Positives = 297/553 (53%), Gaps = 41/553 (7%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-------- 106
           L++  A C ++  A ++FN I D +V  +N ++    +N +  +A  +F DM        
Sbjct: 102 LLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRARELF-DMMPWRDDVS 160

Query: 107 --------------QEKGVFTDNFTYPFLLKACNG--KNWFHLVQMIHALIYKCGYFGDI 150
                         +E     D+   P     CN     +  L  M  A +     FG +
Sbjct: 161 WLTMISGYIKRKHVREARELFDSMPSP-PTSVCNALLSGYVELGYMRAAEVL----FGQM 215

Query: 151 FVPNS-----LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              N      +I  Y++ G +G+  A++LF  M E+D++S  +++ G ++ G +  A ++
Sbjct: 216 QTRNPVSWNVMITGYARAGSMGI--AQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKV 273

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           F +MP RD V+WNT++DG+ +   ++ A +LF ++P R+ +SW+ ++ GY + GDM+ A 
Sbjct: 274 FKDMPHRDTVAWNTMMDGFVRNDRLDDALKLFSEMPDRDQISWNAILQGYVQQGDMDSAN 333

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
             F R P K  + W  +ISGY ++G    A  L  +M   GLKPD  TL  +++ CA   
Sbjct: 334 AWFRRAPNKDAISWNTLISGYKDEG----ALSLLSEMIRGGLKPDQATLSVVISICASLV 389

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            LG G  VH    K  F+ +  V ++L+ MY+KCG +  A  VF  + ++D V+WNAM+ 
Sbjct: 390 SLGCGKMVHLWAIKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIA 449

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
             A HG  ++AL +F  M   GF PD  TF+ +L AC H G++ +G  +F SM+ D+ ++
Sbjct: 450 TYAYHGLADEALKVFDMMTKAGFRPDHATFLSILSACAHKGYLYEGCYHFRSMQEDWNLV 509

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P+ +HY CM+DLLGRSG + +A    + +P +     W TL   C  H  ++L E +   
Sbjct: 510 PRSDHYSCMVDLLGRSGFIHQAYDFTRRIPSDHRTTAWETLFSVCNSHGEIQLGEIIARN 569

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           +++ + SD G YT+LSNI+AA   W+  A+VR  MK+   +K +G S +E+  EV  FS 
Sbjct: 570 VLKARPSDGGMYTLLSNIYAAKEMWSSAASVRGFMKERGLKKETGCSWIELKGEVVTFSS 629

Query: 566 CDQLHPKSEQIYQ 578
            D  HP  EQI Q
Sbjct: 630 NDSNHPLIEQICQ 642



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/341 (31%), Positives = 173/341 (50%), Gaps = 53/341 (15%)

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD+F  N+ I+ + +     V+ A+++F  M ER++ +WN M++GL++   L+EAR++FD
Sbjct: 32  GDVFQSNTAINEHFR--AGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFD 89

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP R++VSW  +L GYA+ G +  A ELF +IP RN+VSW+ MV GY+++G ++ A+ L
Sbjct: 90  AMPVRNSVSWAALLTGYARCGRVAEARELFNRIPDRNVVSWNAMVSGYARNGMVKRAREL 149

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD MP +  V W  +ISGY ++   +EA  L+D M                         
Sbjct: 150 FDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSP---------------------- 187

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
                             T+VCNAL+  Y + G +  A  +F  M  ++ VSWN M+ G 
Sbjct: 188 -----------------PTSVCNALLSGYVELGYMRAAEVLFGQMQTRNPVSWNVMITGY 230

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILP 446
           A  G    ++G+  R+ DE    D  +   ++      G +D   + F  M  RD     
Sbjct: 231 ARAG----SMGIAQRLFDEMPEKDVLSRTAIMRGYLQNGSVDAAWKVFKDMPHRD----- 281

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
               +  M+D   R+ RL +AL+L   MP + + I W  +L
Sbjct: 282 -TVAWNTMMDGFVRNDRLDDALKLFSEMP-DRDQISWNAIL 320



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 220/481 (45%), Gaps = 62/481 (12%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA---CNGKNWFHLVQ 135
           DV   NT I    +    A A RVF +M E+ VFT N     L++       +  F  + 
Sbjct: 33  DVFQSNTAINEHFRAGRVAAARRVFDEMSERNVFTWNCMVSGLIRNRMLAEARKVFDAMP 92

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           + +++ +            +L+  Y++CG   V+ A++LF  + +R++VSWN+M++G  +
Sbjct: 93  VRNSVSWA-----------ALLTGYARCGR--VAEARELFNRIPDRNVVSWNAMVSGYAR 139

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
            G +  AR LFD MP RD VSW T++ GY K   +  A ELF+ +P       + ++ GY
Sbjct: 140 NGMVKRARELFDMMPWRDDVSWLTMISGYIKRKHVREARELFDSMPSPPTSVCNALLSGY 199

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            + G M  A++LF +M  +  V W ++I+GYA  G    A RL+D+M E     D  +  
Sbjct: 200 VELGYMRAAEVLFGQMQTRNPVSWNVMITGYARAGSMGIAQRLFDEMPEK----DVLSRT 255

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           +I+    ++G +    KV   +       +T   N ++D + +   LD+A+ +F+ M  +
Sbjct: 256 AIMRGYLQNGSVDAAWKVFKDMPHR----DTVAWNTMMDGFVRNDRLDDALKLFSEMPDR 311

Query: 376 DLVSWNAMLYGLAMHG---------------------------QGEKALGLFSRMKDEGF 408
           D +SWNA+L G    G                           + E AL L S M   G 
Sbjct: 312 DQISWNAILQGYVQQGDMDSANAWFRRAPNKDAISWNTLISGYKDEGALSLLSEMIRGGL 371

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH----YGCMIDLLGRSGRL 464
            PD+ T   V+  C  A  +  G      M   + I    EH       +I +  + G +
Sbjct: 372 KPDQATLSVVISIC--ASLVSLGCG---KMVHLWAIKTGFEHDALVMSSLISMYSKCGLI 426

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
            EA ++ + + ++ + + W  ++     H   + A +V D + +  G  P + T LS + 
Sbjct: 427 SEASQVFE-LILQRDTVTWNAMIATYAYHGLADEALKVFDMMTK-AGFRPDHATFLSILS 484

Query: 525 A 525
           A
Sbjct: 485 A 485



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 100/278 (35%), Gaps = 71/278 (25%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           IK   + D  +   LIS  + C  +  A +VF  I   D   +N +I     + L  +A 
Sbjct: 402 IKTGFEHDALVMSSLISMYSKCGLISEASQVFELILQRDTVTWNAMIATYAYHGLADEAL 461

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI-----FVPNS 155
           +VF  M + G   D+ T+  +L AC  K +         L   C +F  +      VP S
Sbjct: 462 KVFDMMTKAGFRPDHATFLSILSACAHKGY---------LYEGCYHFRSMQEDWNLVPRS 512

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-ERDA 214
             D YS                           M+  L + G + +A      +P +   
Sbjct: 513 --DHYS--------------------------CMVDLLGRSGFIHQAYDFTRRIPSDHRT 544

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
            +W T+       GE+ L      +I  RN++           DG M             
Sbjct: 545 TAWETLFSVCNSHGEIQLG-----EIIARNVLK------ARPSDGGM------------- 580

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
               +T++ + YA K M   AA +   M+E GLK + G
Sbjct: 581 ----YTLLSNIYAAKEMWSSAASVRGFMKERGLKKETG 614


>gi|242059647|ref|XP_002458969.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
 gi|241930944|gb|EES04089.1| hypothetical protein SORBIDRAFT_03g043550 [Sorghum bicolor]
          Length = 530

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 170/449 (37%), Positives = 263/449 (58%), Gaps = 3/449 (0%)

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF-VPNSLIDSYSKCGVVGVSLAK 172
           D+FT PF L A        L   +HA+ ++ G       V N+L+D Y+KC     S A 
Sbjct: 81  DHFTLPFALNAAASLRLLPLGASLHAVAFRLGLLPLRLPVANALVDLYAKCE--EFSAAH 138

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL 232
                +   D VS+NS++    +   +  A  LF  M  R  VSWN ++  Y  AG++  
Sbjct: 139 AALADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMRSRTQVSWNAMVVLYVSAGDLVS 198

Query: 233 AFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
           A  +F+++P R+  SWS ++ GY K G ++ A+ LFD+MP+K LV  T +I+GYA+ G  
Sbjct: 199 ARRVFDEMPTRDTASWSVLIAGYCKGGLVQNARELFDKMPSKNLVARTAMINGYAQTGQP 258

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
           K A  L+  +E AG++PD  T++ +++A ++ G   L   V A +++ + + N  V  AL
Sbjct: 259 KAALALFRDLEAAGIEPDGATMVGVISAVSQIGSTELAGWVGAYVDRKKIERNVKVLTAL 318

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VDM+AKCG+++ A+S F  + + D   + A++ GLA HG  + AL +F RM+ +   PD 
Sbjct: 319 VDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEKLALSVFERMQVQAVKPDP 378

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
            TFVGVL AC+H G +DKG++Y+ +M RDYGI+ + +HY C+ID+LGR+GR++EA  +VQ
Sbjct: 379 ITFVGVLTACSHTGLVDKGLEYWEAMVRDYGIVRRADHYACVIDMLGRAGRIEEAFEMVQ 438

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
           +MP+ P+    G LL AC+ +  VE+AE V + L  L+  + GNY +LSNI+A    W +
Sbjct: 439 TMPMGPHPGALGALLSACKTYENVEIAEIVANKLFELEPWNTGNYILLSNIYAGKELWEE 498

Query: 533 VANVRLQMKKTRAQKPSGASSVEVDNEVH 561
              VR  M+     K  G++  E     H
Sbjct: 499 AERVRSLMRTKLPFKNPGSTWFEDRQREH 527



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 93/255 (36%), Gaps = 46/255 (18%)

Query: 310 DDGTLISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           D  TL   L A A   LL LG  +HA +           V NALVD+YAKC     A + 
Sbjct: 81  DHFTLPFALNAAASLRLLPLGASLHAVAFRLGLLPLRLPVANALVDLYAKCEEFSAAHAA 140

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
              +   D VS+N++L   A +     A  LF+ M+                        
Sbjct: 141 LADIPAPDAVSFNSLLCAHARNASVRPAESLFAAMRSRT--------------------- 179

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
                             QV  +  M+ L   +G L  A R+   MP    A  W  L+ 
Sbjct: 180 ------------------QVS-WNAMVVLYVSAGDLVSARRVFDEMPTRDTA-SWSVLIA 219

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
              K   V+ A E+ D   ++   +    T + N +A TG   K A    +  +    +P
Sbjct: 220 GYCKGGLVQNARELFD---KMPSKNLVARTAMINGYAQTGQ-PKAALALFRDLEAAGIEP 275

Query: 549 SGASSVEVDNEVHEF 563
            GA+ V V + V + 
Sbjct: 276 DGATMVGVISAVSQI 290



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 48/260 (18%), Positives = 103/260 (39%), Gaps = 39/260 (15%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F+ +   ++     +I    Q      A  +F D++  G+  D  T   ++ A + 
Sbjct: 230 ARELFDKMPSKNLVARTAMINGYAQTGQPKAALALFRDLEAAGIEPDGATMVGVISAVSQ 289

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   + A + +     ++ V  +L+D ++KCG +  +L+   F  + + D   + 
Sbjct: 290 IGSTELAGWVGAYVDRKKIERNVKVLTALVDMHAKCGNIEQALSA--FREIPQPDAYPYT 347

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++I+GL   G    A  +F+ M     + D +++  +L   +  G ++   E        
Sbjct: 348 ALISGLATHGHEKLALSVFERMQVQAVKPDPITFVGVLTACSHTGLVDKGLEY------- 400

Query: 244 NIVSWSTMV--WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
               W  MV  +G  +  D                  +  +I      G  +EA   ++ 
Sbjct: 401 ----WEAMVRDYGIVRRADH-----------------YACVIDMLGRAGRIEEA---FEM 436

Query: 302 MEEAGLKPDDGTLISILAAC 321
           ++   + P  G L ++L+AC
Sbjct: 437 VQTMPMGPHPGALGALLSAC 456



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 40/89 (44%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           A + +  ++R+  +   L+   A C  +  A+  F +I  PD + Y  LI     +    
Sbjct: 301 AYVDRKKIERNVKVLTALVDMHAKCGNIEQALSAFREIPQPDAYPYTALISGLATHGHEK 360

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
            A  VF  MQ + V  D  T+  +L AC+
Sbjct: 361 LALSVFERMQVQAVKPDPITFVGVLTACS 389


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 192/597 (32%), Positives = 313/597 (52%), Gaps = 80/597 (13%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL----- 67
           K  L+   +  L  C NLNQ KQ+   +++  L +  YI  KLI +L    ++G+     
Sbjct: 45  KELLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLT---KLGVPMDPY 101

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +V   +Q  +  L+  +IR         +A  ++  M+++ +   +FT+  LLKAC  
Sbjct: 102 ARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGT 161

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
               +L +  HA  ++   F  ++V N++ID Y KC  +                     
Sbjct: 162 MKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDC------------------- 202

Query: 188 SMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS 247
                         AR++FDEMPERD +SW  ++  YA+ G M  A ELFE +P +++V+
Sbjct: 203 --------------ARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVA 248

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY----AEKGMAKEAARLYDQME 303
           W+ MV G++++   + A   FDRM    +    + ++GY    A+ G +K A R     +
Sbjct: 249 WTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQ 308

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
           ++G  P D  +I                                  +AL+DMY+KCG+++
Sbjct: 309 KSGYSPSDHVVIG---------------------------------SALIDMYSKCGNVE 335

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCAC 422
            A++VF  M  K++ ++++M+ GLA HG+ ++AL LF  M  +    P+  TFVG L AC
Sbjct: 336 EAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMAC 395

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H+G +D+G Q F SM + +G+ P  +HY CM+DLLGR+GRL+EAL L+++M VEP+  +
Sbjct: 396 SHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGV 455

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG LLGACR HN  E+AE   + L  L+    GNY +LSN++A+ GDW  V  VR  +K+
Sbjct: 456 WGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKE 515

Query: 543 TRAQK-PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
              +K P+ +  V+ + ++H+F   +  HP S +I   +  L + L  +G+   LS+
Sbjct: 516 KGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSS 572


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/542 (33%), Positives = 298/542 (54%), Gaps = 11/542 (2%)

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
           R++  A K+F+++ D DV  +N++I   V N L+ +   +F  M   G+ TD  T   ++
Sbjct: 199 RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVV 258

Query: 123 KACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD 182
             C+      L + +H    K  +  ++ + N L+D YSK G   ++ A ++F +MGER 
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSG--NLNSAIQVFETMGERS 316

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE 238
           +VSW SMIAG  + G    + RLF EM +     D  +  TIL   A  G +    ++  
Sbjct: 317 VVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHN 376

Query: 239 KIPHRNIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            I    + S     + ++  Y+K G M  A  +F  M  K +V W  +I GY++  +  E
Sbjct: 377 YIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNE 436

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L+ +M+    KP+  T+  IL ACA    L  G ++H  I +  F  + +V NALVD
Sbjct: 437 ALNLFVEMQYNS-KPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVD 495

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCG+L  A  +F+ + +KDLVSW  M+ G  MHG G +A+  F+ M++ G  PD+ +
Sbjct: 496 MYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS 555

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F+ +L AC+H+G +D+G  +F  M  +  I P+ EHY C++DLL R+G L +A + ++ M
Sbjct: 556 FISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMM 615

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P+EP+A IWG LL  CR ++ V+LAE+V + +  L+  + G Y +L+NI+A    W +V 
Sbjct: 616 PIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVK 675

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
            +R ++ +   +K  G S +E+  +VH F   D  HP + +I  ++      +K  GH  
Sbjct: 676 KLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFP 735

Query: 595 KL 596
           K+
Sbjct: 736 KM 737



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/515 (26%), Positives = 230/515 (44%), Gaps = 92/515 (17%)

Query: 68  AIKVFNDIQDPDVHL--YNTLIRAC-----VQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
           A+++ N    PD+ L  Y ++++ C     +Q+     +     D++  GV      + +
Sbjct: 87  AMELINQSPKPDLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMY 146

Query: 121 LLKAC----NGKNWFHLVQMIHALIYKC---GY--FGDIFVPNSLIDSYSKCGVVGVSLA 171
           +   C     G+  F  V      ++     GY   G+     SL     + G+  V  A
Sbjct: 147 V--TCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESA 204

Query: 172 KKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--------------------- 210
           +KLF  +G+RD++SWNSMI+G V  G   +   LF++M                      
Sbjct: 205 RKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNT 264

Query: 211 ------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
                              ++    N +LD Y+K+G +N A ++FE +  R++VSW++M+
Sbjct: 265 GMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMI 324

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            GY+++G  +M                               + RL+ +ME+ G+ PD  
Sbjct: 325 AGYAREGLSDM-------------------------------SVRLFHEMEKEGISPDIF 353

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T+ +IL ACA +GLL  G  VH  I + + + +  V NAL+DMYAKCGS+ +A SVF+ M
Sbjct: 354 TITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             KD+VSWN M+ G + +    +AL LF  M+     P+  T   +L AC     +++G 
Sbjct: 414 QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQ 472

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +    + R+ G          ++D+  + G L  A RL+  M  E + + W  ++     
Sbjct: 473 EIHGHILRN-GFSLDRHVANALVDMYLKCGALGLA-RLLFDMIPEKDLVSWTVMIAGYGM 530

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           H     A    +  +R  G +P   + +S ++A +
Sbjct: 531 HGYGSEAIAAFN-EMRNSGIEPDEVSFISILYACS 564



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 154/337 (45%), Gaps = 52/337 (15%)

Query: 24  LHKCKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LH C     L   K +   I +  +Q D +++  L+   A C  MG A  VF+++Q  D+
Sbjct: 359 LHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDI 418

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT+I    +NSL  +A  +F++MQ      ++ T   +L AC         Q IH  
Sbjct: 419 VSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACILPACASLAALERGQEIHGH 477

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + G+  D  V N+L+D Y KCG +G  LA+ LF  + E+D+VSW  MIAG    G  S
Sbjct: 478 ILRNGFSLDRHVANALVDMYLKCGALG--LARLLFDMIPEKDLVSWTVMIAGYGMHGYGS 535

Query: 201 EARRLFDEMP----ERDAVSWNTIL----------------------------------- 221
           EA   F+EM     E D VS+ +IL                                   
Sbjct: 536 EAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACI 595

Query: 222 -DGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEM----AKLLFDRMPAKT 275
            D  A+AG ++ A++  + +P   +   W  ++ G     D+++    A+ +F+  P  T
Sbjct: 596 VDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENT 655

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
              + ++ + YAE    +E  +L +++   GL+ + G
Sbjct: 656 GY-YVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPG 691



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/343 (20%), Positives = 145/343 (42%), Gaps = 62/343 (18%)

Query: 271 MPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +P++T+      + I I  + E G  + A  L +Q  +  L+    T  S+L  CA+   
Sbjct: 59  LPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKS 116

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL------------------------ 362
           +  G ++H+ I     + +  + + LV MY  CG L                        
Sbjct: 117 IQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNG 176

Query: 363 -------------------------DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
                                    ++A  +F+ +  +D++SWN+M+ G   +G  EK L
Sbjct: 177 YAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGL 236

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG-VQYFYSMERDYGILPQVEHYGCMID 456
            LF +M   G   D  T V V+  C++ G +  G   + Y+++  +G   ++    C++D
Sbjct: 237 DLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG--KELTLNNCLLD 294

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  +SG L  A+++ ++M  E + + W +++    +    +++  +   + + +G  P  
Sbjct: 295 MYSKSGNLNSAIQVFETMG-ERSVVSWTSMIAGYAREGLSDMSVRLFHEMEK-EGISPDI 352

Query: 517 YTMLSNIF--AATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           +T+ + +   A TG      +V   +K+ + Q     S+  +D
Sbjct: 353 FTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMD 395


>gi|21952815|dbj|BAC06231.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|125572862|gb|EAZ14377.1| hypothetical protein OsJ_04297 [Oryza sativa Japonica Group]
 gi|215697551|dbj|BAG91545.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 548

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 183/491 (37%), Positives = 272/491 (55%), Gaps = 44/491 (8%)

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG------------- 167
           LLKA   +    L + +HA   K     D  V  +L+  Y KCG++              
Sbjct: 61  LLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRN 120

Query: 168 ----------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP- 210
                           +  A+ LF  MG R  V+W ++I G    G+++E RR F+ MP 
Sbjct: 121 AVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPL 180

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
             ++ V+W   +  Y  AG+M  A ELF K+P RN   WS+MV G  K G+ + A+ +FD
Sbjct: 181 GMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFD 240

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           ++P + LV W  +I+GYA+ G  ++A   +  M +  +KPD+ T+  +L+ACA+ G L  
Sbjct: 241 KIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQ 300

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             KVH  I ++R + N  V N LVDM+AKCG L  A ++F+ M  ++   WN+M+  L+ 
Sbjct: 301 ARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSS 360

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HGQ  +A+ LFS+M+     P++ T + VL ACTH GF+D+G++ F   +  YG+   VE
Sbjct: 361 HGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFD-IYGVAAAVE 419

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE----EVLDC 505
           HYGC++DLLGRSGRL+EA  +V++M VEPN +IWG+LLGACR H   E++E    E+   
Sbjct: 420 HYGCLVDLLGRSGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQL 479

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
             R   ++   Y +LSNI A++  W +   +R +M      K  G SSVE+  E+ E  V
Sbjct: 480 HSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVEL--EITEHQV 537

Query: 566 C------DQLH 570
           C       QLH
Sbjct: 538 CAGSGTLSQLH 548



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  VF+ I   ++  +N LI    +     +A   F  M +  +  D FT   +L AC  
Sbjct: 235 AQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQ 294

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  + +H  I +     + FV N L+D ++KCG   ++ A+ +F +M  R+   WN
Sbjct: 295 LGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCG--DLAFARNIFDNMQWRNTECWN 352

Query: 188 SMIAGLVKGGELSEARRLFDEM 209
           SMI+ L   G+  EA RLF +M
Sbjct: 353 SMISALSSHGQSIEAIRLFSKM 374



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 279 WTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           W  +   YA     +EAA +Y ++        P    +I +L A A      LG  +HA 
Sbjct: 24  WANLAKVYASNSFLREAAIIYSKLLPHRTHHLP---LVIVLLKATASRADPVLGRALHAE 80

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             K     +  V   LV +Y KCG L +A  VF+GM  ++ V+ NAML G A  G    A
Sbjct: 81  AVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSA 140

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
             LF+ M          T+  ++      G + +  ++F +M      +  V  +   + 
Sbjct: 141 EALFAGMGSR----TPVTWATLIRGFAGKGDMAETRRWFEAMPLG---MQNVVTWTVAVQ 193

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
               +G ++ A  L   MP   NA +W +++    K    + A+ V D
Sbjct: 194 AYVAAGDMETARELFNKMPAR-NAFVWSSMVTGNFKAGNADEAQAVFD 240


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 307/619 (49%), Gaps = 73/619 (11%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L   +Q   K K L + KQL A +I        ++   L++  + C ++  A+K+F+ + 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMP 67

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             ++  +  +I    QNS  ++A R F  M+  G     F +   ++AC       + + 
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H L  K G   ++FV ++L D YSKCG                                
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGA------------------------------- 156

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI---------------- 240
             + +A ++F+EMP +D VSW  ++DGY+K GE   A   F+K+                
Sbjct: 157 --MFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 241 --------------PHRNIVSW---STMVWG------YSKDGDMEMAKLLFD-RMPAKTL 276
                          H ++V     S +  G      YSK GDME A  +F      + +
Sbjct: 215 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 274

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V +T +I GY E    ++   ++ ++   G++P++ T  S++ ACA    L  G ++HA 
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           + K  F  +  V + LVDMY KCG L+ A+  F+ +     ++WN+++     HG G+ A
Sbjct: 335 VMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           + +F RM D G  P+  TF+ +L  C+HAG +++G+ YFYSM++ YG++P  EHY C+ID
Sbjct: 395 IKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+GRLKEA   +  MP EPNA  W + LGACR H   E+ +   + L++L+  + G 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
             +LSNI+A    W  V +VR++M+    +K  G S V+V  + H F   D  HP+   I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAI 574

Query: 577 YQMINTLGKDLKPVGHAAK 595
           Y+ ++TL   +K  G+  +
Sbjct: 575 YEKLDTLLDQIKAAGYVPR 593



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 2/190 (1%)

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D   L  ++   A++  L  G ++HA +    +   T + N LV+MY+KCG LD+A+ +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           + M +++LVSW AM+ GL+ + +  +A+  F  M+  G  P ++ F   + AC   G I+
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G Q  + +   +GI  ++     + D+  + G + +A ++ + MP + + + W  ++  
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 490 CRKHNAVELA 499
             K    E A
Sbjct: 182 YSKIGEFEEA 191


>gi|296082839|emb|CBI22140.3| unnamed protein product [Vitis vinifera]
          Length = 428

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 169/424 (39%), Positives = 268/424 (63%), Gaps = 8/424 (1%)

Query: 137 IHALIYKCGYF--GD-IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           IH  + K G+   GD I+V  +L+D Y K G   + +A+K+F  M ER++VSWNSM+AG 
Sbjct: 6   IHGQVQKFGFSCGGDGIYVETALVDFYCKLG--DMEIARKMFDEMAERNVVSWNSMLAGY 63

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
           +K G++ +A  LF +MPER+  SWN ++ G+ + G+++ A   F+ +P +N VSW TM+ 
Sbjct: 64  LKAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMIS 123

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDD 311
           GYSK GD++ A  LFD++  K L+ +  +I+ YA+     EA  L++ M      ++PD+
Sbjct: 124 GYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDE 183

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL S+++AC++ G L  G  + + + +   + + ++  AL+D+YAKCGS+D A  +F+G
Sbjct: 184 MTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHG 243

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           + KKDLV++ AM+ G  ++G+   A+ LF  M D    P+  TF+G+L A  HAG +++G
Sbjct: 244 LRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEG 303

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
            + F SM++ Y ++P V+HYG M+DL GR+GRL+EAL L++SMP++P+A +WG LL ACR
Sbjct: 304 YRCFTSMKK-YNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACR 362

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            HN VE  E        L+    G  ++LSNI+A+   W+ V  +R   K+    K  G 
Sbjct: 363 LHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGC 422

Query: 552 SSVE 555
           S +E
Sbjct: 423 SWME 426



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 110/230 (47%), Gaps = 12/230 (5%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK--GVF 112
           +IS  + C  +  A ++F+ +   D+ L+N +I    QNS   +A  +F +M      V 
Sbjct: 121 MISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQ 180

Query: 113 TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
            D  T   ++ AC+          I + + + G   D  +  +L+D Y+KCG   +  A 
Sbjct: 181 PDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCG--SIDKAY 238

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAG 228
           +LF  + ++D+V++ +MI G    G+  +A +LFDEM +     +++++  +L  Y  AG
Sbjct: 239 ELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAG 298

Query: 229 EMNLAFELFEKIPHRNIV----SWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
            +   +  F  +   N+V     +  MV  + + G ++ A  L   MP +
Sbjct: 299 LVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQ 348



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 39/248 (15%)

Query: 330 GMKVHASINKYRFKCNTN---VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           G+ +H  + K+ F C  +   V  ALVD Y K G ++ A  +F+ M ++++VSWN+ML G
Sbjct: 3   GISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAG 62

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD----- 441
               G  EKA  LF +M +  F     ++  ++      G ID    +F +M +      
Sbjct: 63  YLKAGDMEKASSLFQQMPERNFA----SWNAMISGHVEFGDIDSARSFFDAMPQKNNVSW 118

Query: 442 ------YGILPQVEH---------------YGCMIDLLGRSGRLKEALRLVQSM-----P 475
                 Y     V+                +  MI    ++ R  EAL L  +M      
Sbjct: 119 MTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVN 178

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY-TMLSNIFAATGDWNKVA 534
           V+P+ +   +++ AC +   +     +   + RL     G+  T L +++A  G  +K  
Sbjct: 179 VQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAY 238

Query: 535 NVRLQMKK 542
            +   ++K
Sbjct: 239 ELFHGLRK 246


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 208/648 (32%), Positives = 314/648 (48%), Gaps = 81/648 (12%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND--IQDPDVHLY 83
           K   L+  +QLF +I     + D      ++S       + LA  VF +  +   D  +Y
Sbjct: 61  KSSELDYARQLFDEIS----EPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMY 116

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK--ACNGKNWFHLVQMIHALI 141
           N +I     N+    A  +F  M+ +G   D+FTY  +L   A    +    VQ  HA  
Sbjct: 117 NAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQ-FHAAA 175

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSL--AKKLFMSMGERD----------------- 182
            K G      V N+L+  YS+C      L  A+K+F  + E+D                 
Sbjct: 176 LKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCF 235

Query: 183 ---------------IVSWNSMIAGLVKGGELSEA----RRLFDEMPERDAVSW------ 217
                          +V++N+MI+G V  G   EA    RR+     E D  ++      
Sbjct: 236 DLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRA 295

Query: 218 ----------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                                       N+++  Y K G+ N A  +FEK+P +++VSW+
Sbjct: 296 CANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWN 355

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            ++ GY   G +  AKL+F  M  K ++ W I+ISG AE G  +E  +L+  M+  G +P
Sbjct: 356 ALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEP 415

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
            D      + +CA  G    G + HA + K  F  + +  NAL+ MYAKCG ++ A  VF
Sbjct: 416 CDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVF 475

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
             M   D VSWNA++  L  HG G +A+ ++  M  +G  PD+ TF+ VL AC+HAG +D
Sbjct: 476 RTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVD 535

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +G +YF SME  Y I P  +HY  +IDLL RSG+  EA  +++S+P +P A IW  LL  
Sbjct: 536 QGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSG 595

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPS 549
           CR H  +EL     D L  L     G Y +LSN++AATG W +VA VR  M+    +K  
Sbjct: 596 CRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEV 655

Query: 550 GASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             S +E++ +VH F V D  HP++E +Y+ +  LGK+++ +G+    S
Sbjct: 656 ACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTS 703



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 131/513 (25%), Positives = 218/513 (42%), Gaps = 123/513 (23%)

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
           +    L + +H  I   G+     + N LID Y  C    +  A++LF  + E D ++  
Sbjct: 27  RTSLQLARAVHGNIITFGFQPHAHILNRLIDVY--CKSSELDYARQLFDEISEPDKIART 84

Query: 188 SMIAGLVKGGELSEARRLFDEMP--ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           +M++G    G+++ AR +F+E P   RD V +N ++ G++   +   A  LF K+ H   
Sbjct: 85  TMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGF 144

Query: 246 ----VSWSTMVWG------------------------------------YSKDGD----M 261
                ++++++ G                                    YS+       +
Sbjct: 145 KPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLL 204

Query: 262 EMAKLLFDRMPAKTLVPWTI--------------------------------IISGYAEK 289
             A+ +FD +P K    WT                                 +ISGY   
Sbjct: 205 HSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNC 264

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+ +EA  +  +M  +G++ D+ T  S++ ACA + LL LG +VHA + + R   + +  
Sbjct: 265 GLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR-REDFSFHFD 323

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA--------------------------- 382
           N+LV +Y KCG  + A ++F  M  KDLVSWNA                           
Sbjct: 324 NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNIL 383

Query: 383 ----MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
               M+ GLA +G GE+ L LFS MK EGF P  Y F G + +C   G    G Q F++ 
Sbjct: 384 SWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNG-QQFHAQ 442

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----N 494
               G    +     +I +  + G ++EA ++ ++MP   +++ W  L+ A  +H     
Sbjct: 443 LVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSVSWNALIAALGQHGHGVE 501

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           AV++ EE+L      KG  P   T L+ + A +
Sbjct: 502 AVDVYEEMLK-----KGIRPDRITFLTVLTACS 529


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 184/558 (32%), Positives = 304/558 (54%), Gaps = 11/558 (1%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +++N  +QL   I+K        +   L++      ++  A KVF+++ + DV  +N++I
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSII 268

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              V N L  +   VF+ M   G+  D  T   +   C       L + +H    K  + 
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFS 328

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +    N+L+D YSKCG   +  AK +F  M  R +VS+ SMIAG  + G   EA +LF+
Sbjct: 329 REDRFCNTLLDMYSKCG--DLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFE 386

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN----IVSWSTMVWGYSKDG 259
           EM E     D  +   +L+  A+   ++    + E I   +    I   + ++  Y+K G
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCG 446

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISIL 318
            M  A+L+F  M  K ++ W  +I GY++   A EA  L++ +  E    PD+ T+  +L
Sbjct: 447 SMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVL 506

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA       G ++H  I +  +  + +V N+LVDMYAKCG+L  A  +F+ +T KDLV
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLV 566

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW  M+ G  MHG G++A+ LF++M+  G  PD+ +FV +L AC+H+G +D+G ++F  M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             +  I P VEHY C++D+L R+G L +A R +++MP+ P+A IWG LL  CR H+ V+L
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE V + +  L+  + G Y +++NI+A    W +V  +R ++ +   +K  G S +E+  
Sbjct: 687 AERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKG 746

Query: 559 EVHEFSVCDQLHPKSEQI 576
            V+ F   D  +P++E+I
Sbjct: 747 RVNIFVAGDSSNPETEKI 764



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 151/527 (28%), Positives = 257/527 (48%), Gaps = 14/527 (2%)

Query: 10  WFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           W    R L   LQ     K+L   K++   I       D  +  KL      C  +  A 
Sbjct: 90  WDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEAS 149

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           +VF+ ++      +N L+    ++   + +  +F  M   GV  D++T+  + K+ +   
Sbjct: 150 RVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             +  + +H  I K G+     V NSL+  Y K     V  A+K+F  M ERD++SWNS+
Sbjct: 210 SVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNH--RVDSARKVFDEMTERDVISWNSI 267

Query: 190 IAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNL--AFELF--EKIP 241
           I G V  G   +   +F +M     E D  +  ++  G A +  ++L  A   F  +   
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACF 327

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            R     +T++  YSK GD++ AK++F  M  +++V +T +I+GYA +G+A EA +L+++
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           MEE G+ PD  T+ ++L  CA + LL  G +VH  I +     +  V NAL+DMYAKCGS
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGS 447

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS-RMKDEGFGPDKYTFVGVLC 420
           +  A  VF+ M  KD++SWN ++ G + +    +AL LF+  + ++ F PD+ T   VL 
Sbjct: 448 MREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLP 507

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC      DKG +    + R+ G          ++D+  + G L  A RL+       + 
Sbjct: 508 ACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALLLA-RLLFDDITSKDL 565

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + W  ++     H   + A  + +  +R  G +P   + +S ++A +
Sbjct: 566 VSWTVMIAGYGMHGFGKEAIALFN-QMRQAGIEPDEISFVSLLYACS 611



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 114/247 (46%), Gaps = 12/247 (4%)

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           + E G  K A +L     +  + P   TL S+L  CA+S  L  G +V   I    F  +
Sbjct: 71  FCESGNLKNAVKLLHVSGKWDIDPR--TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLD 128

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
           +N+ + L  MY  CG L  A  VF+ +  +  + WN ++  LA  G    ++GLF +M  
Sbjct: 129 SNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS 188

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            G   D YTF  V  + +    ++ G Q + Y ++  +G    V +   ++    ++ R+
Sbjct: 189 SGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGN--SLVAFYLKNHRV 246

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSN 522
             A ++   M  E + I W +++     + +  LAE+ L   +++   G +    T++S 
Sbjct: 247 DSARKVFDEM-TERDVISWNSIING---YVSNGLAEKGLSVFVQMLFSGIEIDLATIVS- 301

Query: 523 IFAATGD 529
           +FA   D
Sbjct: 302 VFAGCAD 308


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 300/567 (52%), Gaps = 10/567 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +QL A   KL    +  I   L++  A C  +  A+  F + +  +V L+N ++ A    
Sbjct: 392 QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLL 451

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                +FR+F  MQ + +  + +TYP +LK C       L + IH+ I K  +  + +V 
Sbjct: 452 DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVC 511

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           + LID Y+K G   +  A  + +    +D+VSW +MIAG  +     +A   F +M +R 
Sbjct: 512 SVLIDMYAKLG--KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 569

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGDMEMAK 265
             S    L     A     A +  ++I  +  VS         + +V  YSK G++E A 
Sbjct: 570 IRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAY 629

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           L F++  A   + W  ++SG+ + G  +EA R++ +M   G+  ++ T  S + A +E+ 
Sbjct: 630 LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETA 689

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            +  G +VHA I K  +   T VCNA++ MYAKCGS+ +A   F  ++ K+ VSWNAM+ 
Sbjct: 690 NMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMIN 749

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
             + HG G +AL  F +M      P+  T VGVL AC+H G +DKG++YF SM  +YG+ 
Sbjct: 750 AYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLA 809

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P+ EHY C++D+L R+G L  A   +  MP+EP+A++W TLL AC  H  +E+ E     
Sbjct: 810 PKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHH 869

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L+ L+  D   Y +LSN++A    W+     R +MK+   +K  G S +EV N +H F V
Sbjct: 870 LLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYV 929

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGH 592
            DQ HP +++I++    L K    +G+
Sbjct: 930 GDQNHPLADEIHEYFKDLTKRASEIGY 956



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 238/512 (46%), Gaps = 17/512 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K ++L   +QL   ++KL    D Y+   L+S       +  A  +F+++   D   YNT
Sbjct: 283 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNT 342

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    Q     +A  +F  MQ  G+  D+ T   L+ AC+        Q +HA   K G
Sbjct: 343 LINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLG 402

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  +  +  +L++ Y+KC  +  +L    F+     ++V WN M+       +L  + R+
Sbjct: 403 FASNDKIEGALLNLYAKCSDIETAL--NYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 460

Query: 206 FDEMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSK 257
           F +M   + V    ++ +IL    + G++ L  ++  +I       N    S ++  Y+K
Sbjct: 461 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAK 520

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A  +  R   K +V WT +I+GY +     +A   + QM + G++ D+  L + 
Sbjct: 521 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 580

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ++ACA    L  G ++HA      F  +    NALV +Y+KCG+++ A   F      D 
Sbjct: 581 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDN 640

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++WNA++ G    G  E+AL +F+RM  EG   + +TF   + A +    + +G Q  ++
Sbjct: 641 IAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQ-VHA 699

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           +    G   + E    +I +  + G + +A +    + ++ N + W  ++ A  KH    
Sbjct: 700 VITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMK-NEVSWNAMINAYSKHG--- 755

Query: 498 LAEEVLDCLIRLKGSD--PGNYTMLSNIFAAT 527
              E LD   ++  S+  P + T++  + A +
Sbjct: 756 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 787



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/497 (26%), Positives = 244/497 (49%), Gaps = 25/497 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L++ ++L +QI+KL    +  ++ KL+        +  A+KVF+++ +  +  +N +I+
Sbjct: 83  SLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIK 142

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN-WFHLVQMIHALIYKCGYF 147
                SL+ + F +F  M  + V  +  T+  +L+AC G +  F +V+ IHA I   G  
Sbjct: 143 ELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLG 202

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               V N LID YS+ G V    A+++F  +  +D  SW +MI+GL K     EA RLF 
Sbjct: 203 KSTIVCNPLIDLYSRNGFV--DRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFC 260

Query: 208 EM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           +M      P   A S  ++L    K   + +  +L   +      S     + +V  Y  
Sbjct: 261 DMYVLGIMPTPYAFS--SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 318

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +  A+ +F  M  +  V +  +I+G ++ G  ++A  L+ +M+  GL+PD  TL S+
Sbjct: 319 LGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASL 378

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           + AC+  G L  G ++HA   K  F  N  +  AL+++YAKC  ++ A++ F     +++
Sbjct: 379 VVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENV 438

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V WN ML    +      +  +F +M+ E   P++YT+  +L  C   G ++ G Q    
Sbjct: 439 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 498

Query: 438 MERDYGILPQVEHYGC--MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN- 494
           + +      Q+  Y C  +ID+  + G+L  A  ++     + + + W T++    ++N 
Sbjct: 499 IIKTS---FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNF 554

Query: 495 ---AVELAEEVLDCLIR 508
              A+    ++LD  IR
Sbjct: 555 DDKALTTFRQMLDRGIR 571



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/391 (29%), Positives = 196/391 (50%), Gaps = 16/391 (4%)

Query: 110 GVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
           G+  ++ T  +LL+ C   N      + +H+ I K G+  +  +   L+D Y   G +  
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           +L  K+F  M ER I +WN MI  L       +   LF  M   +         G  +A 
Sbjct: 122 AL--KVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEAC 179

Query: 229 EM-NLAFELFEKIPHRNI---VSWSTMVWG-----YSKDGDMEMAKLLFDRMPAKTLVPW 279
              ++AF++ E+I  R I   +  ST+V       YS++G ++ A+ +FD +  K    W
Sbjct: 180 RGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSW 239

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +ISG ++     EA RL+  M   G+ P      S+L+AC +   L +G ++H  + K
Sbjct: 240 VAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 299

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
             F  +T VCNALV +Y   GSL +A  +F+ M+++D V++N ++ GL+  G GEKA+ L
Sbjct: 300 LGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 359

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLL 458
           F RM+ +G  PD  T   ++ AC+  G +  G Q + Y+ +  +    ++E  G +++L 
Sbjct: 360 FKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--GALLNLY 417

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            +   ++ AL       VE N ++W  +L A
Sbjct: 418 AKCSDIETALNYFLETEVE-NVVLWNVMLVA 447



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 103/215 (47%), Gaps = 6/215 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L + +Q+ AQ        D      L++  + C  +  A   F   +  D   +N L+  
Sbjct: 590 LKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSG 649

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+  N +A RVF  M  +G+ ++NFT+   +KA +        + +HA+I K GY  +
Sbjct: 650 FQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSE 709

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
             V N++I  Y+KCG   +S AKK F+ +  ++ VSWN+MI    K G  SEA   FD+M
Sbjct: 710 TEVCNAIISMYAKCG--SISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQM 767

Query: 210 PERDA----VSWNTILDGYAKAGEMNLAFELFEKI 240
              +     V+   +L   +  G ++   E FE +
Sbjct: 768 IHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESM 802


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 193/620 (31%), Positives = 310/620 (50%), Gaps = 81/620 (13%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPD 79
           L  L +C +    +Q+  Q     + +  ++  + IS     +    +  +F+ I   P+
Sbjct: 25  LSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSIS----LKDFTYSTLIFSHITPHPN 80

Query: 80  VHLYNTLIRACVQNSLN-AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            + +N ++RA      +      ++  M+   +  +NFT+PF+  AC       + ++ H
Sbjct: 81  DYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH 140

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             ++K G   D    NS++  Y +CG  GV                              
Sbjct: 141 CEVFKLGLDNDHHTVNSMVTMYFRCGENGV------------------------------ 170

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN--------IVS--- 247
              AR++FDE+ E+D VSWN++L GYAK G    A E+F ++   +        +VS   
Sbjct: 171 ---ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLG 227

Query: 248 ------------W-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                       W                 S ++  YSK G++  ++ +FD MP++  + 
Sbjct: 228 ACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFIT 287

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W   IS YA+ GMA EA  L+  M+E G+ P+  TL ++L+ACA  G L LG ++     
Sbjct: 288 WNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYAT 347

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
               + +  V  AL+DMYAKCGSL++A  VFN M +K+  SWNAM+  LA HG+ ++AL 
Sbjct: 348 HRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALS 407

Query: 399 LFSRMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           LF RM DEG    P+  TFV +L AC HAG +D+G + F  M   +G++P++EHY CM+D
Sbjct: 408 LFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVD 467

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL R+G L EA  +++ MP +P+ +  G L  AC++   V++ E V+  L+ L  S+ GN
Sbjct: 468 LLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGN 527

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y + S I+     W+  A +R  M++    K  G S +EV N++ EF   D L   S  +
Sbjct: 528 YIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDV 587

Query: 577 YQMINTLGKDLKPVGHAAKL 596
             +I+ L ++LK  G+  K+
Sbjct: 588 RNIIDLLYEELKKEGYVPKI 607


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 201/627 (32%), Positives = 318/627 (50%), Gaps = 48/627 (7%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L +    K+L + +QL   II L  ++ P + PKL++  +    +  A  +  +      
Sbjct: 107 LSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNILHP 166

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N LI + V+N    +A   +  M +KG+  DNFTYP +LKAC  +      + +H  
Sbjct: 167 FPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVHES 226

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I        + V N+LI  Y KCG VG+  A+ LF  + ERD VSWNSMI+     G  +
Sbjct: 227 INASRIKWSLIVHNALISMYGKCGKVGI--ARDLFDKIPERDAVSWNSMISVYASMGMWN 284

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSW---- 248
           EA  LF  M     E + + WNTI  GY + G    A EL  ++     H + V+     
Sbjct: 285 EAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGL 344

Query: 249 -------------------------------STMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
                                          + ++  YS+  D++ A LLF  M AK+L+
Sbjct: 345 GACSHIGDAKLGKEIHSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLI 404

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W  IISG      ++EA+ L  +M   G++P+  T+ S+L  CA    L  G + H  +
Sbjct: 405 TWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYM 464

Query: 338 NKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
            +   FK +  + NALVDMYA+ G +  A  VF+ + ++D +++ +M+ G  M G+G+ A
Sbjct: 465 TRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAA 524

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L LF  M +    PD  T + VL AC+H+G + +G   F  M   YG+ P +EH+ CM D
Sbjct: 525 LKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTD 584

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           L GR+G L +A  ++++MP +P   +W TL+GACR H   E+ E   + L+ +K  +PG 
Sbjct: 585 LFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMKPENPGY 644

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y +++N++AA G WNK+A VR+ M+    +K  G + V+V      F V D  +  +++I
Sbjct: 645 YVLIANMYAAAGCWNKLAKVRIFMRDLGVRKAPGCAWVDVGTGFSPFLVDDTSNANADEI 704

Query: 577 YQMINTLGKDLKPVGHAAKLSAEIGEG 603
           Y ++  L   +K  G+ +  S + G G
Sbjct: 705 YPLLEGLTMVMKEAGYIS--SEDFGSG 729



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 110/265 (41%), Gaps = 20/265 (7%)

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S+L++C +   L  G ++H  I    F+ +  +   LV  Y+    L +A  +       
Sbjct: 105 SLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNIL 164

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
               WN ++     +G  +KAL  + +M  +G  PD +T+  VL AC     +  G +  
Sbjct: 165 HPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEVH 224

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            S+         + H   +I + G+ G++  A  L   +P E +A+ W +++     + +
Sbjct: 225 ESINASRIKWSLIVH-NALISMYGKCGKVGIARDLFDKIP-ERDAVSWNSMISV---YAS 279

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTRAQKPS-- 549
           + +  E  +    +   D     ++ N  A     TG++     +  QM+K  +   S  
Sbjct: 280 MGMWNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVA 339

Query: 550 -----GASS----VEVDNEVHEFSV 565
                GA S     ++  E+H F++
Sbjct: 340 LIIGLGACSHIGDAKLGKEIHSFAI 364


>gi|242038381|ref|XP_002466585.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
 gi|241920439|gb|EER93583.1| hypothetical protein SORBIDRAFT_01g010380 [Sorghum bicolor]
          Length = 529

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 162/391 (41%), Positives = 242/391 (61%), Gaps = 2/391 (0%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           ++ A+ +F +M ERD+VSWNSM+AGL K G L EA  LFD+MPE +A SWN ++ G+   
Sbjct: 138 ITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALVSGFMAQ 197

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           G +  A ELFE++P RN VSW TM+ GY+K GD++ A  LFDRM +K L  W  +IS YA
Sbjct: 198 GHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSKDLYAWNAMISCYA 257

Query: 288 EKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           + G A+EA  ++++M +  +   P++ T  S+++AC++ G L  G+ V + +       +
Sbjct: 258 QNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLWVESFMGYVGVHLD 317

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
            ++  AL+D+Y K G +D A  +F G+  +D+VS++AM+ G  MHG+  +A+ LF  M  
Sbjct: 318 DHLRTALIDLYTKSGQMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAISLFKEMSK 377

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
               P+  TFVG+L A +HAG +++    F SM   Y I P +EHY  M+D+LGR G+L+
Sbjct: 378 ARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSMEHYTIMVDILGRCGKLE 437

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           EA +L+  +PV P+A +WG LL ACR HN +EL E        L+  + G Y +L NI+A
Sbjct: 438 EAFQLIMQIPVCPHASVWGALLLACRLHNNIELGEVAASKCFELEPKESGYYILLGNIYA 497

Query: 526 ATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
               W+KV  +R  M +    K  G+S V V
Sbjct: 498 QAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 528



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 156/374 (41%), Gaps = 59/374 (15%)

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           + GD+  A+ +F+ MP + +V W  +++G A+ G   EA  L+DQM E      +  +  
Sbjct: 134 RAGDITAARAMFEAMPERDVVSWNSMVAGLAKAGHLDEAIELFDQMPETNAASWNALV-- 191

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVC-NALVDMYAKCGSLDNAMSVFNGMTKK 375
                  SG +  G    A     R     NV    ++  YAK G +  A ++F+ M  K
Sbjct: 192 -------SGFMAQGHLAQAQELFERMPIRNNVSWITMISGYAKAGDVQAAANLFDRMDSK 244

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF--GPDKYTFVGVLCACTHAGFIDKG-- 431
           DL +WNAM+   A +G   +ALG+F+RM        P++ TF  V+ AC+  G +  G  
Sbjct: 245 DLYAWNAMISCYAQNGCAREALGIFNRMLKPHIWVAPNEKTFSSVISACSQLGDLRFGLW 304

Query: 432 VQYFY-----------------------SMERDYGIL-----PQVEHYGCMIDLLGRSGR 463
           V+ F                         M+R + +        V  Y  MI   G  G+
Sbjct: 305 VESFMGYVGVHLDDHLRTALIDLYTKSGQMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGK 364

Query: 464 LKEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS---DPG-- 515
           L EA+ L + M    ++PNA+   T +G    ++   L EE   C   +      +P   
Sbjct: 365 LNEAISLFKEMSKARIDPNAV---TFVGLLSAYSHAGLLEEARACFTSMSSKYKINPSME 421

Query: 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA--SSVEVDNEVH----EFSVCDQL 569
           +YT++ +I    G   +   + +Q+         GA   +  + N +       S C +L
Sbjct: 422 HYTIMVDILGRCGKLEEAFQLIMQIPVCPHASVWGALLLACRLHNNIELGEVAASKCFEL 481

Query: 570 HPKSEQIYQMINTL 583
            PK    Y ++  +
Sbjct: 482 EPKESGYYILLGNI 495


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 205/621 (33%), Positives = 304/621 (48%), Gaps = 99/621 (15%)

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           MG A+ +F  +   D  ++N +IR    N L  +A   +  M+ +G+ +DNFT+PF++KA
Sbjct: 74  MGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKA 133

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C       + Q +H  + K G+  D++V N LID Y K G   + LA+K+F  M  RD+V
Sbjct: 134 CGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGF--IELAEKVFDEMPVRDLV 191

Query: 185 SWNSMIAGLVKGGELSEARRLFDEM----------------------------------- 209
           SWNSM++G    G+   +   F EM                                   
Sbjct: 192 SWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQV 251

Query: 210 ----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD----- 260
                E D +   +++D Y K G+++ A  +F +I  +NIV+W+ M+ G  +D       
Sbjct: 252 IRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVIPDV 311

Query: 261 MEMAKLL-------------------FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           + M  LL                     +M    LV  T ++  Y + G  K A  +++Q
Sbjct: 312 ITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQ 371

Query: 302 MEEAG-------------------------------LKPDDGTLISILAACAESGLLGLG 330
           M E                                 LKPD  T+ S+L A AE      G
Sbjct: 372 MNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEG 431

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            ++H+ I K     NT + NA+V MYAKCG L  A   F+GM  KD+VSWN M+   A+H
Sbjct: 432 KQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIH 491

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G G  ++  FS M+ +GF P+  TFV +L AC+ +G ID+G  +F SM+ +YGI P +EH
Sbjct: 492 GFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEH 551

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGCM+DLLGR+G L EA   ++ MP+ P A IWG+LL A R HN V LAE     ++ LK
Sbjct: 552 YGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLK 611

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
             + G Y +LSN++A  G W  V  ++  MK+    K  G S V+++     F   D+ H
Sbjct: 612 HDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSH 671

Query: 571 PKSEQIYQMINTLGKDLKPVG 591
             +  IY +++ L   LK +G
Sbjct: 672 AHTNLIYDVLDIL---LKKIG 689



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 161/346 (46%), Gaps = 28/346 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L    ++  Q+I+ +L+ D  +   LI     C ++  A +VFN I   ++  +N +I  
Sbjct: 241 LRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGG 300

Query: 90  CVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
                           MQE   V  D  T   LL +C+        + IH    +  +  
Sbjct: 301 ----------------MQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLP 344

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF-- 206
            + +  +L+D Y KCG   + LA+ +F  M E+++VSWN+M+A  V+  +  EA ++F  
Sbjct: 345 YLVLETALVDMYGKCG--ELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQH 402

Query: 207 --DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGD 260
             +E  + DA++  ++L   A+    +   ++   I       N    + +V+ Y+K GD
Sbjct: 403 ILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGD 462

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ A+  FD M  K +V W  +I  YA  G  + + + + +M   G KP+  T +S+L A
Sbjct: 463 LQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTA 522

Query: 321 CAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNA 365
           C+ SGL+  G     S+  +Y           ++D+  + G+LD A
Sbjct: 523 CSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEA 568



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 77/263 (29%), Positives = 132/263 (50%), Gaps = 8/263 (3%)

Query: 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
           F+ +   N ++ +  + G+ + G M  A  +F++M       W +II GY   G+ +EA 
Sbjct: 50  FKPLARPNDLNITRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAI 109

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
             Y +ME  G++ D+ T   ++ AC E   L +G KVH  + K  F  +  VCN L+DMY
Sbjct: 110 DFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMY 169

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
            K G ++ A  VF+ M  +DLVSWN+M+ G  + G G  +L  F  M   G   D++  +
Sbjct: 170 LKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMI 229

Query: 417 GVLCACTHAGFIDKGVQYFYSM---ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
             L AC+    +  G++    +   E +  I+ Q      +ID+ G+ G++  A R+   
Sbjct: 230 SALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTS----LIDMYGKCGKVDYAERVFNR 285

Query: 474 MPVEPNAIIWGTLLGACRKHNAV 496
           +    N + W  ++G  ++ + V
Sbjct: 286 I-YSKNIVAWNAMIGGMQEDDKV 307


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 310/566 (54%), Gaps = 12/566 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+   +IK  L    ++   +++  +    +  A  VF+ +++ +   +N++I   V N 
Sbjct: 214 QVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNG 273

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           L+ +AF +F  M+ +GV      +  ++K C         + +H  + K G   D+ +  
Sbjct: 274 LDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT 333

Query: 155 SLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           +L+ +YSKC    +  A KLF M  G +++VSW ++I+G V+ G    A  LF +M  R+
Sbjct: 334 ALMVAYSKCS--EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQM-RRE 390

Query: 214 AV-----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW-GYSKDGDMEMAKLL 267
            V     +++TIL   A      +   L  K  + N  S  T +   YSK GD   A  +
Sbjct: 391 GVRPNHFTYSTILTANAAVSPSQI-HALVVKTNYENSPSVGTALSDSYSKIGDANEAAKI 449

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE-SGL 326
           F+ +  K +V W+ ++SGYA+ G  + A +++ Q+ + G++P++ T  S+L ACA  +  
Sbjct: 450 FELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTAS 509

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           +  G + H+   K  F     V +ALV MYAK G++++A  VF     +DLVSWN+M+ G
Sbjct: 510 VEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISG 569

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
            A HG G+K+L +F  M+ +    D  TF+GV+ ACTHAG +++G +YF  M +DY I+P
Sbjct: 570 YAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVP 629

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            +EHY CM+DL  R+G L++A+ L+  MP    A IW TLL ACR H  V+L E   + L
Sbjct: 630 TMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKL 689

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           I L+  D   Y +LSNI+A  G+W + A VR  M   + +K +G S +EV N+   F   
Sbjct: 690 ISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAG 749

Query: 567 DQLHPKSEQIYQMINTLGKDLKPVGH 592
           D  HP+S++IY  +  L   LK  G+
Sbjct: 750 DLSHPQSDRIYLKLEELSIRLKDAGY 775



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 136/470 (28%), Positives = 231/470 (49%), Gaps = 18/470 (3%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           KQ+  Q IK     D  +   L+        +    +VF++++  +V  + +L+    QN
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            LN QA ++F  MQ +G+  + FT+  +L              +H ++ K G    IFV 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP--- 210
           NS+++ YSK   + VS AK +F SM  R+ VSWNSMIAG V  G   EA  LF  M    
Sbjct: 232 NSMVNMYSKS--LMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAK 265
            +     + T++   A   EM+ A +L  ++       ++   + ++  YSK  +++ A 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 266 LLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            LF  M   + +V WT IISGY + G    A  L+ QM   G++P+  T  +IL A A  
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAV 409

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
                  ++HA + K  ++ + +V  AL D Y+K G  + A  +F  + +KD+V+W+AML
Sbjct: 410 S----PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAML 465

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKGVQYFYSMERDYG 443
            G A  G  E A+ +F ++  EG  P+++TF  VL AC      +++G Q F+S     G
Sbjct: 466 SGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ-FHSCSIKSG 524

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
               +     ++ +  + G ++ A  + +   V+ + + W +++    +H
Sbjct: 525 FSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQH 573



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 220/462 (47%), Gaps = 20/462 (4%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           ++F++     +   N L+    +N  N +A  +FL ++  G  TD  +   +LK C G  
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVC-GCL 105

Query: 130 WFHLV-QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNS 188
           +  +V + +H    KCG+  D+ V  SL+D Y K     V   +++F  M  +++VSW S
Sbjct: 106 FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMK--TESVEDGERVFDEMRVKNVVSWTS 163

Query: 189 MIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           ++AG  + G   +A +LF +M     + +  ++  +L G A  G +    ++   +    
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 245 IVSW----STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           + S     ++MV  YSK   +  AK +FD M  +  V W  +I+G+   G+  EA  L+ 
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360
           +M   G+K       +++  CA    +    ++H  + K     + N+  AL+  Y+KC 
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCS 343

Query: 361 SLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
            +D+A  +F  M   +++VSW A++ G   +G+ ++A+ LF +M+ EG  P+ +T+  +L
Sbjct: 344 EIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTIL 403

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            A      +     +   ++ +Y   P V     + D   + G   EA ++ + +  E +
Sbjct: 404 TA---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAKIFELID-EKD 457

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            + W  +L    +   +E A ++   L + +G +P  +T  S
Sbjct: 458 IVAWSAMLSGYAQMGDIEGAVKIFLQLAK-EGVEPNEFTFSS 498



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 187/380 (49%), Gaps = 23/380 (6%)

Query: 27  CKNLNQ---TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-PDVHL 82
           C N+ +    KQL  Q+IK     D  I   L+ + + C ++  A K+F  +    +V  
Sbjct: 304 CANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVS 363

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +  +I   VQN    +A  +F  M+ +GV  ++FTY  +L A    N       IHAL+ 
Sbjct: 364 WTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA----NAAVSPSQIHALVV 419

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K  Y     V  +L DSYSK G    + A K+F  + E+DIV+W++M++G  + G++  A
Sbjct: 420 KTNYENSPSVGTALSDSYSKIG--DANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGA 477

Query: 203 RRLF----DEMPERDAVSWNTILDGYA------KAGEMNLAFELFEKIPHRNIVSWSTMV 252
            ++F     E  E +  +++++L+  A      + G+   +  +     +   VS S +V
Sbjct: 478 VKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVS-SALV 536

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G++E A  +F R   + LV W  +ISGYA+ G  K++ +++++M    L+ D  
Sbjct: 537 TMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGI 596

Query: 313 TLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T I +++AC  +GL+  G +     +  Y         + +VD+Y++ G L+ AM + N 
Sbjct: 597 TFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINK 656

Query: 372 MT-KKDLVSWNAMLYGLAMH 390
           M        W  +L    +H
Sbjct: 657 MPFPAGATIWRTLLAACRVH 676



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 3/248 (1%)

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           ++ LFD  P + L     ++  ++     KEA  L+  +  +G   D  +L  +L  C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
                +G +VH    K  F  + +V  +LVDMY K  S+++   VF+ M  K++VSW ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           L G   +G  E+AL LFS+M+ EG  P+ +TF  VL      G ++KGVQ  ++M    G
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQ-VHTMVIKSG 223

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           +   +     M+++  +S  + +A  +  SM    NA+ W +++      N ++L    L
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSME-NRNAVSWNSMIAGFVT-NGLDLEAFEL 281

Query: 504 DCLIRLKG 511
              +RL+G
Sbjct: 282 FYRMRLEG 289



 Score = 44.3 bits (103), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 98/214 (45%), Gaps = 25/214 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++ Q KQ  +  IK        ++  L++  A    +  A +VF    D D+  +N++I 
Sbjct: 509 SVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMIS 568

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
              Q+    ++ ++F +M+ K +  D  T+  ++ AC        G+ +F L+   + ++
Sbjct: 569 GYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIV 628

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVV--GVSLAKKLFMSMGERDIVSWNSMIAGL-----V 194
               ++      + ++D YS+ G++   + L  K+    G      W +++A       V
Sbjct: 629 PTMEHY------SCMVDLYSRAGMLEKAMDLINKMPFPAGA---TIWRTLLAACRVHLNV 679

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228
           + GEL+ A +L    P+ D+ ++  + + YA AG
Sbjct: 680 QLGELA-AEKLISLQPQ-DSAAYVLLSNIYATAG 711


>gi|296088310|emb|CBI36755.3| unnamed protein product [Vitis vinifera]
          Length = 751

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 301/567 (53%), Gaps = 51/567 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDP 78
           L  L KCK + + K+L   +I   + +D     +L+   A      L  A  VFN I  P
Sbjct: 9   LSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQIDRP 68

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            ++++N++I+    +    +A  ++ +M++KG   D+FT+PF+LKAC+  N ++L Q +H
Sbjct: 69  SLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLGQCVH 128

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             I K G+  D++   +L+  Y+ CG +  +L  K+F  + + ++V+W S+IAG +    
Sbjct: 129 NCIVKTGFEVDVYAATALLQMYAACGDMEAAL--KVFDDIPKWNVVAWTSLIAGCISNDC 186

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
            SEA R++ +M                         EL+   P  N ++   ++   ++ 
Sbjct: 187 PSEAVRVYKDM-------------------------ELWSVAP--NEITMVNVLVACARS 219

Query: 259 GDMEMAKLLFDRMPAKTLVPW-----------TIIISGYA-----EKGMAKEAARLYDQM 302
            D+   + + DR     L P+           T I+  YA     + G A EA  L+  M
Sbjct: 220 RDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCAYNQYGQANEALDLFSDM 279

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
             AG  PD  T + ++ ACA  G L  G  +HA ++K     +T +  ALVDMYAK G  
Sbjct: 280 RIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDA 339

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCA 421
           + A  VF+ + KKD+ +W +++ GLAMHG GE+AL  F +M+ D    PD+ T++GVL A
Sbjct: 340 ERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSA 399

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H G ++ G  +F SM+  +GI P  +HYGCM+DLL R+GRL EA RLV+ MPVEPN  
Sbjct: 400 CSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVEPNTA 459

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           IW  LL  C+ +  +++A+ V   +  L+    G Y +LSNI+A    W +V   R  MK
Sbjct: 460 IWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMARELMK 519

Query: 542 KTRAQKPSGASSVE---VDNEVHEFSV 565
           + + QK  G SSVE   V   +H  SV
Sbjct: 520 ERKIQKSLGHSSVEMKMVGGALHNVSV 546


>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
 gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
          Length = 439

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 151/382 (39%), Positives = 248/382 (64%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
             ++D YAK G + L+   F+++  +N  SW+TM+ G+ ++G +  A  +FD MP + ++
Sbjct: 52  TALVDMYAKCGHVELSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVI 111

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT++I+G+ + G+ +EA   + +M+ + ++PD  T++++L+ACA  G LGLG+ VH   
Sbjct: 112 SWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYA 171

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            K   + N  +CN+L+D+Y++CG+++ A  VF  M ++ LVSWN+++ GLA +G  E+AL
Sbjct: 172 LKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEAL 231

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
             F  M+ +GF P+  +F G L AC+H G +D+G++YF  MER + I P++EHYGC++DL
Sbjct: 232 EHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDL 291

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
             R+GRL++A+ +VQ+MP++PN ++ G+LL ACR    VELAE +++ L+ L      NY
Sbjct: 292 YSRAGRLEDAMSVVQNMPMKPNEVVVGSLLAACRTRGDVELAERLMNYLVHLDPGADSNY 351

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+AA G W+     R+ MK    QK  G SS+E+  ++HEF   D+ H K+E IY
Sbjct: 352 VLLSNIYAAVGRWDGACKQRMTMKALGIQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIY 411

Query: 578 QMINTLGKDLKPVGHAAKLSAE 599
            M+  L  D    G+  +  A+
Sbjct: 412 SMLELLSFDQALCGYVPEAMAK 433



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 149/305 (48%), Gaps = 45/305 (14%)

Query: 114 DNFTYPFLLKACNG--KNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGVSL 170
           ++ T+  LL  C         L  ++HA   K G    ++ V  +L+D Y+KCG   V L
Sbjct: 9   NHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCG--HVEL 66

Query: 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM 230
           ++  F  +  ++  SWN+MI G V+ G++ EA  +FDEMPER  +SW  +++G+ K G  
Sbjct: 67  SRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLF 126

Query: 231 NLAFELFEKI------PHR---------------------------------NIVSWSTM 251
             A E F K+      P R                                 N+   +++
Sbjct: 127 EEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSL 186

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  YS+ G +E+A+ +F++M  +TLV W  II G A  G  +EA   +D M++ G KP+D
Sbjct: 187 IDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPND 246

Query: 312 GTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
            +    L AC+ +GL+  G+K    + + ++          +VD+Y++ G L++AMSV  
Sbjct: 247 VSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQ 306

Query: 371 GMTKK 375
            M  K
Sbjct: 307 NMPMK 311



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 71/217 (32%), Positives = 105/217 (48%), Gaps = 13/217 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           AI+VF+++ +  V  +  LI   V+  L  +A   F  MQ   V  D  T   +L AC  
Sbjct: 98  AIEVFDEMPERGVISWTVLINGFVKMGLFEEALEWFRKMQVSKVEPDRVTIVTVLSACAN 157

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   +H    K G   ++ + NSLID YS+CG   + LA+++F  MGER +VSWN
Sbjct: 158 LGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCG--AIELARQVFEKMGERTLVSWN 215

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFE----- 238
           S+I GL   G   EA   FD M ++    + VS+   L   +  G ++   + F+     
Sbjct: 216 SIIGGLAANGFTEEALEHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERV 275

Query: 239 -KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
            KI  R I  +  +V  YS+ G +E A  +   MP K
Sbjct: 276 HKISPR-IEHYGCIVDLYSRAGRLEDAMSVVQNMPMK 311



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 118/256 (46%), Gaps = 39/256 (15%)

Query: 307 LKPDDGTLISILAACAESGLLG--LGMKVHASINKYRF-KCNTNVCNALVDMYAKCGSLD 363
           + P+  T I++L+ CA+    G  LG  +HA   K     CN  V  ALVDMYAKCG ++
Sbjct: 6   IDPNHVTFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVE 65

Query: 364 -------------------------------NAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
                                           A+ VF+ M ++ ++SW  ++ G    G 
Sbjct: 66  LSRLCFDELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGL 125

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV-QYFYSMERDYGILPQVEHY 451
            E+AL  F +M+     PD+ T V VL AC + G +  G+  + Y++++  G+   V+  
Sbjct: 126 FEEALEWFRKMQVSKVEPDRVTIVTVLSACANLGALGLGLWVHRYALKK--GLRDNVKIC 183

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             +IDL  R G ++ A ++ + M  E   + W +++G    +   E A E  D L++ +G
Sbjct: 184 NSLIDLYSRCGAIELARQVFEKMG-ERTLVSWNSIIGGLAANGFTEEALEHFD-LMQKQG 241

Query: 512 SDPGNYTMLSNIFAAT 527
             P + +    + A +
Sbjct: 242 FKPNDVSFTGALTACS 257



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/180 (21%), Positives = 83/180 (46%), Gaps = 14/180 (7%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           +K  L+ +  I   LI   + C  + LA +VF  + +  +  +N++I     N    +A 
Sbjct: 172 LKKGLRDNVKICNSLIDLYSRCGAIELARQVFEKMGERTLVSWNSIIGGLAANGFTEEAL 231

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFVP 153
             F  MQ++G   ++ ++   L AC+       G  +F +++ +H +  +  ++G     
Sbjct: 232 EHFDLMQKQGFKPNDVSFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYG----- 286

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
             ++D YS+ G +  +++    M M   ++V   S++A     G++  A RL + +   D
Sbjct: 287 -CIVDLYSRAGRLEDAMSVVQNMPMKPNEVVV-GSLLAACRTRGDVELAERLMNYLVHLD 344


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/554 (33%), Positives = 299/554 (53%), Gaps = 20/554 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR--QMGLAIKVFNDIQDP 78
           L  L KCK++ + K+L   I+     +      KLI          +  A  V   I +P
Sbjct: 8   LSLLAKCKSMRELKKLHGLIVTTPTIKSIIPLSKLIDFCVDSEFGDINYADLVLRQIHNP 67

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            V+++N++IR  V +     +  ++  M E G   D+FT+PF+LKAC         + IH
Sbjct: 68  SVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIH 127

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           + I K G+  D +    L+  Y  C  +   L  K+F ++ + ++V+W  +IAG VK  +
Sbjct: 128 SCIVKSGFEADAYTATGLLHMYVSCADMKSGL--KVFDNIPKWNVVAWTCLIAGYVKNNQ 185

Query: 199 LSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLA-----------FELFEKIPHR 243
             EA ++F++M     E + ++    L   A + +++             ++ F    + 
Sbjct: 186 PYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNS 245

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           NI+  + ++  Y+K G +++A+ LF++MP + +V W  +I+ Y +    +EA  L+  M 
Sbjct: 246 NIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMW 305

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
            +G+ PD  T +S+L+ CA    L LG  VHA + K     + ++  AL+DMYAK G L 
Sbjct: 306 TSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELG 365

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK-DEGFGPDKYTFVGVLCAC 422
           NA  +F+ + KKD+V W +M+ GLAMHG G +AL +F  M+ D    PD  T++GVL AC
Sbjct: 366 NAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFAC 425

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +H G +++  ++F  M   YG++P  EHYGCM+DLL R+G  +EA RL+++M V+PN  I
Sbjct: 426 SHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAI 485

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           WG LL  C+ H  V +A +V   L  L+    G + +LSNI+A  G W +V   R  MK 
Sbjct: 486 WGALLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKH 545

Query: 543 TRAQKPSGASSVEV 556
            R  K  G SSVE+
Sbjct: 546 KRITKTIGHSSVEM 559


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 186/552 (33%), Positives = 301/552 (54%), Gaps = 16/552 (2%)

Query: 44  DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           ++  D ++   L+   + C QMG A+KVF + Q PD  L+ +++    QN+   +A  +F
Sbjct: 134 EIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALF 193

Query: 104 LDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
             M     V  D  T   ++ AC           +H L+ +  + GD+ + NSL++ Y+K
Sbjct: 194 SQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAK 253

Query: 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILD 222
            G     +A  LF  M E+D++SW++MIA        +EA  LF EM E+     +  + 
Sbjct: 254 TGCE--KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVV 311

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG---DMEM-------AKLLFDRMP 272
              +A  ++   E  +KI    I  W      +S      DM M       A  LF R+P
Sbjct: 312 SALQACAVSRNLEEGKKI--HKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLP 369

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
            K +V W  ++SGYA+ GMA ++  ++  M   G++PD   ++ ILAA +E G+    + 
Sbjct: 370 KKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALC 429

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  + +  F  N  V  +L+++Y+KCGSL +A+ +F GM  +D+V W++M+    +HG+
Sbjct: 430 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 489

Query: 393 GEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           G +AL +F +M K+    P+  TF+ +L AC+HAG +++G++ F  M  DY + P  EH+
Sbjct: 490 GGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHF 549

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           G M+DLLGR G+L +A+ ++  MP+     +WG LLGACR H+ +E+ E     L  L  
Sbjct: 550 GIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDP 609

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
           S  G Y +LSNI+A  G W+ VA +R ++K+   +K  G S VEV   VH F   D+ HP
Sbjct: 610 SHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHP 669

Query: 572 KSEQIYQMINTL 583
            S++IY+++  L
Sbjct: 670 DSQKIYELLRKL 681



 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 162/420 (38%), Positives = 244/420 (58%), Gaps = 18/420 (4%)

Query: 186  WNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIP 241
            WN MI G    G    +  L+ +M E+    D  ++   L   A   ++        K+ 
Sbjct: 786  WNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRG-----KVI 840

Query: 242  HRNIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
            H+++V           + +V  Y+K GD+E A+L+FD+M  + LV WT +ISGYA  G  
Sbjct: 841  HQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYN 900

Query: 293  KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
             E    +D M  +G+ P+  +++S+L AC   G L  G   H+ + +  F+ +  V  A+
Sbjct: 901  SETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAI 960

Query: 353  VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
            +DMY+KCGSLD A  +F+    KDLV W+AM+    +HG G KA+ LF +M   G  P  
Sbjct: 961  MDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSH 1020

Query: 413  YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
             TF  VL AC+H+G +++G  YF  M  ++ I  ++ +Y CM+DLLGR+G+L EA+ L++
Sbjct: 1021 VTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIE 1080

Query: 473  SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532
            +MPVEP+A IWG+LLGACR HN ++LAE++ D L  L     G + +LSNI+AA   WN+
Sbjct: 1081 NMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNE 1140

Query: 533  VANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            V  VR  M +  A K  G S VE DN+VH+F V D+ HP+ E++Y  +  L   +K +G+
Sbjct: 1141 VEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGY 1200



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 181/619 (29%), Positives = 272/619 (43%), Gaps = 111/619 (17%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R++L +  Q    C N     QL +Q+ K  +  D + A KL S  A C  +  A KVF+
Sbjct: 4   RQVLVDLFQ---ACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFD 60

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVF-LDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           +   P+VHL+N+ +R+  +     +  R+F L +   G   DNFT P  LKAC G     
Sbjct: 61  ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120

Query: 133 LVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
           L ++IH    K    G D+FV ++L++ YSKCG +G +L  K+F      D V W SM+ 
Sbjct: 121 LGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEAL--KVFEEFQRPDTVLWTSMVT 178

Query: 192 GLVKGGELSEARRLFDEMPERDAVSW---------------------------------- 217
           G  +  +  EA  LF +M   D V                                    
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFD 238

Query: 218 ------NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
                 N++L+ YAK G   +A  LF K+P ++++SWSTM                    
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTM-------------------- 278

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
                      I+ YA    A EA  L+ +M E   +P+  T++S L ACA S  L  G 
Sbjct: 279 -----------IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGK 327

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           K+H       F+ + +V  AL+DMY KC   D A+ +F  + KKD+VSW A+L G A +G
Sbjct: 328 KIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNG 387

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
              K++G+F  M  +G  PD    V +L A +  G   + +     + R  G    V   
Sbjct: 388 MAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVG 446

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             +I+L  + G L +A++L + M V  + +IW +++ A   H     A E+ D +++   
Sbjct: 447 ASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSSMIAAYGIHGRGGEALEIFDQMVKNST 505

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE-----VDNEVHEFSVC 566
             P N T LS + A                       S A  VE      D  VH++   
Sbjct: 506 VRPNNVTFLSILSAC----------------------SHAGLVEEGLKIFDRMVHDY--- 540

Query: 567 DQLHPKSEQIYQMINTLGK 585
            QL P SE    M++ LG+
Sbjct: 541 -QLRPDSEHFGIMVDLLGR 558



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/392 (30%), Positives = 188/392 (47%), Gaps = 24/392 (6%)

Query: 34   KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
            K+  A+I    LQ D  I  K         ++  A  VF DI +P   L+N +IR    +
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 94   SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                 +  ++  M EKG+  D F +PF LK+C G +     ++IH  +  CG   D+FV 
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVD 856

Query: 154  NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM---- 209
             +L+D Y+KCG   +  A+ +F  M  RD+VSW SMI+G    G  SE    FD M    
Sbjct: 857  AALVDMYAKCG--DIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSG 914

Query: 210  --PERDAVSWNTIL-----DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDME 262
              P R  VS  ++L      G  + GE   ++ +        +V+ + M   YSK G ++
Sbjct: 915  VIPNR--VSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDM-YSKCGSLD 971

Query: 263  MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            +A+ LFD    K LV W+ +I+ Y   G  ++A  L+DQM +AG++P   T   +L+AC+
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031

Query: 323  ESGLLGLGMKVHASINKYRFKCNTNVCN--ALVDMYAKCGSLDNAMSVFNGM-TKKDLVS 379
             SGLL  G K++  +    F     + N   +VD+  + G L  A+ +   M  + D   
Sbjct: 1032 HSGLLEEG-KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASI 1090

Query: 380  WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
            W ++L    +H      L L  ++ D  F  D
Sbjct: 1091 WGSLLGACRIHNN----LDLAEKIADHLFHLD 1118



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 119/262 (45%), Gaps = 12/262 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ     +NL + K++    +    + D  ++  LI     C     A+ +F  +   DV
Sbjct: 314 LQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDV 373

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  L+    QN +  ++  VF +M   G+  D      +L A +    F     +H  
Sbjct: 374 VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGY 433

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + + G+  ++FV  SLI+ YSKCG +G ++  KLF  M  RD+V W+SMIA     G   
Sbjct: 434 VVRSGFNSNVFVGASLIELYSKCGSLGDAV--KLFKGMIVRDVVIWSSMIAAYGIHGRGG 491

Query: 201 EARRLFDEMPERDAVSWN-----TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGY 255
           EA  +FD+M +   V  N     +IL   + AG +    ++F+++ H   +   +  +G 
Sbjct: 492 EALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGI 551

Query: 256 SKD-----GDMEMAKLLFDRMP 272
             D     G +  A  + +RMP
Sbjct: 552 MVDLLGRIGQLGKAMDIINRMP 573



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 116/255 (45%), Gaps = 11/255 (4%)

Query: 29   NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            +L + K +   ++      D ++   L+   A C  +  A  VF+ +   D+  + ++I 
Sbjct: 833  DLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMIS 892

Query: 89   ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
                N  N++    F  M+  GV  +  +   +L AC         +  H+ + + G+  
Sbjct: 893  GYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF 952

Query: 149  DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            DI V  +++D YSKCG   + LA+ LF     +D+V W++MIA     G   +A  LFD+
Sbjct: 953  DILVATAIMDMYSKCG--SLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQ 1010

Query: 209  MPERDA----VSWNTILDGYAKAG---EMNLAFELF--EKIPHRNIVSWSTMVWGYSKDG 259
            M +       V++  +L   + +G   E  + F+L   E +  R + +++ MV    + G
Sbjct: 1011 MVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG 1070

Query: 260  DMEMAKLLFDRMPAK 274
             +  A  L + MP +
Sbjct: 1071 QLSEAVDLIENMPVE 1085



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 84/203 (41%), Gaps = 21/203 (10%)

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           K HA I  Y  + ++ +      MY     +D A  VF  +       WN M+ G A  G
Sbjct: 738 KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           +   +L L+S+M ++G  PDK+ F   L +C  AG  D        ++R   I   +   
Sbjct: 798 RFLSSLELYSKMMEKGLKPDKFAFPFALKSC--AGLSD--------LQRGKVIHQHLVCC 847

Query: 452 GC---------MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GC         ++D+  + G + EA RLV       + + W +++     HN        
Sbjct: 848 GCSNDLFVDAALVDMYAKCGDI-EAARLVFDKMAVRDLVSWTSMISG-YAHNGYNSETLG 905

Query: 503 LDCLIRLKGSDPGNYTMLSNIFA 525
              L+R  G  P   ++LS + A
Sbjct: 906 FFDLMRSSGVIPNRVSILSVLLA 928


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/583 (32%), Positives = 311/583 (53%), Gaps = 16/583 (2%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           +RR++ + L+   +  +L    QL A ++KL    D  +   LI   A C ++ +A +VF
Sbjct: 3   RRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVF 62

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + + + +V  +  L+   + +    +  R+F +M+  G   + FT    LKAC G     
Sbjct: 63  DGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAG 122

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           +   IH +  + G+ G   V NSL+  YSK    G   A+++F  +  R++ +WNSMI+G
Sbjct: 123 V--QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGD--ARRVFDVIPSRNLATWNSMISG 178

Query: 193 LVKGGELSEARRLFDEMPER-----DAVSWNTILD-----GYAKAG-EMNLAFELFEKIP 241
               G+  ++  +F EM  R     D  ++ ++L      G A+ G +++ A  +    P
Sbjct: 179 YAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSP 238

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N +    ++  Y K   + +A  +FD +  +  + WT +I G+A++G  KEA  L+ +
Sbjct: 239 ASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRR 298

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
              +G++ D   L S++A  A+  L+  G +VH    K     + +V N+LVDMY KCG 
Sbjct: 299 FWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGL 358

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
              A   F  M  +++VSW AM+ G+  HG G +A+ LF  M+ EG   D+  ++ +L A
Sbjct: 359 TGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSA 418

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H+G +D+  +YF  + +D  + P+ EHY CM+DLLGR+G L+EA  L+ SMP+EP   
Sbjct: 419 CSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG 478

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W TLL ACR H  V +  EV D L+ + G +P NY MLSNI A  G+W +   +R  M+
Sbjct: 479 VWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMR 538

Query: 542 KTRAQKPSGASSVEVDNEVHEF-SVCDQLHPKSEQIYQMINTL 583
           +   +K  G S  EVD EVH F    D  HP++  I + +  +
Sbjct: 539 RKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREV 581


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 188/568 (33%), Positives = 304/568 (53%), Gaps = 45/568 (7%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F++I  PD    +TLI A   + L+ +A +++  +QE+G+  D   +    KAC  
Sbjct: 31  ARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAV 90

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                 V+ +H    +CG   D+FV N+LI +Y KC  V    A+++F  +  RD+VSW 
Sbjct: 91  SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCV--EGARRVFDDLVVRDVVSWT 148

Query: 188 SMIAGLVKGGELSEARRLFDEM------PERDAVS------------------------- 216
           S+ +  VK G   +   +F EM      P    VS                         
Sbjct: 149 SLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRH 208

Query: 217 --------WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
                    + ++  YAK   +  A  +F+ +PHR++VSW+ ++  Y K+ + E    LF
Sbjct: 209 GMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLF 268

Query: 269 DRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
            +M    +      W  +I G  E G ++EA  ++ +M++ G KP++ T+ SIL AC+ S
Sbjct: 269 LKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFS 328

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L +G ++H  + ++    +     AL+ MYAKCG L+ + +VF+ M +KD+V+WN M+
Sbjct: 329 ENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMI 388

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
              AMHG G++AL LF +M      P+  TF GVL  C+H+  +++GVQ F SM RD+ +
Sbjct: 389 IANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLV 448

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P   HY C++D+  R+GRL EA + +Q MP+EP A  WG LL ACR +  VELA+    
Sbjct: 449 EPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAK 508

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L  ++ ++PGNY  L NI      W++ + VR+ MK+    K  G S ++V N+VH F 
Sbjct: 509 KLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFV 568

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           V D+ + +S++IY  ++ L + +K  G+
Sbjct: 569 VGDKSNIESDKIYNFLDELVEKMKMAGY 596



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 2/239 (0%)

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GD   A+ LFD +P       + +IS     G++ EA ++Y  ++E G+KPD    ++  
Sbjct: 26  GDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPDMPVFLAAA 85

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA SG      +VH    +     +  V NAL+  Y KC  ++ A  VF+ +  +D+V
Sbjct: 86  KACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVV 145

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW ++       G   K + +F  M   G  P+  T   +L AC     +  G +  +  
Sbjct: 146 SWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKE-IHGF 204

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
              +G++  +     ++ L  +   ++EA  +   MP   + + W  +L A  K+   E
Sbjct: 205 AVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMP-HRDVVSWNGVLTAYFKNKEYE 262



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 135/291 (46%), Gaps = 15/291 (5%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC ++ + + +F  +   D+     +      +    +   L +K+  D    D   +N 
Sbjct: 226 KCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNA 285

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I  C++N  + +A  +F  MQ+ G   +  T   +L AC+      + + IH  +++  
Sbjct: 286 VIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHW 345

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
             GD+    +L+  Y+KCG   ++L++ +F  M  +D+V+WN+MI      G   EA  L
Sbjct: 346 KVGDLTSTTALLYMYAKCG--DLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFL 403

Query: 206 FDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYS 256
           FD+M     + ++V++  +L G + +  +    ++F  +   ++V      +S +V  YS
Sbjct: 404 FDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYS 463

Query: 257 KDGDMEMAKLLFDRMPAK-TLVPWTIIISG---YAEKGMAKEAARLYDQME 303
           + G +  A      MP + T   W  +++    Y    +AK +A+   ++E
Sbjct: 464 RAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIE 514



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 142/307 (46%), Gaps = 18/307 (5%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L   K++    ++  +  + ++   L+S  A C  +  A  VF+ +   DV  +N ++
Sbjct: 193 KDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVL 252

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQMIHALIYKCG 145
            A  +N    + F +FL M   GV  D  T+  ++  C  NG++    V+M   +  K G
Sbjct: 253 TAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE-EAVEMFRKM-QKMG 310

Query: 146 YFGDIFVPNSLID--SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
           +  +    +S++   S+S+   +G  +   +F      D+ S  +++    K G+L+ +R
Sbjct: 311 FKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSR 370

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVWGYSKDG 259
            +FD M  +D V+WNT++   A  G    A  LF+K+       N V+++ ++ G S   
Sbjct: 371 NVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSR 430

Query: 260 DMEMAKLLFDRMPAKTLVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            +E    +F+ M    LV      ++ ++  Y+  G   EA +    M    ++P     
Sbjct: 431 LVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMP---MEPTASAW 487

Query: 315 ISILAAC 321
            ++LAAC
Sbjct: 488 GALLAAC 494



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 3/139 (2%)

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L+ +    G  + A  +F+ + + D  + + ++  L  HG   +A+ ++S +++ G  PD
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
              F+    AC  +G   + V+  +      G++  V     +I   G+   ++ A R+ 
Sbjct: 78  MPVFLAAAKACAVSGDALR-VKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 472 QSMPVEPNAIIWGTLLGAC 490
             + V  + + W T L +C
Sbjct: 137 DDLVVR-DVVSW-TSLSSC 153


>gi|356510733|ref|XP_003524089.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Glycine max]
          Length = 649

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/538 (35%), Positives = 301/538 (55%), Gaps = 33/538 (6%)

Query: 39  QIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98
           ++ +L  QRD      +IS  A   +M  A+K+FN + + +   YN +I   + N     
Sbjct: 124 RLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVES 183

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKAC--NGKNWFHLVQMIHALIYKCGYFGD-----IF 151
           A   F  M E     D+ +   L+     NG+     + +   ++ +CG   D     + 
Sbjct: 184 AVGFFRTMPEH----DSTSLCALISGLVRNGE-----LDLAAGILRECGNGDDGKDDLVH 234

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMG-------------ERDIVSWNSMIAGLVKGGE 198
             N+LI  Y + G   V  A++LF  +               R++VSWNSM+   VK G+
Sbjct: 235 AYNTLIAGYGQRG--HVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGD 292

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258
           +  AR LFD M ERD  SWNT++  Y +   M  A +LF ++P  +++SW++++ G ++ 
Sbjct: 293 IVFARELFDRMVERDNCSWNTLISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQK 352

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GD+ +AK  F+RMP K L+ W  II+GY +    K A +L+ +M+  G +PD  TL S++
Sbjct: 353 GDLNLAKDFFERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVI 412

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           +       L LG ++H  + K     ++ + N+L+ MY++CG++ +A +VFN +   KD+
Sbjct: 413 SVSTGLVDLYLGKQLHQLVTKTVLP-DSPINNSLITMYSRCGAIVDACTVFNEIKLYKDV 471

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++WNAM+ G A HG   +AL LF  MK     P   TF+ VL AC HAG +++G + F S
Sbjct: 472 ITWNAMIGGYASHGSAAEALELFKLMKRLKIHPTYITFISVLNACAHAGLVEEGWRQFKS 531

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M  DYGI P+VEH+  ++D+LGR G+L+EA+ L+ +MP +P+  +WG LLGACR HN VE
Sbjct: 532 MINDYGIEPRVEHFASLVDILGRQGQLQEAMDLINTMPFKPDKAVWGALLGACRVHNNVE 591

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           LA    D LIRL+      Y +L N++A  G W+   +VR+ M++   +K +G S V+
Sbjct: 592 LALVAADALIRLEPESSAPYVLLYNMYANLGQWDDAESVRVLMEEKNVKKQAGYSWVD 649



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 113/383 (29%), Positives = 183/383 (47%), Gaps = 41/383 (10%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           +S A+ LF SM  RD V+WNSMI+G V+  E++ AR+LFDEMP RD VSWN I+ GY   
Sbjct: 54  ISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRRDVVSWNLIVSGYFSC 113

Query: 228 GEMNLAFE---LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
                  E   LFE +P R+ VSW+T++ GY+K+G M+ A  LF+ MP    V +  +I+
Sbjct: 114 CGSRFVEEGRRLFELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVIT 173

