Query 037404
Match_columns 605
No_of_seqs 619 out of 4074
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 11:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-84 4.3E-89 699.1 68.2 582 10-597 182-774 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1.4E-75 3E-80 615.7 60.5 519 77-597 84-611 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2E-71 4.4E-76 598.2 60.1 509 28-540 100-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-63 2.9E-68 526.1 54.4 497 45-550 366-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 8E-63 1.7E-67 520.2 53.3 487 19-510 375-910 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.4E-59 7.5E-64 491.5 47.7 427 15-446 124-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 8.6E-33 1.9E-37 306.2 56.2 515 19-545 334-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.9E-32 6.2E-37 302.0 56.9 514 19-544 300-833 (899)
9 PRK11447 cellulose synthase su 100.0 1.4E-24 3.1E-29 240.4 54.9 519 11-544 25-701 (1157)
10 PRK11447 cellulose synthase su 100.0 6.3E-24 1.4E-28 235.3 56.2 510 19-542 117-739 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 5.5E-21 1.2E-25 202.2 57.0 503 25-544 55-707 (987)
12 KOG4626 O-linked N-acetylgluco 99.9 9.5E-23 2.1E-27 191.3 34.3 438 83-532 51-508 (966)
13 PRK09782 bacteriophage N4 rece 99.9 1.5E-20 3.2E-25 199.0 51.9 508 19-546 113-743 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 7.7E-22 1.7E-26 185.3 29.0 418 120-548 53-490 (966)
15 TIGR00990 3a0801s09 mitochondr 99.9 1.4E-19 3.1E-24 188.6 40.9 413 121-543 133-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.9E-25 185.7 29.5 311 254-568 44-372 (389)
17 KOG2002 TPR-containing nuclear 99.9 9.3E-19 2E-23 173.5 39.9 513 28-546 178-748 (1018)
18 PRK15174 Vi polysaccharide exp 99.9 5.9E-18 1.3E-22 175.6 38.9 324 185-514 44-386 (656)
19 PRK15174 Vi polysaccharide exp 99.9 6.7E-18 1.5E-22 175.2 37.5 347 193-545 15-383 (656)
20 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-17 5.8E-22 171.5 42.1 418 83-514 130-576 (615)
21 KOG2002 TPR-containing nuclear 99.9 3.4E-17 7.4E-22 162.6 39.8 517 20-546 205-801 (1018)
22 PRK10049 pgaA outer membrane p 99.9 4.1E-17 8.8E-22 173.2 43.6 399 86-515 21-462 (765)
23 PRK10049 pgaA outer membrane p 99.8 1.9E-17 4.2E-22 175.7 40.2 390 118-544 18-457 (765)
24 PRK11788 tetratricopeptide rep 99.8 3.6E-18 7.7E-23 169.3 32.1 259 247-509 71-347 (389)
25 PRK14574 hmsH outer membrane p 99.8 9.5E-16 2.1E-20 159.5 43.6 440 55-517 40-521 (822)
26 KOG2003 TPR repeat-containing 99.8 8.9E-17 1.9E-21 146.1 30.3 437 86-529 207-709 (840)
27 PRK14574 hmsH outer membrane p 99.8 4.3E-15 9.3E-20 154.7 45.7 193 352-544 298-514 (822)
28 KOG0495 HAT repeat protein [RN 99.8 7.5E-14 1.6E-18 133.0 45.9 499 34-554 366-889 (913)
29 KOG2076 RNA polymerase III tra 99.8 7.6E-14 1.6E-18 138.3 45.1 521 18-544 143-850 (895)
30 KOG4422 Uncharacterized conser 99.7 8.6E-14 1.9E-18 126.1 34.1 307 24-359 125-481 (625)
31 KOG0495 HAT repeat protein [RN 99.7 2.7E-12 5.9E-17 122.7 43.6 482 25-523 387-894 (913)
32 KOG2003 TPR repeat-containing 99.7 2.6E-14 5.6E-19 130.3 27.3 421 117-543 200-689 (840)
33 KOG2076 RNA polymerase III tra 99.7 1.4E-12 3.1E-17 129.4 40.0 482 56-543 146-734 (895)
34 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.5E-21 149.8 10.8 257 282-542 14-276 (280)
35 KOG4422 Uncharacterized conser 99.7 8.2E-12 1.8E-16 113.5 38.6 424 79-545 115-592 (625)
36 KOG0547 Translocase of outer m 99.7 5.4E-13 1.2E-17 123.2 30.8 215 322-542 337-565 (606)
37 KOG1915 Cell cycle control pro 99.6 1.5E-11 3.3E-16 113.3 37.1 486 48-541 72-623 (677)
38 KOG1915 Cell cycle control pro 99.6 1.8E-11 4E-16 112.7 37.1 455 79-543 72-585 (677)
39 KOG1155 Anaphase-promoting com 99.6 3.8E-12 8.3E-17 116.9 32.5 326 212-542 162-494 (559)
40 KOG1155 Anaphase-promoting com 99.6 1.3E-11 2.8E-16 113.5 33.6 375 181-588 162-555 (559)
41 PRK10747 putative protoheme IX 99.6 3.9E-12 8.5E-17 124.7 32.6 246 287-542 129-389 (398)
42 COG2956 Predicted N-acetylgluc 99.6 2.3E-12 5E-17 112.9 26.9 264 282-576 113-380 (389)
43 PRK10747 putative protoheme IX 99.6 1.6E-12 3.4E-17 127.5 29.2 278 226-510 96-391 (398)
44 KOG1173 Anaphase-promoting com 99.6 1.9E-11 4.1E-16 115.4 33.9 259 281-544 249-519 (611)
45 KOG1126 DNA-binding cell divis 99.6 3.3E-13 7E-18 129.8 21.9 277 259-544 333-621 (638)
46 KOG1126 DNA-binding cell divis 99.6 3.7E-13 8E-18 129.4 20.4 250 289-544 332-587 (638)
47 KOG4318 Bicoid mRNA stability 99.6 3.3E-11 7.2E-16 119.3 34.2 472 36-547 12-598 (1088)
48 TIGR00540 hemY_coli hemY prote 99.6 7.5E-12 1.6E-16 123.5 30.4 279 258-542 97-398 (409)
49 TIGR00540 hemY_coli hemY prote 99.5 2.6E-11 5.5E-16 119.7 32.4 279 226-509 96-399 (409)
50 PF13429 TPR_15: Tetratricopep 99.5 3.3E-14 7.1E-19 133.2 10.5 251 250-508 13-276 (280)
51 KOG0547 Translocase of outer m 99.5 1.4E-10 2.9E-15 107.6 32.6 218 286-510 336-567 (606)
52 KOG2047 mRNA splicing factor [ 99.5 4E-09 8.8E-14 101.3 42.7 508 20-536 108-716 (835)
53 COG3071 HemY Uncharacterized e 99.5 4.9E-10 1.1E-14 101.8 31.2 250 253-509 126-390 (400)
54 COG3071 HemY Uncharacterized e 99.4 3.5E-10 7.6E-15 102.7 28.8 279 257-543 96-390 (400)
55 TIGR02521 type_IV_pilW type IV 99.4 3.3E-11 7.2E-16 110.2 23.3 198 345-543 30-232 (234)
56 COG2956 Predicted N-acetylgluc 99.4 1.6E-10 3.4E-15 101.6 25.2 279 196-508 48-346 (389)
57 KOG4318 Bicoid mRNA stability 99.4 1.3E-10 2.8E-15 115.3 27.3 438 77-542 22-556 (1088)
58 KOG1173 Anaphase-promoting com 99.4 2.2E-09 4.9E-14 101.7 31.8 280 243-526 242-535 (611)
59 KOG2047 mRNA splicing factor [ 99.4 8.5E-09 1.8E-13 99.1 35.7 519 47-580 100-717 (835)
60 KOG4162 Predicted calmodulin-b 99.4 5.5E-09 1.2E-13 102.7 34.4 389 145-545 318-785 (799)
61 KOG1174 Anaphase-promoting com 99.3 2.7E-08 5.8E-13 90.8 33.4 281 274-588 230-519 (564)
62 KOG2376 Signal recognition par 99.3 4.1E-08 8.9E-13 93.8 35.7 437 88-540 20-517 (652)
63 KOG1129 TPR repeat-containing 99.3 1.1E-10 2.5E-15 102.5 16.8 226 315-545 227-460 (478)
64 KOG1840 Kinesin light chain [C 99.3 4.9E-10 1.1E-14 109.3 23.0 230 313-542 201-478 (508)
65 PRK12370 invasion protein regu 99.3 1.1E-09 2.4E-14 112.4 26.4 242 290-544 275-536 (553)
66 KOG1174 Anaphase-promoting com 99.3 1.8E-08 3.9E-13 91.8 30.4 273 242-520 229-511 (564)
67 KOG3785 Uncharacterized conser 99.3 5.4E-08 1.2E-12 87.0 31.9 437 56-512 29-493 (557)
68 PF13041 PPR_2: PPR repeat fam 99.3 5.4E-12 1.2E-16 82.3 5.2 50 78-127 1-50 (50)
69 KOG1129 TPR repeat-containing 99.3 1.6E-10 3.4E-15 101.6 15.4 236 280-520 227-469 (478)
70 COG3063 PilF Tfp pilus assembl 99.3 6.8E-10 1.5E-14 93.2 18.0 163 379-545 37-204 (250)
71 TIGR02521 type_IV_pilW type IV 99.3 2.6E-09 5.7E-14 97.6 24.0 162 347-510 66-233 (234)
72 KOG3785 Uncharacterized conser 99.2 8.1E-08 1.8E-12 85.9 30.5 444 87-548 29-495 (557)
73 PRK12370 invasion protein regu 99.2 1.6E-09 3.4E-14 111.3 23.3 212 325-543 275-502 (553)
74 PRK11189 lipoprotein NlpI; Pro 99.2 2E-09 4.3E-14 101.1 20.7 189 347-544 65-266 (296)
75 KOG3616 Selective LIM binding 99.2 4.6E-07 1E-11 88.8 36.2 353 154-545 619-1026(1636)
76 KOG1156 N-terminal acetyltrans 99.2 1.8E-07 3.8E-12 90.6 32.6 373 167-545 56-470 (700)
77 PF13041 PPR_2: PPR repeat fam 99.2 7.4E-11 1.6E-15 76.9 6.9 50 375-424 1-50 (50)
78 KOG0624 dsRNA-activated protei 99.2 5.1E-08 1.1E-12 86.8 25.5 207 186-412 41-256 (504)
79 PF12569 NARP1: NMDA receptor- 99.2 4.3E-07 9.2E-12 90.3 34.8 47 493-539 470-516 (517)
80 KOG2376 Signal recognition par 99.2 6.2E-07 1.3E-11 86.0 33.4 412 122-544 19-488 (652)
81 PRK11189 lipoprotein NlpI; Pro 99.2 3.4E-08 7.4E-13 92.7 25.4 229 290-526 40-283 (296)
82 KOG1156 N-terminal acetyltrans 99.1 2.4E-06 5.2E-11 83.0 37.0 210 28-242 21-247 (700)
83 KOG1840 Kinesin light chain [C 99.1 1.4E-08 3.1E-13 99.2 22.1 162 348-509 285-479 (508)
84 COG3063 PilF Tfp pilus assembl 99.1 4.2E-08 9.2E-13 82.7 21.5 193 320-515 44-242 (250)
85 PF04733 Coatomer_E: Coatomer 99.1 1.3E-08 2.7E-13 94.0 18.2 156 352-514 108-270 (290)
86 KOG4340 Uncharacterized conser 99.1 4.8E-07 1E-11 79.2 26.2 416 109-545 4-445 (459)
87 KOG4162 Predicted calmodulin-b 99.1 1.6E-06 3.5E-11 85.9 32.7 415 92-515 296-789 (799)
88 KOG0548 Molecular co-chaperone 99.0 1.8E-07 3.9E-12 88.7 24.4 366 158-543 10-455 (539)
89 PF12569 NARP1: NMDA receptor- 99.0 4.2E-07 9.1E-12 90.3 28.4 295 222-541 12-332 (517)
90 KOG1125 TPR repeat-containing 99.0 1E-08 2.2E-13 97.7 15.9 219 322-543 296-527 (579)
91 PF04733 Coatomer_E: Coatomer 99.0 6.6E-09 1.4E-13 95.9 13.7 244 285-543 10-265 (290)
92 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.6E-11 85.7 30.3 295 247-544 8-337 (355)
93 KOG3617 WD40 and TPR repeat-co 99.0 5.3E-05 1.1E-09 75.9 40.8 216 28-271 742-993 (1416)
94 KOG3617 WD40 and TPR repeat-co 99.0 3E-06 6.5E-11 84.3 31.4 363 47-438 724-1171(1416)
95 KOG1127 TPR repeat-containing 99.0 1.4E-06 2.9E-11 88.6 29.2 502 34-543 476-1104(1238)
96 KOG3616 Selective LIM binding 99.0 6.1E-06 1.3E-10 81.2 31.8 370 121-540 563-963 (1636)
97 KOG0548 Molecular co-chaperone 98.9 3.4E-06 7.4E-11 80.3 29.3 250 279-539 227-485 (539)
98 KOG0624 dsRNA-activated protei 98.9 1E-06 2.2E-11 78.7 24.1 325 151-515 39-376 (504)