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFK 343
           G+   G  + A   +  M E     D  +L ++++    +G L L   +     N    K
Sbjct: 174 GFLLNGDVESAVGFFRTMPEH----DSTSLCALISGLVRNGELDLAAGILRECGNGDDGK 229

Query: 344 CN-TNVCNALVDMYAKCGSLDNAMSVFNGMT-------------KKDLVSWNAMLYGLAM 389
            +  +  N L+  Y + G ++ A  +F+ +              ++++VSWN+M+     
Sbjct: 230 DDLVHAYNTLIAGYGQRGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVK 289

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
            G    A  LF RM +     D  ++  ++        +++  + F  M       P V 
Sbjct: 290 AGDIVFARELFDRMVER----DNCSWNTLISCYVQISNMEEASKLFREMPS-----PDVL 340

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN----AVELAEEVLDC 505
            +  +I  L + G L  A    + MP   N I W T++    K+     A++L  E    
Sbjct: 341 SWNSIISGLAQKGDLNLAKDFFERMP-HKNLISWNTIIAGYEKNEDYKGAIKLFSE---- 395

Query: 506 LIRLKGSDPGNYTMLSNIFAATG 528
            ++L+G  P  +T+ S I  +TG
Sbjct: 396 -MQLEGERPDKHTLSSVISVSTG 417



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 190/442 (42%), Gaps = 88/442 (19%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK--GGE-LSEARRL 205
           D    NS+I  Y +     ++ A++LF  M  RD+VSWN +++G     G   + E RRL
Sbjct: 68  DTVTWNSMISGYVQ--RREIARARQLFDEMPRRDVVSWNLIVSGYFSCCGSRFVEEGRRL 125

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           F+ MP+RD VSWNT++ GYAK G M+ A +LF  +P  N VS++ ++ G+  +GD+E A 
Sbjct: 126 FELMPQRDCVSWNTVISGYAKNGRMDQALKLFNAMPEHNAVSYNAVITGFLLNGDVESAV 185

Query: 266 LLFDRMPAKT-------------------------------------LVPWTIIISGYAE 288
             F  MP                                        +  +  +I+GY +
Sbjct: 186 GFFRTMPEHDSTSLCALISGLVRNGELDLAAGILRECGNGDDGKDDLVHAYNTLIAGYGQ 245

Query: 289 KGMAKEAARLYDQMEEAGLKPDDG---------TLISILAACAESGLLGLGMKVHASINK 339
           +G  +EA RL+D + +     ++G         +  S++    ++G +    ++   + +
Sbjct: 246 RGHVEEARRLFDVIPDDDDDGNEGKRRFRRNVVSWNSMMMCYVKAGDIVFARELFDRMVE 305

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG-------- 391
            R  C+    N L+  Y +  +++ A  +F  M   D++SWN+++ GLA  G        
Sbjct: 306 -RDNCS---WNTLISCYVQISNMEEASKLFREMPSPDVLSWNSIISGLAQKGDLNLAKDF 361

Query: 392 -----------------------QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
                                    + A+ LFS M+ EG  PDK+T   V+   T  G +
Sbjct: 362 FERMPHKNLISWNTIIAGYEKNEDYKGAIKLFSEMQLEGERPDKHTLSSVISVST--GLV 419

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           D  +           +LP       +I +  R G + +A  +   + +  + I W  ++G
Sbjct: 420 DLYLGKQLHQLVTKTVLPDSPINNSLITMYSRCGAIVDACTVFNEIKLYKDVITWNAMIG 479

Query: 489 ACRKHNAVELAEEVLDCLIRLK 510
               H +   A E+   + RLK
Sbjct: 480 GYASHGSAAEALELFKLMKRLK 501



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 14/147 (9%)

Query: 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           N  N  +    + G +  A ++F+ M ++D V+WN+M+ G     +  +A  LF  M   
Sbjct: 39  NQSNKKLSNLIRSGRISEARTLFDSMKRRDTVTWNSMISGYVQRREIARARQLFDEMPRR 98

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE--HYGCMIDLLGRSGRL 464
                     G   +C  + F+++G        R + ++PQ +   +  +I    ++GR+
Sbjct: 99  DVVSWNLIVSGYF-SCCGSRFVEEG-------RRLFELMPQRDCVSWNTVISGYAKNGRM 150

Query: 465 KEALRLVQSMP----VEPNAIIWGTLL 487
            +AL+L  +MP    V  NA+I G LL
Sbjct: 151 DQALKLFNAMPEHNAVSYNAVITGFLL 177


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 187/547 (34%), Positives = 305/547 (55%), Gaps = 21/547 (3%)

Query: 71  VFNDIQD-PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           +FN   D  DV+ +N+LI    +   + ++ R F  M++  +  +  T+P  +K+C+   
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             +  +  H      G+  D+FV ++LID YSKCG   +S A+ LF  +  R+IV+W S+
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCG--KLSNARVLFDEIPRRNIVTWTSL 154

Query: 190 IAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
           I G V+  +  EA  +F E      E +     T +D  A    ++    +  K     +
Sbjct: 155 ITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGV 214

Query: 246 VSWS-------------TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMA 292
              +             T++  Y+K G++ +++ +FD M  K +V W  +I+ YA+ G++
Sbjct: 215 HGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLS 274

Query: 293 KEAARLYDQMEEAGL-KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
            +A  ++  M +AG  K ++ TL ++L ACA  G L +GM +H  + K  +  N  +  +
Sbjct: 275 TDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATS 334

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           ++DMY KCG  + A + F+GM +K++ SW AM+ G  MHG   +AL +F +M   G  P+
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
             TF+ VL AC+HAGF+++G ++F +M  +Y + P VEHYGCM+DLLGR+G +KEA  L+
Sbjct: 395 YITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLI 454

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531
           +SM V  + ++WG+LL ACR H  VELAE     L +L  S+ G Y +L+NI+A  G W 
Sbjct: 455 KSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWK 514

Query: 532 KVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            V  +R+ +K     KP G S VE+   VH F V D+ HP+ E+IY+ +  L   L+  G
Sbjct: 515 DVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAG 574

Query: 592 HAAKLSA 598
           +   +++
Sbjct: 575 YVPNMAS 581



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 145/324 (44%), Gaps = 50/324 (15%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           IK+ L +   +   L+ + A C ++ L+ KVF+D+ + DV  +N++I    QN L+  AF
Sbjct: 219 IKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAF 278

Query: 101 RVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
            VF  M + G    N  T   LL AC  +    +   +H  + K GY  ++ +  S+ID 
Sbjct: 279 EVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDM 338

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL--------------------VK---- 195
           Y KCG     +A+  F  M E+++ SW +MIAG                     VK    
Sbjct: 339 YCKCG--QAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396

Query: 196 -----------GGELSEARRLFDEMPERDAVS-----WNTILDGYAKAGEMNLAFELFEK 239
                       G L E  R F+ M     V      +  ++D   +AG +  A+ L + 
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456

Query: 240 IP-HRNIVSWSTMVWGYSKDGDMEMAKL----LFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           +   R+ V W +++       D+E+A++    LF   P+     + ++ + YA+ G  K+
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGY-YVLLANIYADAGRWKD 515

Query: 295 AARLYDQMEEAGL-KPDDGTLISI 317
             R+   +++ GL KP   +L+ +
Sbjct: 516 VERMRILVKDRGLVKPPGYSLVEL 539



 Score = 45.1 bits (105), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 20/187 (10%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           L  Q+IK+    +  +A  +I     C Q  +A   F+ +++ +V  +  +I     +  
Sbjct: 316 LHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGF 375

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFG 148
             +A  VF  M   GV  +  T+  +L AC+       G  WF+ +   + +     ++G
Sbjct: 376 AREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYG 435

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAG--LVKGGELSE--AR 203
                  ++D   + G   +  A  L  SM   RD V W S++A   + K  EL+E  AR
Sbjct: 436 ------CMVDLLGRAGY--IKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISAR 487

Query: 204 RLFDEMP 210
            LF   P
Sbjct: 488 ELFKLDP 494


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/581 (31%), Positives = 316/581 (54%), Gaps = 11/581 (1%)

Query: 22  QNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           ++    ++++  +QL   I+K        +   L++     +++  A KVF+++ + DV 
Sbjct: 52  KSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVI 111

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            +N++I   V N L  +   VF+ M   G+  D  T   +   C       L + +H++ 
Sbjct: 112 SWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIG 171

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K  +  +    N+L+D YSKCG   +  AK +F  M +R +VS+ SMIAG  + G   E
Sbjct: 172 VKACFSREDRFCNTLLDMYSKCG--DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGE 229

Query: 202 ARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN----IVSWSTMVW 253
           A +LF+EM E     D  +   +L+  A+   ++    + E I   +    I   + ++ 
Sbjct: 230 AVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMD 289

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDG 312
            Y+K G M+ A+L+F  M  K ++ W  II GY++   A EA  L++ + EE    PD+ 
Sbjct: 290 MYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDER 349

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T+  +L ACA       G ++H  I +  +  + +V N+LVDMYAKCG+L  A  +F+ +
Sbjct: 350 TVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDI 409

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             KDLVSW  M+ G  MHG G++A+ LF++M+  G   D+ +FV +L AC+H+G +D+G 
Sbjct: 410 ASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGW 469

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           ++F  M  +  I P VEHY C++D+L R+G L +A R +++MP+ P+A IWG LL  CR 
Sbjct: 470 RFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRI 529

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H+ V+LAE+V + +  L+  + G Y +++NI+A    W +V  +R ++ +   +K  G S
Sbjct: 530 HHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCS 589

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            +E+   V+ F   D  +P++E I   +  +   +   G++
Sbjct: 590 WIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 630



 Score =  185 bits (469), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 143/503 (28%), Positives = 239/503 (47%), Gaps = 48/503 (9%)

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           F++++      +N L+    ++   + +  +F  M   GV  D++T+  + K+ +     
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
           H  + +H  I K G+     V NSL+  Y K     V  A+K+F  M ERD++SWNS+I 
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ--RVDSARKVFDEMTERDVISWNSIIN 118

Query: 192 GLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHR 243
           G V  G   +   +F +M     E D  +  ++  G A +  ++L   +     +    R
Sbjct: 119 GYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSR 178

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
                +T++  YSK GD++ AK +F  M  +++V +T +I+GYA +G+A EA +L+++ME
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
           E G+ PD  T+ ++L  CA   LL  G +VH  I +     +  V NAL+DMYAKCGS+ 
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQ 298

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCAC 422
            A  VF+ M  KD++SWN ++ G + +    +AL LF+ + +E  F PD+ T   VL AC
Sbjct: 299 EAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC 358

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL------------------ 464
                 DKG +    + R+ G          ++D+  + G L                  
Sbjct: 359 ASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSW 417

Query: 465 -------------KEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
                        KEA+ L   M    +E + I + +LL AC     V+      + +  
Sbjct: 418 TVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRH 477

Query: 509 LKGSDPG--NYTMLSNIFAATGD 529
               +P   +Y  + ++ A TGD
Sbjct: 478 ECKIEPTVEHYACIVDMLARTGD 500


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 184/575 (32%), Positives = 314/575 (54%), Gaps = 11/575 (1%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++++  +QL   I+K        +   L++     +++  A KVF+++ + DV  +N++I
Sbjct: 209 RSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSII 268

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              V N L  +   VF+ M   G+  D  T   +   C       L + +H++  K  + 
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFS 328

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +    N+L+D YSKCG   +  AK +F  M +R +VS+ SMIAG  + G   EA +LF+
Sbjct: 329 REDRFCNTLLDMYSKCG--DLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE 386

Query: 208 EMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN----IVSWSTMVWGYSKDG 259
           EM E     D  +   +L+  A+   ++    + E I   +    I   + ++  Y+K G
Sbjct: 387 EMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCG 446

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISIL 318
            M+ A+L+F  M  K ++ W  II GY++   A EA  L++ + EE    PD+ T+  +L
Sbjct: 447 SMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVL 506

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            ACA       G ++H  I +  +  + +V N+LVDMYAKCG+L  A  +F+ +  KDLV
Sbjct: 507 PACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW  M+ G  MHG G++A+ LF++M+  G   D+ +FV +L AC+H+G +D+G ++F  M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             +  I P VEHY C++D+L R+G L +A R +++MP+ P+A IWG LL  CR H+ V+L
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE+V + +  L+  + G Y +++NI+A    W +V  +R ++ +   +K  G S +E+  
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKG 746

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
            V+ F   D  +P++E I   +  +   +   G++
Sbjct: 747 RVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYS 781



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 158/565 (27%), Positives = 260/565 (46%), Gaps = 48/565 (8%)

Query: 10  WFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           W    R L   LQ     K+L   K++   I       D  +  KL      C  +  A 
Sbjct: 90  WDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEAS 149

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           +VF++++      +N L+    ++   + +  +F  M   GV  D++T+  + K+ +   
Sbjct: 150 RVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLR 209

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             H  + +H  I K G+     V NSL+  Y K     V  A+K+F  M ERD++SWNS+
Sbjct: 210 SVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQ--RVDSARKVFDEMTERDVISWNSI 267

Query: 190 IAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFEL----FEKIP 241
           I G V  G   +   +F +M     E D  +  ++  G A +  ++L   +     +   
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            R     +T++  YSK GD++ AK +F  M  +++V +T +I+GYA +G+A EA +L+++
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           MEE G+ PD  T+ ++L  CA   LL  G +VH  I +     +  V NAL+DMYAKCGS
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLC 420
           +  A  VF+ M  KD++SWN ++ G + +    +AL LF+ + +E  F PD+ T   VL 
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL---------------- 464
           AC      DKG +    + R+ G          ++D+  + G L                
Sbjct: 508 ACASLSAFDKGREIHGYIMRN-GYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566

Query: 465 ---------------KEALRLVQSMP---VEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
                          KEA+ L   M    +E + I + +LL AC     V+      + +
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 507 IRLKGSDPG--NYTMLSNIFAATGD 529
                 +P   +Y  + ++ A TGD
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGD 651


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 195/578 (33%), Positives = 301/578 (52%), Gaps = 11/578 (1%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K L    QL AQI+   L R     P +  +      + +A K FN I   ++H +NT++
Sbjct: 26  KTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTIL 85

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            +  +N       ++F  M ++G   D+F   F +KAC G + F   ++ H+L  K    
Sbjct: 86  ASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLE 145

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
           GD +V  +L++ Y++ G   +  A K+F  +  ++ V W  MI G +   E      LF 
Sbjct: 146 GDPYVAPALMNVYTELG--SLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFS 203

Query: 208 EMP----ERDAVSWNTILD--GYAKAGEMNLAFE---LFEKIPHRNIVSWSTMVWGYSKD 258
            M     E D      ++   G   AG+    F    + +     N    +++V  Y K 
Sbjct: 204 RMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKC 263

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G ++ A  LF+ +  + +V W+ II+G+A  G A E+  ++ QM    + P+  T  SI+
Sbjct: 264 GFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV 323

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            AC+  G L  G  VH  + +   + +     + +DMYAKCG +  A  VF  + +K++ 
Sbjct: 324 LACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVF 383

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SW+ M+ G  MHG   +AL LF  M+     P+  TFV VL AC+H+G I++G  +F SM
Sbjct: 384 SWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSM 443

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            RDYGI P  EHY CM+DLLGR+G++ EAL  + +MP EP A  WG LLGACR H   EL
Sbjct: 444 SRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAEL 503

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AEEV   L+ L+    G Y MLSNI+A  G W  V   RL+M +    K  G +S+E++ 
Sbjct: 504 AEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEE 563

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
           +++ FS  D+   K+ QI  + N+L + ++ +G+   L
Sbjct: 564 KLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDL 601


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/588 (32%), Positives = 313/588 (53%), Gaps = 16/588 (2%)

Query: 13  KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVF 72
           +RR++ + L+   +  +L    QL A ++KL    D  +   LI   A C ++ +A +VF
Sbjct: 199 RRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVF 258

Query: 73  NDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132
           + + + +V  +  L+   + +    +  R+F +M+  G   + FT    LKAC G     
Sbjct: 259 DGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAG 318

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           +   IH +  + G+ G   V NSL+  YSK    G   A+++F  +  R++ +WNSMI+G
Sbjct: 319 V--QIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGD--ARRVFDVIPSRNLATWNSMISG 374

Query: 193 LVKGGELSEARRLFDEMPER-----DAVSWNTILD-----GYAKAG-EMNLAFELFEKIP 241
               G+  ++  +F EM  R     D  ++ ++L      G A+ G +++ A  +    P
Sbjct: 375 YAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSP 434

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
             N +    ++  Y K   + +A  +FD +  +  + WT +I G+A++G  KEA  L+ +
Sbjct: 435 ASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRR 494

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
              +G++ D   L S++A  A+  L+  G +VH    K     + +V N+LVDMY KCG 
Sbjct: 495 FWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKCGL 554

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
              A   F  M  +++VSW AM+ G+  HG G +A+ LF  M+ EG   D+  ++ +L A
Sbjct: 555 TGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALLSA 614

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C+H+G +D+  +YF  + +D  + P+ EHY CM+DLLGR+G L+EA  L+ SMP+EP   
Sbjct: 615 CSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPTVG 674

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           +W TLL ACR H  V +  EV D L+ + G +P NY MLSNI A  G+W +   +R  M+
Sbjct: 675 VWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGAMR 734

Query: 542 KTRAQKPSGASSVEVDNEVHEF-SVCDQLHPKSEQIYQMINTLGKDLK 588
           +   +K  G S  EVD EVH F    D  HP++  I + +  +   ++
Sbjct: 735 RKGLRKQGGCSWTEVDKEVHFFYGGGDDAHPQAGDIRRALREVEARMR 782


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 176/473 (37%), Positives = 262/473 (55%), Gaps = 67/473 (14%)

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV------ 168
           NFT PF LK             +HA + K          NS + S     V  V      
Sbjct: 24  NFTSPFELK------------QLHAHLLK---------TNSPLSSLPLSRVASVCAFNSS 62

Query: 169 -SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA------RRLFDEMPERDAVSW---- 217
            S AK +F  +   ++  WN+ +    +G   ++A       R FD  P+    S+    
Sbjct: 63  FSYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKA 122

Query: 218 -----------------------------NTILDGYAKAGEMNLAFELFEKIPHRNIVSW 248
                                        N I+  YA  GE+ +A ++F+K+P R++++W
Sbjct: 123 CSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITW 182

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + M+    K GD E A  LF  MP + +  WT +I GYA+ G +KEA  L+ +ME+AGL 
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLL 242

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
           P++ T++++L ACA+ G L LG ++H   N+  ++ N  VCN L+DMY KCG L++A  +
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           F+ M ++ +VSW+AM+ GLA HG+ E AL LF++M + G  P+  TF+G+L AC+H G +
Sbjct: 303 FDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMV 362

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           +KG +YF SM RDYGI+P++EHYGCM+DL  R+G L+EA   + +MP+ PN ++WG LLG
Sbjct: 363 EKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
            C+ H  V+LAEE    L +L   + G Y +LSNI+A  G W  VA VR  M+
Sbjct: 423 GCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMR 475



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 199/408 (48%), Gaps = 43/408 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           LH   +  + KQL A ++K +         ++ S  A       A  +F  +   +V  +
Sbjct: 22  LHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHW 81

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           NT +R+  +    A A  +F  ++E  +  D++T  F+LKAC+        +++H  + K
Sbjct: 82  NTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEK 141

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   ++F+ N ++  Y+ CG +GV  A+K+F  M +RD+++WN MIA LVK G+   A 
Sbjct: 142 LGLQSNMFLQNMIVHLYALCGEIGV--ARKVFDKMPQRDVITWNIMIARLVKMGDAEGAY 199

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP---------------------- 241
           +LF EMPER+  SW +++ GYA+ G+   A +LF ++                       
Sbjct: 200 KLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMG 259

Query: 242 -----------------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
                             +NI   +T++  Y K G +E A  +FD M  +T+V W+ +I+
Sbjct: 260 NLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIA 319

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFK 343
           G A  G A++A  L+++M   G+KP+  T I IL AC+  G++  G K  AS+ + Y   
Sbjct: 320 GLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIV 379

Query: 344 CNTNVCNALVDMYAKCGSLDNAMS-VFNGMTKKDLVSWNAMLYGLAMH 390
                   +VD++++ G L  A   + N     + V W A+L G  +H
Sbjct: 380 PRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVH 427



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 158/403 (39%), Gaps = 79/403 (19%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++   K +   + KL LQ + ++   ++   ALC ++G+A KVF+ +   DV  +N +I 
Sbjct: 128 DVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIA 187

Query: 89  ACV-------------------------------QNSLNAQAFRVFLDMQEKGVFTDNFT 117
             V                               Q   + +A  +FL+M++ G+  +  T
Sbjct: 188 RLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVT 247

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
              +L AC       L + IH    + GY  +I V N+LID Y                 
Sbjct: 248 VVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMY----------------- 290

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
                           VK G L +A R+FD M ER  VSW+ ++ G A  G    A  LF
Sbjct: 291 ----------------VKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALF 334

Query: 238 EKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVP----WTIIISGYAE 288
            K+ +     N V++  ++   S  G +E  +  F  M     +VP    +  ++  ++ 
Sbjct: 335 NKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSR 394

Query: 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348
            G+ +EA      M  A   P+     ++L  C     + L  +    ++K     N   
Sbjct: 395 AGLLQEAHEFIMNMPIA---PNGVVWGALLGGCKVHKNVKLAEEATRHLSKLD-PLNDGY 450

Query: 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
              L ++YA+ G  ++   V   M  +D  +W  +L  + + G
Sbjct: 451 YVVLSNIYAEAGRWEDVARVRKLM--RDRGTWEKLLQRMKLKG 491


>gi|449464272|ref|XP_004149853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
 gi|449520209|ref|XP_004167126.1| PREDICTED: pentatricopeptide repeat-containing protein At5g55740,
           chloroplastic-like [Cucumis sativus]
          Length = 840

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 181/527 (34%), Positives = 289/527 (54%), Gaps = 43/527 (8%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           VF+++ + D   +N L+   V N L  +A  +   MQ + +  D+ T   ++ A      
Sbjct: 339 VFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENLRFDSVTLASIMAAAADSRN 398

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             L +  H+   +     D+ V +S+ID Y+KC                           
Sbjct: 399 LKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCE-------------------------- 432

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF-----EKIPHRNI 245
                  +L  ARR+FD   +RD + WNT+L  YA+ G      +LF     E +P  N+
Sbjct: 433 -------KLECARRVFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLP-PNV 484

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           +SW++++ G    G ++ AK  F  M +      L+ WT +I G A+ G+  EA   +  
Sbjct: 485 ISWNSVILGLLNKGKVDQAKDTFMEMQSLGICPNLITWTTLICGLAQNGLGDEAFLTFQS 544

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           MEEAG+KP+  ++ S+L+AC+    L  G  +H  I ++    +T V  +LV+MYAKCGS
Sbjct: 545 MEEAGIKPNSLSISSLLSACSTMASLPHGRAIHCYITRHELSVSTPVLCSLVNMYAKCGS 604

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           ++ A  VF+ + KK+L  +NAM+ G A+HGQ  +AL LF R+K+E   PD+ TF  +L A
Sbjct: 605 INQAKRVFDMILKKELPVYNAMISGYALHGQAVEALSLFRRLKEECIKPDEITFTSILSA 664

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C HAG + +G++ F  M  ++ I+ Q EHYGC++ +L RS  L EALR++  MP EP+A 
Sbjct: 665 CGHAGLVREGLELFIDMVSNHKIVAQAEHYGCLVSILSRSHNLDEALRIILGMPFEPDAF 724

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           I+G+LL ACR+H   EL E + + L++L+  + GNY  LSN +AATG W++ + VR  MK
Sbjct: 725 IFGSLLAACREHPDFELKERLFERLLKLEPDNSGNYVALSNAYAATGMWDEASKVRGLMK 784

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           +    K  G S +++ N+ H F   D+ H ++++IY M+  L  +++
Sbjct: 785 ERSLSKIPGHSLIQIGNKTHVFFAGDKSHSRTKEIYMMLALLRVEMQ 831



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 159/535 (29%), Positives = 256/535 (47%), Gaps = 23/535 (4%)

Query: 19  EKLQNLHKCKNLNQTKQLFAQIIK--LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           E LQ     + L+  +Q+  +I+K    + ++ YI  KL+   + C +  +A ++F  +Q
Sbjct: 83  ELLQGCVYERALSLGQQIHGRILKNGESIAKNEYIETKLVIFYSKCDESEIANRLFGKLQ 142

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             +   +  ++    +   N +A   F +M E G+  DNF  P   KA     W    + 
Sbjct: 143 VQNEFSWAAIMGLKSRMGFNQEALMGFREMHEYGLLLDNFVIPIAFKASGALRWIGFGKS 202

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +HA + K G  G I+V  SL+D Y KCG+     AKK+F  + E++IV+WNSMI    + 
Sbjct: 203 VHAYVVKMGLGGCIYVATSLLDMYGKCGLC--EEAKKVFDKILEKNIVAWNSMIVNFTQN 260

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKA---------GEMNLAFELFEKIPHRNIVS 247
           G  +EA   F EM           L  +  A         G+   A  +   +   NI+ 
Sbjct: 261 GLNAEAVETFYEMRVEGVAPTQVTLSSFLSASANLSVIDEGKQGHALAVLSGLELTNILG 320

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
            S+++  YSK G +E A+L+F  M  K  V W +++SGY   G+   A  L   M+   L
Sbjct: 321 -SSLINFYSKVGLVEDAELVFSEMLEKDTVTWNLLVSGYVHNGLVDRALDLCHVMQSENL 379

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           + D  TL SI+AA A+S  L LG + H+   +   + +  V ++++DMYAKC  L+ A  
Sbjct: 380 RFDSVTLASIMAAAADSRNLKLGKEGHSFCVRNNLESDVAVASSIIDMYAKCEKLECARR 439

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF 427
           VF+   K+DL+ WN +L   A  G   + L LF +M+ EG  P+  ++  V+    + G 
Sbjct: 440 VFDATAKRDLIMWNTLLAAYAEQGHSGETLKLFYQMQLEGLPPNVISWNSVILGLLNKGK 499

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWG 484
           +D+    F  M+   GI P +  +  +I  L ++G   EA    QSM    ++PN++   
Sbjct: 500 VDQAKDTFMEMQ-SLGICPNLITWTTLICGLAQNGLGDEAFLTFQSMEEAGIKPNSLSIS 558

Query: 485 TLLGACRKHNAVELAEEVLDCLI---RLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           +LL AC    ++     +  C I    L  S P     L N++A  G  N+   V
Sbjct: 559 SLLSACSTMASLPHGRAI-HCYITRHELSVSTP-VLCSLVNMYAKCGSINQAKRV 611



 Score = 38.9 bits (89), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD----PDVH 81
           KC ++NQ K++F  I+K +L     +   +IS  AL  Q   A+ +F  +++    PD  
Sbjct: 601 KCGSINQAKRVFDMILKKELP----VYNAMISGYALHGQAVEALSLFRRLKEECIKPDEI 656

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDM 106
            + +++ AC    L  +   +F+DM
Sbjct: 657 TFTSILSACGHAGLVREGLELFIDM 681


>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
          Length = 467

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 183/522 (35%), Positives = 279/522 (53%), Gaps = 72/522 (13%)

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +IR   Q+    +   ++  M E     + FTY FL+  C         + +H  +   G
Sbjct: 1   MIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGGCARSRLLREGEQVHGRVVANG 60

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           Y  ++FV  SL++ Y+                            IAG   G  + +ARR+
Sbjct: 61  YCTNVFVRTSLVNLYA----------------------------IAGGYDG--VRKARRV 90

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FDE+ +R                               NIVSW++++ GY + GD++ A+
Sbjct: 91  FDEIVDR-------------------------------NIVSWNSLLAGYVRCGDVDGAR 119

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            +FD MP + +V WT +I+G A+ G  K+A  L+ +M  AG+K D   L++ L+ACAE G
Sbjct: 120 RIFDEMPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELG 179

Query: 326 LLGLGMKVHASINKYRFKCN----TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
            L LG  +H+ I++     N     ++ N+L+ MYA CG +D A  VF GM ++  +SW 
Sbjct: 180 DLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHMYASCGVIDKAYKVFIGMQQRSTISWT 239

Query: 382 AMLYGLAMHGQGEKALGLFSRMK----DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           +M+ G A  G  E+ALG+F  M+    DEG  PD  TF+GVLCAC+HAGF+D+G  +F  
Sbjct: 240 SMITGFAKQGHAEEALGVFQWMQRLGTDEGR-PDGITFIGVLCACSHAGFVDQGRHFFEC 298

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M + +GI+P++EHYGCM+DLL R+G L EA RL++SMP++PN  +WG LLG CR H   E
Sbjct: 299 MNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAE 358

Query: 498 LAEEVLDCL-IRLKGSDPGNY-TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           LA  V   L + LK      Y  +LSN++A    W  VA VR +M +   +KP+G S V+
Sbjct: 359 LASHVAQKLALELKPDQAAGYLVLLSNVYATAKRWQDVALVRQKMVEIGVRKPAGRSWVQ 418

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           ++  VH+F   D  H  +  +Y+M++ + +  K  G+   +S
Sbjct: 419 INGVVHDFVAGDWTHKHASSVYEMLSKITRQAKLEGYKLDIS 460



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 134/298 (44%), Gaps = 24/298 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +++F +I+     R+      L++    C  +  A ++F+++ + +V  + T+I  
Sbjct: 84  VRKARRVFDEIV----DRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAG 139

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
           C Q     QA  +F +M+  GV  D       L AC       L   IH+ I +  + G+
Sbjct: 140 CAQIGRCKQALHLFHEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGN 199

Query: 150 ----IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA--- 202
               + + NSLI  Y+ CGV  +  A K+F+ M +R  +SW SMI G  K G   EA   
Sbjct: 200 QPLLVSLNNSLIHMYASCGV--IDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGV 257

Query: 203 ----RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTMVW 253
               +RL  +    D +++  +L   + AG ++     FE +  +      I  +  MV 
Sbjct: 258 FQWMQRLGTDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVD 317

Query: 254 GYSKDGDMEMAKLLFDRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
             S+ G ++ A  L + MP K     W  ++ G      A+ A+ +  ++    LKPD
Sbjct: 318 LLSRAGFLDEAHRLIESMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALE-LKPD 374


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/609 (31%), Positives = 306/609 (50%), Gaps = 72/609 (11%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S+ A    +  A +VF++I  PD   + T+I       L   A   FL M   G+   
Sbjct: 85  ILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPT 144

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG---------- 164
            FT+  +L +C       + + +H+ + K G  G + V NSL++ Y+KCG          
Sbjct: 145 QFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFD 204

Query: 165 -------------------VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
                                   LA  LF  M + DIVSWNS+I G    G    A   
Sbjct: 205 RMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALET 264

Query: 206 FDEMPERDAVS----------------------------------------WNTILDGYA 225
           F  M +  ++                                          N ++  YA
Sbjct: 265 FSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324

Query: 226 KAGEMNLAFELFE--KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           K+G + +A  + E    P  N++++++++ GY K GD++ A+ +FD +  + +V WT +I
Sbjct: 325 KSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
            GYA+ G+  +A  L+  M   G KP++ TL ++L+  +    L  G ++HA   +    
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV 444

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
            + +V NAL+ MY++ GS+ +A  +FN + + +D ++W +M+  LA HG G +A+ LF +
Sbjct: 445 SSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEK 504

Query: 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462
           M      PD  T+VGVL ACTH G +++G  YF  M+  + I P   HY CMIDLLGR+G
Sbjct: 505 MLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAG 564

Query: 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522
            L+EA   +++MP+EP+ + WG+LL +CR H  V+LA+   + L+ +  ++ G Y  L+N
Sbjct: 565 LLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALAN 624

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
             +A G W   A VR  MK    +K  G S V++ N+VH F V D LHP+ + IY MI+ 
Sbjct: 625 TLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISK 684

Query: 583 LGKDLKPVG 591
           + K++K +G
Sbjct: 685 IWKEIKKMG 693



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 131/477 (27%), Positives = 205/477 (42%), Gaps = 114/477 (23%)

Query: 137 IHALIYKCG--YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           IHA I K G  Y G +F+ N+L++ Y K G    S A +LF  M  +   SWN++++   
Sbjct: 34  IHARIIKHGLRYLG-VFLTNNLLNLYVKTG--SSSDAHRLFDEMPLKTTFSWNTILSAHA 90

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-------------- 240
           K G L  ARR+FDE+P+ D+VSW T++ GY   G    A   F ++              
Sbjct: 91  KAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTN 150

Query: 241 ----------------PHRNIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAK- 274
                            H  +V           ++++  Y+K GD  MAK++FDRM  K 
Sbjct: 151 VLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKD 210

Query: 275 ------------------------------TLVPWTIIISGYAEKGMAKEAARLYDQM-E 303
                                          +V W  II+GY  +G    A   +  M +
Sbjct: 211 TSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLK 270

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS-- 361
            + LKPD  TL S+L+ACA    L LG ++HA I +        V NAL+ MYAK G+  
Sbjct: 271 SSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVE 330

Query: 362 -------------------------------LDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
                                          +D A ++F+ +  +D+V+W AM+ G A +
Sbjct: 331 VAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQN 390

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G    AL LF  M  EG  P+ YT   VL   +    +D G Q  +++      +  V  
Sbjct: 391 GLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQ-LHAVAIRLEEVSSVSV 449

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVL 503
              +I +  RSG +K+A ++   +    + + W +++ +  +H     A+EL E++L
Sbjct: 450 GNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKML 506



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 161/354 (45%), Gaps = 67/354 (18%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246
           N+++   VK G  S+A RLFDEMP +   SWNTIL  +AKAG ++ A  +F++IP  + V
Sbjct: 52  NNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSV 111

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           SW+TM+ GY+                                 G+ K A   + +M  +G
Sbjct: 112 SWTTMIVGYN-------------------------------HLGLFKSAVHAFLRMVSSG 140

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG------ 360
           + P   T  ++LA+CA +  L +G KVH+ + K        V N+L++MYAKCG      
Sbjct: 141 ISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAK 200

Query: 361 -------------------------SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
                                      D A+++F+ MT  D+VSWN+++ G    G   +
Sbjct: 201 VVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIR 260

Query: 396 ALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER-DYGILPQVEHYGC 453
           AL  FS M K     PDK+T   VL AC +   +  G Q    + R D  I   V     
Sbjct: 261 ALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVG--NA 318

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEP-NAIIWGTLLGACRKHNAVELAEEVLDCL 506
           +I +  +SG ++ A R+V+       N I + +LL    K   ++ A  + D L
Sbjct: 319 LISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSL 372



 Score = 46.2 bits (108), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLI 87
           +L+  KQL A  I+L+      +   LI+  +    +  A K+FN I    D   + ++I
Sbjct: 427 SLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHAL 140
            +  Q+ L  +A  +F  M    +  D+ TY  +L AC        GK++F+L++ +H +
Sbjct: 487 LSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNI 546

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAG 192
                ++        +ID   + G+  +  A     +M  E D+V+W S+++ 
Sbjct: 547 EPTSSHYA------CMIDLLGRAGL--LEEAYNFIRNMPIEPDVVAWGSLLSS 591


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/559 (33%), Positives = 311/559 (55%), Gaps = 13/559 (2%)

Query: 36   LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
            + A +IK     D ++    +     C  +  A KVF  + + D   +N ++    Q+  
Sbjct: 680  VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGH 739

Query: 96   NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
              +AF +F +M+   +  D+ T   L+++ + +    L++ +HA+  + G    + V N+
Sbjct: 740  TDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLGVDVQVTVANT 799

Query: 156  LIDSYSKCGVVGVSLAKKLFMSM--GERDIVSWNSMIAGLVKGGELSEARRLF----DEM 209
             I +Y KCG   +  AK +F ++  G+R +VSWNSM       GE  +A  L+     E 
Sbjct: 800  WISTYGKCG--DLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREE 857

Query: 210  PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAK 265
             + D  ++  +         +     +     H    ++I + +T +  YSK  D   A+
Sbjct: 858  FKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSAR 917

Query: 266  LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LLFD M ++T V WT++ISGYAEKG   EA  L+  M ++G KPD  TL+S+++ C + G
Sbjct: 918  LLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFG 977

Query: 326  LLGLGMKVHASINKYRFKC-NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L  G  + A  + Y  K  N  +CNAL+DMY+KCGS+  A  +F+   +K +V+W  M+
Sbjct: 978  SLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMI 1037

Query: 385  YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
             G A++G   +AL LFS+M D  + P+  TF+ VL AC H+G ++KG +YF+ M++ Y I
Sbjct: 1038 AGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNI 1097

Query: 445  LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
             P ++HY CM+DLLGR G+L+EAL L+++M  +P+A IWG LL AC+ H  V++AE+  +
Sbjct: 1098 SPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAE 1157

Query: 505  CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
             L  L+      Y  ++NI+AA G W+  A +R  MK+   +K  G S ++V+ + H F+
Sbjct: 1158 SLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFT 1217

Query: 565  VCDQLHPKSEQIYQMINTL 583
            V +  H ++E IY  +N L
Sbjct: 1218 VGEHGHVENEVIYFTLNGL 1236



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 197/431 (45%), Gaps = 35/431 (8%)

Query: 80   VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
            V+ +N  IR  V  +   ++  +F +M+  G   +NFT+PF+ KAC         +M+HA
Sbjct: 623  VNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHA 682

Query: 140  LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
             + K  ++ D+FV  + +D + KC    V  A K+F  M ERD  +WN+M++G  + G  
Sbjct: 683  HLIKSPFWSDVFVGTATVDMFVKCN--SVDYAAKVFERMPERDATTWNAMLSGFCQSGHT 740

Query: 200  SEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWST 250
             +A  LF EM       D+V+  T++   +    + L  E    +  R      +   +T
Sbjct: 741  DKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKL-LEAMHAVGIRLGVDVQVTVANT 799

Query: 251  MVWGYSKDGDMEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
             +  Y K GD++ AKL+F+ +    +T+V W  +   Y+  G A +A  LY  M     K
Sbjct: 800  WISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFK 859

Query: 309  PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
            PD  T I++ A+C     L  G  +H+         +    N  + MY+K     +A  +
Sbjct: 860  PDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLL 919

Query: 369  FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
            F+ MT +  VSW  M+ G A  G  ++AL LF  M   G  PD  T + ++  C   G  
Sbjct: 920  FDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFG-- 977

Query: 429  DKGVQYFYSMERDYGILPQVEHYGC----------MIDLLGRSGRLKEALRLVQSMPVEP 478
                    S+E    I  + + YGC          +ID+  + G + EA  +  + P E 
Sbjct: 978  --------SLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTP-EK 1028

Query: 479  NAIIWGTLLGA 489
              + W T++  
Sbjct: 1029 TVVTWTTMIAG 1039



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 89/379 (23%), Positives = 161/379 (42%), Gaps = 22/379 (5%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           + ++L+   G   + +WN  I   V   +  E+  LF EM +R     N     +     
Sbjct: 610 IHRRLYRISGLSSVNAWNLQIREAVNRNDPVESLLLFREM-KRGGFEPNNFTFPFVAKAC 668

Query: 230 MNLAFELFEKIPHRNIVS---WSTMVWG------YSKDGDMEMAKLLFDRMPAKTLVPWT 280
             LA     ++ H +++    WS +  G      + K   ++ A  +F+RMP +    W 
Sbjct: 669 ARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWN 728

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            ++SG+ + G   +A  L+ +M    + PD  T+++++ + +    L L   +HA   + 
Sbjct: 729 AMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRL 788

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALG 398
                  V N  +  Y KCG LD+A  VF  + + D  +VSWN+M    ++ G+   A G
Sbjct: 789 GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFG 848

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           L+  M  E F PD  TF+ +  +C +   + +G +  +S     G    +E     I + 
Sbjct: 849 LYCLMLREEFKPDLSTFINLAASCQNPETLTQG-RLIHSHAIHLGTDQDIEAINTFISMY 907

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
            +S     A RL+  +      + W  ++    +   ++ A  +   +I+  G  P   T
Sbjct: 908 SKSEDTCSA-RLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIK-SGEKPDLVT 965

Query: 519 MLSNIFA-------ATGDW 530
           +LS I          TG W
Sbjct: 966 LLSLISGCGKFGSLETGKW 984



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 110/262 (41%), Gaps = 17/262 (6%)

Query: 27   CKN---LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
            C+N   L Q + + +  I L   +D       IS  +       A  +F+ +       +
Sbjct: 872  CQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSW 931

Query: 84   NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL--I 141
              +I    +     +A  +F  M + G   D  T   L+  C         + I A   I
Sbjct: 932  TVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADI 991

Query: 142  YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            Y C    ++ + N+LID YSKCG   +  A+ +F +  E+ +V+W +MIAG    G   E
Sbjct: 992  YGCKR-DNVMICNALIDMYSKCG--SIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLE 1048

Query: 202  ARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMV 252
            A +LF +M + D     +++  +L   A +G +   +E F  +     +S     +S MV
Sbjct: 1049 ALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMV 1108

Query: 253  WGYSKDGDMEMAKLLFDRMPAK 274
                + G +E A  L   M AK
Sbjct: 1109 DLLGRKGKLEEALELIRNMSAK 1130


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 199/598 (33%), Positives = 316/598 (52%), Gaps = 15/598 (2%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           +R    +  R ++   L      + L   KQ+   +++     D  +   +I     C +
Sbjct: 246 MREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHK 305

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124
           +    K+FN + D DV  + T+I  C+QNS +  A  +F++M  KG   D F    +L +
Sbjct: 306 VKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNS 365

Query: 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV 184
           C         + +HA   K     D FV N LID Y+KC    ++ A+K+F  +   ++V
Sbjct: 366 CGSLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCD--SLTNARKVFDLVAAINVV 423

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-HR 243
           S+N+MI G  +  +L EA  LF EM  R ++S  T+L   +  G  +  F L      H 
Sbjct: 424 SYNAMIEGYSRQDKLVEALDLFREM--RLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHC 481

Query: 244 NIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            I+ +         S ++  YSK   +  A+L+F+ +  + +V W  + SGY+++   +E
Sbjct: 482 LIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEE 541

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           + +LY  ++ + LKP++ T  +++AA +    L  G + H  + K     +  V N+LVD
Sbjct: 542 SLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHGQQFHNQVIKMGLDDDPFVTNSLVD 601

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAKCGS++ +   F+   ++D+  WN+M+   A HG   KAL +F RM  EG  P+  T
Sbjct: 602 MYAKCGSIEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVT 661

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           FVG+L AC+HAG +D G  +F SM + +GI P ++HY CM+ LLGR+G++ EA   V+ M
Sbjct: 662 FVGLLSACSHAGLLDLGFHHFESMSK-FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKM 720

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P++P A++W +LL ACR    VEL     +  I    +D G+Y +LSNIFA+ G W  V 
Sbjct: 721 PIKPAAVVWRSLLSACRVSGHVELGTYAAEMAISCDPADSGSYILLSNIFASKGMWASVR 780

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            VR +M  +R  K  G S +EV+NEVH F   D  H  S  I  +++ L   +K  G+
Sbjct: 781 MVREKMDMSRVVKEPGWSWIEVNNEVHRFIARDTAHRDSTLISLVLDNLILQIKGFGY 838



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/507 (24%), Positives = 241/507 (47%), Gaps = 16/507 (3%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL+Q  QL   ++K    +D Y+   LI   A    +  A  +F+ ++      +  +I 
Sbjct: 169 NLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIA 228

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              +   +  + ++F  M+E  V+ D +    +L AC+   +    + IH  + + G+  
Sbjct: 229 GYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDM 288

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D+ V N +ID Y KC    V   +KLF  + ++D+VSW +MIAG ++     +A  LF E
Sbjct: 289 DVSVVNGIIDFYLKCH--KVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVE 346

Query: 209 MPER----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
           M  +    DA    ++L+        + G    A+ +   I + + V  + ++  Y+K  
Sbjct: 347 MVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVNIDNDDFVK-NGLIDMYAKCD 405

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +  A+ +FD + A  +V +  +I GY+ +    EA  L+ +M  +   P   T +S+L 
Sbjct: 406 SLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLG 465

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
             +   LL L  ++H  I K+    ++   +AL+D+Y+KC  + +A  VF  +  +D+V 
Sbjct: 466 LSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVV 525

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNAM  G +   + E++L L+  ++     P+++TF  V+ A ++   +  G Q F++  
Sbjct: 526 WNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAASNIASLRHG-QQFHNQV 584

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
              G+         ++D+  + G ++E+ +   S   + +   W +++    +H     A
Sbjct: 585 IKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTN-QRDIACWNSMISTYAQHGDAAKA 643

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAA 526
            EV + +I ++G  P NY     + +A
Sbjct: 644 LEVFERMI-MEGVKP-NYVTFVGLLSA 668



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 167/314 (53%), Gaps = 16/314 (5%)

Query: 132 HLVQMIHALIYKCGYF-GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
           H  + IHA I   G+   D+F+ N+L+ +YSK  +   S A+KLF +M  R++V+W+SM+
Sbjct: 68  HYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQ--SDAQKLFDTMPHRNLVTWSSMV 125

Query: 191 AGLVKGGELSEARRLF-------DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH- 242
           +   + G   EA  LF        E P    ++  +++    + G ++ A +L   +   
Sbjct: 126 SMYTQHGYSVEALLLFCRFMRSCSEKPNEYILA--SVVRACTQLGNLSQALQLHGFVVKG 183

Query: 243 ---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
              +++   ++++  Y+K G ++ A+L+FD +  KT V WT II+GYA+ G ++ + +L+
Sbjct: 184 GFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLF 243

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
           +QM E  + PD   + S+L+AC+    L  G ++H  + +  F  + +V N ++D Y KC
Sbjct: 244 NQMREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKC 303

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
             +     +FN +  KD+VSW  M+ G   +     A+ LF  M  +G+ PD +    VL
Sbjct: 304 HKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVL 363

Query: 420 CACTHAGFIDKGVQ 433
            +C     + KG Q
Sbjct: 364 NSCGSLQALQKGRQ 377



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 186/394 (47%), Gaps = 14/394 (3%)

Query: 34  KQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
           K++ A I+ L   Q D ++   L+ + +       A K+F+ +   ++  +++++    Q
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 93  NSLNAQAFRVFLD-MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
           +  + +A  +F   M+      + +    +++AC           +H  + K G+  D++
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVY 190

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           V  SLID Y+K G   V  A+ +F  +  +  V+W ++IAG  K G    + +LF++M E
Sbjct: 191 VGTSLIDFYAKRGY--VDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMRE 248

Query: 212 RDAVSWNTILDGYAKAGEMNLAF-----ELFEKIPHRNIVSWSTMVWG----YSKDGDME 262
            D      ++     A  M L F     ++   +  R      ++V G    Y K   ++
Sbjct: 249 GDVYPDRYVISSVLSACSM-LEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVK 307

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
             + LF+R+  K +V WT +I+G  +     +A  L+ +M   G KPD     S+L +C 
Sbjct: 308 TGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCG 367

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
               L  G +VHA   K     +  V N L+DMYAKC SL NA  VF+ +   ++VS+NA
Sbjct: 368 SLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNA 427

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           M+ G +   +  +AL LF  M+     P   TFV
Sbjct: 428 MIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 202/568 (35%), Positives = 312/568 (54%), Gaps = 14/568 (2%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL    +K  L+ +  +A  L+S  A C+ +  A ++F  +   D+  +N +I  CVQN 
Sbjct: 269 QLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNG 328

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
           L   A R+F DMQ+ G+  D+ T   LL A    N F   + IH  I +     D+F+ +
Sbjct: 329 LVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVS 388

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA-----RRLFDEM 209
           +L+D Y KC    V +A+ +F +    D+V  ++MI+G V    +SEA     R L    
Sbjct: 389 ALVDIYFKCR--DVRMAQNVFDATKSIDVVIGSTMISGYVLN-RMSEAAVKMFRYLLALG 445

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKI-----PHRNIVSWSTMVWGYSKDGDMEMA 264
            + +AV   + L   A    M +  EL   +       R  V  S ++  YSK G ++++
Sbjct: 446 IKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVE-SALMDMYSKCGRLDLS 504

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F +M AK  V W  +IS +A+ G  +EA  L+ QM   G+K ++ T+ SIL+ACA  
Sbjct: 505 HYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGL 564

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             +  G ++H  I K   + +    +AL+DMY KCG+L+ A+ VF  M +K+ VSWN+++
Sbjct: 565 PAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSII 624

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
                HG  ++++ L   M++EGF  D  TF+ ++ AC HAG + +G++ F  M  +Y I
Sbjct: 625 SAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHI 684

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            PQVEH  CM+DL  R+G+L +A++ +  MP +P+A IWG LL ACR H  VELAE    
Sbjct: 685 EPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIASQ 744

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L +L   + G Y ++SNI A  G W+ V+ +R  MK  + QK  G S V+V+N  H F 
Sbjct: 745 ELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLFV 804

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGH 592
             D+ HP SE+IY  + +L  +LK  G+
Sbjct: 805 AADKNHPDSEEIYMSLKSLIIELKQEGN 832



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 144/499 (28%), Positives = 250/499 (50%), Gaps = 29/499 (5%)

Query: 43  LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRV 102
           L L RD Y+   LI   A    +  A +VF+ + + D  L+N ++   V+    A A  +
Sbjct: 176 LGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGL 235

Query: 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
           F  M+  G   +  T    L  C  +        +H L  K G   ++ V N+L+  Y+K
Sbjct: 236 FRVMRASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAK 295

Query: 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWN 218
           C    +  A +LF  M   D+V+WN MI+G V+ G + +A RLF +M     + D+V+  
Sbjct: 296 CQC--LEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLA 353

Query: 219 TI------LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272
           ++      L+G+ +  E++    +     H ++   S +V  Y K  D+ MA+ +FD   
Sbjct: 354 SLLPALTELNGFKQGKEIH--GYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATK 411

Query: 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMK 332
           +  +V  + +ISGY    M++ A +++  +   G+KP+   + S L ACA    + +G +
Sbjct: 412 SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQE 471

Query: 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ 392
           +H  + K  ++    V +AL+DMY+KCG LD +  +F+ M+ KD V+WN+M+   A +G+
Sbjct: 472 LHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGE 531

Query: 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL------P 446
            E+AL LF +M  EG   +  T   +L AC        G+   Y  +  +GI+       
Sbjct: 532 PEEALDLFRQMIMEGVKYNNVTISSILSACA-------GLPAIYYGKEIHGIIIKGPIRA 584

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            +     +ID+ G+ G L+ ALR+ + MP E N + W +++ A   H  V+ + ++L C 
Sbjct: 585 DLFAESALIDMYGKCGNLELALRVFEHMP-EKNEVSWNSIISAYGAHGLVKESVDLL-CC 642

Query: 507 IRLKGSDPGNYTMLSNIFA 525
           ++ +G    + T L+ I A
Sbjct: 643 MQEEGFKADHVTFLALISA 661



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 190/390 (48%), Gaps = 12/390 (3%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L   L  L +     Q K++   I++     D ++   L+     CR + +A  VF+  +
Sbjct: 352 LASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATK 411

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             DV + +T+I   V N ++  A ++F  +   G+  +       L AC       + Q 
Sbjct: 412 SIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQE 471

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H  + K  Y G  +V ++L+D YSKCG   + L+  +F  M  +D V+WNSMI+   + 
Sbjct: 472 LHGYVLKNAYEGRCYVESALMDMYSKCG--RLDLSHYMFSKMSAKDEVTWNSMISSFAQN 529

Query: 197 GELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI---PHR-NIVSW 248
           GE  EA  LF +M     + + V+ ++IL   A    +    E+   I   P R ++ + 
Sbjct: 530 GEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKGPIRADLFAE 589

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           S ++  Y K G++E+A  +F+ MP K  V W  IIS Y   G+ KE+  L   M+E G K
Sbjct: 590 SALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFK 649

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            D  T +++++ACA +G +  G+++   +  +Y  +      + +VD+Y++ G LD AM 
Sbjct: 650 ADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQ 709

Query: 368 VFNGMT-KKDLVSWNAMLYGLAMHGQGEKA 396
               M  K D   W A+L+   +H   E A
Sbjct: 710 FIADMPFKPDAGIWGALLHACRVHRNVELA 739



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 222/489 (45%), Gaps = 20/489 (4%)

Query: 54  KLISSLALCRQMGLAIKVFNDIQDPDVHL---YNTLIRACVQNSLNAQAFRVFLDM--QE 108
           +L+    L R+   A+ VF+ +          +N LIR       +  A   ++ M    
Sbjct: 81  RLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHP 140

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
                D  T P+++K+C      HL +++H      G   D++V ++LI  Y+  G++  
Sbjct: 141 SSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLL-- 198

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGY 224
             A+++F  M ERD V WN M+ G VK G+++ A  LF  M     + +  +    L   
Sbjct: 199 DGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVC 258

Query: 225 AKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           A   ++    +L            +   +T+V  Y+K   +E A  LF  MP   LV W 
Sbjct: 259 AAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWN 318

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
            +ISG  + G+  +A RL+  M+++GL+PD  TL S+L A  E      G ++H  I + 
Sbjct: 319 GMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRN 378

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
               +  + +ALVD+Y KC  +  A +VF+     D+V  + M+ G  ++   E A+ +F
Sbjct: 379 CAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMF 438

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLG 459
             +   G  P+       L AC     +  G + + Y ++  Y     VE    ++D+  
Sbjct: 439 RYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVE--SALMDMYS 496

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           + GRL  +  +   M  + + + W +++ +  ++   E A ++   +I ++G    N T+
Sbjct: 497 KCGRLDLSHYMFSKMSAK-DEVTWNSMISSFAQNGEPEEALDLFRQMI-MEGVKYNNVTI 554

Query: 520 LSNIFAATG 528
            S + A  G
Sbjct: 555 SSILSACAG 563



 Score = 43.9 bits (102), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 59/284 (20%), Positives = 113/284 (39%), Gaps = 21/284 (7%)

Query: 314 LISILAACAESGLLGLGMKVHASINKYRF-----KCNTNVCNALVDMYAKCGSLDNAMSV 368
           L+++L  C     L LG+++HA                 +   LV MY       +A++V
Sbjct: 39  LLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAV 98

Query: 369 FNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVGVLCACT 423
           F+ + +      + WN ++ G  M G    A+  + +M        PD +T   V+ +C 
Sbjct: 99  FSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCA 158

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
             G +  G +  +   R  G+   +     +I +   +G L  A  +   M  E + ++W
Sbjct: 159 ALGALHLG-RLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMD-ERDCVLW 216

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543
             ++    K   V  A  +   ++R  G DP   T+   +     + + ++ V+L    T
Sbjct: 217 NVMMDGYVKAGDVASAVGLFR-VMRASGCDPNFATLACFLSVCAAEADLLSGVQLH---T 272

Query: 544 RAQKPSGASSVEVDNE-VHEFSVCDQLHPKSEQIYQMINTLGKD 586
            A K      V V N  V  ++ C  L    E+ +++   + +D
Sbjct: 273 LAVKYGLEPEVAVANTLVSMYAKCQCL----EEAWRLFGLMPRD 312


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 197/546 (36%), Positives = 291/546 (53%), Gaps = 34/546 (6%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  NL  ++ +   ++K   Q D ++   ++     C Q+G A  +F+ +   DV  +N+
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNS 125

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           +I    Q     +   +F +M  +G+  D+ T   L  +        +++ IH+   K G
Sbjct: 126 MIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIG 185

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLF--MSMGERDIVSWNSMIAGLVKGGELSEAR 203
              D+ V N+ I +Y+KCG  G  LA+ +F  +  G +  VSWNSMIAG     + S+A 
Sbjct: 186 IDTDVSVSNTWIAAYAKCGEFG--LAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAV 243

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFE---------LFE-KIPH---------RN 244
             F +M           L G  +A    +            LF  K+ H          +
Sbjct: 244 GFFKKM-----------LXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSD 292

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           I   +T++  YSK GD+  A+ LFD M  KT V WT +I+G AEKG   EA  L+  ME 
Sbjct: 293 IQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEA 352

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
            G KPD  T+IS+++ C ++G L LG  +         K N  VCNAL+D+YAKCGS+DN
Sbjct: 353 VGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDN 412

Query: 365 AMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
           A  +F  M +K LVSW  ++ G A++G+ ++ALGLF +M + G  P+  TF+ VL AC H
Sbjct: 413 ARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNH 472

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
           AGF++KG + F  M + Y I P ++HY CM DLLGR GRLKEA   +Q+MP +P+  IW 
Sbjct: 473 AGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDVGIWS 532

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL AC+ H  V + E V   L  L+      Y  ++NI+A+ G W++VA +R  MK  +
Sbjct: 533 VLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMANIYASAGKWDRVAAIRTMMKCNK 592

Query: 545 AQKPSG 550
           A K SG
Sbjct: 593 AMKSSG 598



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 221/465 (47%), Gaps = 16/465 (3%)

Query: 68  AIKVFNDIQDP-DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
           A + FN   +   V  +N+ I   V      +A  +F  M++ G+  +N T+P + KAC+
Sbjct: 6   ATQSFNRFSNLWTVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACS 65

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
                   Q++H  + K  +  D+FV  S++D Y KC  +G   A  LF  M  RD+ SW
Sbjct: 66  KLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQLG--FAYNLFSRMPXRDVASW 123

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI- 245
           NSMI G  + G +     LF EM      + +  + G   +       ++ E I    I 
Sbjct: 124 NSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIK 183

Query: 246 ------VSWS-TMVWGYSKDGDMEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAA 296
                 VS S T +  Y+K G+  +A+ +FD +    KT V W  +I+GYA      +A 
Sbjct: 184 IGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAV 243

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
             + +M   G + D  T++S+L++C +  +L  G  +HA   +     +  V N L+ MY
Sbjct: 244 GFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMY 303

Query: 357 AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416
           +KCG + +A  +F+ M  K  VSW AM+ G A  G  ++A+ LFS M+  G  PD  T +
Sbjct: 304 SKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTII 363

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
            ++  C   G ++ G ++  +     G+   +     +ID+  + G +  A  L  +MP 
Sbjct: 364 SLMSGCGQTGALELG-KWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP- 421

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           E + + W TL+  C  +   + A  +   ++ L G  P + T L+
Sbjct: 422 EKSLVSWTTLIAGCALNGEFKEALGLFFQMVEL-GLKPNHITFLA 465


>gi|125528598|gb|EAY76712.1| hypothetical protein OsI_04667 [Oryza sativa Indica Group]
          Length = 548

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/491 (37%), Positives = 272/491 (55%), Gaps = 44/491 (8%)

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG------------- 167
           LLKA   +    L + +HA   K     D  V  +L+  Y KCG++              
Sbjct: 61  LLKATASRADPVLGRALHAEAVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRN 120

Query: 168 ----------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP- 210
                           +  A+ LF  MG R  V+W ++I G    G+++E RR F+ MP 
Sbjct: 121 AVTCNAMLAGYAAAGDMVSAEALFAGMGSRTPVTWATLIRGFAGKGDMAETRRWFEAMPL 180

Query: 211 -ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
             ++ V+W   +  Y  AG+M  A ELF K+P RN   WS+MV G  K G+ + A+ +FD
Sbjct: 181 GMQNVVTWTVAVQAYVAAGDMETARELFNKMPARNAFVWSSMVTGNFKAGNADEAQAVFD 240

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           ++P + LV W  +I+GYA+ G  ++A   +  M +  +KPD+ T+  +L+ACA+ G L  
Sbjct: 241 KIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQLGSLEQ 300

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
             KVH  I ++R + N  V N LVDM+AKCG L  A ++F+ M  ++   WN+M+  L+ 
Sbjct: 301 ARKVHNFIIQHRIRKNQFVMNGLVDMFAKCGDLAFARNIFDNMQWRNTECWNSMISALSS 360

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HGQ  +A+ LFS+M+     P++ T + VL ACTH GF+D+G++ F   +  YG+   VE
Sbjct: 361 HGQSIEAIRLFSKMECSEQKPNEITLLAVLGACTHGGFVDEGLRIFSKFD-IYGVAAAVE 419

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE----EVLDC 505
           HYGC++DLLGR+GRL+EA  +V++M VEPN +IWG+LLGACR H   E++E    E+   
Sbjct: 420 HYGCLVDLLGRAGRLREAYEIVKNMLVEPNEVIWGSLLGACRVHGDAEMSELVSSEIHQL 479

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
             R   ++   Y +LSNI A++  W +   +R +M      K  G SSVE+  E+ E  V
Sbjct: 480 HSRRVSTNDAEYILLSNIMASSERWEQAERMRRKMALHGVGKTPGCSSVEL--EITEHQV 537

Query: 566 C------DQLH 570
           C       QLH
Sbjct: 538 CAGSGTLSQLH 548



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 2/142 (1%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  VF+ I   ++  +N LI    +     +A   F  M +  +  D FT   +L AC  
Sbjct: 235 AQAVFDKIPVRNLVNWNALIAGYAKMGCCEKALEAFHSMLKDKIKPDEFTMAGVLSACAQ 294

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  + +H  I +     + FV N L+D ++KCG   ++ A+ +F +M  R+   WN
Sbjct: 295 LGSLEQARKVHNFIIQHRIRKNQFVMNGLVDMFAKCG--DLAFARNIFDNMQWRNTECWN 352

Query: 188 SMIAGLVKGGELSEARRLFDEM 209
           SMI+ L   G+  EA RLF +M
Sbjct: 353 SMISALSSHGQSIEAIRLFSKM 374



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 59/228 (25%), Positives = 95/228 (41%), Gaps = 13/228 (5%)

Query: 279 WTIIISGYAEKGMAKEAARLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           W  +   YA     +EAA +Y ++        P    +I +L A A      LG  +HA 
Sbjct: 24  WANLAKVYASNSFLREAAIIYSKLLPHRTHHLP---LVIVLLKATASRADPVLGRALHAE 80

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
             K     +  V   LV +Y KCG L +A  VF+GM  ++ V+ NAML G A  G    A
Sbjct: 81  AVKSANAHDRLVGTTLVSVYCKCGLLADARRVFDGMLDRNAVTCNAMLAGYAAAGDMVSA 140

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
             LF+ M          T+  ++      G + +  ++F +M      +  V  +   + 
Sbjct: 141 EALFAGMGSR----TPVTWATLIRGFAGKGDMAETRRWFEAMPLG---MQNVVTWTVAVQ 193

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
               +G ++ A  L   MP   NA +W +++    K    + A+ V D
Sbjct: 194 AYVAAGDMETARELFNKMPAR-NAFVWSSMVTGNFKAGNADEAQAVFD 240


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 200/603 (33%), Positives = 314/603 (52%), Gaps = 52/603 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           +N+ K+LF ++   +L         +++     R+M L ++ FN++ + DV  +N ++  
Sbjct: 118 VNEAKRLFDEMPVKNL----ISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDG 173

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK--ACNGKNWFHLVQMIHALIYKCGYF 147
            +Q      A++ F + Q+  V +    +  +L   A NG N     ++   +  +    
Sbjct: 174 FIQVGDLDSAWKFFQETQKPNVVS----WVTMLSGFARNG-NILESRRLFDQMPSR---- 224

Query: 148 GDIFVPNSLIDSY-SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
            +I   N++I +Y  +C +     A +LF  M ERD VSW +MI G V+ G+L EAR L 
Sbjct: 225 -NIVSWNAMISAYVQRCEI---DEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELL 280

Query: 207 DEMPER-------------------------------DAVSWNTILDGYAKAGEMNLAFE 235
           +EMP R                               D V WN ++ GYA  G +N A  
Sbjct: 281 NEMPYRNIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALC 340

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
           L +++ ++++V+W+TM+  Y++ G M+ A  +F+ M  + LV W  +I+G+   G   +A
Sbjct: 341 LSKRMVNKDMVTWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDA 400

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
            + +  M   G KPD  +    L++CA    L +G ++H  + K  +     V NAL+ M
Sbjct: 401 LKSFALMGHEGKKPDQLSFACGLSSCATIAALQVGNQLHQVVVKGGYLNYLVVNNALITM 460

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKCG +  A  VFNG+   D++SWN+++ G A++G G++AL LF  M  EG  PD+ TF
Sbjct: 461 YAKCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTF 520

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           +G+L AC HAG +D G++ F  M + Y I P  EHY CM+DLLGR GRL EA  +V+ M 
Sbjct: 521 IGILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMK 580

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           V+  A +WG LLGACR H  +EL       L   +     NY +LSNI A    WN+V  
Sbjct: 581 VKATAGVWGALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQE 640

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VR+ M  +   K  G S VEV N+VH F   D    + + I   + +L   ++   H ++
Sbjct: 641 VRMLMNASSTVKEPGCSWVEVRNQVHGFLSDDSTRSRPD-IGVTLASLNSHIRNAFHISE 699

Query: 596 LSA 598
           +SA
Sbjct: 700 VSA 702



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 212/399 (53%), Gaps = 24/399 (6%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +++      +IS  A   ++  A  +F+ +   ++  +NT++   + N    +A+++F+ 
Sbjct: 3   EKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVI 62

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI--YKCGYFGDIFVPNSLIDSYSKC 163
           M  + +F+  +T        NG+     V+    L     C Y   +   N++I  Y K 
Sbjct: 63  MPRRDLFS--WTLMITCYTRNGE-----VEKARELFDSLPCSYRKGVACWNAMISGYVKK 115

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
           G   V+ AK+LF  M  ++++SWNSM+AG  +  ++      F+EM ERD VSWN ++DG
Sbjct: 116 G--RVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDG 173

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           + + G+++ A++ F++    N+VSW TM+ G++++G++  ++ LFD+MP++ +V W  +I
Sbjct: 174 FIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMI 233

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           S Y ++    EA+RL+++M E     D  +  +++      G L    ++   +N+  ++
Sbjct: 234 SAYVQRCEIDEASRLFEEMPE----RDSVSWTTMINGYVRIGKLDEAREL---LNEMPYR 286

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            N     A++  Y +C  +D A   F+ +   D+V WNAM+ G A HG+  +AL L  RM
Sbjct: 287 -NIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRM 345

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERD 441
            ++    D  T+  ++      G +D+ V+ F  M ERD
Sbjct: 346 VNK----DMVTWNTMISCYAQVGQMDRAVKIFEEMGERD 380



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 162/302 (53%), Gaps = 22/302 (7%)

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M E++ V++NSMI+   K G ++ AR LFD+MP R+ VSWNT++ GY   G+ + A++LF
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLF 60

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKE 294
             +P R++ SW+ M+  Y+++G++E A+ LFD +P    K +  W  +ISGY +KG   E
Sbjct: 61  VIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKGRVNE 120

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A RL+D+M    L   +    S+LA   ++  + LG++    +++     +    N +VD
Sbjct: 121 AKRLFDEMPVKNLISWN----SMLAGYTQNRKMRLGLEFFNEMDER----DVVSWNLMVD 172

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            + + G LD+A   F    K ++VSW  ML G A +G   ++  LF +M          +
Sbjct: 173 GFIQVGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI----VS 228

Query: 415 FVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           +  ++ A      ID+  + F  M ERD         +  MI+   R G+L EA  L+  
Sbjct: 229 WNAMISAYVQRCEIDEASRLFEEMPERD------SVSWTTMINGYVRIGKLDEARELLNE 282

Query: 474 MP 475
           MP
Sbjct: 283 MP 284



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 93/185 (50%), Gaps = 10/185 (5%)

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           NT   N+++ +YAK G ++ A ++F+ M +++LVSWN M+ G   +G+ ++A  LF  M 
Sbjct: 5   NTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVIMP 64

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
                 D +++  ++   T  G ++K  + F S+   Y     V  +  MI    + GR+
Sbjct: 65  RR----DLFSWTLMITCYTRNGEVEKARELFDSLPCSY--RKGVACWNAMISGYVKKGRV 118

Query: 465 KEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524
            EA RL   MPV+ N I W ++L    ++  + L  E  +    +   D  ++ ++ + F
Sbjct: 119 NEAKRLFDEMPVK-NLISWNSMLAGYTQNRKMRLGLEFFN---EMDERDVVSWNLMVDGF 174

Query: 525 AATGD 529
              GD
Sbjct: 175 IQVGD 179


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 207/665 (31%), Positives = 331/665 (49%), Gaps = 119/665 (17%)

Query: 37  FAQIIKLDLQRDPYIAPKLISSLALCRQM------GL---AIKVFNDIQDPDVHLYNTLI 87
           F++ ++L L RD Y   K ++  AL R +      GL   A+++F+++   D  ++N +I
Sbjct: 40  FSKPVRLVL-RDRYKVTKQLNDPALTRALRGFADSGLMEDALQLFDEMNKADTFVWNVMI 98

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           +      L  +A +++  M   GV  D+FTYPF++K+  G +     + IHA++ K  + 
Sbjct: 99  KGFTSCGLYFEALQLYCRMVFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFV 158

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D++V NSLI  Y K G      A+K+F  M ERDIVSWNSMI+G +   +   +  LF 
Sbjct: 159 SDVYVCNSLISLYMKLGCSWD--AEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFK 216

Query: 208 EM------PER----------------------------------DAVSWNTILDGYAKA 227
           EM      P+R                                  D +   +ILD Y+K 
Sbjct: 217 EMLKFGFKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKY 276

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-----------TL 276
           GE++ A  +F+ I  RNIV+W+ ++  Y+++  +  A L F +M  +            L
Sbjct: 277 GEVSYAERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINL 336

Query: 277 VPWTIIISG-------------------------YAEKGMAKEAARLYDQMEE------- 304
           +P   I+ G                         Y E G  K A  ++D++ E       
Sbjct: 337 LPACAILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWN 396

Query: 305 ------------------------AGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340
                                   + L PD  T+ SIL A AES  L  G ++HA I K 
Sbjct: 397 SIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKS 456

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF 400
           R+  NT + N+LV MYA CG L++A   FN +  KD+VSWN+++   A+HG G  ++ LF
Sbjct: 457 RYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCLF 516

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
           S M      P+K TF  +L AC+ +G +D+G +YF SM+R+YGI P +EHYG M+DL+GR
Sbjct: 517 SEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGR 576

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +G    A R ++ MP  P A IWG+LL A R HN + +AE   + + +++  + G Y +L
Sbjct: 577 TGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLL 636

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
            N++A    W  V  ++L M+     + S  S+VE  ++ H  +  D+ H ++ +IY+++
Sbjct: 637 LNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEVL 696

Query: 581 NTLGK 585
           + + +
Sbjct: 697 DIVSR 701


>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 670

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 204/595 (34%), Positives = 312/595 (52%), Gaps = 30/595 (5%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  + +C +L   KQ+ AQ+++  L  +  +  K  +            K   DI+ P  
Sbjct: 88  LDFIQRCNDLRSFKQIHAQLLRSTLVDNDLVVTKAANFFG---------KHVTDIRYPCN 138

Query: 81  HLY-----------NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
            L            N +I      +    A R++  +   G   D +T P +LK+C   +
Sbjct: 139 FLKQFDWSFSSFPCNLIISGYGAGNFPWAAIRIYRWVVGNGFVPDVYTVPAVLKSCARFS 198

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG-VVGVSLAKKLFMSMGERDIVSWNS 188
               V+ IH L  K   + D+FV NS +  YS CG  VG   A K+F  M  RD+VSW  
Sbjct: 199 GIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVG---ASKVFDFMPVRDVVSWTG 255

Query: 189 MIAGLVKGGELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLA---FELFEKIPH-R 243
           +I+G +K G  ++A  LF  M    +A ++ +IL    K G +NL      L  K PH +
Sbjct: 256 LISGYMKAGLFNDAVALFLRMDVAPNAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGK 315

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
            +V  +T++  Y K   +  AK LFD +P K +V WT +ISG  +    +E+  L+ +M 
Sbjct: 316 ELVVSNTLMDMYVKCESVTDAKRLFDEIPEKDIVSWTSMISGLVQYQCPQESLDLFYEML 375

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
            +G +PD   L S+L+ACA  GLL  G  VH  I+  R K + ++  +L+DMYAKCG ++
Sbjct: 376 GSGFEPDGVILTSVLSACASLGLLDYGRWVHEYIDHSRIKWDVHIGTSLIDMYAKCGCIE 435

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
            A  +FN +  K++ +WNA + GLA++G G++AL  F  + + G  P++ TF+ V  AC 
Sbjct: 436 MAQQMFNLLPSKNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACC 495

Query: 424 HAGFIDKGVQYFYSMER-DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           H+G +D+G  YF  M    Y + P +EHYGCM+DLL R+  ++EA+ L+  MP+ P+  I
Sbjct: 496 HSGLVDEGRSYFKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMPMPPDVQI 555

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
            G LL A   +  VEL  E+L  +   +  + G Y +LSN +A    W +V +VR  MK+
Sbjct: 556 IGALLSASSTYGNVELTPEMLKTVRNFECQESGVYVLLSNWYANNKKWAEVRSVRRLMKE 615

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
               K  G+S + VD + H+F V D  HP+SE I+ ++N L       GH   LS
Sbjct: 616 KGISKAPGSSLIRVDGKSHKFVVGDNNHPQSEDIHVLLNILANQTYLEGHIDTLS 670


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 202/589 (34%), Positives = 326/589 (55%), Gaps = 21/589 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC+ L+  +++F      ++    +    LIS+ A    + +A ++F+++  PD   YNT
Sbjct: 55  KCRRLSAARRVFDHTHDCNV----FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNT 110

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI A  +      AF++FL+M+E  +  D FT   ++ AC G N   L++ +HAL    G
Sbjct: 111 LIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITAC-GIN-VGLIRQLHALSVVTG 168

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARR 204
               + V N+LI SYSK G +    A+++F  + E RD VSWNSM+   ++  E S+A  
Sbjct: 169 LDSYVSVGNALITSYSKNGFL--KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALE 226

Query: 205 LFDEMPER----DAVSWNTILDGYAKA----GEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           L+ EM  R    D  +  ++L  +       G +    +L +   H+N    S ++  YS
Sbjct: 227 LYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYS 286

Query: 257 KDGD-MEMAKLLFDRMPAKTLVPWTIIISGYA-EKGMAKEAARLYDQMEEAGLKPDDGTL 314
           K G  M   + +FD +    LV W  +ISGY+  + ++ EA   + Q++  G +PDD +L
Sbjct: 287 KCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSL 346

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           + +++AC+       G +VH    K     N  +V NAL+ MY+KCG+L +A ++F+ M 
Sbjct: 347 VCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           + + VS+N+M+ G A HG G ++L LF RM + GF P   TF+ VL AC H G ++ G  
Sbjct: 407 EHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKI 466

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF  M++ +GI P+  H+ CMIDLLGR+G+L EA RL++++P +P    W  LLGACR H
Sbjct: 467 YFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIH 526

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             VELA +  + L++L   +   Y ML+NI++  G     A+VR  M+    +K  G S 
Sbjct: 527 GNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSW 586

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL-SAEIG 601
           +EV+  +H F   D  HP  ++I + +  + + +K VG+  ++ SA +G
Sbjct: 587 IEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVG 635



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 158/314 (50%), Gaps = 10/314 (3%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N  L  Y+K   ++ A  +F+     N+ S++T++  Y+K+  +E+A  LFD MP    V
Sbjct: 47  NHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSV 106

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +  +I+ YA +G  + A +L+ +M EA L  D  TL  I+ AC  +  +GL  ++HA  
Sbjct: 107 SYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGIN--VGLIRQLHALS 164

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKA 396
                    +V NAL+  Y+K G L  A  +F+ +++ +D VSWN+M+     H +G KA
Sbjct: 165 VVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKA 224

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MI 455
           L L+  M   G   D +T   VL A T+   +  G+Q+   + +      Q  H G  +I
Sbjct: 225 LELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG--YHQNSHVGSGLI 282

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSD 513
           DL  + G      R V      P+ ++W T++     +   +L++E L+C  +L+  G  
Sbjct: 283 DLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYE--DLSDEALECFRQLQVVGHR 340

Query: 514 PGNYTMLSNIFAAT 527
           P + +++  I A +
Sbjct: 341 PDDCSLVCVISACS 354


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 280/508 (55%), Gaps = 51/508 (10%)

Query: 119 PFLLKACNGKNWFHLVQM---------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           P  LK+ + K    L+Q          IHA + + G+  D F+   L+ S SKC    + 
Sbjct: 41  PKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCH--AID 98

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN----------- 218
            A ++F      ++  + ++I G V  G   +A +L+  M     +  N           
Sbjct: 99  YASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACG 158

Query: 219 ----------------------------TILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                                        I++ Y K GE+  A  +FE++P  ++V+ + 
Sbjct: 159 SQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTV 217

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M+  YS  G +E A  +F R+  K  V WT +I G+        A   +  M+   ++P+
Sbjct: 218 MISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPN 277

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           + T++ +L+AC++ G L +G  VH+ + K+  + N  V NAL++MY++CGS+D A +VF+
Sbjct: 278 EFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFD 337

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            M  +D++++N M+ GL+M+G+  +A+ LF  M      P   TFVGVL AC+H G +D 
Sbjct: 338 EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDF 397

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G + F+SM RDYG+ PQ+EHYGCM+DLLGR GRL+EA  L+++M + P+ I+ GTLL AC
Sbjct: 398 GFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 457

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
           + H  +EL E+V   L     +D G Y +LS+++A++G W + A VR +MK+   QK  G
Sbjct: 458 KMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPG 517

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
            SS+EV+NE+HEF + D  HP+ E+IY+
Sbjct: 518 CSSIEVNNEIHEFLLGDLRHPRKERIYE 545



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/434 (24%), Positives = 193/434 (44%), Gaps = 45/434 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L + K++NQ   + AQ+I+    +DP++  +L+ S + C  +  A ++F    +P+V+LY
Sbjct: 56  LQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLY 115

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
             LI   V +     A +++  M    +  DN+    +LKAC  +      + +H+   K
Sbjct: 116 TALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALK 175

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   +  V   +++ Y KCG +G   A+++F  M E D+V+   MI+     G + EA 
Sbjct: 176 LGLSSNRLVRLRIMELYGKCGELGD--ARRVFEEMPE-DVVASTVMISSYSDQGLVEEAG 232

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN------------------- 244
            +F  +  +D V W  ++DG+ +  EMN A E F  +   N                   
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 292

Query: 245 ---IVSW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
              I  W                 + ++  YS+ G ++ A+ +FD M  + ++ +  +IS
Sbjct: 293 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 352

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV-HASINKYRFK 343
           G +  G +++A  L+  M    L+P + T + +L AC+  GL+  G K+ H+    Y  +
Sbjct: 353 GLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVE 412

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                   +VD+  + G L+ A  +   M    D +    +L    MH   E    +   
Sbjct: 413 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKV 472

Query: 403 MKDEGFGPDKYTFV 416
           ++D G   D  T+V
Sbjct: 473 LEDRG-QADSGTYV 485


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 182/578 (31%), Positives = 309/578 (53%), Gaps = 59/578 (10%)

Query: 23  NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALC----RQMGLAIKVFNDIQDP 78
            ++ C+ +    Q+ A  IK    RD   A +++   A      R +  A K+FN +   
Sbjct: 29  QINNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQR 88

Query: 79  DVHLYNTLIRACVQNSLNAQ--AFRVFLDM-QEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
           +   +NT+IR   ++  +    A  +F +M  ++ V  + FT+P +LKAC         +
Sbjct: 89  NCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGK 148

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IH L  K G+ GD FV ++L+  Y  CG                               
Sbjct: 149 QIHGLALKYGFGGDEFVMSNLVRMYVMCGF------------------------------ 178

Query: 196 GGELSEARRLF-DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
              + +AR LF   + E+D V    + D   + GE               IV W+ M+ G
Sbjct: 179 ---MKDARVLFYKNIIEKDMV---VMTDRRKRDGE---------------IVLWNVMIDG 217

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y + GD + A++LFD+M  +++V W  +ISGY+  G  K+A  ++ +M++  ++P+  TL
Sbjct: 218 YMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTL 277

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
           +S+L A +  G L LG  +H        + +  + +AL+DMY+KCG ++ A+ VF  + +
Sbjct: 278 VSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPR 337

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           +++++W+AM+ G A+HGQ   A+  F +M+  G  P    ++ +L AC+H G +++G +Y
Sbjct: 338 ENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRY 397

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M    G+ P++EHYGCM+DLLGRSG L EA   + +MP++P+ +IW  LLGACR   
Sbjct: 398 FSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQG 457

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            VE+ + V + L+ +   D G Y  LSN++A+ G+W++V+ +RL+MK+   +K  G S +
Sbjct: 458 NVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLI 517

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           ++D  +HEF V D  HPK+++I  M+  +   L+  G+
Sbjct: 518 DIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGY 555


>gi|357473845|ref|XP_003607207.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508262|gb|AES89404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 542

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 195/560 (34%), Positives = 295/560 (52%), Gaps = 64/560 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFND----IQD 77
           L+K  ++++ KQL A I K  L     +  KLI  S+L+    +  A  +F      I +
Sbjct: 13  LNKLSSISELKQLQAIITKSGLHSHIPLTTKLIFFSALSPFGNLSHAYSLFQHSSILIHN 72

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM- 136
           P +   NT+IRA   +    QA  ++  M    V +D++T  F+LKAC+    + L+Q  
Sbjct: 73  PFIS--NTMIRAFSHSCFPLQALLIYNQMLINNVVSDSYTCNFVLKACSRA--YKLIQES 128

Query: 137 -----------------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179
                            IH  + K G+  D  V NSL+  YS+CG+V V           
Sbjct: 129 GSCDDDNLVVVYNKGTEIHCRVIKIGFQNDPSVQNSLLYFYSQCGLVSV----------- 177

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239
                                 AR LFD++ +   VSWN ++  Y    +   A  L E 
Sbjct: 178 ----------------------ARHLFDQIKDTSLVSWNIMISAYDLVNDYESADYLLEL 215

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +P + +VSW+T++  Y + GD++ A+ +F  MP +  V W  +I+G         A  L+
Sbjct: 216 MPCKTVVSWNTLIARYIRLGDVQAARRVFGCMPERNAVSWNSMIAGCVSVRDYAGALELF 275

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M+ AG+KP + TLISIL ACAE+G L +G K++ S+     K  + + NALV+MY KC
Sbjct: 276 SEMQNAGVKPTEVTLISILGACAETGALEIGHKIYESLKVCEHKIESYLGNALVNMYCKC 335

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG---PDKYTFV 416
           G+L  A  +FNGM  K +  WNAM+ GLA+HG  E+   LF+ M++   G   PD+ TF+
Sbjct: 336 GNLSLAWEIFNGMKMKTVSCWNAMVIGLAVHGYCEEVFQLFTEMEESLGGSIRPDRVTFI 395

Query: 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           GVL AC+H G +DK   YF  M + Y I+P  +HYGCM+DLL R G L+EA +++ + P 
Sbjct: 396 GVLVACSHKGLVDKARWYFDHMVKRYKIVPDSKHYGCMVDLLSRWGLLEEAYQIIMTAPF 455

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536
           + + ++W TLLGACR  +  ELAE     L +LK    G+Y +LSNI+A  G W++V  +
Sbjct: 456 QNSVVLWRTLLGACRTQSNTELAEISFKQLAKLKQLIDGDYVLLSNIYAEAGRWDEVERL 515

Query: 537 RLQMKKTRAQKPSGASSVEV 556
           R +M      + +G S + +
Sbjct: 516 RSEMDYLHVPRQAGYSQINM 535


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/580 (33%), Positives = 302/580 (52%), Gaps = 75/580 (12%)

Query: 23  NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ---MGLAIKVFNDIQDPD 79
           +  KC++++Q +Q  +QII+L L    ++ P LI+  A       +  A+K+F+ I  PD
Sbjct: 28  HFEKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPD 87

Query: 80  VHLYNTLIRACVQNSL--NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
             LYNT+I+  + + L        ++  M +  V  +NFT+P LL AC  +   H +Q I
Sbjct: 88  AFLYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC--RKIQHGMQ-I 144

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           HA ++K G+            ++S C                       NS+I   V   
Sbjct: 145 HAHLFKFGF-----------GAHSVC----------------------LNSLIHMYVTFQ 171

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
            L EARR+F                                 IPH + VSW++++ GYSK
Sbjct: 172 ALEEARRVF-------------------------------HTIPHPDSVSWTSLISGYSK 200

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLIS 316
            G ++ A  +F  MP K    W  +++ Y +     EA  L+D+M+ E     D     +
Sbjct: 201 WGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATT 260

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-- 374
           +L+AC   G L  G  +H  I +   + ++ +  A+VDMY KCG L+ A+ VF+ +    
Sbjct: 261 MLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPC 320

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           + + SWN M+ GLAMHG GE A+ LF  M+ +   PD  TF+ +L AC H+G +++G  Y
Sbjct: 321 RWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNY 380

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F  M R YGI P++EH+GCM+DLLGR+G + EA +L+  MPV P+  + GTLLGAC+KH 
Sbjct: 381 FSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHR 440

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +EL EE+   +I L+ ++ G Y +L+N++A  G W   A VR  M     +K  G S +
Sbjct: 441 NIELGEEIGRRVIELEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMI 500

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           E+   VHEF   ++ HP++++++  +  + + LK VG+ A
Sbjct: 501 ELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKSVGYVA 540


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 194/606 (32%), Positives = 311/606 (51%), Gaps = 66/606 (10%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QE 108
           ++   L++  + CR +  A KVF+++   DV  +N++I +  +      A  +F  M  E
Sbjct: 163 FVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNE 222

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
            G   DN T   +L  C       L + +H          ++FV N L+D Y+KCG++  
Sbjct: 223 FGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMM-- 280

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
             A  +F +M  +D+VSWN+M+AG  + G   +A RLF++M E     D V+W+  + GY
Sbjct: 281 DEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGY 340

Query: 225 AKAG----EMNLAFELFEKIPHRNIVSWSTMVWG-------------------------- 254
           A+ G     + +  ++       N V+  +++ G                          
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRK 400

Query: 255 ----------------YSKDGDMEMAKLLFDRMPAKT--LVPWTIIISGYAEKGMAKEAA 296
                           Y+K   ++ A+ +FD +  K   +V WT++I GY++ G A +A 
Sbjct: 401 NGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 297 RLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN-----VC 349
            L  +M  E+   +P+  T+   L ACA    L +G ++HA    Y  +   N     V 
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHA----YALRNQQNAVPLFVS 516

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N L+DMYAKCGS+ +A  VF+ M  K+ V+W +++ G  MHG GE+ALG+F  M+  GF 
Sbjct: 517 NCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFK 576

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
            D  T + VL AC+H+G ID+G++YF  M+  +G+ P  EHY C++DLLGR+GRL  ALR
Sbjct: 577 LDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALR 636

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           L++ MP+EP  ++W   L  CR H  VEL E   + +  L  +  G+YT+LSN++A  G 
Sbjct: 637 LIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGR 696

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           W  V  +R  M+    +K  G S VE       F V D+ HP +++IYQ++    + +K 
Sbjct: 697 WKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKD 756

Query: 590 VGHAAK 595
           +G+  +
Sbjct: 757 IGYVPE 762



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 166/563 (29%), Positives = 266/563 (47%), Gaps = 66/563 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIK---LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +HKCK ++Q K +  +++    L L    ++    IS   L   + L ++ F    D  V
Sbjct: 35  IHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISVGCLSHAVSL-LRRFPP-SDAGV 92

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           + +N+LIR+   N    +   +F  M       DN+T+PF+ KAC   +     +  HAL
Sbjct: 93  YHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHAL 152

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
               G+  ++FV N+L+  YS+C    +S A+K+F  M   D+VSWNS+I    K G+  
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCR--SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPK 210

Query: 201 EARRLFDEMPE----------------------------------------RDAVSWNTI 220
            A  +F  M                                          ++    N +
Sbjct: 211 VALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCL 270

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL---- 276
           +D YAK G M+ A  +F  +  +++VSW+ MV GYS+ G  E A  LF++M  + +    
Sbjct: 271 VDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDV 330

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W+  ISGYA++G+  EA  +  QM  +G+KP++ TLIS+L+ CA  G L  G ++H  
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 337 INKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNGMTKK--DLVSWNAMLYGL 387
             KY      N       V N L+DMYAKC  +D A ++F+ ++ K  D+V+W  M+ G 
Sbjct: 391 AIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 388 AMHGQGEKALGLFSRMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
           + HG   KAL L S M +E     P+ +T    L AC     +  G Q + Y++      
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNA 510

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +P      C+ID+  + G + +A RLV    +  N + W +L+     H   E A  + D
Sbjct: 511 VPLFVS-NCLIDMYAKCGSISDA-RLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFD 568

Query: 505 CLIRLKGSDPGNYTMLSNIFAAT 527
            + R+ G      T+L  ++A +
Sbjct: 569 EMRRI-GFKLDGVTLLVVLYACS 590


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 173/540 (32%), Positives = 292/540 (54%), Gaps = 45/540 (8%)

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           QAF  F       ++++   +  LL++C  +N   L + +H+LI   G   D F+ N L+
Sbjct: 39  QAFDRF----SSHIWSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLL 94

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSW 217
           + YSKCG +  ++   LF  M  ++I+S N +I G  + G+   AR++FDEMPER+  +W
Sbjct: 95  NLYSKCGQLDTAIT--LFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATW 152

Query: 218 NTILDGYAKAGEMNLAFELFEK------IPHR---------------------------- 243
           N ++ G  +         LF +      +P                              
Sbjct: 153 NAMVAGLIQFEFNEEGLGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRK 212

Query: 244 -----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
                N+V  S++   Y K G +   + L   MP++ +V W  +I+G A+ G  +E    
Sbjct: 213 CGFEFNLVVVSSLAHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQ 272

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           Y+ M+ AG +PD  T +S++++C+E   LG G ++HA + K       +V ++L+ MY++
Sbjct: 273 YNMMKMAGFRPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSR 332

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           CG L+ ++ VF      D+V W++M+     HG+G +A+ LF++M+ E    +  TF+ +
Sbjct: 333 CGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSL 392

Query: 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
           L AC+H G  +KG+++F  M   YG+ P++EHY CM+DLLGR G ++EA  L++SMPV+ 
Sbjct: 393 LYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKA 452

Query: 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538
           + I W TLL AC+ H   E+A  + + + RL   DP  Y +LSNI A+   W+ V++VR 
Sbjct: 453 DVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRK 512

Query: 539 QMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            M+  + +K  G S +EV N++H+F + D+ HPKS +I   +  L  ++K  G+   + +
Sbjct: 513 AMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDS 572



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 202/442 (45%), Gaps = 47/442 (10%)

Query: 11  FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI- 69
           +S+  L    LQ+     +L+  KQL + II      D +I+  L++  + C Q+  AI 
Sbjct: 49  WSEPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAIT 108

Query: 70  ------------------------------KVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
                                         K+F+++ + +V  +N ++   +Q   N + 
Sbjct: 109 LFGVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEG 168

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
             +F  M E G   D F    +L+ C G       + +H  + KCG+  ++ V +SL   
Sbjct: 169 LGLFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHM 228

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAV 215
           Y KCG +G    ++L  +M  +++V+WN++IAG  + G   E    ++ M       D +
Sbjct: 229 YMKCGSLGE--GERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKI 286

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRN---IVS-WSTMVWGYSKDGDMEMAKLLFDRM 271
           ++ +++   ++   +    ++  ++       IVS  S+++  YS+ G +E +  +F   
Sbjct: 287 TFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLEC 346

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
               +V W+ +I+ Y   G   EA  L++QME+  L+ +D T +S+L AC+  GL   G+
Sbjct: 347 ENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGI 406

Query: 332 KVH-ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAM 389
           K     + KY  K        +VD+  + GS++ A ++   M  K D+++W  +L    +
Sbjct: 407 KFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKI 466

Query: 390 HGQGEKALGLFSRMKDEGFGPD 411
           H + E A     R+ +E F  D
Sbjct: 467 HKKTEMA----RRISEEVFRLD 484


>gi|334185512|ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g21470
 gi|11994382|dbj|BAB02341.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642992|gb|AEE76513.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 192/516 (37%), Positives = 295/516 (57%), Gaps = 46/516 (8%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK-NWFHLVQMI 137
           + H+ N LI+  +      QA  ++  ++ +GV+   +  P +L+AC        L +++
Sbjct: 11  EFHVSN-LIKNHISRGSPIQALVLYGGIRRRGVYFPGWV-PLILRACACVVPRVVLGKLL 68

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H+   K G   D+ V +SLI  Y KCG V VS A+K+F  M ER++ +WN+MI G +  G
Sbjct: 69  HSESIKFGVCSDVMVGSSLISMYGKCGCV-VS-ARKVFDEMPERNVATWNAMIGGYMSNG 126

Query: 198 ELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEMNLAFELFEK----------------- 239
           +   A  LF+E+   R+ V+W  ++ GY K  E+  A ELFE+                 
Sbjct: 127 DAVLASGLFEEISVCRNTVTWIEMIKGYGKRIEIEKARELFERMPFELKNVKAWSVMLGV 186

Query: 240 ----------------IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                           IP +N   WS M+ GY + GD+  A+ +F R+ A+ LV W  +I
Sbjct: 187 YVNNRKMEDARKFFEDIPEKNAFVWSLMMSGYFRIGDVHEARAIFYRVFARDLVIWNTLI 246

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           +GYA+ G + +A   +  M+  G +PD  T+ SIL+ACA+SG L +G +VH+ IN    +
Sbjct: 247 AGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQSGRLDVGREVHSLINHRGIE 306

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            N  V NAL+DMYAKCG L+NA SVF  ++ + +   N+M+  LA+HG+G++AL +FS M
Sbjct: 307 LNQFVSNALIDMYAKCGDLENATSVFESISVRSVACCNSMISCLAIHGKGKEALEMFSTM 366

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           +     PD+ TF+ VL AC H GF+ +G++ F  M +   + P V+H+GC+I LLGRSG+
Sbjct: 367 ESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEM-KTQDVKPNVKHFGCLIHLLGRSGK 425

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT----- 518
           LKEA RLV+ M V+PN  + G LLGAC+ H   E+AE+V+  +I   GS   +Y+     
Sbjct: 426 LKEAYRLVKEMHVKPNDTVLGALLGACKVHMDTEMAEQVMK-IIETAGSITNSYSENHLA 484

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +SN++A T  W     +R++M+K   +K  G SS+
Sbjct: 485 SISNLYAHTERWQTAEALRVEMEKRGLEKSPGLSSL 520



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 36/258 (13%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F  +   D+ ++NTLI    QN  +  A   F +MQ +G   D  T   +L AC  
Sbjct: 227 ARAIFYRVFARDLVIWNTLIAGYAQNGYSDDAIDAFFNMQGEGYEPDAVTVSSILSACAQ 286

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                + + +H+LI   G   + FV N+LID Y+KCG   +  A  +F S+  R +   N
Sbjct: 287 SGRLDVGREVHSLINHRGIELNQFVSNALIDMYAKCG--DLENATSVFESISVRSVACCN 344

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           SMI+ L   G+  EA  +F  M     + D +++  +L      G +    ++F ++  +
Sbjct: 345 SMISCLAIHGKGKEALEMFSTMESLDLKPDEITFIAVLTACVHGGFLMEGLKIFSEMKTQ 404

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           ++                              +  +  +I      G  KEA RL  +M 
Sbjct: 405 DV---------------------------KPNVKHFGCLIHLLGRSGKLKEAYRLVKEMH 437

Query: 304 EAGLKPDDGTLISILAAC 321
              +KP+D  L ++L AC
Sbjct: 438 ---VKPNDTVLGALLGAC 452


>gi|356528451|ref|XP_003532816.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 579

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 182/561 (32%), Positives = 305/561 (54%), Gaps = 17/561 (3%)

Query: 32  QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACV 91
           Q    F         RD Y A   I +L+   ++  A K+F+++   DV  +N+++ A  
Sbjct: 12  QRHSFFVLATLFSSTRDVYHANLDIVALSRAGKVDAARKLFDEMATKDVVTWNSMLSAYW 71

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI---HALIYKCGYFG 148
           QN L  ++  +F  M  + V + N      ++  N ++ F  +      +A  Y      
Sbjct: 72  QNGLLQRSKALFHSMPLRNVVSWNSIIAACVQNDNLQDAFRYLAAAPEKNAASY------ 125

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK-GGELSEARRLFD 207
                N++I   ++CG   +  A++LF +M   ++VS+ +M+ G  +  G +  AR LF+
Sbjct: 126 -----NAIISGLARCG--RMKDAQRLFEAMPCPNVVSYTAMVDGYARVEGGIGRARALFE 178

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
            MP R++VSW  +++G  + G    A+E+F ++P +N V+ + M+ G+ K+G ME A+ L
Sbjct: 179 AMPRRNSVSWVVMINGLVENGLCEEAWEVFVRMPQKNDVARTAMITGFCKEGRMEDARDL 238

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  +  + LV W II++GYA+ G  +EA  L+ QM   G++PDD T +S+  ACA    L
Sbjct: 239 FQEIRCRDLVSWNIIMTGYAQNGRGEEALNLFSQMIRTGMQPDDLTFVSVFIACASLASL 298

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G K HA + K+ F  + +VCNAL+ +++KCG + ++  VF  ++  DLVSWN ++   
Sbjct: 299 EEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIAAF 358

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A HG  +KA   F +M      PD  TF+ +L AC  AG +++ +  F  M  +YGI P+
Sbjct: 359 AQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSACCRAGKVNESMNLFSLMVDNYGIPPR 418

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            EHY C++D++ R+G+L+ A +++  MP + ++ IWG +L AC  H  VEL E     ++
Sbjct: 419 SEHYACLVDVMSRAGQLQRACKIINEMPFKADSSIWGAVLAACSVHLNVELGELAARRIL 478

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L   + G Y MLSNI+AA G W  V  +R+ MK+   +K +  S +++ N+ H F   D
Sbjct: 479 NLDPFNSGAYVMLSNIYAAAGKWKDVHRIRVLMKEQGVKKQTAYSWLQIGNKTHYFVGGD 538

Query: 568 QLHPKSEQIYQMINTLGKDLK 588
             HP    I+  +  +   +K
Sbjct: 539 PSHPNINDIHVALRRITLHMK 559



 Score = 39.3 bits (90), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 44/97 (45%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L +  +  A +IK     D  +   LI+  + C  +  +  VF  I  PD+  +NT+I 
Sbjct: 297 SLEEGSKAHALLIKHGFDSDLSVCNALITVHSKCGGIVDSELVFGQISHPDLVSWNTIIA 356

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125
           A  Q+ L  +A   F  M    V  D  T+  LL AC
Sbjct: 357 AFAQHGLYDKARSYFDQMVTVSVQPDGITFLSLLSAC 393


>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g08510-like [Glycine max]
          Length = 474

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 165/373 (44%), Positives = 242/373 (64%), Gaps = 2/373 (0%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E D  +   +LD YAK G + LA +LF+++P R +  W+ M+ G ++ GDM+ A  LF  
Sbjct: 79  EPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXS 138

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGL 329
           MP++ +VPWT +ISGY+      +A  L+  ME E G+ P+  TL+SIL ACA    L +
Sbjct: 139 MPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEI 198

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLA 388
           G +V A   K  F  N    NA+++MY KCG +D A  VFN + + ++L SWN+M+ GLA
Sbjct: 199 GQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLCSWNSMVVGLA 258

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
           +HG+  KAL L+ +M  EG  PD  TFVG+L ACT  G + KG   F S    + I+P++
Sbjct: 259 VHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKL 318

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508
           EHYGCM+DLLGR+G+L+EA  ++QSM ++P+++IWG LLGAC  H  VELAE   + L  
Sbjct: 319 EHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGACSFHGNVELAEIAAESLFV 378

Query: 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
           L+  +PGNY +LSNI+A+ G W+ VA +R  MK ++  K +G S +E   ++H+F V D+
Sbjct: 379 LEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGAQLHKFIVKDR 438

Query: 569 LHPKSEQIYQMIN 581
            HPKS +I+ +++
Sbjct: 439 SHPKSNEIFALLD 451



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 164/370 (44%), Gaps = 46/370 (12%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNA-QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           V +    P + LYN LI+A   +  +  + F ++  ++  G   +  T+ FL  AC   +
Sbjct: 2   VLHHSSKPTLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLS 61

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L QM+H    K G+  D+F   +L+D Y+K G   + LA+KLF  M  R +  WN+M
Sbjct: 62  SSSLGQMLHTHFIKSGFEPDLFAATALLDMYAKVG--ALELARKLFDEMPVRGVPRWNAM 119

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA-----------------KAGEMNL 232
           +AGL + G++  A  LF  MP R+ V W T++ GY+                 + G M  
Sbjct: 120 MAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPN 179

Query: 233 AFELFEKIP-----------------------HRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           A  L   +P                        +N  + + ++  Y K G ++ A  +F+
Sbjct: 180 AVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFN 239

Query: 270 RMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
            + + + L  W  ++ G A  G   +A  LYDQM   G  PDD T + +L AC + G++ 
Sbjct: 240 EIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGGMVK 299

Query: 329 LGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYG 386
            G  +  S    +           +VD+  + G L  A  V   M+ K D V W A+L  
Sbjct: 300 KGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGALLGA 359

Query: 387 LAMHGQGEKA 396
            + HG  E A
Sbjct: 360 CSFHGNVELA 369



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 118/286 (41%), Gaps = 35/286 (12%)

Query: 275 TLVPWTIIISGYAEKGMAKEAA-RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           TL  +  +I  Y+     +     LY Q+   G  P+  T   + +AC       LG  +
Sbjct: 10  TLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLSSSSLGQML 69

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG-- 391
           H    K  F+ +     AL+DMYAK G+L+ A  +F+ M  + +  WNAM+ GLA  G  
Sbjct: 70  HTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDM 129

Query: 392 -----------------------------QGEKALGLFSRMKDE-GFGPDKYTFVGVLCA 421
                                        Q +KALGLF  M+ E G  P+  T V +L A
Sbjct: 130 DGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPA 189

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C +   ++ G Q   +  R  G          ++++  + G++  A R+   +    N  
Sbjct: 190 CANLXALEIG-QRVEAYARKNGFFKNXYASNAVLEMYVKCGKIDAAWRVFNEIGSLRNLC 248

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
            W +++     H     A E+ D ++  +G+ P + T +  + A T
Sbjct: 249 SWNSMVVGLAVHGECCKALELYDQMLG-EGTSPDDVTFVGLLLACT 293



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 63/348 (18%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFT 113
           +++ LA    M  A+++F  +   +V  + T+I     N    +A  +FL M QEKG+  
Sbjct: 119 MMAGLARFGDMDGALELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGIMP 178

Query: 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKK 173
           +  T   +L AC       + Q + A   K G+F + +  N++++ Y KCG   +  A +
Sbjct: 179 NAVTLVSILPACANLXALEIGQRVEAYARKNGFFKNXYASNAVLEMYVKCG--KIDAAWR 236

Query: 174 LFMSMGE-RDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVS------------ 216
           +F  +G  R++ SWNSM+ GL   GE  +A  L+D+M       D V+            
Sbjct: 237 VFNEIGSLRNLCSWNSMVVGLAVHGECCKALELYDQMLGEGTSPDDVTFVGLLLACTQGG 296

Query: 217 ------------------------WNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTM 251
                                   +  ++D   +AG++  A+E+ + +  + + V W  +
Sbjct: 297 MVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLGRAGQLREAYEVIQSMSMKPDSVIWGAL 356

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWT----IIISG-YAEKGMAKEAARLYDQMEEAG 306
           +   S  G++E+A++  + +    L PW     +I+S  YA  G     A+L   M+ + 
Sbjct: 357 LGACSFHGNVELAEIAAESL--FVLEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSK 414

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           +    G              +  G ++H  I K R    +N   AL+D
Sbjct: 415 ITKSAG-----------HSFIEEGAQLHKFIVKDRSHPKSNEIFALLD 451



 Score = 47.0 bits (110), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/190 (19%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGE-KALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
           V +  +K  L  +N ++   + H Q + +   L+S+++  GF P+++TF  +  ACT   
Sbjct: 2   VLHHSSKPTLFLYNKLIQAYSSHPQHQHRCFSLYSQIRLHGFLPNQHTFNFLFSACTSLS 61

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
               G Q  ++     G  P +     ++D+  + G L+ A +L   MPV      W  +
Sbjct: 62  SSSLG-QMLHTHFIKSGFEPDLFAATALLDMYAKVGALELARKLFDEMPVR-GVPRWNAM 119

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           +    +   ++ A   L+    +   +   +T + + ++    ++K   + L M++ +  
Sbjct: 120 MAGLARFGDMDGA---LELFXSMPSRNVVPWTTMISGYSWNKQYDKALGLFLGMEQEKGI 176

Query: 547 KPSGASSVEV 556
            P+  + V +
Sbjct: 177 MPNAVTLVSI 186


>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
          Length = 493

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 157/362 (43%), Positives = 234/362 (64%), Gaps = 2/362 (0%)

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +LA +LF+ +P R+ V+++T++ G  ++G +  A  +FD MPA   V WT +I G  + G
Sbjct: 122 HLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNG 181

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              EA   +  M   G++PD  TLI++++ACAE G LGLGM VH  + +   + N  + N
Sbjct: 182 RHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIAN 241

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+DMYA+CG ++ A  VF+GM K+ +VSWN+M+ G A +G+   A+  F  M+ EGF P
Sbjct: 242 SLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKP 301

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TF GVL AC+H G  D+G++Y+  M  +YGI  ++EHYGC++DLLGRSGRL+EA+R+
Sbjct: 302 DAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRV 361

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           V +MP+ PN ++ G LL  CR H  V +AE+++  L+ L      NY +LSNI+AA G W
Sbjct: 362 VTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 421

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           +    VR  MK    +K  G S+VE+D +VHEF   D+ HP++E+I QM+  L  ++   
Sbjct: 422 DGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQMLGLLMHEM--A 479

Query: 591 GH 592
           GH
Sbjct: 480 GH 481



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 41/263 (15%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           LA +LF +M  R  V++N++I+GL++ G ++ A  +FD MP  D VSW  ++DG  K G 
Sbjct: 123 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 182

Query: 230 MNLAFELFEKI------P---------------------------------HRNIVSWST 250
            + A   F  +      P                                  RN+   ++
Sbjct: 183 HDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 242

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y++ G +E+A+ +F  M  +T+V W  +I G+A  G   +A   ++ M   G KPD
Sbjct: 243 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 302

Query: 311 DGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
             T   +L AC+  GL   G++ +  +  +Y           +VD+  + G L+ AM V 
Sbjct: 303 AVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVV 362

Query: 370 NGMT-KKDLVSWNAMLYGLAMHG 391
             M  + + V   A+L G  MHG
Sbjct: 363 TTMPMRPNEVVLGALLAGCRMHG 385



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 139/327 (42%), Gaps = 36/327 (11%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS L     +  A +VF+ +  PD   +  LI  CV+N  + +A   F  M   GV  D
Sbjct: 142 VISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPD 201

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T   ++ AC       L   +H L+ + G   ++ + NSLID Y++CG   V LA+++
Sbjct: 202 YVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCG--QVELARQV 259

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEM 230
           F  M +R +VSWNSMI G    G  ++A   F+ M       DAV++  +L   +  G  
Sbjct: 260 FSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLT 319

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +     ++            M   Y     ME    + D +                  G
Sbjct: 320 DEGLRYYD-----------LMRAEYGIAARMEHYGCVVDLL---------------GRSG 353

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             +EA R+   M    ++P++  L ++LA C   G +G+  ++   + +     + N   
Sbjct: 354 RLEEAMRVVTTMP---MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYV- 409

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDL 377
            L ++YA  G  D A  V + M  + L
Sbjct: 410 LLSNIYAAVGKWDGAGKVRSLMKARGL 436



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 37/201 (18%)

Query: 309 PDDGTLISILAACAESG----LLGLGMKVHASINKYRFKCNTNVCNALVDMY-------- 356
           P+D TL+++L+ACA+S        L + VHA + K  F  +  +   LV  Y        
Sbjct: 65  PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHL 123

Query: 357 -----------------------AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
                                   + G +  A  VF+GM   D VSW A++ G   +G+ 
Sbjct: 124 ALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRH 183

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++A+  F  M  +G  PD  T + V+ AC   G +  G+ + + +    G+   V     
Sbjct: 184 DEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGM-WVHRLVVRQGLERNVRIANS 242

Query: 454 MIDLLGRSGRLKEALRLVQSM 474
           +ID+  R G+++ A ++   M
Sbjct: 243 LIDMYARCGQVELARQVFSGM 263



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +++  L+R+  IA  LI   A C Q+ LA +VF+ ++   V  +N++I     N   A A
Sbjct: 228 VVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADA 287

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFV 152
              F  M+ +G   D  T+  +L AC+       G  ++ L++  + +  +  ++G    
Sbjct: 288 VEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYG---- 343

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              ++D   + G +  ++     M M   ++V   +++AG    G++  A +L   + E 
Sbjct: 344 --CVVDLLGRSGRLEEAMRVVTTMPMRPNEVV-LGALLAGCRMHGDVGMAEQLMQHLLEL 400

Query: 213 D 213
           D
Sbjct: 401 D 401


>gi|222635245|gb|EEE65377.1| hypothetical protein OsJ_20684 [Oryza sativa Japonica Group]
          Length = 769

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 164/442 (37%), Positives = 261/442 (59%), Gaps = 18/442 (4%)

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMG--------------ERDIVSWNSMIAGLVKGGEL 199
           N+LI +Y + G    S AK+LF  +               ER++VSWNSM+   +K G++
Sbjct: 46  NTLIVAYGQAG--RFSDAKRLFDMIPKGQYQHNMLKRKGFERNVVSWNSMMICYIKAGDV 103

Query: 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG 259
             AR LF+EMP++D VSWNT++ GY +A +M  + +LF ++P  + VSW+ ++ G+ + G
Sbjct: 104 CSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLIIQGFMQKG 163

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           + E A+  FDRMP +  + W  +ISGY + G    + +L+ +M E G  PD  T  S+LA
Sbjct: 164 EAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLA 223

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLV 378
           ACA   +LGLG ++H  + K  F  +T + NAL+ MY++CG+L++A ++F  M TKKDLV
Sbjct: 224 ACASIPMLGLGAQIHQLVEK-SFVPDTAISNALITMYSRCGALNDAEAIFKQMHTKKDLV 282

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWNA++     HG+  KAL LF  M+     P   TFV +L AC +AG + +G   F +M
Sbjct: 283 SWNALIGCYEHHGRATKALQLFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTM 342

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
             +YGI+ ++EHY  +++L+GR G+L +AL ++ SMP+ P+  +WG  LGAC       L
Sbjct: 343 VHEYGIVARIEHYAALVNLIGRHGQLDDALEVINSMPMAPDRSVWGAFLGACTAKKNEPL 402

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           A+     L  +       Y ++ N+ A  G W   A VR +M++    K  G S ++++ 
Sbjct: 403 AQMAAKELSTINPDSSAPYVLIHNLHAHEGKWGSAAVVREEMERQGIYKQPGYSWIDLEG 462

Query: 559 EVHEFSVCDQLHPKSEQIYQMI 580
           ++H F   D  HP +++I+ ++
Sbjct: 463 KMHVFISGDTWHPNAQEIFSVL 484



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 144/329 (43%), Gaps = 55/329 (16%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +FN++ D D+  +NT+I    Q S   ++ ++F +M +    +              
Sbjct: 106 ARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVS-------------- 151

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             W                       N +I  + + G      A+  F  M ER  +SWN
Sbjct: 152 --W-----------------------NLIIQGFMQKG--EAEHARGFFDRMPERGTISWN 184

Query: 188 SMIAGLVKGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLA---FELFEK- 239
           +MI+G  K G    + +LF +M E     D  +++++L   A    + L     +L EK 
Sbjct: 185 TMISGYEKNGNYISSVKLFSKMLEVGEIPDRHTFSSVLAACASIPMLGLGAQIHQLVEKS 244

Query: 240 -IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMAKEAAR 297
            +P   I   + ++  YS+ G +  A+ +F +M  K  LV W  +I  Y   G A +A +
Sbjct: 245 FVPDTAIS--NALITMYSRCGALNDAEAIFKQMHTKKDLVSWNALIGCYEHHGRATKALQ 302

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMY 356
           L+ +M  A + P   T +S+L+AC  +GL+  G  V  + +++Y          ALV++ 
Sbjct: 303 LFKEMRRAKVMPTHITFVSLLSACVNAGLVSEGRMVFDTMVHEYGIVARIEHYAALVNLI 362

Query: 357 AKCGSLDNAMSVFNGMT-KKDLVSWNAML 384
            + G LD+A+ V N M    D   W A L
Sbjct: 363 GRHGQLDDALEVINSMPMAPDRSVWGAFL 391



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 125/338 (36%), Gaps = 94/338 (27%)

Query: 240 IPHRNIVSWSTMVWGYSKDGDM-EMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKE 294
           +P ++  S STMV G++K+G + E  +LL  R+      K +  +  +I  Y + G   +
Sbjct: 1   MPAKDSASLSTMVSGFTKNGMLHEAEELLTKRLSVTDMDKAVDAYNTLIVAYGQAGRFSD 60

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A RL+D                         ++  G   H  + +  F+ N    N+++ 
Sbjct: 61  AKRLFD-------------------------MIPKGQYQHNMLKRKGFERNVVSWNSMMI 95

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAM------------------------------- 383
            Y K G + +A ++FN M  KDLVSWN M                               
Sbjct: 96  CYIKAGDVCSARALFNEMPDKDLVSWNTMISGYTQASDMKESEKLFWEMPDPDTVSWNLI 155

Query: 384 LYGLAMHGQGEKALGLFSRMKDEG-----------------------FG--------PDK 412
           + G    G+ E A G F RM + G                       F         PD+
Sbjct: 156 IQGFMQKGEAEHARGFFDRMPERGTISWNTMISGYEKNGNYISSVKLFSKMLEVGEIPDR 215

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
           +TF  VL AC     +  G Q    +E+ +  +P       +I +  R G L +A  + +
Sbjct: 216 HTFSSVLAACASIPMLGLGAQIHQLVEKSF--VPDTAISNALITMYSRCGALNDAEAIFK 273

Query: 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
            M  + + + W  L+G    H     A ++   + R K
Sbjct: 274 QMHTKKDLVSWNALIGCYEHHGRATKALQLFKEMRRAK 311


>gi|224118458|ref|XP_002331487.1| predicted protein [Populus trichocarpa]
 gi|222873565|gb|EEF10696.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 194/575 (33%), Positives = 301/575 (52%), Gaps = 46/575 (8%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ--MGLAIKVFNDIQDP 78
           L  +  C ++ Q KQ+ A + K  L    +   ++++  AL     +  A  +F+ +Q+P
Sbjct: 54  LLAMESCTSMLQLKQIQAHMTKTALISHTFPVSRVLAFCALSDSGDINHAHLLFSQLQNP 113

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           + +++NT+IR   +  +    F  F  M +KGV  D  ++ F LKAC         + +H
Sbjct: 114 NTYIWNTMIRGYSKAKMGQTGFLFFCQMVQKGVEMDCRSFVFALKACEQFLGVLEGKSVH 173

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
            +++K G+   + V N L+  Y   G +G+                              
Sbjct: 174 CVVWKMGFVYTLLVQNGLVHFYGLRGCLGL------------------------------ 203

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK-----IPHRNIVSWSTMVW 253
              AR +FDE+ ERD VSW +++DGY+K    + A +LF+      +   N V+   ++ 
Sbjct: 204 ---ARLVFDEISERDVVSWTSMIDGYSKHKWCDEALKLFDSMLMYGVVEPNEVTMIAVLS 260

Query: 254 GYSKDGDMEMAKLLFD----RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
             S+ GD+ + K   +    R   ++L     I+  Y + G    A  ++D M  A   P
Sbjct: 261 SCSQKGDLILGKTFLEYVKTRNVTRSLNLMNAILDMYVKCGCLDSAREIFDTMG-AAFAP 319

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSV 368
            + TL  +L  C + G L +G  +H +  + R+ + +  + NAL+DMYAKCG +  A  V
Sbjct: 320 MENTLACVLPVCGQLGCLDVGQWIHRNYVRMRYNEISVILANALIDMYAKCGVIHEAAKV 379

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428
           FN M +++LVSWN+M+   A HG  ++AL +F RM   GF PD  T VGVL AC+H G +
Sbjct: 380 FNDMPERNLVSWNSMITAYASHGHAKQALSVFERMISGGFKPDDITLVGVLSACSHGGLV 439

Query: 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
            +G +YF +M+R YGI P+ EHY CMIDLLGR G L++A  L+  MP+EP+A  WG L+ 
Sbjct: 440 AEGQEYFQNMKRKYGIEPKNEHYACMIDLLGRVGLLEDAYELITKMPMEPSAAAWGALVH 499

Query: 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
           ACR H  VE+A+     L+ L   D G Y +L+NI A+   W  V   R  M++ R +K 
Sbjct: 500 ACRMHGNVEVAKIAAPRLLELDPEDSGIYVLLANICASGRRWGDVKMARRMMRERRVKKI 559

Query: 549 SGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            G S VEV+ + HEF   D+ HP+SE IY  ++ L
Sbjct: 560 PGRSIVEVEGQFHEFLAGDESHPQSEGIYNALDQL 594


>gi|297729191|ref|NP_001176959.1| Os12g0490100 [Oryza sativa Japonica Group]
 gi|255670316|dbj|BAH95687.1| Os12g0490100 [Oryza sativa Japonica Group]
          Length = 451

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 169/473 (35%), Positives = 259/473 (54%), Gaps = 34/473 (7%)

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           FT   ++K C+     H    +HA + K G     + V  +L+D Y   G+VG       
Sbjct: 11  FTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVG------- 63

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
                                     +ARR+FDEMP ++ V  NT++    +AG+M  A 
Sbjct: 64  --------------------------DARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAR 97

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           E+F+ +  R+ +SW+T++ GY   GD    + LFD M  + +  W  +I+  +E+G   +
Sbjct: 98  EVFDGMAERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLAD 157

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
             +++++M   G +PD  T+  +++ACA+ G L +  +VH  + K   + N +V N+L+D
Sbjct: 158 TVKVFNRMRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLID 217

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAKCG +  A  +F     KD VS+N M+   A HG    AL LF+ M D G  PD  T
Sbjct: 218 MYAKCGCISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVT 277

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F+GVL AC HAG ++ G  YF  M+  Y +    +HY C++DL GR+G ++EA   V++M
Sbjct: 278 FLGVLSACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTM 337

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           PV+P+A +WG LL ACRKH  V++ E     LIR++  +PGNY +L N  A    W+ V 
Sbjct: 338 PVKPHAGVWGALLNACRKHCHVDVGEIAAKELIRIEPKNPGNYVLLRNTLARGQQWDAVE 397

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
           +V+L M++    K +G S VEVD+ VHEF   D  HPK ++IY ++  L  +L
Sbjct: 398 DVQLSMRRKVIDKTAGCSWVEVDSVVHEFLAGDFYHPKFDEIYTILEHLYMEL 450



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 11/238 (4%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +RDP     L+S            ++F+++   +V+ +NT+I AC +    A   +VF  
Sbjct: 105 ERDPISWNTLMSGYLHLGDTATVRELFDEMTVRNVNSWNTMIAACSEEGSLADTVKVFNR 164

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+  G   D  T   L+ AC       +   +H L+ K     +  V NSLID Y+KCG 
Sbjct: 165 MRATGFEPDAATMAVLMSACAQLGSLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGC 224

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTIL 221
             +S A+ LF     +D VS+N MI    + G   +A  LF+ M +     DAV++  +L
Sbjct: 225 --ISQAQFLFTETYPKDTVSYNVMIIAFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVL 282

Query: 222 DGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYSKDGDMEMAKLLFDRMPAK 274
              A AG +      FE +     V      ++ +V  Y + G +E A      MP K
Sbjct: 283 SACAHAGLVEYGKNYFELMKTTYAVQQSPDHYACVVDLYGRAGLIEEAHCFVKTMPVK 340



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 13/202 (6%)

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT-NVCNALVDMYAKCGSLD 363
           +G +P+  T+ S++  C++   +  G++VHA + K    C++ +V  AL+D+Y   G + 
Sbjct: 4   SGPRPNAFTVTSVIKCCSKVRAVHEGLQVHAFLAKAGLGCSSVHVGAALLDLYGNIGLVG 63

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
           +A  VF+ M  K++V  N M+      G    A  +F  M +     D  ++  ++    
Sbjct: 64  DARRVFDEMPVKNVVVGNTMVACNVRAGDMGAAREVFDGMAER----DPISWNTLMSGYL 119

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV---EPNA 480
           H G      + F  M      +  V  +  MI      G L + +++   M     EP+A
Sbjct: 120 HLGDTATVRELFDEM-----TVRNVNSWNTMIAACSEEGSLADTVKVFNRMRATGFEPDA 174

Query: 481 IIWGTLLGACRKHNAVELAEEV 502
                L+ AC +  ++ +A +V
Sbjct: 175 ATMAVLMSACAQLGSLTIAGQV 196



 Score = 40.0 bits (92), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 13/145 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L    Q+   + K  ++ + ++   LI   A C  +  A  +F +    D   YN +I 
Sbjct: 189 SLTIAGQVHGLLQKSCVEMNCHVQNSLIDMYAKCGCISQAQFLFTETYPKDTVSYNVMII 248

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
           A  Q+     A  +F  M + G+  D  T+  +L AC        GKN+F L++  +A+ 
Sbjct: 249 AFAQHGHARDALDLFNAMVDSGLQPDAVTFLGVLSACAHAGLVEYGKNYFELMKTTYAVQ 308

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVV 166
               ++        ++D Y + G++
Sbjct: 309 QSPDHYA------CVVDLYGRAGLI 327


>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
 gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
          Length = 537

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 190/569 (33%), Positives = 287/569 (50%), Gaps = 75/569 (13%)

Query: 24  LHKCKNLNQTKQLFAQIIK---LDLQRDPYIAPKLISSLAL-------CRQMGLAIKVFN 73
           + +CK ++Q  QL A  I    L     P +  K + +L            +  A  +FN
Sbjct: 23  IKQCKTISQLHQLHAYTITNTPLSFHSSPSLLTKFLYTLTTKAKSKSSTSLLHYAKSIFN 82

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
            IQ+P    YNT+IR     S    A   F  M+   V  D+ ++PF LKA         
Sbjct: 83  SIQNPSTFCYNTIIRVHTLLSFPIPALHFFTQMRRLSVPLDSHSFPFTLKA--------- 133

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
                     C   G +F    L      C V+                           
Sbjct: 134 ----------CAQLGGVFSARCL-----HCQVL--------------------------- 151

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
            K G LS            D    N+++ GY  +   N A+++F++ P R++VS++ ++ 
Sbjct: 152 -KFGFLS------------DLYVMNSLIHGYMVSDMSNDAYKVFDESPQRDVVSYNVLID 198

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
           G+ K GD+  A+ LFD MP +  V W  II+G A+    +EA  L+D M +  ++PD+  
Sbjct: 199 GFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAIELFDFMMDLEIRPDNVA 258

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           L+S L+ACA+ G L  G K+H  I +   K +T +   LVD YAKCG +D A+ +F+  +
Sbjct: 259 LVSTLSACAQLGELEKGKKIHDYIERNAMKVDTFLSTGLVDFYAKCGCVDIALKIFDSSS 318

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
            K+L +WNAML GLAMHG GE  L  FSRM + G  PD  + +GVL  C+H+G +D+  +
Sbjct: 319 DKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDGISILGVLVGCSHSGLVDEARK 378

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
            F  ME  YG+  + +HYGCM DLLGR+G +K+ + +++ MP   +  +W  LLG CR H
Sbjct: 379 LFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIKDMPRGGDMSVWSGLLGGCRIH 438

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR-AQKPSGAS 552
             VE+AE+    L+ LK  D G Y++L+N++A    W  V N+R  +   R   K +G S
Sbjct: 439 GDVEIAEKAAKHLMELKPDDGGVYSILANVYANAERWEDVMNIRRSLSSNRVVTKIAGFS 498

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
            +++D   HEF   D LH +S++IY ++N
Sbjct: 499 LIQLDGVAHEFIAGDSLHSESDKIYLVLN 527


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 304/566 (53%), Gaps = 15/566 (2%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L  D +++  LI     C + G A  VF  +   DV  +N ++     + +   A    L
Sbjct: 131 LHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 190

Query: 105 DMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD---IFVPNSLIDSY 160
           DMQ+ G    N  T   LL              IHA   +     +   + +  +L+D Y
Sbjct: 191 DMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMY 250

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-----DAV 215
           +KC    +  A ++F  M  R+ V+W+++I G V    ++EA  LF +M         A 
Sbjct: 251 AKCK--QLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           S  + L   A   ++++  +L   I     H ++ + ++++  Y+K G +  A + FD +
Sbjct: 309 SVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEI 368

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             K  + +  ++SG  + G A+EA  ++ +M+   ++PD  T++S++ AC+    L  G 
Sbjct: 369 AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGK 428

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
             H S+        T++CN+L+DMYAKCG +D +  VF+ M  +D+VSWN M+ G  +HG
Sbjct: 429 CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            G++A  LF  MK++GF PD  TF+ ++ AC+H+G + +G  +F +M   YGILP++EHY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            CM+DLL R G L EA + +QSMP++ +  +WG LLGACR H  ++L ++V   + +L  
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
              GN+ +LSNIF+A G +++ A VR+  K    +K  G S +E++  +H F   DQ HP
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHP 668

Query: 572 KSEQIYQMINTLGKDLKPVGHAAKLS 597
            S  IY  ++ +  D+K +G+ A  S
Sbjct: 669 CSRDIYHELDNIMVDIKKLGYQADTS 694



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 8/246 (3%)

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W   +  +   G + +A+ +FDR+PA     +  +I  Y+  G    A  LY  M    +
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            P+  T   +L AC+    L  G  +HA         +  V  AL+D+Y +C     A +
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN 156

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAG 426
           VF  M  +D+V+WNAML G A HG    A+     M+D  G  P+  T V +L      G
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216

Query: 427 FIDKGVQYFYSMERDYGILPQVEHY----GCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
            + +G        R    L Q E        ++D+  +  +L  A R+   MPV  N + 
Sbjct: 217 ALFQGTSIHAYCLR--ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVT 273

Query: 483 WGTLLG 488
           W  L+G
Sbjct: 274 WSALIG 279


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 289/513 (56%), Gaps = 14/513 (2%)

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
           N Q     L+M  +G+  +   Y  +L  C  +      Q +HA + K  Y   +++   
Sbjct: 458 NRQLKEALLEMGIQGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTR 517

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PE 211
           LI  Y+KC  +G   A+++   M ER++VSW +MI+G  + G  SEA  LF EM      
Sbjct: 518 LIVLYNKCRCLGD--ARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTA 575

Query: 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLL 267
            +  ++ T+L     +    L  ++   +       +I   S+++  Y+K G +  A+ +
Sbjct: 576 PNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRV 635

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           FD +P + +V  T IISGYA+ G+ +EA  L+ +++  G++ +  T  S+L A +    L
Sbjct: 636 FDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAAL 695

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G +VH+ + + +      + N+L+DMY+KCGSL  +  +F+ M ++ ++SWNAML G 
Sbjct: 696 DHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGY 755

Query: 388 AMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSM--ERDYGI 444
           + HG G +A+ LF  MK+E    PD  TF+ VL  C+H G  D+G++ FY M  ++D G 
Sbjct: 756 SKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD-GF 814

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P++EHYGC++DL GR+GR++EA   ++ MP EP A IWG+LLGACR H  V + E V  
Sbjct: 815 EPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVAR 874

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L+ ++  + GNY +LSN++A+ G W+ V  VR  MK+    K  G S +E+D  +H F 
Sbjct: 875 RLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFH 934

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
             D+ HP+ E+++  +  L   +K  G+  +LS
Sbjct: 935 ASDRSHPRKEEVFAKVRELSIKIKEAGYVPELS 967



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 193/374 (51%), Gaps = 16/374 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +++ A +IK   +   Y+  +LI     CR +G A +V +++ + +V  +  +I  
Sbjct: 493 IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 552

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q    ++A  +F++M   G   + FT+  +L +C   + F L + IH+L+ K  +   
Sbjct: 553 YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 612

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
           IFV +SL+D Y+K G   +  A+++F  + ERD+VS  ++I+G  + G   EA    RRL
Sbjct: 613 IFVGSSLLDMYAKAG--KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 670

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFE-----LFEKIPHRNIVSWSTMVWGYSKDGD 260
             E    + V++ ++L   +    ++   +     L  K+P   +V  ++++  YSK G 
Sbjct: 671 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFY-VVLQNSLIDMYSKCGS 729

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILA 319
           +  ++ +FD MP +T++ W  ++ GY++ G+ +EA  L+  M EE  +KPD  T +++L+
Sbjct: 730 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 789

Query: 320 ACAESGLLGLGMKVHASI--NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
            C+  G+   G+++   +   K  F+        +VD++ + G ++ A      M  +  
Sbjct: 790 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 849

Query: 378 VS-WNAMLYGLAMH 390
            + W ++L    +H
Sbjct: 850 AAIWGSLLGACRVH 863


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 185/627 (29%), Positives = 310/627 (49%), Gaps = 73/627 (11%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S  + +   +Q   + K LN+ KQL A +I+     + +++   ++  + C ++   IK+
Sbjct: 73  SDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKL 132

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           F+ +   ++  + ++I     NS   +A   F  M+ +G     F    +L+AC      
Sbjct: 133 FDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAI 192

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
                +H L+ KCG+  ++FV ++L D YSKCG                           
Sbjct: 193 QFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCG--------------------------- 225

Query: 192 GLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP---------- 241
                 ELS+A + F+EMP +DAV W +++DG+ K G+   A   + K+           
Sbjct: 226 ------ELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHV 279

Query: 242 --------------------HRNIV----SWSTMVWG-----YSKDGDMEMAKLLFD-RM 271
                               H  I+     + T +       YSK GDM  A  +F    
Sbjct: 280 LCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHS 339

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
              ++V  T II GY E    ++A   +  +   G++P++ T  S++ ACA    L  G 
Sbjct: 340 DCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGS 399

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++H  + K+ FK +  V + LVDMY KCG  D+++ +F+ +   D ++WN ++   + HG
Sbjct: 400 QLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHG 459

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            G  A+  F+ M   G  P+  TFV +L  C+HAG ++ G+ YF SME+ YG++P+ EHY
Sbjct: 460 LGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHY 519

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            C+IDLLGR+G+LKEA   + +MP EPN   W + LGAC+ H  +E A+   D L++L+ 
Sbjct: 520 SCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEP 579

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
            + G + +LSNI+A    W  V ++R  +K     K  G S V++ N+ H F V D  HP
Sbjct: 580 ENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHP 639

Query: 572 KSEQIYQMINTLGKDLKPVGHAAKLSA 598
           + ++IY+ ++ L   +K +G+  +  +
Sbjct: 640 QKKEIYEKLDNLLDQIKRIGYVPQTES 666


>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
 gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
          Length = 545

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/378 (40%), Positives = 242/378 (64%), Gaps = 1/378 (0%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E  AV  N++++ Y + G+++ A + F+ +  +++VSW+T++  +++ G M  A+ LF  
Sbjct: 148 ESHAVVQNSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYS 207

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP KT+V WT ++SGY   G    A  ++  M+  G +PDD +++++L ACA+ G L LG
Sbjct: 208 MPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSIVAVLPACAQLGALELG 267

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             ++A  +K+       +CNAL++MYAKCG ++ A+ +F+GM++KD++SW+  + GLA H
Sbjct: 268 RWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSEKDVISWSTAIGGLAAH 327

Query: 391 GQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           G+  +A+ LF  M  EG   P+  TFVG+L AC+HAG +D+G++Y   M+ DYG+ P VE
Sbjct: 328 GRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVE 387

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HYGC++DLLGRSGR++ AL  ++ MPV P+  IWG+LL ACR H  VE A    + L+ L
Sbjct: 388 HYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSHGDVETAVVAAERLVEL 447

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  D GN  ML+N++ A G W +VA+ R +++    +K  G S +EVDN V EF     L
Sbjct: 448 EPGDVGNLVMLANVYGAAGRWGEVASTRKEIRSRSTRKTPGCSMIEVDNVVREFVAGQDL 507

Query: 570 HPKSEQIYQMINTLGKDL 587
            P+   I  +++ L   L
Sbjct: 508 GPELGGIATVLDILASKL 525



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 121/433 (27%), Positives = 201/433 (46%), Gaps = 52/433 (12%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +  L  C       +     ++L L +  Y+A +++       +   A +VF  I  P++
Sbjct: 14  IARLRTCATFRDLLRAHGLAVRLCLSQSSYVATQIVHICNAHGRAAHAARVFAQIPAPNL 73

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDM------QEKGVFT--DNFTYPFLLKACNGKNWFH 132
           HL+N +I+A  QN L+  A  V++ M           F+  D FTYPFLLKAC       
Sbjct: 74  HLHNAMIKAYAQNHLHRDAVEVYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASR 133

Query: 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG 192
           L + +HA + + G      V NSLI+ Y++CG   +S A+K F  M E+D+VSWN++I+ 
Sbjct: 134 LGRQVHAHVARSGCESHAVVQNSLIEMYTRCG--DLSTARKAFDGMREKDVVSWNTLISA 191

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-------NI 245
             + G++  AR LF  MP++  VSW  ++ GY   G+   A E+F  +          +I
Sbjct: 192 HARMGQMRRARELFYSMPDKTVVSWTALVSGYTAVGDFTGAVEVFRLMQMEGFEPDDVSI 251

Query: 246 VS---------------W-----------------STMVWGYSKDGDMEMAKLLFDRMPA 273
           V+               W                 + ++  Y+K G +E A  LF  M  
Sbjct: 252 VAVLPACAQLGALELGRWIYAYCSKHGMLGKVYICNALMEMYAKCGCIEEALQLFHGMSE 311

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG-LKPDDGTLISILAACAESGLLGLGMK 332
           K ++ W+  I G A  G A+EA RL++ M+  G + P+  T + +L+AC+ +GL+  G++
Sbjct: 312 KDVISWSTAIGGLAAHGRAREAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLR 371

Query: 333 VHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMH 390
               + + Y  +        +VD+  + G +  A+    GM    D   W ++L     H
Sbjct: 372 YLDQMKEDYGVEPGVEHYGCVVDLLGRSGRIQRALDTIRGMPVPPDGKIWGSLLSACRSH 431

Query: 391 GQGEKALGLFSRM 403
           G  E A+    R+
Sbjct: 432 GDVETAVVAAERL 444


>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
 gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 530

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 186/562 (33%), Positives = 298/562 (53%), Gaps = 73/562 (12%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL   KQ    +I   L RD     K I + +    +  A  VF     P+ +L+NT+IR
Sbjct: 27  NLKTLKQSHCYMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPCPNTYLHNTMIR 86

Query: 89  A-CVQNSLNAQ--AFRVFLDMQEKGVFTDNFTYPFLLKACNGKN--WFHLVQMIHALIYK 143
           A  + +  NA   A  V+  +       D FT+PF+LK     +  WF   + IH  +  
Sbjct: 87  ALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFG--RQIHGQVVV 144

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+   + V   LI  Y  CG +G                                 +AR
Sbjct: 145 FGFDSSVHVVTGLIQMYFSCGGLG---------------------------------DAR 171

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
           ++FDEM  +D                               +  W+ ++ GY K G+M+ 
Sbjct: 172 KMFDEMLVKD-------------------------------VNVWNALLAGYGKVGEMDE 200

Query: 264 AKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           A+ L + MP   +  V WT +ISGYA+ G A EA  ++ +M    ++PD+ TL+++L+AC
Sbjct: 201 ARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSAC 260

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A+ G L LG ++ + ++        ++ NA++DMYAK G++  A+ VF  + ++++V+W 
Sbjct: 261 ADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWT 320

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            ++ GLA HG G +AL +F+RM   G  P+  TF+ +L AC+H G++D G + F SM   
Sbjct: 321 TIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLGKRLFNSMRSK 380

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI P +EHYGCMIDLLGR+G+L+EA  +++SMP + NA IWG+LL A   H+ +EL E 
Sbjct: 381 YGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFKANAAIWGSLLAASNVHHDLELGER 440

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
            L  LI+L+ ++ GNY +L+N+++  G W++   +R  MK    +K +G SS+EV+N V+
Sbjct: 441 ALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAGESSIEVENRVY 500

Query: 562 EFSVCDQLHPKSEQIYQMINTL 583
           +F   D  HP+ E+I++++  +
Sbjct: 501 KFISGDLTHPQVERIHEILQEM 522


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 182/516 (35%), Positives = 278/516 (53%), Gaps = 69/516 (13%)

Query: 82  LYNTLIRAC----VQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
           ++N LIRA     VQN     A  ++L M+   V  D  T+PFLL++ N     H  + +
Sbjct: 26  VWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINTP---HRGRQL 82

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           HA I   G   D FV  SLI+ YS CG                                 
Sbjct: 83  HAQILLLGLANDPFVQTSLINMYSSCGTP------------------------------- 111

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
             + AR+ FDE+ + D  SWN I+   AKAG +++A +LF+++P +N++SWS M+ GY  
Sbjct: 112 --TFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVS 169

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G+ + A  LF                            R    +E + L+P++ T+ S+
Sbjct: 170 CGEYKAALSLF----------------------------RSLQTLEGSQLRPNEFTMSSV 201

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKD 376
           L+ACA  G L  G  VHA I+K   K +  +  +L+DMYAKCGS++ A  +F+ +  +KD
Sbjct: 202 LSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKD 261

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +++W+AM+   +MHG  E+ L LF+RM ++G  P+  TFV VLCAC H G + +G +YF 
Sbjct: 262 VMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFK 321

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M  +YG+ P ++HYGCM+DL  R+GR+++A  +V+SMP+EP+ +IWG LL   R H  V
Sbjct: 322 RMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDV 381

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           E  E  +  L+ L  ++   Y +LSN++A  G W +V ++R  M+    +K  G S VEV
Sbjct: 382 ETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEV 441

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           D  + EF   D  HP+   +Y M++ + K L+  G+
Sbjct: 442 DGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGY 477



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 159/386 (41%), Gaps = 90/386 (23%)

Query: 14  RRLLEEKLQNLHKCKNLNQT-------KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66
           R  L   L +LH    L Q+       +QL AQI+ L L  DP++   LI+  + C    
Sbjct: 53  RMRLHAVLPDLHTFPFLLQSINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPT 112

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT------------- 113
            A + F++I  PD+  +N +I A  +  +   A ++F  M EK V +             
Sbjct: 113 FARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGE 172

Query: 114 ---------------------DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
                                + FT   +L AC         + +HA I K G   D+ +
Sbjct: 173 YKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVL 232

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGL------------------ 193
             SLID Y+KCG   +  AK +F ++G E+D+++W++MI                     
Sbjct: 233 GTSLIDMYAKCG--SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVN 290

Query: 194 -----------------VKGGELSEARRLFDEMPERDAVS-----WNTILDGYAKAGEMN 231
                            V GG +SE    F  M     VS     +  ++D Y++AG + 
Sbjct: 291 DGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIE 350

Query: 232 LAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKLLFDRM----PAKTLVPWTIIISGY 286
            A+ + + +P   +++ W  ++ G    GD+E  ++   ++    PA +   + ++ + Y
Sbjct: 351 DAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANS-SAYVLLSNVY 409

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDG 312
           A+ G  +E   L D ME  G+K   G
Sbjct: 410 AKLGRWREVRHLRDLMEVRGIKKLPG 435


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 192/616 (31%), Positives = 308/616 (50%), Gaps = 81/616 (13%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-DPD 79
           L  L +C +    +Q+  Q     + +  ++  + IS     +    +  +F+ I   P+
Sbjct: 25  LSLLKQCPSTKTLQQIHTQFTIHSIHKPNHLLSQSIS----LKDFTYSTLIFSHITPHPN 80

Query: 80  VHLYNTLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
            + +N ++RA      +      ++  M+   +  +NFT+PF+  AC       + ++ H
Sbjct: 81  DYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMARLAH 140

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
             ++K G   D    NS++  Y +CG  GV                              
Sbjct: 141 CEVFKLGLDNDHHTVNSMVTMYFRCGENGV------------------------------ 170

Query: 199 LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN--------IVS--- 247
              AR++FDE+ E+D VSWN++L GYAK G    A E+F ++   +        +VS   
Sbjct: 171 ---ARKVFDEITEKDLVSWNSLLSGYAKLGFAREAVEVFGRLREESGFEPDEMSLVSVLG 227

Query: 248 ------------W-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
                       W                 S ++  YSK G++  ++ +FD MP++  + 
Sbjct: 228 ACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIFDGMPSRDFIT 287

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W   IS YA+ GMA EA  L+  M+E G+ P+  TL ++L+ACA  G L LG ++     
Sbjct: 288 WNAAISAYAQNGMADEAISLFHSMKENGVDPNKVTLTAVLSACASIGALDLGKQMDEYAT 347

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
               + +  V  AL+DMYAKCGSL++A  VFN M +K+  SWNAM+  LA HG+ ++AL 
Sbjct: 348 HRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMPRKNDASWNAMISALASHGKAKEALS 407

Query: 399 LFSRMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           LF RM DEG    P+  TFV +L AC HAG +D+G + F  M   +G++P++EHY CM+D
Sbjct: 408 LFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGYRLFDMMSTLFGLVPKIEHYSCMVD 467

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL R+G L EA  +++ MP +P+ +  G L  AC++   V++ E V+  L+ L  S+ GN
Sbjct: 468 LLSRAGHLYEAWDVIEKMPEKPDNVTLGALHSACQRKKNVDIGERVIQMLLELDPSNSGN 527

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y + S I+     W+  A +R  M++    K  G S +EV N++ EF   D L   S  +
Sbjct: 528 YIISSKIYENLNMWDDAARMRALMRENGVTKTPGCSWIEVGNQLREFLSGDGLTLDSIDV 587

Query: 577 YQMINTLGKDLKPVGH 592
             +I+ L ++LK  G+
Sbjct: 588 RNIIDLLYEELKKEGY 603


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 166/391 (42%), Positives = 247/391 (63%), Gaps = 11/391 (2%)

Query: 218 NTILDGYAK--AGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT 275
           N IL  Y+K   G++NLA +LF+++PH++ V+  TM+  Y      E A  +F+ MP K 
Sbjct: 17  NNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY-----FESAYKVFELMPEKD 71

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
           +V W  +I+G+A  G   EA  LY +M   G++PD  T++S+L+ACAE   L LG + H 
Sbjct: 72  IVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHV 131

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGE 394
            + K     N +  NAL+D+YAKCG++  A  +F+ M  ++++VSW +++ GLA++G G+
Sbjct: 132 YMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGK 191

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +AL  F  M+ EG  P + TFVGVL AC+H G +++G +YF  M+  Y I+P++EHYGCM
Sbjct: 192 EALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCM 251

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +DLLGR+G LKEA   +Q MP++PNA+IW TLLGAC  H  + L       L++L+  D 
Sbjct: 252 VDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDS 311

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           G+Y +LSN++A+   W+ V  VR  M     +K  G S VE+ N VHEF + D+ HP+SE
Sbjct: 312 GDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSE 371

Query: 575 QIYQMINTLGKDLKPVG---HAAKLSAEIGE 602
            IY+M+  +   LK  G   H A + A+I E
Sbjct: 372 AIYKMLVEMAMKLKLAGYVPHTANVLADIEE 402



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 49/309 (15%)

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H    K G F   +V N+++  YSKC V  ++LA KLF  M  +D V+ ++MI       
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAY---- 56

Query: 198 ELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI------------ 245
               A ++F+ MPE+D V+WN++++G+A  G+ N A  L++++    +            
Sbjct: 57  -FESAYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLS 115

Query: 246 --VSWSTMVWG-------------------------YSKDGDMEMAKLLFDRMP-AKTLV 277
                +T+V G                         Y+K G +  A+ +FD M   + +V
Sbjct: 116 ACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVV 175

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT +I G A  G  KEA   +  ME  GL P + T + +L AC+  G++  G +    +
Sbjct: 176 SWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRM 235

Query: 338 -NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEK 395
             +Y           +VD+  + G L  A      M  + + V W  +L    +HG    
Sbjct: 236 KEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGH--L 293

Query: 396 ALGLFSRMK 404
            LG F+R +
Sbjct: 294 GLGAFARAR 302



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 38/269 (14%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A KVF  + + D+  +N++I     N    +A  ++  M  +GV  D FT   LL AC  
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSW 186
                L +  H  + K G   ++   N+L+D Y+KCG   +S A+K+F  MG ER++VSW
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGT--ISEARKIFDEMGIERNVVSW 177

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDA-----VSWNTILDGYAKAGEMNLAFELFEKIP 241
            S+I GL   G   EA   F +M ER+      +++  +L   +  G +N  FE F+++ 
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDM-EREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMK 236

Query: 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQ 301
            +                        +D +P   +  +  ++      G+ KEA   YD 
Sbjct: 237 EQ------------------------YDIVP--RIEHYGCMVDLLGRAGLLKEA---YDY 267

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLG 330
           +++  L+P+     ++L AC   G LGLG
Sbjct: 268 IQDMPLQPNAVIWRTLLGACTIHGHLGLG 296


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 304/566 (53%), Gaps = 15/566 (2%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           L  D +++  LI     C + G A  VF  +   DV  +N ++     + +   A    L
Sbjct: 131 LHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLL 190

Query: 105 DMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD---IFVPNSLIDSY 160
           DMQ+ G    N  T   LL              IHA   +     +   + +  +L+D Y
Sbjct: 191 DMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMY 250

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-----DAV 215
           +KC    +  A ++F  M  R+ V+W+++I G V    ++EA  LF +M         A 
Sbjct: 251 AKCK--QLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSAT 308

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           S  + L   A   ++++  +L   I     H ++ + ++++  Y+K G +  A + FD +
Sbjct: 309 SVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEI 368

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             K  + +  ++SG  + G A+EA  ++ +M+   ++PD  T++S++ AC+    L  G 
Sbjct: 369 AVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGK 428

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
             H S+        T++CN+L+DMYAKCG +D +  VF+ M  +D+VSWN M+ G  +HG
Sbjct: 429 CSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHG 488

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            G++A  LF  MK++GF PD  TF+ ++ AC+H+G + +G  +F +M   YGILP++EHY
Sbjct: 489 LGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY 548

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            CM+DLL R G L EA + +QSMP++ +  +WG LLGACR H  ++L ++V   + +L  
Sbjct: 549 ICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGP 608

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
              GN+ +LSNIF+A G +++ A VR+  K    +K  G S +E++  +H F   DQ HP
Sbjct: 609 EGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHP 668

Query: 572 KSEQIYQMINTLGKDLKPVGHAAKLS 597
            S  IY  ++ +  D+K +G+ A  S
Sbjct: 669 CSRDIYHELDNIMVDIKKLGYQADTS 694



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 107/246 (43%), Gaps = 8/246 (3%)

Query: 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307
           W   +  +   G + +A+ +FDR+PA     +  +I  Y+  G    A  LY  M    +
Sbjct: 37  WQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRV 96

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            P+  T   +L AC+    L  G  +HA         +  V  AL+D+Y +C     A +
Sbjct: 97  APNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARN 156

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAG 426
           VF  M  +D+V+WNAML G A HG    A+     M+D  G  P+  T V +L      G
Sbjct: 157 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHG 216

Query: 427 FIDKGVQYFYSMERDYGILPQVEHY----GCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
            + +G        R    L Q E        ++D+  +  +L  A R+   MPV  N + 
Sbjct: 217 ALFQGTSIHAYCLR--ACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVR-NDVT 273

Query: 483 WGTLLG 488
           W  L+G
Sbjct: 274 WSALIG 279


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 314/576 (54%), Gaps = 10/576 (1%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +QL   +++  L   P +   L++  +  RQ+G A K+F+ +   D+ ++N +I   VQN
Sbjct: 131 RQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYVQN 190

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                A  +F +M   G+  D+ T+   L +    +    ++ IH  I + G   D+++ 
Sbjct: 191 GFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLN 250

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
           ++LID Y KC      +A K+F    + DIV + +MI+G V  G   +A  +F  + ++ 
Sbjct: 251 SALIDLYFKCR--DAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKK 308

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDMEMAK 265
              +A+++++IL   A    + L  EL   I    +       S ++  Y+K G +++A 
Sbjct: 309 MIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAH 368

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           L+F R+  K  + W  II+ +++ G  +EA  L+ QM   G+K D  T+ + L+ACA   
Sbjct: 369 LIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIP 428

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H  + K  F+ +    +AL++MYAKCG L+ A  VFN M +K+ V+WN+++ 
Sbjct: 429 ALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQEKNEVAWNSIIA 488

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
               HG    +L LF  M +EG  PD  TF+ +L +C HAG ++ GV+YF  M  +YGI 
Sbjct: 489 AYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIP 548

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
            Q+EHY CM DL GR+G L EA  ++ SMP  P A +WGTLLGACR H  VELAE     
Sbjct: 549 AQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRY 608

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           L+ L+  + G Y +L+++ A  G W  V  ++  MK+   QK  G S +EV+N    F  
Sbjct: 609 LLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCVFFA 668

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIG 601
            D  HP+S QIY ++ +L  +L+ VG+  +  A  G
Sbjct: 669 ADGSHPESPQIYSLLKSLLLELRKVGYVPQAVACFG 704



 Score =  171 bits (433), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 144/530 (27%), Positives = 250/530 (47%), Gaps = 37/530 (6%)

Query: 27  CKNLNQT---KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C  LN     K +   I+++    D ++A  LI   A    +  A + F+ + D D  L+
Sbjct: 20  CTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLW 79

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I   VQ   +  A ++F DM       D+ T+  +L     +      + +H L+ +
Sbjct: 80  NVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVR 139

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G      V N+L+  YSK   +G   A+KLF  M + D+V WN MI G V+ G + +A 
Sbjct: 140 SGLDFVPLVGNTLVTVYSKGRQLGD--ARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDAS 197

Query: 204 RLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWGY 255
            LF+EM     + D++++ + L   A++  +    E+   I    ++      S ++  Y
Sbjct: 198 MLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLY 257

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            K  D  MA  +F+      +V +T +ISGY   GM K+A  ++  + +  + P+  T  
Sbjct: 258 FKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFS 317

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           SIL ACA    + LG ++H  I K   +    V +A+++MYAKCG LD A  +F  ++ K
Sbjct: 318 SILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLDLAHLIFGRISIK 377

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA---------- 425
           D + WN+++   +  G+ E+A+ LF +M  EG   D  T    L AC +           
Sbjct: 378 DAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIH 437

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           GF+ KG     + E D      +     +I++  + G+L  A RLV ++  E N + W +
Sbjct: 438 GFMIKG-----AFESD------LFDMSALINMYAKCGKLNIA-RLVFNLMQEKNEVAWNS 485

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           ++ A   H  +  +  +   ++  +G  P + T L+ I ++ G   +V +
Sbjct: 486 IIAAYGYHGYLADSLALFHNMLE-EGIQPDHITFLT-ILSSCGHAGQVED 533



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 196/390 (50%), Gaps = 20/390 (5%)

Query: 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           GVF D +T+P ++K C G N   L ++I  +I + G+  D+FV +SLI  Y+  G   + 
Sbjct: 5   GVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC--IE 62

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYA 225
            A++ F  M ++D V WN MI G V+ GE   A +LF +M     + D+V++  +L    
Sbjct: 63  DARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISC 122

Query: 226 KAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
               +    +L   +    +    +  +T+V  YSK   +  A+ LFD MP   LV W  
Sbjct: 123 SEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNR 182

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GY + G   +A+ L+++M  AG+KPD  T  S L + AES  L    ++H  I ++ 
Sbjct: 183 MIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHG 242

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
              +  + +AL+D+Y KC     A  +FN  TK D+V + AM+ G  ++G  + AL +F 
Sbjct: 243 VILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFR 302

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY----GCMIDL 457
            +  +   P+  TF  +L AC     I  G +        Y I  ++E        ++++
Sbjct: 303 WLLQKKMIPNALTFSSILPACAGLAAIKLGREL-----HGYIIKNELEEKCPVGSAIMNM 357

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
             + GRL  A  +   + ++ +AI W +++
Sbjct: 358 YAKCGRLDLAHLIFGRISIK-DAICWNSII 386



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 178/386 (46%), Gaps = 12/386 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L +L +  +L Q K++   I++  +  D Y+   LI     CR   +A K+FN     D+
Sbjct: 219 LPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDI 278

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            +Y  +I   V N +N  A  +F  + +K +  +  T+  +L AC G     L + +H  
Sbjct: 279 VIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGY 338

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I K        V +++++ Y+KCG   + LA  +F  +  +D + WNS+I    + G+  
Sbjct: 339 IIKNELEEKCPVGSAIMNMYAKCG--RLDLAHLIFGRISIKDAICWNSIITSFSQDGKPE 396

Query: 201 EARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFE----LFEKIPHRNIVSWSTMV 252
           EA  LF +M     + D V+ +  L   A    ++   E    + +     ++   S ++
Sbjct: 397 EAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALI 456

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G + +A+L+F+ M  K  V W  II+ Y   G   ++  L+  M E G++PD  
Sbjct: 457 NMYAKCGKLNIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHI 516

Query: 313 TLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T ++IL++C  +G +  G++    +  +Y           + D++ + G LD A  V   
Sbjct: 517 TFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITS 576

Query: 372 MTKKDLVS-WNAMLYGLAMHGQGEKA 396
           M      S W  +L    +HG  E A
Sbjct: 577 MPFPPAASVWGTLLGACRVHGNVELA 602



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 99/221 (44%), Gaps = 5/221 (2%)

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           M   G+ PD  T   ++  C     + LG  +   I +  F  +  V ++L+ +YA  G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +++A   F+ M  KD V WN M+ G    G+ + A+ LF  M      PD  TF  VL  
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 422 CTHAGFIDKGVQYFYSMERD-YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
                 ++ G Q    + R     +P V +   ++ +  +  +L +A +L   MP + + 
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGN--TLVTVYSKGRQLGDARKLFDMMP-QIDL 177

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           ++W  ++G   ++  ++ A  + + +I   G  P + T  S
Sbjct: 178 VVWNRMIGGYVQNGFMDDASMLFNEMIS-AGIKPDSITFTS 217


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 207/659 (31%), Positives = 336/659 (50%), Gaps = 86/659 (13%)

Query: 28  KNLNQTKQLFAQIIKL-DLQRDPYIAPKLISSLALCRQ-----MGLAIKVFNDIQDPDVH 81
           + + Q  +L A++     L   P  A  L++SL  C +     +  A+ +F D   P   
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLF-DRMPPSTF 68

Query: 82  LYNTLIRACVQ-NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH---LVQMI 137
           L++T +RAC +  S   + F +F  M+  GV  D FT+ FL K  +  +  H   L  M+
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 138 HALIYKCGY-FGDIFVPNSLIDSYSKCGV----------------------------VGV 168
           HA   +        FV NSLI  Y + G+                            +G+
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 169 SLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAV------ 215
               +L +S    RD++SW S+IA   +     EA   F  M      P+   V      
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 216 ------------------------SWNTI---LDGYAKAGEMNLAFELFEKI---PHRNI 245
                                   S N +   +D YAK G+   A ++F+ +   P    
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ- 307

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            SW+ ++ GY K G +++A+ LFD M  + ++ +  +++GY   G  +EA  L+  M   
Sbjct: 308 -SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH 366

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            L+ D+ T++++L ACA  G L  G  +HA I +   + +  +  AL+DMY KCG +D A
Sbjct: 367 DLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF  M K+D+ +W AM+ GLA +G G+ AL  F +M+ +GF P+  +++ VL AC+H+
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
             +++G  YF  M   Y I PQ+EHYGCMIDLLGRSG L EA+ LV++MP++PNA+IW +
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWAS 546

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           +L ACR H  ++LA+   + L++L+  + G Y  L NI+  +  W   + +R+ M++ + 
Sbjct: 547 ILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV 606

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEGV 604
           +K +G SS+ V  +VH+F V D+ HP+  +I  M+  +   LK +G+ + L+++I   V
Sbjct: 607 KKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGY-SPLTSQITVDV 664


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 190/571 (33%), Positives = 308/571 (53%), Gaps = 10/571 (1%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           L A I KL  + + ++   LI + A+C  +  A + F+ I   D+  +  ++    +N  
Sbjct: 63  LHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDR 122

Query: 96  NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155
              + ++F +M+  G   ++FT+  +LKAC G   F + + +H  + K  Y  D++V   
Sbjct: 123 FQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVG 182

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--- 212
           L+D Y+K G     L  ++F  M + D++ W+ MI+   +  +  EA  LF +M      
Sbjct: 183 LLDLYTKFGDANDVL--RVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 213 -DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLL 267
            +  ++ ++L   A    + L  ++   +       N+   + ++  Y+K G ++ +  L
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKL 300

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  +P +  V W  +I GY + G   +A  LY  M E  ++  + T  S+L ACA    +
Sbjct: 301 FMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAM 360

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
            LG ++H+   K  +  +  V NAL+DMYAKCGS+ NA  VF+ ++++D +SWNAM+ G 
Sbjct: 361 ELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGY 420

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           +MHG   +AL  F  M++    P+K TFV +L AC++AG +D G  YF SM +DYGI P 
Sbjct: 421 SMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPC 480

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           +EHY CM+ LLGRSG L +A++L++ +P+EPN  +W  LLGAC  HN V+L       ++
Sbjct: 481 MEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQIL 540

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
           ++   D   + +LSNI+A T  WN VA+VR  MK    +K  G S +E    VH FSV D
Sbjct: 541 QIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSVGD 600

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
             HP  + I  M+  L    +  G+   L+A
Sbjct: 601 TSHPDMKMISGMLEWLNMKTEKAGYVPDLNA 631



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/453 (27%), Positives = 196/453 (43%), Gaps = 74/453 (16%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           + TLI+  VQ+    +   +F  +  +G   + F +  +LK         L   +HA IY
Sbjct: 9   FVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIY 68

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K G+  + FV  +LID+Y+ CG   V+ A++ F ++  +D+VSW  M+A   +     ++
Sbjct: 69  KLGHESNAFVGTALIDAYAVCG--SVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDS 126

Query: 203 RRLFDEMP---------------------------------------ERDAVSWNTILDG 223
            +LF EM                                        E D      +LD 
Sbjct: 127 LQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDL 186

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           Y K G+ N    +FE++P  +++ WS M                               I
Sbjct: 187 YTKFGDANDVLRVFEEMPKHDVIPWSFM-------------------------------I 215

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           S YA+   ++EA  L+ QM  A + P+  T  S+L +CA    L LG +VH  + K    
Sbjct: 216 SRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD 275

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            N  V NAL+D+YAKCG LDN+M +F  +  ++ V+WN M+ G    G G+KAL L+  M
Sbjct: 276 GNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
            +      + T+  VL AC     ++ G Q  +S+         V     +ID+  + G 
Sbjct: 336 LECQVQASEVTYSSVLRACASLAAMELGTQ-IHSLSLKTIYDKDVVVGNALIDMYAKCGS 394

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           +K A RLV  M  E + I W  ++     H  V
Sbjct: 395 IKNA-RLVFDMLSERDEISWNAMISGYSMHGLV 426



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/394 (26%), Positives = 197/394 (50%), Gaps = 15/394 (3%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K +   ++K   + D Y+   L+            ++VF ++   DV  ++ +I    Q+
Sbjct: 162 KSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQS 221

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           + + +A  +F  M+   V  + FT+  +L++C       L + +H  + K G  G++FV 
Sbjct: 222 NQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVS 281

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE-- 211
           N+L+D Y+KCG +  S+  KLFM +  R+ V+WN+MI G V+ G+  +A  L+  M E  
Sbjct: 282 NALMDVYAKCGRLDNSM--KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQ 339

Query: 212 --RDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
                V+++++L   A    M L  ++     + I  +++V  + ++  Y+K G ++ A+
Sbjct: 340 VQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNAR 399

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           L+FD +  +  + W  +ISGY+  G+  EA + +  M+E    P+  T +SIL+AC+ +G
Sbjct: 400 LVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAG 459

Query: 326 LLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAM 383
           LL +G     S +  Y  +        +V +  + G LD A+ +   +  + ++  W A+
Sbjct: 460 LLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRAL 519

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFV 416
           L    +H   +  LG+ S  +     P D+ T V
Sbjct: 520 LGACVIHNDVD--LGIMSAQQILQIDPQDEATHV 551



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 133/261 (50%), Gaps = 11/261 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ+    +NL   KQ+   ++K+ L  + +++  L+   A C ++  ++K+F ++ + + 
Sbjct: 250 LQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNE 309

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT+I   VQ+    +A  ++ +M E  V     TY  +L+AC       L   IH+L
Sbjct: 310 VTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSL 369

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  Y  D+ V N+LID Y+KCG   +  A+ +F  + ERD +SWN+MI+G    G + 
Sbjct: 370 SLKTIYDKDVVVGNALIDMYAKCG--SIKNARLVFDMLSERDEISWNAMISGYSMHGLVG 427

Query: 201 EARRLFDEMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTM 251
           EA + F  M E + V    ++ +IL   + AG +++    F+ +     +      ++ M
Sbjct: 428 EALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCM 487

Query: 252 VWGYSKDGDMEMAKLLFDRMP 272
           VW   + G ++ A  L + +P
Sbjct: 488 VWLLGRSGHLDKAVKLIEEIP 508



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 20/239 (8%)

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP +  V +  +I GY +     E   L+ ++   G + +     +IL          L 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             +HA I K   + N  V  AL+D YA CGS+++A   F+ +  KD+VSW  M+   A +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT--HAGFIDKGV-----QYFYSMERDYG 443
            + + +L LF+ M+  GF P+ +TF GVL AC    A  + K V     +  Y M+   G
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN----AVEL 498
           +         ++DL  + G   + LR+ + MP + + I W  ++    + N    AVEL
Sbjct: 181 V--------GLLDLYTKFGDANDVLRVFEEMP-KHDVIPWSFMISRYAQSNQSREAVEL 230


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 182/564 (32%), Positives = 295/564 (52%), Gaps = 10/564 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++N  + L    +K  L    ++   L+       ++    +VF+++   +V  +  +I 
Sbjct: 131 DVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIIT 190

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V+   N +A   F +M    V  D++T+   LKAC      +  + IHA   K G+  
Sbjct: 191 GLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV 250

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
             FV N+L   Y+KCG +   L   LF  M  RD+VSW ++I  LV+ G+   A + F  
Sbjct: 251 SSFVANTLATMYNKCGKLEYGLT--LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIR 308

Query: 209 MPERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMVWGYSKDGD 260
           M E D      ++  ++ G A    +    +L   I H  + +     ++++  Y+K G 
Sbjct: 309 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 368

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  + ++F  M  + +V W+ II+GY++ G   EA  L   M   G KP +  L S+L+A
Sbjct: 369 LTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C    +L  G ++HA +     +    V +AL++MY KCGS++ A  +F+     D+VSW
Sbjct: 429 CGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSW 488

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            AM+ G A HG   + + LF ++   G  PD  TF+GVL AC+HAG +D G +YF +M +
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRYFNAMSK 548

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y I P  EHYGCMIDLL R+GRL +A  ++++MP   + ++W TLL ACR H  VE   
Sbjct: 549 KYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGR 608

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
              + +++L+ +  G +  L+NI+A+ G W + A++R  MK     K  G S ++V + V
Sbjct: 609 RTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLV 668

Query: 561 HEFSVCDQLHPKSEQIYQMINTLG 584
             F   D+ HP+ E IY M++ L 
Sbjct: 669 FAFVAGDRSHPQGEDIYNMLDLLA 692



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 251/509 (49%), Gaps = 18/509 (3%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L ++    +Q I    Q D   + K +  L     +G A ++F+ +   D   + TLI  
Sbjct: 30  LERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISG 89

Query: 90  CVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            V  + +++A  +F +M+ E G+  D F      KAC   +  +  +++H    K G   
Sbjct: 90  YVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN 149

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            +FV ++L+D Y+K G   +   +++F  M  R++VSW ++I GLV+ G   EA   F E
Sbjct: 150 SVFVGSALLDMYTKNG--KIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSE 207

Query: 209 M----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--NIVSW--STMVWGYSKDGD 260
           M     E D+ ++   L   A +G +N   E+  +   +  ++ S+  +T+   Y+K G 
Sbjct: 208 MWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGK 267

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E    LF++M  + +V WT II+   + G  + A + + +M E+ + P++ T  ++++ 
Sbjct: 268 LEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISG 327

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA    +  G ++HA I       + +V N+++ MYAKCG L ++  +F+ MT++D+VSW
Sbjct: 328 CANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           + ++ G +  G   +A  L S M+ EG  P ++    VL AC +   ++ G Q  ++   
Sbjct: 388 STIIAGYSQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQ-LHAYVL 446

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
             G+         +I++  + G ++EA R+  +     + + W  ++    +H     + 
Sbjct: 447 SIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTAMINGYAEHG---YSR 502

Query: 501 EVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           EV+D   ++   G  P + T +  + A +
Sbjct: 503 EVIDLFEKIPRVGLRPDSVTFIGVLSACS 531


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 180/512 (35%), Positives = 285/512 (55%), Gaps = 14/512 (2%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N  +R     SL  ++  ++  M   G   D F++PF+LK+C   +     Q +H  + 
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI--VSWNSMIAGLVKGGELS 200
           + G   + FV  +LI  Y KCG+V    A+K+F          V +N++I+G     ++S
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLV--EDARKVFEENPHSSQLGVCYNALISGYTANSKVS 135

Query: 201 EARRLFDEMPERD-AVSWNTIL--------DGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
           +A  +F  M E   +V   TIL          Y   G  +L  E  +   +  +   ++ 
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGR-SLHGECVKGGTYSEVAVLNSF 194

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  Y K G +E  + LFD MP K L+ W  +ISGY++ G+A +   L++QM+ +G+ PD 
Sbjct: 195 ITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDP 254

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
            TL+S+L++CA  G   +G +V   +    F  N  + NAL+ MYA+CG+L  A +VF+ 
Sbjct: 255 FTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDI 314

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  K LVSW AM+    MHG GE  L LF  M   G  PD   FV VL AC+H+G  DKG
Sbjct: 315 MPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKG 374

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           ++ F +M+R+Y + P  EHY C++DLLGR+GRL EA+  + SMPVEP+  +WG LLGAC+
Sbjct: 375 LELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACK 434

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  V++AE     +I  +  + G Y ++SNI++ + +   +  +R+ M++   +K  G 
Sbjct: 435 IHKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGY 494

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           S VE   +VH F   D+ H ++E++++M++ L
Sbjct: 495 SYVEHKGKVHLFLAGDRSHEQTEEVHRMLDEL 526



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 191/397 (48%), Gaps = 21/397 (5%)

Query: 24  LHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C +L+     +QL   +I+   + +P++   LIS    C  +  A KVF   ++P  
Sbjct: 57  LKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFE--ENPHS 114

Query: 81  H----LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
                 YN LI     NS  + A  +F  M+E GV  D+ T   L+  C    +  L + 
Sbjct: 115 SQLGVCYNALISGYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRS 174

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H    K G + ++ V NS I  Y KCG   V   ++LF  M  + +++WN++I+G  + 
Sbjct: 175 LHGECVKGGTYSEVAVLNSFITMYMKCG--SVESGRRLFDEMPVKGLITWNAVISGYSQN 232

Query: 197 GELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSW 248
           G   +   LF++M       D  +  ++L   A  G   +  E+ E +       N+   
Sbjct: 233 GLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLS 292

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + ++  Y++ G++  A+ +FD MP K+LV WT +I  Y   GM +    L+D M + G++
Sbjct: 293 NALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIR 352

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           PD    + +L+AC+ SGL   G+++  ++ + Y+ +      + LVD+  + G LD AM 
Sbjct: 353 PDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAME 412

Query: 368 VFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
             + M  + D   W A+L    +H   + A   F+++
Sbjct: 413 FIDSMPVEPDGAVWGALLGACKIHKNVDMAELAFAKV 449



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 117/258 (45%), Gaps = 9/258 (3%)

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F R  A     W + +   A + +  E+  LY  M  +G  PD  +   IL +CA   L 
Sbjct: 7   FVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLP 66

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF--NGMTKKDLVSWNAMLY 385
             G ++H  + +   +    V  AL+ MY KCG +++A  VF  N  + +  V +NA++ 
Sbjct: 67  VSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALIS 126

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           G   + +   A  +F RMK+ G   D  T +G++  CT   ++  G +  +      G  
Sbjct: 127 GYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLG-RSLHGECVKGGTY 185

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
            +V      I +  + G ++   RL   MPV+   I W  ++    ++    LA +VL+ 
Sbjct: 186 SEVAVLNSFITMYMKCGSVESGRRLFDEMPVK-GLITWNAVISGYSQNG---LAYDVLEL 241

Query: 506 LIRLKGSD--PGNYTMLS 521
             ++K S   P  +T++S
Sbjct: 242 FEQMKSSGVCPDPFTLVS 259


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 197/629 (31%), Positives = 327/629 (51%), Gaps = 76/629 (12%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD-MQE 108
           ++   L ++++  R +   + +F+ +      L++T +RAC+Q S  A    + L  M+ 
Sbjct: 36  HLLSSLTNTISAPRHLRYVLSLFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRS 95

Query: 109 KGVFTDNFTYPFLLKACNGKNWFH--LVQMIHALIYKCGY-FGDIFVPNSLIDSYSKCG- 164
            GV T  FT+ F+ + C         L  M+HA   +         V N LI  Y+  G 
Sbjct: 96  GGVRTGAFTFHFVFRCCAAGARARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGL 155

Query: 165 ---------------------VVG-------VSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
                                V+G       +  A++L +   ER++VSW S+IAG  + 
Sbjct: 156 TDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRA 215

Query: 197 GELSEARRLFDEM------PERDAVSWN-------------------------------- 218
           G  ++A   F+ M      P+  AV                                   
Sbjct: 216 GRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLV 275

Query: 219 -TILDGYAKAGEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
             ++D YAK G++  A  +F+ +   +    W+ ++ GY K G +++A+ LFD+M A+ +
Sbjct: 276 VALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDV 335

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           + +  +I+GY   G  ++A +L+ QM   G++ D+ T++S+L ACA  G L  G  +HAS
Sbjct: 336 ITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHAS 395

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           I +   + +  +  AL+DMY KCG +D A +VF+ M ++D+ +W AM+ GLA +G G+ A
Sbjct: 396 IEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDA 455

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L  F +MK +GF P   T++ VL AC+H+  +D+G  +F  M   + + PQVEHYGCMID
Sbjct: 456 LESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMID 515

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LL RSG L EA+ LVQ+MP++PNA+IWG++L ACR H  ++LA    + L++L   +   
Sbjct: 516 LLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAV 575

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y  L NI+  +  W     VR+ M++   +K +G SS+ V  +VH+F   DQ HP + +I
Sbjct: 576 YVQLYNIYIDSRQWADAKRVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEI 635

Query: 577 YQMINTLGKDLKPVGHA---AKLSAEIGE 602
             M+  +   LK VG++   ++++ ++ E
Sbjct: 636 MAMMEEIACRLKSVGYSPVTSRIAVDVDE 664



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 18/197 (9%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   + L A I +  ++ D Y+   L+     C ++  A  VF+ + + DVH +  +I  
Sbjct: 386 LPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAG 445

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
              N +   A   F  M+  G    + TY  +L AC+       G+  F+ ++ +H L  
Sbjct: 446 LAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHP 505

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  ++G       +ID  ++ G++  ++     M M + + V W S+++       +  A
Sbjct: 506 QVEHYG------CMIDLLARSGLLDEAMHLVQTMPM-QPNAVIWGSILSACRVHKNIDLA 558

Query: 203 RRLFDEM----PERDAV 215
           R   + +    PE DAV
Sbjct: 559 RHAAEHLLKLAPEEDAV 575


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 206/655 (31%), Positives = 335/655 (51%), Gaps = 86/655 (13%)

Query: 28  KNLNQTKQLFAQIIKL-DLQRDPYIAPKLISSLALCRQ-----MGLAIKVFNDIQDPDVH 81
           + + Q  +L A++     L   P  A  L++SL  C +     +  A+ +F D   P   
Sbjct: 10  RTVRQAAELHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLF-DRMPPSTF 68

Query: 82  LYNTLIRACVQ-NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH---LVQMI 137
           L++T +RAC +  S   + F +F  M+  GV  D FT+ FL K  +  +  H   L  M+
Sbjct: 69  LFDTALRACSRAGSDPHRPFLLFRRMRRAGVRPDGFTFHFLFKCSSSSSRPHSLLLCTML 128

Query: 138 HALIYKCGY-FGDIFVPNSLIDSYSKCGV----------------------------VGV 168
           HA   +        FV NSLI  Y + G+                            +G+
Sbjct: 129 HAACLRTMLPSAAPFVSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 169 SLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAV------ 215
               +L +S    RD++SW S+IA   +     EA   F  M      P+   V      
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGIAPDEVTVIAVLSA 248

Query: 216 ------------------------SWNTI---LDGYAKAGEMNLAFELFEKI---PHRNI 245
                                   S N +   +D YAK G+   A ++F+ +   P    
Sbjct: 249 CAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ- 307

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            SW+ ++ GY K G +++A+ LFD M  + ++ +  +++GY   G  +EA  L+  M   
Sbjct: 308 -SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRH 366

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            L+ D+ T++++L ACA  G L  G  +HA I +   + +  +  AL+DMY KCG +D A
Sbjct: 367 DLRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF  M K+D+ +W AM+ GLA +G G+ AL  F +M+ +GF P+  +++ VL AC+H+
Sbjct: 427 TIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSYIAVLTACSHS 486

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
             +++G  YF  M   Y I PQ+EHYGCMIDLLGRSG L EA+ LV++MP++PNA+IW +
Sbjct: 487 CLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPIQPNAVIWAS 546

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           +L ACR H  ++LA+   + L++L+  + G Y  L NI+  +  W   + +R+ M++ + 
Sbjct: 547 ILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASKIRMLMEERQV 606

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           +K +G SS+ V  +VH+F V D+ HP+  +I  M+  +   LK +G+ + L+++I
Sbjct: 607 KKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGY-SPLTSQI 660


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 303/576 (52%), Gaps = 50/576 (8%)

Query: 31  NQTKQLFAQIIKLD---------LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           NQ   L+A+  KL          L+RD +    L+S+ A    +      F+ +   D  
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            YNT I     NS   ++  +F  MQ +G     +T   +L A    +     + IH  I
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSI 181

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
               + G++F+ N+L D Y+KC                                 GE+ +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKC---------------------------------GEIEQ 208

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVSWSTMVWGY 255
           AR LFD + +++ VSWN ++ GYAK G+      L  ++      P +  V+ ST++  Y
Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ--VTMSTIIAAY 266

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            + G ++ A+ +F     K +V WT ++ GYA+ G  ++A  L+++M    ++PD  TL 
Sbjct: 267 CQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLS 326

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S++++CA+   L  G  VH          N  V +AL+DMY+KCG +D+A SVFN M  +
Sbjct: 327 SVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTR 386

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           ++VSWNAM+ G A +G  + AL LF  M  + F PD  TF+G+L AC H  +I++G +YF
Sbjct: 387 NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYF 446

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            S+   +G+ P ++HY CM++LLGR+GR+++A+ L+++M  +P+ +IW TLL  C     
Sbjct: 447 DSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +  AE     L  L  +    Y MLSN++A+ G W  VA+VR  MK    +K +G S +E
Sbjct: 507 IVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +DNEVH F+  D+ HP+SE IY+ +N L   L+  G
Sbjct: 567 IDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/317 (32%), Positives = 174/317 (54%), Gaps = 15/317 (4%)

Query: 185 SWNSMIAGLVKGGELSEARRLFDEMPER-----DAVSWNTILDGYAKAGEMNLAFELFEK 239
           ++  ++   V+  E+++A+RL   M        D+   N +L  YAK G++  A  LF+K
Sbjct: 24  AYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDK 83

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           +  R+I SW+ ++  Y+K G ++  K  FDRMP +  V +   I+G++     +E+  L+
Sbjct: 84  MLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELF 143

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M+  G +P + T++SIL A A+   L  G ++H SI    F  N  + NAL DMYAKC
Sbjct: 144 KRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKC 203

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G ++ A  +F+ +TKK+LVSWN M+ G A +GQ EK +GL  +M+  G  PD+ T   ++
Sbjct: 204 GEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTII 263

Query: 420 CACTHAGFIDKGVQYFYSM-ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---P 475
            A    G +D+  + F    E+D      +  +  M+    ++GR ++AL L   M    
Sbjct: 264 AAYCQCGRVDEARRVFSEFKEKD------IVCWTAMMVGYAKNGREEDALLLFNEMLLEH 317

Query: 476 VEPNAIIWGTLLGACRK 492
           +EP++    +++ +C K
Sbjct: 318 IEPDSYTLSSVVSSCAK 334


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 167/501 (33%), Positives = 271/501 (54%), Gaps = 40/501 (7%)

Query: 107 QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166
           Q  G+       P   K+C   +   L + IH+   + G  G++FV +S I  Y++CG  
Sbjct: 4   QGPGLLPGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCG-- 61

Query: 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK 226
                                             +A ++F+EM  RD VSWN ++ G+A 
Sbjct: 62  -------------------------------RPDDAYQMFEEMQYRDVVSWNAMISGFAH 90

Query: 227 AGEMNLAFELFEKI-----PHRNIVSWSTMV--WGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           AG    A ++F ++     P  +  + ++++   G ++  D+ + K +FD M  K L+ W
Sbjct: 91  AGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISW 150

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
             +++ Y    M  EA  L+ +M++ G++PD  TL ++L +C E   L LG ++H  I +
Sbjct: 151 NAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKR 210

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
            R   +  + NAL+DMYA CG L  A  VF+ M  +D+VSW +++     HG G +A+ L
Sbjct: 211 RRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDL 270

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F +M  +G  PD   FV +L AC+HAG +D G  YFYSM  ++ I P++EHY CM+DLLG
Sbjct: 271 FEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLG 330

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G ++EA   +  MP++PN  +WG LLGACR H+ +++     D L+RL     G Y +
Sbjct: 331 RAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVL 390

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           LSNI+A  G W  V+ VR  M+    +K  G S+ E+ + VH F + D  HP+S+ IY+ 
Sbjct: 391 LSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKK 450

Query: 580 INTLGKDLKPVGHAAKLSAEI 600
           ++ L + ++ +G+  ++ A +
Sbjct: 451 LSELLRRIREMGYNPEVEATL 471



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/349 (22%), Positives = 155/349 (44%), Gaps = 39/349 (11%)

Query: 36  LFAQIIKLDLQR-DPYIAPKLISSLALCRQMGLAI--KVFNDIQDPDVHLYNTLIRACVQ 92
           +F +++ L   + D      ++ S+   R   +A+   VF++++   +  +N ++     
Sbjct: 100 VFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVYTN 159

Query: 93  NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
           N ++ +A  +F+ MQ+ G+  D  T   +L +C   +   L + IH +I +      + +
Sbjct: 160 NEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLL 219

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-- 210
            N+L+D Y+ CG   +  A+ +F SMG RD+VSW S+I+   + G   EA  LF++M   
Sbjct: 220 ENALMDMYANCGC--LKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQ 277