99 KOG0985 Vesicle coat protein c 98.9 0.0001 2.3E-09 75.5 43.9 144 376-540 1103-1246(1666)
100 KOG0985 Vesicle coat protein c 98.9 4.2E-05 9.2E-10 78.2 36.3 276 228-534 1089-1374(1666)
101 PRK10370 formate-dependent nit 98.9 2.2E-07 4.7E-12 81.0 18.1 148 384-545 23-175 (198)
102 TIGR03302 OM_YfiO outer membra 98.9 2.3E-07 4.9E-12 84.7 18.3 182 345-543 32-232 (235)
103 KOG1127 TPR repeat-containing 98.9 1.9E-06 4E-11 87.7 25.2 446 82-542 494-995 (1238)
104 PRK04841 transcriptional regul 98.8 1.2E-05 2.5E-10 89.4 34.3 355 190-544 348-761 (903)
105 PRK04841 transcriptional regul 98.8 0.00019 4.2E-09 79.8 43.6 397 98-512 293-763 (903)
106 KOG4340 Uncharacterized conser 98.8 1.7E-06 3.6E-11 75.9 20.6 305 217-538 13-334 (459)
107 PRK15359 type III secretion sy 98.8 1.9E-07 4.2E-12 76.9 13.8 94 451-544 27-122 (144)
108 KOG1070 rRNA processing protei 98.8 9.4E-07 2E-11 92.8 20.7 199 345-547 1457-1667(1710)
109 cd05804 StaR_like StaR_like; a 98.8 1.7E-05 3.7E-10 77.6 28.6 192 316-509 119-336 (355)
110 KOG1125 TPR repeat-containing 98.7 8.3E-07 1.8E-11 85.1 18.0 244 288-535 297-563 (579)
111 PRK15359 type III secretion sy 98.7 3.9E-07 8.4E-12 75.1 13.9 123 398-526 14-138 (144)
112 COG5010 TadD Flp pilus assembl 98.7 1.3E-06 2.7E-11 75.7 16.9 126 416-543 70-197 (257)
113 KOG1128 Uncharacterized conser 98.7 1.2E-06 2.7E-11 86.2 17.3 213 315-545 402-618 (777)
114 PRK15363 pathogenicity island 98.7 9E-07 2E-11 71.3 13.5 97 447-543 34-132 (157)
115 PRK15179 Vi polysaccharide bio 98.7 3E-06 6.4E-11 87.8 20.5 133 376-512 85-220 (694)
116 PLN02789 farnesyltranstransfer 98.6 1.8E-05 3.9E-10 74.3 23.3 177 362-541 88-300 (320)
117 COG5010 TadD Flp pilus assembl 98.6 9.5E-06 2.1E-10 70.4 17.9 160 376-539 66-227 (257)
118 COG4783 Putative Zn-dependent 98.6 2.2E-05 4.8E-10 74.3 21.6 118 422-541 316-435 (484)
119 TIGR02552 LcrH_SycD type III s 98.6 1.2E-06 2.6E-11 72.0 12.2 98 447-544 16-115 (135)
120 KOG1128 Uncharacterized conser 98.6 3.7E-05 8.1E-10 76.1 23.6 188 342-544 394-583 (777)
121 KOG3081 Vesicle coat complex C 98.6 0.00012 2.5E-09 63.8 23.7 156 352-514 114-276 (299)
122 PRK10370 formate-dependent nit 98.5 1.4E-05 3.1E-10 69.7 18.8 155 353-518 23-182 (198)
123 PRK14720 transcript cleavage f 98.5 1.9E-05 4.2E-10 82.6 22.4 56 313-370 118-173 (906)
124 PF12854 PPR_1: PPR repeat 98.5 9.2E-08 2E-12 55.7 3.0 33 44-76 2-34 (34)
125 PLN02789 farnesyltranstransfer 98.5 2.6E-05 5.7E-10 73.2 20.8 189 353-544 44-251 (320)
126 TIGR03302 OM_YfiO outer membra 98.5 9.6E-06 2.1E-10 73.9 17.8 182 309-511 31-234 (235)
127 KOG3060 Uncharacterized conser 98.5 1.9E-05 4E-10 68.0 17.6 186 325-513 26-224 (289)
128 KOG3081 Vesicle coat complex C 98.5 2.9E-05 6.4E-10 67.4 18.9 149 384-542 115-270 (299)
129 KOG3060 Uncharacterized conser 98.5 5.3E-05 1.2E-09 65.3 19.8 163 379-545 54-222 (289)
130 COG4783 Putative Zn-dependent 98.4 9E-05 2E-09 70.3 22.1 147 377-545 306-456 (484)
131 KOG1070 rRNA processing protei 98.4 5.2E-05 1.1E-09 80.3 22.3 220 214-434 1458-1693(1710)
132 PF12854 PPR_1: PPR repeat 98.4 4.4E-07 9.5E-12 52.8 4.2 32 443-474 2-33 (34)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 7.3E-06 1.6E-10 78.4 14.2 122 415-541 172-295 (395)
134 PRK15179 Vi polysaccharide bio 98.4 0.00011 2.4E-09 76.3 23.0 141 342-486 82-228 (694)
135 TIGR02552 LcrH_SycD type III s 98.3 1.8E-05 4E-10 64.9 13.9 114 399-516 5-121 (135)
136 KOG0550 Molecular chaperone (D 98.3 5.9E-05 1.3E-09 69.7 17.0 165 378-546 169-353 (486)
137 PF09976 TPR_21: Tetratricopep 98.3 3.3E-05 7.1E-10 64.0 13.6 115 425-540 24-144 (145)
138 KOG0553 TPR repeat-containing 98.3 8.9E-06 1.9E-10 72.0 10.4 87 456-542 89-177 (304)
139 PF12895 Apc3: Anaphase-promot 98.3 1.5E-06 3.3E-11 64.1 4.9 79 461-540 2-84 (84)
140 PF13414 TPR_11: TPR repeat; P 98.2 3.4E-06 7.4E-11 59.6 6.3 65 479-543 2-67 (69)
141 TIGR02795 tol_pal_ybgF tol-pal 98.2 2.3E-05 4.9E-10 62.7 11.4 95 450-544 4-106 (119)
142 PRK14720 transcript cleavage f 98.2 0.0016 3.4E-08 68.8 27.0 232 245-525 31-268 (906)
143 TIGR00756 PPR pentatricopeptid 98.2 3.5E-06 7.5E-11 50.1 4.4 35 81-115 1-35 (35)
144 cd00189 TPR Tetratricopeptide 98.2 2.3E-05 4.9E-10 59.6 10.3 94 451-544 3-98 (100)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 8.3E-05 1.8E-09 71.3 15.7 127 347-476 170-296 (395)
146 KOG1914 mRNA cleavage and poly 98.2 0.0087 1.9E-07 57.9 32.3 402 46-474 17-498 (656)
147 PF13432 TPR_16: Tetratricopep 98.1 4.4E-06 9.5E-11 58.1 5.0 59 486-544 3-61 (65)
148 PLN03088 SGT1, suppressor of 98.1 6.1E-05 1.3E-09 72.6 14.0 85 458-542 12-98 (356)
149 PF13812 PPR_3: Pentatricopept 98.1 5.1E-06 1.1E-10 48.9 4.1 33 81-113 2-34 (34)
150 PF09976 TPR_21: Tetratricopep 98.1 0.00028 6.1E-09 58.4 15.7 124 380-506 15-144 (145)
151 TIGR02795 tol_pal_ybgF tol-pal 98.0 8.7E-05 1.9E-09 59.2 11.4 106 414-519 4-115 (119)
152 TIGR00756 PPR pentatricopeptid 98.0 1.1E-05 2.4E-10 47.8 4.6 34 378-411 1-34 (35)
153 COG4235 Cytochrome c biogenesi 98.0 0.00041 9E-09 62.2 16.0 105 443-547 151-260 (287)
154 PRK02603 photosystem I assembl 98.0 8.1E-05 1.7E-09 63.8 11.3 96 448-543 35-149 (172)
155 KOG0553 TPR repeat-containing 98.0 5.9E-05 1.3E-09 67.0 10.3 100 423-524 92-193 (304)
156 CHL00033 ycf3 photosystem I as 97.9 0.00011 2.4E-09 62.8 10.9 95 447-541 34-140 (168)
157 PF13812 PPR_3: Pentatricopept 97.9 2.1E-05 4.5E-10 46.2 4.5 33 378-410 2-34 (34)
158 PRK15331 chaperone protein Sic 97.9 0.00093 2E-08 54.5 15.1 92 451-542 40-133 (165)
159 PF13371 TPR_9: Tetratricopept 97.9 4.9E-05 1.1E-09 54.3 6.8 59 487-545 2-60 (73)
160 PF14559 TPR_19: Tetratricopep 97.9 2E-05 4.3E-10 55.4 4.7 54 491-544 2-55 (68)
161 PLN03088 SGT1, suppressor of 97.9 0.00025 5.4E-09 68.4 13.7 106 420-527 10-117 (356)
162 PRK10153 DNA-binding transcrip 97.9 0.00089 1.9E-08 67.5 17.2 63 481-544 421-483 (517)
163 PF04840 Vps16_C: Vps16, C-ter 97.9 0.018 3.8E-07 54.2 24.6 79 353-437 184-262 (319)
164 KOG1914 mRNA cleavage and poly 97.8 0.035 7.6E-07 53.9 35.4 154 378-534 367-530 (656)
165 KOG2053 Mitochondrial inherita 97.8 0.054 1.2E-06 56.0 37.6 490 28-541 23-606 (932)
166 PF12895 Apc3: Anaphase-promot 97.8 9.3E-05 2E-09 54.5 7.0 80 426-505 3-83 (84)
167 COG4700 Uncharacterized protei 97.8 0.0045 9.8E-08 51.0 16.6 133 408-542 85-221 (251)
168 PF14938 SNAP: Soluble NSF att 97.8 0.0013 2.8E-08 61.4 15.9 109 353-474 101-222 (282)
169 PF13432 TPR_16: Tetratricopep 97.8 8.8E-05 1.9E-09 51.5 6.2 61 454-514 3-65 (65)
170 cd00189 TPR Tetratricopeptide 97.8 0.00034 7.3E-09 52.9 10.2 92 418-511 6-99 (100)
171 PRK02603 photosystem I assembl 97.8 0.0013 2.9E-08 56.3 14.5 129 378-529 36-166 (172)
172 PF01535 PPR: PPR repeat; Int 97.8 3.8E-05 8.1E-10 43.9 3.4 31 81-111 1-31 (31)
173 PF07079 DUF1347: Protein of u 97.7 0.042 9.1E-07 52.2 33.3 337 187-541 132-522 (549)
174 PF05843 Suf: Suppressor of fo 97.7 0.00098 2.1E-08 61.9 14.4 135 378-515 2-142 (280)
175 PF14938 SNAP: Soluble NSF att 97.7 0.015 3.2E-07 54.4 22.2 102 379-481 157-269 (282)
176 PRK10153 DNA-binding transcrip 97.7 0.002 4.2E-08 65.1 16.7 142 372-515 332-488 (517)
177 KOG1130 Predicted G-alpha GTPa 97.7 0.00055 1.2E-08 63.4 11.2 130 413-542 196-343 (639)
178 PF12688 TPR_5: Tetratrico pep 97.6 0.0014 3E-08 51.3 11.4 88 454-541 7-102 (120)
179 PF01535 PPR: PPR repeat; Int 97.6 9.4E-05 2E-09 42.2 3.5 31 378-408 1-31 (31)
180 KOG2280 Vacuolar assembly/sort 97.6 0.097 2.1E-06 53.1 25.7 323 186-540 440-796 (829)
181 PF14559 TPR_19: Tetratricopep 97.6 0.00011 2.4E-09 51.6 4.3 61 460-520 3-65 (68)
182 PRK10866 outer membrane biogen 97.5 0.018 3.9E-07 52.1 19.3 174 351-541 37-239 (243)
183 PRK10803 tol-pal system protei 97.5 0.0008 1.7E-08 61.3 10.4 94 450-543 145-246 (263)
184 COG3898 Uncharacterized membra 97.5 0.084 1.8E-06 49.2 26.2 275 258-545 97-394 (531)
185 PF10037 MRP-S27: Mitochondria 97.5 0.00088 1.9E-08 64.7 10.7 120 44-163 61-186 (429)
186 PF05843 Suf: Suppressor of fo 97.5 0.00096 2.1E-08 62.0 10.7 129 413-543 2-136 (280)
187 CHL00033 ycf3 photosystem I as 97.5 0.0028 6E-08 54.1 12.7 113 415-530 38-167 (168)
188 PRK10866 outer membrane biogen 97.5 0.013 2.9E-07 53.0 17.5 54 419-472 182-236 (243)
189 PF13414 TPR_11: TPR repeat; P 97.5 0.00038 8.3E-09 48.9 6.1 65 447-511 2-69 (69)
190 PF13431 TPR_17: Tetratricopep 97.5 9E-05 1.9E-09 43.0 2.3 34 502-535 1-34 (34)
191 PRK15363 pathogenicity island 97.5 0.0073 1.6E-07 49.2 13.7 87 383-473 41-128 (157)
192 KOG2041 WD40 repeat protein [G 97.4 0.16 3.5E-06 51.1 26.3 203 147-375 689-907 (1189)
193 COG4700 Uncharacterized protei 97.4 0.0051 1.1E-07 50.7 12.7 108 437-544 78-190 (251)
194 PF13424 TPR_12: Tetratricopep 97.4 0.00039 8.5E-09 50.3 5.3 62 481-542 6-74 (78)
195 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00098 2.1E-08 63.7 9.0 66 478-543 73-141 (453)
196 KOG2041 WD40 repeat protein [G 97.4 0.21 4.5E-06 50.3 26.4 133 64-209 678-822 (1189)
197 PF08579 RPM2: Mitochondrial r 97.4 0.0035 7.7E-08 47.1 9.9 86 316-424 30-116 (120)
198 KOG2280 Vacuolar assembly/sort 97.3 0.24 5.2E-06 50.4 26.3 100 109-209 426-533 (829)
199 PF13281 DUF4071: Domain of un 97.3 0.04 8.6E-07 52.4 19.0 162 350-514 145-339 (374)
200 PF13428 TPR_14: Tetratricopep 97.3 0.00046 9.9E-09 43.2 4.3 42 481-522 2-43 (44)
201 KOG0543 FKBP-type peptidyl-pro 97.3 0.0019 4.2E-08 60.3 10.0 63 481-543 258-320 (397)
202 PF08579 RPM2: Mitochondrial r 97.3 0.0036 7.7E-08 47.1 9.5 81 379-460 27-116 (120)
203 KOG0550 Molecular chaperone (D 97.3 0.15 3.2E-06 48.1 21.8 85 322-406 260-350 (486)
204 PF10037 MRP-S27: Mitochondria 97.3 0.0033 7.2E-08 60.8 11.5 120 341-461 61-186 (429)
205 COG3898 Uncharacterized membra 97.2 0.2 4.2E-06 46.9 23.8 77 93-177 133-213 (531)
206 PF13525 YfiO: Outer membrane 97.2 0.026 5.6E-07 49.8 15.6 164 353-535 12-199 (203)
207 PF07079 DUF1347: Protein of u 97.2 0.24 5.3E-06 47.3 33.1 443 22-484 14-529 (549)
208 PF12688 TPR_5: Tetratrico pep 97.2 0.013 2.8E-07 46.0 11.8 91 383-473 7-100 (120)
209 PRK10803 tol-pal system protei 97.1 0.011 2.4E-07 53.9 13.2 102 414-515 145-252 (263)
210 PF04840 Vps16_C: Vps16, C-ter 97.1 0.24 5.1E-06 46.8 27.7 84 216-301 179-262 (319)
211 KOG2796 Uncharacterized conser 97.1 0.035 7.7E-07 48.7 14.9 131 416-547 181-319 (366)
212 PF13371 TPR_9: Tetratricopept 97.1 0.0023 5E-08 45.5 6.7 66 455-520 2-69 (73)
213 KOG0543 FKBP-type peptidyl-pro 97.1 0.0088 1.9E-07 56.0 11.9 139 384-544 215-356 (397)
214 PF13525 YfiO: Outer membrane 97.0 0.09 2E-06 46.3 17.3 143 381-543 9-170 (203)
215 KOG2053 Mitochondrial inherita 97.0 0.63 1.4E-05 48.6 41.2 116 415-533 439-560 (932)
216 KOG2796 Uncharacterized conser 96.9 0.052 1.1E-06 47.7 14.4 133 280-414 181-321 (366)
217 KOG1258 mRNA processing protei 96.9 0.51 1.1E-05 47.0 27.1 410 78-528 43-489 (577)
218 COG1729 Uncharacterized protei 96.9 0.0082 1.8E-07 53.4 9.5 91 450-543 144-244 (262)
219 KOG1538 Uncharacterized conser 96.8 0.19 4.2E-06 50.0 19.0 194 293-508 617-845 (1081)
220 PF13424 TPR_12: Tetratricopep 96.8 0.0027 5.8E-08 45.9 5.1 61 449-509 6-75 (78)
221 COG4235 Cytochrome c biogenesi 96.8 0.093 2E-06 47.5 15.6 105 409-515 153-262 (287)
222 KOG1130 Predicted G-alpha GTPa 96.8 0.037 8E-07 51.8 12.9 132 378-509 196-344 (639)
223 KOG1538 Uncharacterized conser 96.7 0.4 8.8E-06 47.9 20.1 105 358-474 728-843 (1081)
224 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.62 1.3E-05 44.6 29.7 135 376-513 396-535 (660)
225 PF06239 ECSIT: Evolutionarily 96.6 0.019 4.2E-07 49.2 9.4 88 274-361 45-153 (228)
226 PF06239 ECSIT: Evolutionarily 96.6 0.03 6.5E-07 48.0 10.4 88 374-462 44-152 (228)
227 PF13512 TPR_18: Tetratricopep 96.6 0.071 1.5E-06 42.7 11.8 90 454-543 16-128 (142)
228 PF03704 BTAD: Bacterial trans 96.6 0.013 2.8E-07 48.6 8.2 61 482-542 64-124 (146)
229 COG3118 Thioredoxin domain-con 96.6 0.12 2.6E-06 46.6 14.3 120 421-543 143-265 (304)
230 KOG4555 TPR repeat-containing 96.5 0.041 8.9E-07 42.6 9.5 91 455-545 50-146 (175)
231 PF09205 DUF1955: Domain of un 96.5 0.26 5.6E-06 38.5 13.5 140 387-545 12-151 (161)
232 COG0457 NrfG FOG: TPR repeat [ 96.4 0.69 1.5E-05 41.7 27.2 197 346-544 59-266 (291)
233 PRK11906 transcriptional regul 96.4 0.085 1.8E-06 51.0 13.0 63 480-542 338-400 (458)
234 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.027 5.8E-07 54.3 9.4 97 446-545 73-176 (453)
235 PF10300 DUF3808: Protein of u 96.2 0.27 6E-06 49.5 16.8 161 380-543 191-376 (468)
236 COG4785 NlpI Lipoprotein NlpI, 96.2 0.1 2.2E-06 44.5 11.3 154 387-545 75-268 (297)
237 KOG1941 Acetylcholine receptor 96.2 0.069 1.5E-06 49.2 11.0 164 379-542 85-274 (518)
238 COG1729 Uncharacterized protei 96.1 0.074 1.6E-06 47.5 10.3 100 414-516 144-251 (262)
239 COG3118 Thioredoxin domain-con 96.0 0.73 1.6E-05 41.8 16.2 173 364-538 121-296 (304)
240 PRK15331 chaperone protein Sic 96.0 0.16 3.5E-06 41.7 11.2 85 387-474 47-131 (165)
241 PRK11619 lytic murein transgly 96.0 2.6 5.6E-05 44.4 32.5 50 491-540 323-372 (644)
242 KOG0890 Protein kinase of the 95.9 5.1 0.00011 47.2 30.4 310 220-545 1389-1733(2382)
243 COG0457 NrfG FOG: TPR repeat [ 95.9 1.2 2.7E-05 40.0 26.0 197 312-512 60-268 (291)
244 PF13512 TPR_18: Tetratricopep 95.8 0.32 6.8E-06 39.1 11.9 116 384-515 17-134 (142)
245 PF07719 TPR_2: Tetratricopept 95.8 0.035 7.5E-07 32.1 5.0 32 482-513 3-34 (34)
246 KOG1585 Protein required for f 95.8 0.88 1.9E-05 39.9 15.0 142 379-537 93-250 (308)
247 PRK11906 transcriptional regul 95.8 0.58 1.3E-05 45.5 15.6 143 393-538 274-431 (458)
248 PF03704 BTAD: Bacterial trans 95.8 0.13 2.7E-06 42.6 10.2 71 380-451 65-139 (146)
249 COG4105 ComL DNA uptake lipopr 95.7 1.4 3E-05 39.3 19.2 168 355-542 43-232 (254)
250 PF00515 TPR_1: Tetratricopept 95.7 0.027 5.9E-07 32.6 4.4 32 481-512 2-33 (34)
251 PF13281 DUF4071: Domain of un 95.7 1 2.2E-05 43.1 16.8 72 250-321 146-227 (374)
252 KOG4234 TPR repeat-containing 95.6 0.056 1.2E-06 45.4 7.2 91 455-545 102-199 (271)
253 PF12921 ATP13: Mitochondrial 95.5 0.23 5.1E-06 39.4 10.1 49 408-456 48-96 (126)
254 KOG2114 Vacuolar assembly/sort 95.4 2.5 5.4E-05 44.1 19.1 176 248-438 337-516 (933)
255 KOG2610 Uncharacterized conser 95.3 0.19 4.1E-06 46.0 10.0 160 388-550 114-283 (491)
256 KOG2114 Vacuolar assembly/sort 95.3 4.5 9.7E-05 42.4 29.2 180 19-207 288-487 (933)
257 PF04053 Coatomer_WDAD: Coatom 95.3 0.75 1.6E-05 45.7 15.1 161 283-475 268-429 (443)
258 PF04184 ST7: ST7 protein; In 95.2 1.7 3.6E-05 42.7 16.5 100 415-514 262-380 (539)
259 PF12921 ATP13: Mitochondrial 95.2 0.25 5.4E-06 39.2 9.5 44 444-487 48-95 (126)
260 PF04184 ST7: ST7 protein; In 95.2 1.1 2.3E-05 43.9 15.0 61 482-542 261-323 (539)
261 KOG2066 Vacuolar assembly/sort 94.9 5.6 0.00012 41.4 25.3 73 152-226 394-467 (846)
262 KOG1920 IkappaB kinase complex 94.9 7.4 0.00016 42.6 24.9 159 197-374 894-1054(1265)
263 COG5107 RNA14 Pre-mRNA 3'-end 94.8 4.1 8.8E-05 39.4 28.8 128 413-542 398-530 (660)
264 PF08631 SPO22: Meiosis protei 94.8 3.4 7.5E-05 38.5 22.7 20 488-507 254-273 (278)
265 smart00299 CLH Clathrin heavy 94.7 2 4.3E-05 35.1 14.4 123 121-256 13-136 (140)
266 KOG1941 Acetylcholine receptor 94.7 1.2 2.6E-05 41.5 13.3 127 383-509 128-275 (518)
267 KOG2610 Uncharacterized conser 94.6 0.92 2E-05 41.7 12.2 156 357-515 114-284 (491)
268 PF13428 TPR_14: Tetratricopep 94.5 0.076 1.7E-06 33.0 4.1 32 514-545 1-32 (44)
269 PF13176 TPR_7: Tetratricopept 94.5 0.077 1.7E-06 31.2 3.8 27 516-542 1-27 (36)
270 PF04053 Coatomer_WDAD: Coatom 94.5 2.8 6.1E-05 41.8 16.7 130 184-334 296-425 (443)
271 KOG4648 Uncharacterized conser 94.4 0.098 2.1E-06 47.8 5.9 113 419-537 104-218 (536)
272 PF02259 FAT: FAT domain; Int 94.4 5.4 0.00012 38.7 21.2 149 376-527 145-305 (352)
273 KOG3364 Membrane protein invol 94.3 0.58 1.3E-05 36.8 9.0 91 477-593 29-124 (149)
274 PF02259 FAT: FAT domain; Int 94.3 2.8 6.2E-05 40.7 16.6 68 478-545 144-215 (352)
275 PRK10941 hypothetical protein; 94.2 0.54 1.2E-05 43.0 10.3 82 482-586 183-264 (269)
276 KOG4555 TPR repeat-containing 94.2 0.45 9.9E-06 37.0 8.1 88 421-510 52-145 (175)
277 PF14853 Fis1_TPR_C: Fis1 C-te 94.1 0.31 6.8E-06 31.5 6.2 51 516-592 3-53 (53)
278 PF13176 TPR_7: Tetratricopept 94.1 0.14 3E-06 30.1 4.3 28 482-509 1-28 (36)
279 KOG1920 IkappaB kinase complex 94.1 11 0.00024 41.3 25.0 82 419-507 972-1053(1265)
280 PF13181 TPR_8: Tetratricopept 94.0 0.16 3.5E-06 29.2 4.5 31 482-512 3-33 (34)
281 KOG3941 Intermediate in Toll s 94.0 0.49 1.1E-05 42.3 9.1 90 273-362 64-174 (406)
282 COG2976 Uncharacterized protei 94.0 2 4.3E-05 36.5 12.1 90 454-544 95-189 (207)
283 KOG3941 Intermediate in Toll s 93.9 0.75 1.6E-05 41.2 10.0 108 366-474 54-185 (406)
284 PF07719 TPR_2: Tetratricopept 93.3 0.13 2.7E-06 29.6 3.2 30 515-544 2-31 (34)
285 PRK09687 putative lyase; Provi 93.3 6.9 0.00015 36.4 25.2 134 376-523 141-276 (280)
286 PF09205 DUF1955: Domain of un 93.2 3.4 7.4E-05 32.6 11.4 61 379-440 88-148 (161)
287 PF10602 RPN7: 26S proteasome 93.0 3 6.4E-05 35.7 12.3 96 379-474 38-139 (177)
288 TIGR02561 HrpB1_HrpK type III 93.0 0.8 1.7E-05 36.9 8.0 52 493-544 23-74 (153)
289 PF09613 HrpB1_HrpK: Bacterial 92.9 0.9 1.9E-05 37.3 8.4 71 459-529 21-93 (160)
290 PF00515 TPR_1: Tetratricopept 92.8 0.16 3.4E-06 29.3 3.1 30 515-544 2-31 (34)
291 PF07035 Mic1: Colon cancer-as 92.8 3.3 7.1E-05 34.6 11.7 123 101-231 15-137 (167)
292 PF10300 DUF3808: Protein of u 92.7 8.3 0.00018 39.1 17.0 79 326-406 248-334 (468)
293 KOG1585 Protein required for f 92.3 7.7 0.00017 34.4 17.7 200 282-504 37-251 (308)
294 COG2976 Uncharacterized protei 92.2 6.6 0.00014 33.5 13.8 114 395-512 70-191 (207)
295 smart00299 CLH Clathrin heavy 92.2 5.5 0.00012 32.5 15.3 126 83-225 10-136 (140)
296 COG3629 DnrI DNA-binding trans 92.1 0.91 2E-05 41.5 8.4 59 484-542 157-215 (280)
297 PF13174 TPR_6: Tetratricopept 91.9 0.42 9E-06 27.1 4.1 26 487-512 7-32 (33)
298 COG4649 Uncharacterized protei 91.9 2.8 6.1E-05 34.7 9.9 55 356-410 142-200 (221)
299 PF09613 HrpB1_HrpK: Bacterial 91.8 1.9 4.1E-05 35.5 9.0 119 412-535 7-130 (160)
300 PF13374 TPR_10: Tetratricopep 91.5 0.53 1.2E-05 28.5 4.6 29 481-509 3-31 (42)
301 PRK15180 Vi polysaccharide bio 91.4 2.7 5.8E-05 40.8 10.8 89 457-545 332-422 (831)
302 PF13170 DUF4003: Protein of u 91.3 7.3 0.00016 36.5 13.7 139 19-159 62-226 (297)
303 KOG4234 TPR repeat-containing 91.3 2.9 6.3E-05 35.6 9.6 100 422-523 105-211 (271)
304 COG1747 Uncharacterized N-term 91.3 17 0.00036 36.1 19.1 171 279-458 69-249 (711)