Query: 211 --ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
             E D++++  IL   + AG +++    F                 YS   +  +     
Sbjct: 278 GLEPDSIAFVAILAACSHAGLLDMGKHYF-----------------YSMTSEFHI----- 315

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
               A  L  +  ++      G  +EA   YD +    +KP++    ++L AC     + 
Sbjct: 316 ----APKLEHYACMVDLLGRAGCIREA---YDFIMVMPIKPNERVWGALLGACRIHSNMD 368

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           +G+    S+ +   K  T     L ++YA+ G   +   V + M  K +
Sbjct: 369 IGLLAADSLLRLAPK-QTGYYVLLSNIYARAGRWADVSMVRSVMESKGI 416


>gi|242083462|ref|XP_002442156.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
 gi|241942849|gb|EES15994.1| hypothetical protein SORBIDRAFT_08g015260 [Sorghum bicolor]
          Length = 557

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 183/557 (32%), Positives = 294/557 (52%), Gaps = 39/557 (7%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQ 92
            +QL AQ++   L      A  LI+S    R               +V+L+   I A  +
Sbjct: 29  ARQLQAQLLVRGLPLPARAAVALIASSHSPRHARAVFDSAVPAASENVYLWTATIAAYAR 88

Query: 93  N---SLNAQ--AFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           +   SL+A   A  +F  M  +GV   N FT   +++ C+          +H  ++  G 
Sbjct: 89  HASSSLSAAEGALALFRLMLRRGVPRPNAFTASSVVRCCSALRAVREGIQVHGFLFSAGL 148

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
                V  +L+D Y   G V                                 ++ARR+F
Sbjct: 149 GRASHVGAALVDMYGSLGRV---------------------------------ADARRVF 175

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
           DEMP  + V  NT++  Y +AG++    ++F+++  R+ +SW+T++ GY + G+  +A+ 
Sbjct: 176 DEMPSTNVVLGNTMVACYVRAGDVEAGRDVFDRMAERDPISWNTLMMGYLRQGEAGVARD 235

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           LF+ MP + +  W ++I+  +++G+  +A  ++++M  A  +PD  T+  +++ACA+ G 
Sbjct: 236 LFEEMPDRNVNSWNMVIAACSQEGLWADAVEVFNRMRLARFQPDPATMAVLMSACAQLGS 295

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L +  +VH  + K   + N +V N+L+DMYAKCGS+  A  +F     KD VS+N M+  
Sbjct: 296 LSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMICA 355

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LA HG G  AL +F  M +EG  PD  TF+GVL AC HAG +  G  YF SM  +Y I  
Sbjct: 356 LAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIEQ 415

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
             +HY CM+DL GR+G ++EA +L ++MPV+P+A +WG L+ ACRKH  VE+ +     L
Sbjct: 416 SPDHYACMVDLYGRAGLIEEAYQLARAMPVKPHAGVWGALINACRKHCNVEVGKVAAREL 475

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           I ++  +PG Y +L+N  A    W+ V  V   M+    +K +G S +EVD  VHEF + 
Sbjct: 476 IAIEPGNPGTYVLLANTLARGQQWDFVETVWQSMRGKGIEKTAGCSWLEVDRVVHEFLMG 535

Query: 567 DQLHPKSEQIYQMINTL 583
           +  HP S++IY ++  L
Sbjct: 536 ESSHPNSDEIYCILEHL 552



 Score = 40.8 bits (94), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+   Q+   + K  ++ + ++   LI   A C  +  A  +F + +  D   YN +I 
Sbjct: 295 SLSIASQVHGILRKGCVEMNFHVLNSLIDMYAKCGSVSQAHLLFVETRLKDTVSYNVMIC 354

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALI 141
           A  Q+     A ++F +M E+G+  D  T+  +L AC       +GK +F  ++  +A+ 
Sbjct: 355 ALAQHGHGRDALQIFDEMSEEGLQPDAVTFLGVLSACAHAGLVHDGKFYFESMRTNYAIE 414

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVV 166
               ++        ++D Y + G++
Sbjct: 415 QSPDHYA------CMVDLYGRAGLI 433


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 175/508 (34%), Positives = 279/508 (54%), Gaps = 51/508 (10%)

Query: 119 PFLLKACNGKNWFHLVQM---------IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVS 169
           P  LK+ + K    L+Q          IHA + + G+  D F+   L+ S SKC    + 
Sbjct: 41  PKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCH--AID 98

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN----------- 218
            A ++F      ++  + ++I G V  G   EA +L+  M     +  N           
Sbjct: 99  YASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACG 158

Query: 219 ----------------------------TILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                                        I++ Y K GE+  A  +FE++P  ++V+ + 
Sbjct: 159 SQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTV 217

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M+  YS  G +E A  +F R+  K  V WT +I G+        A   +  M+   ++P+
Sbjct: 218 MISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPN 277

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           + T++ +L+AC++ G L +G  VH+ + K+  + N  V NAL++MY++CGS+D A +VF+
Sbjct: 278 EFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFD 337

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            M  +D++++N M+ GL+M+G+  +A+ LF  M      P   TFVGVL AC+H G +D 
Sbjct: 338 EMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDF 397

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G + F+SM RDY + PQ+EHYGCM+DLLGR GRL+EA  L+++M + P+ I+ GTLL AC
Sbjct: 398 GFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSAC 457

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
           + H  +EL E+V   L     +D G Y +LS+++A++G W + A VR +MK+   QK  G
Sbjct: 458 KMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPG 517

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
            SS+EV+NE+HEF + D  HP+ E+IY+
Sbjct: 518 CSSIEVNNEIHEFLLGDLRHPQKERIYE 545



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 196/434 (45%), Gaps = 45/434 (10%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L + +++NQ   + AQ+I+    +DP++  +L+ S + C  +  A ++F    +P+V+LY
Sbjct: 56  LQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLY 115

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
             LI   V +    +A +++  M  + +  DN+    +LKAC  +      + +H+   K
Sbjct: 116 TALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALK 175

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  +  V   +++ Y KCG +G   A+++F  M E D+V+   MI+     G + EA 
Sbjct: 176 LGFSSNRLVRLRIMELYGKCGELGD--ARRVFEEMPE-DVVASTVMISSYSDQGLVEEAG 232

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN------------------- 244
            +F  +  +D V W  ++DG+ +  E N A E F  +   N                   
Sbjct: 233 AVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLG 292

Query: 245 ---IVSW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
              I  W                 + ++  YS+ G ++ A+ +FD M  + ++ +  +IS
Sbjct: 293 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 352

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV-HASINKYRFK 343
           G +  G +++A  L+  M    L+P + T + +L AC+  GL+  G ++ H+    YR +
Sbjct: 353 GLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVE 412

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402
                   +VD+  + G L+ A  +   M    D +    +L    MH   E    +   
Sbjct: 413 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKE 472

Query: 403 MKDEGFGPDKYTFV 416
           ++D G   D  T+V
Sbjct: 473 LEDRG-QADSGTYV 485


>gi|297728297|ref|NP_001176512.1| Os11g0433100 [Oryza sativa Japonica Group]
 gi|62701919|gb|AAX92992.1| hypothetical protein LOC_Os11g24530 [Oryza sativa Japonica Group]
 gi|77550326|gb|ABA93123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125534237|gb|EAY80785.1| hypothetical protein OsI_35965 [Oryza sativa Indica Group]
 gi|125577016|gb|EAZ18238.1| hypothetical protein OsJ_33779 [Oryza sativa Japonica Group]
 gi|255680048|dbj|BAH95240.1| Os11g0433100 [Oryza sativa Japonica Group]
          Length = 622

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 266/433 (61%), Gaps = 4/433 (0%)

Query: 163 CGVV---GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           CG+V    +  A+K+F  M  RD++SW +MI+GL + G + +A  LFD MPER+ VSWN 
Sbjct: 174 CGLVRSGSLERARKMFERMPVRDVMSWTTMISGLARNGSVDDAWVLFDAMPERNVVSWNA 233

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++ GYA+   +  A +LF K+P R++ SW+ M+ G+ ++ D++ A+ LFD MP + ++ W
Sbjct: 234 MISGYARNHRIEEALDLFTKMPIRDVASWNIMITGFIQNKDLKSARQLFDEMPKRNVITW 293

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
           T +++GY +   ++ A +L++ M   G++P+  T +  L AC+    L  G +VH  I K
Sbjct: 294 TTMMNGYLQCMQSEMALKLFNCMLVQGIQPNQVTFLGSLDACSNLAALCEGQQVHQMICK 353

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
              + +T V + L+++YAKCG +  A +VF+   +KDL+SWN ++   A HG G +A+ L
Sbjct: 354 TPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSMEKDLISWNGIIAAYAHHGFGIEAMHL 413

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           +  M++ G+ P+  T+VG+L AC+HAG +D+G++ F SM +D  I+ + EHY C++DL  
Sbjct: 414 YKNMQENGYKPNDATYVGLLSACSHAGLVDEGLKIFESMVKDNSIVVRDEHYTCLVDLCS 473

Query: 460 RSGRLKEALRLVQSMPVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           R+GRL++A RL+    ++P ++ +W  LLG C  H    + +     L+  +  + G YT
Sbjct: 474 RAGRLEDAKRLISWFKIKPTSSTVWSALLGGCNSHGNESIGDLAAKHLLEAEPDNAGTYT 533

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           +L NI+A+ G W + A +R +M     +K  G S +EV N+VH F   D+ H +S+ I  
Sbjct: 534 LLCNIYASAGKWKEAAEIRSEMNVRGLKKQPGCSWIEVANKVHVFVSRDKSHSESDLIND 593

Query: 579 MINTLGKDLKPVG 591
           ++  + + ++  G
Sbjct: 594 LLQDIHRIMRMAG 606



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 164/342 (47%), Gaps = 51/342 (14%)

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNI 245
           N  +A L   G +S+ARRLFD MP+RD VSW  ++  YA+ G +  A  LF++    RN+
Sbjct: 45  NWRVAELAAAGRVSDARRLFDGMPDRDVVSWTAMVAAYARRGMLQEARVLFDRPDARRNV 104

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
           V+W+ ++ GY++   ++ A+ LF+ M  + +V W  ++  Y   G  ++A+ L+++M   
Sbjct: 105 VTWTALLSGYARARRVDEAEALFEGMAERNVVSWNTMLEAYTAVGRVEDASALFNRMP-- 162

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
               D G+   +L     SG L    K+   +        T + + L    A+ GS+D+A
Sbjct: 163 --VRDAGSWNILLCGLVRSGSLERARKMFERMPVRDVMSWTTMISGL----ARNGSVDDA 216

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             +F+ M ++++VSWNAM+ G A + + E+AL LF++M                      
Sbjct: 217 WVLFDAMPERNVVSWNAMISGYARNHRIEEALDLFTKMP--------------------- 255

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
                              +  V  +  MI    ++  LK A +L   MP + N I W T
Sbjct: 256 -------------------IRDVASWNIMITGFIQNKDLKSARQLFDEMP-KRNVITWTT 295

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           ++    +    E+A ++ +C++ ++G  P   T L ++ A +
Sbjct: 296 MMNGYLQCMQSEMALKLFNCML-VQGIQPNQVTFLGSLDACS 336



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 138/344 (40%), Gaps = 88/344 (25%)

Query: 21  LQNLHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD 77
           L +L  C NL    + +Q+   I K   Q D ++   L++  A C ++ LA  VF+   +
Sbjct: 329 LGSLDACSNLAALCEGQQVHQMICKTPSQFDTFVESTLMNLYAKCGEIRLARNVFDFSME 388

Query: 78  PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137
            D+  +N +I A   +    +A  ++ +MQE G   ++ TY  LL AC+           
Sbjct: 389 KDLISWNGIIAAYAHHGFGIEAMHLYKNMQENGYKPNDATYVGLLSACS----------- 437

Query: 138 HALIYKCGY--FGDIFVPNSLI--DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           HA +   G   F  +   NS++  D +  C V                D+ S        
Sbjct: 438 HAGLVDEGLKIFESMVKDNSIVVRDEHYTCLV----------------DLCS-------- 473

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
            + G L +A+RL         +SW                   F+  P  + V WS ++ 
Sbjct: 474 -RAGRLEDAKRL---------ISW-------------------FKIKPTSSTV-WSALLG 503

Query: 254 GYSKDGDMEM----AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           G +  G+  +    AK L +  P      +T++ + YA  G  KEAA +  +M   GLK 
Sbjct: 504 GCNSHGNESIGDLAAKHLLEAEPDNAGT-YTLLCNIYASAGKWKEAAEIRSEMNVRGLKK 562

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353
             G        C+    + +  KVH  +++ +    +++ N L+
Sbjct: 563 QPG--------CS---WIEVANKVHVFVSRDKSHSESDLINDLL 595


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 197/625 (31%), Positives = 308/625 (49%), Gaps = 82/625 (13%)

Query: 49  PYIAPKLISSLALCRQMGLAIKVFNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           P  A  L+++ A   ++  A+  F+ +     D  L+N +I A  + S  A A  VF  +
Sbjct: 88  PVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 107 QEKGVF-TDNFTYPFLLKA---CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
              G    D++++  LL A       +  H  Q+ H  + K G  G + V N+L+  Y K
Sbjct: 148 LASGSLRPDDYSFTALLSAGGHLPNISVRHCAQL-HCSVLKSGAGGALSVCNALVALYMK 206

Query: 163 CG--------------------------VVG------VSLAKKLFMSMGERDIVSWNSMI 190
           C                           VVG      V  A+ +F  +  +  V WN+MI
Sbjct: 207 CESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMI 266

Query: 191 AGLVKGGELSEARRLFDEM----------------------------------------- 209
           +G V  G   EA  LF  M                                         
Sbjct: 267 SGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPN 326

Query: 210 --PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
             PE      N ++  Y+K G + +A  +F+ +  +++VSW+T++ GY +   ++ A  +
Sbjct: 327 FVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F+ MP K  + W +++SGY   G A++A +L+++M    +KP D T    +AAC E G L
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGAL 446

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G ++H  I +  F+ + +  NAL+ MYA+CG++  A  +F  M   D VSWNAM+  L
Sbjct: 447 KHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISAL 506

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
             HG G +AL LF RM  EG  PD+ +F+ VL AC H+G +D+G +YF SM+RD+GI+P 
Sbjct: 507 GQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPG 566

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            +HY  +IDLLGR+GR+ EA  L+++MP EP   IW  +L  CR    +EL     D L 
Sbjct: 567 EDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF 626

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
           ++     G Y +LSN ++A G W   A VR  M+    +K  G S +E  N+VH F V D
Sbjct: 627 KMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGD 686

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGH 592
             HP++ ++Y+ +  +G  ++ +G+
Sbjct: 687 TKHPEAHEVYKFLEMVGAKMRKLGY 711



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 85/220 (38%), Gaps = 37/220 (16%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   KQL   I++L  +        LI+  A C  +  A  +F  + + D   +N +I A
Sbjct: 446 LKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISA 505

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q+    +A  +F  M  +G++ D  ++  +L ACN                       
Sbjct: 506 LGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNH---------------------- 543

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
               + L+D     G       K+ F  +   D   +  +I  L + G + EAR L   M
Sbjct: 544 ----SGLVDE----GFRYFESMKRDFGIIPGED--HYTRLIDLLGRAGRIGEARDLIKTM 593

Query: 210 P-ERDAVSWNTILDGYAKAGEMNL----AFELFEKIPHRN 244
           P E     W  IL G   +G+M L    A +LF+  P  +
Sbjct: 594 PFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 195/612 (31%), Positives = 311/612 (50%), Gaps = 46/612 (7%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K+L+Q KQL   II L  ++ P I PKL++       +  A  +  +        +N LI
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLI 166

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            + V+N L+ +A   +  M  KG+  D FTYP +LKAC  K      + +HA I      
Sbjct: 167 SSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLG 226

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            ++FV NSL+  Y+K G   +S A+ LF +M ERD VSWN+MI+G    G   EA  LF 
Sbjct: 227 WNLFVHNSLVSMYAKTG--ELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFG 284

Query: 208 EMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKI-------------------PHRN 244
           +M     E + ++WNTI  G  ++G    A EL   +                    H  
Sbjct: 285 KMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIG 344

Query: 245 IVSWSTMVWG--------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284
            +     + G                    YS+   +  A  LF     K ++ W  ++S
Sbjct: 345 AIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLS 404

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFK 343
           GY     ++EA+ L+ +M  +G++P+  T+ SIL  CA    L  G + H  I  +  FK
Sbjct: 405 GYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFK 464

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
               + N+LVDMYA+ G +  A  +F+ ++++D V++ +++ G  + G+G +AL LF  M
Sbjct: 465 DYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEM 524

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           K     PD  T V VL AC+H+G + +G++ F  M   YGI+P++EH+ CM+DL GR+G 
Sbjct: 525 KKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAGL 584

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L +A  ++  MP  P++ +W TLLGACR H   E+ E   + L+ ++  + G Y +++N+
Sbjct: 585 LHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIANM 644

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +AA G W+K+A VR  M+    +K  G + V+V +    F V D   P   ++Y ++  L
Sbjct: 645 YAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKLYPLLEGL 704

Query: 584 GKDLKPVGHAAK 595
            + +K   +  K
Sbjct: 705 TELMKDAEYVGK 716


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 192/613 (31%), Positives = 324/613 (52%), Gaps = 76/613 (12%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A   ++  A +VF+ I   D   + T+I    Q      A ++F+DM +  V   
Sbjct: 47  ILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPT 106

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK------------ 162
            FT   +L +C       + + +H+ + K G    + V NSL++ Y+K            
Sbjct: 107 QFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFD 166

Query: 163 -------------------CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
                              CG V ++LA+  F  + ERDIVSWNSMIAG  + G  +EA 
Sbjct: 167 RMKLRNTSSWNAMISLHMNCGRVDLALAQ--FELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 204 RLFDEM-------PERDAVS---------------------------------WNTILDG 223
           + F  +       P+R +++                                  N ++  
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 224 YAKAGEMNLAFELFEK--IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
           YAK+G + +A  + E+  I   ++++++ ++ GY K GD+  A+ +F+ +    +V WT 
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTA 344

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           +I GY + G+  +A  ++  M   G +P+  TL ++L+A +    L  G ++HAS  +  
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKALGLF 400
              + +V NAL  MYAK GS++ A  VFN + + +D VSW +M+  LA HG GE+A+ LF
Sbjct: 405 EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464

Query: 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460
            +M   G  PD  T+VGVL ACTH G +++G  YF  M+  + I P + HY CM+DL GR
Sbjct: 465 EQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGR 524

Query: 461 SGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           +G L+EA + V++MP+EP+ I WG+LL +C+ +  V+LA+   + L+ ++ ++ G Y+ L
Sbjct: 525 AGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSAL 584

Query: 521 SNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580
           +N++++ G W+  A +R  MK    +K  G S V++ N+ H F V D LHP+ ++IY+M+
Sbjct: 585 ANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMM 644

Query: 581 NTLGKDLKPVGHA 593
           + + K++K +G A
Sbjct: 645 DKIWKEIKKMGFA 657



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 160/326 (49%), Gaps = 42/326 (12%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N +++ YAK G    A +LF ++P +   SW+T++ GY+K G +E A  +FD +P +  V
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT II GY + G  ++A +++  M +  + P   TL ++LA+CA +G  G+G KVH+ +
Sbjct: 74  SWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFV 133

Query: 338 NKYRFKCNTNVCNALVDMYAK-------------------------------CGSLDNAM 366
            K        V N+L++MYAK                               CG +D A+
Sbjct: 134 VKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLAL 193

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR-MKDEGFGPDKYTFVGVLCACTHA 425
           + F  ++++D+VSWN+M+ G   HG   +AL  FS  +KD    PD+++    L AC + 
Sbjct: 194 AQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACANL 253

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYG----CMIDLLGRSGRLKEALRLV-QSMPVEPNA 480
             +  G Q        Y +    +  G     +I +  +SG ++ A R++ QS   + + 
Sbjct: 254 EKLSFGKQI-----HGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDV 308

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCL 506
           I +  LL    K   +  A ++ + L
Sbjct: 309 IAFTALLNGYVKLGDITPARQIFNSL 334



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 20/237 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLI 87
           +LN  KQ+ A  I+      P +   L +  A    +  A KVFN + Q+ D   + ++I
Sbjct: 389 SLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMI 448

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHAL 140
            A  Q+ L  +A  +F  M   G+  D+ TY  +L AC        G+++F L++ +H +
Sbjct: 449 MALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKI 508

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG--LVKGGE 198
                ++        ++D + + G++  +      M M E D+++W S+++   + K  +
Sbjct: 509 DPTLSHYA------CMVDLFGRAGLLQEAYKFVENMPM-EPDVIAWGSLLSSCKVYKNVD 561

Query: 199 LSE--ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
           L++  A RL    P     +++ + + Y+  G+ + A ++ + +  R +     + W
Sbjct: 562 LAKVAAERLLLIEPNNSG-AYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSW 617


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 170/439 (38%), Positives = 262/439 (59%), Gaps = 10/439 (2%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDG 223
           +S A ++F  +   +I +WN+MI G  +      A  L+ +M     E D  ++  +L  
Sbjct: 90  MSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKA 149

Query: 224 YAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP 278
            AK  ++    E    I  RN     +   +T+V  Y+  G  E A  LF+ M  + LV 
Sbjct: 150 IAKLMDVREG-EKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 208

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASIN 338
           W  +I+GYA  G   EA  L+ +M   G++PD  T++S+L+ACAE G L LG + H  + 
Sbjct: 209 WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMV 268

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
           K     N +  NAL+D+YAKCGS+  A  VF+ M +K +VSW +++ GLA++G G++AL 
Sbjct: 269 KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALE 328

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           LF  ++ +G  P + TFVGVL AC+H G +D+G  YF  M+ +YGI+P++EHYGCM+DLL
Sbjct: 329 LFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLL 388

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           GR+G +K+A   +Q+MP++PNA++W TLLGAC  H  + L E     L++L+    G+Y 
Sbjct: 389 GRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGDYV 448

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           +LSN++A+   W+ V  VR  M +   +K  G S VE+ N +HEF + D+ HP++E+IY 
Sbjct: 449 LLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEIYV 508

Query: 579 MINTLGKDLKPVGHAAKLS 597
            +  + K LK  G+   +S
Sbjct: 509 KLAEITKLLKLEGYVPHIS 527



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 174/360 (48%), Gaps = 14/360 (3%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           + + L+ C  M  A ++F+ IQ+P++  +NT+IR   ++     A  ++  M    +  D
Sbjct: 80  IFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPD 139

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             TYPFLLKA          + +H++  + G+   +FV N+L+  Y+ CG      A KL
Sbjct: 140 THTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACG--HAESAHKL 197

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEM 230
           F  M ER++V+WNS+I G    G  +EA  LF EM     E D  +  ++L   A+ G +
Sbjct: 198 FELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGAL 257

Query: 231 NL---AFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
            L   A     K+    N+ + + ++  Y+K G +  A  +FD M  K++V WT +I G 
Sbjct: 258 ALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGL 317

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI-NKYRFKCN 345
           A  G  KEA  L+ ++E  GL P + T + +L AC+  G++  G      +  +Y     
Sbjct: 318 AVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPK 377

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
                 +VD+  + G +  A      M  + + V W  +L    +HG    ALG  +R +
Sbjct: 378 IEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH--LALGEVARAQ 435



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 140/315 (44%), Gaps = 21/315 (6%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+ + K  ++ + +++ +  I+   +   ++   L+   A C     A K+F  + + ++
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNL 206

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N++I     N    +A  +F +M  +GV  D FT   LL AC       L +  H  
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G  G++   N+L+D Y+KCG   +  A K+F  M E+ +VSW S+I GL   G   
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCG--SIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGK 324

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR-----NIVSWSTM 251
           EA  LF E+  +      +++  +L   +  G ++  F+ F+++         I  +  M
Sbjct: 325 EALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCM 384

Query: 252 VWGYSKDGDMEMAKLLFDRMPAK-TLVPWTII-----ISGYAEKGMAKEAARLYDQMEEA 305
           V    + G ++ A      MP +   V W  +     I G+   G    A  L  + + +
Sbjct: 385 VDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHS 444

Query: 306 GLKPDDGTLISILAA 320
           G    D  L+S L A
Sbjct: 445 G----DYVLLSNLYA 455



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 94/213 (44%), Gaps = 15/213 (7%)

Query: 315 ISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALV-DMYAKCGSLDNAMSVFNGM 372
           I++L +CA S       ++HA SI       N ++   L+  + + C  +  A  +F+ +
Sbjct: 43  IALLLSCASSKFKF--RQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQI 100

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
              ++ +WN M+ G A       AL L+ +M      PD +T+  +L A      + +G 
Sbjct: 101 QNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREG- 159

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC-- 490
           +  +S+    G    V     ++ +    G  + A +L + M  E N + W +++     
Sbjct: 160 EKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELM-AERNLVTWNSVINGYAL 218

Query: 491 --RKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
             R + A+ L  E     + L+G +P  +TM+S
Sbjct: 219 NGRPNEALTLFRE-----MGLRGVEPDGFTMVS 246


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 182/564 (32%), Positives = 293/564 (51%), Gaps = 10/564 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++N  + L    +K  L    ++   L+       ++    +VF+++   +V  +  +I 
Sbjct: 131 DVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWTAIIT 190

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             V+   N +A   F +M    V  D++T+   LKAC      +  + IHA   K G+  
Sbjct: 191 GLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDV 250

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
             FV N+L   Y+KCG +   L   LF  M  RD+VSW ++I  LV+ G+   A + F  
Sbjct: 251 SSFVANTLATMYNKCGKLEYGLT--LFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIR 308

Query: 209 MPERDA----VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMVWGYSKDGD 260
           M E D      ++  ++ G A    +    +L   I H  + +     ++++  Y+K G 
Sbjct: 309 MRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQ 368

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  + ++F  M  + +V W+ II+GY + G   EA  L   M   G KP +  L S+L+A
Sbjct: 369 LTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSA 428

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           C    +L  G ++HA +     +    V +AL++MY KCGS++ A  +F+     D+VSW
Sbjct: 429 CGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAENDDIVSW 488

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            AM+ G A HG   + + LF ++   G  PD  TF+GVL AC+HAG +D G  YF +M +
Sbjct: 489 TAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHYFNAMSK 548

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y I P  EHYGCMIDLL R+GRL +A  ++++MP   + ++W TLL ACR H  VE   
Sbjct: 549 KYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWSTLLRACRVHGDVERGR 608

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
              + +++L+ +  G +  L+NI+A+ G W + A++R  MK     K  G S ++V + V
Sbjct: 609 RTAERILQLEPNCAGTHITLANIYASKGKWREAADIRKLMKSKGVIKEPGWSWIKVKDLV 668

Query: 561 HEFSVCDQLHPKSEQIYQMINTLG 584
             F   D+ HP+ E IY M++ L 
Sbjct: 669 FAFVAGDRSHPQGEDIYNMLDLLA 692



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 250/509 (49%), Gaps = 18/509 (3%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L ++    +Q I    Q D   + K +  L     +G A ++F+ +   D   + TLI  
Sbjct: 30  LERSNDNLSQNIHFISQTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISG 89

Query: 90  CVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            V  + +++A  +F +M+ E G+  D F      KAC   +  +  +++H    K G   
Sbjct: 90  YVNANDSSEALLLFKNMRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVN 149

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
            +FV ++L+D Y+K G   +   +++F  M  R++VSW ++I GLV+ G   EA   F E
Sbjct: 150 SVFVGSALLDMYTKNG--KIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSE 207

Query: 209 M----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR--NIVSW--STMVWGYSKDGD 260
           M     E D+ ++   L   A +G +N   E+  +   +  ++ S+  +T+   Y+K G 
Sbjct: 208 MWRSRVEYDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGK 267

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E    LF++M  + +V WT II+   + G  + A + + +M E+ + P++ T  ++++ 
Sbjct: 268 LEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISG 327

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA    +  G ++HA I       + +V N+++ MYAKCG L ++  +F+ MT++D+VSW
Sbjct: 328 CANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSW 387

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           + ++ G    G   +A  L S M+ EG  P ++    VL AC +   ++ G Q  ++   
Sbjct: 388 STIIAGYXQGGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQ-LHAYVL 446

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
             G+         +I++  + G ++EA R+  +     + + W  ++    +H     + 
Sbjct: 447 SIGLEHTAMVLSALINMYCKCGSIEEASRIFDAAE-NDDIVSWTAMINGYAEHG---YSR 502

Query: 501 EVLDCLIRLK--GSDPGNYTMLSNIFAAT 527
           EV+D   ++   G  P + T +  + A +
Sbjct: 503 EVIDLFEKIPRVGLRPDSVTFIGVLSACS 531


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 302/572 (52%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            L + +QL A   KL    +  I   L++  A C  +  A+  F + +  +V L+N ++ 
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A         +FR+F  MQ + +  + +TYP +LK C       L + IH+ I K  +  
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 523

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + +V + LID Y+K G   +  A  + +    +D+VSW +MIAG  +     +A   F +
Sbjct: 524 NAYVCSVLIDMYAKLG--KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGD 260
           M +R   S    L     A     A +  ++I  +  VS         + +V  YS+ G 
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E + L F++  A   + W  ++SG+ + G  +EA R++ +M   G+  ++ T  S + A
Sbjct: 642 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            +E+  +  G +VHA I K  +   T VCNAL+ MYAKCGS+ +A   F  ++ K+ VSW
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA++   + HG G +AL  F +M      P+  T VGVL AC+H G +DKG+ YF SM  
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 821

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +YG+ P+ EHY C++D+L R+G L  A   +Q MP++P+A++W TLL AC  H  +E+ E
Sbjct: 822 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 881

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D   Y +LSN++A +  W+     R +MK+   +K  G S +EV N +
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V DQ HP +++I++    L K    +G+
Sbjct: 942 HSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 973



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 244/497 (49%), Gaps = 25/497 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L++ ++L +QI+KL L  +  ++ KL         +  A KVF+++ +  +  +N +I+
Sbjct: 100 SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 159

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN-WFHLVQMIHALIYKCGYF 147
                +L  + F +F+ M  + V  +  T+  +L+AC G +  F +V+ IHA I   G  
Sbjct: 160 ELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLR 219

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               V N LID YS+ G V   LA+++F  +  +D  SW +MI+GL K    +EA RLF 
Sbjct: 220 DSTVVCNPLIDLYSRNGFV--DLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 277

Query: 208 EM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           +M      P   A S  ++L    K   + +  +L   +      S     + +V  Y  
Sbjct: 278 DMYVLGIMPTPYAFS--SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 335

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G++  A+ +F  M  +  V +  +I+G ++ G  ++A  L+ +M   GL+PD  TL S+
Sbjct: 336 LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 395

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           + AC+  G L  G ++HA   K  F  N  +  AL+++YAKC  ++ A+  F     +++
Sbjct: 396 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 455

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V WN ML    +      +  +F +M+ E   P++YT+  +L  C   G ++ G Q    
Sbjct: 456 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 515

Query: 438 MERDYGILPQVEHYGC--MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN- 494
           + +      Q+  Y C  +ID+  + G+L  A  ++     + + + W T++    ++N 
Sbjct: 516 IIKTNF---QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK-DVVSWTTMIAGYTQYNF 571

Query: 495 ---AVELAEEVLDCLIR 508
              A+    ++LD  IR
Sbjct: 572 DDKALTTFRQMLDRGIR 588



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 125/512 (24%), Positives = 234/512 (45%), Gaps = 17/512 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K ++L   +QL   ++KL    D Y+   L+S       +  A  +F+++   D   YNT
Sbjct: 300 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 359

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    Q     +A  +F  M   G+  D+ T   L+ AC+        Q +HA   K G
Sbjct: 360 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 419

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  +  +  +L++ Y+KC  +  +L    F+     ++V WN M+       +L  + R+
Sbjct: 420 FASNNKIEGALLNLYAKCADIETAL--DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 477

Query: 206 FDEMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSK 257
           F +M   + V    ++ +IL    + G++ L  ++  +I   N        S ++  Y+K
Sbjct: 478 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK 537

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A  +  R   K +V WT +I+GY +     +A   + QM + G++ D+  L + 
Sbjct: 538 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 597

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ++ACA    L  G ++HA      F  +    NALV +Y++CG ++ +   F      D 
Sbjct: 598 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 657

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++WNA++ G    G  E+AL +F RM  EG   + +TF   + A +    + +G Q  ++
Sbjct: 658 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHA 716

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           +    G   + E    +I +  + G + +A +    +  + N + W  ++ A  KH    
Sbjct: 717 VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHG--- 772

Query: 498 LAEEVLDCLIRLKGSD--PGNYTMLSNIFAAT 527
              E LD   ++  S+  P + T++  + A +
Sbjct: 773 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 198/396 (50%), Gaps = 18/396 (4%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYFGDIFVPNSLIDSY-SKC 163
           ++ +G+  ++ T  +LL+ C   N      + +H+ I K G   +  +   L D Y  K 
Sbjct: 75  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
            + G   A K+F  M ER I +WN MI  L     + E   LF  M   +         G
Sbjct: 135 DLYG---AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG 191

Query: 224 YAKAGEM-NLAFELFEKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
             +A    ++AF++ E+I  R        + V  + ++  YS++G +++A+ +FD +  K
Sbjct: 192 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 251

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
               W  +ISG ++     EA RL+  M   G+ P      S+L+AC +   L +G ++H
Sbjct: 252 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 311

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
             + K  F  +T VCNALV +Y   G+L +A  +F+ M+++D V++N ++ GL+  G GE
Sbjct: 312 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 371

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGC 453
           KA+ LF RM  +G  PD  T   ++ AC+  G + +G Q + Y+ +  +    ++E  G 
Sbjct: 372 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GA 429

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +++L  +   ++ AL       VE N ++W  +L A
Sbjct: 430 LLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 464


>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 580

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 179/562 (31%), Positives = 289/562 (51%), Gaps = 78/562 (13%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL------- 170
           Y  L+  C       L +++H+   K       F+ N LID YSKC  +  +        
Sbjct: 17  YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76

Query: 171 ----------------------AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                                 A  L   M + ++VS+NS+I+GL   G   E+  +F  
Sbjct: 77  VKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKT 136

Query: 209 M--------------------------PE---------------RDAVSWNTILDGYAKA 227
           M                          PE                + +  N ++D Y K 
Sbjct: 137 MLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKC 196

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           GE +++F +F ++P R++VSW++MV  Y++   +E A  LF +M  K  V WT +I+G+A
Sbjct: 197 GEPDISFSIFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFA 256

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR---FKC 344
           + G   EA  L++QM E G+ P   T  S+L+ACA+  L+  G ++H  I +     + C
Sbjct: 257 QNGRGDEALHLFEQMREEGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFC 316

Query: 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
           N  + NAL+DMY KCG + +A ++F GM +KD+VSWN+++ G A +G GE++L +F RM 
Sbjct: 317 NIFILNALIDMYCKCGQMRSATTLFKGMHEKDIVSWNSLITGFAQNGHGEESLAVFERMI 376

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
           +    P+  TF+G+L AC H G + +G++   SME+DYG+ P+ +HY  MIDLLGR+ RL
Sbjct: 377 EADIRPNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRL 436

Query: 465 KEALRLVQSMPVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           +EA+ L++  P   + + +WG LLGACR H  ++LA    + L +L+  +   Y M+ NI
Sbjct: 437 EEAMGLIKRAPKGSDHVGMWGALLGACRIHGNMDLARRAAEVLFQLEPGNAARYVMVYNI 496

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +AA   W++   VR  M +   +K +  S +EV N  H+F   ++ H +  ++Y++I+ L
Sbjct: 497 YAAASRWDEARQVRRLMMERGLRKEAACSWIEVRNTRHQFVAKERSHCQINEVYEVIHNL 556

Query: 584 GKDLKPVG----HAAKLSAEIG 601
              +   G    H++ L  E G
Sbjct: 557 VDQMYDSGYLPCHSSFLPEEDG 578



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/271 (21%), Positives = 116/271 (42%), Gaps = 38/271 (14%)

Query: 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364
           + L P      S+++ C  +  L LG  +H+   K      T + N L+D Y+KC S+ +
Sbjct: 8   SSLDPAHQHYSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQS 67

Query: 365 AMSVF-------------------------------NGMTKKDLVSWNAMLYGLAMHGQG 393
           A  VF                               + M K +LVS+N+++ GL  HG  
Sbjct: 68  AHKVFHVLPVKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFR 127

Query: 394 EKALGLFSRMKDEGFGP--DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
           +++L +F  M  +      D++T V ++ +C   G   + ++  +      G+   +   
Sbjct: 128 KESLNVFKTMLKQCSNVLFDEFTLVSLVGSCASLG-APELLRQVHGAAIIIGLNSNIIIG 186

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
             +ID  G+ G    +  +   MP E + + W +++ A  + + +E A  +     +++ 
Sbjct: 187 NALIDAYGKCGEPDISFSIFSRMP-ERDVVSWTSMVAAYAQASRLEDAHWLFS---QMQE 242

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
            +  ++T L   FA  G  ++  ++  QM++
Sbjct: 243 KNTVSWTALIAGFAQNGRGDEALHLFEQMRE 273


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 193/592 (32%), Positives = 313/592 (52%), Gaps = 72/592 (12%)

Query: 71  VFNDIQDP---DVHLYNTLIRACVQNSLNAQAFRVFLDM----QEKGV--FTDNFTYPFL 121
           VF++I      DV  +N+++ A V+ S    A  +F +M     EK     +D  +   +
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNI 265

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L AC         + IH+   + G F D FV N+LID+Y+KCG   +  A  +F  M  +
Sbjct: 266 LPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCG--SMKDAVNVFNVMEFK 323

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWN------------------- 218
           D+VSWN+M+ G  + G+   A  LF  M +     D ++W+                   
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 219 ----------------TILDGYAKAGEMNLAFELFEKIPHRNIVSW-------------- 248
                           ++L   A  G ++   E       + ++S               
Sbjct: 384 QQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLV 443

Query: 249 --STMVWGYSKDGDMEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLYDQM-- 302
             + ++  YSK    + A+ +F+ +P   + +V WT++I GYA+ G + +A +L+ +M  
Sbjct: 444 VHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMIS 503

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR-FKCNTN-VCNALVDMYAKCG 360
           +   + P+  T+  IL ACA    L +G ++HA + ++  ++ +   V N L+DMY+KCG
Sbjct: 504 KPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG 563

Query: 361 SLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420
            +D A +VF+ M K++ VSW +M+ G  MHG+G++AL +F +M+  GF PD  +F+ +L 
Sbjct: 564 DVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLY 623

Query: 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
           AC+H+G +D+G+ YF  M  DYG++   +HY C+IDLL RSGRL +A + +Q MP+EP+A
Sbjct: 624 ACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSA 683

Query: 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540
            IW  LL ACR H+ VELAE  L+ L+ +K  + G+YT++SNI+A    W  VA +R  M
Sbjct: 684 AIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLM 743

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           KK+  +K  G S V+       F V D+ HP S +IY ++  L   +K +G+
Sbjct: 744 KKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGY 795



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 165/591 (27%), Positives = 264/591 (44%), Gaps = 89/591 (15%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDP---------------YIAPK-----LISSLALCR 63
           L +C+++N  +Q+  +II   L   P               Y++PK     +++S   C 
Sbjct: 38  LKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTGVVASYLACG 97

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
               A+ V   +       +N L+RA ++     +A  V   M   G   D+FT P+ LK
Sbjct: 98  ATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDHFTLPYALK 157

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV-GVSLAKKLFMSMGERD 182
           AC     +      H LI   G+  ++FV N+L+  YS+ G +   SL        G  D
Sbjct: 158 ACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDD 217

Query: 183 IVSWNSMIAGLVKGGELSEARRLFDEMP---------ER--------------------- 212
           ++SWNS++A  VKG     A  LF EM          ER                     
Sbjct: 218 VISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKALPQ 277

Query: 213 ---------------DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK 257
                          DA   N ++D YAK G M  A  +F  +  +++VSW+ MV GY++
Sbjct: 278 TKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQ 337

Query: 258 DGDMEMAKLLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            G    A  LF  M  + +    + W+ +I+GYA++G  +EA   + QM   G +P+  T
Sbjct: 338 SGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVT 397

Query: 314 LISILAACAESGLLGLGMKVHA-SINKYRFKCNTN-----------VCNALVDMYAKCGS 361
           +IS+L+ACA  G L  GM+ HA S+ K     + +           V NAL+DMY+KC S
Sbjct: 398 IISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRS 457

Query: 362 LDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALGLFSRM--KDEGFGPDKYTFVG 417
              A ++FN + +++  +V+W  M+ G A +G    AL LFS M  K     P+ YT   
Sbjct: 458 FKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISC 517

Query: 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPV 476
           +L AC H   +  G Q    + R +     V     C+ID+  + G +  A  +  SMP 
Sbjct: 518 ILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMP- 576

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           + N + W +++     H   + A ++ D + +  G  P + + L  ++A +
Sbjct: 577 KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQK-AGFVPDDISFLVLLYACS 626


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 201/589 (34%), Positives = 325/589 (55%), Gaps = 21/589 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC+ L+  +++F      ++    +    LIS+ A    + +A ++F+++  PD   YNT
Sbjct: 55  KCRRLSAARRVFDHTHDCNV----FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNT 110

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI A  +      AF++FL+M+E  +  D FT   ++ AC G N   L++ +HAL    G
Sbjct: 111 LIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITAC-GIN-VGLIRQLHALSVVTG 168

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARR 204
               + V N+LI SYSK G +    A+++F  + E RD VSWNSM+   ++  E S+A  
Sbjct: 169 LDSYVSVGNALITSYSKNGFL--KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALE 226

Query: 205 LFDEMPER----DAVSWNTILDGYAKA----GEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           L+ EM  R    D  +  ++L  +       G +    +L +   H+N    S ++  YS
Sbjct: 227 LYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYS 286

Query: 257 KDGD-MEMAKLLFDRMPAKTLVPWTIIISGYA-EKGMAKEAARLYDQMEEAGLKPDDGTL 314
           K G  M   + +FD +    LV W  +ISGY+  + ++ EA   + Q++  G +PDD +L
Sbjct: 287 KCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSL 346

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           + +++AC+       G +VH    K     N  +V NAL+ MY+KCG+L +A ++F+ M 
Sbjct: 347 VCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           + + VS+N+M+ G A HG G ++L LF RM +  F P   TF+ VL AC H G ++ G  
Sbjct: 407 EHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKI 466

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
           YF  M++ +GI P+  H+ CMIDLLGR+G+L EA RL++++P +P    W  LLGACR H
Sbjct: 467 YFNMMKQKFGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIH 526

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             VELA +  + L++L   +   Y ML+NI++  G     A+VR  M+    +K  G S 
Sbjct: 527 GNVELAIKAANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSW 586

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL-SAEIG 601
           +EV+  +H F   D  HP  ++I + +  + + +K VG+  ++ SA +G
Sbjct: 587 IEVNRRIHIFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVG 635



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 150/296 (50%), Gaps = 8/296 (2%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N  L  Y+K   ++ A  +F+     N+ S++T++  Y+K+  +E+A  LFD MP    V
Sbjct: 47  NHFLLLYSKCRRLSAARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSV 106

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            +  +I+ YA +G  + A +L+ +M EA L  D  TL  I+ AC  +  +GL  ++HA  
Sbjct: 107 SYNTLIAAYARRGDTQPAFQLFLEMREAFLDMDGFTLSGIITACGIN--VGLIRQLHALS 164

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKA 396
                    +V NAL+  Y+K G L  A  +F+ +++ +D VSWN+M+     H +G KA
Sbjct: 165 VVTGLDSYVSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKA 224

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC-MI 455
           L L+  M   G   D +T   VL A T+   +  G+Q+   + +      Q  H G  +I
Sbjct: 225 LELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSG--YHQNSHVGSGLI 282

Query: 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           DL  + G      R V      P+ ++W T++     +   +L++E L+C  +L+G
Sbjct: 283 DLYSKCGGCMLDCRKVFDEISNPDLVLWNTMISGYSLYE--DLSDEALECFRQLQG 336


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 188/577 (32%), Positives = 301/577 (52%), Gaps = 39/577 (6%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH-LYNTLIR 88
           L + KQ+ A  IK     + ++   L+   A C+ +  A  +F    D   H L+  ++ 
Sbjct: 154 LEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVT 213

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN    +A   F DM+ +G+  + FT+P +L AC   +       +H  I + G+  
Sbjct: 214 GYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGA 273

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++FV ++L+D YSKCG   +S A+++  +M   D VSWNSMI G V+ G   EA  LF  
Sbjct: 274 NVFVGSALVDMYSKCG--DLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRI 331

Query: 209 MPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----STMVWGYSKDGD 260
           M  R    D  ++ ++L+ ++   +M  A  +   I      ++    + +V  Y+K G 
Sbjct: 332 MHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGY 391

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
            + A  +F++M  K ++ WT +++G    G  +EA RL+ +M   G+ PD   + ++L+A
Sbjct: 392 FDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSA 451

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CAE  +L  G +VHA+  K     + +V N+LV MYAKCG +++A  VF+ M  +D+++W
Sbjct: 452 CAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITW 511

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            A++ G A +G+G                              HAG ++ G  YF SME 
Sbjct: 512 TALIVGYAQNGRGRD----------------------------HAGLVEHGRSYFQSMEE 543

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            YGI P  EHY CMIDLLGRSG+L EA  L+  M V+P+A +W  LL ACR H  VEL E
Sbjct: 544 VYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGE 603

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
              + L  L+  +   Y +LSN+++A G W + A  R  MK     K  G S +E+ ++V
Sbjct: 604 RAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKV 663

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           H F   D+ HP++ +IY  ++ +   +K  G+   ++
Sbjct: 664 HRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMN 700



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 192/437 (43%), Gaps = 45/437 (10%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y F  K C+      L   I   +  CG        N ++ + SKCG   V  A+KLF  
Sbjct: 9   YTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCG--RVDDARKLFDV 66

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M +RD  SWN+MI      G L+EAR+LF E P R  ++W++++ GY + G    A ELF
Sbjct: 67  MPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELF 126

Query: 238 EKIPHR----NIVSWST-----------------------------------MVWGYSKD 258
            ++ +     N  +W +                                   +V  Y+K 
Sbjct: 127 WEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKC 186

Query: 259 GDMEMAKLLFDRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
             +  A+ LF+  P K   V WT +++GY++ G   +A   +  M   G++ +  T  SI
Sbjct: 187 KCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSI 246

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L AC      G G +VH  I +  F  N  V +ALVDMY+KCG L NA  +   M   D 
Sbjct: 247 LTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDP 306

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSWN+M+ G    G GE+AL LF  M       D++T+  VL  C       +     +S
Sbjct: 307 VSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVL-NCFSFVMDMRNAMSVHS 365

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           +    G          ++D+  + G    A  + + M  + + I W +L+  C  + + E
Sbjct: 366 LIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKM-TDKDVISWTSLVTGCVHNGSYE 424

Query: 498 LAEEVLDCLIRLKGSDP 514
            A  +  C +R+ G  P
Sbjct: 425 EALRLF-CEMRIMGIHP 440



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 162/331 (48%), Gaps = 10/331 (3%)

Query: 218 NTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           N +L   +K G ++ A +LF+ +P R+  SW+TM+  Y+  G +  A+ LF   P ++ +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            W+ +ISGY   G   EA  L+ +M+  G +P+  T  S+L  C+   LL  G ++HA  
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-GMTKKDLVSWNAMLYGLAMHGQGEKA 396
            K +F  N  V   LVDMYAKC  +  A  +F     K++ V W AM+ G + +G G KA
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           +  F  M+ EG   +++TF  +L AC        G Q    + R  G    V     ++D
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-GFGANVFVGSALVD 283

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL----IRLKGS 512
           +  + G L  A R++++M V+ + + W +++  C +     L EE L       +R    
Sbjct: 284 MYSKCGDLSNARRMLETMEVD-DPVSWNSMIVGCVRQG---LGEEALSLFRIMHLRHMKI 339

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543
           D   Y  + N F+   D     +V   + KT
Sbjct: 340 DEFTYPSVLNCFSFVMDMRNAMSVHSLIVKT 370



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 132/301 (43%), Gaps = 20/301 (6%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++     + + I+K   +    +   L+   A       A  VF  + D DV  + +L+ 
Sbjct: 356 DMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVT 415

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            CV N    +A R+F +M+  G+  D      +L AC         + +HA   K G   
Sbjct: 416 GCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGS 475

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE-------LSE 201
            + V NSL+  Y+KCG   +  A K+F SM  +D+++W ++I G  + G        +  
Sbjct: 476 SLSVDNSLVSMYAKCGC--IEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDHAGLVEH 533

Query: 202 ARRLFDEMPERDAVS-----WNTILDGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGY 255
            R  F  M E   +      +  ++D   ++G++  A EL  ++    +   W  ++   
Sbjct: 534 GRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAAC 593

Query: 256 SKDGDMEM----AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              G++E+    A  LF+  P K  VP+ ++ + Y+  G  +EAA+    M+  G+  + 
Sbjct: 594 RVHGNVELGERAANNLFELEP-KNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEP 652

Query: 312 G 312
           G
Sbjct: 653 G 653


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  324 bits (830), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 195/574 (33%), Positives = 304/574 (52%), Gaps = 16/574 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           + + AQ IK       ++   L++  A C  +  A  VF  ++  D+  +NTL+   V N
Sbjct: 177 QHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLN 236

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
             + +A ++F D +         TY  ++  C       L + +H+ + K G+     V 
Sbjct: 237 GRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVM 296

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER- 212
            +L+D+Y+K G +  +L   L MS G +++VSW +MI G ++ G++  A  LF  M E  
Sbjct: 297 TALMDAYNKAGQLDKALDVFLLMS-GSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDG 355

Query: 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMA 264
              + ++++TIL       E +   ++  ++   N      V  + MV  YSK    E A
Sbjct: 356 VAPNDLTYSTIL----TVSEASFPPQIHAQVIKTNYECTPTVGTALMV-SYSKLCSTEEA 410

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F  +  K +V W+ +++ YA+ G    A   + +M   GLKP++ T+ S + ACA  
Sbjct: 411 LSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASP 470

Query: 325 GL-LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              + LG + HA   K+R      V +ALV MYA+ GS++NA  VF   T +DL+SWN+M
Sbjct: 471 AAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSM 530

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           L G A HG  +KAL +F +M+ EG   D  TF+ V+  C HAG +++G QYF  M RDYG
Sbjct: 531 LSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYG 590

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           I P ++HY CM+DL  R+G+L E + L++ MP      IW  LLGACR H  VEL +   
Sbjct: 591 ITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAA 650

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
           + L+ L+  D   Y +LSNI++A G W +   VR  M   + +K +G S +++ N+VH F
Sbjct: 651 EKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFF 710

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
              D+ HP SEQIY  +  +   LK  G+    S
Sbjct: 711 IASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTS 744



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 129/466 (27%), Positives = 230/466 (49%), Gaps = 23/466 (4%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           KVF  +   +V  + +L+   +Q  +      +F  M+ +GV+ + FT+  +L     + 
Sbjct: 112 KVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQG 171

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
              L Q +HA   K G    +FV NSL++ Y+KCG+  V  A+ +F  M  RD+VSWN++
Sbjct: 172 MVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGL--VEEARVVFCRMETRDMVSWNTL 229

Query: 190 IAGLVKGGELSEARRLFDEMPERDAV------SWNTILDGYAKAGEMNLAFELFEKIPHR 243
           +AGLV  G   EA +LF +   R ++      +++T+++  A    + LA +L   +   
Sbjct: 230 MAGLVLNGRDLEALQLFHD--SRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKH 287

Query: 244 NIVSW----STMVWGYSKDGDMEMAKLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARL 298
              S+    + ++  Y+K G ++ A  +F  M  ++ +V WT +I G  + G    AA L
Sbjct: 288 GFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAAL 347

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           + +M E G+ P+D T  +IL     S       ++HA + K  ++C   V  AL+  Y+K
Sbjct: 348 FSRMREDGVAPNDLTYSTILTVSEAS----FPPQIHAQVIKTNYECTPTVGTALMVSYSK 403

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
             S + A+S+F  + +KD+VSW+AML   A  G    A   F +M   G  P+++T    
Sbjct: 404 LCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSA 463

Query: 419 LCAC-THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477
           + AC + A  +D G Q F+++   +     +     ++ +  R G ++ A + V     +
Sbjct: 464 IDACASPAAGVDLGRQ-FHAISIKHRCHDALCVSSALVSMYARKGSIENA-QCVFERQTD 521

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
            + + W ++L    +H   + A +V    + ++G D    T LS I
Sbjct: 522 RDLLSWNSMLSGYAQHGYSQKALDVFR-QMEVEGIDMDGLTFLSVI 566



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 161/364 (44%), Gaps = 75/364 (20%)

Query: 98  QAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNS 155
           QA   FLD   + G          ++K C       L + +HAL  +CG+  GDI V  S
Sbjct: 37  QALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTS 96

Query: 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215
           L+D Y                       ++W+S++ G          R++F+ M +R+ V
Sbjct: 97  LVDMY-----------------------MNWHSVLDG----------RKVFEGMLKRNVV 123

Query: 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNI-------------------------VSWST 250
           +W ++L GY +AG +     LF ++    +                         V   +
Sbjct: 124 TWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQS 183

Query: 251 MVWG--------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAA 296
           + +G              Y+K G +E A+++F RM  + +V W  +++G    G   EA 
Sbjct: 184 IKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEAL 243

Query: 297 RLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356
           +L+     +     + T  +++  CA    LGL  ++H+S+ K+ F    NV  AL+D Y
Sbjct: 244 QLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAY 303

Query: 357 AKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
            K G LD A+ VF  M+  +++VSW AM+ G   +G    A  LFSRM+++G  P+  T+
Sbjct: 304 NKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTY 363

Query: 416 VGVL 419
             +L
Sbjct: 364 STIL 367



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 132/271 (48%), Gaps = 13/271 (4%)

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           M W    DG     + +F+ M  + +V WT +++GY + G+  +   L+ +M   G+ P+
Sbjct: 102 MNWHSVLDG-----RKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPN 156

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
             T  S+L+  A  G++ LG  VHA   K+       VCN+L++MYAKCG ++ A  VF 
Sbjct: 157 PFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFC 216

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLF--SRMKDEGFGPDKYTFVGVLCA-CTHAGF 427
            M  +D+VSWN ++ GL ++G+  +AL LF  SR          Y+ V  LCA   H G 
Sbjct: 217 RMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGL 276

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
                +  +S    +G          ++D   ++G+L +AL +   M    N + W  ++
Sbjct: 277 ----ARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMI 332

Query: 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
             C ++  + LA  +    +R  G  P + T
Sbjct: 333 DGCIQNGDIPLAAALFS-RMREDGVAPNDLT 362



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           + P +T  PWT+  S   +  + +      D     G     G L+ I+  C       L
Sbjct: 16  KFPTRT--PWTMPFSTTWQGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVL 73

Query: 330 GMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           G ++HA  +       +  V  +LVDMY    S+ +   VF GM K+++V+W ++L G  
Sbjct: 74  GKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYI 133

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
             G     + LF RM+ EG  P+ +TF  VL      G +D G Q+ ++    +G    V
Sbjct: 134 QAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLG-QHVHAQSIKFGCCSTV 192

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
                ++++  + G ++EA R+V       + + W TL+ 
Sbjct: 193 FVCNSLMNMYAKCGLVEEA-RVVFCRMETRDMVSWNTLMA 231


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 292/537 (54%), Gaps = 32/537 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F+ + D DV  +N++I   V N L  +   ++  M   G+  D  T   +L  C  
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L + +H+L  K  +   I   N+L+D YSKCG +  +L  ++F  MGER++VSW 
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL--RVFEKMGERNVVSWT 321

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           SMIAG  + G    A +L  +M +     D V+  +IL   A++G ++   ++ + I   
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 244 NIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           N+ S     + ++  Y+K G ME A  +F  M  K ++ W  +I                
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI---------------- 425

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
                  LKPD  T+  +L ACA    L  G ++H  I +  +  + +V NALVD+Y KC
Sbjct: 426 -----GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L  A  +F+ +  KDLVSW  M+ G  MHG G +A+  F+ M+D G  PD+ +F+ +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+H+G +++G ++FY M+ D+ I P++EHY CM+DLL R+G L +A   ++++P+ P+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           A IWG LL  CR ++ +ELAE+V + +  L+  + G Y +L+NI+A    W +V  +R +
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 540 MKKTRAQKPSGASSVEVDNEVHEF-SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           + K   +K  G S +E+  +V+ F S  +  HP S+ I  ++  + + +K  GH  K
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPK 717



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 164/330 (49%), Gaps = 35/330 (10%)

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G+L E RR+FD M +++   WN ++  YAK G+   +  LF+ +  + I           
Sbjct: 148 GDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI----------- 196

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           +    E A  LFD++  + ++ W  +ISGY   G+ +    +Y QM   G+  D  T+IS
Sbjct: 197 EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIIS 256

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L  CA SG L LG  VH+   K  F+   N  N L+DMY+KCG LD A+ VF  M +++
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSW +M+ G    G+ + A+ L  +M+ EG   D      +L AC  +G +D G     
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-- 374

Query: 437 SMERDYGILPQVEH--YGC--MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG---- 488
               DY     +E   + C  ++D+  + G ++ A  +  +M V+ + I W T++G    
Sbjct: 375 ---HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIGELKP 430

Query: 489 ----------ACRKHNAVELAEEVLDCLIR 508
                     AC   +A+E  +E+   ++R
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILR 460



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 208/471 (44%), Gaps = 87/471 (18%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           TY  +L+ C G   F   + +H++I       D  +   L+  Y+ CG   +   +++F 
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCG--DLKEGRRVFD 158

Query: 177 SMGERDIVSWNSMIAGLVKGGELSE--------------------ARRLFDEMPERDAVS 216
           +M ++++  WN M++   K G+  E                    A  LFD++ +RD +S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPH---------------------------------- 242
           WN+++ GY   G       +++++ +                                  
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 243 -----RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                R I   +T++  YSK GD++ A  +F++M  + +V WT +I+GY   G +  A +
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIK 338

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L  QME+ G+K D   + SIL ACA SG L  G  VH  I     + N  VCNAL+DMYA
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS++ A SVF+ M  KD++SWN M+        GE               PD  T   
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSRTMAC 437

Query: 418 VLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           VL AC     +++G + + Y +   Y     V +   ++DL  + G L  A RL+  M  
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLA-RLLFDMIP 494

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             + + W  ++     H     A    +  +R  G +P   + +S ++A +
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 194/500 (38%), Gaps = 143/500 (28%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL----- 82
           K+    K++ + I    +  D  +  KL+S  A C  +    +VF+ ++  +V+L     
Sbjct: 113 KSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMV 172

Query: 83  ----------------------------------------------YNTLIRACVQNSLN 96
                                                         +N++I   V N L 
Sbjct: 173 SEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
            +   ++  M   G+  D  T   +L  C       L + +H+L  K  +   I   N+L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------ 210
           +D YSKCG +  +L  ++F  MGER++VSW SMIAG  + G    A +L  +M       
Sbjct: 293 LDMYSKCGDLDGAL--RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL 350

Query: 211 ---------------------------------ERDAVSWNTILDGYAKAGEMNLAFELF 237
                                            E +    N ++D YAK G M  A  +F
Sbjct: 351 DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVF 410

Query: 238 EKIPHRNIVSWSTMVW-----------------------------------GYSKD---- 258
             +  ++I+SW+TM+                                    GYS D    
Sbjct: 411 STMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 259 ----------GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                     G + +A+LLFD +P+K LV WT++I+GY   G   EA   +++M +AG++
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 309 PDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           PD+ + ISIL AC+ SGLL  G +  +   N +  +        +VD+ ++ G+L  A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 368 VFNGM-TKKDLVSWNAMLYG 386
               +    D   W A+L G
Sbjct: 591 FIETLPIAPDATIWGALLCG 610



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 142/336 (42%), Gaps = 70/336 (20%)

Query: 24  LHKCK---NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LH C    +L+  K +   I   +++ + ++   L+   A C  M  A  VF+ +   D+
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT+I                       +  D+ T   +L AC   +     + IH  
Sbjct: 419 ISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERGKEIHGY 457

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + GY  D  V N+L+D Y KCGV+G  LA+ LF  +  +D+VSW  MIAG    G  +
Sbjct: 458 ILRNGYSSDRHVANALVDLYVKCGVLG--LARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 201 EARRLFDEMP----ERDAVSWNTIL----------------------------------- 221
           EA   F+EM     E D VS+ +IL                                   
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 222 -DGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDR---MPAKTL 276
            D  ++ G ++ A+E  E +P   +   W  ++ G     D+E+A+ + +R   +  +  
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENS 635

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             + ++ + YAE    +E  RL +++ + GL+ + G
Sbjct: 636 GYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPG 671


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 198/586 (33%), Positives = 314/586 (53%), Gaps = 27/586 (4%)

Query: 36  LFAQIIKL--DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           L+  ++KL  D   D ++    I   A    +  A ++F+   + +  ++NT+I   VQN
Sbjct: 240 LYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQN 299

Query: 94  SLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
           +   +A  +F+ + E   F  D+ T+   L A +   W  L + +HA I K      + +
Sbjct: 300 NCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILKSSTILQVVI 359

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
            N++I  YS+CG +G S   K+F +M ERD+V+WN+M++  V+ G   E   L  EM ++
Sbjct: 360 LNAIIVMYSRCGSIGTSF--KVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQ 417

Query: 213 ----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG--------YSKDGD 260
               D+V+   +L   +     NL  +   K  H  ++       G        Y+K G 
Sbjct: 418 GFMVDSVTLTALLSLAS-----NLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDMYAKSGL 472

Query: 261 MEMAKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           +  A+ LF++     +    W  +I+GY + G+++E   ++ +M E  ++P+  TL SIL
Sbjct: 473 ITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASIL 532

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            AC   G +GLG ++H    +     N  V  AL+DMY+K G++  A +VF    +K+ V
Sbjct: 533 PACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAETLEKNSV 592

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           ++  M+     HG GE+AL LF  M   G  PD  TFV +L AC++AG +D+G++ F SM
Sbjct: 593 TYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSM 652

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI-IWGTLLGACRKHNAVE 497
           ER+Y I P  EHY C+ D+LGR GR+ EA   V+ +  E N   IWG+LLGACR H   E
Sbjct: 653 EREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFE 712

Query: 498 LAEEVLDCLIRL-KGSD-PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           L + V + L+ + KGS   G + +LSNI+AA G+W+ V  VR +M++    K +G S VE
Sbjct: 713 LGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVE 772

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIG 601
           V   V+ F   D  HP+  +IYQM+  L  ++K  G+   L+ + G
Sbjct: 773 VAGHVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKPCLNLQTG 818



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 137/547 (25%), Positives = 237/547 (43%), Gaps = 73/547 (13%)

Query: 61  LCRQ--MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNFT 117
           LCRQ     A+ +F+ I  P   L+NT+I   + N++   A   +  M+       D++T
Sbjct: 47  LCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYT 106

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC----GVVGVS---- 169
           +   LKAC       L + +H  + +  +     V NSL++ YS C      +G +    
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 170 ---LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
              L +++F +M +R++V+WN+MI+  VK   L EA ++F  M         VS+  +  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 223 GYAKAGEM---NLAFELFEKIPHRNIVSW---STMVWGYSKDGDMEMAKLLFDRMPAKTL 276
              +  +    N+ + L  K+    +  +   S+ ++ Y++ G ++ A+ +FD    +  
Sbjct: 227 AVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQ-MEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
             W  +I GY +     EA  L+ Q ME      DD T +S L A ++   L LG ++HA
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHA 346

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            I K        + NA++ MY++CGS+  +  VF+ M ++D+V+WN M+     +G  ++
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACT-----------HAGFIDKGVQ------YFYSM 438
            L L   M+ +GF  D  T   +L   +           HA  I  G+Q      Y   M
Sbjct: 407 GLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDGYLIDM 466

Query: 439 ERDYGILPQVEH--------------YGCMIDLLGRSGRLKEALRLVQSM---PVEPNAI 481
               G++   +               +  MI    ++G  +E   + + M    V PNA+
Sbjct: 467 YAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAV 526

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRL--------------KGSDPGNYTMLSNIFAAT 527
              ++L AC     + L +++    IR                 S  G  T   N+FA T
Sbjct: 527 TLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSGAITYAENVFAET 586

Query: 528 GDWNKVA 534
            + N V 
Sbjct: 587 LEKNSVT 593



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 195/389 (50%), Gaps = 20/389 (5%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  + + + L+  +QL A I+K        I   +I   + C  +G + KVF+++ + DV
Sbjct: 329 LTAISQLQWLDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDV 388

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT++ A VQN L+ +   +  +MQ++G   D+ T   LL   +      + +  HA 
Sbjct: 389 VTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAY 448

Query: 141 IYKCG--YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM--SMGERDIVSWNSMIAGLVKG 196
           + + G  + G   +   LID Y+K G+  ++ A++LF   S  +RD  +WN+MIAG  + 
Sbjct: 449 LIRHGIQFEG---MDGYLIDMYAKSGL--ITTAQQLFEKNSXYDRDEATWNAMIAGYTQN 503

Query: 197 GELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSW 248
           G   E   +F +M E+    +AV+  +IL      G + L  ++         ++N+   
Sbjct: 504 GLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVG 563

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + ++  YSK G +  A+ +F     K  V +T +I  Y + GM + A  L+  M  +G+K
Sbjct: 564 TALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIK 623

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           PD  T ++IL+AC+ +GL+  G+++  S+ + Y+ + ++     + DM  + G +  A  
Sbjct: 624 PDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYE 683

Query: 368 VFNGMTKK--DLVSWNAMLYGLAMHGQGE 394
              G+ ++      W ++L    +HG+ E
Sbjct: 684 FVKGLGEEGNTFRIWGSLLGACRIHGEFE 712


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 303/568 (53%), Gaps = 27/568 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   +Q+ +  ++     D +I   LI   + C  +  A +VF+ +  PDV  Y +LI A
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA-LIYKCGYFG 148
             +N     A    + M ++G+  +  T   +L AC       L Q IH  LI K G   
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRS 245

Query: 149 -DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             ++   +LID YS+ G     LAK +F S+  +++VSW SM+   ++ G L EA ++F 
Sbjct: 246 QSVYSSTALIDFYSRNG--EFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFG 303

Query: 208 EM------PERDAVSWNTILDGYAKAGEMNLAFELF-EKIPH---RNIVSWSTMVWGYSK 257
           +M      P   A+S   I+ G    G + L  +L    I H    +I   + ++  Y +
Sbjct: 304 DMISEGVDPNEFALS---IVLG--ACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR 358

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +E  + + +++    LV WT  IS   + G  ++A  L  QM   G  P+     S+
Sbjct: 359 TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 418

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKK 375
           L++CA+   L  GM+ H      +  C++ +C  NAL++MY+KCG + +A   F+ M   
Sbjct: 419 LSSCADVASLDQGMQFHCL--ALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH 476

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+ SWN++++G A HG   KAL +FS+M+  G  PD  TF+GVL  C H+G +++G  +F
Sbjct: 477 DVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFF 536

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   Y   P   HY CMID+LGR+GR  EALR++  MP EP+A+IW TLL +C+ H  
Sbjct: 537 RLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRN 596

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +++ +   D L+ L   D  +Y ++SNI+A  G+W     VR +M +T  +K +G S +E
Sbjct: 597 LDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIE 656

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           ++NEVH F+  D  HP S+ IYQM+  L
Sbjct: 657 INNEVHTFASRDMSHPNSDSIYQMLGEL 684



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 232/479 (48%), Gaps = 14/479 (2%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  +  K ++ L    ++  A+ +F+ +   +V  + +++    +N     A  +F DM 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           E GV  ++F     L AC         + +H+L  + G+ GD ++ + LI+ YS+CG   
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG--S 164

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG 223
           +  AK++F  M   D+V + S+I+   + GE   A     +M ++    +  +  TIL  
Sbjct: 165 LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 224 YAKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
             +     +   L +KI  R  ++ S + ++  YS++G+ ++AK +FD +  K +V W  
Sbjct: 225 CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCS 284

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           ++  Y   G  +EA +++  M   G+ P++  L  +L AC   G +GLG ++H S  K+ 
Sbjct: 285 MMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLGRQLHCSAIKHD 341

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
              +  V NAL+ MY + G ++   ++ N +   DLVSW   +     +G GEKA+ L  
Sbjct: 342 LITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLC 401

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +M  EGF P+ Y F  VL +C     +D+G+Q F+ +    G   ++     +I++  + 
Sbjct: 402 QMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKC 460

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           G++  A RL   +    +   W +L+    +H     A EV    +R  G  P + T L
Sbjct: 461 GQMGSA-RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFS-KMRSNGIKPDDSTFL 517



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 67/288 (23%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+Q  Q     +KL    +      LI+  + C QMG A   F+ +   DV  +N+LI 
Sbjct: 427 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 486

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+    +A  VF  M+  G+  D+ T+  +L  CN        ++   L        
Sbjct: 487 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRL-------- 538

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                  +ID YS             F          +  MI  L + G   EA R+ ++
Sbjct: 539 -------MIDQYS-------------FTPAPSH----YACMIDMLGRNGRFDEALRMIND 574

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           MP E DA+ W T+L                    HRN                +++ KL 
Sbjct: 575 MPFEPDALIWKTLLASCKL---------------HRN----------------LDIGKLA 603

Query: 268 FDR---MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            DR   +  +    + ++ + YA  G  ++A ++  +M+E G+K D G
Sbjct: 604 ADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAG 651


>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
 gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
          Length = 438

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 234/362 (64%), Gaps = 2/362 (0%)

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +LA +LF+ +P R+ V+++T++ G  ++G +  A  +FD MPA   V WT +I G  + G
Sbjct: 67  HLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNG 126

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              EA   +  M   G++PD  TLI++++ACAE G LGLGM VH  + +   + N  + N
Sbjct: 127 RHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIAN 186

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+DMYA+CG ++ A  VF+GM K+ +VSWN+M+ G A +G+   A+  F  M+ EGF P
Sbjct: 187 SLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKP 246

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TF GVL AC+H G  D+G++Y+  M  +YGI  ++EHYGC++DLLGRSG+L+EA+R+
Sbjct: 247 DAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRV 306

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           V +MP+ PN ++ G LL  CR H  V +AE+++  L+ L      NY +LSNI+AA G W
Sbjct: 307 VTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 366

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           +    VR  MK    +K  G S+VE+D +VHEF   D+ HP++E+I QM+  L  ++   
Sbjct: 367 DGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQMLGLLMHEMA-- 424

Query: 591 GH 592
           GH
Sbjct: 425 GH 426



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 41/263 (15%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           LA +LF +M  R  V++N++I+GL++ G ++ A  +FD MP  D VSW  ++DG  K G 
Sbjct: 68  LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 127

Query: 230 MNLAFELFEKI------P---------------------------------HRNIVSWST 250
            + A + F  +      P                                  RN+   ++
Sbjct: 128 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 187

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y++ G +E+A+ +F  M  +T+V W  +I G+A  G   +A   ++ M   G KPD
Sbjct: 188 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 247

Query: 311 DGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
             T   +L AC+  GL   G++ +  +  +Y           +VD+  + G L+ AM V 
Sbjct: 248 AVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVV 307

Query: 370 NGMT-KKDLVSWNAMLYGLAMHG 391
             M  + + V   A+L G  MHG
Sbjct: 308 TTMPMRPNEVVLGALLAGCRMHG 330



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 139/327 (42%), Gaps = 36/327 (11%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS L     +  A +VF+ +  PD   +  LI  CV+N  + +A   F  M   GV  D
Sbjct: 87  VISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPD 146

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T   ++ AC       L   +H L+ + G   ++ + NSLID Y++CG   V LA+++
Sbjct: 147 YVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCG--QVELARQV 204

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEM 230
           F  M +R +VSWNSMI G    G  ++A   F+ M       DAV++  +L   +  G  
Sbjct: 205 FSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLT 264

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +     ++            M   Y     ME                +  ++      G
Sbjct: 265 DEGLRYYD-----------LMRAEYGIAARMEH---------------YGCVVDLLGRSG 298

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             +EA R+   M    ++P++  L ++LA C   G +G+  ++   + +     + N   
Sbjct: 299 QLEEAMRVVTTMP---MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYV- 354

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDL 377
            L ++YA  G  D A  V + M  + L
Sbjct: 355 LLSNIYAAVGKWDGAGKVRSLMKARGL 381



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 93/214 (43%), Gaps = 38/214 (17%)

Query: 309 PDDGTLISILAACAESG----LLGLGMKVHASINKYRFKCNTNVCNALVDMY-------- 356
           P+D TL+++L+ACA+S        L + VHA + K  F  +  +   LV  Y        
Sbjct: 10  PNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFASRLPHL 68

Query: 357 -----------------------AKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
                                   + G +  A  VF+GM   D VSW A++ G   +G+ 
Sbjct: 69  ALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRH 128

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
           ++A+  F  M  +G  PD  T + V+ AC   G +  G+ + + +    G+   V     
Sbjct: 129 DEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGM-WVHRLVVRQGLERNVRIANS 187

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           +ID+  R G+++ A ++   M  +   + W +++
Sbjct: 188 LIDMYARCGQVELARQVFSGMR-KRTVVSWNSMI 220



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +++  L+R+  IA  LI   A C Q+ LA +VF+ ++   V  +N++I     N   A A
Sbjct: 173 VVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADA 232

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFV 152
              F  M+ +G   D  T+  +L AC+       G  ++ L++  + +  +  ++G    
Sbjct: 233 VEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYG---- 288

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              ++D   + G +  ++     M M   ++V   +++AG    G++  A +L   + E 
Sbjct: 289 --CVVDLLGRSGQLEEAMRVVTTMPMRPNEVV-LGALLAGCRMHGDVGMAEQLMQHLLEL 345

Query: 213 D 213
           D
Sbjct: 346 D 346


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 303/568 (53%), Gaps = 27/568 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   +Q+ +  ++     D +I   LI   + C  +  A +VF+ +  PDV  Y +LI A
Sbjct: 57  LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 116

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA-LIYKCGYFG 148
             +N     A    + M ++G+  +  T   +L AC       L Q IH  LI K G   
Sbjct: 117 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRS 172

Query: 149 -DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             ++   +LID YS+ G     LAK +F S+  +++VSW SM+   ++ G L EA ++F 
Sbjct: 173 QSVYSSTALIDFYSRNG--EFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFG 230

Query: 208 EM------PERDAVSWNTILDGYAKAGEMNLAFELF-EKIPH---RNIVSWSTMVWGYSK 257
           +M      P   A+S   I+ G    G + L  +L    I H    +I   + ++  Y +
Sbjct: 231 DMISEGVDPNEFALS---IVLG--ACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR 285

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +E  + + +++    LV WT  IS   + G  ++A  L  QM   G  P+     S+
Sbjct: 286 TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 345

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKK 375
           L++CA+   L  GM+ H      +  C++ +C  NAL++MY+KCG + +A   F+ M   
Sbjct: 346 LSSCADVASLDQGMQFHCL--ALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH 403

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+ SWN++++G A HG   KAL +FS+M+  G  PD  TF+GVL  C H+G +++G  +F
Sbjct: 404 DVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFF 463

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   Y   P   HY CMID+LGR+GR  EALR++  MP EP+A+IW TLL +C+ H  
Sbjct: 464 RLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRN 523

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +++ +   D L+ L   D  +Y ++SNI+A  G+W     VR +M +T  +K +G S +E
Sbjct: 524 LDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIE 583

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           ++NEVH F+  D  HP S+ IYQM+  L
Sbjct: 584 INNEVHTFASRDMSHPNSDSIYQMLGEL 611



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 218/448 (48%), Gaps = 14/448 (3%)

Query: 79  DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           +V  + +++    +N     A  +F DM E GV  ++F     L AC         + +H
Sbjct: 5   NVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVH 64

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           +L  + G+ GD ++ + LI+ YS+CG   +  AK++F  M   D+V + S+I+   + GE
Sbjct: 65  SLAVRAGFAGDAWIGSCLIEMYSRCG--SLPAAKEVFDRMDSPDVVGYTSLISAFCRNGE 122

Query: 199 LSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR--NIVSWSTMV 252
              A     +M ++    +  +  TIL    +     +   L +KI  R  ++ S + ++
Sbjct: 123 FELAAEALIQMLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQSVYSSTALI 182

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             YS++G+ ++AK +FD +  K +V W  ++  Y   G  +EA +++  M   G+ P++ 
Sbjct: 183 DFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEF 242

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            L  +L AC   G +GLG ++H S  K+    +  V NAL+ MY + G ++   ++ N +
Sbjct: 243 ALSIVLGAC---GSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKI 299

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
              DLVSW   +     +G GEKA+ L  +M  EGF P+ Y F  VL +C     +D+G+
Sbjct: 300 ENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGM 359

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           Q F+ +    G   ++     +I++  + G++  A RL   +    +   W +L+    +
Sbjct: 360 Q-FHCLALKLGCDSEICTGNALINMYSKCGQMGSA-RLAFDVMHTHDVTSWNSLIHGHAQ 417

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTML 520
           H     A EV    +R  G  P + T L
Sbjct: 418 HGDANKALEVFS-KMRSNGIKPDDSTFL 444



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/259 (28%), Positives = 128/259 (49%), Gaps = 8/259 (3%)

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           MP K +V WT ++SGY   G  + A  ++  M E+G+ P+D    + L ACA+ G L  G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            +VH+   +  F  +  + + L++MY++CGSL  A  VF+ M   D+V + +++     +
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VE 449
           G+ E A     +M  +G  P+++T   +L AC        G Q    + +  G+  Q V 
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRSQSVY 176

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
               +ID   R+G  K A  +  S+  + N + W +++    +   +E A +V   +I  
Sbjct: 177 SSTALIDFYSRNGEFKLAKAVFDSLHCK-NVVSWCSMMQLYIRDGRLEEALQVFGDMIS- 234

Query: 510 KGSDPGNYTMLSNIFAATG 528
           +G DP  +  LS +  A G
Sbjct: 235 EGVDPNEFA-LSIVLGACG 252



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 110/288 (38%), Gaps = 67/288 (23%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+Q  Q     +KL    +      LI+  + C QMG A   F+ +   DV  +N+LI 
Sbjct: 354 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 413

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+    +A  VF  M+  G+  D+ T+  +L  CN        ++   L        
Sbjct: 414 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRL-------- 465

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                  +ID YS             F          +  MI  L + G   EA R+ ++
Sbjct: 466 -------MIDQYS-------------FTPAPSH----YACMIDMLGRNGRFDEALRMIND 501

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           MP E DA+ W T+L                    HRN                +++ KL 
Sbjct: 502 MPFEPDALIWKTLLASCKL---------------HRN----------------LDIGKLA 530

Query: 268 FDR---MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            DR   +  +    + ++ + YA  G  ++A ++  +M+E G+K D G
Sbjct: 531 ADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAG 578


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 302/572 (52%), Gaps = 10/572 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
            L + +QL A   KL    +  I   L++  A C  +  A+  F + +  +V L+N ++ 
Sbjct: 364 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 423

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A         +FR+F  MQ + +  + +TYP +LK C       L + IH+ I K  +  
Sbjct: 424 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQL 483

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + +V + LID Y+K G   +  A  + +    +D+VSW +MIAG  +     +A   F +
Sbjct: 484 NAYVCSVLIDMYAKLG--KLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 541

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS--------WSTMVWGYSKDGD 260
           M +R   S    L     A     A +  ++I  +  VS         + +V  YS+ G 
Sbjct: 542 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 601

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E + L F++  A   + W  ++SG+ + G  +EA R++ +M   G+  ++ T  S + A
Sbjct: 602 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 661

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
            +E+  +  G +VHA I K  +   T VCNAL+ MYAKCGS+ +A   F  ++ K+ VSW
Sbjct: 662 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 721

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA++   + HG G +AL  F +M      P+  T VGVL AC+H G +DKG+ YF SM  
Sbjct: 722 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 781

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +YG+ P+ EHY C++D+L R+G L  A   +Q MP++P+A++W TLL AC  H  +E+ E
Sbjct: 782 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 841

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L+ L+  D   Y +LSN++A +  W+     R +MK+   +K  G S +EV N +
Sbjct: 842 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 901

Query: 561 HEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           H F V DQ HP +++I++    L K    +G+
Sbjct: 902 HSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 933



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 135/497 (27%), Positives = 243/497 (48%), Gaps = 25/497 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L++ ++L +QI+KL L  +  ++ KL         +  A KVF+++ +  +  +N +I+
Sbjct: 60  SLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIK 119

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN-WFHLVQMIHALIYKCGYF 147
                +L  + F +F+ M  + V  +  T+  +L+AC G +  F +V+ IHA I   G  
Sbjct: 120 ELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLR 179

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               V N LID YS+ G V   LA+++F  +  +D  SW +MI+GL K    +EA RLF 
Sbjct: 180 DSTVVCNPLIDLYSRNGFV--DLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFC 237

Query: 208 EM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSK 257
           +M      P   A S  ++L    K   + +  +L   +      S     + +V  Y  
Sbjct: 238 DMYVLGIMPTPYAFS--SVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFH 295

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G++  A+ +F  M  +  V +  +I+G ++ G  ++A  L+ +M   GL+PD  TL S+
Sbjct: 296 LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASL 355

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           + AC+  G L  G ++HA   K  F  N  +  AL+++YAKC  ++ A+  F     +++
Sbjct: 356 VVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENV 415

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           V WN ML    +      +  +F +M+ E   P++YT+  +L  C   G ++ G Q    
Sbjct: 416 VLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQ 475

Query: 438 MERDYGILPQVEHYGC--MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN- 494
           + +      Q+  Y C  +ID+  + G+L  A  ++       + + W T++    ++N 
Sbjct: 476 IIKTN---FQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAGYTQYNF 531

Query: 495 ---AVELAEEVLDCLIR 508
              A+    ++LD  IR
Sbjct: 532 DDKALTTFRQMLDRGIR 548



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 125/512 (24%), Positives = 234/512 (45%), Gaps = 17/512 (3%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K ++L   +QL   ++KL    D Y+   L+S       +  A  +F+++   D   YNT
Sbjct: 260 KIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNT 319

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI    Q     +A  +F  M   G+  D+ T   L+ AC+        Q +HA   K G
Sbjct: 320 LINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLG 379

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  +  +  +L++ Y+KC  +  +L    F+     ++V WN M+       +L  + R+
Sbjct: 380 FASNNKIEGALLNLYAKCADIETAL--DYFLETEVENVVLWNVMLVAYGLLDDLRNSFRI 437

Query: 206 FDEMPERDAV----SWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSK 257
           F +M   + V    ++ +IL    + G++ L  ++  +I   N        S ++  Y+K
Sbjct: 438 FRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAK 497

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A  +  R   K +V WT +I+GY +     +A   + QM + G++ D+  L + 
Sbjct: 498 LGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNA 557

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ++ACA    L  G ++HA      F  +    NALV +Y++CG ++ +   F      D 
Sbjct: 558 VSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDN 617

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++WNA++ G    G  E+AL +F RM  EG   + +TF   + A +    + +G Q  ++
Sbjct: 618 IAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQ-VHA 676

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           +    G   + E    +I +  + G + +A +    +  + N + W  ++ A  KH    
Sbjct: 677 VITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTK-NEVSWNAIINAYSKHG--- 732

Query: 498 LAEEVLDCLIRLKGSD--PGNYTMLSNIFAAT 527
              E LD   ++  S+  P + T++  + A +
Sbjct: 733 FGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 764



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 198/396 (50%), Gaps = 18/396 (4%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYFGDIFVPNSLIDSY-SKC 163
           ++ +G+  ++ T  +LL+ C   N      + +H+ I K G   +  +   L D Y  K 
Sbjct: 35  VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94

Query: 164 GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDG 223
            + G   A K+F  M ER I +WN MI  L     + E   LF  M   +         G
Sbjct: 95  DLYG---AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSG 151

Query: 224 YAKAGEM-NLAFELFEKIPHR--------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
             +A    ++AF++ E+I  R        + V  + ++  YS++G +++A+ +FD +  K
Sbjct: 152 VLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLK 211

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
               W  +ISG ++     EA RL+  M   G+ P      S+L+AC +   L +G ++H
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 271

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
             + K  F  +T VCNALV +Y   G+L +A  +F+ M+++D V++N ++ GL+  G GE
Sbjct: 272 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 331

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGC 453
           KA+ LF RM  +G  PD  T   ++ AC+  G + +G Q + Y+ +  +    ++E  G 
Sbjct: 332 KAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GA 389

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +++L  +   ++ AL       VE N ++W  +L A
Sbjct: 390 LLNLYAKCADIETALDYFLETEVE-NVVLWNVMLVA 424


>gi|226496045|ref|NP_001146017.1| uncharacterized protein LOC100279548 [Zea mays]
 gi|219885333|gb|ACL53041.1| unknown [Zea mays]
 gi|414872421|tpg|DAA50978.1| TPA: hypothetical protein ZEAMMB73_118572 [Zea mays]
          Length = 528

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/391 (41%), Positives = 240/391 (61%), Gaps = 2/391 (0%)

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           +  A+ +F +M  RD+VSWNSM+AGL K G L EA  +FD+MPE +  SWN ++ G+   
Sbjct: 137 IPAARAMFEAMPARDVVSWNSMVAGLAKAGHLDEAIEMFDQMPETNVASWNALVSGFMAQ 196

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           G +  A ELFE++P RN VSW TM+ GY+K GD++ A  LFDRM +K L  W  +IS YA
Sbjct: 197 GHLAQAQELFERMPTRNNVSWITMISGYAKAGDVQAAANLFDRMGSKDLYAWNAMISCYA 256

Query: 288 EKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           + G A+EA  ++++M +  +   P++ T  S+++AC++ G L  G+ V   +       +
Sbjct: 257 QNGCAREALGIFNRMLKPHIWVVPNEKTFSSVISACSQLGDLRFGLWVENFMGYVGVDLD 316

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
            ++  ALVD+Y K G +D A  +F G+  +D+VS++AM+ G  MHG+  +A+GLF  M  
Sbjct: 317 DHLRTALVDLYTKSGRMDRAFDLFRGLRSRDVVSYSAMIVGCGMHGKLNEAVGLFKEMSK 376

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
               P+  TFVG+L A +HAG +++    F SM   Y I P +EHY  M+D+LGR G+L+
Sbjct: 377 ARIDPNAVTFVGLLSAYSHAGLLEEARACFTSMTSRYRINPSMEHYTIMVDILGRCGKLE 436

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           EA +LV  +PV P+A +WG LL ACR HN +EL E V      L+  + G Y +L NI+A
Sbjct: 437 EAFQLVMQIPVCPDASVWGALLLACRLHNNIELGEVVASKCFELEPQESGYYILLGNIYA 496

Query: 526 ATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
               W+KV  +R  M +    K  G+S V V
Sbjct: 497 QAKKWDKVKGLRKMMAERGLSKTPGSSWVHV 527


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/531 (35%), Positives = 297/531 (55%), Gaps = 48/531 (9%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFG--DIFVPNSLIDSYSKCGVVGVSLAKKLF 175
           Y FLL++C  ++   + + +HA I   G  G  + F+ N+L+  Y+ CG      A+K+F
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAW--QARKVF 73

Query: 176 --MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM------PER--------------D 213
             +    +D V W +++   V+     EA  +F EM      P+               D
Sbjct: 74  DEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGD 133

Query: 214 AV-------------------SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
            V                   + N ++D YAK+G M  A  +F ++  +++VSW+ ++ G
Sbjct: 134 VVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDG 193

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGT 313
             +   +   +++FD MP +  V WTI+I+GY + G+ +E+  L  +M  +  ++ +  T
Sbjct: 194 VIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVT 253

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFK-CNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           L SIL AC++SG L +G  VHA   K + K  N  V  A+VDMYAKCG +  A   F  M
Sbjct: 254 LCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKM 313

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            ++++VSWNAML GLAMHG G  AL +F +M  E   PD  TF  VL AC+H+G +D+G 
Sbjct: 314 PQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQGC 372

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
            YF ++E  YGI P+VEHY CM+DLLGR+GRL+EA  LV+ MP+ PN ++ G+LLG+C  
Sbjct: 373 FYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSI 432

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  ++L E +L  L++L   +   + +LSN++A  G  N+  ++R  +KK   +K  G S
Sbjct: 433 HGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMS 492

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIGEG 603
           S+ V  +VH+FS  D+ HP++ ++Y M++ +   L+  G+A   + +   G
Sbjct: 493 SIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAG 543


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 296/610 (48%), Gaps = 81/610 (13%)

Query: 28  KNLNQTKQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           K+L Q + L A I++  L + D  +   LI+  A CR + LA K F+++    +  +N L
Sbjct: 72  KDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNAL 131

Query: 87  IRACVQNSLNAQAFRVFLDMQEK---GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           I    +N  +  A +++ DM  K   G+  D  T+   L AC         + I A    
Sbjct: 132 IAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVA 191

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            GY  D  V N+LI+ YSKCG                                  L  AR
Sbjct: 192 SGYASDSIVQNALINMYSKCG---------------------------------SLESAR 218

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMVW------ 253
           ++FD +  RD ++WNT++ GYAK G    A ELF+++    P  N+V++  ++       
Sbjct: 219 KVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE 278

Query: 254 ---------------GYSKD---------------GDMEMAKLLFDRMPAKTLVPWTIII 283
                          GY  D                 +E A+ +F+RM  + ++ W I+I
Sbjct: 279 DLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILI 338

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
             Y + G AK+A  ++ QM+   + P++ TL ++L+ACA  G    G  VHA I   R K
Sbjct: 339 VAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCK 398

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  + N+L++MY +CGSLD+ + VF  +  K LVSW+ ++   A HG     L  F  +
Sbjct: 399 ADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWEL 458

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
             EG   D  T V  L AC+H G + +GVQ F SM  D+G+ P   H+ CM+DLL R+GR
Sbjct: 459 LQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGR 518

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP-GNYTMLSN 522
           L+ A  L+  MP  P+A+ W +LL  C+ HN  + A  V D L  L+  D     T+LSN
Sbjct: 519 LEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSN 578

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
           ++A  G W+ V   R    +  A+K  G S +E+++ VHEF   D+ HP+ E I   I  
Sbjct: 579 VYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKR 635

Query: 583 LGKDLKPVGH 592
           L K +K  G+
Sbjct: 636 LSKQMKDAGY 645



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G +  A  +F  +     V WT+I++ +A  G  +EA   Y +M   GL+PD    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 315 ISILAACAESGLLGLGMKVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           +  +  C+ S  L  G  +HA I + R  + +  +  AL+ MYA+C  L+ A   F+ M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRM---KDEGFGPDKYTFVGVLCACTHAGFIDK 430
           KK LV+WNA++ G + +G    AL ++  M     EG  PD  TF   L ACT  G I +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 431 GVQY-FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           G +    ++   Y     V++   +I++  + G L+ A ++   +    + I W T++  
Sbjct: 182 GREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMISG 238

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548
             K  A   A + L+   R+  +DP  N      +  A  +   +   R   +K R  + 
Sbjct: 239 YAKQGA---ATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVR--ED 293

Query: 549 SGASSVEVDNE-VHEFSVCDQLHPKSEQIYQMINT 582
              S + + N  ++ ++ C     ++ Q+++ + T
Sbjct: 294 GYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRT 328



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCGS+ +A++VF+ +   + VSW  ++   A +G   +ALG + RM  EG  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 415 FVGVLCACTHAGFIDKGVQYFYSM 438
           FV  +  C+ +  + +G Q  ++M
Sbjct: 61  FVVAIGVCSSSKDLKQG-QLLHAM 83


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 180/580 (31%), Positives = 298/580 (51%), Gaps = 60/580 (10%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  +   LI  LA    +  A KVF+ + +  V ++  LI   VQ     +A  +FLD  
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFL 246

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           E G   D +T   ++ AC       L   +H+L  + G   D  V   L+D Y+K  +  
Sbjct: 247 EDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNI-- 304

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
                                       G  +  A ++F+ MP+ D +SW  ++ GY ++
Sbjct: 305 ----------------------------GQAMDYANKVFERMPKNDVISWTALISGYVQS 336

Query: 228 G-EMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRM----PAKTLVP 278
           G + N    LF ++ + +I    +++S+++   +   D +  + +   +     A     
Sbjct: 337 GVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTV 396

Query: 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKP---------------------DDGTLISI 317
              ++S YAE G  +EA R+++Q+ E  + P                        T  S+
Sbjct: 397 GNALVSMYAESGCMEEARRVFNQLYERSMIPCITEGRDFPLDHRIVRMDVGISSSTFASL 456

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           ++A A  G+L  G ++HA   K  F  +  V N+LV MY++CG L++A   FN +  +++
Sbjct: 457 ISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNV 516

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           +SW +M+ GLA HG  E+AL LF  M   G  P+  T++ VL AC+H G + +G +YF S
Sbjct: 517 ISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRS 576

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           M+RD+G++P++EHY CM+DLL RSG +KEAL  +  MP++ +A++W TLLGACR H+ +E
Sbjct: 577 MQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIE 636

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           + E     ++ L+  DP  Y +LSN++A  G W++VA +R  M+     K +G S +EV+
Sbjct: 637 VGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVE 696

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           N  HEF   D  HP+++ IY  ++TL + +K +G+    S
Sbjct: 697 NTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTS 736



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 169/345 (48%), Gaps = 26/345 (7%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSM-GERDIVSWNSMIAGLVKGGELSEARRLFD 207
           D  V NSL+  YS+CG V    A+ +F  M G RDIVSW +M + L + G    +  L  
Sbjct: 83  DAVVANSLLTLYSRCGAVAS--ARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIG 140

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELF-------EKIPHR------NIVSWSTMVWG 254
           EM E   +     L   A A       EL+         + H+      ++   S ++  
Sbjct: 141 EMLESGLLPNAYTLCAAAHAC---FPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDM 197

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
            +++GD+  A+ +FD +  KT+V WT++IS Y +   A+EA  L+    E G +PD  T+
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTM 257

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG---SLDNAMSVFNG 371
            S+++AC E G + LG+++H+   +     +  V   LVDMYAK     ++D A  VF  
Sbjct: 258 SSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFER 317

Query: 372 MTKKDLVSWNAMLYGLAMHG-QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
           M K D++SW A++ G    G Q  K + LF  M +E   P+  T+  +L +C      D 
Sbjct: 318 MPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDS 377

Query: 431 GVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           G Q + + ++ +      V +   ++ +   SG ++EA R+   +
Sbjct: 378 GRQVHAHVIKSNQASAHTVGN--ALVSMYAESGCMEEARRVFNQL 420



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 123/251 (49%), Gaps = 8/251 (3%)

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQ 301
           R+ V  ++++  YS+ G +  A+ +FD M   + +V WT + S  A  G  + +  L  +
Sbjct: 82  RDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGE 141

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKC 359
           M E+GL P+  TL +   AC    L  L   V   +        T+V   +AL+DM A+ 
Sbjct: 142 MLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARN 201

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L +A  VF+G+ +K +V W  ++         E+A+ LF    ++GF PD+YT   ++
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMI 261

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG---RLKEALRLVQSMPV 476
            ACT  G +  G+Q  +S+    G+         ++D+  +S     +  A ++ + MP 
Sbjct: 262 SACTELGSVRLGLQ-LHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMP- 319

Query: 477 EPNAIIWGTLL 487
           + + I W  L+
Sbjct: 320 KNDVISWTALI 330



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 105/204 (51%), Gaps = 24/204 (11%)

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406
           V N+L+ +Y++CG++ +A +VF+GM   +D+VSW AM   LA +G    +L L   M + 
Sbjct: 86  VANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLES 145

Query: 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-------CMIDLLG 459
           G  P+ YT    LCA  HA F  +   Y        G++ ++  +G        +ID+L 
Sbjct: 146 GLLPNAYT----LCAAAHACFPHE--LYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLA 199

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNY 517
           R+G L  A ++   + +E   ++W  L+    ++   E AEE ++  +     G +P  Y
Sbjct: 200 RNGDLASARKVFDGL-IEKTVVVWTLLIS---RYVQGECAEEAVELFLDFLEDGFEPDRY 255

Query: 518 TMLSNIFAATGDWNKVANVRLQMK 541
           TM S I A T    ++ +VRL ++
Sbjct: 256 TMSSMISACT----ELGSVRLGLQ 275



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 114/291 (39%), Gaps = 75/291 (25%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L + +QL A  +K     D +++  L+S  + C  +  A + FN+++D +V  + ++I  
Sbjct: 466 LTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISG 525

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
             ++    +A  +F DM   GV  ++ TY  +L AC+       GK +F  +Q  H LI 
Sbjct: 526 LAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIP 585

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           +  ++                                         M+  L + G + EA
Sbjct: 586 RMEHYA---------------------------------------CMVDLLARSGIVKEA 606

Query: 203 RRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
               +EMP + DA+ W T+L        + +      +I  +N+V               
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVG-----EITAKNVVE-------------- 647

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
                L  R PA    P+ ++ + YA+ G+  E AR+   M +  L  + G
Sbjct: 648 -----LEPRDPA----PYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETG 689


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 303/568 (53%), Gaps = 27/568 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   +Q+ +  ++     D +I   LI   + C  +  A +VF+ +  PDV  Y +LI A
Sbjct: 130 LRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISA 189

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA-LIYKCGYFG 148
             +N     A    + M ++G+  +  T   +L AC       L Q IH  LI K G   
Sbjct: 190 FCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHGYLIKKIGLRS 245

Query: 149 -DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             ++   +LID YS+ G     LAK +F S+  +++VSW SM+   ++ G L EA ++F 
Sbjct: 246 QSVYSSTALIDFYSRNG--EFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFG 303

Query: 208 EM------PERDAVSWNTILDGYAKAGEMNLAFELF-EKIPH---RNIVSWSTMVWGYSK 257
           +M      P   A+S   I+ G    G + L  +L    I H    +I   + ++  Y +
Sbjct: 304 DMISEGVDPNEFALS---IVLG--ACGSIGLGRQLHCSAIKHDLITDIRVSNALLSMYGR 358

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G +E  + + +++    LV WT  IS   + G  ++A  L  QM   G  P+     S+
Sbjct: 359 TGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSV 418

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVC--NALVDMYAKCGSLDNAMSVFNGMTKK 375
           L++CA+   L  GM+ H      +  C++ +C  NAL++MY+KCG + +A   F+ M   
Sbjct: 419 LSSCADVASLDQGMQFHCL--ALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTH 476

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           D+ SWN++++G A HG   KAL +FS+M+  G  PD  TF+GVL  C H+G +++G  +F
Sbjct: 477 DVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFF 536

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
             M   Y   P   HY CMID+LGR+GR  EALR++  MP EP+A+IW TLL +C+ H  
Sbjct: 537 RLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRN 596

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +++ +   D L+ L   D  +Y ++SNI+A  G+W     VR +M +T  +K +G S +E
Sbjct: 597 LDIGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIE 656

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           ++NEVH F+  D  HP S+ IYQM+  L
Sbjct: 657 INNEVHTFASRDMSHPNSDSIYQMLGEL 684



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/479 (26%), Positives = 232/479 (48%), Gaps = 14/479 (2%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D  +  K ++ L    ++  A+ +F+ +   +V  + +++    +N     A  +F DM 
Sbjct: 47  DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMV 106

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
           E GV  ++F     L AC         + +H+L  + G+ GD ++ + LI+ YS+CG   
Sbjct: 107 ESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCG--S 164

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDG 223
           +  AK++F  M   D+V + S+I+   + GE   A     +M ++    +  +  TIL  
Sbjct: 165 LPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTA 224

Query: 224 YAKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
             +     +   L +KI  R  ++ S + ++  YS++G+ ++AK +FD +  K +V W  
Sbjct: 225 CPRVLGQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCS 284

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           ++  Y   G  +EA +++  M   G+ P++  L  +L AC   G +GLG ++H S  K+ 
Sbjct: 285 MMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC---GSIGLGRQLHCSAIKHD 341

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
              +  V NAL+ MY + G ++   ++ N +   DLVSW   +     +G GEKA+ L  
Sbjct: 342 LITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLC 401

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
           +M  EGF P+ Y F  VL +C     +D+G+Q F+ +    G   ++     +I++  + 
Sbjct: 402 QMHSEGFTPNGYAFSSVLSSCADVASLDQGMQ-FHCLALKLGCDSEICTGNALINMYSKC 460

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
           G++  A RL   +    +   W +L+    +H     A EV    +R  G  P + T L
Sbjct: 461 GQMGSA-RLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFS-KMRSNGIKPDDSTFL 517



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 136/273 (49%), Gaps = 8/273 (2%)

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           K G +  A  LFDRMP K +V WT ++SGY   G  + A  ++  M E+G+ P+D    +
Sbjct: 60  KSGRLADALDLFDRMPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNA 119

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
            L ACA+ G L  G +VH+   +  F  +  + + L++MY++CGSL  A  VF+ M   D
Sbjct: 120 ALVACADLGALRAGEQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPD 179

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +V + +++     +G+ E A     +M  +G  P+++T   +L AC        G Q   
Sbjct: 180 VVGYTSLISAFCRNGEFELAAEALIQMLKQGLKPNEHTMTTILTACPRV----LGQQIHG 235

Query: 437 SMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            + +  G+  Q V     +ID   R+G  K A  +  S+  + N + W +++    +   
Sbjct: 236 YLIKKIGLRSQSVYSSTALIDFYSRNGEFKLAKAVFDSLHCK-NVVSWCSMMQLYIRDGR 294

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +E A +V   +I  +G DP  +  LS +  A G
Sbjct: 295 LEEALQVFGDMIS-EGVDPNEFA-LSIVLGACG 325



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 113/288 (39%), Gaps = 67/288 (23%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L+Q  Q     +KL    +      LI+  + C QMG A   F+ +   DV  +N+LI 
Sbjct: 427 SLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIH 486

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              Q+    +A  VF  M+  G+  D+ T+  +L  CN         M+          G
Sbjct: 487 GHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSG------MVEE--------G 532

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           ++F    +ID YS             F          +  MI  L + G   EA R+ ++
Sbjct: 533 ELFF-RLMIDQYS-------------FTPAPSH----YACMIDMLGRNGRFDEALRMIND 574

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
           MP E DA+ W T+L                    HRN                +++ KL 
Sbjct: 575 MPFEPDALIWKTLLASCKL---------------HRN----------------LDIGKLA 603

Query: 268 FDR---MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            DR   +  +    + ++ + YA  G  ++A ++  +M+E G+K D G
Sbjct: 604 ADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAG 651


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 191/641 (29%), Positives = 327/641 (51%), Gaps = 74/641 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   ++LF +I     +R+ +    L+S  A   ++  A  VF ++ + D   +  ++  
Sbjct: 81  LRDARRLFDEIPLA--RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             +     +A +  LDM   G     FT   +L +C       + + +H+ + K G    
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 150 IFVPNSLIDSYSKCG-------------VVGVS----------------LAKKLFMSMGE 180
           + V NS+++ Y KCG             V  VS                LA+ LF SM +
Sbjct: 199 VPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPD 258

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM-------PE---------------------- 211
           R IVSWN+MIAG  + G  ++A +LF  M       P+                      
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 212 ------RDAVSWNT-----ILDGYAKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKD 258
                 R  +++N+     ++  YAK+G +  A  + ++      N++S++ ++ GY K 
Sbjct: 319 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GDME A+ +F  M  + +V WT +I GY + G   EA  L+  M   G +P+  TL ++L
Sbjct: 379 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 438

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           + CA    L  G ++H    +   + +++V NA++ MYA+ GS   A  +F+ +  +K+ 
Sbjct: 439 SVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 498

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++W +M+  LA HGQGE+A+GLF  M   G  PD+ T+VGVL AC+HAGF+++G +Y+  
Sbjct: 499 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           ++ ++ I P++ HY CM+DLL R+G   EA   ++ MPVEP+AI WG+LL ACR H   E
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           LAE   + L+ +  ++ G Y+ ++N+++A G W+  A +    K+   +K +G S   + 
Sbjct: 619 LAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIR 678

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           +++H F   D +HP+ + +Y M   + +++K  G    L +
Sbjct: 679 SKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQS 719



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 154/326 (47%), Gaps = 42/326 (12%)

Query: 218 NTILDGYAK----AGEMNLAFELFEKIP--HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           N +L  Y +    AG +  A  LF++IP   RN+ +W++++  ++K G +  A+ +F  M
Sbjct: 65  NNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM 124

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P +  V WT+++ G    G   EA +    M   G  P   TL ++L++CA +    +G 
Sbjct: 125 PERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGR 184

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGS------------------------------ 361
           KVH+ + K        V N++++MY KCG                               
Sbjct: 185 KVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLG 244

Query: 362 -LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVL 419
            +D A S+F  M  + +VSWNAM+ G   +G   KAL LFSRM  E    PD++T   VL
Sbjct: 245 RMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 304

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV-QSMPVE 477
            AC + G +  G Q + Y +  +     QV +   +I    +SG ++ A R++ QSM  +
Sbjct: 305 SACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMETD 362

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVL 503
            N I +  LL    K   +E A E+ 
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMF 388



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 43/229 (18%)

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV----------------------- 353
           +L  C  +   G G  +HA   K     +  +CN L+                       
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 354 --------------DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                          M+AK G L +A  VF  M ++D VSW  M+ GL   G+  +A+  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 400 FSRMKDEGFGPDKYTFVGVL--CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
              M  +GF P ++T   VL  CA T AG + + V  F       G+   V     ++++
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVV---KLGLGSCVPVANSVLNM 208

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            G+ G  + A  + + MPV  +   W  ++        ++LAE + + +
Sbjct: 209 YGKCGDSETATTVFERMPVR-SVSSWNAMVSLNTHLGRMDLAESLFESM 256


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 187/572 (32%), Positives = 316/572 (55%), Gaps = 13/572 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+ + ++K+  + + +    L+   A C ++  A +VF  I   +   +N LI    Q 
Sbjct: 120 QQVHSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQV 179

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
                AF +   M+ +GV  D+ T+  LL   +  +   L   +HA I K G   D  V 
Sbjct: 180 GDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVC 239

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLVKGGELSEARRLFDEMP-- 210
           N++I +YS+CG   +  A+++F    E RD+V+WNSM+A  +   +  EA +LF EM   
Sbjct: 240 NAIITAYSECG--SIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVL 297

Query: 211 --ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-----VSWSTM-VWGYSKDGDME 262
             E D  ++ +++    +         L   +  R +     +S S + ++  S    M+
Sbjct: 298 GFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMD 357

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A  +F+ +  K  V W  I++G+++ G++++A + ++ M    +  D     ++L +C+
Sbjct: 358 EALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCS 417

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           +   L LG +VH  + K  F+ N  V ++L+ MY+KCG +++A   F+   K   ++WN+
Sbjct: 418 DLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNS 477

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           +++G A HG+G+ AL LF  MKD     D  TFV VL AC+H G +++G  +  SME DY
Sbjct: 478 LIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDY 537

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           GI P++EHY CMIDLLGR+GRL EA  L+++MP EP+A++W TLLGACR    +ELA +V
Sbjct: 538 GIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQV 597

Query: 503 LDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHE 562
              L+ L+  +   Y +LS++F     WN+ A+++  MK+   +K  G S +EV NEV  
Sbjct: 598 ASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRS 657

Query: 563 FSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
           F+  D+ HP  E+IY  +  L ++++ + + A
Sbjct: 658 FNAEDRSHPNCEEIYLRLGELMEEIRRLDYVA 689



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 228/481 (47%), Gaps = 18/481 (3%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           IK       Y A  +IS  A C ++ +A K+F +    D   +NT+I   V       A 
Sbjct: 26  IKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETAL 85

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
                M+  G   D +++  +LK      +  + Q +H+++ K GY G++F  ++L+D Y
Sbjct: 86  EFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMY 145

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVS 216
           +KC    V  A ++F S+  R+ V+WN++I+G  + G+   A  L D M     E D  +
Sbjct: 146 AKCE--RVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGT 203

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST----MVWGYSKDGDMEMAKLLFD-RM 271
           +  +L          L  ++  KI    + S +T    ++  YS+ G +E A+ +FD  +
Sbjct: 204 FAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAI 263

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             + LV W  +++ Y      +EA +L+ +M+  G +PD  T  S+++A  E    G G 
Sbjct: 264 ETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGK 323

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAK--CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
            +H  + K   +    + N+L+ MY K    S+D A+++F  +  KD VSWN++L G + 
Sbjct: 324 SLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQ 383

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
            G  E AL  F  M+ +    D Y F  VL +C+    +  G Q  + +    G  P   
Sbjct: 384 SGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLG-QQVHVLVLKSGFEPNGF 442

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
               +I +  + G +++A +   + P + ++I W +L+    +H   ++A   LD    +
Sbjct: 443 VASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSLIFGYAQHGRGKIA---LDLFFLM 498

Query: 510 K 510
           K
Sbjct: 499 K 499



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 126/431 (29%), Positives = 206/431 (47%), Gaps = 47/431 (10%)

Query: 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG 197
           H L  K G    I+  N++I  Y+KCG   + +A K+F    +RD VSWN+MIAG V  G
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCG--EIRIASKMFGETSQRDAVSWNTMIAGFVNLG 79

Query: 198 ELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWS 249
               A      M       D  S+ +IL G A  G + +  ++   +       N+ + S
Sbjct: 80  NFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGS 139

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
            ++  Y+K   +E A  +F  +  +  V W  +ISGYA+ G    A  L D ME  G++ 
Sbjct: 140 ALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEI 199

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           DDGT   +L    +  L  L  +VHA I K+    +T VCNA++  Y++CGS+++A  VF
Sbjct: 200 DDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVF 259

Query: 370 NG-MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC---THA 425
           +G +  +DLV+WN+ML    ++ Q E+A  LF  M+  GF PD YT+  V+ A    +H 
Sbjct: 260 DGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQ 319

Query: 426 G--------FIDKGVQYFY----------------SMERDYGILPQVEH-----YGCMID 456
           G         I +G+++                  SM+    I   +E+     +  ++ 
Sbjct: 320 GQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILT 379

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAI---IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
              +SG  ++AL+  ++M  +   I    +  +L +C     ++L ++V   L+   G +
Sbjct: 380 GFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQV-HVLVLKSGFE 438

Query: 514 PGNYTMLSNIF 524
           P  +   S IF
Sbjct: 439 PNGFVASSLIF 449



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 178/363 (49%), Gaps = 11/363 (3%)

Query: 33  TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND-IQDPDVHLYNTLIRACV 91
           T Q+ A+I+K  L  D  +   +I++ + C  +  A +VF+  I+  D+  +N+++ A +
Sbjct: 220 TTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYL 279

Query: 92  QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF 151
            N+   +AF++FL+MQ  G   D +TY  ++ A    +     + +H L+ K G    + 
Sbjct: 280 VNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIKRGLEFLVP 339

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE 211
           + NSLI  Y K     +  A  +F S+  +D VSWNS++ G  + G   +A + F+ M  
Sbjct: 340 ISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRS 399

Query: 212 R----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGDMEM 263
           +    D  +++ +L   +    + L  ++   +       N    S++++ YSK G +E 
Sbjct: 400 QYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIED 459

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+  FD  P  + + W  +I GYA+ G  K A  L+  M++  +K D  T +++L AC+ 
Sbjct: 460 ARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSH 519

Query: 324 SGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWN 381
            GL+  G     S+ + Y           ++D+  + G LD A ++   M  + D + W 
Sbjct: 520 IGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWK 579

Query: 382 AML 384
            +L
Sbjct: 580 TLL 582



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 2/283 (0%)

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
           +I + + ++ GY+K G++ +A  +F     +  V W  +I+G+   G  + A      M+
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
             G   D  +  SIL   A  G + +G +VH+ + K  ++ N    +AL+DMYAKC  ++
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
           +A  VF  +  ++ V+WNA++ G A  G    A  L   M+ EG   D  TF  +L    
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
                    Q    + + +G+         +I      G +++A R+        + + W
Sbjct: 213 DPDLHKLTTQVHAKIVK-HGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTW 271

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
            ++L A   +N  E A ++    +++ G +P  YT  S I AA
Sbjct: 272 NSMLAAYLVNNQEEEAFQLF-LEMQVLGFEPDIYTYTSVISAA 313


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 185/577 (32%), Positives = 304/577 (52%), Gaps = 12/577 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++   ++K     D +    L +  A CRQ+  A KVF+ + + D+  +NT++    QN
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQN 214

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            +   A  +   M E+ +     T   +L A +      + + IH    + G+   + + 
Sbjct: 215 GMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIA 274

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRLFDEM 209
            +L+D Y+KCG   +  A+ LF  M ER++VSWNSMI   V+     EA    +++ DE 
Sbjct: 275 TALVDMYAKCG--SLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGDMEMA 264
            +   VS    L   A  G++        K+       RN+   ++++  Y K  +++ A
Sbjct: 333 VKPTDVSVMGALHACADLGDLERG-RFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F ++ ++T+V W  +I G+A+ G   EA   + QM+   +KPD  T +S++ A AE 
Sbjct: 392 ASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAEL 451

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
            +      +H  + +     N  V  ALVDMYAKCG++  A  +F+ M+++ + +WNAM+
Sbjct: 452 SITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G   HG G+ AL LF  M+     P+  TF+ V+ AC+H+G ++ G++ F+ M+ +Y I
Sbjct: 512 DGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSI 571

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P ++HYG M+DLLGR+GRL EA   +  MPV+P   ++G +LGAC+ H  V  AE+V +
Sbjct: 572 EPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAE 631

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L  L   D G + +L+NI+ A   W KV  VR+ M +   +K  G S VE+ NEVH F 
Sbjct: 632 RLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIG 601
                HP S++IY  +  L   +K  G+    +  +G
Sbjct: 692 SGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILG 728



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/516 (27%), Positives = 251/516 (48%), Gaps = 21/516 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L +C +L + + +   I K  L ++     KL+S       +  A +VF  I      LY
Sbjct: 44  LERCSSLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLY 103

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
            T+++   + S   +A + F+ M++  V    + + +LLK C  +    + + IH L+ K
Sbjct: 104 YTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVK 163

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G+  D+F    L + Y+KC    V  A+K+F  M ERD+VSWN+++AG  + G    A 
Sbjct: 164 SGFSLDLFAMTGLENMYAKCR--QVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMAL 221

Query: 204 RLFDEMPERDA----VSWNTILDGYAKAGEMNLAFELF---EKIPHRNIVSWST-MVWGY 255
            + + M E +     ++  ++L   +    + +  E+     +    ++V+ +T +V  Y
Sbjct: 222 EMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMY 281

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           +K G ++ A+LLFD M  + +V W  +I  Y +    KEA  ++ +M + G+KP D +++
Sbjct: 282 AKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVM 341

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L ACA+ G L  G  +H    +     N +V N+L+ MY KC  +D A S+F  +  +
Sbjct: 342 GALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSR 401

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
            +VSWNAM+ G A +G+  +AL  FS+M+     PD +T+V V+ A      I    ++ 
Sbjct: 402 TIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELS-ITHHAKWI 460

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN- 494
           + +     +   V     ++D+  + G +  A RL+  M  E +   W  ++     H  
Sbjct: 461 HGVVMRNCLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHGI 519

Query: 495 ---AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
              A+EL EE+    IR     P   T LS I A +
Sbjct: 520 GKAALELFEEMQKGTIR-----PNGVTFLSVISACS 550


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 196/583 (33%), Positives = 317/583 (54%), Gaps = 21/583 (3%)

Query: 36  LFAQIIKL--DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           L+  ++KL  D   D ++    I   A    +  A ++F+   + +  ++NT+I   VQN
Sbjct: 240 LYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQN 299

Query: 94  SLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV 152
           +   +A  +F+ + E   F  D+ T+   L A +   W  L + +HA I K      + +
Sbjct: 300 NCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILKSSTILQVVI 359

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
            N++I  YS+CG +G S   K+F +M ERD+V+WN+M++  V+ G   E   L   M ++
Sbjct: 360 LNAIIVMYSRCGSIGTSF--KVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQ 417

Query: 213 ----DAVSWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
               D+V+   +L   +     + G+   A+ +   I    + S+  ++  Y+K G +  
Sbjct: 418 GFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSY--LIDMYAKSGLITT 475

Query: 264 AKLLFDRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           A+ LF++     +    W  +I+GY + G+++E   ++ +M E  ++P+  TL SIL AC
Sbjct: 476 AQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPAC 535

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
              G +GLG ++H    +     N  V  AL+DMY+K G++  A +VF    +K+ V++ 
Sbjct: 536 NPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYT 595

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
            M+     HG GE+AL LF  M   G  PD  TFV +L AC++AG +D+G++ F SMER+
Sbjct: 596 TMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMERE 655

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI-IWGTLLGACRKHNAVELAE 500
           Y I P  EHY C+ D+LGR GR+ EA   V+ +  E N   IWG+LLGACR H   EL +
Sbjct: 656 YKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGK 715

Query: 501 EVLDCLIRL-KGSD-PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            V + L+ + KGS   G + +LSNI+AA G+W+ V  VR +M++    K +G S VEV  
Sbjct: 716 VVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEVAG 775

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIG 601
            V+ F   D  HP+  +IYQM+  L  ++K  G+   L+ + G
Sbjct: 776 HVNCFMSRDHKHPQCAEIYQMLEKLAMEMKDAGYKPCLNLQTG 818



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 137/547 (25%), Positives = 237/547 (43%), Gaps = 73/547 (13%)

Query: 61  LCRQ--MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNFT 117
           LCRQ     A+ +F+ I  P   L+NT+I   + N++   A   +  M+       D++T
Sbjct: 47  LCRQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYT 106

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC----GVVGVS---- 169
           +   LKAC       L + +H  + +  +     V NSL++ YS C      +G +    
Sbjct: 107 FSSTLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFN 166

Query: 170 ---LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILD 222
              L +++F +M +R++V+WN+MI+  VK   L EA ++F  M         VS+  +  
Sbjct: 167 NCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFP 226

Query: 223 GYAKAGEM---NLAFELFEKIPHRNIVSW---STMVWGYSKDGDMEMAKLLFDRMPAKTL 276
              +  +    N+ + L  K+    +  +   S+ ++ Y++ G ++ A+ +FD    +  
Sbjct: 227 AVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNT 286

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQ-MEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335
             W  +I GY +     EA  L+ Q ME      DD T +S L A ++   L LG ++HA
Sbjct: 287 EVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHA 346

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEK 395
            I K        + NA++ MY++CGS+  +  VF+ M ++D+V+WN M+     +G  ++
Sbjct: 347 YILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 396 ALGLFSRMKDEGFGPDKYTFVGVLCACT-----------HAGFIDKGVQ------YFYSM 438
            L L   M+ +GF  D  T   +L   +           HA  I  G+Q      Y   M
Sbjct: 407 GLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEGMDSYLIDM 466

Query: 439 ERDYGILPQVEH--------------YGCMIDLLGRSGRLKEALRLVQSM---PVEPNAI 481
               G++   +               +  MI    ++G  +E   + + M    V PNA+
Sbjct: 467 YAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAV 526

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRL--------------KGSDPGNYTMLSNIFAAT 527
              ++L AC     + L +++    IR                 S  G  T   N+FA T
Sbjct: 527 TLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAITYAENVFAET 586

Query: 528 GDWNKVA 534
            + N V 
Sbjct: 587 LEKNSVT 593



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 189/376 (50%), Gaps = 20/376 (5%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +QL A I+K        I   +I   + C  +G + KVF+++ + DV  +NT++ A VQN
Sbjct: 342 RQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQN 401

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG--YFGDIF 151
            L+ +   +   MQ++G   D+ T   LL   +      + +  HA + + G  + G   
Sbjct: 402 GLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIGKQAHAYLIRHGIQFEG--- 458

Query: 152 VPNSLIDSYSKCGVVGVSLAKKLFM--SMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + + LID Y+K G+  ++ A++LF   S  +RD  +WN+MIAG  + G   E   +F +M
Sbjct: 459 MDSYLIDMYAKSGL--ITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKM 516

Query: 210 PER----DAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDM 261
            E+    +AV+  +IL      G + L  ++         +RN+   + ++  YSK G +
Sbjct: 517 IEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVFVGTALLDMYSKSGAI 576

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A+ +F     K  V +T +IS Y + GM + A  L+  M  +G+KPD  T ++IL+AC
Sbjct: 577 TYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILSAC 636

Query: 322 AESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--DLV 378
           + +GL+  G+++  S+ + Y+ + +      + DM  + G +  A     G+ ++     
Sbjct: 637 SYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLGEEGNTFG 696

Query: 379 SWNAMLYGLAMHGQGE 394
            W ++L    +HG+ E
Sbjct: 697 IWGSLLGACRIHGEFE 712


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/629 (29%), Positives = 310/629 (49%), Gaps = 73/629 (11%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP---------------- 78
           QL   + K   Q DP +A  ++     C  +  A K F+ I+ P                
Sbjct: 183 QLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSY 242

Query: 79  ---------------DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123
                          DV  +N ++ A  Q+    +A  V +DM  +GV  D+ TY   L 
Sbjct: 243 GVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLT 302

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
           AC   +     + +HA + +     D +V +++++ Y+KCG      A+++F S+ +R+ 
Sbjct: 303 ACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGC--FKEARRVFSSLRDRNT 360

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEM---------------------------------- 209
           VSW  +I G ++ G  SE+  LF++M                                  
Sbjct: 361 VSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSL 420

Query: 210 -----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264
                  R  V  N+++  YAK G +  A  +F  +  R+IVSW+ M+  YS+ G++  A
Sbjct: 421 SLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKA 480

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILAACAE 323
           +  FD M  + ++ W  ++  Y + G  ++  ++Y  M  E  + PD  T +++   CA+
Sbjct: 481 REFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCAD 540

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
            G   LG ++     K     +T+V NA++ MY+KCG +  A  +F+ +++KDLVSWNAM
Sbjct: 541 MGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAM 600

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443
           + G + HG G++A+ +F  M  +G  PD  ++V VL +C+H+G + +G  YF  ++RD+ 
Sbjct: 601 ITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHN 660

Query: 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVL 503
           + P +EH+ CM+DLL R+G L EA  L+  MP++P A +WG LL AC+ H   ELAE   
Sbjct: 661 VSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAA 720

Query: 504 DCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
             L  L   D G Y +L+ I+A  G     A VR  M+    +K  G S +EV N+VH F
Sbjct: 721 KHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVF 780

Query: 564 SVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
              D  HP+   I + ++ L + +  +G+
Sbjct: 781 KAEDVSHPQVIAIREKLDELMEKIAQLGY 809



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 199/421 (47%), Gaps = 60/421 (14%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L   KQL AQ+I+     DPY+A  ++   A C     A +VF+ ++D +   +  
Sbjct: 306 KLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTV 365

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           LI   +Q    +++  +F  M+ + +  D F    ++  C+ +    L + +H+L  K G
Sbjct: 366 LIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSG 425

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +   + + NSLI  Y+KCG   +  A+ +F SM ERDIVSW  M+    + G + +AR  
Sbjct: 426 HTRAVVISNSLISMYAKCG--NLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELF-----EKIPHRNIVSWSTMVWG------ 254
           FD M  R+ ++WN +L  Y + G      +++     EK    + V++ T+  G      
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 255 -----------------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
                                        YSK G +  A+ +FD +  K LV W  +I+G
Sbjct: 544 NKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITG 603

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF--- 342
           Y++ GM K+A  ++D M + G KPD  + +++L++C+ SGL+  G        K+ F   
Sbjct: 604 YSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEG--------KFYFDML 655

Query: 343 KCNTNVC------NALVDMYAKCGSLDNAMSVFNGMTKKDLVS-WNAMLYGLAMHGQGEK 395
           K + NV       + +VD+ A+ G+L  A ++ + M  K     W A+L     HG  E 
Sbjct: 656 KRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNEL 715

Query: 396 A 396
           A
Sbjct: 716 A 716



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 127/519 (24%), Positives = 219/519 (42%), Gaps = 77/519 (14%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACN 126
           A ++F  +   DV  +NTL+    Q+     A   F+ M+  G    N FT+   +K+C 
Sbjct: 114 AEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCG 173

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
              W  +   +  L+ K G+ GD  V   ++D + +CG   V  A K F  +    +   
Sbjct: 174 ALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG--AVDFASKQFSQIERPTVFCR 231

Query: 187 NSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI- 245
           NSM+AG  K   +  A  LF+ MPERD VSWN ++   +++G    A  +   + +R + 
Sbjct: 232 NSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVR 291

Query: 246 -------------VSWSTMVWG-------------------------YSKDGDMEMAKLL 267
                           S++ WG                         Y+K G  + A+ +
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRV 351

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F  +  +  V WT++I G+ + G   E+  L++QM    +  D   L +I++ C+    +
Sbjct: 352 FSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDM 411

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS-------- 379
            L  ++H+   K        + N+L+ MYAKCG+L NA S+F+ M ++D+VS        
Sbjct: 412 CLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAY 471

Query: 380 -----------------------WNAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTF 415
                                  WNAML     HG  E  L ++S M  ++   PD  T+
Sbjct: 472 SQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTY 531

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           V +   C   G    G Q         G++        +I +  + GR+ EA ++   + 
Sbjct: 532 VTLFRGCADMGANKLGDQ-ITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLS 590

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
              + + W  ++    +H   + A E+ D +++ KG+ P
Sbjct: 591 -RKDLVSWNAMITGYSQHGMGKQAIEIFDDMLK-KGAKP 627



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/455 (23%), Positives = 191/455 (41%), Gaps = 76/455 (16%)

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS-MGE 180
           L++C  +      + +H  +   G    +F+ N+L+ +Y  CG   +  A+ L    + E
Sbjct: 35  LRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCG--ALPDARGLLRGDITE 92

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF--- 237
            ++++ N M+ G  K G LS+A  LF  MP RD  SWNT++ GY ++G    A E F   
Sbjct: 93  PNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSM 152

Query: 238 ----EKIPHR----------NIVSWSTMV---------WGYSKD--------------GD 260
               + +P+             + W  +          +G+  D              G 
Sbjct: 153 RRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGA 212

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYA-------------------------------EK 289
           ++ A   F ++   T+     +++GYA                               + 
Sbjct: 213 VDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQS 272

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G A+EA  +   M   G++ D  T  S L ACA+   LG G ++HA + +     +  V 
Sbjct: 273 GRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVA 332

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           +A+V++YAKCG    A  VF+ +  ++ VSW  ++ G   +G   ++L LF++M+ E   
Sbjct: 333 SAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMT 392

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
            D++    ++  C++   +    Q  +S+    G    V     +I +  + G L+ A  
Sbjct: 393 VDQFALATIISGCSNRMDMCLARQ-LHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAES 451

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +  SM  E + + W  +L A  +   +  A E  D
Sbjct: 452 IFSSME-ERDIVSWTGMLTAYSQVGNIGKAREFFD 485



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 116/296 (39%), Gaps = 76/296 (25%)

Query: 27  CKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           C ++   K   Q+    +K+ L  D  +   +I+  + C ++  A K+F+ +   D+  +
Sbjct: 538 CADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSW 597

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           N +I    Q+ +  QA  +F DM +KG   D  +Y  +L +C+           H+ + +
Sbjct: 598 NAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCS-----------HSGLVQ 646

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD------IVSWNSMIAGLVKGG 197
            G                           K +  M +RD      +  ++ M+  L + G
Sbjct: 647 EG---------------------------KFYFDMLKRDHNVSPGLEHFSCMVDLLARAG 679

Query: 198 ELSEARRLFDEMPER-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
            L EA+ L DEMP +  A  W  +L      G   LA EL                    
Sbjct: 680 NLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELA-EL-------------------- 718

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
                  AK LFD + +     + ++   YA+ G + ++A++   M + G+K + G
Sbjct: 719 ------AAKHLFD-LDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPG 767


>gi|297819530|ref|XP_002877648.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297323486|gb|EFH53907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 786

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 192/540 (35%), Positives = 278/540 (51%), Gaps = 62/540 (11%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           VF++I + +V + N +IR+ V N    +  +VF+ M    V  D++T+P +LKAC+    
Sbjct: 1   VFDEIPERNVIIINVMIRSYVNNGFYREGIQVFVTMCSCHVKPDHYTFPCVLKACSCSGN 60

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             + + IH    K G    +FV N L+  Y KCG                          
Sbjct: 61  IVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGF------------------------- 95

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-----KIPHR-- 243
                   LSEAR + DEM  RD VSWN+++ GYA+    + A E+       KI H   
Sbjct: 96  --------LSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAG 147

Query: 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME 303
            + S    V   + +  M +  + F +M  K+LV W ++I  Y +  M  EA  LY  ME
Sbjct: 148 TMASLLPAVSNTTTENVMYVKDMFF-KMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGME 206

Query: 304 EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363
             G +PD  ++ S+L AC ++  L LG K+H  I + +   N  + NAL+DMYAKCG LD
Sbjct: 207 ADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLD 266

Query: 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423
            A  VF  M  +D+VSW AM+      G+G  A+ LFS+M+D G  PD   FV  L AC+
Sbjct: 267 RARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACS 326

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
           HAG +++G   F  M   Y I P++EH  CM+DLLGR+G++KEA + +Q           
Sbjct: 327 HAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKMKEAYKFIQE---------- 376

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543
                 C+ +   E  E  L   I  + S  G Y +LSNI+A  G W +  N+R  MK  
Sbjct: 377 ------CQWNQTREFGE--LARCILTQTSQSGYYVLLSNIYAKAGRWEEETNIRNIMKSK 428

Query: 544 RAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH---AAKLSAEI 600
             +K  GAS+VEV+ E+H F V D+ HP+S +IY+ ++ L K +K  G    AAKL ++I
Sbjct: 429 GLKKNPGASNVEVNREIHTFLVGDRSHPQSNEIYRELDVLVKKMKICGDCHVAAKLISQI 488



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 148/346 (42%), Gaps = 44/346 (12%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+   K++     K+ L    ++   L+S    C  +  A  V +++   DV  +N+L+ 
Sbjct: 60  NIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVA 119

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              QN     A  V  +M+   +  D  T   LL A                        
Sbjct: 120 GYAQNQRFDDALEVCREMESVKISHDAGTMASLLPA------------------------ 155

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
              V N+  ++        V   K +F  MG++ +VSWN MI   +K     EA  L+  
Sbjct: 156 ---VSNTTTEN--------VMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSG 204

Query: 209 MP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGD 260
           M     E DAVS  ++L        ++L  ++   I  +    N++  + ++  Y+K G 
Sbjct: 205 MEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGC 264

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ++ A+ +F+ M ++ +V WT +IS Y   G   +A  L+ +M+++GL PD    ++ LAA
Sbjct: 265 LDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAA 324

Query: 321 CAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           C+ +GLL  G      + + Y+          +VD+  + G +  A
Sbjct: 325 CSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKMKEA 370


>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
 gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
          Length = 572

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 171/502 (34%), Positives = 281/502 (55%), Gaps = 46/502 (9%)

Query: 119 PFLLKA---CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
           P LL++   C G   +  V+  HAL ++ G   D FV  +L+ +Y+ CG VG   A+K+F
Sbjct: 73  PALLRSAARCVGAGAY--VRGAHALAFRVGSLDDGFVRTALVGAYAACGCVGD--ARKVF 128

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL-------------- 221
             M  RD+VSW  M+    +     EA   F +M     +S   IL              
Sbjct: 129 DGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMKNSGVLSDQLILATVLSACGHIRHLR 188

Query: 222 -------------------------DGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
                                    + YA    M +A +L+  +P +++VS + MV+GY+
Sbjct: 189 TGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEKLYNGMPRKDLVSSTAMVFGYA 248

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           ++   E+A+ +FD MP K +V W+ +ISGYA+     EA  L++ M+E G++PD+ T++S
Sbjct: 249 RNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLS 308

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +++ACA  G L     +HA I         ++CNAL+DM+AKCG ++ A+++FN M +K+
Sbjct: 309 VISACANLGSLDKAKWIHAFIKNNGLNKILHICNALIDMFAKCGGINLALNIFNEMPQKN 368

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +++W +M+   AMHG G+ AL LF +M++EG  P++ TF+ +L AC HAG + +G   F 
Sbjct: 369 VITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLFS 428

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           SM + YGI P+ EHYGCM+DLLGR+  ++EA+ L++SM + PN  +WG+LL AC  H  +
Sbjct: 429 SMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLIESMHLRPNVPVWGSLLAACWMHGDL 488

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           +L       +++L  +  G   +LS I+  + + N    VR  MK     K +G S +++
Sbjct: 489 KLGAFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRDVMKLQGVSKETGLSWMDL 548

Query: 557 DNEVHEFSVCDQLHPKSEQIYQ 578
           +   HEF+   + +P++++I+Q
Sbjct: 549 NEPFHEFTAGGEKYPENDKIFQ 570



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 190/405 (46%), Gaps = 45/405 (11%)

Query: 48  DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107
           D ++   L+ + A C  +G A KVF+ +   DV  +  ++ +  Q     +A   F  M+
Sbjct: 104 DGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGVMLDSYCQTRNYKEALLQFAKMK 163

Query: 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167
             GV +D      +L AC         + IH+ +       +  + ++LI+ Y+ C    
Sbjct: 164 NSGVLSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCA--S 221

Query: 168 VSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA 227
           + +A+KL+  M  +D+VS  +M+ G  +  +   AR +FD MPE+D VSW+ ++ GYA +
Sbjct: 222 MEMAEKLYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADS 281

Query: 228 GEMNLAFELF----------EKIPHRNIVS------------W----------------- 248
            + N A  LF          +++   +++S            W                 
Sbjct: 282 NQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKILHIC 341

Query: 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           + ++  ++K G + +A  +F+ MP K ++ WT +I+ +A  G  K A  L++QM   G++
Sbjct: 342 NALIDMFAKCGGINLALNIFNEMPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVE 401

Query: 309 PDDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           P++ T +++L AC  +GL+  G  + +S + +Y  +        +VD+  +   +  A++
Sbjct: 402 PNEVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVN 461

Query: 368 VFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           +   M  + ++  W ++L    MH  G+  LG F+  K     P+
Sbjct: 462 LIESMHLRPNVPVWGSLLAACWMH--GDLKLGAFAAKKILQLDPN 504



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 167/375 (44%), Gaps = 48/375 (12%)

Query: 17  LEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI 75
           L   L NL+  C ++   ++L+  + + DL      +  ++   A  R+  +A  +F+ +
Sbjct: 208 LSSALINLYASCASMEMAEKLYNGMPRKDLVS----STAMVFGYARNRKFEIARYIFDGM 263

Query: 76  QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
            + DV  ++ +I     ++   +A  +F DMQE G+  D  T   ++ AC         +
Sbjct: 264 PEKDVVSWSAMISGYADSNQPNEALSLFNDMQECGIRPDEVTMLSVISACANLGSLDKAK 323

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IHA I   G    + + N+LID ++KCG  G++LA  +F  M ++++++W SMI     
Sbjct: 324 WIHAFIKNNGLNKILHICNALIDMFAKCG--GINLALNIFNEMPQKNVITWTSMITAFAM 381

Query: 196 GGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251
            G+   A  LF++M     E + V++  +L     AG ++    LF           S+M
Sbjct: 382 HGDGKSALCLFEQMRNEGVEPNEVTFLNLLYACCHAGLVHEGRSLF-----------SSM 430

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           V  Y  +   E    + D +    L+               +EA  L + M    L+P+ 
Sbjct: 431 VQQYGIEPKHEHYGCMVDLLGRAKLM---------------QEAVNLIESMH---LRPNV 472

Query: 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD-MYAKCGSLDNAMSV-- 368
               S+LAAC   G L LG    A+    +   N +  + L+  +Y K  +L++A  V  
Sbjct: 473 PVWGSLLAACWMHGDLKLG--AFAAKKILQLDPNHDGASVLLSKIYMKSDNLNDAQEVRD 530

Query: 369 ---FNGMTKKDLVSW 380
                G++K+  +SW
Sbjct: 531 VMKLQGVSKETGLSW 545


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/385 (42%), Positives = 234/385 (60%), Gaps = 1/385 (0%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E D+   ++++  YA   ++  A +LF     R++VSW+ M+ GY K  +M  A+++FDR
Sbjct: 198 ECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFDR 257

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           M  + ++ W  +I+GYA  G   EA  L+DQM   G+KP + T++S+L+ACA  G L  G
Sbjct: 258 MVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKG 317

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
           + +H  IN  R + N+ V  ALVDMYAKCG +  A  VFN M  KD+++WN ++ G+A+H
Sbjct: 318 LHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIH 377

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G  ++A  LF  MK+ G  P+  TFV +L AC+HAG +D+G +    M   YGI P+VEH
Sbjct: 378 GNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEH 437

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           YGC+IDLL R+G L+EA+ L+ +MP+EPN    G LLG CR H   EL E V   LI L+
Sbjct: 438 YGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQ 497

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
               G Y +LSNI+AA   W+    VR  MK     K  G S +E+   VH F   D  H
Sbjct: 498 PCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSH 557

Query: 571 PKSEQIYQMINTLGKDLKP-VGHAA 594
           P+S +IY+ +N +   LK  +G++A
Sbjct: 558 PESNKIYEKLNEIHTRLKSAIGYSA 582



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/435 (30%), Positives = 217/435 (49%), Gaps = 52/435 (11%)

Query: 6   RAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPY---IAPKLISSLALC 62
           R P   +      + L   + CK L   KQ+ AQII       P+       L +     
Sbjct: 56  RTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITH--HNSPFQLSALASLSALSPFP 113

Query: 63  RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122
             +  A  +F+ +Q+P   LYN+LIRA   +    +A  ++  M + G+  D+ TYPF++
Sbjct: 114 TFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVI 173

Query: 123 KACNGKN--WFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           KACN  +  WF L  ++H  + K G+  D ++ +SLI  Y+    +G   AK+LF     
Sbjct: 174 KACNESSVTWFGL--LVHTHVVKSGFECDSYIVSSLIHLYANGKDLGA--AKQLFNLCSA 229

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
           RD+VSWN+MI G VK  E+  AR +FD M  RD +SWNT+++GYA  G+ N A  LF+++
Sbjct: 230 RDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQM 289

Query: 241 ------PHR---------------------------------NIVSWSTMVWGYSKDGDM 261
                 P                                   N +  + +V  Y+K G +
Sbjct: 290 RAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKI 349

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
            +A  +F+ M +K ++ W  II+G A  G  KEA +L+ +M+EAG++P+D T ++IL+AC
Sbjct: 350 SLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSAC 409

Query: 322 AESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVS 379
           + +G++  G K+   + + Y  +        ++D+ A+ G L+ AM +   M  + +  +
Sbjct: 410 SHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSA 469

Query: 380 WNAMLYGLAMHGQGE 394
             A+L G  +HG  E
Sbjct: 470 LGALLGGCRIHGNFE 484



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 140/336 (41%), Gaps = 76/336 (22%)

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           AK +F  +       +  +I   +      EA  LY  M ++GLKPD  T   ++ AC E
Sbjct: 119 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 178

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
           S +   G+ VH  + K  F+C++ + ++L+ +YA    L  A  +FN  + +D+VSWNAM
Sbjct: 179 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 238

Query: 384 LYGLAMH-------------------------------GQGEKALGLFSRMKDEGFGPDK 412
           + G   H                               G+  +AL LF +M+  G  P +
Sbjct: 239 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTE 298

Query: 413 YTFVGVLCACTHAGFIDKGV-----------------------------------QYFYS 437
            T V +L AC H G +DKG+                                   Q F +
Sbjct: 299 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNA 358

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP---VEPNAIIWGTLLGACRKHN 494
           ME        V  +  +I  +   G +KEA +L + M    VEPN I +  +L AC    
Sbjct: 359 MESK-----DVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAG 413

Query: 495 AVELAEEVLDCLIRLKGSDPG--NYTMLSNIFAATG 528
            V+  +++LDC+    G +P   +Y  + ++ A  G
Sbjct: 414 MVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAG 449


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  323 bits (828), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 189/628 (30%), Positives = 327/628 (52%), Gaps = 43/628 (6%)

Query: 12  SKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKV 71
           S + L++  ++N  + K+ +Q KQL AQ I+         A  +IS     + +  A+ +
Sbjct: 3   SSKALIKTLIKNPTRIKSKSQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLL 61

Query: 72  FNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131
           F  ++ P V  + ++IR     SL ++A   F++M+  G   D+  +P +LK+C      
Sbjct: 62  FKTLKSPPVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDL 121

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA-KKLFMSMGERDIVSWNSMI 190
              + +H  I + G   D++  N+L++ Y+K   +G  ++   +F  M +R   S +  +
Sbjct: 122 RFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDV 181

Query: 191 AG--LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG----------EMNL------ 232
                +    +   RR+F+ MP +D VS+NTI+ GYA++G          EM        
Sbjct: 182 KAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPD 241

Query: 233 AFELFEKIP-----------------------HRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           +F L   +P                         ++   S++V  Y+K   +E ++ +F 
Sbjct: 242 SFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 301

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
           R+  +  + W  +++GY + G   EA RL+ QM  A +KP      S++ ACA    L L
Sbjct: 302 RLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHL 361

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++H  + +  F  N  + +ALVDMY+KCG++  A  +F+ M   D VSW A++ G A+
Sbjct: 362 GKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHAL 421

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG G +A+ LF  MK +G  P++  FV VL AC+H G +D+   YF SM + YG+  ++E
Sbjct: 422 HGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELE 481

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY  + DLLGR+G+L+EA   +  M VEP   +W TLL +C  H  +ELAE+V + +  +
Sbjct: 482 HYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTV 541

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
              + G Y ++ N++A+ G W ++A +RL+M+K   +K    S +E+ N+ H F   D+ 
Sbjct: 542 DSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRS 601

Query: 570 HPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           HP  ++I + +  + + ++  G+ A  S
Sbjct: 602 HPSMDKINEFLKAVMEQMEKEGYVADTS 629


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 302/576 (52%), Gaps = 50/576 (8%)

Query: 31  NQTKQLFAQIIKLD---------LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH 81
           NQ   L+A+  KL          L+RD +    L+S+ A    +      F+ +   D  
Sbjct: 62  NQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSV 121

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
            YNT I     NS   ++  +F  MQ +G     +T   +L A          + IH  I
Sbjct: 122 SYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSI 181

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
               + G++F+ N+L D Y+KC                                 GE+ +
Sbjct: 182 IVRNFLGNVFIWNALTDMYAKC---------------------------------GEIEQ 208

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVSWSTMVWGY 255
           AR LFD + +++ VSWN ++ GYAK G+      L  ++      P +  V+ ST++  Y
Sbjct: 209 ARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQ--VTMSTIIAAY 266

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
            + G ++ A+ +F     K +V WT ++ GYA+ G  ++A  L+++M    ++PD  TL 
Sbjct: 267 CQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLS 326

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
           S++++CA+   L  G  VH          N  V +AL+DMY+KCG +D+A SVFN M  +
Sbjct: 327 SVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTR 386

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435
           ++VSWNAM+ G A +G  + AL LF  M  + F PD  TF+G+L AC H  +I++G +YF
Sbjct: 387 NVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYF 446

Query: 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNA 495
            S+   +G+ P ++HY CM++LLGR+GR+++A+ L+++M  +P+ +IW TLL  C     
Sbjct: 447 DSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGD 506

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555
           +  AE     L  L  +    Y MLSN++A+ G W  VA+VR  MK    +K +G S +E
Sbjct: 507 IVNAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIE 566

Query: 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           +DNEVH F+  D+ HP+SE IY+ +N L   L+  G
Sbjct: 567 IDNEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEG 602



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 48/240 (20%), Positives = 102/240 (42%), Gaps = 21/240 (8%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           K  +L+  + +  + I   L  +  ++  LI   + C  +  A  VFN +   +V  +N 
Sbjct: 334 KLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNA 393

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIH 138
           +I  C QN  +  A  +F +M ++    DN T+  +L AC        G+ +F  +   H
Sbjct: 394 MIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQH 453

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGG 197
            +     ++        +++   + G +  ++A  L  +M  + D + W+++++     G
Sbjct: 454 GMTPTLDHYA------CMVNLLGRTGRIEQAVA--LIKNMAHDPDFLIWSTLLSICSTKG 505

Query: 198 ELSE----ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
           ++      AR LF E+    AV +  + + YA  G       +   +  +N+  ++   W
Sbjct: 506 DIVNAEVAARHLF-ELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSW 564


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/608 (31%), Positives = 311/608 (51%), Gaps = 79/608 (12%)

Query: 56  ISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115
           IS L+   ++  A K F+ +Q   +  +N+++     N L  +A ++F +M E+ V + N
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWN 83

Query: 116 FTYPFLLK---ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAK 172
                 +K       +N F L+   + + +            +++  Y + G+VG   A+
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPERNVVSW-----------TAMVKGYMQEGMVGE--AE 130

Query: 173 KLFMSMGERDIVSWN-------------------------------SMIAGLVKGGELSE 201
            LF  M ER+ VSW                                +MI GL + G + E
Sbjct: 131 SLFWRMPERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDE 190

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           AR +FDEM ER+ V+W T++ GY +   +++A +LFE +P +  VSW++M+ GY+  G +
Sbjct: 191 ARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRI 250

Query: 262 EMAKLLFDRMPAKTLV-------------------------------PWTIIISGYAEKG 290
           E A+  F+ MP K ++                                W  +I  Y  KG
Sbjct: 251 EDAEEFFEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKG 310

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              EA  L+ QM++ G++P   +LISIL+ CA    L  G +VHA + + +F  +  V +
Sbjct: 311 FELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVAS 370

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
            L+ MY KCG L  A  VF+  + KD++ WN+++ G A HG GE+AL +F  M   G  P
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMP 430

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           +K T + +L AC++AG +++G++ F SME  + + P VEHY C +D+LGR+G++ +A+ L
Sbjct: 431 NKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMEL 490

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           ++SM ++P+A +WG LLGAC+ H+ ++LAE     L   +  + G Y +LS+I A+   W
Sbjct: 491 IESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKW 550

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD-QLHPKSEQIYQMINTLGKDLKP 589
             VA VR  M+     K  G S +EV  +VH F+    + HP+   I  M+      L+ 
Sbjct: 551 GDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLRE 610

Query: 590 VGHAAKLS 597
            G++   S
Sbjct: 611 AGYSPDCS 618



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 23/98 (23%), Positives = 48/98 (48%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   +Q+ A +++     D Y+A  L++    C ++  A  VF+     D+ ++N++I 
Sbjct: 346 SLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIIS 405

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
               + L  +A ++F +M   G   +  T   +L AC+
Sbjct: 406 GYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACS 443


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 160/375 (42%), Positives = 238/375 (63%)

Query: 224 YAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
           YA+   ++    +FE +   ++V  +TMV   +K GD+  A+ LFD MP +  V W  +I
Sbjct: 155 YAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMI 214

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           +GYA++G ++EA  L+  M+  G+K ++ ++IS++ AC   G L  G   HA I K + +
Sbjct: 215 AGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQ 274

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
              N+  ALVDMY KCG++D A+ VF  M +K++ +W+  + GLAM+G G+K L LFS M
Sbjct: 275 MTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFM 334

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
           K EG  P++ TF+ VL  C+  GF+D+G  +F SM+RD+GI P++EHYGCM+DL GR+GR
Sbjct: 335 KHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGR 394

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523
           L+EAL  + +MP++P+A  WG LL ACR +  +EL E     LI ++G + G Y  LSNI
Sbjct: 395 LEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYVSLSNI 454

Query: 524 FAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
           +A TG+W++V+NVR  MK     K  G S +EV+ EVHEF   D+ HP  + I  M   +
Sbjct: 455 YADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIETMWGEI 514

Query: 584 GKDLKPVGHAAKLSA 598
            K LK  G+ A  ++
Sbjct: 515 SKRLKLAGYVASTNS 529



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 195/420 (46%), Gaps = 50/420 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDVHLYNTLI 87
           L + KQ+  Q++   L  +  +  + ++S+A+     L  + ++ +    P +   N++I
Sbjct: 22  LKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMI 81

Query: 88  RACVQNSLNAQAFRVFLD-MQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           RA  ++    ++F+ +   +Q   V + DN+T+ FL++ C  ++       +H  + K G
Sbjct: 82  RAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTC-AQSACEAGPAVHGALIKHG 140

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +  D  V + LI  Y++   +  S   ++F S+ + D+V   +M++   K G++  AR L
Sbjct: 141 FEYDPHVESGLIFMYAEMSCL--SSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNL 198

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFE-------KIPHRNIVS----------- 247
           FD MP+RD VSWN ++ GYA+ G+   A  LF+       K+   +++S           
Sbjct: 199 FDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGAL 258

Query: 248 ----W-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGY 286
               W                 + +V  Y K G+++ A  +F  M  K +  W+  I G 
Sbjct: 259 DQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGL 318

Query: 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRFKCN 345
           A  G  ++   L+  M+  G+ P++ T IS+L  C+  G +  G     S+ + +  +  
Sbjct: 319 AMNGYGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPR 378

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404
                 +VD+Y + G L+ A++  N M  K    +W A+L    M+   E  LG F+  K
Sbjct: 379 LEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNME--LGEFASRK 436



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 128/288 (44%), Gaps = 37/288 (12%)

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG--LKPDDGTLISILAACAES 324
           + D+    TL     +I  Y++     ++ + Y+++ ++   + PD+ T   ++  CA+S
Sbjct: 65  ILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQS 124

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---------- 374
                G  VH ++ K+ F+ + +V + L+ MYA+   L +   VF  + K          
Sbjct: 125 ACEA-GPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMV 183

Query: 375 ---------------------KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
                                +D VSWNAM+ G A  GQ  +AL LF  M+ +G   ++ 
Sbjct: 184 SACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEV 243

Query: 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           + + V+ ACTH G +D+G      +E++  I   V     ++D+  + G +  AL++   
Sbjct: 244 SMISVVTACTHLGALDQGKWAHAYIEKN-KIQMTVNLGTALVDMYFKCGNVDRALKVFWE 302

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           M  E N   W T +G    +   +   E+    ++ +G  P   T +S
Sbjct: 303 MN-EKNVYTWSTAIGGLAMNGYGQKCLELFS-FMKHEGIAPNEITFIS 348


>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 527

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/362 (43%), Positives = 234/362 (64%), Gaps = 2/362 (0%)

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +LA +LF+ +P R+ V+++T++ G  ++G +  A  +FD MPA   V WT +I G  + G
Sbjct: 156 HLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNG 215

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
              EA   +  M   G++PD  TLI++++ACAE G LGLGM VH  + +   + N  + N
Sbjct: 216 RHDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIAN 275

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410
           +L+DMYA+CG ++ A  VF+GM K+ +VSWN+M+ G A +G+   A+  F  M+ EGF P
Sbjct: 276 SLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKP 335

Query: 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470
           D  TF GVL AC+H G  D+G++Y+  M  +YGI  ++EHYGC++DLLGRSG+L+EA+R+
Sbjct: 336 DAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRV 395

Query: 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530
           V +MP+ PN ++ G LL  CR H  V +AE+++  L+ L      NY +LSNI+AA G W
Sbjct: 396 VTTMPMRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKW 455

Query: 531 NKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           +    VR  MK    +K  G S+VE+D +VHEF   D+ HP++E+I QM+  L  ++   
Sbjct: 456 DGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQMLGLLMHEM--A 513

Query: 591 GH 592
           GH
Sbjct: 514 GH 515



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 121/263 (46%), Gaps = 41/263 (15%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           LA +LF +M  R  V++N++I+GL++ G ++ A  +FD MP  D VSW  ++DG  K G 
Sbjct: 157 LALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGR 216

Query: 230 MNLAFELFEKI------P---------------------------------HRNIVSWST 250
            + A + F  +      P                                  RN+   ++
Sbjct: 217 HDEAIDCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANS 276

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y++ G +E+A+ +F  M  +T+V W  +I G+A  G   +A   ++ M   G KPD
Sbjct: 277 LIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPD 336

Query: 311 DGTLISILAACAESGLLGLGMKVHASIN-KYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
             T   +L AC+  GL   G++ +  +  +Y           +VD+  + G L+ AM V 
Sbjct: 337 AVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQLEEAMRVV 396

Query: 370 NGMT-KKDLVSWNAMLYGLAMHG 391
             M  + + V   A+L G  MHG
Sbjct: 397 TTMPMRPNEVVLGALLAGCRMHG 419



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 139/327 (42%), Gaps = 36/327 (11%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           +IS L     +  A +VF+ +  PD   +  LI  CV+N  + +A   F  M   GV  D
Sbjct: 176 VISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPD 235

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
             T   ++ AC       L   +H L+ + G   ++ + NSLID Y++CG   V LA+++
Sbjct: 236 YVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCG--QVELARQV 293

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEM 230
           F  M +R +VSWNSMI G    G  ++A   F+ M       DAV++  +L   +  G  
Sbjct: 294 FSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLT 353

Query: 231 NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +     ++            M   Y     ME    + D +                  G
Sbjct: 354 DEGLRYYD-----------LMRAEYGIAARMEHYGCVVDLL---------------GRSG 387

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
             +EA R+   M    ++P++  L ++LA C   G +G+  ++   + +     + N   
Sbjct: 388 QLEEAMRVVTTMP---MRPNEVVLGALLAGCRMHGDVGMAEQLMQHLLELDPGGDANYV- 443

Query: 351 ALVDMYAKCGSLDNAMSVFNGMTKKDL 377
            L ++YA  G  D A  V + M  + L
Sbjct: 444 LLSNIYAAVGKWDGAGKVRSLMKARGL 470



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 99/233 (42%), Gaps = 39/233 (16%)

Query: 279 WTIIISGYAEKG--MAKEAARLYDQMEEAGLKPDDGTLISILAACAESG----LLGLGMK 332
           WT  I+  A++G   A  AA        A   P+D TL+++L+ACA+S        L + 
Sbjct: 67  WTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARRLALS 126

Query: 333 VHASINKYRFKCNTNVCNALVDMY-------------------------------AKCGS 361
           VHA + K  F  +  +   LV  Y                                + G 
Sbjct: 127 VHARVLKL-FPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMRNGL 185

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +  A  VF+GM   D VSW A++ G   +G+ ++A+  F  M  +G  PD  T + V+ A
Sbjct: 186 VAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAIDCFRAMLLDGVEPDYVTLIAVISA 245

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           C   G +  G+ + + +    G+   V     +ID+  R G+++ A ++   M
Sbjct: 246 CAEVGALGLGM-WVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGM 297



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 14/181 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +++  L+R+  IA  LI   A C Q+ LA +VF+ ++   V  +N++I     N   A A
Sbjct: 262 VVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADA 321

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIYKCGYFGDIFV 152
              F  M+ +G   D  T+  +L AC+       G  ++ L++  + +  +  ++G    
Sbjct: 322 VEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYG---- 377

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              ++D   + G +  ++     M M   ++V   +++AG    G++  A +L   + E 
Sbjct: 378 --CVVDLLGRSGQLEEAMRVVTTMPMRPNEVV-LGALLAGCRMHGDVGMAEQLMQHLLEL 434

Query: 213 D 213
           D
Sbjct: 435 D 435


>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
           chloroplastic [Vitis vinifera]
 gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
          Length = 533

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 268/491 (54%), Gaps = 40/491 (8%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           +Q IHA + K G        + ++   +      ++ A  +F  +   ++ SWN++I G 
Sbjct: 40  LQKIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQIHSPNLFSWNTIIRGF 99

Query: 194 VKGGELSEARRLFDEM-------PER---------------------------------D 213
            +      A  LF +M       P R                                 D
Sbjct: 100 SQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFD 159

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273
               NTI+  YA  G ++  ++ F +    +IV+W++M+ G +K G+++ ++ LFD MP 
Sbjct: 160 PFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPL 219

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           +  V W  +ISGY   G  +EA  L+ QM+E  +KP + T++S+L A A  G L  G  +
Sbjct: 220 RNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASARLGALKQGEWI 279

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           H  I K  F+ N  V  +++DMY KCGS+  A  VF     K L SWN M+ GLAM+G  
Sbjct: 280 HDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILGLAMNGCE 339

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGC 453
            +A+ LFSR++     PD  TFVGVL AC ++G +DK  +YF  M + Y I P ++HY C
Sbjct: 340 NEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSC 399

Query: 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513
           M+D LGR+G L+EA  L+++MPV P+AIIW +LL ACRKH  VELA+     ++ L G+D
Sbjct: 400 MVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELAKRAAKHIVDLDGND 459

Query: 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS 573
              Y +LSNI+AA+  + +    RL MK+ + +K  G S +EV+ E+HEF    +LHP++
Sbjct: 460 SCGYVLLSNIYAASDQFEEAMEQRLSMKEKQIEKEPGCSLIEVNGEIHEFVAGGRLHPQA 519

Query: 574 EQIYQMINTLG 584
           +++Y ++N LG
Sbjct: 520 QEVYSLLNELG 530



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 119/417 (28%), Positives = 192/417 (46%), Gaps = 52/417 (12%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR-----QMGLAIKVFNDIQDPDVH 81
           C  +   +++ A ++K  L + P     +   LA C       +  A  VF  I  P++ 
Sbjct: 34  CTTMKDLQKIHAHLLKTGLAKHPLAVSPV---LAFCATSPGGDINYAYLVFTQIHSPNLF 90

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            +NT+IR   Q+S    A  +F+DM     V     TYP + KA       H    +H  
Sbjct: 91  SWNTIIRGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKAYAQLGLAHYGAQLHGR 150

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G   D F+ N++I  Y+ CG +  S   K F    + DIV+WNSMI GL K GE+ 
Sbjct: 151 VIKLGLQFDPFIRNTIIYMYANCGFL--SEMWKAFYERMDFDIVAWNSMIMGLAKCGEVD 208

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----------------- 243
           E+R+LFDEMP R+ VSWN+++ GY + G +  A +LF ++                    
Sbjct: 209 ESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLFGQMQEERIKPSEFTMVSLLNASA 268

Query: 244 ----------------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                                 N++  ++++  Y K G +  A  +F+  P K L  W  
Sbjct: 269 RLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNT 328

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-Y 340
           +I G A  G   EA +L+ ++E + L+PDD T + +L AC  SGL+    +  + ++K Y
Sbjct: 329 MILGLAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTY 388

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
           + + +    + +VD   + G L+ A  +   M    D + W+++L     HG  E A
Sbjct: 389 KIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPDAIIWSSLLSACRKHGNVELA 445



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 42/217 (19%), Positives = 94/217 (43%), Gaps = 19/217 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L Q + +   I K + + +  +   +I     C  +G A +VF       +  +NT+I  
Sbjct: 273 LKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEMAPLKGLSSWNTMILG 332

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
              N    +A ++F  ++   +  D+ T+  +L ACN        K +F L+   + +  
Sbjct: 333 LAMNGCENEAIQLFSRLECSNLRPDDVTFVGVLTACNYSGLVDKAKEYFSLMSKTYKIEP 392

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSE 201
              ++      + ++D+  + G++    A++L  +M    D + W+S+++   K G +  
Sbjct: 393 SIKHY------SCMVDTLGRAGLL--EEAEELIRNMPVNPDAIIWSSLLSACRKHGNVEL 444

Query: 202 ARRLFDEMPE---RDAVSWNTILDGYAKAGEMNLAFE 235
           A+R    + +    D+  +  + + YA + +   A E
Sbjct: 445 AKRAAKHIVDLDGNDSCGYVLLSNIYAASDQFEEAME 481


>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 531

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/565 (32%), Positives = 294/565 (52%), Gaps = 79/565 (13%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL   KQ    +I   L RD     K I + +    +  A  VF     P+ +L+NT+IR
Sbjct: 27  NLKTLKQSHCFMIITGLNRDNLNVAKFIEACSNAGHLRYAYSVFTHQPFPNTYLHNTMIR 86

Query: 89  ACV------QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN--WFHLVQMIHAL 140
           A         +S+    +R F     K    D FT+PF+LK     +  WF   + +H  
Sbjct: 87  ALSLVDERNAHSIAITVYRKFWAFCAK---PDTFTFPFVLKIVVRVSDVWFG--RQVHGQ 141

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
               G+   + V   LI  YS C                                 G L 
Sbjct: 142 AVVFGFDSSVHVVTGLIQMYSSC---------------------------------GGLG 168

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
           +AR++FDEM  R                               ++  W+ ++ GY K G+
Sbjct: 169 DARKVFDEMRVR-------------------------------DVNVWNALLAGYGKVGE 197

Query: 261 MEMAKLLFDRMP--AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           M+ A+ L + MP   +  V WT +ISGYA  G A EA  ++ +M    + PD+ TL+++L
Sbjct: 198 MDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEAIEVFQRMLMENVDPDEVTLLAVL 257

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA+ G L LG ++ + ++        ++ NA++DMYAK G++  A+ VF  + ++++V
Sbjct: 258 SACADLGSLELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALEVFESVNERNVV 317

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           +W  ++ GLA HG G +AL +F RM   G  P+  TF+ +L AC+H G++D G ++F SM
Sbjct: 318 TWTTIITGLATHGHGAEALVMFDRMVKAGVKPNDVTFIAILSACSHVGWVDLGNRFFNSM 377

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
              YGI P +EHYGCMIDLLGR+G+L+EA  +++SMP E NA IWG+LL A   H+ +++
Sbjct: 378 RSKYGINPNIEHYGCMIDLLGRAGKLREAEEVIKSMPFESNAAIWGSLLAASNVHHDIDV 437

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E  L  LI+L+ ++ GNY +L+N+++  G W++   +R  MK    +K +G SS+EV+N
Sbjct: 438 GERALYQLIKLEPNNSGNYMLLANLYSNLGRWDESRMMRKMMKGIGVKKLAGESSIEVEN 497

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTL 583
            V++F   D  HP+ E+I++++  +
Sbjct: 498 RVYKFISGDLSHPQVEKIHELLQEM 522


>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
          Length = 613

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/576 (32%), Positives = 306/576 (53%), Gaps = 64/576 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +   KQL AQ+IK    RDP  A +L+  S+++  R +  A K+F  +  P+   YNTLI
Sbjct: 1   MQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLI 60

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           RA  +++    A  VF++M E      N FT+P + KAC         + +H L  K G 
Sbjct: 61  RALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGL 120

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D FV ++++  Y  C                                 G + +A RLF
Sbjct: 121 DSDEFVVSNVVRMYLSC---------------------------------GVMEDAHRLF 147

Query: 207 DEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKL 266
                         +DG     +     +        ++V W+ M+ GY + G++E+A+ 
Sbjct: 148 YR---------RVFVDGCDGIRDKKRRVD-------GDVVLWNVMIDGYVRIGELEVARN 191

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           LFD MP +++V W ++I+GYA+ G  KEA  ++ +M+ A + P+  TL+S+L A +  G 
Sbjct: 192 LFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGA 251

Query: 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYG 386
           L LG  VH    +     +  + +AL+DMYAKCGS++ A+ VF G+ K+++V+W+ ++ G
Sbjct: 252 LELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAG 311

Query: 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446
           LAMHG+ +  L  F  M+  G  P   T++G+L AC+HAG +++G  +F  M R  G+ P
Sbjct: 312 LAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEP 371

Query: 447 QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
           ++EHYGCM+DLLGR+G L+E+  L+ +MP++P+ +IW  LLGAC+ H  VE+ + V + L
Sbjct: 372 RIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHL 431

Query: 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVC 566
           + L   D G+Y  LSNI+A+ G+W  VA VRL MK+           ++V    H    C
Sbjct: 432 MELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKE-----------MDVSARWHPEDAC 480

Query: 567 DQLHPKSEQIYQMINTLGKDLK-PVGHAAKLSAEIG 601
             +  ++ + +Q   T  K ++ P+G    +S  +G
Sbjct: 481 XDMLEEAPEFHQTKETRFKAVRAPLGPKXXISTRLG 516


>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
 gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
          Length = 508

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/548 (33%), Positives = 285/548 (52%), Gaps = 68/548 (12%)

Query: 62  CRQMGL---AIKVFNDI-QDPDVHLYNTLIRACVQNSLNAQAFRVFL--DMQEKGVFTDN 115
           C  +G    A  +F  I   PD++LYN +I+A   +  + +A  +FL  ++Q  G+  D+
Sbjct: 20  CSSLGFYSYAYSLFTSITHAPDIYLYNNIIKALSSSPTHPKA-SIFLYNNIQLAGLRPDS 78

Query: 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175
           +++PF LKA    +     + +H+   + G   D+ V  + +  YS  G           
Sbjct: 79  YSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFG----------- 127

Query: 176 MSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFE 235
                                G + +AR++FD M                  G++ L   
Sbjct: 128 --------------------SGCICDARKMFDGMS--------------MSTGDVAL--- 150

Query: 236 LFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295
                       W+ M+ GY+K GD+  A+ LF+RMP + ++ WT +I+GYA+     +A
Sbjct: 151 ------------WNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPHDA 198

Query: 296 ARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVD 354
             L+ +M+   ++PD+  ++  L ACA  G L LG  +   I++      N  + NAL+D
Sbjct: 199 IALFRRMQLENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNALID 258

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAK G + +A+ VF  M  K +++W  M+ GLA+HG G +AL +FSRM+     P+  T
Sbjct: 259 MYAKSGDIKSALQVFENMNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVKPNDIT 318

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F+ +L AC+H G +  G  YF  M   YGI P++EHYGCMIDLLGR+G LKEA  L+  M
Sbjct: 319 FIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQTLLAQM 378

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P EPNA+IWG+LL AC  H   EL E  L  L+ L+  + GNY +LSNI+A+ G WN+  
Sbjct: 379 PFEPNAVIWGSLLAACNTHGDPELGELALQHLLELEPDNSGNYALLSNIYASRGRWNESR 438

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAA 594
            VR  M     +K  G S +EV+N VHEF   +  H + ++I ++++ + + L    H  
Sbjct: 439 VVRKVMWDAGVKKMPGGSLIEVNNRVHEFIAGEISHSQFDRIQEVLSKINRQLGLSQHFE 498

Query: 595 KLSAEIGE 602
           K S  + E
Sbjct: 499 KESGALLE 506


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 292/537 (54%), Gaps = 32/537 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F+ + D DV  +N++I   V N L  +   ++  M   G+  D  T   +L  C  
Sbjct: 204 AFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L + +H+L  K  +   I   N+L+D YSKCG +  +L  ++F  MGER++VSW 
Sbjct: 264 SGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL--RVFEKMGERNVVSWT 321

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           SMIAG  + G    A +L  +M +     D V+  +IL   A++G ++   ++ + I   
Sbjct: 322 SMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKAN 381

Query: 244 NIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           N+ S     + ++  Y+K G ME A  +F  M  K ++ W  +I                
Sbjct: 382 NMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI---------------- 425

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
                  LKPD  T+  +L ACA    L  G ++H  I +  +  + +V NALVD+Y KC
Sbjct: 426 -----GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L  A  +F+ +  KDLVSW  M+ G  MHG G +A+  F+ M+D G  PD+ +F+ +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+H+G +++G ++FY M+ D+ I P++EHY CM+DLL R+G L +A   ++++P+ P+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPD 600

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           A IWG LL  CR ++ +ELAE+V + +  L+  + G Y +L+NI+A    W +V  +R +
Sbjct: 601 ATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREK 660

Query: 540 MKKTRAQKPSGASSVEVDNEVHEF-SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           + K   +K  G S +E+  +V+ F S  +  HP S+ I  ++  + + +K  GH  K
Sbjct: 661 IGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPK 717



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 164/330 (49%), Gaps = 35/330 (10%)

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G+L E RR+FD M +++   WN ++  YAK G+   +  LF+ +  + I           
Sbjct: 148 GDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGI----------- 196

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           +    E A  LFD++  + ++ W  +ISGY   G+ +    +Y QM   G+  D  T+IS
Sbjct: 197 EGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIIS 256

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +L  CA SG L LG  VH+   K  F+   N  N L+DMY+KCG LD A+ VF  M +++
Sbjct: 257 VLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 316

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSW +M+ G    G+ + A+ L  +M+ EG   D      +L AC  +G +D G     
Sbjct: 317 VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-- 374

Query: 437 SMERDYGILPQVEH--YGC--MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG---- 488
               DY     +E   + C  ++D+  + G ++ A  +  +M V+ + I W T++G    
Sbjct: 375 ---HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK-DIISWNTMIGELKP 430

Query: 489 ----------ACRKHNAVELAEEVLDCLIR 508
                     AC   +A+E  +E+   ++R
Sbjct: 431 DSRTMACVLPACASLSALERGKEIHGYILR 460



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 208/471 (44%), Gaps = 87/471 (18%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           TY  +L+ C G   F   + +H++I       D  +   L+  Y+ CG   +   +++F 
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCG--DLKEGRRVFD 158

Query: 177 SMGERDIVSWNSMIAGLVKGGELSE--------------------ARRLFDEMPERDAVS 216
           +M ++++  WN M++   K G+  E                    A  LFD++ +RD +S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPH---------------------------------- 242
           WN+++ GY   G       +++++ +                                  
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 243 -----RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                R I   +T++  YSK GD++ A  +F++M  + +V WT +I+GY   G +  A +
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIK 338

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L  QME+ G+K D   + SIL ACA SG L  G  VH  I     + N  VCNAL+DMYA
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS++ A SVF+ M  KD++SWN M+        GE               PD  T   
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSRTMAC 437

Query: 418 VLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           VL AC     +++G + + Y +   Y     V +   ++DL  + G L  A RL+  M  
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLA-RLLFDMIP 494

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             + + W  ++     H     A    +  +R  G +P   + +S ++A +
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 119/500 (23%), Positives = 194/500 (38%), Gaps = 143/500 (28%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL----- 82
           K+    K++ + I    +  D  +  KL+S  A C  +    +VF+ ++  +V+L     
Sbjct: 113 KSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMV 172

Query: 83  ----------------------------------------------YNTLIRACVQNSLN 96
                                                         +N++I   V N L 
Sbjct: 173 SEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
            +   ++  M   G+  D  T   +L  C       L + +H+L  K  +   I   N+L
Sbjct: 233 ERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTL 292

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------ 210
           +D YSKCG +  +L  ++F  MGER++VSW SMIAG  + G    A +L  +M       
Sbjct: 293 LDMYSKCGDLDGAL--RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKL 350

Query: 211 ---------------------------------ERDAVSWNTILDGYAKAGEMNLAFELF 237
                                            E +    N ++D YAK G M  A  +F
Sbjct: 351 DVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVF 410

Query: 238 EKIPHRNIVSWSTMVW-----------------------------------GYSKD---- 258
             +  ++I+SW+TM+                                    GYS D    
Sbjct: 411 STMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 259 ----------GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                     G + +A+LLFD +P+K LV WT++I+GY   G   EA   +++M +AG++
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 309 PDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           PD+ + ISIL AC+ SGLL  G +  +   N +  +        +VD+ ++ G+L  A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 368 VFNGM-TKKDLVSWNAMLYG 386
               +    D   W A+L G
Sbjct: 591 FMETLPIAPDATIWGALLCG 610



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 143/337 (42%), Gaps = 72/337 (21%)

Query: 24  LHKCK---NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LH C    +L+  K +   I   +++ + ++   L+   A C  M  A  VF+ +   D+
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDI 418

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT+I                       +  D+ T   +L AC   +     + IH  
Sbjct: 419 ISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERGKEIHGY 457

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + GY  D  V N+L+D Y KCGV+G  LA+ LF  +  +D+VSW  MIAG    G  +
Sbjct: 458 ILRNGYSSDRHVANALVDLYVKCGVLG--LARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 201 EARRLFDEMP----ERDAVSWNTIL----------------------------------- 221
           EA   F+EM     E D VS+ +IL                                   
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 222 -DGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM----PAKT 275
            D  ++ G ++ A+E  E +P   +   W  ++ G     D+E+A+ + +R+    P  T
Sbjct: 576 VDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENT 635

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
              + ++ + YAE    +E  RL +++ + GL+ + G
Sbjct: 636 GY-YVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPG 671


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/573 (30%), Positives = 292/573 (50%), Gaps = 67/573 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM---GLAIKVFNDIQDPDVHLYNTL 86
           + Q KQ  A+I+ L L  D  I   L++ LA+         A+ ++N I  P V   N +
Sbjct: 44  ITQIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNM 103

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCG 145
           IR  V+  L   +  ++  M    V   N  T  F+L+AC+          +   + K G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
           +                                  +D+   N++I        +  A+++
Sbjct: 164 FV---------------------------------KDVFVRNALIHLYCTCCRVESAKQV 190

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAK 265
           FDE+P                                R++VSW++M+ G+ + G + +A+
Sbjct: 191 FDEVPSS------------------------------RDVVSWNSMIVGFVRLGQISVAQ 220

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
            LF  MP K ++ W  IISG  + G  ++A   + ++ E  L+P++  L+S+LAA A+ G
Sbjct: 221 KLFVEMPEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLRPNEAILVSLLAAAAQLG 280

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
            L  G ++H+  N  RF    ++  ALVDMYAKCG +D +  +F+ M +KD  SWN M+ 
Sbjct: 281 TLEYGKRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMIC 340

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445
           GLA HG G++AL LF +   +GF P   TF+GVL AC+ AG + +G  +F  M   YGI 
Sbjct: 341 GLATHGLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIE 400

Query: 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505
           P++EHYGCM+DLL R+G + +A+ ++  MP  P+ ++W ++LG+C+ H  +EL EE+ + 
Sbjct: 401 PEMEHYGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNK 460

Query: 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSV 565
           LI++  +  G+Y  L+ IFA    W  V+ VR  M +  + K +G S +E +  VH F  
Sbjct: 461 LIQMDPTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVA 520

Query: 566 CDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            D+ H ++ +IY+M+  +G  +   G++A +S+
Sbjct: 521 GDKEHERTTEIYKMLEIMGVRIAAAGYSANVSS 553


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/634 (29%), Positives = 325/634 (51%), Gaps = 50/634 (7%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           ++AP  F    LL   L    K   L + +++F ++   +L    +    L+S+LA  R 
Sbjct: 43  LQAPPTF----LLNHLLTAYAKSGRLARARRVFDEMPDPNL----FTRNALLSALAHSRL 94

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLK 123
           +    ++F  + + D   YN LI         A++ +++  + +E+ V     T   ++ 
Sbjct: 95  VPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIM 154

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             +  +   L   +H  + + G+    FV + L+D Y+K G++    A+++F  M  + +
Sbjct: 155 VASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI--RDARRVFQEMEAKTV 212

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           V +N++I GL++   + +A+ LF  M +RD+++W T++ G  + G    A ++F ++   
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 244 ---------------------------------------NIVSWSTMVWGYSKDGDMEMA 264
                                                  N+   S +V  YSK   + +A
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +F RM  + ++ WT +I GY +   ++EA R + +M+  G+KPDD TL S++++CA  
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANL 392

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L  G + H             V NALV +Y KCGS+++A  +F+ M+  D VSW A++
Sbjct: 393 ASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 452

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A  G+ ++ + LF +M   G  PD  TF+GVL AC+ AG ++KG  YF SM++D+GI
Sbjct: 453 TGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGI 512

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +P  +HY CMIDL  RSGR KEA   ++ MP  P+A  W TLL +CR    +E+ +   +
Sbjct: 513 VPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAE 572

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L+     +P +Y +L ++ AA G W +VA++R  M+  + +K  G S ++  N+VH FS
Sbjct: 573 NLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFS 632

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
             DQ HP S +IY+ +  L   +   G+   +S+
Sbjct: 633 ADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSS 666


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/653 (31%), Positives = 308/653 (47%), Gaps = 126/653 (19%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA--FRVFLDMQEKGVFTDNFTYPFL 121
            +  A  +F+ I  PDV  YN LIRA   +S  A A    ++  M    V  +N+T+PF 
Sbjct: 72  HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           LKAC+     H  + IH      G   D+FV  +L+D Y KC    +  A  +F +M  R
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC--LPDAAHIFATMPAR 189

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEM-------------------------------- 209
           D+V+WN+M+AG    G    A      M                                
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 210 -----------PERDAVSWNT--------ILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                      P R++ S  T        +LD YAK G +  A  +F+ +P RN V+WS 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTI-------------------------- 281
           ++ G+     M  A LLF  M A+ L    P +I                          
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 282 -----------IISGYAEKGMAKEAARLYDQM---------------------EEAGL-- 307
                      ++S YA+ G+  +A  L+D+M                     EEA L  
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 308 --------KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
                   +PD  T++S++ AC+    L  G   H S+        T++CNAL+DMYAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G +D +  VFN M  +D+VSWN M+ G  +HG G++A  LF  M + GF PD  TF+ +L
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+H+G + +G  +F+ M   YG+ P++EHY CM+DLL R G L EA   +QSMP+  +
Sbjct: 550 SACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
             +W  LLGACR +  ++L ++V   +  L     GN+ +LSNI++A G +++ A VR+ 
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            K    +K  G S +E++  +H F   DQ HP+S +IY+ ++ +   +K +G+
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 722



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 150/369 (40%), Gaps = 44/369 (11%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C +L+  +   QL A + K  +  D      L+S  A    +  AI +F+++   D 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             Y+ L+   VQN    +AF VF  MQ   V  D  T   L+ AC+        +  H  
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 466

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +   G   +  + N+LID Y+KCG   + L++++F  M  RDIVSWN+MIAG    G   
Sbjct: 467 VIIRGLASETSICNALIDMYAKCG--RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 201 EARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           EA  LF EM       D V++  +L   + +G +      F  + H           GY 
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGH-----------GYG 573

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
               ME    + D +               +  G   EA   Y+ ++   L+ D    ++
Sbjct: 574 LTPRMEHYICMVDLL---------------SRGGFLDEA---YEFIQSMPLRADVRVWVA 615

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV-----FNG 371
           +L AC     + LG KV   I +   +   N    L ++Y+  G  D A  V       G
Sbjct: 616 LLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV-LLSNIYSAAGRFDEAAEVRIIQKVQG 674

Query: 372 MTKKDLVSW 380
             K    SW
Sbjct: 675 FKKSPGCSW 683



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 104/248 (41%), Gaps = 22/248 (8%)

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG--MAKEAARLYDQMEEAGLKPDDGTLI 315
            G +  A  LFD++P+  +  +  +I  Y+      A +   LY +M    + P++ T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L AC+       G  +H        + +  V  AL+DMY KC  L +A  +F  M  +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 376 DLVSWNAMLYGLAMHGQGEKALG--LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           DLV+WNAML G A HG    A+   L  +M+     P+  T V +L      G + +G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 434 YFYSMERDY-------------GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA 480
                 R               G+L        ++D+  + G L  A R+  +MP   N 
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTA----LLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 481 IIWGTLLG 488
           + W  L+G
Sbjct: 305 VTWSALIG 312


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 193/581 (33%), Positives = 308/581 (53%), Gaps = 42/581 (7%)

Query: 16  LLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
            L+ +L +L+ K  NL+  + LF ++ +    RD +    ++S+ +    +     VF+ 
Sbjct: 59  FLQNRLLHLYAKSGNLSDARDLFDKMSR----RDVFSWNAMLSAYSKSGNVEDLRAVFDQ 114

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           +   D   YNT+I     N  ++QA   F+ MQE+G  + ++T+  +L AC+        
Sbjct: 115 MSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRG 174