305 PF00637 Clathrin: Region in C 91.1 0.015 3.3E-07 47.9 -3.7 83 317-402 13-95 (143)
306 KOG1258 mRNA processing protei 91.1 19 0.00041 36.5 27.8 176 244-421 296-484 (577)
307 KOG4570 Uncharacterized conser 91.1 0.79 1.7E-05 41.7 6.6 107 37-145 52-165 (418)
308 PF07721 TPR_4: Tetratricopept 91.0 0.34 7.3E-06 25.9 2.8 24 515-538 2-25 (26)
309 KOG4648 Uncharacterized conser 90.8 0.8 1.7E-05 42.2 6.5 93 384-480 104-198 (536)
310 KOG2066 Vacuolar assembly/sort 90.5 25 0.00055 36.9 25.5 168 190-377 363-536 (846)
311 KOG4642 Chaperone-dependent E3 90.4 0.88 1.9E-05 39.8 6.1 77 464-540 26-104 (284)
312 PF13174 TPR_6: Tetratricopept 90.3 0.36 7.8E-06 27.4 2.8 29 516-544 2-30 (33)
313 PF13181 TPR_8: Tetratricopept 90.2 0.62 1.3E-05 26.7 3.8 29 515-543 2-30 (34)
314 PF08631 SPO22: Meiosis protei 90.2 16 0.00034 34.1 24.8 159 379-541 86-273 (278)
315 KOG1586 Protein required for f 89.8 13 0.00029 32.7 15.1 19 494-512 209-227 (288)
316 PF13374 TPR_10: Tetratricopep 89.5 0.7 1.5E-05 28.0 3.8 29 515-543 3-31 (42)
317 COG3629 DnrI DNA-binding trans 89.5 4.1 8.9E-05 37.3 10.0 75 381-456 157-235 (280)
318 PF07035 Mic1: Colon cancer-as 89.3 10 0.00022 31.8 11.3 135 136-305 15-149 (167)
319 COG1747 Uncharacterized N-term 89.3 25 0.00053 35.0 22.8 176 344-526 64-251 (711)
320 PF10602 RPN7: 26S proteasome 89.2 4.2 9.2E-05 34.7 9.5 57 247-303 38-100 (177)
321 PRK09687 putative lyase; Provi 89.2 19 0.00041 33.6 27.0 17 181-197 35-51 (280)
322 cd00923 Cyt_c_Oxidase_Va Cytoc 89.2 2.9 6.3E-05 30.8 7.0 63 392-456 22-84 (103)
323 PF14853 Fis1_TPR_C: Fis1 C-te 89.0 1.8 3.9E-05 28.0 5.4 36 484-519 5-40 (53)
324 PF02284 COX5A: Cytochrome c o 89.0 3.1 6.7E-05 31.0 7.1 61 394-456 27-87 (108)
325 PF06552 TOM20_plant: Plant sp 88.8 1.1 2.5E-05 37.4 5.5 13 428-440 7-19 (186)
326 PF04097 Nic96: Nup93/Nic96; 88.4 37 0.0008 35.9 22.9 48 80-129 112-159 (613)
327 KOG1586 Protein required for f 88.4 17 0.00037 32.1 17.0 91 454-544 119-225 (288)
328 KOG1550 Extracellular protein 87.8 38 0.00082 35.3 22.3 148 391-544 378-539 (552)
329 TIGR02508 type_III_yscG type I 87.7 9 0.0002 28.5 8.7 59 253-314 47-105 (115)
330 PF13431 TPR_17: Tetratricopep 87.6 0.67 1.4E-05 26.7 2.5 22 447-468 12-33 (34)
331 KOG0376 Serine-threonine phosp 87.5 0.97 2.1E-05 43.9 5.0 87 456-542 12-100 (476)
332 PF00637 Clathrin: Region in C 87.5 0.68 1.5E-05 38.0 3.6 84 121-209 13-96 (143)
333 KOG0276 Vesicle coat complex C 87.4 15 0.00033 37.1 12.8 151 356-540 596-747 (794)
334 TIGR02561 HrpB1_HrpK type III 87.3 4.6 9.9E-05 32.7 7.8 47 423-474 21-70 (153)
335 TIGR03504 FimV_Cterm FimV C-te 86.9 1.3 2.9E-05 27.3 3.7 27 518-544 3-29 (44)
336 COG4455 ImpE Protein of avirul 86.8 2.9 6.2E-05 36.2 6.7 64 451-514 4-69 (273)
337 PF02284 COX5A: Cytochrome c o 86.7 6.7 0.00014 29.3 7.7 51 471-521 36-86 (108)
338 COG4649 Uncharacterized protei 86.7 18 0.00038 30.3 15.7 121 387-508 68-195 (221)
339 COG3947 Response regulator con 86.7 2.6 5.7E-05 38.1 6.7 61 482-542 281-341 (361)
340 PF13170 DUF4003: Protein of u 86.6 28 0.00061 32.7 15.2 137 292-458 78-227 (297)
341 PF09986 DUF2225: Uncharacteri 86.4 5.9 0.00013 35.0 9.0 64 481-544 119-195 (214)
342 smart00028 TPR Tetratricopepti 86.1 1.8 3.9E-05 23.6 4.1 28 484-511 5-32 (34)
343 PRK11619 lytic murein transgly 86.0 51 0.0011 35.0 35.4 378 50-449 100-512 (644)
344 cd00923 Cyt_c_Oxidase_Va Cytoc 86.0 6.4 0.00014 29.1 7.2 49 473-521 35-83 (103)
345 PF10345 Cohesin_load: Cohesin 85.9 51 0.0011 34.9 24.6 49 491-539 372-429 (608)
346 KOG0545 Aryl-hydrocarbon recep 85.7 9.1 0.0002 33.9 9.2 61 483-543 233-293 (329)
347 COG4785 NlpI Lipoprotein NlpI, 85.5 24 0.00052 30.8 15.3 158 345-510 98-267 (297)
348 PF14561 TPR_20: Tetratricopep 85.3 3.3 7.1E-05 30.6 5.8 43 501-543 9-51 (90)
349 KOG1464 COP9 signalosome, subu 85.3 28 0.00061 31.4 17.3 242 258-506 40-329 (440)
350 COG4105 ComL DNA uptake lipopr 84.7 30 0.00064 31.2 23.2 189 282-514 40-238 (254)
351 KOG0276 Vesicle coat complex C 84.7 14 0.00031 37.3 11.2 151 193-371 596-746 (794)
352 PF06552 TOM20_plant: Plant sp 84.6 3 6.6E-05 35.0 5.8 43 496-545 96-138 (186)
353 KOG1308 Hsp70-interacting prot 84.5 0.68 1.5E-05 42.8 2.2 87 460-546 126-214 (377)
354 COG5159 RPN6 26S proteasome re 83.0 37 0.0008 31.0 14.0 161 383-543 9-194 (421)
355 smart00028 TPR Tetratricopepti 83.0 2.4 5.3E-05 23.1 3.6 29 515-543 2-30 (34)
356 smart00386 HAT HAT (Half-A-TPR 81.7 3.6 7.7E-05 22.9 3.9 30 494-523 1-30 (33)
357 KOG1464 COP9 signalosome, subu 81.0 43 0.00093 30.3 17.6 182 288-469 39-252 (440)
358 PRK13800 putative oxidoreducta 80.8 1E+02 0.0022 34.6 24.4 256 170-440 622-880 (897)
359 PF11207 DUF2989: Protein of u 80.4 17 0.00038 31.3 8.9 73 460-534 119-198 (203)
360 KOG1550 Extracellular protein 80.3 54 0.0012 34.2 14.5 48 495-544 379-427 (552)
361 PRK12798 chemotaxis protein; R 80.3 61 0.0013 31.7 20.4 150 359-510 125-287 (421)
362 PF11207 DUF2989: Protein of u 79.1 15 0.00032 31.8 8.1 22 478-499 176-197 (203)
363 KOG0890 Protein kinase of the 79.0 1.6E+02 0.0036 35.9 26.6 306 188-510 1388-1732(2382)
364 TIGR02508 type_III_yscG type I 78.3 19 0.00042 26.8 7.3 88 28-119 19-106 (115)
365 KOG0551 Hsp90 co-chaperone CNS 78.2 12 0.00025 34.9 7.6 93 450-542 83-181 (390)
366 PF10579 Rapsyn_N: Rapsyn N-te 77.8 5.7 0.00012 28.1 4.3 46 492-537 18-66 (80)
367 KOG4507 Uncharacterized conser 75.4 9.2 0.0002 38.4 6.6 99 424-525 619-721 (886)
368 KOG4279 Serine/threonine prote 75.4 33 0.00071 35.9 10.5 49 456-514 352-400 (1226)
369 PF04910 Tcf25: Transcriptiona 74.9 86 0.0019 30.5 14.4 64 479-542 99-167 (360)
370 KOG2471 TPR repeat-containing 74.7 80 0.0017 31.5 12.3 103 354-459 248-380 (696)
371 PF04097 Nic96: Nup93/Nic96; 74.0 1.3E+02 0.0027 32.0 17.1 46 213-258 110-158 (613)
372 PRK15180 Vi polysaccharide bio 73.9 98 0.0021 30.7 24.7 116 28-146 303-422 (831)
373 KOG2063 Vacuolar assembly/sort 73.2 1E+02 0.0022 33.7 14.1 26 279-304 507-532 (877)
374 PF12862 Apc5: Anaphase-promot 73.0 16 0.00034 27.3 6.2 54 490-543 8-70 (94)
375 KOG4570 Uncharacterized conser 73.0 63 0.0014 30.1 10.7 94 378-474 65-161 (418)
376 PF13762 MNE1: Mitochondrial s 72.8 39 0.00084 27.6 8.5 90 41-130 29-130 (145)
377 PF04190 DUF410: Protein of un 72.8 79 0.0017 29.1 19.7 157 257-440 2-169 (260)
378 cd08819 CARD_MDA5_2 Caspase ac 72.2 18 0.00038 26.3 5.7 66 33-100 21-86 (88)
379 KOG4077 Cytochrome c oxidase, 72.2 27 0.00058 27.4 7.0 71 395-476 67-137 (149)
380 PF08311 Mad3_BUB1_I: Mad3/BUB 71.8 36 0.00079 27.1 8.3 43 498-540 81-125 (126)
381 PF09670 Cas_Cas02710: CRISPR- 71.6 97 0.0021 30.5 12.8 54 386-440 140-197 (379)
382 COG4455 ImpE Protein of avirul 71.2 22 0.00048 31.0 7.1 127 379-514 3-139 (273)
383 PF14863 Alkyl_sulf_dimr: Alky 71.1 23 0.00049 28.8 7.0 64 464-530 57-120 (141)
384 cd08819 CARD_MDA5_2 Caspase ac 70.2 19 0.00041 26.2 5.5 37 258-295 49-85 (88)
385 TIGR03504 FimV_Cterm FimV C-te 70.1 12 0.00026 23.1 4.0 24 282-305 5-28 (44)
386 PF10366 Vps39_1: Vacuolar sor 69.7 33 0.00071 26.4 7.3 26 279-304 42-67 (108)
387 PRK10941 hypothetical protein; 69.7 28 0.00061 32.1 8.2 68 451-518 184-253 (269)
388 KOG4507 Uncharacterized conser 69.6 14 0.00029 37.3 6.3 88 458-545 617-707 (886)
389 PF12862 Apc5: Anaphase-promot 69.5 30 0.00065 25.7 7.0 26 484-509 45-70 (94)
390 COG4976 Predicted methyltransf 68.7 10 0.00022 33.2 4.7 56 490-545 5-60 (287)
391 PF09477 Type_III_YscG: Bacter 68.4 48 0.001 25.3 7.4 89 19-110 11-99 (116)
392 KOG3364 Membrane protein invol 68.4 30 0.00065 27.6 6.7 72 445-516 29-107 (149)
393 KOG4642 Chaperone-dependent E3 67.2 94 0.002 27.8 10.5 84 423-509 21-107 (284)
394 KOG3824 Huntingtin interacting 67.2 17 0.00036 33.5 5.9 52 491-542 127-178 (472)
395 COG2912 Uncharacterized conser 67.1 53 0.0011 30.0 9.0 60 485-544 186-245 (269)
396 PF04910 Tcf25: Transcriptiona 66.6 1.3E+02 0.0029 29.3 14.5 156 376-542 39-221 (360)
397 PF10579 Rapsyn_N: Rapsyn N-te 66.4 20 0.00043 25.5 4.9 16 425-440 19-34 (80)
398 PF07163 Pex26: Pex26 protein; 66.2 72 0.0016 29.3 9.5 15 353-367 90-104 (309)
399 PF10345 Cohesin_load: Cohesin 66.0 1.9E+02 0.004 30.8 34.4 175 34-209 41-251 (608)
400 PF13929 mRNA_stabil: mRNA sta 65.9 1.1E+02 0.0025 28.3 13.0 59 147-207 199-262 (292)
401 PF04190 DUF410: Protein of un 65.5 1.1E+02 0.0025 28.1 16.6 159 358-543 2-170 (260)
402 KOG0991 Replication factor C, 65.4 1E+02 0.0022 27.5 11.7 55 366-422 228-282 (333)
403 COG0790 FOG: TPR repeat, SEL1 65.0 1.2E+02 0.0027 28.3 19.8 146 392-544 92-267 (292)
404 PF11846 DUF3366: Domain of un 64.8 32 0.0007 29.9 7.4 37 475-511 139-175 (193)
405 PHA02875 ankyrin repeat protei 64.6 1.6E+02 0.0034 29.4 19.7 48 222-270 140-190 (413)
406 PF07163 Pex26: Pex26 protein; 64.1 96 0.0021 28.5 9.9 88 282-369 89-181 (309)
407 KOG2422 Uncharacterized conser 63.9 1.5E+02 0.0032 30.4 12.0 121 422-544 248-408 (665)
408 PF13762 MNE1: Mitochondrial s 63.4 82 0.0018 25.8 9.7 50 376-425 78-128 (145)
409 PF11846 DUF3366: Domain of un 63.4 32 0.0007 29.9 7.1 51 424-474 120-170 (193)
410 PF04781 DUF627: Protein of un 62.2 55 0.0012 25.2 7.0 44 498-541 62-105 (111)
411 PF07720 TPR_3: Tetratricopept 62.1 30 0.00064 20.3 4.9 18 485-502 6-23 (36)
412 PHA02875 ankyrin repeat protei 61.4 1.8E+02 0.0039 29.0 18.5 198 35-244 16-229 (413)