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           + IH  I                        V  SL + +F+         WN++     
Sbjct: 175 KQIHGRI------------------------VATSLGESVFV---------WNALTNMYA 201

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----VSWST 250
           K G L +AR LFD M  ++ VSWN+++ GY + G+     +LF ++    +    V+ S 
Sbjct: 202 KCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISN 261

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y + G ++ A   F  +  K  V WT ++ G A+ G  ++A  L+ +M    ++PD
Sbjct: 262 ILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPD 321

Query: 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370
           + T+ S++++CA    L  G  VH     +    +  V +ALVDMY+KCG   +A  VF 
Sbjct: 322 NFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFK 381

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
            M  ++++SWN+M+ G A +G+  +AL L+  M  E   PD  TFVGVL AC HAG +++
Sbjct: 382 RMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVER 441

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G  YFYS+ + +G+ P  +HY CMI+LLGR+G + +A+ L++SM  EPN +IW TLL  C
Sbjct: 442 GQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVC 501

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
           R +  V   E     L  L   + G Y MLSNI+AA G W  VA VR  MK  + +K + 
Sbjct: 502 RINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAA 561

Query: 551 ASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
            S +E+DN+VH+F   D+ H ++EQIY+ +N L K L+  G
Sbjct: 562 YSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESG 602



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 171/324 (52%), Gaps = 13/324 (4%)

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-----PERDAVSWNTILDGYAKAGEMN 231
           S G  +  S+  ++   V+  ++ +A+RL   M        D    N +L  YAK+G ++
Sbjct: 16  SRGTANSESYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRLLHLYAKSGNLS 75

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
            A +LF+K+  R++ SW+ M+  YSK G++E  + +FD+M     V +  +I+G++  G 
Sbjct: 76  DARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGC 135

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNA 351
           + +A   + +M+E G +  D T +S+L AC++   +  G ++H  I       +  V NA
Sbjct: 136 SSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNA 195

Query: 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411
           L +MYAKCG+LD A  +F+ M  K++VSWN+M+ G   +GQ E    LF  M+  G  PD
Sbjct: 196 LTNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPD 255

Query: 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           + T   +L A    G+ID+  + F  ++    +       GC      ++G+ ++AL L 
Sbjct: 256 QVTISNILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGC-----AQNGKEEDALLLF 310

Query: 472 QSMPVE---PNAIIWGTLLGACRK 492
           + M +E   P+     +++ +C +
Sbjct: 311 REMLLENVRPDNFTISSVVSSCAR 334


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 175/511 (34%), Positives = 285/511 (55%), Gaps = 12/511 (2%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N  +R     SL +++  ++  M   G   D F++PF+LK+C   +     Q +H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS--WNSMIAGLVKGGELS 200
           K G   + FV  +LI  Y KCG+V  + A+K+F    +   +S  +N++I+G     +++
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLV--ADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEM--------NLAFELFEKIPHRNIVSWSTMV 252
           +A  +F  M E      +  + G      +        +L  +  +      +   ++ +
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K G +E  + LFD MP K L+ W  +ISGY++ G+A +   LY+QM+ +G+ PD  
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           TL+S+L++CA  G   +G +V   +    F  N  V NA + MYA+CG+L  A +VF+ M
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K LVSW AM+    MHG GE  L LF  M   G  PD   FV VL AC+H+G  DKG+
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           + F +M+R+Y + P  EHY C++DLLGR+GRL EA+  ++SMPVEP+  +WG LLGAC+ 
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438

Query: 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552
           H  V++AE     +I  + ++ G Y ++SNI++ + +   +  +R+ M++   +K  G S
Sbjct: 439 HKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498

Query: 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTL 583
            VE    VH F   D+ H ++E++++M++ L
Sbjct: 499 YVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL 529



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 192/407 (47%), Gaps = 19/407 (4%)

Query: 24  LHKCKNLN---QTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND-IQDPD 79
           L  C +L+     +QL   + K   + +P++   LIS    C  +  A KVF +  Q   
Sbjct: 60  LKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQ 119

Query: 80  VHL-YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIH 138
           + + YN LI     NS    A  +F  M+E GV  D+ T   L+  C    +  L + +H
Sbjct: 120 LSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLH 179

Query: 139 ALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
               K G   ++ V NS I  Y KCG   V   ++LF  M  + +++WN++I+G  + G 
Sbjct: 180 GQCVKGGLDSEVAVLNSFITMYMKCG--SVEAGRRLFDEMPVKGLITWNAVISGYSQNGL 237

Query: 199 LSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWST 250
             +   L+++M       D  +  ++L   A  G   +  E+ + +       N+   + 
Sbjct: 238 AYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNA 297

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
            +  Y++ G++  A+ +FD MP K+LV WT +I  Y   GM +    L+D M + G++PD
Sbjct: 298 SISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPD 357

Query: 311 DGTLISILAACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
               + +L+AC+ SGL   G+++  ++ + Y+ +      + LVD+  + G LD AM   
Sbjct: 358 GAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFI 417

Query: 370 NGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
             M  + D   W A+L    +H   + A   F+++ +  F P+   +
Sbjct: 418 ESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGY 462



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 9/249 (3%)

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
            PW + +   A + +  E+  LY  M  +G  PD  +   IL +CA   L   G ++H  
Sbjct: 19  TPWNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCH 78

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF--NGMTKKDLVSWNAMLYGLAMHGQGE 394
           + K   +    V  AL+ MY KCG + +A  VF  N  + +  V +NA++ G   + +  
Sbjct: 79  VTKGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVT 138

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
            A  +F RMK+ G   D  T +G++  CT   ++  G +  +      G+  +V      
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLG-RSLHGQCVKGGLDSEVAVLNSF 197

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD- 513
           I +  + G ++   RL   MPV+   I W  ++    ++    LA +VL+   ++K S  
Sbjct: 198 ITMYMKCGSVEAGRRLFDEMPVK-GLITWNAVISGYSQNG---LAYDVLELYEQMKSSGV 253

Query: 514 -PGNYTMLS 521
            P  +T++S
Sbjct: 254 CPDPFTLVS 262


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 172/491 (35%), Positives = 280/491 (57%), Gaps = 14/491 (2%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y  +L  C  +      Q +HA + K  Y   +++   LI  Y+KC  +G   A+++   
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGD--ARRVLDE 70

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLA 233
           M ER++VSW +MI+G  + G  SEA  LF EM       +  ++ T+L     +    L 
Sbjct: 71  MPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLG 130

Query: 234 FELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            ++   +       +I   S+++  Y+K G +  A+ +FD +P + +V  T IISGYA+ 
Sbjct: 131 RQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQL 190

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
           G+ +EA  L+ +++  G++ +  T  S+L A +    L  G +VH+ + + +      + 
Sbjct: 191 GLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQ 250

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-F 408
           N+L+DMY+KCGSL  +  +F+ M ++ ++SWNAML G + HG G +A+ LF  MK+E   
Sbjct: 251 NSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKV 310

Query: 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSM--ERDYGILPQVEHYGCMIDLLGRSGRLKE 466
            PD  TF+ VL  C+H G  D+G++ FY M  ++D G  P++EHYGC++DL GR+GR++E
Sbjct: 311 KPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD-GFEPEIEHYGCVVDLFGRAGRVEE 369

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A   ++ MP EP A IWG+LLGACR H  V + E V   L+ ++  + GNY +LSN++A+
Sbjct: 370 AFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYAS 429

Query: 527 TGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKD 586
            G W+ V  VR  MK+    K  G S +E+D  +H F   D+ HP+ E+++  +  L   
Sbjct: 430 AGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIK 489

Query: 587 LKPVGHAAKLS 597
           +K  G+  +LS
Sbjct: 490 IKEAGYVPELS 500



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 193/374 (51%), Gaps = 16/374 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +++ A +IK   +   Y+  +LI     CR +G A +V +++ + +V  +  +I  
Sbjct: 26  IREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISG 85

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q    ++A  +F++M   G   + FT+  +L +C   + F L + IH+L+ K  +   
Sbjct: 86  YSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESH 145

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
           IFV +SL+D Y+K G   +  A+++F  + ERD+VS  ++I+G  + G   EA    RRL
Sbjct: 146 IFVGSSLLDMYAKAG--KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRL 203

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFE-----LFEKIPHRNIVSWSTMVWGYSKDGD 260
             E    + V++ ++L   +    ++   +     L  K+P   +V  ++++  YSK G 
Sbjct: 204 QREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPF-YVVLQNSLIDMYSKCGS 262

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLKPDDGTLISILA 319
           +  ++ +FD MP +T++ W  ++ GY++ G+ +EA  L+  M EE  +KPD  T +++L+
Sbjct: 263 LTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLS 322

Query: 320 ACAESGLLGLGMKVHASI--NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
            C+  G+   G+++   +   K  F+        +VD++ + G ++ A      M  +  
Sbjct: 323 GCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT 382

Query: 378 VS-WNAMLYGLAMH 390
            + W ++L    +H
Sbjct: 383 AAIWGSLLGACRVH 396


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/629 (29%), Positives = 316/629 (50%), Gaps = 62/629 (9%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ   K  NL    Q+ AQ++   +    ++  +L+        +  A ++F+ + + +V
Sbjct: 17  LQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNV 76

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  ++          +  ++F  M  +GV  D+F +P + KAC+    + + + ++  
Sbjct: 77  FSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDY 136

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +   G+ G+  V  S++D + KCG   + +A++ F  +  +D+  WN M++G    GE  
Sbjct: 137 MLSIGFEGNSCVKGSILDMFIKCG--RMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFK 194

Query: 201 EARRLFDEMP----------------------------------------ERDAVSWNTI 220
           +A  +F +M                                         + D +  N++
Sbjct: 195 KALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSL 254

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTM--VWGYSKDGD----------MEMAKLLF 268
           +D YAK   + +A   F  I   ++VSW+ M  V G+++ GD          M +A  +F
Sbjct: 255 VDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVF 314

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
             +  + +V W  IIS  A+ G +  A  L  +M  + ++ +  T++S L AC++   L 
Sbjct: 315 SELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALR 374

Query: 329 LGMKVHASINKYRFKCNTNVCN----ALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
            G ++H    ++  +C  + CN    +L+DMY +CGS+  +  +F+ M ++DLVSWN M+
Sbjct: 375 QGKEIH----QFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMI 430

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
               MHG G  A+ LF + +  G  P+  TF  +L AC+H+G I++G +YF  M+ +Y +
Sbjct: 431 SVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAM 490

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
            P VE Y CM+DLL R+G+  E L  ++ MP EPNA +WG+LLGACR H   +LAE    
Sbjct: 491 DPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAAR 550

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L  L+    GNY +++NI++A G W   A +R  MK+    KP G S +EV  ++H F 
Sbjct: 551 YLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFV 610

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           V D  HP  EQI   + +L  D+K +G+ 
Sbjct: 611 VGDTSHPLMEQISAKMESLYFDIKEIGYV 639



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 103/225 (45%), Gaps = 13/225 (5%)

Query: 309 PDDGTLI--SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           PD+   I  SIL  C +   L LG +VHA +          + + L+++Y + G +++A 
Sbjct: 6   PDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDAR 65

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            +F+ M+++++ SW A++      G  E+ + LF  M +EG  PD + F  V  AC+   
Sbjct: 66  RMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 125

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGC----MIDLLGRSGRLKEALRLVQSMPVEPNAII 482
               G   +     DY +    E   C    ++D+  + GR+  A R  + +  + +  +
Sbjct: 126 NYRVGKDVY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFM 179

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           W  ++         + A  V   ++ L+G  P + T+ S + A T
Sbjct: 180 WNIMVSGYTSKGEFKKALNVFRKMV-LEGVKPNSITIASAVSACT 223


>gi|255567371|ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536026|gb|EEF37684.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 2000

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 203/629 (32%), Positives = 309/629 (49%), Gaps = 73/629 (11%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           NL++ ++LF ++     Q +      LIS      ++  ++  F      +V  +   I 
Sbjct: 102 NLDEARKLFDEMP----QTNEISWTALISGFMKYGRVRESMWYFERNPFQNVVSWTAAIS 157

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
             VQN  + +A ++F+ + E  V  +  T+  +++AC     F L   +  LI K GY  
Sbjct: 158 GYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEH 217

Query: 149 DIFVPNSLIDSYSKCGVVGVSL-----------------------------AKKLFMSMG 179
           D+ V NSLI    + G + ++                              A+++F  M 
Sbjct: 218 DLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMP 277

Query: 180 ERDIVSWNSMIAGLVKGGELSEARRLFDEMP----------------------------- 210
           +R+ VSW++MIA   + G   E+ RLF  M                              
Sbjct: 278 QRNEVSWSAMIARYCQSGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMN 337

Query: 211 ----------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
                     E+D    ++++D Y K GE      LF+ I  +N+VSW+ MV GYS +G 
Sbjct: 338 IHGHVTKIGFEKDVFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGH 397

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           ME AK LF+ MP +  V W+ II+G+ +     E   ++++M   G  P+  T  S+L A
Sbjct: 398 MEEAKYLFNIMPVRNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCA 457

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA +  L  G  +H  I K   +C+T V  AL DMYAK G ++++  VFN M KK+ VSW
Sbjct: 458 CASTASLDKGKNLHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMPKKNEVSW 517

Query: 381 NAMLYGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
            AM+ GLA  G  E++L LF  M K     P++  F+ VL AC+H+G +DKG+ YF SME
Sbjct: 518 TAMIQGLAESGLAEESLTLFEEMEKTSSIAPNEVMFLAVLFACSHSGLVDKGLWYFNSME 577

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
             YG+ P+  H+ C++D+L R+GRL EA   + SMP +P    W  LL  C+ +   ELA
Sbjct: 578 AVYGLKPKGRHFTCVVDMLSRAGRLFEAEEFIYSMPFQPETNAWAALLSGCKTYKNEELA 637

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           E V   L  +   +   Y +LSNI+A+ G W  V  VR  MK    +K  G S VE+ + 
Sbjct: 638 ERVAGKLWEMAEKNCAGYVLLSNIYASAGRWRDVLKVRKLMKAKGLKKSGGCSWVEIRDR 697

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLK 588
           VH F   D  H +S +IY+++  LG ++K
Sbjct: 698 VHSFYSEDGAHSQSAEIYEILELLGYEMK 726



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 145/573 (25%), Positives = 245/573 (42%), Gaps = 105/573 (18%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L+NL     +     L A + K  +  + YI+ KL+      R+   A ++  D    D+
Sbjct: 28  LKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMYLNYRKSAEADQISKDFDGFDL 87

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG------------K 128
            ++N +I A VQ     +A ++F +M +    T+  ++  L+                 +
Sbjct: 88  VVHNCMISANVQRGNLDEARKLFDEMPQ----TNEISWTALISGFMKYGRVRESMWYFER 143

Query: 129 NWFHLVQMIHALIYKCGYFGDIFV----------------PN-----SLIDSYSKCGVVG 167
           N F  V    A I   GY  + F                 PN     S++ + +  G  G
Sbjct: 144 NPFQNVVSWTAAI--SGYVQNGFSVEAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFG 201

Query: 168 VSLAK-KLFMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
           + ++   L +  G E D+   NS+I   ++ GE+  AR +FD M E+D VSW  ILD Y 
Sbjct: 202 LGMSVLGLIVKTGYEHDLAVSNSLITLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYV 261

Query: 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           +  E+  A  +F+++P RN VSWS M+  Y +                          SG
Sbjct: 262 EMDELGEARRIFDEMPQRNEVSWSAMIARYCQ--------------------------SG 295

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y E     E+ RL+ +M + G KP+     SIL+A A    L  GM +H  + K  F+ +
Sbjct: 296 YPE-----ESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKD 350

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK- 404
             V ++L+DMY KCG   +   +F+ + +K++VSWNAM+ G +++G  E+A  LF+ M  
Sbjct: 351 VFVSSSLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPV 410

Query: 405 -------------------DEGFG-----------PDKYTFVGVLCACTHAGFIDKGVQY 434
                              DE F            P+K TF  +LCAC     +DKG + 
Sbjct: 411 RNNVSWSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKG-KN 469

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
            +      GI         + D+  +SG ++ + ++   MP + N + W  ++    +  
Sbjct: 470 LHGKIVKLGIQCDTYVGTALTDMYAKSGDIESSKKVFNRMP-KKNEVSWTAMIQGLAESG 528

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             E +  + + + +     P     L+ +FA +
Sbjct: 529 LAEESLTLFEEMEKTSSIAPNEVMFLAVLFACS 561



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/417 (24%), Positives = 181/417 (43%), Gaps = 66/417 (15%)

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
           LLK    +        +HA ++K G   + ++   L+  Y        + A ++      
Sbjct: 27  LLKNLTNQGLIRDGSALHAHLFKTGISSEQYISIKLLIMY--LNYRKSAEADQISKDFDG 84

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI 240
            D+V  N MI+  V+ G L EAR+LFDEMP+ + +SW  ++ G+ K G +  +   FE+ 
Sbjct: 85  FDLVVHNCMISANVQRGNLDEARKLFDEMPQTNEISWTALISGFMKYGRVRESMWYFERN 144

Query: 241 PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300
           P +N+VSW+  +                               SGY + G + EA +L+ 
Sbjct: 145 PFQNVVSWTAAI-------------------------------SGYVQNGFSVEAMKLFI 173

Query: 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV------- 353
           ++ E+ +KP+  T  S++ ACA  G  GLGM V   I K  ++ +  V N+L+       
Sbjct: 174 KLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLITLCLRMG 233

Query: 354 ------------------------DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
                                   D+Y +   L  A  +F+ M +++ VSW+AM+     
Sbjct: 234 EIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQRNEVSWSAMIARYCQ 293

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
            G  E++L LF RM  EGF P+   F  +L A      +  G+     + +  G    V 
Sbjct: 294 SGYPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTK-IGFEKDVF 352

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
               +ID+  + G  K+   L  ++ +E N + W  ++G    +  +E A+ + + +
Sbjct: 353 VSSSLIDMYCKCGETKDGRFLFDTI-LEKNMVSWNAMVGGYSLNGHMEEAKYLFNIM 408


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/567 (32%), Positives = 311/567 (54%), Gaps = 10/567 (1%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           ++K+    + +I   LI + ++   + +A +VF++I   D+  +  +I +  +N   ++A
Sbjct: 72  VLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEA 131

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
              F  M+  G   +NFT+  +LKAC G   F   + +H  + K  Y  D++V   L++ 
Sbjct: 132 LEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLEL 191

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAV 215
           Y++CG      A + F  M + D++ W+ MI+   + G+  +A  +F +M       +  
Sbjct: 192 YTRCG--DNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQF 249

Query: 216 SWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           +++++L   A    ++L+  +     +     ++   + ++  Y+K G +E +  LF+ +
Sbjct: 250 TFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEAL 309

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             +  V W  II  Y + G  + A  L+  M    ++  + T  SIL ACA    L LG+
Sbjct: 310 SDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGL 369

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           +VH    K  +  +  V NAL+DMYAKCGS+ +A  +F+ +  +D VSWNA++ G +MHG
Sbjct: 370 QVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHG 429

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
            G +A+ +F+ MK+    PD+ TFVGVL AC++ G +D+G QYF SM++DYGI P +EHY
Sbjct: 430 LGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHY 489

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
            CM+ L+GRSG L +A++ ++ +P EP+ +IW  LLGAC  HN VEL       ++ L+ 
Sbjct: 490 TCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEP 549

Query: 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHP 571
            D  ++ +LSNI+A    W  VA VR  MK+   +K  G S +E    VH F+V D  H 
Sbjct: 550 RDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHA 609

Query: 572 KSEQIYQMINTLGKDLKPVGHAAKLSA 598
             + I  M+  L    +  G++ +L+A
Sbjct: 610 DLKLINGMLEFLNMKTRKAGYSPQLNA 636



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 122/430 (28%), Positives = 208/430 (48%), Gaps = 23/430 (5%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           VF+++ + +   + TLI    Q++   +AF +F  +  +G   + F +  +LK      W
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 131 FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI 190
             L +++H  + K GY  + F+  +LID+YS  G   VS+A+++F  +  +D+VSW  MI
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGC--VSMAREVFDEISSKDMVSWTGMI 119

Query: 191 AGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFE--KIPH------ 242
           A   +    SEA   F +M        N    G  KA    L  + F+  K  H      
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC---LGLQNFDAGKTVHCSVLKT 176

Query: 243 ---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
              R++     ++  Y++ GD + A   F  MP   ++PW+ +IS +A+ G +++A  ++
Sbjct: 177 NYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIF 236

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            QM  A + P+  T  S+L A A+   L L   +H    K     +  V NAL+  YAKC
Sbjct: 237 CQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKC 296

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G ++ +M +F  ++ ++ VSWN ++      G GE+AL LFS M        + T+  +L
Sbjct: 297 GCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSIL 356

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---- 474
            AC     ++ G+Q +  + +  YG    V     +ID+  + G +K+A  +   +    
Sbjct: 357 RACATLAALELGLQVHCLTAKTIYG--QDVAVGNALIDMYAKCGSIKDARFMFDMLDLRD 414

Query: 475 PVEPNAIIWG 484
            V  NAII G
Sbjct: 415 KVSWNAIICG 424



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 186/377 (49%), Gaps = 12/377 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           +N +  K +   ++K + +RD Y+   L+     C     A + F D+   DV  ++ +I
Sbjct: 161 QNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMI 220

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
               Q+  + +A  +F  M+   V  + FT+  +L+A        L + IH    K G  
Sbjct: 221 SRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLS 280

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+FV N+L+  Y+KCG +  S+  +LF ++ +R+ VSWN++I   V+ G+   A  LF 
Sbjct: 281 TDVFVSNALMACYAKCGCIEQSM--ELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFS 338

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFELF----EKIPHRNIVSWSTMVWGYSKDG 259
            M     +   V++++IL   A    + L  ++     + I  +++   + ++  Y+K G
Sbjct: 339 NMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCG 398

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            ++ A+ +FD +  +  V W  II GY+  G+  EA ++++ M+E   KPD+ T + +L+
Sbjct: 399 SIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLS 458

Query: 320 ACAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           AC+ +G L  G +   S+ + Y  +        +V +  + G+LD A+     +  +  +
Sbjct: 459 ACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSV 518

Query: 378 VSWNAMLYGLAMHGQGE 394
           + W A+L    +H   E
Sbjct: 519 MIWRALLGACVIHNDVE 535



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 123/269 (45%), Gaps = 14/269 (5%)

Query: 266 LLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG 325
           ++FD MP +  V +  +I GYA+     EA  L+ ++   G + +     ++L       
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME 60

Query: 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLY 385
              LG  VH  + K  +  NT +  AL+D Y+  G +  A  VF+ ++ KD+VSW  M+ 
Sbjct: 61  WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIA 120

Query: 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-----ER 440
             A +    +AL  FS+M+  GF P+ +TF GVL AC      D G     S+     ER
Sbjct: 121 SYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYER 180

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           D  +         +++L  R G   +A R    MP + + I W  ++    +    E A 
Sbjct: 181 DLYVGVG------LLELYTRCGDNDDAWRAFGDMP-KNDVIPWSFMISRFAQSGQSEKAL 233

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           E+  C +R     P  +T  S++  A+ D
Sbjct: 234 EIF-CQMRRAFVIPNQFT-FSSVLQASAD 260



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 124/261 (47%), Gaps = 11/261 (4%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ     ++L+ +K +    +K  L  D +++  L++  A C  +  ++++F  + D + 
Sbjct: 255 LQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRND 314

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT+I + VQ     +A  +F +M    V     TY  +L+AC       L   +H L
Sbjct: 315 VSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCL 374

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
             K  Y  D+ V N+LID Y+KCG   +  A+ +F  +  RD VSWN++I G    G   
Sbjct: 375 TAKTIYGQDVAVGNALIDMYAKCG--SIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGV 432

Query: 201 EARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTM 251
           EA ++F+ M E     D +++  +L   +  G ++   + F  +     +      ++ M
Sbjct: 433 EAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCM 492

Query: 252 VWGYSKDGDMEMAKLLFDRMP 272
           VW   + G+++ A    + +P
Sbjct: 493 VWLMGRSGNLDQAVKFIEDIP 513


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 188/634 (29%), Positives = 325/634 (51%), Gaps = 50/634 (7%)

Query: 5   IRAPTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64
           ++AP  F    LL   L    K   L + +++F ++   +L    +    L+S+LA  R 
Sbjct: 43  LQAPPTF----LLNHLLTAYAKSGRLARARRVFDEMPDPNL----FTRNALLSALAHSRL 94

Query: 65  MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLK 123
           +    ++F  + + D   YN LI         A++ +++  + +E+ V     T   ++ 
Sbjct: 95  VPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIM 154

Query: 124 ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI 183
             +  +   L   +H  + + G+    FV + L+D Y+K G++    A+++F  M  + +
Sbjct: 155 VASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLI--RDARRVFQEMEAKTV 212

Query: 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           V +N++I GL++   + +A+ LF  M +RD+++W T++ G  + G    A ++F ++   
Sbjct: 213 VMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAE 272

Query: 244 ---------------------------------------NIVSWSTMVWGYSKDGDMEMA 264
                                                  N+   S +V  YSK   + +A
Sbjct: 273 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLA 332

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +F RM  + ++ WT +I GY +   ++EA R + +M+  G+KPDD TL S++++CA  
Sbjct: 333 EAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANL 392

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L  G + H             V NALV +Y KCGS+++A  +F+ M+  D VSW A++
Sbjct: 393 ASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALV 452

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G A  G+ ++ + LF +M   G  PD  TF+GVL AC+ AG ++KG  YF SM++D+GI
Sbjct: 453 TGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGI 512

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +P  +HY CMIDL  RSGR KEA   ++ MP  P+A  W TLL +CR    +E+ +   +
Sbjct: 513 VPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAE 572

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L+     +P +Y +L ++ AA G W +VA++R  M+  + +K  G S ++  N+VH FS
Sbjct: 573 NLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFS 632

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
             DQ HP S +IY+ +  L   +   G+   +S+
Sbjct: 633 ADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSS 666


>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 149/370 (40%), Positives = 238/370 (64%)

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274
           ++ N ++D Y K   +  A  LF+++  R  +SW+ ++ G+ + G M  A+ LFD MP +
Sbjct: 131 ITENALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNR 190

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
           T+V WT IISGY   G   +A  ++ +M+ AG++PD+ ++IS+L ACA+ G L  G  +H
Sbjct: 191 TIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACAKLGALETGKWIH 250

Query: 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394
               +      T +CNAL++MY KCG +D A  +F+ M  +D++SW+ M+ GLA HG+  
Sbjct: 251 MFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWSTMIGGLANHGKVR 310

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454
           +A+ +F RMK     P+  TFVG+L AC HAGF ++G+ YF +M++D+ I P++EHYG +
Sbjct: 311 EAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGSL 370

Query: 455 IDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514
           +DLLGR+GRL +AL +V+ MP++P++ IWG+LL +CR H  +E+A   ++ L  L+  D 
Sbjct: 371 VDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIAMEHLEELEPDDT 430

Query: 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSE 574
           GNY +LSNI+A  G W+ V+ +R  ++  R +K  G S +EV+N   EF   D   P S+
Sbjct: 431 GNYVLLSNIYADLGKWDDVSRMRKLVRSKRMKKTPGCSLIEVNNVAQEFVSGDDSKPYSK 490

Query: 575 QIYQMINTLG 584
           +I+ ++  L 
Sbjct: 491 EIFWLLELLA 500



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 122/432 (28%), Positives = 205/432 (47%), Gaps = 54/432 (12%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + K+  A +IK  L +  ++  K+I        M  A  +F ++ DP+ +LYN +IRA
Sbjct: 1   MAELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRA 60

Query: 90  CVQNSLNA-------QAFRVFLDMQ--EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           C  NS+ +       Q  R + + Q  E  +  D FT+PF++KAC      +L + +HA 
Sbjct: 61  CTHNSMYSLTIDFYKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQ 120

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
            +K G    +   N+LID Y+KC    +  A  LF  M ER  +SWN +I+G V+ G++ 
Sbjct: 121 FFKFGKKSHLITENALIDMYTKCD--NLLDAHNLFDEMHERGAISWNGIISGHVRLGQMR 178

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-------HRNIVS------ 247
            AR LFDEMP R  VSW  I+ GY + G    A ++F ++          +I+S      
Sbjct: 179 RARALFDEMPNRTIVSWTAIISGYTRIGSYIDALDVFREMQIAGIEPDEASIISVLPACA 238

Query: 248 ---------W-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI 281
                    W                 + ++  Y+K G ++ A  LFD+M  + ++ W+ 
Sbjct: 239 KLGALETGKWIHMFCARNGLLRRTCICNALIEMYTKCGCIDQACQLFDQMRGRDVISWST 298

Query: 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-Y 340
           +I G A  G  +EA  ++++M++  +KP+  T + +L+ACA +G    G+    ++ K +
Sbjct: 299 MIGGLANHGKVREAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDF 358

Query: 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGL 399
             +       +LVD+  + G L  A+ +   M  K D   W ++L     H   E A+  
Sbjct: 359 HIEPEIEHYGSLVDLLGRAGRLSQALDIVEKMPMKPDSKIWGSLLSSCRTHCNIEVAVIA 418

Query: 400 FSRMKDEGFGPD 411
              +  E   PD
Sbjct: 419 MEHL--EELEPD 428



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 137/336 (40%), Gaps = 49/336 (14%)

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM---------EEAGL 307
           ++ DM+ A  LF  +       +  +I       M       Y QM          E  +
Sbjct: 32  RNEDMDYASFLFKEVIDPNAYLYNAMIRACTHNSMYSLTIDFYKQMLREYRNSQTSEDLI 91

Query: 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
            PD+ T   ++ ACA  GL  LG +VHA   K+  K +    NAL+DMY KC +L +A +
Sbjct: 92  LPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITENALIDMYTKCDNLLDAHN 151

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE--------------------- 406
           +F+ M ++  +SWN ++ G    GQ  +A  LF  M +                      
Sbjct: 152 LFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIVSWTAIISGYTRIGSYIDA 211

Query: 407 ----------GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
                     G  PD+ + + VL AC   G ++ G ++ +      G+L +      +I+
Sbjct: 212 LDVFREMQIAGIEPDEASIISVLPACAKLGALETG-KWIHMFCARNGLLRRTCICNALIE 270

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--P 514
           +  + G + +A +L   M    + I W T++G    H  V  A  + +   R+K ++  P
Sbjct: 271 MYTKCGCIDQACQLFDQMRGR-DVISWSTMIGGLANHGKVREAIAIFE---RMKQTNIKP 326

Query: 515 GNYTM--LSNIFAATGDWNKVANVRLQMKKTRAQKP 548
              T   L +  A  G W +       MKK    +P
Sbjct: 327 NGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEP 362


>gi|357138593|ref|XP_003570875.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 664

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 184/562 (32%), Positives = 305/562 (54%), Gaps = 33/562 (5%)

Query: 47  RDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           R+P     L++  A C ++  A ++F+ + D +V  +N ++   ++N +  +A  +F  M
Sbjct: 103 RNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELFDMM 162

Query: 107 QEK---GVFTDNFTYPFLLKACNGKNWF-----HLVQMIHALIYKCGY------------ 146
             +      T    Y    +    +  F     H   + +AL+   GY            
Sbjct: 163 PSRNDVSWLTMISGYIKKRRLREARELFDLSPSHPTSVCNALL--SGYVALSCLKDAEEL 220

Query: 147 FG-----DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           FG     D    N +I  Y++ G + V  A+ LF  M ++D +SW +++ G ++ G++  
Sbjct: 221 FGRMQRRDPVSWNVMITGYARAGRMQV--AQSLFDEMPQKDTISWTAVMRGYLQNGDVDA 278

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           + ++F ++P+RD V+WNT++ G+ ++  ++ A  LF ++P R++VSW+T++ G+ + GDM
Sbjct: 279 SWKVFQDIPDRDVVAWNTMMGGFVQSERLDDALRLFAEMPERDLVSWNTILQGHVQQGDM 338

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
             A   F  MP K    W  +ISG+ ++G    A  L  +M   GL+PD+ TL  +++ C
Sbjct: 339 ATANTWFRGMPEKDETSWNTLISGHKDEG----ALALLSEMIRGGLRPDEATLSVVISIC 394

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    LG G  VH    K  F+ +  V ++L+ MY+KCG +  A  VF  + ++D V+WN
Sbjct: 395 ASLVALGYGKMVHLYAVKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTWN 454

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           AM+   A HG   +AL LF++M  +GF PD  TF+ VL AC H G + +G +YF SM+ D
Sbjct: 455 AMIATYAYHGMASEALKLFNKMTKDGFRPDHATFLSVLSACAHKGDLYEGCRYFRSMQED 514

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           + + P+ +HY CM+DLLGR G + +A    + +P +     W TL  AC  H  V+L E 
Sbjct: 515 WNLTPRSDHYSCMVDLLGRLGFIYQAYDFTRKIPSDLQINAWETLFSACNAHGDVQLGEV 574

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
           +   +++ + SD G YT+L+NI+A+   W+  A+VR  MK+   +K +G S VE+  EV 
Sbjct: 575 IAKDVLQARPSDGGMYTLLANIYASKEMWSSAASVRGVMKEQGLKKETGCSWVELKGEVV 634

Query: 562 EFSVCDQLHPKSEQIYQMINTL 583
            FS  D  HP  E I Q ++ L
Sbjct: 635 SFSSNDNAHPLIEWICQEVDNL 656



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 115/340 (33%), Positives = 174/340 (51%), Gaps = 53/340 (15%)

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           DIF  N++I ++       V+ A+++F  M ER++ +WN MI+GLV    L++ARR+FD 
Sbjct: 42  DIFQWNAVITAH--LRAGRVAAARRVFDEMPERNVFTWNCMISGLVGNRMLADARRVFDA 99

Query: 209 MPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
           MP R+ VSW  +L GYA+ G +  A ELF+++P RN+VSW+ M+ GY ++G +E A+ LF
Sbjct: 100 MPVRNPVSWAALLTGYARCGRVAEARELFDRMPDRNVVSWNAMMSGYLRNGMVERARELF 159

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
           D MP++  V W  +ISGY +K   +EA  L+D      L P                   
Sbjct: 160 DMMPSRNDVSWLTMISGYIKKRRLREARELFD------LSPSH----------------- 196

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
                            T+VCNAL+  Y     L +A  +F  M ++D VSWN M+ G A
Sbjct: 197 ----------------PTSVCNALLSGYVALSCLKDAEELFGRMQRRDPVSWNVMITGYA 240

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM-ERDYGILPQ 447
             G+ + A  LF  M  +    D  ++  V+      G +D   + F  + +RD      
Sbjct: 241 RAGRMQVAQSLFDEMPQK----DTISWTAVMRGYLQNGDVDASWKVFQDIPDRD------ 290

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           V  +  M+    +S RL +ALRL   MP E + + W T+L
Sbjct: 291 VVAWNTMMGGFVQSERLDDALRLFAEMP-ERDLVSWNTIL 329



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 105/277 (37%), Gaps = 69/277 (24%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           +K   + D  +   LIS  + C  +  A +VF  +   D   +N +I     + + ++A 
Sbjct: 411 VKTGFEHDALVMSSLISMYSKCGLIAEASQVFKLLVQRDTVTWNAMIATYAYHGMASEAL 470

Query: 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160
           ++F  M + G   D+ T+  +L AC  K                   GD+         Y
Sbjct: 471 KLFNKMTKDGFRPDHATFLSVLSACAHK-------------------GDL---------Y 502

Query: 161 SKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220
             C         + F SM E     WN                      P  D  S   +
Sbjct: 503 EGC---------RYFRSMQE----DWNL--------------------TPRSDHYS--CM 527

Query: 221 LDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEM----AKLLFDRMPAKT 275
           +D   + G +  A++   KIP    I +W T+    +  GD+++    AK +    P+  
Sbjct: 528 VDLLGRLGFIYQAYDFTRKIPSDLQINAWETLFSACNAHGDVQLGEVIAKDVLQARPSDG 587

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + +T++ + YA K M   AA +   M+E GLK + G
Sbjct: 588 GM-YTLLANIYASKEMWSSAASVRGVMKEQGLKKETG 623


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 297/610 (48%), Gaps = 81/610 (13%)

Query: 28  KNLNQTKQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           K+L Q + L A I++  L + D  +   LI+  A CR + LA K F+++    +  +N L
Sbjct: 72  KDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNAL 131

Query: 87  IRACVQNSLNAQAFRVFLDMQEK---GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           I    +N  +  A +++ DM  K   G+  D  T+   L AC+        + I A    
Sbjct: 132 IAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVA 191

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            GY  D  V N+LI+ YSKCG                                  L  AR
Sbjct: 192 SGYASDSIVQNALINMYSKCG---------------------------------SLESAR 218

Query: 204 RLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI----PHRNIVSWSTMV------- 252
           ++FD +  RD ++WNT++ GYAK G    A ELF+++    P  N+V++  ++       
Sbjct: 219 KVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLE 278

Query: 253 --------------WGYSKD---------------GDMEMAKLLFDRMPAKTLVPWTIII 283
                          GY  D                 +E A+ +F+R+  + ++ W I+I
Sbjct: 279 DLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILI 338

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
             Y + G AK+A  ++ QM+   + P++ TL ++L+ACA  G    G  VHA I   R K
Sbjct: 339 VAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCK 398

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  + N+L++MY +CGSLD+ + VF  +  K LVSW+ ++   A HG     L  F  +
Sbjct: 399 ADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWEL 458

Query: 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463
             EG   D  T V  L AC+H G + +GVQ F SM  D+G+ P   H+ CM+DLL R+GR
Sbjct: 459 LQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGR 518

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP-GNYTMLSN 522
           L+ A  L+  MP  P+A+ W +LL  C+ HN  + A  V D L  L+  D     T+LSN
Sbjct: 519 LEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSN 578

Query: 523 IFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINT 582
           ++A  G W+ V   R    +  A+K  G S +E+++ VHEF   D+ HP+ E I   I  
Sbjct: 579 VYAEAGRWDDVRKTR---NRRAARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKR 635

Query: 583 LGKDLKPVGH 592
           L K +K  G+
Sbjct: 636 LSKQMKDAGY 645



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 76/265 (28%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G +  A  +F  +     V WT+I++ +A  G  +EA   Y +M   GL+PD    
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 315 ISILAACAESGLLGLGMKVHASINKYR-FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           +  +  C+ S  L  G  +HA I + +  + +  +  AL+ MYA+C  L+ A   F+ M 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRM---KDEGFGPDKYTFVGVLCACTHAGFIDK 430
           KK LV+WNA++ G + +G    AL ++  M     EG  PD  TF   L AC+  G I +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 431 GVQY-FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           G +    ++   Y     V++   +I++  + G L+ A ++   +    + I W T++  
Sbjct: 182 GREIEARTVASGYASDSIVQN--ALINMYSKCGSLESARKVFDRLK-NRDVIAWNTMISG 238

Query: 490 CRKHNAVELAEEVLDCLIRLKGSDP 514
             K  A   A + L+   R+  +DP
Sbjct: 239 YAKQGA---ATQALELFQRMGPNDP 260



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCGS+ +A++VF+ +   + VSW  ++   A +G   +ALG + RM  EG  PD   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 415 FVGVLCACTHAGFIDKGVQYFYSM 438
           FV  +  C+ +  + +G Q  ++M
Sbjct: 61  FVVAIGVCSSSKDLKQG-QLLHAM 83


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 309/573 (53%), Gaps = 11/573 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   + + AQ+    +  +   A  L +  A CR+   A +VF+ +   D   +N L+ 
Sbjct: 74  DLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVA 133

Query: 89  ACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              +N L   A  + + MQE+ G   D+ T   +L AC         +  HA   + G  
Sbjct: 134 GYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLE 193

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             + V  +++D+Y KCG   +  A+ +F  M  ++ VSWN+MI G  + G+  EA  LF+
Sbjct: 194 ELVNVATAILDAYCKCG--DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFN 251

Query: 208 EMPERDA-VSWNTILDGYAKAGEMNL------AFELFEKIP-HRNIVSWSTMVWGYSKDG 259
            M E    V+  ++L      GE+          EL  +I    N+   + ++  YSK  
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK 311

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +++A  +FD +  +T V W  +I G A+ G +++A RL+ +M+   +KPD  TL+S++ 
Sbjct: 312 RVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           A A+         +H    +     +  V  AL+DMYAKCG ++ A  +FN   ++ +++
Sbjct: 372 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVIT 431

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNAM++G   HG G+ A+ LF  MK  G  P++ TF+ VL AC+HAG +D+G +YF SM+
Sbjct: 432 WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMK 491

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DYG+ P +EHYG M+DLLGR+G+L EA   +Q MP++P   ++G +LGAC+ H  VELA
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELA 551

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           EE    +  L   +   + +L+NI+A    W  VA VR  M+K   QK  G S +++ NE
Sbjct: 552 EESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNE 611

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +H F      H ++++IY  +  L +++K VG+
Sbjct: 612 IHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGY 644



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 129/479 (26%), Positives = 212/479 (44%), Gaps = 96/479 (20%)

Query: 99  AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158
           A   F+ M   G      T+  LLK C  +      + +HA +   G   +     +L +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 159 SYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG----ELSEARRLFDEMPER-D 213
            Y+KC     + A+++F  M  RD V+WN+++AG  + G     +    R+ +E  ER D
Sbjct: 103 MYAKCR--RPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPD 160

Query: 214 AVSW-----------------------------------NTILDGYAKAGEMNLAFELFE 238
           +++                                      ILD Y K G++  A  +F+
Sbjct: 161 SITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFD 220

Query: 239 KIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
            +P +N VSW+ M+ GY+++GD                               ++EA  L
Sbjct: 221 WMPTKNSVSWNAMIDGYAQNGD-------------------------------SREALAL 249

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           +++M E G+   D ++++ L AC E G L  GM+VH  + +     N +V NAL+ MY+K
Sbjct: 250 FNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSK 309

Query: 359 CGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV 418
           C  +D A  VF+ + ++  VSWNAM+ G A +G  E A+ LF+RM+ E   PD +T V V
Sbjct: 310 CKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSV 369

Query: 419 LCACT------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472
           + A         A +I  G      +++D  +L        +ID+  + GR+  A R++ 
Sbjct: 370 IPALADISDPLQARWI-HGYSIRLHLDQDVYVLT------ALIDMYAKCGRVNIA-RILF 421

Query: 473 SMPVEPNAIIWGTLLGACRKHN----AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
           +   E + I W  ++     H     AVEL EE     ++  G  P   T LS + A +
Sbjct: 422 NSARERHVITWNAMIHGYGSHGFGKAAVELFEE-----MKSIGIVPNETTFLSVLSACS 475


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 202/653 (30%), Positives = 309/653 (47%), Gaps = 126/653 (19%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA--FRVFLDMQEKGVFTDNFTYPFL 121
            +  A  +F+ I  PDV  YN LIRA   +S  A A    ++  M    V  +N+T+PF 
Sbjct: 72  HLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFA 131

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           LKAC+     H  + IH      G   D+FV  +L+D Y KC    +  A  +F +M  R
Sbjct: 132 LKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC--LPDAAHIFATMPAR 189

Query: 182 DIVSWNSMIAGLVKGGELSEA---------------------RRLFDEMPERDAVSWNT- 219
           D+V+WN+M+AG    G    A                       L   + ++ A++  T 
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 220 -----------------------------ILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250
                                        +LD YAK G +  A  +F+ +P RN V+WS 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTI-------------------------- 281
           ++ G+     M  A LLF  M A+ L    P +I                          
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKS 369

Query: 282 -----------IISGYAEKGMAKEAARLYDQM---------------------EEAGL-- 307
                      ++S YA+ G+  +A  L+D+M                     EEA L  
Sbjct: 370 GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVF 429

Query: 308 --------KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
                   +PD  T++S++ AC+    L  G   H S+        T++CNAL+DMYAKC
Sbjct: 430 KKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKC 489

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G +D +  VFN M  +D+VSWN M+ G  +HG G++A  LF  M + GF PD  TF+ +L
Sbjct: 490 GRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLL 549

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+H+G + +G  +F+ M   YG+ P++EHY CM+DLL R G L EA   +QSMP+  +
Sbjct: 550 SACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRAD 609

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
             +W  LLGACR +  ++L ++V   +  L     GN+ +LSNI++A G +++ A VR+ 
Sbjct: 610 VRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRII 669

Query: 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            K    +K  G S +E++  +H F   DQ HP+S +IY+ ++ +   +K +G+
Sbjct: 670 QKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGY 722



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 150/369 (40%), Gaps = 44/369 (11%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C +L+  +   QL A + K  +  D      L+S  A    +  AI +F+++   D 
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             Y+ L+   VQN    +AF VF  MQ   V  D  T   L+ AC+        +  H  
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGS 466

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           +   G   +  + N+LID Y+KCG   + L++++F  M  RDIVSWN+MIAG    G   
Sbjct: 467 VIIRGLASETSICNALIDMYAKCG--RIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGK 524

Query: 201 EARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           EA  LF EM       D V++  +L   + +G +      F  + H           GY 
Sbjct: 525 EATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRH-----------GYG 573

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
               ME    + D +               +  G   EA   Y+ ++   L+ D    ++
Sbjct: 574 LTPRMEHYICMVDLL---------------SRGGFLDEA---YEFIQSMPLRADVRVWVA 615

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV-----FNG 371
           +L AC     + LG KV   I +   +   N    L ++Y+  G  D A  V       G
Sbjct: 616 LLGACRVYKNIDLGKKVSRMIQELGPEGTGNFV-LLSNIYSAAGRFDEAAEVRIIQKVQG 674

Query: 372 MTKKDLVSW 380
             K    SW
Sbjct: 675 FKKSPGCSW 683



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 14/244 (5%)

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG--MAKEAARLYDQMEEAGLKPDDGTLI 315
            G +  A  LFD++P+  +  +  +I  Y+      A +   LY +M    + P++ T  
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK 375
             L AC+       G  +H        + +  V  AL+DMY KC  L +A  +F  M  +
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 376 DLVSWNAMLYGLAMHGQGEKALG--LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           DLV+WNAML G A HG    A+   L  +M+     P+  T V +L      G + +G  
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 434 Y--------FYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484
                     +S       L      G  ++D+  + G L  A R+  +MP   N + W 
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NEVTWS 308

Query: 485 TLLG 488
            L+G
Sbjct: 309 ALIG 312


>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
 gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
 gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
 gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 196/548 (35%), Positives = 301/548 (54%), Gaps = 18/548 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG-LAIKVFNDIQDP- 78
           L+ + +C +L   KQ+  Q+I  DL RD  I  K+++ L         +  + + I+   
Sbjct: 10  LELISRCSSLRVFKQIQTQLITRDLLRDDLIINKVVTFLGKSADFASYSSVILHSIRSVL 69

Query: 79  DVHLYNTLIRA---CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQ 135
               YNTL+ +   C +  +   A++ F+     G   D FT+P + KAC   +     +
Sbjct: 70  SSFSYNTLLSSYAVCDKPRVTIFAYKTFV---SNGFSPDMFTFPPVFKACGKFSGIREGK 126

Query: 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
            IH ++ K G++ DI+V NSL+  Y  CG      A K+F  M  RD+VSW  +I G  +
Sbjct: 127 QIHGIVTKMGFYDDIYVQNSLVHFYGVCG--ESRNACKVFGEMPVRDVVSWTGIITGFTR 184

Query: 196 GGELSEARRLFDEMP-ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWST--- 250
            G   EA   F +M  E +  ++  +L    + G ++L   +   I  R +++S  T   
Sbjct: 185 TGLYKEALDTFSKMDVEPNLATYVCVLVSSGRVGCLSLGKGIHGLILKRASLISLETGNA 244

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKP 309
           ++  Y K   +  A  +F  +  K  V W  +ISG      +KEA  L+  M+  +G+KP
Sbjct: 245 LIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKP 304

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D   L S+L+ACA  G +  G  VH  I     K +T++  A+VDMYAKCG ++ A+ +F
Sbjct: 305 DGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIF 364

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           NG+  K++ +WNA+L GLA+HG G ++L  F  M   GF P+  TF+  L AC H G +D
Sbjct: 365 NGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVD 424

Query: 430 KGVQYFYSME-RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488
           +G +YF+ M+ R+Y + P++EHYGCMIDLL R+G L EAL LV++MPV+P+  I G +L 
Sbjct: 425 EGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDEALELVKAMPVKPDVRICGAILS 484

Query: 489 ACRKHNAV-ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547
           AC+    + EL +E+LD  + ++  D G Y +LSNIFAA   W+ VA +R  MK     K
Sbjct: 485 ACKNRGTLMELPKEILDSFLDIEFEDSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISK 544

Query: 548 PSGASSVE 555
             G+S +E
Sbjct: 545 VPGSSYIE 552


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 191/554 (34%), Positives = 299/554 (53%), Gaps = 36/554 (6%)

Query: 62  CRQMGLAIKVFND-IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPF 120
           C QM  A+ +F+D   + +V  +N +I   + N    + F  +  M+ +GV  D FT+P 
Sbjct: 5   CNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPC 64

Query: 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180
            +KAC        ++ IH L++K G   D+F+ ++L++ Y K G++    A+  F  +  
Sbjct: 65  AIKACLD---VLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLM--EHAQVAFEELPI 119

Query: 181 RDIVSWNSMIAGLVKGGE----LSEARRLFDE--MPERDAVSWNTILDGYAKAGEMN--- 231
           RD+V WN+M+ G  + G+    L   RR+ DE  +P R  V+   IL  +A  G++N   
Sbjct: 120 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVT--GILSVFAVMGDLNNGR 177

Query: 232 LAFELFEKIPHRNIVSWS-TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290
           +      K+ + + V+ S +++  Y K   +E A  +F+ M  K +  W  I S + + G
Sbjct: 178 IIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCG 237

Query: 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA------------SIN 338
                 RL D+M  AG++PD  T+ ++L AC+    L  G ++H              I+
Sbjct: 238 DHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDID 297

Query: 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398
               K      NA++DMYAKCGS+ +A  VF  M  KD+ SWN M+ G  MHG G +AL 
Sbjct: 298 DVLLK------NAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALE 351

Query: 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
           +FSRM +    PD+ TFVGVL AC+HAGF+ +G  +   M+  Y + P +EHY C+ID+L
Sbjct: 352 MFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDML 411

Query: 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518
           GR+G+L EA  L  +MP+E N ++W  LL ACR H    LAE     +  L+    G+Y 
Sbjct: 412 GRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYV 471

Query: 519 MLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQ 578
           ++SN++ A G + +V  VR  M++   +K  G S +E+ N VH F   D+ HP++  IY 
Sbjct: 472 LMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYA 531

Query: 579 MINTLGKDLKPVGH 592
            +N+L   L   G+
Sbjct: 532 GLNSLTARLCEHGY 545



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 169/380 (44%), Gaps = 18/380 (4%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C ++ + K++   + K  L+ D +I   L++       M  A   F ++   DV L+N +
Sbjct: 69  CLDVLEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAM 128

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           +    Q          F  M ++ V    FT   +L         +  ++IH    K GY
Sbjct: 129 VNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGY 188

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
              + V NSLID Y KC  +  +L  ++F  M E+DI SWNS+ +   + G+     RL 
Sbjct: 189 DSGVAVSNSLIDMYGKCKCIEDAL--EIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLL 246

Query: 207 DEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKI----------PHRNIVSWSTMV 252
           D M     + D V+  T+L   +    +    E+   +             +++  + ++
Sbjct: 247 DRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVI 306

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y+K G M  A L+F+RM  K +  W I+I GY   G   EA  ++ +M E  LKPD+ 
Sbjct: 307 DMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEV 366

Query: 313 TLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371
           T + +L+AC+ +G +  G    A + +KY           ++DM  + G LD A  +   
Sbjct: 367 TFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALT 426

Query: 372 M-TKKDLVSWNAMLYGLAMH 390
           M  + + V W A+L    +H
Sbjct: 427 MPIEANPVVWRALLAACRLH 446



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 92/184 (50%), Gaps = 17/184 (9%)

Query: 355 MYAKCGSLDNAMSVFNGMTKK-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY 413
           MY+KC  ++ A+S+F+  T + ++ ++NA++ G   +G  E+    + +M++EG  PDK+
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 414 TFVGVLCACTHAGFIDK--GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
           TF   + AC     I K  G+ + + +E D  I         +++   + G ++ A    
Sbjct: 61  TFPCAIKACLDVLEIKKIHGLLFKFGLELDVFI------GSALVNCYLKFGLMEHAQVAF 114

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTM--LSNIFAAT 527
           + +P+  + ++W  ++    +    E+   VL+   R+      P  +T+  + ++FA  
Sbjct: 115 EELPIR-DVVLWNAMVNGYAQIGQFEM---VLETFRRMNDESVVPSRFTVTGILSVFAVM 170

Query: 528 GDWN 531
           GD N
Sbjct: 171 GDLN 174


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 307/602 (50%), Gaps = 82/602 (13%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL    IK +L  D +I   L++  +    +  +  +FN +   D  L+N++I + +   
Sbjct: 283 QLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFG 342

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN----GKNWFHLVQMIHALIYKCGYFGDI 150
            +A+A  +F+ M+ + +  D  T   +L  CN    G  W    + +HA   K G   D 
Sbjct: 343 FHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIWG---RGLHAHAMKSGIELDA 399

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           ++ N+L+  Y                                 VK  +++ A+ +F++M 
Sbjct: 400 YLGNALLSMY---------------------------------VKHNQITAAQYVFEKMR 426

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFE-------KIPHRNIVSW-------STMVWG-- 254
             D +SWNT++  +A++     AFELF        K     IVS        S +V+G  
Sbjct: 427 GLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRS 486

Query: 255 -----------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                                  Y   GD   A  +F R P + LV W  +IS Y +   
Sbjct: 487 IHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDN 546

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK--YRFKCNTNVC 349
           A +A  L++ M    L+P+  T+I+IL +C +   L LG  +HA   +     + + ++ 
Sbjct: 547 AGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLA 605

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           NA + MYA+CG L  A  +F  +  + +VSWNAM+ G  MHG+G  A   F++M D+GF 
Sbjct: 606 NAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFK 665

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  +F  VL AC+H+G    G+Q F+SM RD+GI PQ+ HYGCM+DLLGR G   EA+ 
Sbjct: 666 PNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIA 725

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
            + SMP+EP+A IW  LL +C+  +  +L E +   L+ L+ S+PGN+ +LSNI+AA G 
Sbjct: 726 FINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGL 785

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           W++V  +R  +++    KP G S + + N+VH F+  D LHP+SE+IY+ +N+L   ++ 
Sbjct: 786 WSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRD 845

Query: 590 VG 591
           +G
Sbjct: 846 LG 847



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 192/414 (46%), Gaps = 20/414 (4%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  LN      ++ + I  LDL  D  +   L+     C  +  A KVF ++ + D+
Sbjct: 67  LKACGRLNAIGNGVRIHSCIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDL 126

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N LI   V      +A  +F++M++ G+  ++ T   LL AC       L Q IH  
Sbjct: 127 VSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGY 186

Query: 141 IYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
             + G F  D +V  +L+  Y +   V   L+ ++F  M  R+IVSWN++I G +  G+ 
Sbjct: 187 CLRNGLFDMDAYVGTALVGFYMRFDAV---LSHRVFSLMLVRNIVSWNAIITGFLNVGDC 243

Query: 200 SEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTM 251
           ++A +L+  M     + DAV+   ++   A+ G + L  +L +     N+++     + +
Sbjct: 244 AKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNAL 303

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  YS +G +E +  LF+ +P      W  +IS Y   G   EA  L+ +M    +K D 
Sbjct: 304 LNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDV 363

Query: 312 GTLISILAAC---AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
            T+  +L+ C    +  + G G+  HA   K   + +  + NAL+ MY K   +  A  V
Sbjct: 364 RTIAIMLSLCNDLNDGSIWGRGLHAHAM--KSGIELDAYLGNALLSMYVKHNQITAAQYV 421

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           F  M   D++SWN M+   A      KA  LF  M +     + YT V +L  C
Sbjct: 422 FEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 72/379 (18%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N++I+   +   +      +  M+  G+  D+ T P +LKAC   N       IH+ I 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                 D+ V  +L+D Y KCG+V                                 +EA
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLV---------------------------------AEA 114

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-------HRNIVSW------- 248
            ++F EMPERD VSWN ++ GY        A  LF ++         R +V+        
Sbjct: 115 SKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEM 174

Query: 249 -------------------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                                     T + G+    D  ++  +F  M  + +V W  II
Sbjct: 175 LELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWNAII 234

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           +G+   G   +A +LY  M   G+K D  T++ ++ ACAE G L LGM++H    K+   
Sbjct: 235 TGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLI 294

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  + NAL++MY+  GSL+++ ++FN +   D   WN+M+      G   +A+ LF +M
Sbjct: 295 NDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKM 354

Query: 404 KDEGFGPDKYTFVGVLCAC 422
           + E    D  T   +L  C
Sbjct: 355 RLERIKEDVRTIAIMLSLC 373



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 8/238 (3%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G +  A  +F  MP + LV W  +ISGY      KEA  L+ +M++AGL P+  T+
Sbjct: 105 YCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTV 164

Query: 315 ISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMS--VFNG 371
           +++L AC E   L LG ++H   +    F  +  V  ALV  Y +    D  +S  VF+ 
Sbjct: 165 VALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMR---FDAVLSHRVFSL 221

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  +++VSWNA++ G    G   KAL L+S M  EG   D  T + V+ AC   G +  G
Sbjct: 222 MLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLG 281

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +Q  + +   + ++  +     ++++   +G L+ +  L  ++P   +A +W +++ +
Sbjct: 282 MQ-LHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTS-DAALWNSMISS 337



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+++            L  +++M+  G  PD  T   VL AC     I  GV+  +S  
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVR-IHSCI 86

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRKHNA 495
           R   ++  V     ++D   + G + EA ++   MP    V  NA+I G +   C K   
Sbjct: 87  RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAV 146

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           +   E      ++  G  P + T+++ + A
Sbjct: 147 LLFVE------MKKAGLTPNSRTVVALLLA 170


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 309/573 (53%), Gaps = 11/573 (1%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   + + AQ+    +  +   A  L +  A CR+   A +VF+ +   D   +N L+ 
Sbjct: 74  DLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVA 133

Query: 89  ACVQNSLNAQAFRVFLDMQEK-GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              +N L   A  + + MQE+ G   D+ T   +L AC         +  HA   + G  
Sbjct: 134 GYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLE 193

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
             + V  +++D+Y KCG   +  A+ +F  M  ++ VSWN+MI G  + G+  EA  LF+
Sbjct: 194 ELVNVATAILDAYCKCG--DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFN 251

Query: 208 EMPERDA-VSWNTILDGYAKAGEMNL------AFELFEKIP-HRNIVSWSTMVWGYSKDG 259
            M E    V+  ++L      GE+          EL  +I    N+   + ++  YSK  
Sbjct: 252 RMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCK 311

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
            +++A  +FD +  +T V W  +I G A+ G +++A RL+ +M+   +KPD  TL+S++ 
Sbjct: 312 RVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIP 371

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           A A+         +H    +     +  V  AL+DMYAKCG ++ A  +FN   ++ +++
Sbjct: 372 ALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVIT 431

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WNAM++G   HG G+ A+ LF  MK  G  P++ TF+ VL AC+HAG +D+G +YF SM+
Sbjct: 432 WNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMK 491

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            DYG+ P +EHYG M+DLLGR+G+L EA   +Q MP++P   ++G +LGAC+ H  VELA
Sbjct: 492 EDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELA 551

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNE 559
           EE    +  L   +   + +L+NI+A    W  VA VR  M+K   QK  G S +++ NE
Sbjct: 552 EESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNE 611

Query: 560 VHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +H F      H ++++IY  +  L +++K VG+
Sbjct: 612 IHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGY 644



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 137/464 (29%), Positives = 226/464 (48%), Gaps = 34/464 (7%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           ++  +RA    S    A   F+ M   G      T+  LLK C  +      + +HA + 
Sbjct: 27  HHARLRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLA 86

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGG----E 198
             G   +     +L + Y+KC     + A+++F  M  RD V+WN+++AG  + G     
Sbjct: 87  ARGIDSEALAATALANMYAKCR--RPADARRVFDRMPVRDRVAWNALVAGYARNGLARMA 144

Query: 199 LSEARRLFDEMPER-DAVSWNTILDGYAKAGEMNLAFELFE---KIPHRNIVSWSTMVW- 253
           +    R+ +E  ER D+++  ++L   A A  +    E      +     +V+ +T +  
Sbjct: 145 MEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILD 204

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            Y K GD+  A+++FD MP K  V W  +I GYA+ G ++EA  L+++M E G+   D +
Sbjct: 205 AYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVS 264

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
           +++ L AC E G L  GM+VH  + +     N +V NAL+ MY+KC  +D A  VF+ + 
Sbjct: 265 VLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD 324

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT------HAGF 427
           ++  VSWNAM+ G A +G  E A+ LF+RM+ E   PD +T V V+ A         A +
Sbjct: 325 RRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARW 384

Query: 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487
           I  G      +++D  +L        +ID+  + GR+  A R++ +   E + I W  ++
Sbjct: 385 I-HGYSIRLHLDQDVYVLT------ALIDMYAKCGRVNIA-RILFNSARERHVITWNAMI 436

Query: 488 GACRKHN----AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
                H     AVEL EE     ++  G  P   T LS + A +
Sbjct: 437 HGYGSHGFGKAAVELFEE-----MKSIGIVPNETTFLSVLSACS 475


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 192/602 (31%), Positives = 307/602 (50%), Gaps = 82/602 (13%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           QL    IK +L  D +I   L++  +    +  +  +FN +   D  L+N++I + +   
Sbjct: 283 QLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFG 342

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN----GKNWFHLVQMIHALIYKCGYFGDI 150
            +A+A  +F+ M+ + +  D  T   +L  CN    G  W    + +HA   K G   D 
Sbjct: 343 FHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIW---GRGLHAHAMKSGIELDA 399

Query: 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210
           ++ N+L+  Y                                 VK  +++ A+ +F++M 
Sbjct: 400 YLGNALLSMY---------------------------------VKHNQITAAQYVFEKMR 426

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFE-------KIPHRNIVSW-------STMVWG-- 254
             D +SWNT++  +A++     AFELF        K     IVS        S +V+G  
Sbjct: 427 GLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFCKDGSDLVFGRS 486

Query: 255 -----------------------YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
                                  Y   GD   A  +F R P + LV W  +IS Y +   
Sbjct: 487 IHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDN 546

Query: 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK--YRFKCNTNVC 349
           A +A  L++ M    L+P+  T+I+IL +C +   L LG  +HA   +     + + ++ 
Sbjct: 547 AGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLA 605

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           NA + MYA+CG L  A  +F  +  + +VSWNAM+ G  MHG+G  A   F++M D+GF 
Sbjct: 606 NAFITMYARCGKLQYAEKIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFK 665

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
           P+  +F  VL AC+H+G    G+Q F+SM RD+GI PQ+ HYGCM+DLLGR G   EA+ 
Sbjct: 666 PNNVSFASVLSACSHSGLTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIA 725

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
            + SMP+EP+A IW  LL +C+  +  +L E +   L+ L+ S+PGN+ +LSNI+AA G 
Sbjct: 726 FINSMPIEPDASIWRALLSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGL 785

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           W++V  +R  +++    KP G S + + N+VH F+  D LHP+SE+IY+ +N+L   ++ 
Sbjct: 786 WSEVVQIRKWLRERGLGKPPGTSWIVIGNQVHHFTATDVLHPQSERIYENLNSLTSLIRD 845

Query: 590 VG 591
           +G
Sbjct: 846 LG 847



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 192/414 (46%), Gaps = 20/414 (4%)

Query: 24  LHKCKNLNQTK---QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           L  C  LN      ++ + I  LDL  D  +   L+     C  +  A KVF ++ + D+
Sbjct: 67  LKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDL 126

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +N LI   V      +A  +F++M++ G+  ++ T   LL AC       L Q IH  
Sbjct: 127 VSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGY 186

Query: 141 IYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
             + G F  D +V  +L+  Y +   V   L+ ++F  M  R+IVSWN++I G +  G+ 
Sbjct: 187 CLRNGLFDMDAYVGTALVGFYMRFDAV---LSHRVFSLMLVRNIVSWNAIITGFLNVGDC 243

Query: 200 SEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTM 251
           ++A +L+  M     + DAV+   ++   A+ G + L  +L +     N+++     + +
Sbjct: 244 AKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLINDLFILNAL 303

Query: 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
           +  YS +G +E +  LF+ +P      W  +IS Y   G   EA  L+ +M    +K D 
Sbjct: 304 LNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDV 363

Query: 312 GTLISILAAC---AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
            T+  +L+ C    +  + G G+  HA   K   + +  + NAL+ MY K   +  A  V
Sbjct: 364 RTIAIMLSLCNDLNDGSIWGRGLHAHAM--KSGIELDAYLGNALLSMYVKHNQITAAQYV 421

Query: 369 FNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           F  M   D++SWN M+   A      KA  LF  M +     + YT V +L  C
Sbjct: 422 FEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC 475



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 160/379 (42%), Gaps = 72/379 (18%)

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N++I+   +   +      +  M+  G+  D+ T P +LKAC   N       IH+ I 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
                 D+ V  +L+D Y KCG+V                                 +EA
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLV---------------------------------AEA 114

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-------HRNIVSW------- 248
            ++F EMPERD VSWN ++ GY        A  LF ++         R +V+        
Sbjct: 115 SKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLACGEM 174

Query: 249 -------------------------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                                     T + G+    D  ++  +F  M  + +V W  II
Sbjct: 175 LELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFDAVLSHRVFSLMLVRNIVSWNAII 234

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343
           +G+   G   +A +LY  M   G+K D  T++ ++ ACAE G L LGM++H    K+   
Sbjct: 235 TGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAIKFNLI 294

Query: 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
            +  + NAL++MY+  GSL+++ ++FN +   D   WN+M+      G   +A+ LF +M
Sbjct: 295 NDLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAIALFIKM 354

Query: 404 KDEGFGPDKYTFVGVLCAC 422
           + E    D  T   +L  C
Sbjct: 355 RLERIKEDVRTIAIMLSLC 373



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 123/238 (51%), Gaps = 8/238 (3%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K G +  A  +F  MP + LV W  +ISGY      KEA  L+ +M++AGL P+  T+
Sbjct: 105 YCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTV 164

Query: 315 ISILAACAESGLLGLGMKVHA-SINKYRFKCNTNVCNALVDMYAKCGSLDNAMS--VFNG 371
           +++L AC E   L LG ++H   +    F  +  V  ALV  Y +    D  +S  VF+ 
Sbjct: 165 VALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMR---FDAVLSHRVFSL 221

Query: 372 MTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
           M  +++VSWNA++ G    G   KAL L+S M  EG   D  T + V+ AC   G +  G
Sbjct: 222 MLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLG 281

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
           +Q  + +   + ++  +     ++++   +G L+ +  L  ++P   +A +W +++ +
Sbjct: 282 MQ-LHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTS-DAALWNSMISS 337



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+++            L  +++M+  G  PD  T   VL AC     I  GV+  +S  
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVR-IHSFI 86

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRKHNA 495
           R   ++  V     ++D   + G + EA ++   MP    V  NA+I G +   C K   
Sbjct: 87  RGLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAV 146

Query: 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
           +   E      ++  G  P + T+++ + A
Sbjct: 147 LLFVE------MKKAGLTPNSRTVVALLLA 170


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 194/625 (31%), Positives = 308/625 (49%), Gaps = 82/625 (13%)

Query: 49  PYIAPKLISSLALCRQMGLAIKVFNDIQDP--DVHLYNTLIRACVQNSLNAQAFRVFLDM 106
           P  A  L+++ A   ++  A+  F+ +     D  L+N +I A  + S  A A  VF  +
Sbjct: 88  PVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSL 147

Query: 107 QEKGVF-TDNFTYPFLLKACN---GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
              G    D++++  LL A       +  H  Q+    + K G  G + V N+L+  Y K
Sbjct: 148 LASGSLRPDDYSFTALLSAAGHLPNISVRHCAQL-QCSVLKSGAGGVLSVSNALVALYMK 206

Query: 163 CG--------------------------VVG------VSLAKKLFMSMGERDIVSWNSMI 190
           C                           VVG      V  A+ +F  +  +  V WN+MI
Sbjct: 207 CEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMI 266

Query: 191 AGLVKGGELSEARRLFDEM----------------------------------------- 209
           +G V  G + EA  LF  M                                         
Sbjct: 267 SGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPN 326

Query: 210 --PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLL 267
             PE      N ++  Y+K G + +A  +F+ +  +++VSW+T++ GY +   ++ A  +
Sbjct: 327 FVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEV 386

Query: 268 FDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL 327
           F+ MP K  + W +++SGY   G +++A +L+++M    +KP D T    ++AC E G L
Sbjct: 387 FEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSL 446

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G ++H  + +  F+ + +  NAL+ MYA+CG++  A  +F  M   D VSWNAM+  L
Sbjct: 447 KHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISAL 506

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
             HG G +AL LF RM  EG  PD+ +F+ VL AC H+G +D+G QYF SM+RD+GI+P 
Sbjct: 507 GQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPG 566

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
            +HY  +IDLLGR+GR+ EA  L+++MP EP   IW  +L  CR    +EL     D L 
Sbjct: 567 EDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLF 626

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
           ++     G Y +LSN ++A G W   A VR  M+    +K  G S +E  N+VH F V D
Sbjct: 627 KMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGD 686

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGH 592
             HP++ ++Y+ +  +G  ++ +G+
Sbjct: 687 TKHPEAHKVYKFLEMVGARMRKLGY 711



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 89/221 (40%), Gaps = 37/221 (16%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L   KQL   +++L  +        LI+  A C  +  A  +F  + + D   +N +I 
Sbjct: 445 SLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMIS 504

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
           A  Q+    +A  +F  M  +G++ D  ++  +L ACN           H+ +   G+  
Sbjct: 505 ALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACN-----------HSGLVDEGF-- 551

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
                      Y +      S+ +   +  GE     +  +I  L + G + EAR L   
Sbjct: 552 ----------QYFE------SMKRDFGIIPGEDH---YTRLIDLLGRAGRIGEARDLIKT 592

Query: 209 MP-ERDAVSWNTILDGYAKAGEMNL----AFELFEKIPHRN 244
           MP E     W  IL G   +G+M L    A +LF+  P  +
Sbjct: 593 MPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHD 633


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 273/498 (54%), Gaps = 9/498 (1%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M   G+  DNFT+PF++KAC+    F     IH  + K GY   +F+ NSLI  Y KC  
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCD- 59

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-PERDAVSWNTILDGY 224
               L++++F  M +++ VSW+++I   ++     E   LF +M  E    S   IL+  
Sbjct: 60  -KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAM 118

Query: 225 AKAGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT 280
           A       A +++  +    +       S     +++ G +E+A+ LFD + +K LV W 
Sbjct: 119 ACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWA 178

Query: 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK- 339
             I  Y +  M  EA  L  QM   G+ PD  TL+ ++ AC+      L   VH  I   
Sbjct: 179 TTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTG 238

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
           + +     V  AL+D+Y KCGSL  A  VF+GM ++++++W+AM+ G  MHG G +AL L
Sbjct: 239 FFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNL 298

Query: 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459
           F +MK     PD  TFV +L AC+H+G + +G + F SM RD+G+ P+ EHY CM+D+LG
Sbjct: 299 FDQMK-ASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILG 357

Query: 460 RSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519
           R+G+L EA   ++ MPV PNA +WG LLGACR H  V+LAE V   L  L   + G Y +
Sbjct: 358 RAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVI 417

Query: 520 LSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQM 579
           L NI+  TG   +  ++R  MK    +K +G S +E+ N+++ F   D+ HP+++ IY  
Sbjct: 418 LYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSE 477

Query: 580 INTLGKDLKPVGHAAKLS 597
           +  L   ++  G+   ++
Sbjct: 478 LERLMDRIRQEGYTPDIN 495



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 170/368 (46%), Gaps = 19/368 (5%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           ++   ++K   Q   +I+  LI+    C +  L+ +VF+++ D +   ++ +I AC+Q+ 
Sbjct: 31  RIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSWSAIIGACLQDD 90

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
              + F +F  M  +G      +   +L A            ++ ++ + G   D  V +
Sbjct: 91  RCKEGFSLFRQMLSEG---SRPSRGAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQS 147

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           +    +++CG V V  A+KLF  +  +D+V+W + I   VK     EA  L  +M  +  
Sbjct: 148 AAAGMFARCGRVEV--ARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGI 205

Query: 215 VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW----------STMVWGYSKDGDMEMA 264
                 L G  +A     +F+L   I H  I +           + ++  Y K G +  A
Sbjct: 206 FPDAITLLGVIRACSTLASFQL-AHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYA 264

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +FD M  + ++ W+ +ISGY   G  +EA  L+DQM +A +KPD  T +SIL+AC+ S
Sbjct: 265 RKVFDGMQERNIITWSAMISGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHS 323

Query: 325 GLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNA 382
           GL+  G +   S+ + +           +VD+  + G LD A      M  + +   W A
Sbjct: 324 GLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGA 383

Query: 383 MLYGLAMH 390
           +L    +H
Sbjct: 384 LLGACRIH 391



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 65/256 (25%), Positives = 127/256 (49%), Gaps = 11/256 (4%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++  +   ++  +++  L  D  +        A C ++ +A K+F+ I   D+  + T I
Sbjct: 122 RSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTI 181

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            A V+  +  +A  +   M  +G+F D  T   +++AC+    F L  ++H +I    ++
Sbjct: 182 EAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFY 241

Query: 148 GDIF-VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             +  V  +LID Y KCG   ++ A+K+F  M ER+I++W++MI+G    G   EA  LF
Sbjct: 242 NQLLAVETALIDLYVKCG--SLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 207 DEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WSTMVWGYSKD 258
           D+M    + D +++ +IL   + +G +   +E F  +     V+     ++ MV    + 
Sbjct: 300 DQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRA 359

Query: 259 GDMEMAKLLFDRMPAK 274
           G ++ A    +RMP +
Sbjct: 360 GKLDEACDFIERMPVR 375


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 187/538 (34%), Positives = 285/538 (52%), Gaps = 56/538 (10%)

Query: 107 QEKGVFTDNFTYPFL---LKACNGKNWFH--LVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
             K  F    T   L   L  C+    F+  L QMI       G+  D F  + L+   +
Sbjct: 18  NHKPTFKPTITLSILETHLHNCHNLKQFNRILSQMILT-----GFISDTFAASRLLKFST 72

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----------- 210
               +G+  + ++F  +   +   WN+M+   ++     +A  L+  M            
Sbjct: 73  DSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTY 132

Query: 211 ----------------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
                                       + D    NT+++ YA  G M  A +LF++ P 
Sbjct: 133 PLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPV 192

Query: 243 RNIVSWSTMVWGYSKDGDMEM---AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
            + VSW++++ GY K GDM     A  LF+ M  K +V W+ +ISGY + GM +EA  ++
Sbjct: 193 LDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 252

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV----DM 355
            +M   G++ D+  ++S+L+ACA   ++  G  +H  + +   +   N+ NAL+    DM
Sbjct: 253 IEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDM 312

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           Y KCG ++NA+ VFNGM +K + SWNA++ GLA++G  E++L +FS MK+ G  P++ TF
Sbjct: 313 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITF 372

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           +GVL AC H G +D+G  +F SM   +GI P V+HYGCM+DLLGR+G L EA +L++SMP
Sbjct: 373 MGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP 432

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           + P+   WG LLGAC+KH   E+ E V   LI L+    G + +LSNIFA+ GDW  V  
Sbjct: 433 MAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLE 492

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593
           VR  MK+    K  G S +E +  VHEF   D+ HP   ++  M+N + K LK  G+A
Sbjct: 493 VRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYA 550



 Score =  171 bits (434), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/422 (28%), Positives = 206/422 (48%), Gaps = 52/422 (12%)

Query: 23  NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGL--AIKVFNDIQDPDV 80
           +LH C NL Q  ++ +Q+I      D + A +L+        +GL  ++++F+ I++ + 
Sbjct: 35  HLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNG 94

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
            ++NT++RA +Q++   +A  ++  M +  V  DN+TYP +++AC  +      + IH  
Sbjct: 95  FMWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDH 154

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K G+  D++V N+LI+ Y+ CG   +  A+KLF      D VSWNS++AG VK G++ 
Sbjct: 155 VLKVGFDSDVYVQNTLINMYAVCG--NMRDARKLFDESPVLDSVSWNSILAGYVKKGDMG 212

Query: 201 ---EARRLFDEMPERDAVSWNTILDGYAKAG----------EMN---------LAFELFE 238
              EA +LF+EM E+D VSW+ ++ GY + G          EMN         +   +  
Sbjct: 213 QVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 272

Query: 239 KIPHRNIVSWSTMVWG------------------------YSKDGDMEMAKLLFDRMPAK 274
              H +IV    M+ G                        Y K G +E A  +F+ M  K
Sbjct: 273 ACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEK 332

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
            +  W  +I G A  G+ + +  ++ +M+  G+ P++ T + +L AC   GL+  G    
Sbjct: 333 GVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHF 392

Query: 335 AS-INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQ 392
           AS I K+  + N      +VD+  + G L+ A  +   M    D+ +W A+L     HG 
Sbjct: 393 ASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGD 452

Query: 393 GE 394
            E
Sbjct: 453 TE 454



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 88/380 (23%), Positives = 158/380 (41%), Gaps = 58/380 (15%)

Query: 11  FSKRRLLEEKLQNLHK-CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAI 69
           F     ++  L N++  C N+   ++LF +   LD      I    +    + + M  A 
Sbjct: 160 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVME-AW 218

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129
           K+FN++ + D+  ++ LI    QN +  +A  +F++M   G+  D      +L AC   +
Sbjct: 219 KLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLS 278

Query: 130 WFHLVQMIHALIYKCGYFGDIFVPNSLI----DSYSKCGVVGVSLAKKLFMSMGERDIVS 185
                +MIH L+ + G    + + N+LI    D Y KCG V  +L  ++F  M E+ + S
Sbjct: 279 IVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENAL--EVFNGMEEKGVSS 336

Query: 186 WNSMIAGLVKGGELSEARRLFDEMP----------------------------------- 210
           WN++I GL   G +  +  +F EM                                    
Sbjct: 337 WNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMI 396

Query: 211 -----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEM- 263
                E +   +  ++D   +AG +N A +L E +P   ++ +W  ++    K GD EM 
Sbjct: 397 EKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMG 456

Query: 264 ---AKLLFDRMPAKTLVPWTIIISG-YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
               + L +  P      + +++S  +A KG  ++   +   M++ G+    G   S++ 
Sbjct: 457 ERVGRKLIELQPDHD--GFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGC--SLIE 512

Query: 320 ACAESGLLGLGMKVHASINK 339
           A         G K H  INK
Sbjct: 513 ANGVVHEFLAGDKTHPWINK 532


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 187/497 (37%), Positives = 277/497 (55%), Gaps = 41/497 (8%)

Query: 119 PFLLKAC----NGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           P ++KAC    +GK        IH L+ K G+  D+FV  SL+  YS+ G+VG   A+KL
Sbjct: 1   PPVVKACGDLLDGKK-------IHCLVLKLGFEWDVFVAASLVHMYSRFGLVGD--ARKL 51

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEM 230
           F  M  RD  SWN+MI+G  + G  +EA  + DEM     + DA++  ++L   A+ G++
Sbjct: 52  FDDMPARDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDI 111

Query: 231 -------------NLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
                         L FELF           + ++  Y+K G +  A+ +F  +  K +V
Sbjct: 112 LSGKLIHLYVIKHGLEFELFVS---------NALINMYAKFGSLGHAQKVFGLL-IKDVV 161

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEE-AGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
            W  +I+GYA+ G+A EA  +Y  MEE   + P+ GT +SIL A +  G L  GM++H  
Sbjct: 162 SWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQ 221

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           + K     +  V   L+DMY KCG LD+A+S+F  + +K+ V WNAM+    +HG GEKA
Sbjct: 222 VIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKA 281

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L LF  MK E   PD  TFV +L AC+H+G +      F  ME +YGI P ++HYGCM+D
Sbjct: 282 LELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVD 341

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           L GR+G L+ A   ++ MP++P+A  WG LL ACR H  +EL +   + L  +   + G 
Sbjct: 342 LFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGY 401

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
           Y +LSNI+A  G W  V +VR   +    +K  G SS+ ++N+V  F   +Q HPK E+I
Sbjct: 402 YVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEI 461

Query: 577 YQMINTLGKDLKPVGHA 593
           Y+ +  L   +K +G+ 
Sbjct: 462 YRELRDLTSKIKTIGYV 478



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 191/379 (50%), Gaps = 14/379 (3%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C +L   K++   ++KL  + D ++A  L+   +    +G A K+F+D+   D   +N +
Sbjct: 7   CGDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAM 66

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I    QN   A+A  +  +M+ +GV  D  T   +L  C         ++IH  + K G 
Sbjct: 67  ISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGL 126

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             ++FV N+LI+ Y+K G +G   A+K+F  +  +D+VSWN++I G  + G  SEA  ++
Sbjct: 127 EFELFVSNALINMYAKFGSLG--HAQKVF-GLLIKDVVSWNTLITGYAQNGLASEAIEVY 183

Query: 207 DEMPERDAV-----SWNTILDGYAKAGE----MNLAFELFEKIPHRNIVSWSTMVWGYSK 257
             M E + +     +W +IL  Y+  G     M +  ++ +   + ++   + ++  Y K
Sbjct: 184 LLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGK 243

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
            G ++ A  LF ++P K  VPW  +IS Y   G  ++A  L+ +M+   +KPD  T +S+
Sbjct: 244 CGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSL 303

Query: 318 LAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKK 375
           L+AC+ SGL+         +  +Y  K +      +VD++ + G L+ A +    M  + 
Sbjct: 304 LSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQP 363

Query: 376 DLVSWNAMLYGLAMHGQGE 394
           D  +W A+L    +HG  E
Sbjct: 364 DASAWGALLNACRIHGNIE 382


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/568 (32%), Positives = 309/568 (54%), Gaps = 13/568 (2%)

Query: 41  IKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100
           +KL L  D  +   L+   + C  +  A  +F+     +   +NT+I          +AF
Sbjct: 161 VKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAF 220

Query: 101 RVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
            +F +MQ ++ +  +  T   +L AC   +    ++ +H    + G+  D  V N  + +
Sbjct: 221 NLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAA 280

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV-SWN 218
           Y+KCG++    A+++F SM  + + SWN++I G  + G+  +A  L+ +M     V  W 
Sbjct: 281 YAKCGML--ICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWF 338

Query: 219 TI-----LDGYAKA---GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           TI        + K+   G+    F L   +   + +  S +   Y   G+   A+LLFD 
Sbjct: 339 TIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSL-YIHCGESSSARLLFDG 397

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
           M  K+ V W  +ISGY++ G+ ++A  L+ ++   G +P D  ++S+L AC++   L LG
Sbjct: 398 MEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG 457

Query: 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
            + H    K     +  V  + +DMYAK G +  + SVF+G+  KDL SWNA++    +H
Sbjct: 458 KETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVH 517

Query: 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
           G GE+++ LF RM+  G  PD +TF+G+L  C+HAG +++G++YF  M+  +GI P++EH
Sbjct: 518 GDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEH 577

Query: 451 YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
           Y C++D+LGR+GRL +ALRLV  MP +P++ +W +LL  CR    +E+ + V + L+ L+
Sbjct: 578 YACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELE 637

Query: 511 GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
             +  NY  LSN++A +G W+ V  VR  +K    QK +G S +E+  +VH F   D L 
Sbjct: 638 PKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLL 697

Query: 571 PKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           P+S+++      L K +  +G+    SA
Sbjct: 698 PQSKEMSMTWRKLEKKMCKIGYKPNTSA 725



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 144/498 (28%), Positives = 245/498 (49%), Gaps = 20/498 (4%)

Query: 36  LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSL 95
           +   +IK+ L  D ++   LI+       +  A+KVF+ +   ++  +N++I    +N  
Sbjct: 53  IHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGF 112

Query: 96  NAQAFRVFLDMQ--EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
           +   F + ++M   E+G+  D  T   +L  C  +    +   IH L  K G   D+ V 
Sbjct: 113 SKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVN 172

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           NSL+D YSKCG   ++ A+ LF     ++ VSWN+MI GL   G + EA  LF EM  ++
Sbjct: 173 NSLVDMYSKCGY--LTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQE 230

Query: 214 AVSWN--TILDGYAKAGEMNLAFELFE----KIPH---RNIVSWSTMVWGYSKDGDMEMA 264
            +  N  T+L+      E++    L E     I H    + +  +  V  Y+K G +  A
Sbjct: 231 DIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICA 290

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
           + +F  M  KT+  W  +I G A+ G  ++A  LY QM  +GL PD  T+ S+L A A  
Sbjct: 291 ERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHL 350

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
             L  G +VH  + ++  + ++ +  +L+ +Y  CG   +A  +F+GM +K  VSWNAM+
Sbjct: 351 KSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMI 410

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYG 443
            G + +G  E AL LF ++  +GF P     V VL AC+    +  G + + Y+++    
Sbjct: 411 SGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALK---A 467

Query: 444 ILPQVEHYGC-MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
           +L +     C  ID+  +SG +KE+  +   +    +   W  ++ A   H   E + E+
Sbjct: 468 LLMEDVFVACSTIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGEESIEL 526

Query: 503 LDCLIRLKGSDPGNYTML 520
            +  +R  G  P  +T +
Sbjct: 527 FE-RMRKVGQMPDGFTFI 543



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 216/459 (47%), Gaps = 47/459 (10%)

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFT-DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
           A  +N L + A  +F+ +     F  DNFT+P ++KAC G     L ++IH ++ K G  
Sbjct: 4   AVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLL 63

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D+FV N+LI  Y K G V    A K+F  M  R++VSWNS+I+G  + G   +   +  
Sbjct: 64  LDVFVGNALIAMYGKFGFVDA--AVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLV 121

Query: 208 EMPE------RDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSK 257
           EM         D  +  T+L   A+  ++ +   +     +     ++   +++V  YSK
Sbjct: 122 EMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSK 181

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLIS 316
            G +  A++LFD+   K  V W  +I G   KG   EA  L+ +M+ +  ++ ++ T+++
Sbjct: 182 CGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLN 241

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           IL AC E   L    ++H    ++ F+ +  V N  V  YAKCG L  A  VF  M  K 
Sbjct: 242 ILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKT 301

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF- 435
           + SWNA++ G A +G   KAL L+ +M   G  PD +T   +L A  H   +  G +   
Sbjct: 302 VNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHG 361

Query: 436 ----YSMERD----YGILPQVEHYG---------------------CMIDLLGRSGRLKE 466
               + +E D      +L    H G                      MI    ++G  ++
Sbjct: 362 FVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPED 421

Query: 467 ALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEV 502
           AL L + +     +P+ I   ++LGAC + +A+ L +E 
Sbjct: 422 ALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKET 460



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 173/367 (47%), Gaps = 16/367 (4%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   K+L    I+   Q D  +A   +++ A C  +  A +VF  ++   V+ +N LI  
Sbjct: 252 LRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGG 311

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
           C QN    +A  +++ M   G+  D FT   LL A          + +H  + + G   D
Sbjct: 312 CAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEID 371

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
            F+  SL+  Y  CG    S A+ LF  M E+  VSWN+MI+G  + G   +A    R+L
Sbjct: 372 SFIGISLLSLYIHCG--ESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKL 429

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFEL----FEKIPHRNIVSWSTMVWGYSKDGDM 261
             +  +   ++  ++L   ++   + L  E      + +   ++    + +  Y+K G +
Sbjct: 430 VSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCI 489

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           + ++ +FD +  K L  W  II+ Y   G  +E+  L+++M + G  PD  T I IL  C
Sbjct: 490 KESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVC 549

Query: 322 AESGLLGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-DL 377
           + +GL+  G+K    +  +     K     C  ++DM  + G LD+A+ + + M ++ D 
Sbjct: 550 SHAGLVEEGLKYFNEMQNFHGIEPKLEHYAC--VMDMLGRAGRLDDALRLVHEMPEQPDS 607

Query: 378 VSWNAML 384
             W+++L
Sbjct: 608 RVWSSLL 614



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 156/383 (40%), Gaps = 45/383 (11%)

Query: 7   APTWFSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66
            P WF+   LL   L + H  K+L   K++   +++  L+ D +I   L+S    C +  
Sbjct: 334 VPDWFTIGSLL---LASAH-LKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESS 389

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
            A  +F+ +++     +N +I    QN L   A  +F  +   G    +     +L AC+
Sbjct: 390 SARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACS 449

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
            ++   L +  H    K     D+FV  S ID Y+K G +  S  + +F  +  +D+ SW
Sbjct: 450 QQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKES--RSVFDGLKNKDLASW 507

Query: 187 NSMIAGLVKGGELSEARRLFDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           N++IA     G+  E+  LF+ M +     D  ++  IL   + AG +    + F ++ +
Sbjct: 508 NAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQN 567

Query: 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
                                    F  +  K L  +  ++      G   +A RL  +M
Sbjct: 568 -------------------------FHGIEPK-LEHYACVMDMLGRAGRLDDALRLVHEM 601

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
            E   +PD     S+L+ C   G L +G  V   + +   K N     +L ++YA  G  
Sbjct: 602 PE---QPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPK-NVENYVSLSNLYAGSGRW 657

Query: 363 DNAMSVFN-----GMTKKDLVSW 380
           D+   V       G+ K    SW
Sbjct: 658 DDVRRVRQMIKDIGLQKDAGCSW 680


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 189/515 (36%), Positives = 278/515 (53%), Gaps = 11/515 (2%)