413 KOG4077 Cytochrome c oxidase, 61.4 54 0.0012 25.8 6.8 49 473-521 77-125 (149)
414 PF12968 DUF3856: Domain of Un 61.0 71 0.0015 25.0 7.3 84 459-542 20-128 (144)
415 COG5191 Uncharacterized conser 59.8 22 0.00047 32.9 5.2 81 443-523 102-185 (435)
416 PF11663 Toxin_YhaV: Toxin wit 59.0 14 0.00031 29.3 3.5 35 89-125 104-138 (140)
417 COG4976 Predicted methyltransf 59.0 16 0.00035 32.1 4.1 57 457-513 4-62 (287)
418 KOG1308 Hsp70-interacting prot 58.6 12 0.00025 35.1 3.5 116 424-542 126-243 (377)
419 PF14561 TPR_20: Tetratricopep 58.4 72 0.0016 23.5 7.9 54 478-531 20-75 (90)
420 PF08424 NRDE-2: NRDE-2, neces 58.4 1.7E+02 0.0038 27.9 14.2 117 465-593 48-170 (321)
421 KOG2063 Vacuolar assembly/sort 57.7 3E+02 0.0065 30.4 18.5 29 81-109 505-533 (877)
422 PRK13342 recombination factor 57.4 2.1E+02 0.0046 28.6 15.2 45 380-424 230-277 (413)
423 KOG0545 Aryl-hydrocarbon recep 56.0 91 0.002 28.0 8.1 69 450-518 232-302 (329)
424 TIGR02270 conserved hypothetic 54.9 2.3E+02 0.005 28.2 23.9 171 86-268 44-214 (410)
425 KOG0376 Serine-threonine phosp 54.7 27 0.00059 34.4 5.4 101 385-490 12-115 (476)
426 PF14432 DYW_deaminase: DYW fa 53.0 15 0.00032 28.7 2.9 27 550-580 2-28 (116)
427 COG2909 MalT ATP-dependent tra 52.8 3.4E+02 0.0075 29.6 32.3 217 322-541 426-686 (894)
428 smart00777 Mad3_BUB1_I Mad3/BU 51.7 1.2E+02 0.0026 24.1 7.8 40 499-538 82-123 (125)
429 KOG4814 Uncharacterized conser 51.6 1.7E+02 0.0036 30.5 10.2 86 459-544 365-458 (872)
430 PF12796 Ank_2: Ankyrin repeat 50.8 78 0.0017 22.9 6.5 14 60-73 5-18 (89)
431 KOG0686 COP9 signalosome, subu 50.4 2.6E+02 0.0055 27.4 14.6 58 247-304 152-215 (466)
432 COG2909 MalT ATP-dependent tra 50.4 3.8E+02 0.0082 29.4 26.9 220 254-474 424-685 (894)
433 PRK13800 putative oxidoreducta 50.1 4.2E+02 0.0092 29.9 27.7 28 235-262 625-652 (897)
434 KOG0292 Vesicle coat complex C 49.8 27 0.00058 37.3 4.8 48 458-508 653-700 (1202)
435 PF11817 Foie-gras_1: Foie gra 49.1 1.2E+02 0.0027 27.6 8.7 56 485-540 183-244 (247)
436 KOG0292 Vesicle coat complex C 48.6 4E+02 0.0087 29.2 12.9 180 286-509 603-782 (1202)
437 TIGR02270 conserved hypothetic 48.4 2.9E+02 0.0063 27.5 23.5 90 171-261 88-177 (410)
438 PF10366 Vps39_1: Vacuolar sor 48.4 1.2E+02 0.0027 23.3 7.3 28 81-108 40-67 (108)
439 COG3947 Response regulator con 48.4 2.3E+02 0.005 26.4 16.2 59 380-439 282-340 (361)
440 PF11848 DUF3368: Domain of un 48.1 50 0.0011 20.8 4.2 34 90-123 12-45 (48)
441 cd08326 CARD_CASP9 Caspase act 48.1 43 0.00092 24.4 4.3 33 258-290 43-75 (84)
442 PF11848 DUF3368: Domain of un 47.5 70 0.0015 20.2 5.3 34 387-420 12-45 (48)
443 KOG0889 Histone acetyltransfer 46.6 8E+02 0.017 32.1 25.3 112 92-209 2392-2508(3550)
444 KOG4567 GTPase-activating prot 46.4 2.6E+02 0.0055 26.3 10.1 73 397-475 263-345 (370)
445 PF14689 SPOB_a: Sensor_kinase 45.9 26 0.00057 23.6 2.8 14 524-537 33-46 (62)
446 PF10516 SHNi-TPR: SHNi-TPR; 45.2 57 0.0012 19.4 3.8 28 515-542 2-29 (38)
447 PF10255 Paf67: RNA polymerase 44.7 1.4E+02 0.003 29.5 8.4 57 247-303 124-191 (404)
448 PF13934 ELYS: Nuclear pore co 44.2 2.4E+02 0.0052 25.3 11.1 113 153-267 79-198 (226)
449 PLN03192 Voltage-dependent pot 43.6 4E+02 0.0086 29.7 13.0 46 226-271 600-645 (823)
450 KOG3824 Huntingtin interacting 43.3 35 0.00076 31.5 3.9 56 460-515 128-185 (472)
451 PF11768 DUF3312: Protein of u 43.2 3.4E+02 0.0073 27.9 10.9 56 350-405 412-472 (545)
452 PF04090 RNA_pol_I_TF: RNA pol 42.9 1.7E+02 0.0036 25.5 7.8 61 482-542 43-104 (199)
453 PLN03192 Voltage-dependent pot 42.8 5.2E+02 0.011 28.8 14.0 50 221-270 626-677 (823)
454 PF14689 SPOB_a: Sensor_kinase 42.5 60 0.0013 21.9 4.2 25 416-440 27-51 (62)
455 KOG1498 26S proteasome regulat 42.2 3.4E+02 0.0073 26.5 15.6 195 359-555 25-253 (439)
456 KOG3783 Uncharacterized conser 41.2 4.1E+02 0.0089 27.2 21.4 68 477-544 444-521 (546)
457 COG0735 Fur Fe2+/Zn2+ uptake r 41.2 1.8E+02 0.0039 23.9 7.6 62 298-360 8-69 (145)
458 COG5191 Uncharacterized conser 40.9 66 0.0014 29.9 5.2 71 476-546 103-174 (435)
459 COG4259 Uncharacterized protei 40.6 1.1E+02 0.0023 23.0 5.3 26 489-514 81-106 (121)
460 KOG2659 LisH motif-containing 40.5 2.7E+02 0.0058 24.9 10.0 113 408-523 22-147 (228)
461 KOG2908 26S proteasome regulat 40.3 81 0.0018 29.8 5.8 86 84-171 79-176 (380)
462 KOG4521 Nuclear pore complex, 40.1 6.2E+02 0.013 28.9 14.6 57 415-473 986-1046(1480)
463 cd00280 TRFH Telomeric Repeat 39.0 1.1E+02 0.0024 26.1 5.8 28 488-516 119-146 (200)
464 KOG0530 Protein farnesyltransf 38.9 3.1E+02 0.0068 25.2 12.4 72 479-550 111-183 (318)
465 COG0735 Fur Fe2+/Zn2+ uptake r 38.7 63 0.0014 26.5 4.6 52 11-64 19-70 (145)
466 KOG2297 Predicted translation 38.5 2E+02 0.0043 26.9 7.8 21 377-397 321-341 (412)
467 cd08326 CARD_CASP9 Caspase act 38.4 1.2E+02 0.0026 22.1 5.4 52 213-264 29-80 (84)
468 KOG2908 26S proteasome regulat 38.2 2.6E+02 0.0057 26.6 8.7 77 353-429 82-174 (380)
469 KOG0991 Replication factor C, 38.1 3E+02 0.0065 24.7 14.0 135 352-512 136-270 (333)
470 KOG0687 26S proteasome regulat 38.0 3.6E+02 0.0078 25.6 12.7 113 428-542 84-209 (393)
471 PF11768 DUF3312: Protein of u 37.9 1.7E+02 0.0038 29.9 8.1 92 53-145 412-508 (545)
472 cd08332 CARD_CASP2 Caspase act 37.4 68 0.0015 23.7 4.1 31 258-288 47-77 (90)
473 PRK10564 maltose regulon perip 37.2 76 0.0016 29.5 5.2 39 378-416 258-296 (303)
474 KOG4279 Serine/threonine prote 36.9 5.7E+02 0.012 27.5 12.9 189 332-544 184-396 (1226)
475 PF11817 Foie-gras_1: Foie gra 36.8 1.3E+02 0.0029 27.4 6.9 21 483-503 221-241 (247)
476 PF13929 mRNA_stabil: mRNA sta 36.7 3.6E+02 0.0077 25.2 18.2 113 362-474 144-264 (292)
477 KOG0403 Neoplastic transformat 36.6 4.4E+02 0.0096 26.2 19.0 375 53-462 218-616 (645)
478 cd00280 TRFH Telomeric Repeat 36.5 1.3E+02 0.0028 25.8 5.9 22 283-304 118-139 (200)
479 KOG2581 26S proteasome regulat 36.4 4.2E+02 0.0091 26.1 9.8 135 411-545 125-278 (493)
480 PRK10564 maltose regulon perip 35.9 78 0.0017 29.4 5.1 36 279-314 260-295 (303)
481 PF06957 COPI_C: Coatomer (COP 35.9 1.6E+02 0.0035 29.2 7.5 109 387-513 214-333 (422)
482 PF11663 Toxin_YhaV: Toxin wit 35.4 26 0.00057 27.9 1.8 34 23-58 104-137 (140)
483 KOG3807 Predicted membrane pro 35.3 3.9E+02 0.0086 25.3 11.3 17 458-474 285-301 (556)
484 PRK09857 putative transposase; 35.2 3.1E+02 0.0067 25.8 9.1 65 483-547 209-273 (292)
485 cd07153 Fur_like Ferric uptake 35.1 73 0.0016 24.7 4.3 48 19-66 5-52 (116)
486 KOG0686 COP9 signalosome, subu 34.7 4.6E+02 0.0099 25.8 15.2 58 348-405 152-215 (466)
487 COG5187 RPN7 26S proteasome re 34.5 3.9E+02 0.0083 24.9 11.0 24 414-437 117-140 (412)
488 COG2178 Predicted RNA-binding 34.3 3.1E+02 0.0067 23.8 9.1 19 524-542 131-149 (204)
489 PF08424 NRDE-2: NRDE-2, neces 34.2 4.2E+02 0.0092 25.3 17.0 161 374-545 16-211 (321)
490 PF09454 Vps23_core: Vps23 cor 34.2 96 0.0021 21.2 4.1 50 374-424 5-54 (65)
491 PF09670 Cas_Cas02710: CRISPR- 33.5 4.8E+02 0.01 25.7 12.3 54 286-340 141-198 (379)
492 PF07575 Nucleopor_Nup85: Nup8 33.5 2.4E+02 0.0051 29.7 8.9 23 289-311 508-530 (566)
493 PF03745 DUF309: Domain of unk 33.4 1E+02 0.0022 20.8 4.1 48 90-137 9-61 (62)
494 COG4941 Predicted RNA polymera 33.3 4.4E+02 0.0095 25.2 11.6 120 392-515 271-400 (415)
495 KOG3807 Predicted membrane pro 32.5 4.4E+02 0.0096 25.0 14.0 20 498-517 380-399 (556)
496 PF11838 ERAP1_C: ERAP1-like C 32.0 4.5E+02 0.0098 24.9 17.0 112 428-540 146-263 (324)
497 PF12926 MOZART2: Mitotic-spin 31.8 1.7E+02 0.0037 21.3 5.1 43 101-143 29-71 (88)
498 KOG2396 HAT (Half-A-TPR) repea 31.2 5.8E+02 0.013 26.0 30.3 433 30-474 87-556 (568)
499 PF09868 DUF2095: Uncharacteri 31.2 96 0.0021 23.8 3.9 41 18-59 65-105 (128)
500 PF09986 DUF2225: Uncharacteri 31.0 3.8E+02 0.0083 23.8 10.8 61 450-510 120-195 (214)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-84 Score=699.11 Aligned_cols=582 Identities=32% Similarity=0.567 Sum_probs=557.4
Q ss_pred CCCcchhhHHHHHHHhhc---CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHH
Q 037404 10 WFSKRRLLEEKLQNLHKC---KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTL 86 (605)
Q Consensus 10 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 86 (605)
++.|+.+ ++..++..| +++..+.++|..+.+.|+.||+.++|.|+.+|+++|++++|.++|++|++||..+||++
T Consensus 182 g~~Pd~~--t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~l 259 (857)
T PLN03077 182 GVRPDVY--TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAM 259 (857)
T ss_pred CCCCChh--HHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHH
Confidence 3445555 555555554 34455677777777777778888889999999999999999999999999999999999
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 037404 87 IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (605)
|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|+++|
T Consensus 260 i~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-- 337 (857)
T PLN03077 260 ISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG-- 337 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC-
Q 037404 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP- 241 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~- 241 (605)
+++.|.++|++|..+|..+||.+|.+|++.|++++|+++|++| ..||..||+.++.+|++.|+++.|.++++.+.
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 67999999999999999999999999998876
Q ss_pred ---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037404 242 ---HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318 (605)
Q Consensus 242 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 318 (605)
.++..+|+.|+++|++.|++++|.++|++|.+++..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||..++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999986 5999999999999
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHH
Q 037404 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
.+|++.|+++.+.+++..+.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 478 (605)
+|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.++.|+.|+..+|++++.+|++.|++++|.+++++|+++|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 99999999999999999999999999999999999999999668999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDN 558 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (605)
|..+|++|+.+|..+|+.+.++...+++.+++|+++..|..++++|...|+|++|.++.+.|.+.|++++||++|+++.+
T Consensus 656 d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 656 DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCCCCCc
Q 037404 559 EVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597 (605)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~ 597 (605)
.++.|.+++..||..++|+.+|+.+..+|++.||.|+++
T Consensus 736 ~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 736 KVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred EEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 999999999999999999999999999999999999987
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-75 Score=615.70 Aligned_cols=519 Identities=31% Similarity=0.520 Sum_probs=506.2
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhH
Q 037404 77 DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG-VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS 155 (605)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (605)
..+..+|+.+|.++.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++.+.+.+++..|.+.|+.||..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4577799999999999999999999999998865 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChH
Q 037404 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 156 l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
|+.+|++.| +++.|.++|++|+++|..+||.+|.+|++.|++++|+++|++| ..||..+|+.++.+|+..|..+
T Consensus 164 Li~~y~k~g--~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCG--MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCC--CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999 9999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred HHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037404 232 LAFELFEKIP----HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 232 ~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 307 (605)
.+.+++..+. .+|..+|++|+++|++.|++++|.++|+.|..++..+||.++.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976654 588999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHH
Q 037404 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387 (605)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 387 (605)
.||..||+.++.+|++.|+++.|.+++..+.+.|+.++..++++|+++|+++|++++|.++|++|.++|..+|++||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (605)
++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.++.|+.|+..+|+.++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998789999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 468 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
.+++++|+..|+..+|++++.+|...|+++.|..+++++.+..|++...|..++.+|.+.|++++|.++++.|.+.|+.+
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCCCCCc
Q 037404 548 PSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHAAKLS 597 (605)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~~~~~ 597 (605)
.||++|+++.+..+.|.+++..||..++|+..++.+..+|++.||.|+++
T Consensus 562 ~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 562 HPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999987
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2e-71 Score=598.23 Aligned_cols=509 Identities=26% Similarity=0.444 Sum_probs=449.6
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 107 (605)
+.++.+.+++..+.+.+..+++.++|.++..|++.|+++.|.++|++|++||+.+||++|.+|++.|++++|+++|++|.
T Consensus 100 ~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~ 179 (857)
T PLN03077 100 RAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444444444444445555556668889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHH
Q 037404 108 EKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187 (605)
Q Consensus 108 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~ 187 (605)
..|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++| +++.|.++|++|+++|..+||
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g--~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG--DVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC--CHHHHHHHHhcCCCCCcchhH
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC----CCChhHHHHHHHHHHhcC
Q 037404 188 SMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIVSWSTMVWGYSKDG 259 (605)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~ 259 (605)
++|.+|++.|++++|+++|.+| ..||..||+.++.+|++.|+.+.|.+++..+. .||..+|+.|+.+|++.|
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 337 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC
Confidence 9999999999999999999999 68999999999999999999999999998775 489999999999999999
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
++++|.++|++|..++..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+
T Consensus 338 ~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~ 417 (857)
T PLN03077 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417 (857)
T ss_pred CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
.|+.++..+++.|+++|++.|++++|.++|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++
T Consensus 418 ~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL 496 (857)
T PLN03077 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAAL 496 (857)
T ss_pred hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999986 5899999999999
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCC------------------------------chHHHHHHHHHhhhcCCHHHHHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILP------------------------------QVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
.+|++.|..+.+.+++..+.+ .|+.+ |..+|+++|.+|++.|+.++|.+
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~ 575 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVE 575 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHH
Confidence 998888888888888887776 46644 55556666666666666666666
Q ss_pred HHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 470 LVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 470 ~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+|++| ++.||..||+.++.+|.+.|.+++|.++|+.|.+.. .++..+|..++++|.+.|++++|.+++++|
T Consensus 576 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 576 LFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 66666 456666666666666666666666666666666432 223456666777777777777777766666
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-63 Score=526.08 Aligned_cols=497 Identities=18% Similarity=0.282 Sum_probs=446.3
Q ss_pred CCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcc-----cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHH
Q 037404 45 LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH-----LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYP 119 (605)
Q Consensus 45 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 119 (605)
..++...|..++..+++.|++++|.++|++|++++.. +++.++.+|.+.|..++|..+|+.|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 4567788889999999999999999999999865444 455677788999999999999998864 8999999
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccC----CCCeehHHHHHHHHHh
Q 037404 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG----ERDIVSWNSMIAGLVK 195 (605)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~ 195 (605)
.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.| +.+.|.++|++|. .||..+|+.+|.+|++
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G--~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG--KVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 9999999999987 4788999999999999
Q ss_pred CCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC------CCChhHHHHHHHHHHhcCCHHHHH
Q 037404 196 GGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP------HRNIVSWSTMVWGYSKDGDMEMAK 265 (605)
Q Consensus 196 ~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~ 265 (605)
.|++++|+++|++| ..||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999 57899999999999999999999999999884 488899999999999999999999
Q ss_pred HHHhhCCCCCc----ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 037404 266 LLFDRMPAKTL----VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR 341 (605)
Q Consensus 266 ~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (605)
++|+.|.+.+. .+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999986654 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
+.|+..+|+.++.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999985 68999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----c-------------------CCHHHHHHHHHhC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----S-------------------GRLKEALRLVQSM 474 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~ 474 (605)
++.+|++.|++++|.+++..|.+ .|+.||..+|++++..|.+ + +..++|..+|++|
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM 838 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET 838 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHH
Confidence 99999999999999999999998 5999999999999866432 2 2246799999999
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q 037404 475 ---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550 (605)
Q Consensus 475 ---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 550 (605)
++.||..+|+.++.+++..+..+.+..+++.+... .+.+..+|..+++.+.+. .++|..++++|.+.|+.|+..
T Consensus 839 ~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 839 ISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 78999999999998888888999988888876643 356677899999987322 368999999999999987764
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8e-63 Score=520.22 Aligned_cols=487 Identities=19% Similarity=0.277 Sum_probs=455.2
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCC-CCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCch
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDL-QRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (605)
.+...+.++|++++|.++|+.|.+.|+ +++..+++.++..|.+.|.+++|.++|+.|..|+..+|+.+|.+|++.|+++
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e 454 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDID 454 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHH
Confidence 555666677999999999999999996 5778888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhc
Q 037404 98 QAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMS 177 (605)
Q Consensus 98 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~ 177 (605)
.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.| ++++|.++|++
T Consensus 455 ~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G--~~eeAl~lf~~ 532 (1060)
T PLN03218 455 GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG--QVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cCC----CCeehHHHHHHHHHhCCChhHHHHHHhhc------CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC----C
Q 037404 178 MGE----RDIVSWNSMIAGLVKGGELSEARRLFDEM------PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----R 243 (605)
Q Consensus 178 ~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~ 243 (605)
|.+ ||..+|+.+|.+|++.|++++|.++|++| ..||..+|+.++.+|++.|++++|.++|+.|.+ +
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 963 89999999999999999999999999999 368999999999999999999999999999874 6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
+..+|+.++.+|++.|++++|.++|++|.+. +..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 7799999999999999999999999999864 555699999999999999999999999999999999999999999
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999999999999999999999999999999999999986 6899999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcc----c-------------------CCHHHHHHHHHHhHHhhCCCCchHHHH
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTH----A-------------------GFIDKGVQYFYSMERDYGILPQVEHYG 452 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 452 (605)
|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+ .|+.||..+|+
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~ 851 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLS 851 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHH
Confidence 99999999999999999999999876532 1 124679999999999 59999999999
Q ss_pred HHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 453 CMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
.++.++++.+..+.+..+++.| +..|+..+|++++.++.+. .++|..++++|.+..
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9999999999999999999988 4567789999999998432 468999999999974
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-59 Score=491.48 Aligned_cols=427 Identities=26% Similarity=0.429 Sum_probs=407.8
Q ss_pred hhhHHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCC
Q 037404 15 RLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNS 94 (605)
Q Consensus 15 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 94 (605)
..+..++..+.+.++++.+.++|..|.+.|+.||+.+++.|++.|+++|++++|.++|++|++||..+||++|.+|++.|
T Consensus 124 ~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g 203 (697)
T PLN03081 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAG 203 (697)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCc
Confidence 33455677777778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHH
Q 037404 95 LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~ 174 (605)
++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.+++..+.+.|+.||..+++.|+++|+++| ++++|.++
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g--~~~~A~~v 281 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG--DIEDARCV 281 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC--CHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC----CCChh
Q 037404 175 FMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMNLAFELFEKIP----HRNIV 246 (605)
Q Consensus 175 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~ 246 (605)
|++|.++|+.+||.+|.+|++.|++++|+++|++| ..||..||+.++.+|++.|+++.|.++++.|. .+|..
T Consensus 282 f~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 282 FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred HHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 99999999999999999999999999999999999 68999999999999999999999999998876 57889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
+|++|+++|++.|++++|.++|++|.+++..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 441 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL 441 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 327 LGLGMKVHASINK-YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 327 ~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++. .|+..+|++++.+|...|+++.|..+++++.
T Consensus 442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 9999999999975 6999999999999999999999999999999987 7899999999999999999999999999987
Q ss_pred HCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC
Q 037404 405 DEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446 (605)
Q Consensus 405 ~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (605)
+ +.|+ ..+|..++..|++.|++++|.++++.|.+ .|+..
T Consensus 522 ~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 522 G--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred C--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 5 4564 67899999999999999999999999998 47754
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=8.6e-33 Score=306.16 Aligned_cols=515 Identities=11% Similarity=0.066 Sum_probs=372.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCC
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSL 95 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~ 95 (605)
.++..+...|+++++...+..+.+.. +.++..+..+...+.+.|++++|.++|+++.+ .+...|..+...+...|+
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 56677778899999988888887665 45677788888888888999999999887652 345566777778888888
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHH
Q 037404 96 NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175 (605)
Q Consensus 96 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~ 175 (605)
+++|.+.|+.+.+.... +......++..+...|+++.|..+++.+.+.. +++..++..+...|...| +.+.|.+.|
T Consensus 413 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--~~~~A~~~~ 488 (899)
T TIGR02917 413 PSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKG--DLAKAREAF 488 (899)
T ss_pred hHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCC--CHHHHHHHH
Confidence 88888888888775432 23344556666778888888888888877643 445667778888888888 888888888
Q ss_pred hccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC--C-CCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChh
Q 037404 176 MSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP--E-RDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIV 246 (605)
Q Consensus 176 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 246 (605)
++..+ .+...+..+...+...|++++|.+.|+++. . .+..++..+...+...|+.++|..+++++.+ .+..