Query: 86  LIRACVQNSLNAQAFRVFLDMQ-EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
           +I   V+NS    + RVF DM    G   D  T   +L A        L   I  L  KC
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
           G++  + +   LI  +SKCG   V +A+ LF  + ++D++S N+MI+G    GE  ++ R
Sbjct: 61  GFYSHVSLLTGLISLFSKCG--EVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVR 118

Query: 205 LFDEM-PERDAVSWNTI---LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG----YS 256
           LF E+    + VS +TI   +  Y+  G   L   +        IVS S++       Y 
Sbjct: 119 LFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYC 178

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           +  +M  A+ LFD    KTL  W  +ISG  + G+   A  L+  M++  + P+  T+ S
Sbjct: 179 RLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTS 238

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           IL+ACA+ G L LG  VH+ I   RF+ N  V  AL+DMYAKCGS+  A  +F+ M +K+
Sbjct: 239 ILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
            V+WNAM+ G  +HG G++AL LF  M      P   TF+ VL AC+HAG + +G   F+
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
           +M  D+G  P  EHY CM+D+LGR+G+LK+AL  +++MPVEP   +WG LLGAC  H   
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDT 418

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
            LA    + L  L   + G Y ++SNI++    + + A+VR   KK R  K  G + +E+
Sbjct: 419 NLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEI 478

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
               H F+  DQ HP+S+ IY  ++ L   +   G
Sbjct: 479 GQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAG 513



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 162/366 (44%), Gaps = 12/366 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+    IK        +   LIS  + C ++ +A  +F +I+  D+   N +I     N 
Sbjct: 52  QILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNG 111

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
               + R+F ++   G    + T   L+   +     +L   IH    K G      V  
Sbjct: 112 ETEDSVRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVST 171

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA 214
           +L   Y  C +  +  A++LF    E+ + SWN+MI+G  + G    A  LF  M + + 
Sbjct: 172 ALTTVY--CRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNV 229

Query: 215 ----VSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKL 266
               V+  +IL   A+ G ++L   +   I       N+   + ++  Y+K G + +A+ 
Sbjct: 230 NPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARE 289

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           LFD MP K  V W  +ISGY   G  +EA +L+  M  + +KP   T +S+L AC+ +GL
Sbjct: 290 LFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGL 349

Query: 327 LGLGMKV-HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAML 384
           +  G  + H  ++ + F+        +VD+  + G L  A+     M  +     W A+L
Sbjct: 350 VKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALL 409

Query: 385 YGLAMH 390
               +H
Sbjct: 410 GACMIH 415


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/565 (32%), Positives = 306/565 (54%), Gaps = 13/565 (2%)

Query: 40   IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
            I+KL       +   LIS  A    +G A+ VFN +   D   +N++I  C  N LN++A
Sbjct: 443  IVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEA 502

Query: 100  FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
              +F+ M  +G   D+ T   +L AC    ++   +++H    K G  G+  + N+L+D 
Sbjct: 503  IELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDM 562

Query: 160  YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAV 215
            YS C         ++F SMG++++VSW +MI   ++ G   +   L  EM       D  
Sbjct: 563  YSNCS--DWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVF 620

Query: 216  SWNTILDGYA-----KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
            +  + L  +A     K G+    + +   +     V+ + M   Y K  ++E A+L+FDR
Sbjct: 621  AVTSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEM-YVKCRNVEEARLIFDR 679

Query: 271  MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG 330
            +  K ++ W  +I GY+      E+  L+  M     +P+  T+  IL A A    L  G
Sbjct: 680  VTNKDVISWNTLIGGYSRNNFPNESFSLFSDML-LQFRPNAVTMTCILPAAASISSLERG 738

Query: 331  MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH 390
             ++HA   +  F  ++   NALVDMY KCG+L  A  +F+ +TKK+L+SW  M+ G  MH
Sbjct: 739  REIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMH 798

Query: 391  GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH 450
            G G+ A+ LF +M+  G  PD  +F  +L AC H+G   +G ++F +M+++Y I P+++H
Sbjct: 799  GFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKH 858

Query: 451  YGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
            Y C++DLL R+G LKEAL  ++SMP+EP++ IW +LL  CR H  V+LAE+V D + +L+
Sbjct: 859  YTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLE 918

Query: 511  GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLH 570
              + G Y +L+NI+A    W  V  ++ ++     ++ +G S +EV ++VH F   ++ H
Sbjct: 919  PENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNH 978

Query: 571  PKSEQIYQMINTLGKDLKPVGHAAK 595
            P   +I + ++ + + ++  GH  K
Sbjct: 979  PDWNRIAEFLDDVARRMRQEGHDPK 1003



 Score =  174 bits (442), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 146/512 (28%), Positives = 238/512 (46%), Gaps = 50/512 (9%)

Query: 51  IAPKLISSLALCRQMGLAIKVFNDI--QDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE 108
           +  +L+ +   C  +G A  VF+ +  Q  DV ++ +L+ A  +     +A  +F  MQ 
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
            GV  D      +LK  +        ++IH L+ K G      V N+LI  YS+CG +  
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRM-- 255

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGY 224
             A ++F SM  RD +SWNSMI G    G    A  LF +M     E  +V+  ++L   
Sbjct: 256 EDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC 315

Query: 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWG--------------------YSKDGDMEMA 264
           A      L + L  K  H   V  S ++WG                    Y K GDM  A
Sbjct: 316 A-----GLGYGLIGKAVHGYSVK-SGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASA 369

Query: 265 KLLFDRMPAKTLVP-WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA---- 319
           + +FD M +K  V  W +I+ GYA+ G  +E+  L+ QM E G+ PD+  +  +L     
Sbjct: 370 RRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITC 429

Query: 320 -ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
            +CA  GL+      H  I K  F     VCNAL+  YAK   + +A+ VFN M ++D +
Sbjct: 430 LSCARDGLVA-----HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTI 484

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG-VQYFYS 437
           SWN+++ G + +G   +A+ LF RM  +G   D  T + VL AC  + +   G V + YS
Sbjct: 485 SWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYS 544

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           ++   G++ +      ++D+       +   ++ +SM  + N + W  ++ +  +    +
Sbjct: 545 VKT--GLIGETSLANALLDMYSNCSDWQSTNQIFRSMG-QKNVVSWTAMITSYMRAGLFD 601

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
               +L  ++ L G  P  + + S + A  GD
Sbjct: 602 KVAGLLQEMV-LDGIRPDVFAVTSALHAFAGD 632



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 134/511 (26%), Positives = 218/511 (42%), Gaps = 75/511 (14%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L + + +   + KL L +   +A  LI+  + C +M  A +VF+ +   D   +N++I 
Sbjct: 219 SLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIG 278

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            C  N  +  A  +F  M  +G    + T   +L AC G  +  + + +H    K G   
Sbjct: 279 GCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLW 338

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKL-FMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            +    S ID          +L  KL FM                 VK G+++ ARR+FD
Sbjct: 339 GLDSVQSGIDD--------AALGSKLVFM----------------YVKCGDMASARRVFD 374

Query: 208 EMPERDAVS-WNTILDGYAKAGEMNLAFELFEK--------------------------- 239
            M  +  V  WN I+ GYAK GE   +  LF +                           
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCAR 434

Query: 240 ---IPHRNIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
              + H  IV           + ++  Y+K   +  A L+F+RMP +  + W  +ISG +
Sbjct: 435 DGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCS 494

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
             G+  EA  L+ +M   G + D  TL+S+L ACA+S     G  VH    K      T+
Sbjct: 495 SNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETS 554

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG 407
           + NAL+DMY+ C    +   +F  M +K++VSW AM+      G  +K  GL   M  +G
Sbjct: 555 LANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDG 614

Query: 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY----GCMIDLLGRSGR 463
             PD +     L    HA   D+ ++   S+   Y I   +E        ++++  +   
Sbjct: 615 IRPDVFAVTSAL----HAFAGDESLKQGKSVH-GYTIRNGMEKLLPVANALMEMYVKCRN 669

Query: 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           ++EA RL+       + I W TL+G   ++N
Sbjct: 670 VEEA-RLIFDRVTNKDVISWNTLIGGYSRNN 699



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 174/408 (42%), Gaps = 77/408 (18%)

Query: 177 SMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--DAVSWNTILDGYAKAGEMNLAF 234
           + G +  V    ++   +K G+L EAR +FD MP +  D   W +++  YAKAG+   A 
Sbjct: 130 ATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAV 189

Query: 235 ELFEKI------PHRNIVSW---------------------------------STMVWGY 255
            LF ++      P  + VS                                  + ++  Y
Sbjct: 190 SLFRQMQCCGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVY 249

Query: 256 SKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
           S+ G ME A  +FD M  +  + W  +I G    G    A  L+ +M   G +    T++
Sbjct: 250 SRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVL 309

Query: 316 SILAACAESGLLGLGMKVHASINKYRFKC--------------NTNVCNALVDMYAKCGS 361
           S+L ACA  G   +G  VH     Y  K               +  + + LV MY KCG 
Sbjct: 310 SVLPACAGLGYGLIGKAVHG----YSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGD 365

Query: 362 LDNAMSVFNGMTKKDLVS-WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL- 419
           + +A  VF+ M+ K  V  WN ++ G A  G+ E++L LF +M + G  PD++    +L 
Sbjct: 366 MASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLK 425

Query: 420 ----CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
                +C   G +  G    Y ++  +G   Q      +I    +S  + +A+ +   MP
Sbjct: 426 CITCLSCARDGLVAHG----YIVKLGFG--AQCAVCNALISFYAKSNMIGDAVLVFNRMP 479

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLS 521
            + + I W +++  C  +    L  E ++  IR+  +G +  + T+LS
Sbjct: 480 RQ-DTISWNSVISGCSSNG---LNSEAIELFIRMWTQGQELDSVTLLS 523



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 145/308 (47%), Gaps = 27/308 (8%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L Q K +    I+  +++   +A  L+     CR +  A  +F+ + + DV  +NTLI
Sbjct: 633 ESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLI 692

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDN-FTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
               +N+   ++F +F DM  +  F  N  T   +L A    +     + IHA   + G+
Sbjct: 693 GGYSRNNFPNESFSLFSDMLLQ--FRPNAVTMTCILPAAASISSLERGREIHAYALRRGF 750

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D +  N+L+D Y KCG + V  A+ LF  + +++++SW  MIAG    G    A  LF
Sbjct: 751 LEDSYASNALVDMYVKCGALLV--ARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALF 808

Query: 207 DEMP----ERDAVSWNTIL-----DGYAKAGE-----MNLAFELFEKIPHRNIVSWSTMV 252
           ++M     E DA S++ IL      G A  G      M   +++  K+ H     ++ +V
Sbjct: 809 EQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKH-----YTCIV 863

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVP-WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              S+ GD++ A    + MP +     W  ++ G       K A ++ D++ +  L+P++
Sbjct: 864 DLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFK--LEPEN 921

Query: 312 GTLISILA 319
                +LA
Sbjct: 922 TGYYVLLA 929


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 192/575 (33%), Positives = 304/575 (52%), Gaps = 10/575 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+   QL    +   L+ D  +A  L++  + C+ +  A K+F+ +   D+  +N +I  
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISG 234

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            VQN L  +A  +F  M   G+  D+ T+   L   N        + IH  I +     D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
           +F+ ++LID Y KC    V +A+K        D V   +MI+G V  G+  EA    R L
Sbjct: 295 VFLKSALIDIYFKCR--DVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWL 352

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
             E  +  +V++++I   +A    +NL  EL   I    +       S ++  Y+K G +
Sbjct: 353 VQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRL 412

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           ++A  +F+R+  K  + W  +I+  ++ G   EA  L+ QM   G + D  ++   L+AC
Sbjct: 413 DLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSAC 472

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G ++H  + K   + +    ++L+DMYAKCG+L+ +  VF+ M +K+ VSWN
Sbjct: 473 ANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWN 532

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +++     HG  ++ L LF  M   G  PD  TF+G++ AC HAG +D+G++Y++ M  +
Sbjct: 533 SIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEE 592

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI  ++EHY C+ D+ GR+GRL EA   + SMP  P+A +WGTLLGAC  H  VELAE 
Sbjct: 593 YGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEV 652

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L  L   + G Y +L+N+ A  G W KV  VR  MK+   +K  G S +EV+N  H
Sbjct: 653 ASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATH 712

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            F   D  HP + QIY ++++L  +LK  G+  +L
Sbjct: 713 MFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQL 747



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 247/514 (48%), Gaps = 14/514 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K++   K +   +  + L+ D ++   LI   A    +  A  +F++I   D  L+N ++
Sbjct: 72  KSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVML 131

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              V+N  +  A ++FL+M+   +  ++ T+  +L  C  +    L   +H +   CG  
Sbjct: 132 NGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLE 191

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D  V N+L+  YSKC    +  A+KLF ++ + D+VSWN +I+G V+ G + EA  LF 
Sbjct: 192 LDSPVANTLLAMYSKCQC--LQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFR 249

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWGYSKDG 259
            M     + D++++ + L    +   +    E+   I    +V      S ++  Y K  
Sbjct: 250 GMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCR 309

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D+EMA+    +  +   V  T +ISGY   G  KEA   +  + +  +KP   T  SI  
Sbjct: 310 DVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           A A    L LG ++H SI K +     +V +A++DMYAKCG LD A  VFN +T+KD + 
Sbjct: 370 AFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC 429

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+M+   + +G+  +A+ LF +M  EG   D  +  G L AC +   +  G +    M 
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           +   +   +     +ID+  + G L  + R+   M  E N + W +++ A   H  ++  
Sbjct: 490 KG-PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-EKNEVSWNSIISAYGNHGDLKEC 547

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
             +   ++R  G  P + T L  I +A G   +V
Sbjct: 548 LALFHEMLR-NGIQPDHVTFLG-IISACGHAGQV 579



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/440 (27%), Positives = 209/440 (47%), Gaps = 24/440 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F  +Q      +N +IR          A   +L M   GV  D +T+P+++KAC G
Sbjct: 11  AKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCG 70

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                + +++H  +   G   D+FV +SLI  Y++ G   +S A+ LF ++ ++D V WN
Sbjct: 71  LKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENG--HLSDAQYLFDNIPQKDSVLWN 128

Query: 188 SMIAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
            M+ G VK G+   A ++F EM   +    +V++  +L   A    ++L  +L     H 
Sbjct: 129 VMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL-----HG 183

Query: 244 NIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
             V           +T++  YSK   ++ A+ LFD +P   LV W  IISGY + G+  E
Sbjct: 184 IAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGE 243

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L+  M  AG+KPD  T  S L    E   L    ++H  I ++    +  + +AL+D
Sbjct: 244 AEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALID 303

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           +Y KC  ++ A       +  D V    M+ G  ++G+ ++AL  F  +  E   P   T
Sbjct: 304 IYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVT 363

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQS 473
           F  +  A      ++ G +   S+ +    L +  H G  ++D+  + GRL  A R+   
Sbjct: 364 FSSIFPAFAGLAALNLGKELHGSIIKTK--LDEKCHVGSAILDMYAKCGRLDLACRVFNR 421

Query: 474 MPVEPNAIIWGTLLGACRKH 493
           +  E +AI W +++ +C ++
Sbjct: 422 I-TEKDAICWNSMITSCSQN 440



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 120/267 (44%), Gaps = 3/267 (1%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y + G ++ AK LF  +       W  +I G+   G    A   Y +M  AG+ PD  T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
             ++ AC     + +G  VH ++N    K +  V ++L+ +YA+ G L +A  +F+ + +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD V WN ML G   +G    A+ +F  M+     P+  TF  VL  C     +D G Q 
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ- 180

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
            + +    G+         ++ +  +   L+ A +L  ++P + + + W  ++    ++ 
Sbjct: 181 LHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLP-QSDLVSWNGIISGYVQNG 239

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLS 521
            +  AE +   +I   G  P + T  S
Sbjct: 240 LMGEAEHLFRGMIS-AGIKPDSITFAS 265



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY + GSL +A ++F  +      +WN M+ G  M GQ   AL  + +M   G  PDKYT
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F  V+ AC     +  G +  +      G+   V     +I L   +G L +A  L  ++
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 475 PVEPNAIIWGTLLGACRKH----NAVELAEEV 502
           P + ++++W  +L    K+    NA+++  E+
Sbjct: 120 P-QKDSVLWNVMLNGYVKNGDSGNAIKIFLEM 150


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 186/536 (34%), Positives = 291/536 (54%), Gaps = 36/536 (6%)

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSL 156
           +A   +++M   G   DNF +P +LKA +G       + IHA   K GY    + V N+L
Sbjct: 75  EAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTL 134

Query: 157 IDSYSKCGVVG------------------VSLAKKLFMSMGERDIVSWNSMIAGLVKGGE 198
           ++ Y KCG +G                  V  +K LF S  +RD+VSWN+MI+   +   
Sbjct: 135 VNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDR 194

Query: 199 LSEARRLFD----EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV-----SWS 249
            SEA   F     E  E D V+  ++L   +    +++  E+   +   N +       S
Sbjct: 195 FSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGS 254

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM-EEAGLK 308
            +V  Y     +E  + +FD +  + +  W  +ISGYA  G+ ++A  L+ +M + AGL 
Sbjct: 255 ALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLL 314

Query: 309 PDDGTLISILAACAES-GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           P+  T+ S++ AC  S   +  G ++HA   +     +  V +ALVDMYAKCG L+ +  
Sbjct: 315 PNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRR 374

Query: 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFG----PDKYTFVGVLCAC 422
           VFN M  K++++WN ++    MHG+GE+AL LF  M  E G G    P++ TF+ V  AC
Sbjct: 375 VFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAAC 434

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI- 481
           +H+G I +G+  FY M+ D+G+ P  +HY C++DLLGR+G+L+EA  LV +MP E + + 
Sbjct: 435 SHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVG 494

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
            W +LLGACR H  VEL E     L+ L+ +   +Y +LSNI+++ G WNK   VR  M+
Sbjct: 495 AWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMR 554

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597
           +   +K  G S +E  +EVH+F   D  HP+SEQ++  + TL + ++  G+    S
Sbjct: 555 QMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTS 610



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 164/350 (46%), Gaps = 35/350 (10%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           +F    D D+  +NT+I +  Q+   ++A   F  M  +GV  D  T   +L AC+    
Sbjct: 170 LFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLER 229

Query: 131 FHLVQMIHALIYKCG-YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
             + + IHA + +      + FV ++L+D Y  C    V   +++F  +  R I  WN+M
Sbjct: 230 LDVGKEIHAYVLRNNDLIENSFVGSALVDMY--CNCRQVESGRRVFDHILGRRIELWNAM 287

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTI------------LDGYAKAGEMNLAFELF 237
           I+G  + G   +A  LF EM +   +  NT             L   AK  E++ A+ + 
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIH-AYAIR 346

Query: 238 EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
             +   +I   S +V  Y+K G + +++ +F+ MP K ++ W ++I      G  +EA  
Sbjct: 347 NMLA-SDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALE 405

Query: 298 LYDQM-EEAG----LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV---- 348
           L+  M  EAG     KP++ T I++ AAC+ SGL+  G+ +      YR K +  V    
Sbjct: 406 LFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF-----YRMKHDHGVEPTS 460

Query: 349 --CNALVDMYAKCGSLDNAMSVFNGMTKK--DLVSWNAMLYGLAMHGQGE 394
                +VD+  + G L+ A  + N M  +   + +W+++L    +H   E
Sbjct: 461 DHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVE 510



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/419 (22%), Positives = 182/419 (43%), Gaps = 73/419 (17%)

Query: 28  KNLNQTKQLFAQIIKL-DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           + L+  K++ A +++  DL  + ++   L+     CRQ+    +VF+ I    + L+N +
Sbjct: 228 ERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAM 287

Query: 87  IRACVQNSLNAQAFRVFLDM-QEKGVFTDNFTYPFLLKAC-NGKNWFHLVQMIHALIYKC 144
           I    +N L+ +A  +F++M +  G+  +  T   ++ AC +        + IHA   + 
Sbjct: 288 ISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRN 347

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204
               DI V ++L+D Y+KCG   ++L++++F  M  +++++WN +I      G+  EA  
Sbjct: 348 MLASDITVGSALVDMYAKCGC--LNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALE 405

Query: 205 LFDEM---------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS-----WST 250
           LF  M          + + V++ T+    + +G ++    LF ++ H + V      ++ 
Sbjct: 406 LFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYAC 465

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAK--TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
           +V    + G +E A  L + MPA+   +  W+ ++           A R++  +E     
Sbjct: 466 VVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLG----------ACRIHQNVE----- 510

Query: 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368
                    L   A   LL L   V    + Y           L ++Y+  G  + AM V
Sbjct: 511 ---------LGEVAAKNLLHLEPNV---ASHYVL---------LSNIYSSAGLWNKAMEV 549

Query: 369 FN-----GMTKKDLVSW-------NAMLYGLAMHGQGEKALG----LFSRMKDEGFGPD 411
                  G+ K+   SW       +  + G   H Q E+  G    L  +M+ EG+ PD
Sbjct: 550 RKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPD 608



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 115/271 (42%), Gaps = 22/271 (8%)

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P+++   W   +         +EA   Y +M  +G +PD+    ++L A +    L  G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 332 KVHASINKYRF-KCNTNVCNALVDMYAKCGSL--------------------DNAMSVFN 370
           ++HA+  K+ +   +  V N LV+MY KCG +                    D++ ++F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 371 GMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDK 430
               +D+VSWN M+   +   +  +AL  F  M  EG   D  T   VL AC+H   +D 
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 431 GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGAC 490
           G +    + R+  ++        ++D+     +++   R+   + +     +W  ++   
Sbjct: 233 GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI-LGRRIELWNAMISGY 291

Query: 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            ++   E A  +   +I++ G  P   TM S
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMAS 322



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 75/355 (21%), Positives = 142/355 (40%), Gaps = 53/355 (14%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           +H    + + K++ A  I+  L  D  +   L+   A C  + L+ +VFN++ + +V  +
Sbjct: 328 VHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITW 387

Query: 84  NTLIRACVQNSLNAQAFRVFLDM-QEKG----VFTDNFTYPFLLKACN-------GKNWF 131
           N LI AC  +    +A  +F +M  E G       +  T+  +  AC+       G N F
Sbjct: 388 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 447

Query: 132 HLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM-GERDIV-SWNSM 189
           + ++  H +     ++        ++D   + G   +  A +L  +M  E D V +W+S+
Sbjct: 448 YRMKHDHGVEPTSDHYA------CVVDLLGRAG--QLEEAYELVNTMPAEFDKVGAWSSL 499

Query: 190 IAGL-----VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244
           +        V+ GE++ A+ L    P   A  +  + + Y+ AG  N A E+ + +    
Sbjct: 500 LGACRIHQNVELGEVA-AKNLLHLEPNV-ASHYVLLSNIYSSAGLWNKAMEVRKNMRQMG 557

Query: 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304
           +       W   +D   E+ K     M      P +  + G+ E         L ++M +
Sbjct: 558 VKKEPGCSWIEFRD---EVHKF----MAGDVSHPQSEQLHGFLET--------LSEKMRK 602

Query: 305 AGLKPDDGTLI---------SILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350
            G  PD   ++         ++L   +E   +  G+         R   N  VCN
Sbjct: 603 EGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCN 657


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 191/575 (33%), Positives = 304/575 (52%), Gaps = 10/575 (1%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L+   QL    +   L+ D  +A  L++  + C+ +  A K+F+     D+  +N +I  
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISG 234

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
            VQN L  +A  +F  M   G+  D+ T+   L   N        + IH  I +     D
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLD 294

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA----RRL 205
           +F+ ++LID Y KC    V +A+K+       D V   +MI+G V  G+  EA    R L
Sbjct: 295 VFLKSALIDIYFKCR--DVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWL 352

Query: 206 FDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS----WSTMVWGYSKDGDM 261
             E  +  +V++++I   +A    +NL  EL   I    +       S ++  Y+K G +
Sbjct: 353 VQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRL 412

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           ++A  +F+R+  K  + W  +I+  ++ G   EA  L+ QM   G + D  ++   L+AC
Sbjct: 413 DLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSAC 472

Query: 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWN 381
           A    L  G ++H  + K   + +    ++L+DMYAKCG+L+ +  VF+ M +++ VSWN
Sbjct: 473 ANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWN 532

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           +++     HG  ++ L LF  M   G  PD  TF+G++ AC HAG +D+G++Y++ M  +
Sbjct: 533 SIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEE 592

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501
           YGI  ++EHY C+ D+ GR+GRL EA   + SMP  P+A +WGTLLGAC  H  VELAE 
Sbjct: 593 YGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLGACHIHGNVELAEV 652

Query: 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561
               L  L   + G Y +L+N+ A  G W KV  VR  MK+   +K  G S +EV+N  H
Sbjct: 653 ASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKVPGYSWIEVNNATH 712

Query: 562 EFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKL 596
            F   D  HP + QIY ++++L  +LK  G+  +L
Sbjct: 713 MFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQL 747



 Score =  188 bits (477), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 247/514 (48%), Gaps = 14/514 (2%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           K++   K +   +  + L+ D ++   LI   A    +  A  +F++I   D  L+N ++
Sbjct: 72  KSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVML 131

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
              V+N  +  A ++FL+M+   +  ++ T+  +L  C  +    L   +H +   CG  
Sbjct: 132 NGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLE 191

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
            D  V N+L+  YSKC    +  A+KLF +  + D+VSWN +I+G V+ G + EA  LF 
Sbjct: 192 LDSPVANTLLAMYSKCQC--LQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFR 249

Query: 208 EM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV----SWSTMVWGYSKDG 259
            M     + D++++ + L    +   +    E+   I    +V      S ++  Y K  
Sbjct: 250 GMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCR 309

Query: 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319
           D+EMA+ +  +  +   V  T +ISGY   G  KEA   +  + +  +KP   T  SI  
Sbjct: 310 DVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFP 369

Query: 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           A A    L LG ++H SI K +     +V +A++DMYAKCG LD A  VFN +T+KD + 
Sbjct: 370 AFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAIC 429

Query: 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439
           WN+M+   + +G+  +A+ LF +M  EG   D  +  G L AC +   +  G +    M 
Sbjct: 430 WNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMI 489

Query: 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
           +   +   +     +ID+  + G L  + R+   M  E N + W +++ A   H  ++  
Sbjct: 490 KG-PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQ-ERNEVSWNSIISAYGNHGDLKEC 547

Query: 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533
             +   ++R  G  P + T L  I +A G   +V
Sbjct: 548 LALFHEMLR-NGIQPDHVTFL-GIISACGHAGQV 579



 Score =  158 bits (399), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 210/440 (47%), Gaps = 24/440 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A  +F  +Q      +N +IR          A   +L M   GV  D +T+P+++KAC G
Sbjct: 11  AKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTFPYVVKACCG 70

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                + +++H  +   G   D+FV +SLI  Y++ G   +S A+ LF ++ ++D V WN
Sbjct: 71  LKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENG--HLSDAQYLFDNIPQKDSVLWN 128

Query: 188 SMIAGLVKGGELSEARRLFDEMPERD----AVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
            M+ G VK G+   A ++F EM   +    +V++  +L   A    ++L  +L     H 
Sbjct: 129 VMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL-----HG 183

Query: 244 NIVSW---------STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
             VS          +T++  YSK   ++ A+ LFD  P   LV W  IISGY + G+  E
Sbjct: 184 IAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGE 243

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L+  M  AG+KPD  T  S L    E   L    ++H  I ++    +  + +AL+D
Sbjct: 244 AEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALID 303

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           +Y KC  ++ A  +    +  D V    M+ G  ++G+ ++AL  F  +  E   P   T
Sbjct: 304 IYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVT 363

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-CMIDLLGRSGRLKEALRLVQS 473
           F  +  A      ++ G +   S+ +    L +  H G  ++D+  + GRL  A R+   
Sbjct: 364 FSSIFPAFAGLAALNLGKELHGSIIKTK--LDEKCHVGSAILDMYAKCGRLDLACRVFNR 421

Query: 474 MPVEPNAIIWGTLLGACRKH 493
           +  E +AI W +++ +C ++
Sbjct: 422 I-TEKDAICWNSMITSCSQN 440



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 119/267 (44%), Gaps = 3/267 (1%)

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y + G ++ AK LF  +       W  +I G+   G    A   Y +M  AG+ PD  T 
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
             ++ AC     + +G  VH ++N    K +  V ++L+ +YA+ G L +A  +F+ + +
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           KD V WN ML G   +G    A+ +F  M+     P+  TF  VL  C     +D G Q 
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQ- 180

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
            + +    G+         ++ +  +   L+ A +L  + P + + + W  ++    ++ 
Sbjct: 181 LHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSP-QSDLVSWNGIISGYVQNG 239

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLS 521
            +  AE +   +I   G  P + T  S
Sbjct: 240 LMGEAEHLFRGMIS-AGIKPDSITFAS 265



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 6/152 (3%)

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY + GSL +A ++F  +      +WN M+ G  M GQ   AL  + +M   G  PDKYT
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F  V+ AC     +  G +  +      G+   V     +I L   +G L +A  L  ++
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 475 PVEPNAIIWGTLLGACRKH----NAVELAEEV 502
           P + ++++W  +L    K+    NA+++  E+
Sbjct: 120 P-QKDSVLWNVMLNGYVKNGDSGNAIKIFLEM 150


>gi|357118286|ref|XP_003560887.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Brachypodium distachyon]
          Length = 676

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 184/560 (32%), Positives = 303/560 (54%), Gaps = 47/560 (8%)

Query: 64  QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN------FT 117
            +  A ++F+++   D   +NTL+ A V+  L  +A ++F +M ++ V + N      F+
Sbjct: 110 HLAAARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFS 169

Query: 118 YPFLLKACNG------KNWFHLVQMIHALIYKCGYFGD-----------------IFVPN 154
              + KA +       K+   L  ++   I K G   +                 +   N
Sbjct: 170 AGQVNKALDMFDAMPVKDSASLGTLVSGFI-KNGRLHEAEELLTKRLRVTDMDEAVDAYN 228

Query: 155 SLIDSYSKCGVVGVSLAKKLF--------------MSMGERDIVSWNSMIAGLVKGGELS 200
           +LI +Y + G   VS A++LF              M +  R++VSWNSM+   ++ G++ 
Sbjct: 229 TLIAAYGQVG--RVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVC 286

Query: 201 EARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260
            AR +F+EMP++D VSWNT++ GY K  +M  A +LF ++P  +IVSW+ ++ G+++ GD
Sbjct: 287 SAREIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGD 346

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +E A+  FDRMP +  + W  +ISGY + G    A  L+ +M EAG  PD  T  S+LAA
Sbjct: 347 VEHARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAA 406

Query: 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           CA   +L LG ++H  I K  F  +T   NAL+ MY++ G+L +A ++F  M +KDLVSW
Sbjct: 407 CASLPMLRLGAQLHQLIEK-SFLPDTATSNALMTMYSRGGALTDAEAIFKQMPQKDLVSW 465

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
           NA++ G   HG   +AL LF  M+     P   TF+ +L AC +AG + +G   F +M  
Sbjct: 466 NALIGGYEHHGCATEALQLFEDMRSARVMPTHITFISLLSACGNAGLVSEGWMVFDTMIH 525

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
           +Y I  ++EHY  +++L+GR G+L +AL ++ SMP+ P+  +WG  LGAC       LA 
Sbjct: 526 EYSIAARIEHYAALVNLIGRHGQLDDALEVINSMPIAPDRSVWGAFLGACTAKKNELLAH 585

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEV 560
                L ++       Y ++ N+ A  G W   + VR +M++    K  G S +++ ++V
Sbjct: 586 MAAKALSKIDPESSAPYVLIHNLHAHEGRWGSASVVREEMEQQGIHKHPGYSWIDLHDKV 645

Query: 561 HEFSVCDQLHPKSEQIYQMI 580
           H F   D  HP +++I+ ++
Sbjct: 646 HVFISGDTSHPLTQEIFSVL 665



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/522 (23%), Positives = 212/522 (40%), Gaps = 140/522 (26%)

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK---AGEMN 231
           F ++  R +V+WNS +A L +G +++ AR  F  MP RDAVSWNT+L  Y++   +  + 
Sbjct: 53  FDALPARSVVTWNSFLAALARGRDVAAARAFFASMPVRDAVSWNTLLAAYSRSLNSEHLA 112

Query: 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM 291
            A  LF+++P R+ V+W+T++  Y + G M  A+ LFD MP + +  W  +++G+   G 
Sbjct: 113 AARRLFDEMPQRDAVTWNTLLGAYVRRGLMVEAEKLFDEMPQRNVASWNTMVTGFFSAGQ 172

Query: 292 AKEAARLYDQM---EEAGLKPDDGTLIS-------------------------------- 316
             +A  ++D M   + A L    GTL+S                                
Sbjct: 173 VNKALDMFDAMPVKDSASL----GTLVSGFIKNGRLHEAEELLTKRLRVTDMDEAVDAYN 228

Query: 317 -ILAACAESGLLGLGMKVHASINKYRFKCNTN----------VCNALVDMYAKCGSLDNA 365
            ++AA  + G +    ++   I + +++C TN            N+++  Y + G + +A
Sbjct: 229 TLIAAYGQVGRVSDARRLFDMIPRGQYQCKTNNMRVFARNVVSWNSMMTCYIRTGDVCSA 288

Query: 366 MSVFNGMTKKDLVSWNAM-------------------------------LYGLAMHGQGE 394
             +FN M  KDLVSWN M                               + G    G  E
Sbjct: 289 REIFNEMPDKDLVSWNTMIAGYTKVSDMEEAEKLFWEMPDPDIVSWNLIIRGFTQKGDVE 348

Query: 395 KALGLFSRMKDEGF-------------------------------GPDKYTFVGVLCACT 423
            A G F RM + G                                 PD++TF  VL AC 
Sbjct: 349 HARGFFDRMPERGTISWNTMISGYEQNGHYDGAIELFTKMLEAGGTPDRHTFSSVLAACA 408

Query: 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIW 483
               +  G Q    +E+ +  LP       ++ +  R G L +A  + + MP + + + W
Sbjct: 409 SLPMLRLGAQLHQLIEKSF--LPDTATSNALMTMYSRGGALTDAEAIFKQMP-QKDLVSW 465

Query: 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543
             L+G    H     A ++ + + R     P + T +S + +A G+   V+         
Sbjct: 466 NALIGGYEHHGCATEALQLFEDM-RSARVMPTHITFIS-LLSACGNAGLVSE-------- 515

Query: 544 RAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGK 585
                     +  D  +HE+S+  ++    E    ++N +G+
Sbjct: 516 --------GWMVFDTMIHEYSIAARI----EHYAALVNLIGR 545


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/406 (37%), Positives = 251/406 (61%), Gaps = 2/406 (0%)

Query: 189 MIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNL-AFELFEKIPHRNI-V 246
           M A     G + ++R++F++MPE + +SW  I+  Y ++GE +  A ELF K+   ++  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
             ++++  Y++ G ME A+  FD +  K LV +  I+ GYA+   ++EA  L++++ + G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
           +     T  S+L+  A  G +G G ++H  + K  +K N  +CNAL+ MY++CG+++ A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VFN M  ++++SW +M+ G A HG   +AL +F +M + G  P++ T+V VL AC+H G
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTL 486
            I +G ++F SM +++GI+P++EHY CM+DLLGRSG L EA+  + SMP+  +A++W TL
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTL 300

Query: 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546
           LGACR H   EL     + ++  +  DP  Y +LSN+ A+ G W  V  +R  MK+    
Sbjct: 301 LGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLI 360

Query: 547 KPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           K +G S +EV+N VH F V +  HP++ QIYQ ++ L   +K +G+
Sbjct: 361 KEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGY 406



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 138/312 (44%), Gaps = 79/312 (25%)

Query: 160 YSKCGVVG-VSLAKKLFMSMGERDIVSWNSMIAGLVKGGE-------------------- 198
           Y+KC   G V  ++K+F  M E +++SW ++I   V+ GE                    
Sbjct: 2   YAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNCV 61

Query: 199 -------------LSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                        + +AR+ FD + E++ VS+N I+DGYAK  +   AF LF +I    I
Sbjct: 62  GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 121

Query: 246 ----VSWSTMVWG-----------------------------------YSKDGDMEMAKL 266
                ++++++ G                                   YS+ G++E A  
Sbjct: 122 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 181

Query: 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326
           +F+ M  + ++ WT +I+G+A+ G A  A  ++ +M E G KP++ T +++L+AC+  G+
Sbjct: 182 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 241

Query: 327 LGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNA 382
           +  G K   S+ K      +     C  +VD+  + G L  AM   N M    D + W  
Sbjct: 242 ISEGQKHFNSMYKEHGIVPRMEHYAC--MVDLLGRSGLLVEAMEFINSMPLMADALVWRT 299

Query: 383 MLYGLAMHGQGE 394
           +L    +HG  E
Sbjct: 300 LLGACRVHGNTE 311



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 133/292 (45%), Gaps = 27/292 (9%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           +LF ++I   +     +   LIS  A   +M  A K F+ + + ++  YN ++    +N 
Sbjct: 48  ELFCKMISASVN---CVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNL 104

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
            + +AF +F ++ + G+    FT+  LL            + IH  + K GY  +  + N
Sbjct: 105 KSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICN 164

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER-- 212
           +LI  YS+CG   +  A ++F  M +R+++SW SMI G  K G  + A  +F +M E   
Sbjct: 165 ALISMYSRCG--NIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGT 222

Query: 213 --DAVSWNTILDGYAKAGEMNLAFELFEKI-PHRNIV----SWSTMVWGYSKDGDMEMAK 265
             + +++  +L   +  G ++   + F  +     IV     ++ MV    + G +  A 
Sbjct: 223 KPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAM 282

Query: 266 LLFDRMP--AKTLVPWTII----ISGYAEKGMAKEAARLYDQMEEAGLKPDD 311
              + MP  A  LV  T++    + G  E G  + AA +  + E     PDD
Sbjct: 283 EFINSMPLMADALVWRTLLGACRVHGNTELG--RHAAEMILEQE-----PDD 327



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/236 (18%), Positives = 105/236 (44%), Gaps = 21/236 (8%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           + + +Q+  +++K   + +  I   LIS  + C  +  A +VFN+++D +V  + ++I  
Sbjct: 141 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 200

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALIY 142
             ++    +A  +F  M E G   +  TY  +L AC+       G+  F+ +   H ++ 
Sbjct: 201 FAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP 260

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG-ERDIVSWNSMIAGLVKGGELSE 201
           +  ++        ++D   + G+  +  A +   SM    D + W +++      G    
Sbjct: 261 RMEHYA------CMVDLLGRSGL--LVEAMEFINSMPLMADALVWRTLLGACRVHGNTEL 312

Query: 202 ARR----LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVW 253
            R     + ++ P+ D  ++  + + +A AG+     ++ + +  RN++  +   W
Sbjct: 313 GRHAAEMILEQEPD-DPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW 367


>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
 gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
          Length = 496

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 170/455 (37%), Positives = 259/455 (56%), Gaps = 44/455 (9%)

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWNTILDG----------- 223
           RD+VSW S IA   + G+L  A      M      P  + V+  T+L             
Sbjct: 30  RDVVSWTSTIARAARQGDLHAAAASLCAMLSSPAAPAPNDVTLLTVLSACADSPSSPLAR 89

Query: 224 ------YAKAGEM---------------------NLAFELFEKIPHRNIVSWSTMVWGYS 256
                 +A+A ++                     +LA +LF+ +P R++V+++TMV G  
Sbjct: 90  PLALTLHARALKLFPSHLLLSTCLARFYLASRLPHLALQLFDTMPVRSVVTYNTMVSGLM 149

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
           ++G ++ A  +FD MP    V WT +I G+ + G   EA   +  M    ++PD  TLI+
Sbjct: 150 RNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIA 209

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD 376
           +++ACAE G LGLGM VH  + +   + N  V N+L+DMYA+CG +  A  VF+ + K+ 
Sbjct: 210 VVSACAEVGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRT 269

Query: 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436
           +VSWN+M+ GLA +G   +A+ LF  M+ +GF PD  T  GVL AC+HAG  + G++Y+ 
Sbjct: 270 VVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYD 329

Query: 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAV 496
            M  +YGI  ++EHYGC++DLLGR+GRL EA+ +V++MP+ PN ++ G LL  CR H  +
Sbjct: 330 LMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDL 389

Query: 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEV 556
           ++AE+++  L  L      NY +LSNI+AA G W+    VR  MK    +K  G S VE+
Sbjct: 390 DMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSIVEI 449

Query: 557 DNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591
           D +VHEF   D+ HP++E+I QM+  L  ++   G
Sbjct: 450 DGDVHEFVSSDRSHPQAEEIGQMLGLLRHEMAMYG 484



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 153/355 (43%), Gaps = 69/355 (19%)

Query: 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
           LA +LF +M  R +V++N+M++GL++ G +  A  +FD MP  D VSW  ++DG+ K G 
Sbjct: 125 LALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDGFVKNGR 184

Query: 230 MNLAFELFEKI------P---------------------------------HRNIVSWST 250
            + A + F  +      P                                  RN+   ++
Sbjct: 185 HDEAIDCFRAMLLDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLERNVRVANS 244

Query: 251 MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
           ++  Y++ G +++A  +F  +  +T+V W  +I G A  G+  EA  L+++M   G KPD
Sbjct: 245 LIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEAIELFEEMRRQGFKPD 304

Query: 311 DGTLISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
             TL  +L AC+ +GL   G++ +  +  +Y           +VD+  + G LD AM V 
Sbjct: 305 AVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRAGRLDEAMHVV 364

Query: 370 NGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--------YTFVG--- 417
             M  + + V   A+L G  MHG  + A  L   + +   G D         Y  VG   
Sbjct: 365 ETMPMRPNEVVLGALLAGCRMHGDLDMAEQLMQHLFELDPGGDANYVLLSNIYAAVGKWD 424

Query: 418 ----VLCACTHAGF----------IDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458
               V       G           ID  V  F S +R +   PQ E  G M+ LL
Sbjct: 425 GAGKVRSLMKARGVKKRPGHSIVEIDGDVHEFVSSDRSH---PQAEEIGQMLGLL 476



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 128/293 (43%), Gaps = 48/293 (16%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A +VF+ +  PD   +  LI   V+N  + +A   F  M    V  D  T   ++ AC  
Sbjct: 157 AFEVFDGMPGPDKVSWTALIDGFVKNGRHDEAIDCFRAMLLDSVEPDYVTLIAVVSACAE 216

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L   +H L+ + G   ++ V NSLID Y++CG   V LA ++F S+ +R +VSWN
Sbjct: 217 VGALGLGMWVHRLVLRQGLERNVRVANSLIDMYARCG--QVKLAAQVFHSIRKRTVVSWN 274

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVS--------------------------- 216
           SMI GL   G  +EA  LF+EM  +    DAV+                           
Sbjct: 275 SMIVGLAANGLCTEAIELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTE 334

Query: 217 ---------WNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMA-- 264
                    +  ++D   +AG ++ A  + E +P R N V    ++ G    GD++MA  
Sbjct: 335 YGIAARMEHYGCVVDLLGRAGRLDEAMHVVETMPMRPNEVVLGALLAGCRMHGDLDMAEQ 394

Query: 265 --KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLI 315
             + LF+  P      + ++ + YA  G    A ++   M+  G+K   G  I
Sbjct: 395 LMQHLFELDPGGD-ANYVLLSNIYAAVGKWDGAGKVRSLMKARGVKKRPGHSI 446



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 14/181 (7%)

Query: 40  IIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99
           +++  L+R+  +A  LI   A C Q+ LA +VF+ I+   V  +N++I     N L  +A
Sbjct: 230 VLRQGLERNVRVANSLIDMYARCGQVKLAAQVFHSIRKRTVVSWNSMIVGLAANGLCTEA 289

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALIYKCGYFGDIFV 152
             +F +M+ +G   D  T   +L AC       +G  ++ L+   + +  +  ++G    
Sbjct: 290 IELFEEMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYG---- 345

Query: 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER 212
              ++D   + G +  ++     M M   ++V   +++AG    G+L  A +L   + E 
Sbjct: 346 --CVVDLLGRAGRLDEAMHVVETMPMRPNEVV-LGALLAGCRMHGDLDMAEQLMQHLFEL 402

Query: 213 D 213
           D
Sbjct: 403 D 403


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 205/679 (30%), Positives = 327/679 (48%), Gaps = 116/679 (17%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPY-IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           K  N+ Q +Q    ++   L    Y ++  LI+   L         +F     PD  +Y+
Sbjct: 10  KISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYS 69

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
            +++   +   + Q   +F       +    F Y +L+K   GK+      M HA + K 
Sbjct: 70  CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLA-GKSG----NMFHAYVLKL 124

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER----------------------- 181
           G+  D F+ N+++D Y+K G   V LA+ LF  M ER                       
Sbjct: 125 GHIDDHFIRNAILDMYAKNG--QVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182

Query: 182 --------DIVSWNSMIAGLVKGGELS-------------------------------EA 202
                   +I++W SM+ G  K G+L                                EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 203 RRLFDEMPER----DAVSW-----------------------------------NTILDG 223
             LF +M E     D  +W                                     +LD 
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 224 YAKAGEMNLAFELFEKI-PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
           +AK G + +A  +F+++   RN V+W+ M+  Y++ G + +A+ LFD MP + +V W  +
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 283 ISGYAEKGMAKEAARLYDQMEEA-GLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           I+GYA+ G +  +  L+ +M     ++PD+ T+ S+L+AC   G L L   V   + +  
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKN 422

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            K   +  N+L+ MY+KCGS+ +A  +F  M  +D+VS+N ++ G A +G G++A+ L  
Sbjct: 423 IKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVL 482

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M++EG  PD  T++GVL AC+HAG +++G   F S++      P V+HY CM+DLLGR+
Sbjct: 483 TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRA 537

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G L EA  L+QSMP++P+A ++G+LL A R H  V L E     L  L+  + GNY +LS
Sbjct: 538 GELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLS 597

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+A+ G W  V  VR  MKK   +K  G S VE   +VH+F+V D+ H +S+ IY+++ 
Sbjct: 598 NIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLA 657

Query: 582 TLGKDLKPVGHAAKLSAEI 600
            L + +K VG  A  S  +
Sbjct: 658 ELERKMKRVGFVADKSCAL 676



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 16  LLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
            ++  L ++H K  NL   + +F +   L  QR+      +IS+     ++ LA ++F++
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDE---LGSQRNAVTWNIMISAYTRVGKLSLARELFDN 350

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHL 133
           +   DV  +N++I    QN  +A +  +F +M     +  D  T   +L AC       L
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +  ++ +      I   NSLI  YSKCG   V+ A ++F +MG RD+VS+N++I+G 
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCG--SVADAHRIFQTMGTRDVVSFNTLISGF 468

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
              G   EA +L   M E     D V++  +L   + AG +N    +F+ I    +  ++
Sbjct: 469 AANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYA 528

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAK 274
            MV    + G+++ AK+L   MP K
Sbjct: 529 CMVDLLGRAGELDEAKMLIQSMPMK 553


>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
          Length = 499

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 230/379 (60%), Gaps = 1/379 (0%)

Query: 219 TILDGYAKAGEMNLAFELF-EKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV 277
           +++  Y   G +  A  +F E   + ++VSW+ M+ GY K GD+  A+ LFD MP + +V
Sbjct: 111 SLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKSGDLARARELFDVMPGRNVV 170

Query: 278 PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASI 337
            WT++I  YA+    +EA  ++ +M+  G++PD   L+S+L+AC + G++ LG  VH  +
Sbjct: 171 SWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHRFV 230

Query: 338 NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKAL 397
            +        + NA++DMY KCGS+  A+ VF GM +K +V+W  M+ G A+HG G +A+
Sbjct: 231 LRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSIVTWTTMIAGFALHGLGSEAV 290

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            LF RM+ E   P+  TF+ VL  C+H G  D G  YF +M   Y I P+VEHYGCMIDL
Sbjct: 291 ELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHYGCMIDL 350

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+G L EA  L+Q MP + NA IWG LL A R H   EL E+ L  LI L+  + GNY
Sbjct: 351 LGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTELGEQALLHLIELEPHNSGNY 410

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSNI+A    W+ V  +R+ M+    +   GASS++VD  VHEF+  D  HP   +I 
Sbjct: 411 ILLSNIYAEQERWDAVRELRISMRDRGLRNVPGASSIDVDGMVHEFTSRDGSHPSLHKIR 470

Query: 578 QMINTLGKDLKPVGHAAKL 596
           +++  +  ++K VGH A L
Sbjct: 471 EVLCAINSNIKSVGHIALL 489



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 47/306 (15%)

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVK 195
           +H+L+ + G+  D     SL+ +Y  CG   V+ A+++F  +    D+VSWN MI G VK
Sbjct: 93  LHSLLVRAGHAADPHASASLVQAYCSCG--SVASARRVFDETAAYADVVSWNVMIDGYVK 150

Query: 196 GGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-------------- 241
            G+L+ AR LFD MP R+ VSW  ++  YA+  +   A E+F ++               
Sbjct: 151 SGDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSV 210

Query: 242 ----------------HRNIVS---------WSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                           HR ++           + ++  Y K G ++ A  +F+ M  K++
Sbjct: 211 LSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVFEGMEQKSI 270

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V WT +I+G+A  G+  EA  L+ +ME+  + P+D T +++L+ C+  GL  LG     +
Sbjct: 271 VTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWYFKT 330

Query: 337 -INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQ-- 392
            +++Y+ K        ++D+  + G L  A  +   M  K +   W A+L     HG   
Sbjct: 331 MVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFKANAAIWGALLAAARTHGDTE 390

Query: 393 -GEKAL 397
            GE+AL
Sbjct: 391 LGEQAL 396



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 18/201 (8%)

Query: 26  KCKNLNQTKQLF------AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
            C ++   +++F      A ++  ++  D Y+       LA  R++      F+ +   +
Sbjct: 118 SCGSVASARRVFDETAAYADVVSWNVMIDGYVKS---GDLARAREL------FDVMPGRN 168

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHA 139
           V  +  +I A  Q     +A  VF  MQ +G+  D      +L AC       L + +H 
Sbjct: 169 VVSWTMVIGAYAQMKQPEEAIEVFRRMQVEGIEPDGVALLSVLSACGDLGVVDLGEWVHR 228

Query: 140 LIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199
            + + G   +I + N++ID Y KCG V  +L  ++F  M ++ IV+W +MIAG    G  
Sbjct: 229 FVLRRGLCQEIPLMNAIIDMYVKCGSVKKAL--EVFEGMEQKSIVTWTTMIAGFALHGLG 286

Query: 200 SEARRLFDEMPERDAVSWNTI 220
           SEA  LF  M E++ VS N I
Sbjct: 287 SEAVELFRRM-EKENVSPNDI 306


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  322 bits (824), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 289/509 (56%), Gaps = 41/509 (8%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A   +M  A  +FN++   ++  +N +I A V+ +    A+++F++M EK    D
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEK----D 294

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           + ++                                    ++I+ Y + G   +  A+++
Sbjct: 295 SVSWT-----------------------------------AMINGYVRVG--KLLQAREI 317

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
              M  ++I +  +MI G ++ G + EA  +F ++  RD+V WN+++ GYA  G  + A 
Sbjct: 318 LNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEAL 377

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            LF+++  +++VSW+TM+  Y++ G M+ A  +F+ M  + +V W  +I+GY + G+  E
Sbjct: 378 RLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFE 437

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A   +  M++ G KPD  T++  L A A    L +G+++H    K  F  +  V NA++ 
Sbjct: 438 ALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILT 497

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAK G +  A +VF  +  KD+VSWN+++ G A++G G++A+ LF  M   G  PD+ T
Sbjct: 498 MYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVT 557

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F G+L AC H GF+D+G+  F SM   Y I PQ EHY C+I+LLGR GRL+EA+ +VQ M
Sbjct: 558 FTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGM 617

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
               +A IWG LL ACR H+ +ELA+   + L+ L+  +  NY +LSN+ A  G W+ V 
Sbjct: 618 KTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVE 677

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
            VR+ MK+ +A+K  G S +E+DN++H F
Sbjct: 678 RVRVLMKENKAEKQPGCSWIEIDNQLHCF 706



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 154/596 (25%), Positives = 265/596 (44%), Gaps = 94/596 (15%)

Query: 20  KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPD 79
           ++  L +   + +   +F Q+     +R+      +IS+ A   ++  A ++F+ +   +
Sbjct: 21  RISQLGRSGRIEEAVAVFLQMT----ERNIVTYNSMISAYAKNGRIANARELFDLMPQRN 76

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT---YPFLLKACNGKNWFHLVQM 136
           +  +N++I   + N L   A R+F  M ++ +++       Y  + +    +  F+L+  
Sbjct: 77  LVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFNLLPD 136

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
                       D    N+LI  Y+K  +     AKKLF  M  +++VSWNS+++G  K 
Sbjct: 137 KQ----------DTVCRNALIAGYAKKRLF--REAKKLFDEMLVKNVVSWNSILSGYTKN 184

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYS 256
           G++    + F+ M ER+ VSWN ++DGY   G+++ A+  F+KIP  N+VSW TM+ G++
Sbjct: 185 GKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFA 244

Query: 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLIS 316
             G M  A+ LF+ MP K LV W  +I  Y  +    +A +L+ +M E     D  +  +
Sbjct: 245 HYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPE----KDSVSWTA 300

Query: 317 ILAACAESGLLGLGMKV------------HASINKY--------------RFKCNTNVC- 349
           ++      G L    ++             A IN Y              +     +VC 
Sbjct: 301 MINGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCW 360

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR------- 402
           N+++  YA CG  D A+ +F  M  KD+VSWN M+   A  GQ +KAL +F+        
Sbjct: 361 NSMITGYAHCGRTDEALRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVV 420

Query: 403 ------------------------MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
                                   MK +G  PD+ T V  L A  +   ++ GVQ  + +
Sbjct: 421 SWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQ-LHHL 479

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRKHN 494
               G    +     ++ +  +SGR+ EA  +   +     V  N++I G  L  C K  
Sbjct: 480 TIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKE- 538

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT--GDWNKVANVRLQMKKTRAQKP 548
           AVEL E     ++ L+G  P   T    + A    G  ++  N+   M +T + KP
Sbjct: 539 AVELFE-----VMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKP 589



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 161/333 (48%), Gaps = 51/333 (15%)

Query: 177 SMGERD--IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
           S+GE+   + + N  I+ L + G + EA  +F +M ER+ V++N+++  YAK G +  A 
Sbjct: 7   SIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANAR 66

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTI------------- 281
           ELF+ +P RN+VSW++M+ GY  +  +E A  LFDRM  + +  WT+             
Sbjct: 67  ELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEK 126

Query: 282 -------------------IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
                              +I+GYA+K + +EA +L+D+M    L  +  +  SIL+   
Sbjct: 127 ARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSWNSILSGYT 182

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
           ++G + LG++   ++ +     N    N +VD Y   G LD+A   F  +   ++VSW  
Sbjct: 183 KNGKMQLGLQFFEAMGER----NVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVT 238

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           ML G A +G+  +A  LF+ M  +       ++  ++ A      ID   + F  M    
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNL----VSWNAMIGAYVRENQIDDAYKLFMEMPEKD 294

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
            +      +  MI+   R G+L +A  ++  MP
Sbjct: 295 SV-----SWTAMINGYVRVGKLLQAREILNLMP 322


>gi|357163369|ref|XP_003579710.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Brachypodium distachyon]
          Length = 548

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 177/530 (33%), Positives = 286/530 (53%), Gaps = 6/530 (1%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL- 82
           L +C+      QL A+I++L L     +  +  ++        +A    + +    V L 
Sbjct: 16  LGRCRTARCLAQLHARIVRLGLHNHHSLLARFAAACDALASPSVADSFLSALPSHAVPLS 75

Query: 83  -YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
             NT++ +  ++S    A   F +M  +    D F++P LL+AC           +HA  
Sbjct: 76  IRNTVLASLSRHSSLRAALAQF-NMIRRTAGPDAFSFPPLLRACAHVPCTSTGTALHAAA 134

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            + G   D+FV  +LI  Y +        A+ LF SM     VSW ++I   V  GE+  
Sbjct: 135 IRLGLDADLFVRTALIQFYGR--CRAAGAARALFDSMTIPSDVSWTAIIIVYVNSGEIVA 192

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261
           AR LFD +P R+ V WN ++DGY K G++  A  LFE++P +   + ++++ GY+K G+M
Sbjct: 193 ARELFDRIPHRNLVHWNAMVDGYVKCGDLESAGRLFEEMPRKTAAAHTSLIGGYAKAGNM 252

Query: 262 EMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321
           E AKLLFD++  + +  W+ +ISGYA+ G   EA R++++  +  + PD+  +++++AAC
Sbjct: 253 EGAKLLFDKLQDRDVFAWSAMISGYAQNGYPGEAFRIFNEFHKQDICPDEPVIVALMAAC 312

Query: 322 AESGLLGLGMKVHASINKYRFKCN-TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380
           ++ G + L   +   I  Y    N  +V   L++M AKCG+++ A  +F  M  +D+ S+
Sbjct: 313 SQLGNIMLARWIEGYIGSYSIDINNAHVLAGLINMNAKCGNMERATVLFESMPVRDVFSY 372

Query: 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440
            +M+ G  +HG   KA+ LFSRM  EG  PD   F  VL AC HAG +++  +YF  M+ 
Sbjct: 373 CSMMQGHCLHGSANKAVELFSRMLLEGLSPDNAVFTVVLTACNHAGLVEEAKKYFGMMKN 432

Query: 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAE 500
            Y I+P  +HY C++ LLGR G L++A  +++SMP EP+A  WG LLG C      EL +
Sbjct: 433 VYSIVPSGDHYACLVSLLGRFGILRDAYEIIKSMPGEPHAGSWGALLGGCILQCDTELGK 492

Query: 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550
                L  ++  + GNY  LSNI+A    W  V+ +R +M +    K +G
Sbjct: 493 IAAKKLFEIEPDNAGNYVTLSNIYANIDRWTDVSKIRAEMSRKGLTKIAG 542


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 191/641 (29%), Positives = 326/641 (50%), Gaps = 74/641 (11%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L   ++LF +I     +R+ +    L+S  A   ++  A  VF ++ + D   +  ++  
Sbjct: 81  LRDARRLFDEIPLA--RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVG 138

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             +     +A +  LDM   G     FT   +L +C       + + +H+ + K G    
Sbjct: 139 LNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSC 198

Query: 150 IFVPNSLIDSYSKCG-------------VVGVS----------------LAKKLFMSMGE 180
           + V NS+++ Y KCG             V  VS                LA+ LF SM  
Sbjct: 199 VPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPG 258

Query: 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM-------PE---------------------- 211
           R IVSWN+MIAG  + G  ++A +LF  M       P+                      
Sbjct: 259 RSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQ 318

Query: 212 ------RDAVSWNT-----ILDGYAKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKD 258
                 R  +++N+     ++  YAK+G +  A  + ++      N++S++ ++ GY K 
Sbjct: 319 VHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKI 378

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           GDME A+ +F  M  + +V WT +I GY + G   EA  L+  M   G +P+  TL ++L
Sbjct: 379 GDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVL 438

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDL 377
           + CA    L  G ++H    +   + +++V NA++ MYA+ GS   A  +F+ +  +K+ 
Sbjct: 439 SVCASLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKET 498

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           ++W +M+  LA HGQGE+A+GLF  M   G  PD+ T+VGVL AC+HAGF+++G +Y+  
Sbjct: 499 ITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQ 558

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           ++ ++ I P++ HY CM+DLL R+G   EA   ++ MPVEP+AI WG+LL ACR H   E
Sbjct: 559 IKNEHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAE 618

Query: 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVD 557
           LAE   + L+ +  ++ G Y+ ++N+++A G W+  A +    K+   +K +G S   + 
Sbjct: 619 LAELAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIR 678

Query: 558 NEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           +++H F   D +HP+ + +Y M   + +++K  G    L +
Sbjct: 679 SKIHVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQS 719



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 154/326 (47%), Gaps = 42/326 (12%)

Query: 218 NTILDGYAK----AGEMNLAFELFEKIP--HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271
           N +L  Y +    AG +  A  LF++IP   RN+ +W++++  ++K G +  A+ +F  M
Sbjct: 65  NNLLSYYGETAGGAGGLRDARRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEM 124

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
           P +  V WT+++ G    G   EA +    M   G  P   TL ++L++CA +    +G 
Sbjct: 125 PERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGR 184

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGS------------------------------ 361
           KVH+ + K        V N++++MY KCG                               
Sbjct: 185 KVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLG 244

Query: 362 -LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVL 419
            +D A S+F  M  + +VSWNAM+ G   +G   KAL LFSRM  E    PD++T   VL
Sbjct: 245 RMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVL 304

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV-QSMPVE 477
            AC + G +  G Q + Y +  +     QV +   +I    +SG ++ A R++ QSM  +
Sbjct: 305 SACANLGNVRIGKQVHAYILRTEMAYNSQVTN--ALISTYAKSGSVENARRIMDQSMETD 362

Query: 478 PNAIIWGTLLGACRKHNAVELAEEVL 503
            N I +  LL    K   +E A E+ 
Sbjct: 363 LNVISFTALLEGYVKIGDMESAREMF 388



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 43/229 (18%)

Query: 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV----------------------- 353
           +L  C  +   G G  +HA   K     +  +CN L+                       
Sbjct: 32  LLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLFDEI 91

Query: 354 --------------DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399
                          M+AK G L +A  VF  M ++D VSW  M+ GL   G+  +A+  
Sbjct: 92  PLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKT 151

Query: 400 FSRMKDEGFGPDKYTFVGVL--CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
              M  +GF P ++T   VL  CA T AG + + V  F       G+   V     ++++
Sbjct: 152 LLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVV---KLGLGSCVPVANSVLNM 208

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506
            G+ G  + A  + + MPV  +   W  ++        ++LAE + + +
Sbjct: 209 YGKCGDAETASTVFERMPVR-SVSSWNAMVSLNTHLGRMDLAESLFESM 256


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 301/577 (52%), Gaps = 12/577 (2%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           K++   ++K     D +    L +  A CRQ+  A KVF+ + + D+  +NT++    QN
Sbjct: 155 KEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQN 214

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
            +   A  +   M E+ +     T   +L A +      + + IH    + G+   + + 
Sbjct: 215 GMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNIS 274

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
            +L+D Y+KCG   +  A++LF  M ER++VSWNSMI   V+     EA  +F +M +  
Sbjct: 275 TALVDMYAKCG--SLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332

Query: 214 A----VSWNTILDGYAKAGEMNLAFELFEKIP-----HRNIVSWSTMVWGYSKDGDMEMA 264
                VS    L   A  G++        K+       RN+   ++++  Y K  +++ A
Sbjct: 333 VKPTDVSVMGALHACADLGDLERG-RFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391

Query: 265 KLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324
             +F ++ ++TLV W  +I G+A+ G   +A   + QM    +KPD  T +S++ A AE 
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451

Query: 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384
            +      +H  + +     N  V  ALVDMYAKCG++  A  +F+ M+++ + +WNAM+
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444
            G   HG G+ AL LF  M+     P+  TF+ V+ AC+H+G ++ G++ FY M+ +Y I
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
              ++HYG M+DLLGR+GRL EA   +  MPV+P   ++G +LGAC+ H  V  AE+  +
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAE 631

Query: 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFS 564
            L  L   D G + +L+NI+ A   W KV  VR+ M +   +K  G S VE+ NEVH F 
Sbjct: 632 RLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691

Query: 565 VCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEIG 601
                HP S++IY  +  L   +K  G+    +  +G
Sbjct: 692 SGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLG 728



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 161/600 (26%), Positives = 275/600 (45%), Gaps = 57/600 (9%)

Query: 4   PIRAPTWFSKRRLLEEKLQN------LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS 57
           P R   + S+R  +   +        L +C +L + +Q+   + K  L ++ +   KL+S
Sbjct: 18  PSRHRHFLSERNYIPANVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVS 77

Query: 58  SLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT 117
                  +  A +VF  I      LY+T+++   + S   +A + F+ M+   V    + 
Sbjct: 78  LFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYN 137

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           + +LLK C  +    + + IH L+ K G+  D+F    L + Y+KC    V+ A+K+F  
Sbjct: 138 FTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCR--QVNEARKVFDR 195

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDA----VSWNTILDGYAKAGEMNLA 233
           M ERD+VSWN+++AG  + G    A  +   M E +     ++  ++L   +    +++ 
Sbjct: 196 MPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVG 255

Query: 234 FELF---EKIPHRNIVSWST-MVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK 289
            E+     +    ++V+ ST +V  Y+K G +E A+ LFD M  + +V W  +I  Y + 
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 290 GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC 349
              KEA  ++ +M + G+KP D +++  L ACA+ G L  G  +H    +     N +V 
Sbjct: 316 ENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVV 375

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N+L+ MY KC  +D A S+F  +  + LVSWNAM+ G A +G+   AL  FS+M+     
Sbjct: 376 NSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVK 435

Query: 410 PDKYTFVGVLCACT------HAGFI---------DKGVQYFYSMERDYGIL--------- 445
           PD +T+V V+ A        HA +I         DK V    ++   Y            
Sbjct: 436 PDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLI 495

Query: 446 ------PQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAV 496
                   V  +  MID  G  G  K AL L + M    ++PN + + +++ AC     V
Sbjct: 496 FDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLV 555

Query: 497 ELAEEVLDCLIRLKGS-----DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
           E     L C   +K +        +Y  + ++    G  N+  +  +QM    A    GA
Sbjct: 556 EAG---LKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGA 612


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 192/606 (31%), Positives = 312/606 (51%), Gaps = 66/606 (10%)

Query: 50  YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDM-QE 108
           ++   L++  + C  +  A KVF+++   DV  +N++I +  +      A  +F  M  E
Sbjct: 163 FVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNE 222

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
            G   D+ T   +L  C       L +  H          ++FV N L+D Y+K G++  
Sbjct: 223 FGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMM-- 280

Query: 169 SLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGY 224
             A  +F +M  +D+VSWN+M+AG  + G   +A RLF++M E     D V+W+  + GY
Sbjct: 281 DEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGY 340

Query: 225 AKAG----EMNLAFELFEKIPHRNIVSWSTMVWG-------------------------- 254
           A+ G     + +  ++       N V+  +++ G                          
Sbjct: 341 AQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRK 400

Query: 255 ----------------YSKDGDMEMAKLLFDRMPAKT--LVPWTIIISGYAEKGMAKEAA 296
                           Y+K   +++A+ +FD +  K   +V WT++I GY++ G A +A 
Sbjct: 401 NGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 297 RLYDQM--EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN-----VC 349
            L  +M  E+   +P+  T+   L ACA    L +G ++HA    Y  +   N     V 
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHA----YALRNQQNAVPLFVS 516

Query: 350 NALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409
           N L+DMYAKCG + +A  VF+ M +K+ V+W +++ G  MHG GE+ALG+F  M+  GF 
Sbjct: 517 NCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFK 576

Query: 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469
            D  T + VL AC+H+G ID+G++YF  M+ D+G+ P  EHY C++DLLGR+GRL  ALR
Sbjct: 577 LDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALR 636

Query: 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529
           L++ MP+EP  ++W  LL  CR H  VEL E     +  L  ++ G+YT+LSN++A  G 
Sbjct: 637 LIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGR 696

Query: 530 WNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
           W  V  +R  M+    +K  G S VE       F V D+ HP +++IYQ+++   + +K 
Sbjct: 697 WKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLSDHMQRIKD 756

Query: 590 VGHAAK 595
           +G+  +
Sbjct: 757 IGYVPE 762



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 168/563 (29%), Positives = 268/563 (47%), Gaps = 66/563 (11%)

Query: 24  LHKCKNLNQTKQLFAQIIK---LDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           +HKCK ++Q K +  +++    L L    ++    IS   L   + L ++ F    D  V
Sbjct: 35  IHKCKTISQVKLIHQKLLSFGILTLNLTSHLISTYISLGCLSHAVSL-LRRFPP-SDAGV 92

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
           + +N+LIR+   N    +    F  M       DN+T+PF+ KAC   +        HAL
Sbjct: 93  YHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHAL 152

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
               G+  ++FV N+L+  YS+CG   +S A+K+F  M   D+VSWNS+I    K G+  
Sbjct: 153 SRVTGFMSNVFVGNALVAMYSRCG--SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPK 210

Query: 201 EARRLFDEMPE----------------------------------------RDAVSWNTI 220
            A  +F +M                                          ++    N +
Sbjct: 211 MALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCL 270

Query: 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL---- 276
           +D YAK G M+ A  +F  +P +++VSW+ MV GYS+ G  E A  LF++M  + +    
Sbjct: 271 VDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDV 330

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V W+  ISGYA++G+  EA  +  QM  +G+KP++ TLIS+L+ CA  G L  G ++H  
Sbjct: 331 VTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCY 390

Query: 337 INKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNGMTKK--DLVSWNAMLYGL 387
             KY      N       V N L+DMYAKC  +D A ++F+ ++ K  D+V+W  M+ G 
Sbjct: 391 AIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGY 450

Query: 388 AMHGQGEKALGLFSRMKDEG--FGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDYGI 444
           + HG   KAL L S M +E     P+ +T    L AC     +  G Q + Y++      
Sbjct: 451 SQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNA 510

Query: 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
           +P      C+ID+  + G + +A RLV    +E N + W +L+     H   E A  + +
Sbjct: 511 VPLFVS-NCLIDMYAKCGDIGDA-RLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFE 568

Query: 505 CLIRLKGSDPGNYTMLSNIFAAT 527
            + R+ G      T+L  ++A +
Sbjct: 569 EMRRI-GFKLDGVTLLVVLYACS 590


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 312/574 (54%), Gaps = 16/574 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++  QL +  IK  +  D  +   L+   + C  +  A K F   +  ++ L+N ++ A
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVA 437

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q    + +F +F  MQ +G+  + FTYP +L+ C      +L + IH  + K G+  +
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           ++V + LID Y+K G   ++LA ++   + E D+VSW +MIAG V+    SEA +LF+EM
Sbjct: 498 VYVCSVLIDMYAKYG--QLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST-----------MVWGYSKD 258
             R  + ++ I  G+A A           +    +  S++            ++  Y++ 
Sbjct: 556 EYR-GIQFDNI--GFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARC 612

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G ++ A L F+++  K  + W  ++SG A+ G  +EA +++ +M     + +  T  S +
Sbjct: 613 GRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAI 672

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +A A    +  G ++H+ + K  +     V N+L+ +YAK GS+ +A   FN M++++++
Sbjct: 673 SAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVI 732

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWNAM+ G + HG G +AL LF  MK  G  P+  TFVGVL AC+H G + +G+ YF SM
Sbjct: 733 SWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESM 792

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            + + ++P+ EHY C++DLLGR+G+L  A+  ++ MP+  +A+IW TLL AC  H  +E+
Sbjct: 793 FKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEI 852

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E     L+ L+  D   Y ++SNI+A +  W      R  MK    +K  G S +EV N
Sbjct: 853 GERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKN 912

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            VH F   D+LHP + QIY+ I  L +    +G+
Sbjct: 913 AVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGY 946



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 249/514 (48%), Gaps = 24/514 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L +T +L  +I K     +P +   L+ +         A+KVF++  +  V  +N +I 
Sbjct: 73  SLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIH 132

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYF 147
             V    N Q F +F  M  +G+  + +T+  +LKAC G +  F+ V+ +H+  +  G+ 
Sbjct: 133 VFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFD 192

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               V N LID YSK G +    AKK+F  +  +DIV+W +MI+GL + G   EA  LF 
Sbjct: 193 SSPLVANLLIDLYSKNGYI--ESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFC 250

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW---------STMVWGYSKD 258
           +M   +      +L     A      FEL E++ H  ++ W         + +V  YS+ 
Sbjct: 251 DMHASEIFPTPYVLSSVLSASTKIQLFELGEQL-HCLVIKWGFHSETYVCNGLVALYSRS 309

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +  A+ +F  M ++  V +  +ISG  ++G +  A  L+ +M+   LKPD  T+ S+L
Sbjct: 310 RKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLL 369

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA  G L  GM++H+   K     +  +  +L+D+Y+KC  ++ A   F     +++V
Sbjct: 370 SACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIV 429

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            WN ML           +  +F +M+ EG  P+++T+  +L  CT  G +  G Q  ++ 
Sbjct: 430 LWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ-IHTH 488

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN---- 494
               G    V     +ID+  + G+L  ALR+++ +P E + + W  ++    +H+    
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSE 547

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           A++L EE     +  +G    N    S I A  G
Sbjct: 548 ALQLFEE-----MEYRGIQFDNIGFASAISACAG 576



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 210/427 (49%), Gaps = 24/427 (5%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+E+GV ++   Y +LL+ C           +H  I K G+ G+  + +SL+D+Y + G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG- 107

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
                A K+F     R + SWN MI   V      +   LF  M     ++     +GY 
Sbjct: 108 -DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM-----LAEGITPNGYT 161

Query: 226 KAGEM------NLAFELFEKIPHRNI--------VSWSTMVWGYSKDGDMEMAKLLFDRM 271
            AG +      ++AF   +++  R          +  + ++  YSK+G +E AK +F+ +
Sbjct: 162 FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             K +V W  +ISG ++ G+ +EA  L+  M  + + P    L S+L+A  +  L  LG 
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++H  + K+ F   T VCN LV +Y++   L +A  +F+ M  +D VS+N+++ GL   G
Sbjct: 282 QLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQG 341

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
             ++AL LF++M+ +   PD  T   +L AC   G + KG+Q  +S     G+   +   
Sbjct: 342 FSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIILE 400

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           G ++DL  +   ++ A +   +   E N ++W  +L A  + + +  + E+   + +++G
Sbjct: 401 GSLLDLYSKCADVETAHKFFLTTETE-NIVLWNVMLVAYGQLDNLSDSFEIFRQM-QMEG 458

Query: 512 SDPGNYT 518
             P  +T
Sbjct: 459 MIPNQFT 465



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 3/242 (1%)

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           + E+G +K   +L + MEE G++ +    + +L  C  SG L   M++H  I+K  F   
Sbjct: 34  HMEQGKSKRI-QLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE 92

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             + ++LVD Y + G    A+ VF+  + + + SWN M++         +   LF RM  
Sbjct: 93  PLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLA 152

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
           EG  P+ YTF GVL AC         V+  +S    YG          +IDL  ++G ++
Sbjct: 153 EGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
            A ++   + ++ + + W  ++    + N +E    +L C +      P  Y + S + A
Sbjct: 213 SAKKVFNCICMK-DIVTWVAMISGLSQ-NGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 526 AT 527
           +T
Sbjct: 271 ST 272



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%), Gaps = 19/208 (9%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+ Q +Q+ + ++K     +  ++  LIS  A    +  A + FND+ + +V  +N +I 
Sbjct: 680 NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT 739

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
              Q+    +A R+F +M+  G+  ++ T+  +L AC+       G ++F  +  IH L+
Sbjct: 740 GYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLV 799

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV--KGGEL 199
            K  ++        ++D   + G +  ++     M +   D + W ++++  V  K  E+
Sbjct: 800 PKSEHY------VCVVDLLGRAGQLDRAMEYIKEMPI-PADAMIWRTLLSACVIHKNIEI 852

Query: 200 SE--ARRLFDEMPERDAVSWNTILDGYA 225
            E  A  L +  PE D+ ++  I + YA
Sbjct: 853 GERAAHHLLELEPE-DSATYVLISNIYA 879


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 185/574 (32%), Positives = 312/574 (54%), Gaps = 16/574 (2%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L++  QL +  IK  +  D  +   L+   + C  +  A K F   +  ++ L+N ++ A
Sbjct: 378 LHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVA 437

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             Q    + +F +F  MQ +G+  + FTYP +L+ C      +L + IH  + K G+  +
Sbjct: 438 YGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLN 497

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           ++V + LID Y+K G   ++LA ++   + E D+VSW +MIAG V+    SEA +LF+EM
Sbjct: 498 VYVCSVLIDMYAKYG--QLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST-----------MVWGYSKD 258
             R  + ++ I  G+A A           +    +  S++            ++  Y++ 
Sbjct: 556 EYR-GIQFDNI--GFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARC 612

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G ++ A L F+++  K  + W  ++SG A+ G  +EA +++ +M     + +  T  S +
Sbjct: 613 GRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAI 672

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +A A    +  G ++H+ + K  +     V N+L+ +YAK GS+ +A   FN M++++++
Sbjct: 673 SAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVI 732

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
           SWNAM+ G + HG G +AL LF  MK  G  P+  TFVGVL AC+H G + +G+ YF SM
Sbjct: 733 SWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESM 792

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            + + ++P+ EHY C++DLLGR+G+L  A+  ++ MP+  +A+IW TLL AC  H  +E+
Sbjct: 793 FKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEI 852

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
            E     L+ L+  D   Y ++SNI+A +  W      R  MK    +K  G S +EV N
Sbjct: 853 GERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKN 912

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            VH F   D+LHP + QIY+ I  L +    +G+
Sbjct: 913 AVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGY 946



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 143/514 (27%), Positives = 249/514 (48%), Gaps = 24/514 (4%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           +L +T +L  +I K     +P +   L+ +         A+KVF++  +  V  +N +I 
Sbjct: 73  SLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIH 132

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCGYF 147
             V    N Q F +F  M  +G+  + +T+  +LKAC G +  F+ V+ +H+  +  G+ 
Sbjct: 133 VFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFD 192

Query: 148 GDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFD 207
               V N LID YSK G +    AKK+F  +  +DIV+W +MI+GL + G   EA  LF 
Sbjct: 193 SSPLVANLLIDLYSKNGYI--ESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFC 250

Query: 208 EMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSW---------STMVWGYSKD 258
           +M   +      +L     A      FEL E++ H  ++ W         + +V  YS+ 
Sbjct: 251 DMHASEIFPTPYVLSSVLSASTKIQLFELGEQL-HCLVIKWGFHSETYVCNGLVALYSRS 309

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
             +  A+ +F  M ++  V +  +ISG  ++G +  A  L+ +M+   LKPD  T+ S+L
Sbjct: 310 RKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLL 369

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +ACA  G L  GM++H+   K     +  +  +L+D+Y+KC  ++ A   F     +++V
Sbjct: 370 SACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIV 429

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            WN ML           +  +F +M+ EG  P+++T+  +L  CT  G +  G Q  ++ 
Sbjct: 430 LWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQ-IHTH 488

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN---- 494
               G    V     +ID+  + G+L  ALR+++ +P E + + W  ++    +H+    
Sbjct: 489 VIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWTAMIAGYVQHDMFSE 547

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           A++L EE     +  +G    N    S I A  G
Sbjct: 548 ALQLFEE-----MEYRGIQFDNIGFASAISACAG 576



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 209/427 (48%), Gaps = 24/427 (5%)

Query: 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165
           M+E+GV ++   Y +LL+ C           +H  I K G+ G+  + +SL+D+Y + G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHG- 107

Query: 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA 225
                A K+F     R + SWN MI   V      +   LF  M     ++     +GY 
Sbjct: 108 -DQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRM-----LAEGITPNGYT 161

Query: 226 KAGEM------NLAFELFEKIPHRNI--------VSWSTMVWGYSKDGDMEMAKLLFDRM 271
            AG +      ++AF   +++  R          +  + ++  YSK+G +E AK +F+ +
Sbjct: 162 FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 272 PAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331
             K +V W  +ISG ++ G+ +EA  L+  M  + + P    L S+L+A  +  L  LG 
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391
           ++H  + K+ F   T VCN LV +Y++   L +A  +F+ M  +D VS+N+++ GL   G
Sbjct: 282 QLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQG 341

Query: 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451
             ++AL LF++M+ +   PD  T   +L AC   G + KG+Q  +S     G+   +   
Sbjct: 342 FSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQ-LHSHAIKAGMSADIILE 400

Query: 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511
           G ++DL  +   ++ A +       E N ++W  +L A  + + +  + E+   + +++G
Sbjct: 401 GSLLDLYSKCADVETAHKFFLXTETE-NIVLWNVMLVAYGQLDNLSDSFEIFRQM-QMEG 458

Query: 512 SDPGNYT 518
             P  +T
Sbjct: 459 MIPNQFT 465



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 3/242 (1%)

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           + E+G +K   +L + MEE G++ +    + +L  C  SG L   M++H  I+K  F   
Sbjct: 34  HMEQGKSKRI-QLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGE 92

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
             + ++LVD Y + G    A+ VF+  + + + SWN M++         +   LF RM  
Sbjct: 93  PLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLA 152

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
           EG  P+ YTF GVL AC         V+  +S    YG          +IDL  ++G ++
Sbjct: 153 EGITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIE 212

Query: 466 EALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525
            A ++   + ++ + + W  ++    + N +E    +L C +      P  Y + S + A
Sbjct: 213 SAKKVFNCICMK-DIVTWVAMISGLSQ-NGLEEEAILLFCDMHASEIFPTPYVLSSVLSA 270

Query: 526 AT 527
           +T
Sbjct: 271 ST 272



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 99/208 (47%), Gaps = 19/208 (9%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           N+ Q +Q+ + ++K     +  ++  LIS  A    +  A + FND+ + +V  +N +I 
Sbjct: 680 NIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMIT 739

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN-------GKNWFHLVQMIHALI 141
              Q+    +A R+F +M+  G+  ++ T+  +L AC+       G ++F  +  IH L+
Sbjct: 740 GYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLV 799

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV--KGGEL 199
            K  ++        ++D   + G +  ++     M +   D + W ++++  V  K  E+
Sbjct: 800 PKSEHY------VCVVDLLGRAGQLDRAMEYIKEMPI-PADAMIWRTLLSACVIHKNIEI 852

Query: 200 SE--ARRLFDEMPERDAVSWNTILDGYA 225
            E  A  L +  PE D+ ++  I + YA
Sbjct: 853 GERAAHHLLELEPE-DSATYVLISNIYA 879


>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
 gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
          Length = 554

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 186/529 (35%), Positives = 275/529 (51%), Gaps = 72/529 (13%)

Query: 71  VFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW 130
           VF DIQ P   L+N +IRA  ++   A++ + F  M       D  TY FLL AC     
Sbjct: 82  VFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLS 141

Query: 131 FHLVQMIHALIYKCGYFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSM 189
               Q +H+ +   GY+  ++F+ + L++ Y+   VVG           GE         
Sbjct: 142 LREGQQVHSKVLTNGYYSSNVFLMSKLVNFYA--AVVG-----------GE--------- 179

Query: 190 IAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                 G  L+ AR++FD+M ER                               N+V W+
Sbjct: 180 ------GAALASARKVFDDMSER-------------------------------NVVCWN 202

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309
           +M+ GY + G+++ A+ +F  MP + +V WT +ISGYA+ G  K+A  L+DQM +AG++ 
Sbjct: 203 SMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVEL 262

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVC----NALVDMYAKCGSLDNA 365
           D   L++ L ACAE G L +GM +H+ I       N  V     NAL+ MYA CG +D A
Sbjct: 263 DQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEA 322

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG---PDKYTFVGVLCAC 422
             VF  M ++  VSW +++   A  G  +  L +F  M+  G     PD  TF+GVLCAC
Sbjct: 323 YEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCAC 382

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           +HAG +D+G Q F  M + +GI P++EHYGCM+DLL R+G L EA  L+ +MPV+PN  +
Sbjct: 383 SHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAV 442

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFAATGDWNKVANVRLQM 540
           WG LLG CR +   ELA  V   L+     D   G  ++L+ ++A+   W  VA VR +M
Sbjct: 443 WGALLGGCRFYRNAELASLVSQKLVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKM 502

Query: 541 KKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKP 589
                +KP+G S V+++   H+    D+ H  +  IY+M   LGK  +P
Sbjct: 503 VAMGVKKPAGQSWVQINEVFHDSVAGDRTHENTSSIYEM---LGKIPQP 548



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 120/297 (40%), Gaps = 43/297 (14%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F ++ + +V  + T+I    +N    QA  +F  M++ GV  D       L AC  
Sbjct: 217 ARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQVVLLAALTACAE 276

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFV----------PNSLIDSYSKCGVVGVSLAKKLFMS 177
                +   IH+      Y  D FV           N+LI  Y+ CG+  +  A ++F  
Sbjct: 277 LGDLKMGMWIHS------YIQDTFVGSNQRVLVSLNNALIHMYASCGM--IDEAYEVFRW 328

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEM-------PERDAVSWNTILDGYAKAGEM 230
           M ER  VSW S+I    K G       +F  M          D +++  +L   + AG +
Sbjct: 329 MPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGTSEARPDGITFIGVLCACSHAGLV 388

Query: 231 NLAFELFEKIPHR-----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLVPWTIIIS 284
           +   +LF+ +  R      I  +  MV   S+ G ++ A+ L   MP K     W  ++ 
Sbjct: 389 DEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLG 448

Query: 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           G           R Y   E A L      L++       +G L L  +V+AS  K++
Sbjct: 449 G----------CRFYRNAELASLVSQK--LVAEPDPDKAAGYLSLLAQVYASAEKWQ 493


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 174/509 (34%), Positives = 289/509 (56%), Gaps = 41/509 (8%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           ++S  A   +M  A  +FN++   ++  +N +I A V+ +    A+++F++M EK    D
Sbjct: 239 MLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEK----D 294

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           + ++                                    ++I+ Y + G   +  A+++
Sbjct: 295 SVSWT-----------------------------------AMINGYVRVG--KLLQAREI 317

Query: 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
              M  ++I +  +MI G ++ G + EA  +F ++  RD+V WN+++ GYA  G  + A 
Sbjct: 318 LNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEAL 377

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
            LF+++  +++VSW+TM+  Y++ G M+ A  +F+ M  + +V W  +I+GY + G+  E
Sbjct: 378 RLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFE 437

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A   +  M++ G KPD  T++  L A A    L +G+++H    K  F  +  V NA++ 
Sbjct: 438 ALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGNDLFVKNAILT 497

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MYAK G +  A +VF  +  KD+VSWN+++ G A++G G++A+ LF  M   G  PD+ T
Sbjct: 498 MYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDEVT 557

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           F G+L AC H GF+D+G+  F SM   Y I PQ EHY C+I+LLGR GRL+EA+ +VQ M
Sbjct: 558 FTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQGM 617

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
               +A IWG LL ACR H+ +ELA+   + L+ L+  +  NY +LSN+ A  G W+ V 
Sbjct: 618 KTVSSAKIWGALLWACRIHHNLELAKYSAERLLALEPQNASNYVLLSNMHAEAGRWDMVE 677

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEF 563
            VR+ MK+ +A+K  G S +E+DN++H F
Sbjct: 678 RVRVLMKENKAEKQPGCSWIEIDNQLHCF 706



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 151/570 (26%), Positives = 255/570 (44%), Gaps = 90/570 (15%)

Query: 46  QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLD 105
           +R+      +IS+ A   ++  A ++F+ +   ++  +N++I   + N L   A R+F  
Sbjct: 43  ERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDR 102

Query: 106 MQEKGVFTDNFT---YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162
           M ++ +++       Y  + +    +  F+L+              D    N+LI  Y+K
Sbjct: 103 MFKRDIYSWTLMITCYTRIGELEKARELFNLLPDKQ----------DTVCRNALIAGYAK 152

Query: 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILD 222
             +     AKKLF  M  +++VSWNS+++G  K G++    + F+ M ER+ VSWN ++D
Sbjct: 153 KRLF--REAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVD 210

Query: 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
           GY   G+++ A+  F+KIP  N+VSW TM+ G++  G M  A+ LF+ MP K LV W  +
Sbjct: 211 GYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAM 270

Query: 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV--------- 333
           I  Y  +    +A +L+ +M E     D  +  +++      G L    ++         
Sbjct: 271 IGAYVRENQIDDAYKLFMEMPE----KDSVSWTAMINGYVRVGKLLQAREILNLMPYKNI 326

Query: 334 ---HASINKY--------------RFKCNTNVC-NALVDMYAKCGSLDNAMSVFNGMTKK 375
               A IN Y              +     +VC N+++  YA CG  D A+ +F  M  K
Sbjct: 327 AAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCK 386

Query: 376 DLVSWNAMLYGLAMHGQGEKALGLFSR-------------------------------MK 404
           D+VSWN M+   A  GQ +KAL +F+                                MK
Sbjct: 387 DMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYFEALNCFILMK 446

Query: 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464
            +G  PD+ T V  L A  +   ++ GVQ  + +    G    +     ++ +  +SGR+
Sbjct: 447 QQGEKPDQTTIVCCLRASANLAALNVGVQ-LHHLTIKTGFGNDLFVKNAILTMYAKSGRV 505

Query: 465 KEALRLVQSMP----VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520
            EA  +   +     V  N++I G  L  C K  AVEL E     ++ L+G  P   T  
Sbjct: 506 PEAENVFAEIKXKDVVSWNSLIAGYALNGCGKE-AVELFE-----VMPLRGIIPDEVTFT 559

Query: 521 SNIFAAT--GDWNKVANVRLQMKKTRAQKP 548
             + A    G  ++  N+   M +T + KP
Sbjct: 560 GLLSACNHGGFVDQGLNLFKSMTETYSIKP 589



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 173/327 (52%), Gaps = 20/327 (6%)

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           +F  N  I    + G +  ++A  +F+ M ER+IV++NSMI+   K G ++ AR LFD M
Sbjct: 15  VFTQNLRISQLGRSGRIEEAVA--VFLKMTERNIVTYNSMISAYAKNGRIANARELFDLM 72

Query: 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFD 269
           P+R+ VSWN+++ GY     +  A  LF+++  R+I SW+ M+  Y++ G++E A+ LF+
Sbjct: 73  PQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEKARELFN 132