T Consensus 489 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 568 (899)
T TIGR02917 489 EKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIE 568 (899)
T ss_pred HHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 77643 244566677777888888888888888772 2 2455677777777778888888888777643 3445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
.+..++..|.+.|++++|..+++.+.+. +...|..++..+...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 569 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 569 PALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 6677777788888888888887776543 33347777777888888888888888777653 3345566677777777
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 400 (605)
.|++++|..+++.+.+.. +.+...+..++..+...|++++|..+++.+. +.+...+..+...+...|++++|...|
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788888888887777654 3356677777777777788888877777765 235566677777777777888888877
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEP 478 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p 478 (605)
+++... .|+..++..+..++...|++++|.+.++.+.. ..+.+...+..++..|...|++++|.+.|+++ ..++
T Consensus 727 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 727 RKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 777764 34446666677777777777777777777766 34556667777777777777777777777776 2234
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
+...++.++..+...|+ .+|+..++++.+..|+++..+..++.++...|++++|.++++++.+.++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56667777777777777 6677777777777777777777777777777777777777777777654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.9e-32 Score=301.97 Aligned_cols=514 Identities=14% Similarity=0.044 Sum_probs=386.8
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCC
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSL 95 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~ 95 (605)
.++..+...|+.+.+...+..+++.. +.++..+..+...+.+.|++++|...++.+. +.+...+..+...+.+.|+
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 378 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGD 378 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCC
Confidence 45566677788888888888887764 4556667777788888888888888887765 2345567777788888888
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHH
Q 037404 96 NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLF 175 (605)
Q Consensus 96 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~ 175 (605)
+++|.++|+++.+.. +.+...+..+...+...|+++.|...++.+.+.... .......++..+.+.| +.+.|..++
T Consensus 379 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~--~~~~A~~~~ 454 (899)
T TIGR02917 379 FEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSG--QFDKALAAA 454 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcC--CHHHHHHHH
Confidence 888888888887653 224455666666777888888888888888775532 3345566777888888 888888888
Q ss_pred hccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC--CC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChh
Q 037404 176 MSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP--ER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIV 246 (605)
Q Consensus 176 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 246 (605)
+++.. .+...|..+...+...|++++|...|+++. .| +...+..+...+...|++++|.+.++.+.+ .+..
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 534 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLR 534 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH
Confidence 87754 355678888888888888888888888772 23 344566777778888888888888877653 3556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKT---LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
++..+...+.+.|+.++|...++++...+ ...+..++..+...|++++|..+++.+.+.. +.+...+..+..++..
T Consensus 535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 613 (899)
T TIGR02917 535 AILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA 613 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 77788888888888888888888775433 3346677788888888888888888887653 4566777888888888
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 400 (605)
.|+++.|...++.+.+.. +.+...+..+..++...|++++|...|+++. +.+..++..++..+...|++++|..++
T Consensus 614 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 614 AGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888887654 3356667778888888888888888887765 335677888888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEP 478 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p 478 (605)
+.+.+.+ +++...+..+...+...|++++|...++.+.. ..|+..++..++..+.+.|++++|.+.++++ ..+.
T Consensus 693 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 768 (899)
T TIGR02917 693 KSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN 768 (899)
T ss_pred HHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 8887764 44566677777788888888888888888866 2355566777888888888888888888777 3344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+...+..++..|...|++++|...|+++++..|+++.++..+++++...|+ ++|+++++++.+..
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 566777788888888888888888888888888888888888888888888 77888888887754
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=1.4e-24 Score=240.36 Aligned_cols=519 Identities=13% Similarity=0.048 Sum_probs=314.6
Q ss_pred CCcchhhHHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC--CCccc-H----
Q 037404 11 FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD--PDVHL-Y---- 83 (605)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~-~---- 83 (605)
..|.+.+..-++.-.+.++.+.|.+.+..+.... +.|+.++..++..+.+.|+.++|.+.+++..+ |+... +
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~ 103 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRT 103 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3455555566777778899999999999888764 56788899999999999999999999998863 33222 1
Q ss_pred ------------HHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCc
Q 037404 84 ------------NTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDI 150 (605)
Q Consensus 84 ------------~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 150 (605)
..+...+.+.|++++|+..|+.+.+.+ +|+.. ............|+.++|...++.+.+.. +.+.
T Consensus 104 ~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~ 181 (1157)
T PRK11447 104 TMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT 181 (1157)
T ss_pred HHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence 223346788899999999999998753 33322 11112222335689999999999999875 3356
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHhccCCCCe-----------------------ehHH--------------------
Q 037404 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI-----------------------VSWN-------------------- 187 (605)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~-----------------------~~~~-------------------- 187 (605)
..+..+...+...| +.++|...++++..... ..+.
T Consensus 182 ~~~~~LA~ll~~~g--~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 182 GLRNTLALLLFSSG--RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred HHHHHHHHHHHccC--CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 67888889998889 99999988887632110 0000
Q ss_pred --------------HHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC--CCh---
Q 037404 188 --------------SMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH--RNI--- 245 (605)
Q Consensus 188 --------------~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~--- 245 (605)
.....+...|++++|+..|++. ..| +...+..+..++.+.|++++|...|++..+ |+.
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 1123456678888888888877 334 556777788888888888888888877654 221
Q ss_pred hHH------------HHHHHHHHhcCCHHHHHHHHhhCCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037404 246 VSW------------STMVWGYSKDGDMEMAKLLFDRMPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310 (605)
Q Consensus 246 ~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 310 (605)
..| ......+.+.|++++|+..|+++...++ ..+..+...+...|++++|++.|++..+.. +.+
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~ 418 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGN 418 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 111 1224456778888888888888765433 236667788888888888888888887743 222
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC--------CCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhH
Q 037404 311 DGTLISILAACAESGLLGLGMKVHASINKYRF--------KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVS 379 (605)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 379 (605)
...+..+...+. .++.++|..+++.+..... ......+..+...+...|++++|++.|++.. +.++..
T Consensus 419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~ 497 (1157)
T PRK11447 419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL 497 (1157)
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 333333333332 2233333333332211100 0001112223333444455555555444433 112333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHH-----------------------------------------
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVG----------------------------------------- 417 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~----------------------------------------- 417 (605)
+..+...|.+.|++++|...++++.+. .| +...+..
T Consensus 498 ~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 498 TYRLAQDLRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 444444444455555555555444432 12 1111111
Q ss_pred ---HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 037404 418 ---VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRK 492 (605)
Q Consensus 418 ---ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 492 (605)
....+...|+.++|..+++ ..+.+...+..+...+.+.|++++|++.|+++ ...| +...+..++..+..
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~------~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR------QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH------hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 1223334444444444433 12334445556666677777777777777666 3333 35566666677777
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|++++|++.++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 7777777777777766667766666777777777777777777777766543
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.3e-24 Score=235.29 Aligned_cols=510 Identities=13% Similarity=0.030 Sum_probs=374.6
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHH-HhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCC
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS-LALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNS 94 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~ 94 (605)
..+.++...|+.++|.+.++.+++.+ +++.......... ....|+.++|++.|+++.+ .+...+..+...+...|
T Consensus 117 ~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 117 QQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccC
Confidence 55668888999999999999998754 3443322222222 2345899999999998873 35557778888999999
Q ss_pred CchHHHHHHHHHHhCCC------------------C--------------CCcccH-------------------H--HH
Q 037404 95 LNAQAFRVFLDMQEKGV------------------F--------------TDNFTY-------------------P--FL 121 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~-------------------~--~l 121 (605)
+.++|+..++++.+... . |+...+ . ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 99999999998865321 0 110000 0 01
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC--CCe---ehHH---------
Q 037404 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDI---VSWN--------- 187 (605)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~---~~~~--------- 187 (605)
...+...|++++|...++..++.. +.+..++..|...|.+.| +.++|+..|++..+ |+. ..|.
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g--~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG--DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW 352 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence 123456688888888888887754 235667778888888888 88888888877654 221 1121
Q ss_pred ---HHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhc
Q 037404 188 ---SMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKD 258 (605)
Q Consensus 188 ---~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 258 (605)
.....+.+.|++++|+..|++. ..| +...+..+...+...|++++|++.|+++.+ .+...+..+...|. .
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-h
Confidence 1234566788888888888888 233 444566677788888888888888887764 23455666666664 4
Q ss_pred CCHHHHHHHHhhCCCCC------------cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 259 GDMEMAKLLFDRMPAKT------------LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
++.++|..+++.+.... ...+..+...+...|++++|+..|++.++.. +-+...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 56788888887665321 1124556677888999999999999998853 2245667778889999999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----h---------hHHHHHHHHHHHcCCh
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD----L---------VSWNAMLYGLAMHGQG 393 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~ 393 (605)
+++|...++.+.+... .+...+..+...+...++.++|...++.+.... . ..+..+...+...|++
T Consensus 511 ~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999999999887543 345555556666788899999999999876321 1 1223456678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHh
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQS 473 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (605)
++|+.+++. .+.+...+..+...+.+.|++++|+..|+++.+ ..+.+...+..++..|...|++++|++.++.
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999872 244556777888899999999999999999988 3455788999999999999999999999998
Q ss_pred C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc------hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 474 M-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG------NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 474 ~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
. ...|+ ...+..+..++...|++++|.++++++....|+++. .+..++.++...|+.++|+..|++...
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 34444 556777888899999999999999999998765543 566779999999999999999999975
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=5.5e-21 Score=202.21 Aligned_cols=503 Identities=12% Similarity=0.064 Sum_probs=318.0
Q ss_pred hhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC--CCcccHHHHHHHHHhCCCchHHHHH
Q 037404 25 HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD--PDVHLYNTLIRACVQNSLNAQAFRV 102 (605)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (605)
...|+.++|...|+..++.. |-++.++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 34499999999999999876 45588889999999999999999999998873 3223333333222 777788888
Q ss_pred HHHHHhCCCCCCcccHHHH----------------------------------------HHHhhccCCHHHHHHHHHHHH
Q 037404 103 FLDMQEKGVFTDNFTYPFL----------------------------------------LKACNGKNWFHLVQMIHALIY 142 (605)
Q Consensus 103 ~~~m~~~~~~p~~~~~~~l----------------------------------------l~~~~~~~~~~~a~~~~~~~~ 142 (605)
|+++...... +...+..+ .+.|...+++++|..++..+.
T Consensus 131 ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 131 VEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 8888765321 22222222 333444555555555555555
Q ss_pred HhCCCCCcchhhHHHHHHHh-cCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcC-----CCCcch
Q 037404 143 KCGYFGDIFVPNSLIDSYSK-CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP-----ERDAVS 216 (605)
Q Consensus 143 ~~~~~~~~~~~~~l~~~~~~-~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~ 216 (605)
+.+.. +......|..+|.. .+ + +.+..+++.....+...+..++..+.+.|+.++|..++.++. .|+..+
T Consensus 210 k~~pl-~~~~~~~L~~ay~q~l~--~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 210 QQNTL-SAAERRQWFDVLLAGQL--D-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred hcCCC-CHHHHHHHHHHHHHhhC--H-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 54421 22333444444444 23 3 444444443223345555566666666666666666666651 111111
Q ss_pred HH------------------------------HHHHHHHcCCChHHHHHHHHhCCC------------------------
Q 037404 217 WN------------------------------TILDGYAKAGEMNLAFELFEKIPH------------------------ 242 (605)
Q Consensus 217 ~~------------------------------~ll~~~~~~~~~~~a~~~~~~~~~------------------------ 242 (605)
+. .++..+.+.++++.++++...-..
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 365 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLA 365 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHH
Confidence 11 113334444555544444221110
Q ss_pred --------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--Cc---c-cHHHHHHHHHhCCC---hHHHHHH-------
Q 037404 243 --------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK--TL---V-PWTIIISGYAEKGM---AKEAARL------- 298 (605)
Q Consensus 243 --------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~l~~~~~~~~~---~~~a~~~------- 298 (605)
.+....-.+.-...+.|+.++|.++|+..... +. . .-.-++..|.+.+. ..++..+
T Consensus 366 ~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 445 (987)
T PRK09782 366 RLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA 445 (987)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc
Confidence 01111112222344566677777777665431 11 1 12244455554443 2222222
Q ss_pred ---------------HHHHHHc-CC-CC--CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 299 ---------------YDQMEEA-GL-KP--DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 299 ---------------~~~m~~~-~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 446 EQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQV 522 (987)
T ss_pred hhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHC
Confidence 1111111 11 22 34455555555554 77778888777766554 3433333445555689
Q ss_pred CChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
|++++|...|+++. +++...+..+...+.+.|++++|...+++..+.+ |+. ..+..+.......|++++|...++
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~ 600 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLT 600 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998765 3444556677788889999999999999988754 433 333344445556799999999999
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
+..+ ..|+...+..+..++.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++.+|+++
T Consensus 601 ~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~ 677 (987)
T PRK09782 601 RSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP 677 (987)
T ss_pred HHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9976 3567888999999999999999999999988 44554 56788888899999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++..++.++...|++++|+..+++..+..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999864
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=9.5e-23 Score=191.32 Aligned_cols=438 Identities=16% Similarity=0.152 Sum_probs=349.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Q 037404 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162 (605)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (605)
...|..-..+.|++++|.+.-...-+.+ +.+......+-..+....+++.....-...++.. ..-..+|+.+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 3456666778889999888766554442 2233333333334555555555544444444432 2245688889999999
Q ss_pred cCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcCC--CCcchHH-HHHHHHHcCCChHHHHHH
Q 037404 163 CGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMPE--RDAVSWN-TILDGYAKAGEMNLAFEL 236 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~ll~~~~~~~~~~~a~~~ 236 (605)
.| ++++|..+++.+.+ ..+..|..+..++...|+.+.|...|.+..+ |+..... .+....-..|++++|...