Query: 270 RMPAKT-LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328
            +P K   V    +I+GYA+K + +EA +L+D+M    L  +  +  SIL+   ++G + 
Sbjct: 133 LLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM----LVKNVVSWNSILSGYTKNGKMQ 188

Query: 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLA 388
           LG++   ++ +     N    N +VD Y   G LD+A   F  +   ++VSW  ML G A
Sbjct: 189 LGLQFFEAMGER----NVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFA 244

Query: 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
            +G+  +A  LF+ M  +       ++  ++ A      ID   + F  M     +    
Sbjct: 245 HYGRMTEARNLFNEMPTKNL----VSWNAMIGAYVRENQIDDAYKLFMEMPEKDSV---- 296

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMP 475
             +  MI+   R G+L +A  ++  MP
Sbjct: 297 -SWTAMINGYVRVGKLLQAREILNLMP 322



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 164/357 (45%), Gaps = 59/357 (16%)

Query: 177 SMGERD--IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAF 234
           S+GE+   + + N  I+ L + G + EA  +F +M ER+ V++N+++  YAK G +  A 
Sbjct: 7   SIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANAR 66

Query: 235 ELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294
           ELF+ +P RN+VSW++M+ GY  +  +E A  LFDRM  + +  WT++I+ Y   G  ++
Sbjct: 67  ELFDLMPQRNLVSWNSMIAGYLHNELVEDAARLFDRMFKRDIYSWTLMITCYTRIGELEK 126

Query: 295 AARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
           A  L++      L PD                                K +T   NAL+ 
Sbjct: 127 ARELFN------LLPD--------------------------------KQDTVCRNALIA 148

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
            YAK      A  +F+ M  K++VSWN++L G   +G+ +  L  F  M +         
Sbjct: 149 GYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLM 208

Query: 415 ---FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471
              +VGV       G +D    +F  +       P V  +  M+      GR+ EA  L 
Sbjct: 209 VDGYVGV-------GDLDSAWMFFKKIPT-----PNVVSWVTMLSGFAHYGRMTEARNLF 256

Query: 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
             MP + N + W  ++GA  + N ++ A ++    + +   D  ++T + N +   G
Sbjct: 257 NEMPTK-NLVSWNAMIGAYVRENQIDDAYKL---FMEMPEKDSVSWTAMINGYVRVG 309



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 10/220 (4%)

Query: 27  CKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86
           C   ++  +LF +++     +D      +I++ A   QM  A+++FN++Q+ +V  +N+L
Sbjct: 370 CGRTDEALRLFQEMV----CKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSL 425

Query: 87  IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146
           I   VQN L  +A   F+ M+++G   D  T    L+A       ++   +H L  K G+
Sbjct: 426 ITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGF 485

Query: 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLF 206
             D+FV N+++  Y+K G   V  A+ +F  +  +D+VSWNS+IAG    G   EA  LF
Sbjct: 486 GNDLFVKNAILTMYAKSG--RVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELF 543

Query: 207 DEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           + MP R    D V++  +L      G ++    LF+ +  
Sbjct: 544 EVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTE 583


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 182/580 (31%), Positives = 308/580 (53%), Gaps = 56/580 (9%)

Query: 70  KVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG------------VFTDNFT 117
           + FN   +P   LY+  +R+      ++ + + F  +   G            +++D   
Sbjct: 8   RSFNAFLNP---LYSFTVRSLSMKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSL 64

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           +  LL++C         + +H+LI   G   D F+ N L++ YSK G    SL   LF +
Sbjct: 65  FSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLV--LFSN 122

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF 237
           M  R+++S+N +I G ++ G+L  A++LFDEM ER+  +WN ++ G  +      A  LF
Sbjct: 123 MPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLF 182

Query: 238 EK------IPHR---------------------------------NIVSWSTMVWGYSKD 258
           ++      +P                                   + V  S++   Y K 
Sbjct: 183 KEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKS 242

Query: 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318
           G +   + L   MP +T+V W  +I+G A+ G  +E    Y+ M+ AG +PD  T +S+L
Sbjct: 243 GSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVL 302

Query: 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV 378
           +AC+E   LG G ++HA + K        V ++L+ MY++ G L++++  F      D+V
Sbjct: 303 SACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVV 362

Query: 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438
            W++M+     HG+GE+AL LF +M+D     ++ TF+ +L AC+H+G  +KG +YF  M
Sbjct: 363 LWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLM 422

Query: 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498
            + Y + P++EHY C++DLLGR+GRL+EA  +++SMPV+P+ IIW TLL AC+ H   E+
Sbjct: 423 VKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEM 482

Query: 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558
           AE + + +I+L   D  +Y +LSNI A+  +W  V+ +R  M+    +K  G S +E+ N
Sbjct: 483 AERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKN 542

Query: 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            VH+FS+ D+ HP+  +I   +  L  +LK  G+  +L +
Sbjct: 543 LVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGS 582



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 160/339 (47%), Gaps = 12/339 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F+++ + ++  +N +I    Q   N QA  +F +M   G   D FT   +L+ C G
Sbjct: 147 AQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAG 206

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                  Q +HA + KCG+     V +SL   Y K G   +S  +KL  SM  R +V+WN
Sbjct: 207 LRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSG--SLSDGEKLIKSMPIRTVVAWN 264

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           ++IAG  + G   E    ++ M       D +++ ++L   ++   +    ++  ++   
Sbjct: 265 TLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVIKA 324

Query: 244 NIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
              S     S+++  YS+ G +E +   F       +V W+ +I+ Y   G  +EA  L+
Sbjct: 325 GASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELF 384

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAK 358
            QME+  ++ ++ T +S+L AC+ SGL   G +     + KY+ K        +VD+  +
Sbjct: 385 HQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGR 444

Query: 359 CGSLDNAMSVFNGM-TKKDLVSWNAMLYGLAMHGQGEKA 396
            G L+ A  +   M  + D + W  +L    +H + E A
Sbjct: 445 AGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMA 483


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 150/373 (40%), Positives = 238/373 (63%), Gaps = 2/373 (0%)

Query: 211 ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270
           E D    N++++ Y+    M  A  +F+++P R++++W+++V GY+  G++  A+ LFD 
Sbjct: 189 ESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDM 248

Query: 271 MPAKTLVPWTIIISGYAEKGMAKEAARLY-DQMEEAGLKPDDGTLISILAACAESGLLGL 329
           MP +  V W ++++GY       EA + + D +    +KP++  L+SIL+ACA  G L  
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G  +H  I+K R   ++N+  AL+DMYAKCG +D A  VF+G+ K+DL++W +M+ GL+M
Sbjct: 309 GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSM 368

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG G + L  FS M  EGF PD  T +GVL  C+H+G +++G+  F+ M   +GI+P++E
Sbjct: 369 HGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLE 428

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HYGC+IDLLGR+GRL+ A   ++SMP+EP+ + W  LL ACR H  V+L E +++ +  L
Sbjct: 429 HYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAEL 488

Query: 510 -KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQ 568
             GS  G Y +LSN++A+ G W  V  VR  M +  ++   G S +E+D  VHEF   D+
Sbjct: 489 CPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADK 548

Query: 569 LHPKSEQIYQMIN 581
           LHP+  +I + +N
Sbjct: 549 LHPRISEINKKLN 561



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 204/452 (45%), Gaps = 61/452 (13%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-PD 79
           +Q L K  +L Q KQ+ AQ++   L ++  +   LI S   CR +  A  VF+     P 
Sbjct: 59  VQLLKKRPSLTQIKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPP 118

Query: 80  VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT--DNFTYPFLLKACNGKNWFH-LVQM 136
             ++N +I+A  +   + ++  +F  M   G  T  D +T+ F+  AC+         + 
Sbjct: 119 TIIWNLMIQAYSKTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGEN 178

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H ++ K GY  DIFV NSL++ YS      +  AK++F  M +RD+++W S++ G    
Sbjct: 179 VHGMVVKDGYESDIFVGNSLVNMYSI--FSRMVDAKRVFDEMPQRDVITWTSVVKGYAMR 236

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELF-------EKIPHRNIV--- 246
           GEL  AR LFD MP R+ VSW  ++ GY      N A + F       E  P+  ++   
Sbjct: 237 GELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSI 296

Query: 247 -------------SW-----------------STMVWGYSKDGDMEMAKLLFDRMPAKTL 276
                         W                 + ++  Y+K G ++ A+ +FD +  + L
Sbjct: 297 LSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDL 356

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV-HA 335
           + WT +ISG +  G+  E    + +M   G KPDD TL+ +L  C+ SGL+  G+ + H 
Sbjct: 357 LTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHD 416

Query: 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
            I  +           L+D+  + G L++A      M  + D+V+W A+L    +HG   
Sbjct: 417 MIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHG--- 473

Query: 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
                     D   G      +  LC  +H G
Sbjct: 474 ----------DVDLGERIINHIAELCPGSHGG 495



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 4/176 (2%)

Query: 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMH 390
           ++HA +  +    NT++   L+  Y  C +L  A  VF+        + WN M+   +  
Sbjct: 73  QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132

Query: 391 GQGEKALGLFSRMKDEG--FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448
              +++L LF +M   G     DKYTF  V  AC+    +    +  + M    G    +
Sbjct: 133 PSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDI 192

Query: 449 EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504
                ++++     R+ +A R+   MP + + I W +++        +  A E+ D
Sbjct: 193 FVGNSLVNMYSIFSRMVDAKRVFDEMP-QRDVITWTSVVKGYAMRGELVRARELFD 247


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/500 (35%), Positives = 265/500 (53%), Gaps = 64/500 (12%)

Query: 100 FRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159
              +  M   G+  DNFT PF+LK+C   +   + + +H    + G  GD +V  SLID 
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNT 219
           Y KCGV+G                                 +AR+LFD+M  RD  SWN 
Sbjct: 152 YVKCGVIG---------------------------------DARKLFDKMIVRDMASWNA 178

Query: 220 ILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPW 279
           ++ GY K GE+ +A +LFE++ HRNIVSW+ M+ GY+++G  E A  LFD M        
Sbjct: 179 LIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEM-------- 230

Query: 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339
                             L D  E   +KP+  T++S+L ACA+S  L  G ++H   N 
Sbjct: 231 ------------------LQDGSE---MKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269

Query: 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KDLVSWNAMLYGLAMHGQGEKAL 397
                N++V  AL  MYAKC SL  A   F+ + +  K+L++WN M+   A HG G +A+
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 329

Query: 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457
            +F  M   G  PD  TF+G+L  C+H+G ID G+ +F  M   + + P+VEHY C++DL
Sbjct: 330 SIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDL 389

Query: 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517
           LGR+GRL EA  L+  MP++    +WG LL ACR H  +E+AE     L  L+  + GNY
Sbjct: 390 LGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNY 449

Query: 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIY 577
            +LSN++A  G W +V  +R  +K    +K  G S +E++ + H F   D+ HP++++IY
Sbjct: 450 VLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIY 509

Query: 578 QMINTLGKDLKPVGHAAKLS 597
           + +  L + +K  G+    S
Sbjct: 510 KFLEALPEKIKMAGYIPDTS 529



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 72/335 (21%), Positives = 135/335 (40%), Gaps = 54/335 (16%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNT 85
           KC  +   ++LF ++I     RD      LI+      ++G+A  +F  ++  ++  +  
Sbjct: 154 KCGVIGDARKLFDKMI----VRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTA 209

Query: 86  LIRACVQNSLNAQAFRVFLDMQEKG--VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143
           +I    QN    QA  +F +M + G  +  +  T   +L AC         + IH     
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANG 269

Query: 144 CGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEAR 203
            G   +  V  +L   Y+KC  +  +      ++   +++++WN+MI      G   EA 
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 329

Query: 204 RLFDEM----PERDAVSWNTILDG-----------------------------YA----- 225
            +F+ M     + DAV++  +L G                             YA     
Sbjct: 330 SIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDL 389

Query: 226 --KAGEMNLAFELFEKIPHRNIVS-WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---- 278
             +AG +  A EL  ++P +   S W  ++       ++E+A+L   R+    L P    
Sbjct: 390 LGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL--FVLEPDNSG 447

Query: 279 -WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            + ++ + YAE GM +E  +L   ++  G+K   G
Sbjct: 448 NYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPG 482


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/537 (33%), Positives = 293/537 (54%), Gaps = 32/537 (5%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A ++F+ + D DV  +N++I   V N L  +   ++  M   G+  D  T   +L  C  
Sbjct: 204 ASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCAN 263

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
                L + +H+L  K  +   I   N+L+D YSKCG +  +L  ++F  MGER++VSW 
Sbjct: 264 SGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGAL--RVFEKMGERNVVSWT 321

Query: 188 SMIAGLVKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHR 243
           SMIAG  + G    A RL  +M +     D V+  +IL   A++G ++   ++ + I   
Sbjct: 322 SMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKAN 381

Query: 244 NIVS----WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
           N+ S     + ++  Y+K G M+ A  +F  M  K ++ W  +I                
Sbjct: 382 NMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI---------------- 425

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
                  LKPD  T+  IL ACA    L  G ++H  I +  +  + +V NALVD+Y KC
Sbjct: 426 -----GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G L  A  +F+ +  KDLVSW  M+ G  MHG G +A+  F+ M+D G  PD+ +F+ +L
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            AC+H+G +++G ++FY M+ D+ I P++EHY CM+DLL R+G L +A   ++++P+ P+
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539
           A IWG LL  CR ++ +ELAE+V + +  L+  + G Y +L+NI+A    W +V  +R +
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 660

Query: 540 MKKTRAQKPSGASSVEVDNEVHEF-SVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           + K   +K  G S +E+  +V+ F S  +  HP S++I  ++  + + +K  G+  K
Sbjct: 661 IGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPK 717



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 206/471 (43%), Gaps = 87/471 (18%)

Query: 117 TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFM 176
           TY  +L+ C G       + +H++I       D  +   L+  Y+ CG   +   +++F 
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCG--DLKEGRRVFD 158

Query: 177 SMGERDIVSWNSMIAGLVKGGELSE--------------------ARRLFDEMPERDAVS 216
           +M ++++  WN M++   K G+  E                    A  LFD++ +RD +S
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 217 WNTILDGYAKAGEMNLAFELFEKIPH---------------------------------- 242
           WN+++ GY   G      E+++++ +                                  
Sbjct: 219 WNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 243 -----RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAAR 297
                R I   +T++  YSK GD++ A  +F++M  + +V WT +I+GY   G +  A R
Sbjct: 279 KSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIR 338

Query: 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357
           L  QME+ G+K D     SIL ACA SG L  G  VH  I     + N  VCNAL+DMY 
Sbjct: 339 LLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYT 398

Query: 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           KCGS+D A SVF+ M  KD++SWN M+        GE               PD  T   
Sbjct: 399 KCGSMDGANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSRTMAC 437

Query: 418 VLCACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476
           +L AC     +++G + + Y +   Y     V +   ++DL  + G L  A RL+  M  
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVAN--ALVDLYVKCGVLGLA-RLLFDMIP 494

Query: 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527
             + + W  ++     H     A    +  +R  G +P   + +S ++A +
Sbjct: 495 SKDLVSWTVMISGYGMHGYGNEAIATFN-EMRDAGIEPDEVSFISILYACS 544



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 124/517 (23%), Positives = 203/517 (39%), Gaps = 143/517 (27%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL----- 82
           K+L   K++ + I   ++  D  +  KL+S  A C  +    +VF+ ++  +V+L     
Sbjct: 113 KSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMV 172

Query: 83  ----------------------------------------------YNTLIRACVQNSLN 96
                                                         +N++I   V N L 
Sbjct: 173 SEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLT 232

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
            +   ++  M   G+  D  T   +L  C       L + +H+L  K  +   I   N+L
Sbjct: 233 ERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTL 292

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP------ 210
           +D YSKCG +  +L  ++F  MGER++VSW SMIAG  + G    A RL  +M       
Sbjct: 293 LDMYSKCGDLDGAL--RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKL 350

Query: 211 ---------------------------------ERDAVSWNTILDGYAKAGEMNLAFELF 237
                                            E +    N ++D Y K G M+ A  +F
Sbjct: 351 DVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVF 410

Query: 238 EKIPHRNIVSWSTMVW-----------------------------------GYSKD---- 258
             +  ++I+SW+TM+                                    GYS D    
Sbjct: 411 STMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVA 470

Query: 259 ----------GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLK 308
                     G + +A+LLFD +P+K LV WT++ISGY   G   EA   +++M +AG++
Sbjct: 471 NALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIE 530

Query: 309 PDDGTLISILAACAESGLLGLGMK-VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367
           PD+ + ISIL AC+ SGLL  G +  +   N +  +        +VD+ ++ G+L  A  
Sbjct: 531 PDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYE 590

Query: 368 VFNGM-TKKDLVSWNAMLYGLAMHGQGEKALGLFSRM 403
               +    D   W A+L G  ++   E A  +  R+
Sbjct: 591 FIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERV 627



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 142/337 (42%), Gaps = 72/337 (21%)

Query: 24  LHKCK---NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LH C    +L+  K +   I   +++ + ++   L+     C  M  A  VF+ +   D+
Sbjct: 359 LHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDI 418

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +NT+I                       +  D+ T   +L AC   +     + IH  
Sbjct: 419 ISWNTMIGE---------------------LKPDSRTMACILPACASLSALERGKEIHGY 457

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           I + GY  D  V N+L+D Y KCGV+G  LA+ LF  +  +D+VSW  MI+G    G  +
Sbjct: 458 ILRNGYSSDRHVANALVDLYVKCGVLG--LARLLFDMIPSKDLVSWTVMISGYGMHGYGN 515

Query: 201 EARRLFDEMP----ERDAVSWNTIL----------------------------------- 221
           EA   F+EM     E D VS+ +IL                                   
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 222 -DGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDMEMAKLLFDRM----PAKT 275
            D  ++ G ++ A+E  E +P   +   W  ++ G     D+E+A+ + +R+    P  T
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENT 635

Query: 276 LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
              + ++ + YAE    +E  R+ +++ + GL+ + G
Sbjct: 636 GY-YVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPG 671


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 168/467 (35%), Positives = 268/467 (57%), Gaps = 8/467 (1%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           ++ I A + +     D F+ + LI+S +      V+ A ++F      ++  WN++I G 
Sbjct: 23  LKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGY 82

Query: 194 VKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
                   A  L+ +M       ++ ++  +L    K   +    EL  +I    +   +
Sbjct: 83  SISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFET 142

Query: 250 TMVWG----YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            +V G    Y+  G M+ A ++FD MP      W+ ++SGYA+ G A EA +L+ +M+  
Sbjct: 143 PLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAE 202

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            +  D  TL S++  C + G L LG  VH+ ++K   K +  +  ALV MY+KCGSLDNA
Sbjct: 203 NVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNA 262

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
           + VF GM ++D+ +W+ M+ G A+HG GEKAL LF  MK     P+  TF  VL AC+H+
Sbjct: 263 LKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHS 322

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT 485
           G ++KG Q F +M  +Y I PQ++HYGCM+DL  R+G +  A + +Q+MP+EPN ++W T
Sbjct: 323 GLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRT 382

Query: 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545
           LLGAC+ H   +L E +   +++L  S P NY ++SN++A+ G W+ V  VR  MK    
Sbjct: 383 LLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWSSVCQVRSLMKDKAP 442

Query: 546 QKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
           +K  G SS+E++  VH+F + D+ HP+ E+IY M++ + + LK VGH
Sbjct: 443 KKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVGH 489



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/408 (26%), Positives = 202/408 (49%), Gaps = 19/408 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLI--SSLALCRQMGLAIKVFNDIQDPDVH 81
           + +C  +   K + A +++ +L +D ++  KLI  S++ L   +  A ++F+    P++ 
Sbjct: 14  IKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLF 73

Query: 82  LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           ++NT+IR    +     A  ++ DM   G+  +++T+ F+LKAC         Q +H+ I
Sbjct: 74  MWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQI 133

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
            K G   +  + N LI  Y+ CG   +  A  +F  M E D  SW++M++G  + G+  E
Sbjct: 134 VKVGLDFETPLVNGLIKLYAACGC--MDYACVMFDEMPEPDSASWSTMVSGYAQNGQAVE 191

Query: 202 ARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVW 253
           A +LF EM       DA +  +++      G ++L   +   +       ++V  + +V 
Sbjct: 192 ALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVG 251

Query: 254 GYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            YSK G ++ A  +F  M  + +  W+ +I+GYA  G  ++A +L+D M+ +   P+  T
Sbjct: 252 MYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVT 311

Query: 314 LISILAACAESGLLGLGMKVHASI-NKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
             S+L+AC+ SGL+  G ++  ++  +Y+          +VD++ + G + +A      M
Sbjct: 312 FTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTM 371

Query: 373 -TKKDLVSWNAMLYGLAMHGQGEKALG-LFSR--MKDEGFGPDKYTFV 416
             + ++V W  +L     HG   K LG   SR  +K +   P+ Y  V
Sbjct: 372 PIEPNVVLWRTLLGACKTHGY--KDLGEHISRKILKLDPSSPENYVLV 417


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 191/569 (33%), Positives = 300/569 (52%), Gaps = 10/569 (1%)

Query: 38  AQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97
           A + KL    D ++   LI   ++C     A +VF+ I+  D+  +  ++   V+N    
Sbjct: 169 ACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFE 228

Query: 98  QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157
           ++ ++F  M+  G   +NFT+  +LKAC G   F++ + +H   +K  Y  ++FV   LI
Sbjct: 229 ESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELI 288

Query: 158 DSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE----RD 213
           D Y K G V  +L  ++F  M + D++ W+ MIA   +  +  EA  +F  M       +
Sbjct: 289 DLYIKSGDVDDAL--QVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEMAKLLFD 269
             +  ++L   A   ++ L  ++   +       N+   + ++  Y+K G ME +  LF 
Sbjct: 347 QFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFS 406

Query: 270 RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329
             P  T V W  +I GY + G  ++A  L+  M E  ++  + T  S+L ACA    L  
Sbjct: 407 ESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEP 466

Query: 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM 389
           G ++H+   K  +  NT V NAL+DMYAKCG++ +A  VF+ + + D VSWNAM+ G ++
Sbjct: 467 GSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSV 526

Query: 390 HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449
           HG   +AL  F  M +    PDK TFVG+L AC++AG +D+G  YF SM  +Y I P  E
Sbjct: 527 HGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAE 586

Query: 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509
           HY CM+ LLGRSG L +A +LV  +P EP+ ++W  LL AC  HN VEL       ++ +
Sbjct: 587 HYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEI 646

Query: 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQL 569
           +  D   + +LSNI+A    W  VA++R  MK+   +K  G S +E    VH FSV D  
Sbjct: 647 EPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTS 706

Query: 570 HPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           HP ++ I  M+  L    +  G+    S+
Sbjct: 707 HPDTKLINGMLEWLNMKARNEGYVPDFSS 735



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 217/435 (49%), Gaps = 14/435 (3%)

Query: 68  AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127
           A K+F+++ D +   + TLI+   Q    ++A  +F  +Q +G   + F +  +LK    
Sbjct: 98  AAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVS 157

Query: 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187
             W  L   +HA +YK G+  D FV  +LID YS CG      A+++F ++  +D+VSW 
Sbjct: 158 AEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGY--AECARQVFDAIEYKDMVSWT 215

Query: 188 SMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFEL----FEK 239
            M+A  V+     E+ +LF  M     + +  ++ ++L         N+   +    F+ 
Sbjct: 216 GMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKT 275

Query: 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299
                +     ++  Y K GD++ A  +F+ MP   ++PW+ +I+ YA+   ++EA  ++
Sbjct: 276 SYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMF 335

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M    + P+  TL S+L ACA    L LG ++H  + K     N  V NAL+DMYAKC
Sbjct: 336 CRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKC 395

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
           G ++N++ +F+       VSWN ++ G    G GEKAL LF  M +      + T+  VL
Sbjct: 396 GRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVL 455

Query: 420 CACTHAGFIDKGVQ-YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478
            AC     ++ G Q +  S++  Y     V +   +ID+  + G +K+A RLV  M  E 
Sbjct: 456 RACAGIAALEPGSQIHSLSVKTIYDKNTVVGN--ALIDMYAKCGNIKDA-RLVFDMLREH 512

Query: 479 NAIIWGTLLGACRKH 493
           + + W  ++     H
Sbjct: 513 DQVSWNAMISGYSVH 527



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 189/403 (46%), Gaps = 21/403 (5%)

Query: 11  FSKRRLLEEKLQN------LHKCKNL---NQTKQLFAQIIKLDLQRDPYIAPKLISSLAL 61
           FS+ R++  K  N      L  C  L   N  K +     K     + ++  +LI     
Sbjct: 234 FSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIK 293

Query: 62  CRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121
              +  A++VF ++   DV  ++ +I    Q+  + +A  +F  M+   V  + FT   L
Sbjct: 294 SGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASL 353

Query: 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER 181
           L+AC       L   IH  + K G   ++FV N+L+D Y+KCG +  SL  +LF      
Sbjct: 354 LQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL--QLFSESPNC 411

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDA----VSWNTILDGYAKAGEMNLAFEL- 236
             VSWN++I G V+ G   +A  LF +M E       V+++++L   A    +    ++ 
Sbjct: 412 TDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIH 471

Query: 237 ---FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAK 293
               + I  +N V  + ++  Y+K G+++ A+L+FD +     V W  +ISGY+  G+  
Sbjct: 472 SLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYG 531

Query: 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS-INKYRFKCNTNVCNAL 352
           EA + ++ M E   KPD  T + IL+AC+ +GLL  G     S + +Y  +        +
Sbjct: 532 EALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCM 591

Query: 353 VDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGE 394
           V +  + G LD A  + + +  +  ++ W A+L    +H   E
Sbjct: 592 VWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVE 634



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 174/370 (47%), Gaps = 45/370 (12%)

Query: 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241
           D+ + N ++   VK   L +A +LFDEMP+R+ VS+ T++ GY++    + A  LF ++ 
Sbjct: 78  DLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQ 137

Query: 242 ----HRNIVSWSTMV-------WG----------------------------YSKDGDME 262
                 N   +ST++       W                             YS  G  E
Sbjct: 138 GEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAE 197

Query: 263 MAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
            A+ +FD +  K +V WT +++ Y E    +E+ +L+ +M   G KP++ T  S+L AC 
Sbjct: 198 CARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACV 257

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
              +  +G  VH    K  +     V   L+D+Y K G +D+A+ VF  M K D++ W+ 
Sbjct: 258 GLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSF 317

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442
           M+   A   Q E+A+ +F RM+     P+++T   +L AC     +  G Q    + +  
Sbjct: 318 MIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK-V 376

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRKHNAVEL 498
           G+   V     ++D+  + GR++ +L+L    P    V  N +I G  + A     A+ L
Sbjct: 377 GLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVG-YVQAGNGEKALIL 435

Query: 499 AEEVLDCLIR 508
            +++L+C ++
Sbjct: 436 FKDMLECQVQ 445



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 155/326 (47%), Gaps = 11/326 (3%)

Query: 202 ARRLFDEMPERDAVSWNTILDGYAKAGEMN----LAFELFEKIPHRNIVSWSTMVWGYSK 257
           A+R     PE +   + ++L    + G+      L  E+ +K    ++ + + ++  Y K
Sbjct: 32  AQRTSHSSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVK 91

Query: 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISI 317
              +  A  LFD MP +  V +  +I GY++     EA  L+ +++  G + +     ++
Sbjct: 92  YDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTV 151

Query: 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377
           L     +    LG  VHA + K  F  +  V  AL+D Y+ CG  + A  VF+ +  KD+
Sbjct: 152 LKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDM 211

Query: 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437
           VSW  M+     +   E++L LFSRM+  GF P+ +TF  VL AC      + G +  + 
Sbjct: 212 VSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVG-KAVHG 270

Query: 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
                  L ++     +IDL  +SG + +AL++ + MP + + I W  ++    ++   E
Sbjct: 271 CAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMP-KDDVIPWSFMIA---RYAQSE 326

Query: 498 LAEEVLDCLIRLKGS--DPGNYTMLS 521
            +EE ++   R++     P  +T+ S
Sbjct: 327 QSEEAIEMFCRMRRGLVLPNQFTLAS 352


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 318/585 (54%), Gaps = 14/585 (2%)

Query: 25  HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           H C++ +  +Q+ + I+K+  ++  Y    L+   A C ++  A  VF  +   +   +N
Sbjct: 114 HACRH-DLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWN 172

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
            LI   VQ      AF +   MQ++GV  ++ T+  LL   +G  ++ L   +H  I K 
Sbjct: 173 ALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKH 232

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF-MSMGERDIVSWNSMIAGLVKGGELSEAR 203
           G      + N+ + +YS+CG++    AK++F  ++G RD+V+WNSM+   +   +  +A 
Sbjct: 233 GLEFYNALCNATLTAYSECGLL--EDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAF 290

Query: 204 RLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGY 255
            LF EM     E D  ++  ++     A   N        +  R    ++   + ++  Y
Sbjct: 291 NLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMY 350

Query: 256 SK--DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT 313
            K  +  ME A  LF  M +K  V W  I++G+++ G +++A +L+  M  +  + DD  
Sbjct: 351 LKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMRSSLEEIDDYA 410

Query: 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373
             ++L +C++  +L LG ++H    K  F  N  V ++L+ MY+KCG +++A   F   T
Sbjct: 411 YSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTT 470

Query: 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433
           K+  ++WN++++  A HGQG+ AL LFS M++     D  TFV VL AC+H G +++G  
Sbjct: 471 KESSITWNSIMFAYAQHGQGDVALDLFSIMREREVKLDHVTFVAVLTACSHVGLVEQGRC 530

Query: 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH 493
              SME DYGI P++EHY C +DL GR+G L+EA  L+ SMP +PNA++  TLLGACR  
Sbjct: 531 VLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRAC 590

Query: 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASS 553
             +ELA +V   L+ ++  +   Y +LSN++     W+  A+V   M++ + +K  G S 
Sbjct: 591 GNIELAAQVASQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSW 650

Query: 554 VEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
           +EV NEVH F   D+ HP SE +YQ++  L +++K +   A   +
Sbjct: 651 IEVKNEVHAFKAEDRSHPYSEDVYQILGELMEEMKRLHSLASFDS 695



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/365 (30%), Positives = 184/365 (50%), Gaps = 13/365 (3%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           V + H   +K G    I+V N+++  YSKC    ++LA KLF  M  +D V+WN+MI G 
Sbjct: 18  VFLTHCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGY 77

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNL---AFELFEKIPH-RNI 245
           V+ G L  A      M  R    D  ++ +IL G A A   +L      L  KI + +++
Sbjct: 78  VESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSV 137

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
            + S ++  Y+K   +E A  +F  MP +  V W  +I G+ + G    A  L D M++ 
Sbjct: 138 YAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKE 197

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G++ +DGT   +L          L M++H  I K+  +    +CNA +  Y++CG L++A
Sbjct: 198 GVRVEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDA 257

Query: 366 MSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424
             VF+G    +DLV+WN+ML    +H + E A  LF  M+  GF PD YT+  V+ AC  
Sbjct: 258 KRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFA 317

Query: 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR--SGRLKEALRLVQSMPVEPNAII 482
           A   + G + F+++    G+   V     +I +  +  +  ++ AL L  SM    + + 
Sbjct: 318 AAHKNYG-KSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMK-SKDRVS 375

Query: 483 WGTLL 487
           W ++L
Sbjct: 376 WNSIL 380



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 226/478 (47%), Gaps = 25/478 (5%)

Query: 39  QIIKLDLQRDPYIAPKLISSLALCRQ--MGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN 96
           Q  K  +    Y+A  ++   + C    + LA K+F+++   D   +NT+I   V++   
Sbjct: 24  QAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNL 83

Query: 97  AQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156
             A+     M+ +G   D +T+  +LK         L Q +H+LI K GY   ++  ++L
Sbjct: 84  GAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSAL 143

Query: 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVS 216
           +D Y+KC    V  A  +F  M  R+ VSWN++I G V+ G+   A  L D M +++ V 
Sbjct: 144 LDMYAKCE--RVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCM-QKEGVR 200

Query: 217 WN--------TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM----VWGYSKDGDMEMA 264
                     T+LDG        L  +L  KI    +  ++ +    +  YS+ G +E A
Sbjct: 201 VEDGTFAPLLTLLDG---DKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDA 257

Query: 265 KLLFD-RMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           K +FD  +  + LV W  ++  Y      ++A  L+ +M+  G +PD  T   +++AC  
Sbjct: 258 KRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFA 317

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG--SLDNAMSVFNGMTKKDLVSWN 381
           +     G   HA + K   + +  +CNAL+ MY K    S++ A+++F+ M  KD VSWN
Sbjct: 318 AAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWN 377

Query: 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441
           ++L G +  G  E AL LF  M+      D Y +  VL +C+    +  G Q  + +   
Sbjct: 378 SILTGFSQMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLG-QQIHLLTVK 436

Query: 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELA 499
            G          +I +  + G +++A +  +    E ++I W +++ A  +H   ++A
Sbjct: 437 TGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKE-SSITWNSIMFAYAQHGQGDVA 493



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 138/290 (47%), Gaps = 21/290 (7%)

Query: 249 STMVWGYSK--DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG 306
           + +++ YSK   GD+ +A  LFD MP K  V W  +I+GY E G    A      M+  G
Sbjct: 38  NNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRG 97

Query: 307 LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366
            + D  T  SIL   A +    LG +VH+ I K  ++ +    +AL+DMYAKC  +++A 
Sbjct: 98  FQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAY 157

Query: 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426
            VF GM  ++ VSWNA++ G    G  + A  L   M+ EG   +  TF  +L       
Sbjct: 158 DVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLLT------ 211

Query: 427 FIDKGVQYFYSMERDYGILPQ-VEHYG--CMIDLLGRS--GRLKEALRLVQSMPVEPNAI 481
            +D    Y  +M+    I+   +E Y   C   L   S  G L++A R+        + +
Sbjct: 212 LLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLV 271

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYT---MLSNIFAA 526
            W ++L A   H+     E+  +  + ++  G +P  YT   ++S  FAA
Sbjct: 272 TWNSMLVAYLVHDK---DEDAFNLFLEMQGFGFEPDIYTYTCVISACFAA 318


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 272/468 (58%), Gaps = 10/468 (2%)

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
           +Q IHA I   G  G      + + S++      +S  ++LF S+ + D   ++S+I   
Sbjct: 35  LQQIHARIIITG-LGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLT 93

Query: 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP-HRNIVSW---- 248
            K     E+   +  M   +  S N       K+     AF + E I  H  I  +    
Sbjct: 94  SKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDA 153

Query: 249 ---STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              + +V  Y+K G + +A+ +FD+MP KT+V W  +ISGY + G  KEA  L+  M++ 
Sbjct: 154 YVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDL 213

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
           G+KPD  T +S+L+ACA+ G +GLG  VH  I +  F  N  +  AL++MY++CG++  A
Sbjct: 214 GVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKA 273

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF+ M +K++V+W AM+ G  MHG G +A+ LF+ M  +G  P+  TFV VL AC HA
Sbjct: 274 REVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHA 333

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ-SMPVEPNAIIWG 484
           G +D+G Q F +M+++YG++P VEH  CM+D+LGR+G L EA + ++ + P EP   +W 
Sbjct: 334 GLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWT 393

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            +LGAC+ H   +L  EV + L+ ++  +PG+Y MLSNI+A  G  ++V  +R  M + R
Sbjct: 394 AMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNR 453

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +K  G S+++VD++V+ FS+ D+ HPK+ QIY  ++ L    +  G+
Sbjct: 454 LKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCREAGY 501



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 190/373 (50%), Gaps = 14/373 (3%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLIS-SLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           L   +Q+ A+II   L R   +  KL+S + A    +    ++F  I  PD  L+++LI 
Sbjct: 32  LKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLIT 91

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
              + S   ++   +  M    + + N+T+  ++K+      F + + IH  +Y CGY  
Sbjct: 92  LTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGL 151

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           D +V  +L+  Y+K G   V +A+K+F  M E+ +V+WNSMI+G  + G   EA  LF  
Sbjct: 152 DAYVQAALVSFYAKSG--HVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFL 209

Query: 209 MPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHR----NIVSWSTMVWGYSKDGD 260
           M +     D+ ++ ++L   A+ G + L F + E I       N+V  + ++  YS+ G+
Sbjct: 210 MQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGN 269

Query: 261 MEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320
           +  A+ +FD M  K +V WT +ISGY   G   +A  L+++M   G +P++ T +++L+A
Sbjct: 270 VSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSA 329

Query: 321 CAESGLLGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379
           CA +GL+  G ++  ++ + Y    +      +VDM  + G L+ A       + K+   
Sbjct: 330 CAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAP 389

Query: 380 --WNAMLYGLAMH 390
             W AML    MH
Sbjct: 390 AVWTAMLGACKMH 402


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 188/596 (31%), Positives = 313/596 (52%), Gaps = 49/596 (8%)

Query: 47  RDPYIAPKLISSLA---LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVF 103
           R+      L+S+LA   L R M    ++F  +   D   YN L+    +   +A+A   +
Sbjct: 75  RNLVTGNSLLSALARAGLVRDME---RLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAY 131

Query: 104 LDM--QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYS 161
           + +   E GV     T   ++   +      L + +H  I + G+    F  + L+D Y+
Sbjct: 132 VALLRDEAGVRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYA 191

Query: 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTIL 221
           K G +G   A+++F  M  +++V  N+MI GL++   ++EAR LF+ + ERD+++W T++
Sbjct: 192 KVGPIGD--ARRVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMV 249

Query: 222 DGYAKAGEMNLAFELFEKIPHR-------------------------------------- 243
            G  + G  + A ++F ++                                         
Sbjct: 250 TGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYE 309

Query: 244 -NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM 302
            N+   S +V  YSK   + +A+ +F RM  K ++ WT +I GY + G  +EA R++ +M
Sbjct: 310 DNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEM 369

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           +  G+KPDD TL S++++CA    L  G + H        +    V NALV +Y KCGS+
Sbjct: 370 QRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSI 429

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
           ++A  +F+ M+  D VSW A++ G A  G+ ++ + LF +M  +G  PD  TF+GVL AC
Sbjct: 430 EDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSAC 489

Query: 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII 482
           + +G +DKG  YF+SM++D+ I+P  +HY CMIDL  RSG LK+A   ++ MP  P+A  
Sbjct: 490 SRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFG 549

Query: 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542
           W TLL ACR    +E+ +   + L++L   +P +Y +L ++ A+ G+WN VA +R  M+ 
Sbjct: 550 WATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRD 609

Query: 543 TRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSA 598
            + +K  G S ++  N+VH FS  DQ HP S  IY+ +  L   +   G+   +S+
Sbjct: 610 RQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSS 665



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/470 (25%), Positives = 221/470 (47%), Gaps = 82/470 (17%)

Query: 133 LVQMIHALIYKC-GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIA 191
           L   +HALI +   +    ++ N+L+ +Y+  G++    A+++F +M  R++V+ NS+++
Sbjct: 28  LTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLL--PHARRVFDAMPGRNLVTGNSLLS 85

Query: 192 GLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK------------------------- 226
            L + G + +  RLF  +P+RDAVS+N +L G+++                         
Sbjct: 86  ALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSR 145

Query: 227 ---AGEMNLAFELFEKIPHRNI-------------VSWSTMVWGYSKDGDMEMAKLLFDR 270
              +G + +A  L ++   R +              + S +V  Y+K G +  A+ +FD 
Sbjct: 146 ITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDE 205

Query: 271 MPAKTLV-------------------------------PWTIIISGYAEKGMAKEAARLY 299
           M  K +V                                WT +++G  + G+  EA  ++
Sbjct: 206 MEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVF 265

Query: 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359
            +M   G+  D  T  SIL AC     L  G ++HA I +  ++ N  V +ALVDMY+KC
Sbjct: 266 RRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKC 325

Query: 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419
            S+  A +VF  M  K+++SW AM+ G   +G GE+A+ +FS M+ +G  PD +T   V+
Sbjct: 326 RSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVI 385

Query: 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
            +C +   +++G Q F+ +    G+ P V     ++ L G+ G +++A RL   M    +
Sbjct: 386 SSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH-D 443

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRL--KGSDPGNYTMLSNIFAAT 527
            + W  L+    +      A+E +D   ++  KG  P   T +  + A +
Sbjct: 444 QVSWTALVMGYAQFGK---AKETIDLFEKMLSKGVKPDGVTFIGVLSACS 490



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 138/327 (42%), Gaps = 46/327 (14%)

Query: 30  LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA 89
           L + KQ+ A I +   + + ++   L+   + CR + LA  VF  +   ++  +  +I  
Sbjct: 293 LEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVG 352

Query: 90  CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGD 149
             QN    +A RVF +MQ  G+  D+FT   ++ +C            H L    G    
Sbjct: 353 YGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPY 412

Query: 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209
           + V N+L+  Y KCG   +  A +LF  M   D VSW +++ G  + G+  E   LF++M
Sbjct: 413 VTVSNALVTLYGKCG--SIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKM 470

Query: 210 PER----DAVS------------------------------------WNTILDGYAKAGE 229
             +    D V+                                    +  ++D Y+++G 
Sbjct: 471 LSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGW 530

Query: 230 MNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDMEMAKLLFD---RMPAKTLVPWTIIISG 285
           +  A E  +++P   +   W+T++      GDME+ K   +   ++  +    + ++ S 
Sbjct: 531 LKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSM 590

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDG 312
           +A KG   + A+L   M +  +K + G
Sbjct: 591 HASKGEWNDVAKLRRGMRDRQVKKEPG 617


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 183/579 (31%), Positives = 290/579 (50%), Gaps = 75/579 (12%)

Query: 86  LIRACVQNSLNAQAFRVFLDM---QEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           ++++ +  S   Q F+    +      G+   + T  +LL+ C       L + +H  + 
Sbjct: 18  IVKSLLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGKWVHLHLK 77

Query: 143 KCGY-FGDIFVPNSLIDSYSKCG-----------------------------VVGVSLAK 172
             G    + F+ N LI+ YSKCG                             +  +  A+
Sbjct: 78  VTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPAR 137

Query: 173 KLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWN-------------- 218
           KLF  M E+D+VSWN+M+    K G  ++A R + E+  R  + +N              
Sbjct: 138 KLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYREL-RRLGIGYNEYSFAGLLNICVKV 196

Query: 219 --------------------------TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMV 252
                                     ++LD YAK  EM  A  LF+++  R++++W+TMV
Sbjct: 197 KELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMV 256

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
            GY++ GD+E A+ LFD MP K  V WT +I+GYA   +  +A  L+ +M    ++PD  
Sbjct: 257 SGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQF 316

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           T  S L A A    L  G ++H  + +   + NT V ++L+DMY+KCG L+    VF+ M
Sbjct: 317 TFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLM 376

Query: 373 TKK-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431
             K D+V WN ++  LA HG+G++A+ +F  M   G  PD+ T + +L AC+H+G + +G
Sbjct: 377 GDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEG 436

Query: 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491
           ++ + S+   +G++P  EHY C+IDLLGR+G     +  ++ MP +PN  IW  LLG CR
Sbjct: 437 LRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCR 496

Query: 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
            H  +E   EV + +I L       Y +LS+I AA G W  V NVR  M +   +K    
Sbjct: 497 MHGNIEFGREVAEKIIELDPQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAI 556

Query: 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590
           S +E++N+VH F+  D+LHP  E IY  +  L   ++ V
Sbjct: 557 SWIEIENKVHSFTASDRLHPLKEVIYLALKQLAGHMEEV 595



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 210/426 (49%), Gaps = 57/426 (13%)

Query: 16  LLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
            L   L N++ KC +     ++F ++      R+ Y    ++S  A   ++  A K+F+ 
Sbjct: 87  FLANHLINMYSKCGDYPSAYKVFDEMST----RNLYSWNGMLSGYAKLGKIKPARKLFDK 142

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134
           + + DV  +NT++ A  ++     A R + +++  G+  + +++  LL  C       L 
Sbjct: 143 MPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELS 202

Query: 135 QMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLV 194
           +  H  +   G+  ++ + +S++D+Y+KC  +G   A++LF  M  RD+++W +M++G  
Sbjct: 203 KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGD--ARRLFDEMIIRDVLAWTTMVSGYA 260

Query: 195 KGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI--------- 245
           + G++  AR LFD MPE++ V+W +++ GYA+    + A ELF K+   NI         
Sbjct: 261 QWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSS 320

Query: 246 ------------------------------VSWSTMVWGYSKDGDMEMAKLLFDRMPAK- 274
                                         +  S+++  YSK G +E+ +L+FD M  K 
Sbjct: 321 CLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKW 380

Query: 275 TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334
            +V W  IIS  A+ G  +EA +++D M   G+KPD  TLI +L AC+ SGL+  G++++
Sbjct: 381 DVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLY 440

Query: 335 ASINKYRFKCNTNVCN-----ALVDMYAKCGSLDNAMSVFNGM-TKKDLVSWNAMLYGLA 388
            SI      C+  + N      L+D+  + G  D  M+    M  K +   WNA+L    
Sbjct: 441 ESIT----SCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCR 496

Query: 389 MHGQGE 394
           MHG  E
Sbjct: 497 MHGNIE 502



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 84/194 (43%), Gaps = 11/194 (5%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDP-DVHLYNTLI 87
           +LN  KQ+   +I+ +++ +  +   LI   + C  + +   VF+ + D  DV L+NT+I
Sbjct: 330 SLNHGKQIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTII 389

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF 147
            +  Q+    +A ++F DM   G+  D  T   LL AC+          ++  I  C   
Sbjct: 390 SSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSC--- 446

Query: 148 GDIFVPNS-----LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
               +PN      LID   + G     + +   M     D + WN+++      G +   
Sbjct: 447 -HGVIPNQEHYACLIDLLGRAGHFDTLMNQLEKMPCKPNDEI-WNALLGVCRMHGNIEFG 504

Query: 203 RRLFDEMPERDAVS 216
           R + +++ E D  S
Sbjct: 505 REVAEKIIELDPQS 518


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 204/653 (31%), Positives = 313/653 (47%), Gaps = 112/653 (17%)

Query: 45  LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFL 104
           ++R+     + +SS      M  A+ +F +++  D  ++N +IR  V N L   A   + 
Sbjct: 56  VERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYH 115

Query: 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG 164
            M+  GV  DNFTYPF++KAC G       + +H  + K G   DI++ NSLI  Y+K G
Sbjct: 116 RMEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIG 175

Query: 165 VVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-------------- 210
              +  A+ +F  M  RD+VSWNSMI+G V  G+   +   F EM               
Sbjct: 176 C--IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGI 233

Query: 211 -------------------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245
                                    E D +   +++D YAK G M+ A  LF++I  ++I
Sbjct: 234 LGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSI 293

Query: 246 VSWSTMVWGYSKDGD-----------MEMAKLLFDRMPAKTLVP---------------- 278
           V+W+ M+ GYS +              E  KL  D +    L+P                
Sbjct: 294 VAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHG 353

Query: 279 -------------WTIIISGYAEKGMAKEAARLYDQMEEAG------------------- 306
                         T ++  Y E G  K A  L+ QM E                     
Sbjct: 354 FAIRNGFLPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRK 413

Query: 307 ------------LKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354
                       LKPD  T+ SIL A AE   L    ++H  + K +   NT V N++V 
Sbjct: 414 AMTLFQDLCNKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVF 473

Query: 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414
           MY KCG+L  A  +F+ MT KD++SWN ++   A+HG G  ++ LFS M+++GF P+  T
Sbjct: 474 MYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGST 533

Query: 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474
           FV +L +C+ AG +++G +YF SM+RDY I P +EHYGC++DL+GR+G L  A   ++ M
Sbjct: 534 FVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEM 593

Query: 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534
           P+ P A IWG+LL A R    VELAE   + ++ L+  + G Y +LSN++A  G W  V 
Sbjct: 594 PLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVE 653

Query: 535 NVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDL 587
            ++  MKK   +K  G S V++ ++   F   D+   +   +Y +++ + K +
Sbjct: 654 RIKFHMKKEGLEKSVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKI 706


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 310/565 (54%), Gaps = 10/565 (1%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94
           Q+ A ++KL  + +  +   LIS L+    +  A  VF+++++ D   +N++I   V N 
Sbjct: 224 QIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVING 283

Query: 95  LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPN 154
            + +AF  F +MQ  G    + T+  ++K+C       LV+++H    K G   +  V  
Sbjct: 284 QDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLT 343

Query: 155 SLIDSYSKCGVVGVSLAKKLFMSM-GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           +L+ + +KC  +  + +  LF  M G + +VSW +MI+G ++ G+  +A  LF  M  R+
Sbjct: 344 ALMVALTKCKEIDDAFS--LFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLM-RRE 400

Query: 214 AV-----SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLF 268
            V     +++TIL          +  E+ +    ++    + ++  + K G++  A  +F
Sbjct: 401 GVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF 460

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC-AESGLL 327
           + +  K ++ W+ +++GYA+ G  +EAA+++ Q+   G+KP++ T  SI+ AC A +  +
Sbjct: 461 ELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASV 520

Query: 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387
             G + HA   K R      V ++LV +YAK G++++A  +F    ++DLVSWN+M+ G 
Sbjct: 521 EQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGY 580

Query: 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447
           A HGQ +KAL +F  M+      D  TF+GV+ AC HAG + KG  YF  M  D+ I P 
Sbjct: 581 AQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPT 640

Query: 448 VEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLI 507
           +EHY CMIDL  R+G L +A+ ++  MP  P A +W  +L A R H  +EL +   + +I
Sbjct: 641 MEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKII 700

Query: 508 RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCD 567
            L+      Y +LSNI+AA G+W++  NVR  M K R +K  G S +EV N+ + F   D
Sbjct: 701 SLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGD 760

Query: 568 QLHPKSEQIYQMINTLGKDLKPVGH 592
             HP S+ IY  ++ L   L+ VG+
Sbjct: 761 LSHPLSDHIYSKLSELNTRLRDVGY 785



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 130/487 (26%), Positives = 241/487 (49%), Gaps = 30/487 (6%)

Query: 34  KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQN 93
           +Q+  Q +K  L     +   L+        +    +VF+++ D DV  +N+L+     N
Sbjct: 122 EQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWN 181

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
             N Q + +F  MQ +G   D +T   ++ A   +    +   IHAL+ K G+  +  V 
Sbjct: 182 RFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVC 241

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           NSLI   SK G+  +  A+ +F +M  +D VSWNSMIAG V  G+  EA   F+ M    
Sbjct: 242 NSLISMLSKSGM--LRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAG 299

Query: 214 A----VSWNTILDGYAKAGEMNLAFELFEKI------PHRNIVSWSTMVWGYSKDGDMEM 263
           A     ++ +++   A   E+ L   L  K        ++N++  + ++   +K  +++ 
Sbjct: 300 AKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVL--TALMVALTKCKEIDD 357

Query: 264 AKLLFDRMP-AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322
           A  LF  M   +++V WT +ISGY + G   +A  L+  M   G+KP+  T  +IL    
Sbjct: 358 AFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQH 417

Query: 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA 382
              +     ++HA + K  ++ +++V  AL+D + K G++ +A+ VF  +  KD+++W+A
Sbjct: 418 AVFI----SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSA 473

Query: 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKGVQYFYSMERD 441
           ML G A  G+ E+A  +F ++  EG  P+++TF  ++ ACT     +++G Q+       
Sbjct: 474 MLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQF-----HA 528

Query: 442 YGILPQVEHYGC----MIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVE 497
           Y I  ++ +  C    ++ L  + G ++ A  + +    E + + W +++    +H   +
Sbjct: 529 YAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQAK 587

Query: 498 LAEEVLD 504
            A EV +
Sbjct: 588 KALEVFE 594



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/475 (26%), Positives = 220/475 (46%), Gaps = 26/475 (5%)

Query: 67  LAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126
            A ++F+     D+  +N L+    +     +A  +F+ +   G+  D++T   +L  C 
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSW 186
           G     + + +H    KCG    + V NSL+D Y+K G   V   +++F  MG+RD+VSW
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTG--NVRDGRRVFDEMGDRDVVSW 171

Query: 187 NSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH 242
           NS++ G        +   LF  M       D  + +T++   A  G + +  ++   +  
Sbjct: 172 NSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK 231

Query: 243 RNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL 298
                  +  ++++   SK G +  A+++FD M  K  V W  +I+G+   G   EA   
Sbjct: 232 LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFET 291

Query: 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358
           ++ M+ AG KP   T  S++ +CA    LGL   +H    K     N NV  AL+    K
Sbjct: 292 FNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTK 351

Query: 359 CGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417
           C  +D+A S+F+ M   + +VSW AM+ G   +G  ++A+ LFS M+ EG  P+ +T+  
Sbjct: 352 CKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYST 411

Query: 418 VLCACTHAGFID----KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473
           +L    HA FI     + ++  Y      G          ++D   + G + +A+++ + 
Sbjct: 412 IL-TVQHAVFISEIHAEVIKTNYEKSSSVGT--------ALLDAFVKIGNISDAVKVFEL 462

Query: 474 MPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528
           +  + + I W  +L    +    E A ++   L R +G  P  +T  S I A T 
Sbjct: 463 IETK-DVIAWSAMLAGYAQAGETEEAAKIFHQLTR-EGIKPNEFTFCSIINACTA 515



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/430 (22%), Positives = 192/430 (44%), Gaps = 50/430 (11%)

Query: 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI------PHRNIV 246
           L++  +   A++LFD+ P RD    N +L  Y++  +   A  LF  +      P    +
Sbjct: 46  LLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTM 105

Query: 247 SW---------------------------------STMVWGYSKDGDMEMAKLLFDRMPA 273
           S                                  +++V  Y+K G++   + +FD M  
Sbjct: 106 SCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGD 165

Query: 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333
           + +V W  +++GY+      +   L+  M+  G +PD  T+ +++AA A  G + +GM++
Sbjct: 166 RDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQI 225

Query: 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG 393
           HA + K  F+    VCN+L+ M +K G L +A  VF+ M  KD VSWN+M+ G  ++GQ 
Sbjct: 226 HALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQD 285

Query: 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG-VQYFYSMERDYGILPQVEHYG 452
            +A   F+ M+  G  P   TF  V+ +C  A   + G V+  +      G+        
Sbjct: 286 LEAFETFNNMQLAGAKPTHATFASVIKSC--ASLKELGLVRVLHCKTLKSGLSTNQNVLT 343

Query: 453 CMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512
            ++  L +   + +A  L   M    + + W  ++    ++   + A  +   L+R +G 
Sbjct: 344 ALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFS-LMRREGV 402

Query: 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPK 572
            P ++T  + +      +  ++ +  ++ KT  +K S   +  +D  V   ++ D +   
Sbjct: 403 KPNHFTYSTILTVQHAVF--ISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAV--- 457

Query: 573 SEQIYQMINT 582
             +++++I T
Sbjct: 458 --KVFELIET 465



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 74/149 (49%), Gaps = 13/149 (8%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++ Q KQ  A  IKL L     ++  L++  A    +  A ++F   ++ D+  +N++I 
Sbjct: 519 SVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMIS 578

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-------NGKNWFHLVQMIHALI 141
              Q+    +A  VF +MQ++ +  D  T+  ++ AC        G+N+F+++   H + 
Sbjct: 579 GYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHIN 638

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170
               ++      + +ID YS+ G++G ++
Sbjct: 639 PTMEHY------SCMIDLYSRAGMLGKAM 661


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 171/518 (33%), Positives = 281/518 (54%), Gaps = 17/518 (3%)

Query: 84  NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC---NGKNWFHLVQMIHAL 140
           NT  R   Q  L     ++   M + G+  D++     L  C      ++    Q++   
Sbjct: 48  NTETRCSKQEELK----QIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDG 103

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA--KKLFMSMGERDIVSWNSMIAGLVKGGE 198
             +     D F+ N +I  +S       SL   +++       +  ++ S++        
Sbjct: 104 FDR----PDTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSA 159

Query: 199 LSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
           L E  ++  ++     E D  + N++++ YA  G   LA  LF++IP  + VSW++++ G
Sbjct: 160 LEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKG 219

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y+K G M++A  LF +M  K  + WT +ISGY + GM KEA +L+ +M+ + ++PD+ +L
Sbjct: 220 YAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSL 279

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            + L+ACA+ G L  G  +H+ + K R + ++ +   L+DMYAKCG +  A+ VF  + +
Sbjct: 280 ANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQR 339

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K + +W A++ G A HG G +A+  F  M+  G  P+  TF  VL AC++ G +++G   
Sbjct: 340 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLI 399

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           FY+MERDY + P +EHYGC++DLL R+G L EA R +Q MP++PNA+IWG LL ACR H 
Sbjct: 400 FYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 459

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
            +EL EE+ + LI +     G Y   +NI A    W+K A  R  MK+    K  G S++
Sbjct: 460 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTI 519

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            ++   HEF   D+ HP+ E+I      + + L+  G+
Sbjct: 520 SLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGY 557



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/409 (28%), Positives = 193/409 (47%), Gaps = 46/409 (11%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLIS---SLALCRQMGLAIKVFNDIQDPDVHL 82
           +C    + KQ+ A+++K  L +D Y   K +S   S      +  A  VF+    PD  L
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFL 111

Query: 83  YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIY 142
           +N +IR    +    ++  ++  M       + +T+P LLKAC+  +       IHA I 
Sbjct: 112 WNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQIT 171

Query: 143 KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEA 202
           K GY  D++  NSLI+SY+  G     LA  LF  + + D VSWNS+I G  K G++  A
Sbjct: 172 KLGYENDVYAVNSLINSYAATG--NFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIA 229

Query: 203 RRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI----------------- 245
             LF +M E++A+SW T++ GY +AG    A +LF ++ + ++                 
Sbjct: 230 LTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQL 289

Query: 246 ----------------------VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283
                                 V    ++  Y+K GDM  A  +F  +  K++  WT +I
Sbjct: 290 GALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALI 349

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK-YRF 342
           SGYA  G  +EA   + +M++ G+KP+  T  ++L AC+ +GL+  G  +  ++ + Y  
Sbjct: 350 SGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNL 409

Query: 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMH 390
           K        +VD+ ++ G LD A      M  K + V W A+L    +H
Sbjct: 410 KPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIH 458


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 195/586 (33%), Positives = 309/586 (52%), Gaps = 18/586 (3%)

Query: 28  KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLI 87
           ++L   +++ A +++    +D + A  L+   +    + +A  VF  +   DV  +N  I
Sbjct: 216 RDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFI 275

Query: 88  RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV--QMIHALIYKCG 145
             CV +  +  A  + L M+  G+  + FT   +LKAC G         + IH  + K  
Sbjct: 276 SGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKAC 335

Query: 146 YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRL 205
              D ++  +L+D Y+K G++    A+K+F  +  +D++ WN++I+G   GG   E+  L
Sbjct: 336 ADSDDYIGVALVDMYAKYGLL--DDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSL 393

Query: 206 FDEMPERDAVSWNTILDGYAKA-------GEMNLAFELFEKIPHRNIVSWSTMVWG---- 254
           F  M +  +    T L    K+        +      L EKI     +S S +V G    
Sbjct: 394 FCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKI---GFLSDSHVVNGLIDS 450

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
           Y K   +  A  +F+   +  ++ +T +I+  ++    ++A +L+ +M   GL+PD   L
Sbjct: 451 YWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVL 510

Query: 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK 374
            S+L ACA       G +VHA + K +F  +    NALV  YAKCGS+++A   F+G+  
Sbjct: 511 SSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPD 570

Query: 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434
           K +VSW+AM+ GLA HG G++AL +F RM DE   P+  T   VLCAC HAG +D+   Y
Sbjct: 571 KGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGY 630

Query: 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN 494
           F SM+  +GI    EHY CMIDLLGR+G+L +A+ LV SMP E NA +WG LL A R H 
Sbjct: 631 FSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHR 690

Query: 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554
             EL +   + L  L+    G + +L+N +A+ G W++VA VR  MK ++ +K    S V
Sbjct: 691 DPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWV 750

Query: 555 EVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           E+ + VH F V D+ HP++  IY  +  LG  +   G+   L  ++
Sbjct: 751 ELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDL 796



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 123/503 (24%), Positives = 233/503 (46%), Gaps = 18/503 (3%)

Query: 35  QLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDI-QDPDVHLYNTLIRACVQN 93
           Q+ A  +   L  D ++A  L++       +  A +VF++  +D +   +N ++ A V+N
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180

Query: 94  SLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVP 153
              + A  +F +M   GV  + F +  ++ AC G       + +HA++ + GY  D+F  
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTA 240

Query: 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERD 213
           N+L+D YSK G   + +A  +F  + + D+VSWN+ I+G V  G    A  L  +M    
Sbjct: 241 NALVDMYSKLG--DIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 214 AVSWNTILDGYAKAGEMNLAFE----------LFEKIPHRNIVSWSTMVWGYSKDGDMEM 263
            V     L    KA     A            + +     +      +V  Y+K G ++ 
Sbjct: 299 LVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDD 358

Query: 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323
           A+ +F+ +P K L+ W  +ISG +  G   E+  L+ +M + G   +  TL ++L + A 
Sbjct: 359 ARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTAS 418

Query: 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAM 383
              +    +VHA   K  F  +++V N L+D Y KC  L  A  VF   +  +++++ +M
Sbjct: 419 LEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSM 478

Query: 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ-YFYSMERDY 442
           +  L+    GE A+ LF  M  +G  PD +    +L AC      ++G Q + + ++R +
Sbjct: 479 ITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKF 538

Query: 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEV 502
             +  V     ++    + G +++A      +P +   + W  ++G   +H   + A +V
Sbjct: 539 --MTDVFAGNALVYTYAKCGSIEDADLAFSGLP-DKGVVSWSAMIGGLAQHGHGKRALDV 595

Query: 503 LDCLIRLKGSDPGNYTMLSNIFA 525
              ++  + + P + T+ S + A
Sbjct: 596 FRRMVDERIA-PNHITLTSVLCA 617



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 145/532 (27%), Positives = 227/532 (42%), Gaps = 113/532 (21%)

Query: 55  LISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTD 114
           L+S  + CR  G A +VF++  DP    +++L+ A   N+L  +A   F  M+ +GV  +
Sbjct: 43  LLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCN 102

Query: 115 NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
            F  P +LK         L   +HA+    G  GDIFV N+L+  Y   G   V  A+++
Sbjct: 103 EFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIFVANALVAMYGGFGF--VDEARRV 157

Query: 175 FMSMG-ERDIVSWNSMIAGLVKGGELSEARRLFDEMP----------------------- 210
           F     +R+ VSWN M++  VK    S+A  LF EM                        
Sbjct: 158 FDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRD 217

Query: 211 ----------------ERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWG 254
                           ++D  + N ++D Y+K G++++A  +F K+P  ++VSW+     
Sbjct: 218 LEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNA---- 273

Query: 255 YSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314
                                       ISG    G  + A  L  QM+ +GL P+  TL
Sbjct: 274 ---------------------------FISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 315 ISIL--AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
            SIL   A A +G   LG ++H  + K     +  +  ALVDMYAK G LD+A  VF  +
Sbjct: 307 SSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWI 366

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
            +KDL+ WNA++ G +  G   ++L LF RM+ EG   ++ T   VL +      I    
Sbjct: 367 PRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTT 426

Query: 433 QYFYSMERDYGILPQV------------------------EH-------YGCMIDLLGRS 461
           Q  +++    G L                           EH       +  MI  L + 
Sbjct: 427 Q-VHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQC 485

Query: 462 GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510
              ++A++L   M    +EP+  +  +LL AC   +A E  ++V   LI+ K
Sbjct: 486 DHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRK 537



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 189/430 (43%), Gaps = 25/430 (5%)

Query: 119 PFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSM 178
           P L +    ++ F L   IHA + K G        N L+  YSKC + G   A+++F   
Sbjct: 9   PLLTRYAATQSLF-LGAHIHAHLLKSGLLHAF--RNHLLSFYSKCRLPGS--ARRVFDET 63

Query: 179 GERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK-AGEMNLAFELF 237
            +   VSW+S++          EA   F  M  R        L    K A +  L  ++ 
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQVH 123

Query: 238 EKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA-KTLVPWTIIISGYAEKGMA 292
                     +I   + +V  Y   G ++ A+ +FD     +  V W  ++S + +    
Sbjct: 124 AVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRC 183

Query: 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352
            +A  L+ +M  +G++P++     ++ AC  S  L  G KVHA + +  +  +    NAL
Sbjct: 184 SDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANAL 243

Query: 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412
           VDMY+K G +  A  VF  + K D+VSWNA + G  +HG  + AL L  +MK  G  P+ 
Sbjct: 244 VDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNV 303

Query: 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV-----EHYG-CMIDLLGRSGRLKE 466
           +T   +L           G   F    + +G + +      ++ G  ++D+  + G L +
Sbjct: 304 FTLSSIL-----KACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDD 358

Query: 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526
           A ++ + +P   + ++W  L+  C  H         L C +R +GSD  N T L+ +  +
Sbjct: 359 ARKVFEWIP-RKDLLLWNALISGC-SHGGCHGESLSLFCRMRKEGSDI-NRTTLAAVLKS 415

Query: 527 TGDWNKVANV 536
           T     +++ 
Sbjct: 416 TASLEAISDT 425



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 147/342 (42%), Gaps = 48/342 (14%)

Query: 14  RRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFN 73
           R  L   L++    + ++ T Q+ A   K+    D ++   LI S   C  +  A KVF 
Sbjct: 406 RTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFE 465

Query: 74  DIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHL 133
           +    ++  + ++I A  Q      A ++F++M  KG+  D F    LL AC   + +  
Sbjct: 466 EHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQ 525

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
            + +HA + K  +  D+F  N+L+ +Y+KCG   +  A   F  + ++ +VSW++MI GL
Sbjct: 526 GKQVHAHLIKRKFMTDVFAGNALVYTYAKCG--SIEDADLAFSGLPDKGVVSWSAMIGGL 583

Query: 194 VKGGE-----------------------------------LSEARRLFDEMPE-----RD 213
            + G                                    + EA+  F  M E     R 
Sbjct: 584 AQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRT 643

Query: 214 AVSWNTILDGYAKAGEMNLAFELFEKIPHR-NIVSWSTMVWGYSKDGDMEMAKL----LF 268
              ++ ++D   +AG+++ A EL   +P   N   W  ++       D E+ KL    LF
Sbjct: 644 EEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLF 703

Query: 269 DRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310
              P K+     ++ + YA  GM  E A++   M+++ +K +
Sbjct: 704 VLEPEKSGTH-VLLANTYASAGMWDEVAKVRKLMKDSKVKKE 744


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 187/616 (30%), Positives = 304/616 (49%), Gaps = 73/616 (11%)

Query: 17  LEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76
           L   +Q   K K L + KQL A +I        ++   L++  + C ++  A+K+F+ + 
Sbjct: 8   LAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMP 67

Query: 77  DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQM 136
             ++  +  +I    QNS  ++A R F  M+  G     F +   ++AC       + + 
Sbjct: 68  QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 127

Query: 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG 196
           +H L  K G   ++FV ++L D YSKCG                                
Sbjct: 128 MHCLALKFGIGSELFVGSNLEDMYSKCGA------------------------------- 156

Query: 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKI---------------- 240
             + +A ++F+EMP +D VSW  ++DGY+K GE   A   F+K+                
Sbjct: 157 --MFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTL 214

Query: 241 --------------PHRNIVSW---STMVWG------YSKDGDMEMAKLLFD-RMPAKTL 276
                          H ++V     S +  G      YSK GDME A  +F      + +
Sbjct: 215 GACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNV 274

Query: 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336
           V +T +I GY E    ++   ++ ++   G++P++ T  S++ ACA    L  G ++HA 
Sbjct: 275 VSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQ 334

Query: 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396
           + K  F  +  V + LVDMY KCG L++A+  F+ +     ++WN+++     HG G+ A
Sbjct: 335 VMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDA 394

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           +  F RM D G  P+  TF+ +L  C+HAG +++G+ YFYSM++ YG++P  EHY C+ID
Sbjct: 395 IKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVID 454

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           LLGR+GRLKEA   +  MP EPNA  W + LGACR H   E+ +   + L++L+  + G 
Sbjct: 455 LLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGA 514

Query: 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576
             +LSNI+A    W  V +VR++M+    +K  G S V+V  + H F   D  H +   I
Sbjct: 515 LVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAI 574

Query: 577 YQMINTLGKDLKPVGH 592
           Y+ ++ L   +K  G+
Sbjct: 575 YEKLDXLLDQIKAAGY 590



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 99/190 (52%), Gaps = 2/190 (1%)

Query: 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369
           D   L  ++   A++  L  G ++HA +    +   T + N LV+MY+KCG LD+A+ +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429
           + M +++LVSW AM+ GL+ + +  +A+  F  M+  G  P ++ F   + AC   G I+
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489
            G Q  + +   +GI  ++     + D+  + G + +A ++ + MP + + + W  ++  
Sbjct: 124 MGKQ-MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181

Query: 490 CRKHNAVELA 499
             K    E A
Sbjct: 182 YSKIGEFEEA 191


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  321 bits (822), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 198/662 (29%), Positives = 315/662 (47%), Gaps = 115/662 (17%)

Query: 49  PYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE 108
           P+I  ++  +  +C  + LA  +F+ I  P +H YN LIRA                 + 
Sbjct: 63  PHIICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRR 122

Query: 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168
           +    +N+T+PF+LKAC+        + +H    + G   D+FV  +L+D Y+KC     
Sbjct: 123 RLPQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCA--SF 180

Query: 169 SLAKKLFMSMGERDIVSWNSMIAG----------------------------------LV 194
             A  +F  M  RD+V+WN+M+AG                                  L 
Sbjct: 181 RHAATVFRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLA 240

Query: 195 KGGELSEAR-------RLFDEMPERDAVSWNT-ILDGYAKAGEMNLAFELFEKIPHRNIV 246
           + G LS+ R       R       +D V   T +LD YAK G +  A  +FE +  RN V
Sbjct: 241 QHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEV 300

Query: 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTI---------------------- 281
           +WS +V G+   G M  A  LF  M A+ L    P ++                      
Sbjct: 301 TWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHAL 360

Query: 282 ---------------IISGYAEKGMAKEAARLYDQ------------------------- 301
                          ++S YA+ G+  +A  L+DQ                         
Sbjct: 361 LAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEA 420

Query: 302 ------MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM 355
                 M+   ++PD  T++S++ AC+    L  G   H S+        T++CNAL+DM
Sbjct: 421 FRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDM 480

Query: 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415
           YAKCG +D +  +F+ M  +D+VSWN M+ G  +HG G++A  LF  MK +   PD  TF
Sbjct: 481 YAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTF 540

Query: 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475
           + ++ AC+H+G + +G ++F+ M   YGI P++EHY  M+DLL R G L EA + +Q MP
Sbjct: 541 ICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMP 600

Query: 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535
           ++ +  +WG LLGACR H  ++L ++V   + +L     GN+ +LSNIF+A G +++ A 
Sbjct: 601 LKADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAE 660

Query: 536 VRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAK 595
           VR+  K+   +K  G S +E++  +H F   D+ H +S +IYQ ++ +  D+  +G+ A 
Sbjct: 661 VRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRAD 720

Query: 596 LS 597
            S
Sbjct: 721 TS 722


>gi|297823227|ref|XP_002879496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325335|gb|EFH55755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 617

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 182/552 (32%), Positives = 304/552 (55%), Gaps = 23/552 (4%)

Query: 24  LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLY 83
           L KC ++NQ +++ AQ++   +++  ++ PK +           A  + +  ++P+ + +
Sbjct: 41  LKKCISVNQLREIQAQMLLHSVEKPNFLIPKAVE----LGDFNYASFLLSVTEEPNHYSF 96

Query: 84  NTLIRACVQNSLNAQ--AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALI 141
           N +IR  + N  N    A  ++  M+  G+  DNFTY F+  AC  +    + + +H+ +
Sbjct: 97  NYMIRG-LTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREEIGVGRSVHSSL 155

Query: 142 YKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSE 201
           +K G   D  + +SLI  Y+KCG+VG   A+K+F  + +R  VSWNSMI+G  + G   +
Sbjct: 156 FKVGLERDDHISHSLIMMYAKCGLVGY--ARKVFDEITDRVTVSWNSMISGYSEAGRAKD 213

Query: 202 ARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST-----MV 252
           A  LF +M E     D  +  ++L   A  G++     L EK+     +  ST     ++
Sbjct: 214 AMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTG-RLLEKMAITKKIGLSTFLGSKLI 272

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG 312
             Y K GD++ A+ +F++M  K  V W  +I+ Y++ G + EA +L+ +ME+ G+ PD G
Sbjct: 273 TMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEKTGVSPDAG 332

Query: 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372
           TL ++L+AC   G L LG ++    ++   + N  V   LVDMY KCG ++ A+ VF  M
Sbjct: 333 TLSTVLSACGSVGALELGKRIETHASEISLQHNIYVATGLVDMYGKCGHIEEALRVFEAM 392

Query: 373 TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432
             K+  +WNAM+   A  G  ++AL LF +M      P   TF+GVL AC HAG +D+G 
Sbjct: 393 PVKNEATWNAMITAYAHQGHAKEALLLFDQMP---VPPSDVTFIGVLSACVHAGLVDQGC 449

Query: 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK 492
           +YF+ M   +G++P++EHY  +IDLL R+G L EA   ++  P +P+ I+   +LGAC K
Sbjct: 450 RYFHEMSSLFGLVPKIEHYTNIIDLLSRAGLLDEAWEFMERFPGKPDEIMLAAILGACHK 509

Query: 493 HNAVELAEEVLDCLIRLK-GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551
              V + E+ +  L+ +K   + GNY + S + A    W++ A +R  M+     K  G 
Sbjct: 510 RKDVAIREKAMRMLMEMKEAKNAGNYVISSKVLADMKMWDESAKMRALMRDRGVVKTPGC 569

Query: 552 SSVEVDNEVHEF 563
           S +E++ E+ EF
Sbjct: 570 SWIEINGELMEF 581



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 188/384 (48%), Gaps = 26/384 (6%)

Query: 118 YPFLLKACNGKNWFHLVQ---MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174
           + FLLK C   N    +Q   ++H+          +  PN LI    + G    + A  L
Sbjct: 37  FLFLLKKCISVNQLREIQAQMLLHS----------VEKPNFLIPKAVELG--DFNYASFL 84

Query: 175 FMSMGERDIVSWNSMIAGLVK-----GGELSEARRLFDEMPERDAVSWNTILDGYAKAGE 229
                E +  S+N MI GL        G LS  RR+     + D  ++N +     K  E
Sbjct: 85  LSVTEEPNHYSFNYMIRGLTNIWNDHEGALSLYRRMKYSGLKPDNFTYNFVFIACGKREE 144

Query: 230 MNLA----FELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISG 285
           + +       LF+    R+     +++  Y+K G +  A+ +FD +  +  V W  +ISG
Sbjct: 145 IGVGRSVHSSLFKVGLERDDHISHSLIMMYAKCGLVGYARKVFDEITDRVTVSWNSMISG 204

Query: 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN 345
           Y+E G AK+A  L+ +MEE G +PD+ TL+S+L ACA  G L  G  +       +   +
Sbjct: 205 YSEAGRAKDAMDLFRKMEEEGFEPDERTLVSMLGACAHLGDLTTGRLLEKMAITKKIGLS 264

Query: 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405
           T + + L+ MY KCG LD+A  VFN M KKD V+WNAM+   + +G+  +A  LF  M+ 
Sbjct: 265 TFLGSKLITMYGKCGDLDSARRVFNQMIKKDRVAWNAMITVYSQNGKSSEAFKLFFEMEK 324

Query: 406 EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465
            G  PD  T   VL AC   G ++ G +   +   +  +   +     ++D+ G+ G ++
Sbjct: 325 TGVSPDAGTLSTVLSACGSVGALELG-KRIETHASEISLQHNIYVATGLVDMYGKCGHIE 383

Query: 466 EALRLVQSMPVEPNAIIWGTLLGA 489
           EALR+ ++MPV+ N   W  ++ A
Sbjct: 384 EALRVFEAMPVK-NEATWNAMITA 406


>gi|255572826|ref|XP_002527345.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533264|gb|EEF35017.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 687

 Score =  321 bits (822), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 192/599 (32%), Positives = 311/599 (51%), Gaps = 21/599 (3%)

Query: 21  LQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDV 80
           LQ   K  ++++ + + A IIK    +D  +   L++  A C  MG A K+F+ +   +V
Sbjct: 81  LQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGNARKIFDSLHRRNV 140

Query: 81  HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140
             +  L+   VQNS    A  VF DM E G    N+T    L AC+  N   L + +HA 
Sbjct: 141 VAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNACSAINSIKLGKQLHAF 200

Query: 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200
           + K     D  + N+L   YSK G +  S+   +F S+GE++++SW ++I+   + G+ +
Sbjct: 201 VIKYKLDYDPSIGNALCSLYSKLGSLDSSI--NVFQSIGEKNVISWTAVISACGENGKAA 258

Query: 201 EARRLFDEMPERD----AVSWNTILDGYAKAGEM---NLAFELFEKIPHR-NIVSWSTMV 252
              R F+EM   D      +  T+L        +    L   L  K+ ++ N+   ++++
Sbjct: 259 MGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLRITNSIM 318

Query: 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEK-GMAK----------EAARLYDQ 301
           + Y K G M+ A++LF +M +  LV W  +ISG+A+   +AK          EA  ++ +
Sbjct: 319 YLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEALSIFLE 378

Query: 302 MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361
           +   G KPD  TL S+L  C+    LG G ++HA   K  +  +  V  ALV+MY+KCGS
Sbjct: 379 LNRTGKKPDLFTLSSVLTVCSRLSALGQGEQLHAQTIKSGYLSDVVVGTALVNMYSKCGS 438

Query: 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421
           +  A   F  M+ + L+SW  M+ GLA HG  E+AL LF  M+  G  P++ TFVGVL A
Sbjct: 439 IGKASKAFVEMSTRTLISWTTMITGLAQHGHSEQALQLFEDMRLAGVRPNQITFVGVLAA 498

Query: 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI 481
           C H+G +D+ + YF  M+++Y I P ++HYGC+I +  +  RL EA  ++  M  EP+  
Sbjct: 499 CCHSGMVDEALGYFEMMQKEYRIKPVMDHYGCLIAMFVKLRRLDEAFDIINKMDFEPSEF 558

Query: 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541
           IW  L+  CR     EL     + L++LK  D   Y  L N++ +   W  V+ VR  MK
Sbjct: 559 IWSILIAGCRNLGKQELGFYAAEQLLKLKLKDTETYVTLLNMYISAKRWQDVSRVRKLMK 618

Query: 542 KTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLSAEI 600
           + +  K +  S + +  ++H F    +LHP + ++Y+++  L    K  G+ +    EI
Sbjct: 619 EEKLGKFNDWSWITIKEKIHSFKTTGRLHPHNAKMYELLEELLDKAKGSGYQSTQHMEI 677



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 205/424 (48%), Gaps = 28/424 (6%)

Query: 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177
           Y  LL+ C  KN     Q+IHA I K G   D+ V  SL++ Y+KCG +G   A+K+F S
Sbjct: 77  YLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAMGN--ARKIFDS 134

Query: 178 MGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYA----------KA 227
           +  R++V+W +++ G V+  + + A  +F +M E   +  N  L G A          K 
Sbjct: 135 LHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTL-GIALNACSAINSIKL 193

Query: 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA 287
           G+   AF +  K+ +   +  + +   YSK G ++ +  +F  +  K ++ WT +IS   
Sbjct: 194 GKQLHAFVIKYKLDYDPSIG-NALCSLYSKLGSLDSSINVFQSIGEKNVISWTAVISACG 252

Query: 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN 347
           E G A    R +++M    +KP++ TL ++L+ C  +  L LG  VH+   K  ++ N  
Sbjct: 253 ENGKAAMGLRFFNEMLLEDIKPNEFTLTTVLSLCCVTLALVLGRLVHSLSIKLGYQYNLR 312

Query: 348 VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAM-----------HGQGEKA 396
           + N+++ +Y KCG +D A  +F+ M   +LV+WNAM+ G A               G +A
Sbjct: 313 ITNSIMYLYLKCGHMDEAQILFHKMGSTNLVTWNAMISGHAQAMDLAKDDFSAQRSGIEA 372

Query: 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456
           L +F  +   G  PD +T   VL  C+    + +G Q  ++     G L  V     +++
Sbjct: 373 LSIFLELNRTGKKPDLFTLSSVLTVCSRLSALGQGEQ-LHAQTIKSGYLSDVVVGTALVN 431

Query: 457 LLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516
           +  + G + +A +    M      I W T++    +H   E A ++ + + RL G  P  
Sbjct: 432 MYSKCGSIGKASKAFVEMSTR-TLISWTTMITGLAQHGHSEQALQLFEDM-RLAGVRPNQ 489

Query: 517 YTML 520
            T +
Sbjct: 490 ITFV 493



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 105/222 (47%), Gaps = 11/222 (4%)

Query: 303 EEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362
           EE  ++P     + +L  C +   +     +HA I K     +  V  +LV++YAKCG++
Sbjct: 68  EEKKIEP--SYYLPLLQECTKKNSVSEAQVIHAHIIKTGTHKDLAVMTSLVNVYAKCGAM 125

Query: 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422
            NA  +F+ + ++++V+W A++ G   + Q   A+ +F  M + G  P  YT    L AC
Sbjct: 126 GNARKIFDSLHRRNVVAWTALMTGYVQNSQPNIAIDVFQDMLESGTLPSNYTLGIALNAC 185

Query: 423 THAGFIDKGVQ---YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN 479
           +    I  G Q   +    + DY   P + +  C   L  + G L  ++ + QS+  E N
Sbjct: 186 SAINSIKLGKQLHAFVIKYKLDYD--PSIGNALC--SLYSKLGSLDSSINVFQSIG-EKN 240

Query: 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
            I W  ++ AC ++    +     + ++ L+   P  +T+ +
Sbjct: 241 VISWTAVISACGENGKAAMGLRFFNEML-LEDIKPNEFTLTT 281


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 198/588 (33%), Positives = 317/588 (53%), Gaps = 31/588 (5%)

Query: 32  QTKQLFAQIIKLD--LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHL-YNTLIR 88
           Q KQL A I+K    L  D  +   L S+L L +    ++ +FN +  P   L ++++I+
Sbjct: 27  QAKQLHAHIVKTKGTLHSDNILVLSLYSNLNLLQH---SLHLFNSLPSPPPPLAWSSIIK 83

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
               +SL   +F  F  M+   V  +   +P LLKA        L   +HA   + G   
Sbjct: 84  CYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDS 143

Query: 149 DIFVPNSLIDSYSKC-------------GVVGVSLAKKLFMSMGERDIVSWNSMIAGLVK 195
           D+++ N+LI++Y+K              G  G+   KK+F  M  RD+VSWN++IAG  +
Sbjct: 144 DLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQ 203

Query: 196 GGELSEARRLFDEMPER-----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-----I 245
            G   EA  +  EM +      D+ + ++IL  +A+  ++N   E+      RN     +
Sbjct: 204 NGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEI-HGYAVRNGFDGDV 262

Query: 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305
              S+++  Y+K   +E +   F  +P K  + W  II+G  + G        + +M + 
Sbjct: 263 FIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKE 322

Query: 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365
            +KP   +  S++ ACA    L LG ++H  I +  F  N  + ++LVDMYAKCG++  A
Sbjct: 323 NVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMA 382

Query: 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425
             VF+ + K+D+V+W A++ G AMHG    A+ LF  M ++G  P    F+ VL AC+HA
Sbjct: 383 RYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHA 442

Query: 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-VEPNAIIWG 484
           G +D+G +YF SMERD+GI P +EHY  + DLLGR+GRL+EA   + +M  V+P   +W 
Sbjct: 443 GLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWS 502

Query: 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544
            LL ACR H +VELAE+VLD L+ +   + G Y ++SNI++A   W   A +R+ M+K  
Sbjct: 503 ILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKG 562

Query: 545 AQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592
            +K    S +EV N+VH F   D+ HP  ++I + ++ L + ++  G+
Sbjct: 563 LKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGY 610



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/325 (21%), Positives = 141/325 (43%), Gaps = 47/325 (14%)

Query: 29  NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIR 88
           ++N+ K++    ++     D +I   LI   A C ++  +++ F  +   D   +N++I 
Sbjct: 242 DVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIA 301

Query: 89  ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG 148
            CVQN    +    F  M ++ V     ++  ++ AC       L + +H  I + G+  
Sbjct: 302 GCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDD 361

Query: 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDE 208
           + F+ +SL+D Y+KCG   + +A+ +F  + +RD+V+W ++I G    G   +A  LF+ 
Sbjct: 362 NEFIASSLVDMYAKCG--NIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFEN 419

Query: 209 MPERDA----VSWNTILDGYAKAGEMNLAFELFEK----------IPHRNIVS------- 247
           M E       V++  +L   + AG ++  +  F            + H   V+       
Sbjct: 420 MLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAG 479

Query: 248 ---------------------WSTMVWGYSKDGDMEMAKLLFDRM---PAKTLVPWTIII 283
                                WS ++        +E+A+ + D++    ++ +  + ++ 
Sbjct: 480 RLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMS 539

Query: 284 SGYAEKGMAKEAARLYDQMEEAGLK 308
           + Y+     K+AARL   M + GLK
Sbjct: 540 NIYSAAQRWKDAARLRIHMRKKGLK 564


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 204/679 (30%), Positives = 327/679 (48%), Gaps = 116/679 (17%)

Query: 26  KCKNLNQTKQLFAQIIKLDLQRDPY-IAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYN 84
           K  N+ Q +Q    ++   L    Y ++  LI+   L         +F     PD  +Y+
Sbjct: 10  KISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSPDASVYS 69

Query: 85  TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKC 144
            +++   +   + Q   +F       +    F Y +L+K   GK+      + HA + K 
Sbjct: 70  CMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLA-GKSG----NLFHAYVLKL 124

Query: 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER----------------------- 181
           G+  D F+ N+++D Y+K G   V LA+ LF  M ER                       
Sbjct: 125 GHIDDHFIRNAILDMYAKNG--QVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVV 182

Query: 182 --------DIVSWNSMIAGLVKGGELS-------------------------------EA 202
                   +I++W SM+ G  K G+L                                EA
Sbjct: 183 LFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEA 242

Query: 203 RRLFDEMPER----DAVSW-----------------------------------NTILDG 223
             LF +M E     D  +W                                     +LD 
Sbjct: 243 LNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDM 302

Query: 224 YAKAGEMNLAFELFEKI-PHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTII 282
           +AK G + +A  +F+++   RN V+W+ M+  Y++ G + +A+ LFD MP + +V W  +
Sbjct: 303 HAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSM 362

Query: 283 ISGYAEKGMAKEAARLYDQMEEA-GLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341
           I+GYA+ G +  +  L+ +M     ++PD+ T+ S+L+AC   G L L   V   + +  
Sbjct: 363 IAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKN 422

Query: 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFS 401
            K   +  N+L+ MY+KCGS+ +A  +F  M  +D+VS+N ++ G A +G G++A+ L  
Sbjct: 423 IKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVL 482

Query: 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461
            M++EG  PD  T++GVL AC+HAG +++G   F S++      P V+HY CM+DLLGR+
Sbjct: 483 TMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQA-----PTVDHYACMVDLLGRA 537

Query: 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521
           G L EA  L+QSMP++P+A ++G+LL A R H  V L E     L  L+  + GNY +LS
Sbjct: 538 GELDEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLS 597

Query: 522 NIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMIN 581
           NI+A+ G W  V  VR  MKK   +K  G S VE   +VH+F+V D+ H +S+ IY+++ 
Sbjct: 598 NIYASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLA 657

Query: 582 TLGKDLKPVGHAAKLSAEI 600
            L + +K VG  A  S  +
Sbjct: 658 ELERKMKRVGFVADKSCAL 676



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 129/265 (48%), Gaps = 11/265 (4%)

Query: 16  LLEEKLQNLH-KCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFND 74
            ++  L ++H K  NL   + +F +   L  QR+      +IS+     ++ LA ++F++
Sbjct: 294 FVKTALLDMHAKFGNLEIARNIFDE---LGSQRNAVTWNIMISAYTRVGKLSLARELFDN 350

Query: 75  IQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQE-KGVFTDNFTYPFLLKACNGKNWFHL 133
           +   DV  +N++I    QN  +A +  +F +M     +  D  T   +L AC       L
Sbjct: 351 MPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKL 410

Query: 134 VQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193
              +  ++ +      I   NSLI  YSKCG   V+ A ++F +MG RD+VS+N++I+G 
Sbjct: 411 SYWVLDIVREKNIKLGISGFNSLIFMYSKCG--SVADAHRIFQTMGTRDVVSFNTLISGF 468

Query: 194 VKGGELSEARRLFDEMPER----DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWS 249
              G   EA +L   M E     D V++  +L   + AG +N    +F+ I    +  ++
Sbjct: 469 AANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQAPTVDHYA 528

Query: 250 TMVWGYSKDGDMEMAKLLFDRMPAK 274
            MV    + G+++ AK+L   MP K
Sbjct: 529 CMVDLLGRAGELDEAKMLIQSMPMK 553


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,575,876,078
Number of Sequences: 23463169
Number of extensions: 405287996
Number of successful extensions: 1116110
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8983
Number of HSP's successfully gapped in prelim test: 3309
Number of HSP's that attempted gapping in prelim test: 868082
Number of HSP's gapped (non-prelim): 65114
length of query: 605
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 456
effective length of database: 8,863,183,186
effective search space: 4041611532816
effective search space used: 4041611532816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)