T Consensus 129 rg--~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RG--QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hc--hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 99 99999999988765 3556899999999999999999999988844 4433322 334455568999999998
Q ss_pred HHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037404 237 FEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310 (605)
Q Consensus 237 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 310 (605)
|-+..+ |. ...|+.|...+-..|+...|+..|++..+-++. .|-.|...|...+.+++|+..|.+.... .|+
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn 284 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPN 284 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCc
Confidence 877664 33 367999999999999999999999998765443 3888999999999999999999988874 555
Q ss_pred -HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 311 -DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 311 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
...+..+...|...|+++.|+..|++..+.... -+..|+.|..++-..|++.+|...|++.. .....+.+.+...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 466778888899999999999999999886532 46789999999999999999999999876 4456788899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 464 (605)
|...|.+++|..+|....+ +.|.. ..++.|...|-+.|++++|+..|+++.+ +.|+ ...|+.+...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999887 46654 5688999999999999999999999964 6776 56899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 465 KEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.|.+.+.++ .+.|. ....+.|...|...|+..+|+..|+++++++|+.|.++..++.++---.+|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999988 66776 55889999999999999999999999999999999999999988766666655
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.5e-20 Score=199.05 Aligned_cols=508 Identities=10% Similarity=0.033 Sum_probs=372.4
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHH--------HhccCChhHHHHHhcccCCCC--cccHHHH-H
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS--------LALCRQMGLAIKVFNDIQDPD--VHLYNTL-I 87 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~--~~~~~~l-l 87 (605)
.+...+...++.+.+..+++++++.. +.+..++..+... |.+.+....+++ .....|+ ..+.... .
T Consensus 113 ~~~~~La~i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~ 189 (987)
T PRK09782 113 RLERSLAAIPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLL 189 (987)
T ss_pred HHHHHHHHhccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHH
Confidence 34444566688888889999988875 4556666666666 776666666666 2223343 4333444 7
Q ss_pred HHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc-cCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 037404 88 RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG-KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (605)
+.|.+.|++++|+..+.++.+.++. +..-...+-.++.. .++ +.+..+++. .+..+..++..+.+.|.+.|
T Consensus 190 rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G-- 261 (987)
T PRK09782 190 QRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRG-- 261 (987)
T ss_pred HHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCC--
Confidence 8999999999999999999998543 34445556566766 355 777777442 33467888999999999999
Q ss_pred ChHHHHHHHhccCC-----CCeeh------------------------------HHHHHHHHHhCCChhHHHHHHhhcCC
Q 037404 167 GVSLAKKLFMSMGE-----RDIVS------------------------------WNSMIAGLVKGGELSEARRLFDEMPE 211 (605)
Q Consensus 167 ~~~~a~~~~~~~~~-----~~~~~------------------------------~~~li~~~~~~g~~~~A~~~~~~~~~ 211 (605)
+.+.|.+++++++. ++..+ .-.++..+.+.++++.+.++...-..
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 99999999999864 11111 11235667777888777766432200
Q ss_pred -------------------------------C-CcchHHHHHHHHHcCCChHHHHHHHHhCCC--C----ChhHHHHHHH
Q 037404 212 -------------------------------R-DAVSWNTILDGYAKAGEMNLAFELFEKIPH--R----NIVSWSTMVW 253 (605)
Q Consensus 212 -------------------------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~----~~~~~~~l~~ 253 (605)
| +......+.-...+.|+.++|..+|+.... + +......++.
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 1 111222223334568899999999988765 2 2234557788
Q ss_pred HHHhcCC---HHHHHHHHh-------------------------hCCCC-----CcccHHHHHHHHHhCCChHHHHHHHH
Q 037404 254 GYSKDGD---MEMAKLLFD-------------------------RMPAK-----TLVPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 254 ~~~~~~~---~~~a~~~~~-------------------------~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
.|.+.+. ..++..+-. ..... +...|..+..++.. +++++|+..+.
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~ 500 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWL 500 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHH
Confidence 8887776 333333311 11111 22336777777776 88999999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHH
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSW 380 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 380 (605)
+.... .|+......+...+...|+++.|...++.+... +|+...+..+..++.+.|+.++|...++.....++...
T Consensus 501 ~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~ 576 (987)
T PRK09782 501 QAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDN 576 (987)
T ss_pred HHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccH
Confidence 88775 467655445555667899999999999987654 33444566778889999999999999988775443333
Q ss_pred H---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 381 N---AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 381 ~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
. .+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|+..++++.. ..+.+...++.+...
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 3 3333444569999999999999984 67788899999999999999999999999987 345567788999999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++..|++..+....+++..+..+++.|.+
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~ 732 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHE 732 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999988 4445 467889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCC
Q 037404 536 VRLQMKKTRAQ 546 (605)
Q Consensus 536 ~~~~~~~~~~~ 546 (605)
-+++....++.
T Consensus 733 ~~~r~~~~~~~ 743 (987)
T PRK09782 733 EVGRRWTFSFD 743 (987)
T ss_pred HHHHHhhcCcc
Confidence 99988876543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=7.7e-22 Score=185.30 Aligned_cols=418 Identities=13% Similarity=0.145 Sum_probs=333.9
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhC
Q 037404 120 FLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKG 196 (605)
Q Consensus 120 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~ 196 (605)
.|..-.-+.|++.+|++.....-.... .+....-.+-..+.... +.+....--..-.. .-..+|..+...+-..
T Consensus 53 ~lah~~yq~gd~~~a~~h~nmv~~~d~-t~~~~llll~ai~~q~~--r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 53 ELAHRLYQGGDYKQAEKHCNMVGQEDP-TNTERLLLLSAIFFQGS--RLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHhccCHHHHHHHHhHhhccCC-Ccccceeeehhhhhccc--chhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 333445577888888887665543321 11122222223343333 44433222222111 2345899999999999
Q ss_pred CChhHHHHHHhhcC--CC-CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhh
Q 037404 197 GELSEARRLFDEMP--ER-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV---SWSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 197 g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
|++++|+..++.++ +| ....|..+..++...|+.+.|...|.+..+-|+. ..+.+....-..|++.+|...+.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 99999999999993 44 4668999999999999999999999888764443 334566667778999999998887
Q ss_pred CCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 271 MPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 271 ~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
..+..+ ..|+.|...+..+|+...|+..|++... +.|+ ...|..+...|...+.++.|...|..+.... +...
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccch
Confidence 654332 3499999999999999999999999987 4565 4678888889999999999999998887654 2245
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMTK--K-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCAC 422 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 422 (605)
.++..+.-.|-.+|.++.|+..|++..+ | -+..|+.|..++-..|+..+|...+.+.... .|+ ..+.+.|...|
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIY 364 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHH
Confidence 6677888889999999999999998773 3 4579999999999999999999999998874 554 46889999999
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 499 (605)
...|.+++|..+|....+ +.|. ...++.|...|..+|++++|+..+++. .+.|+ ...++.+...|...|+.+.|
T Consensus 365 ~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHH
Confidence 999999999999999976 3444 567899999999999999999999998 78888 55999999999999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKP 548 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 548 (605)
.+.+.+++..+|.-.+++..|+.+|...|+..+|+.-|+...+..++.+
T Consensus 442 ~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfp 490 (966)
T KOG4626|consen 442 IQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFP 490 (966)
T ss_pred HHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCc
Confidence 9999999999999999999999999999999999999999999766533
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.4e-19 Score=188.57 Aligned_cols=413 Identities=11% Similarity=-0.021 Sum_probs=271.3
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC---CeehHHHHHHHHHhCC
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGG 197 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g 197 (605)
....+.+.|+++.|...|+..++. .|+...|..+..+|.+.| +++.|.+.++...+. +...|..+..++...|
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~--~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALG--DWEKVVEDTTAALELDPDYSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 334455666666666666666553 344555666666666666 666666666655432 3345666666777777
Q ss_pred ChhHHHHHHhhcCC--C-CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 037404 198 ELSEARRLFDEMPE--R-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK 274 (605)
Q Consensus 198 ~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 274 (605)
++++|+..|..... + +......++..+........+...++.- ..+...+..+...+ ..........-+....+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhhhhccccc
Confidence 77777666654411 1 1111111111111111112223333221 12222222222222 111111111111111111
Q ss_pred Ccc---cHHHHHHHH---HhCCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 275 TLV---PWTIIISGY---AEKGMAKEAARLYDQMEEAG-LKPD-DGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 275 ~~~---~~~~l~~~~---~~~~~~~~a~~~~~~m~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
+.. .+..+...+ ...+++++|+..|++..+.+ ..|+ ...+..+...+...|++++|...++...+... ...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcH
Confidence 111 122222111 23478899999999998764 2343 35566777778889999999999999887642 345
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
..|..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 678888899999999999999998765 4467889999999999999999999999998853 334567778888899
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcC
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA-I-------IWGTLLGACRKHN 494 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g 494 (605)
+.|++++|...++.+.+ ..+.+...++.++..+...|++++|.+.|++. ...|+. . .++..+..+...|
T Consensus 445 ~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~ 522 (615)
T TIGR00990 445 KEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ 522 (615)
T ss_pred HCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence 99999999999999987 44556788999999999999999999999986 333321 1 1122222334469
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++++|..+++++++++|++...+..++.++.+.|++++|++++++..+.
T Consensus 523 ~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 523 DFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.8e-20 Score=185.65 Aligned_cols=311 Identities=12% Similarity=0.051 Sum_probs=215.7
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCch
Q 037404 254 GYSKDGDMEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD---DGTLISILAACAESGLL 327 (605)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~ 327 (605)
.+...|++++|...|+++.+.++. .+..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555666666666665543322 255566666666666666666666665322111 13445556666666677
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--------hhHHHHHHHHHHHcCChHHHHHH
Q 037404 328 GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD--------LVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+.|..++..+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77776666666542 2345566677777777777777777777664221 12345667778889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC
Q 037404 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP 478 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 478 (605)
|+++.+.. +.+...+..+...+.+.|++++|.++++++... .......++..++.+|...|++++|.+.++++ ...|
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99988753 234567777888899999999999999999762 22222456788999999999999999999988 5567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA---TGDWNKVANVRLQMKKTRAQKPSGASSVE 555 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 555 (605)
+...+..++..+.+.|++++|..+++++++..|+++. +..+...+.. .|+.+++..+++++.++++.++|.+....
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~ 359 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRN 359 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCC
Confidence 7777788899999999999999999999999998774 4444444432 56999999999999999988888755443
Q ss_pred eCCeEEEEEeCCC
Q 037404 556 VDNEVHEFSVCDQ 568 (605)
Q Consensus 556 ~~~~~~~~~~~~~ 568 (605)
.+.....|..-|.
T Consensus 360 cg~~~~~~~~~c~ 372 (389)
T PRK11788 360 CGFTARTLYWHCP 372 (389)
T ss_pred CCCCCccceeECc
Confidence 4433334444333
No 17
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=9.3e-19 Score=173.48 Aligned_cols=513 Identities=12% Similarity=0.067 Sum_probs=368.9
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHH---HHhCC---CchHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRA---CVQNS---LNAQAFR 101 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~---~~~~~---~~~~a~~ 101 (605)
+++..+...|...+.-....-+.....+...+.+.|+.+.|+..|+.+.+-|+..-++++.. -.... .+..++.
T Consensus 178 kdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ 257 (1018)
T KOG2002|consen 178 KDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQ 257 (1018)
T ss_pred ccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHH
Confidence 77788888888866654333334444455777888999999999988876555544444421 12222 3344555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC--CcchhhHHHHHHHhcCCCChHHHHHHHhccC
Q 037404 102 VFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG--DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG 179 (605)
Q Consensus 102 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~ 179 (605)
++...-... .-|+...+.|.+.+.-.|++..+..+...+....... -...|--+.++|...| +++.|...|.+..
T Consensus 258 ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G--d~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 258 LLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG--DFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHH
Confidence 555444332 3367778888888888999999999998888765221 2234667888999999 9999999998765
Q ss_pred C--CC--eehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCC----ChHHHHHHHHhCCCC---Ch
Q 037404 180 E--RD--IVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAG----EMNLAFELFEKIPHR---NI 245 (605)
Q Consensus 180 ~--~~--~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~---~~ 245 (605)
. +| +..+--+...+.+.|+++.+...|+.. ..| +..+...+...|+..+ ..+.|..++.+..++ |.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH
Confidence 4 22 345667888999999999999999998 334 4556667777776664 567778887777653 55
Q ss_pred hHHHHHHHHHHhcCCH------HHHHHHHhhCCCC-CcccHHHHHHHHHhCCChHHHHHHHHHHHHc---CCCCCHH---
Q 037404 246 VSWSTMVWGYSKDGDM------EMAKLLFDRMPAK-TLVPWTIIISGYAEKGMAKEAARLYDQMEEA---GLKPDDG--- 312 (605)
Q Consensus 246 ~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~--- 312 (605)
..|..+..+|....-+ ..|.+++...... .+...|.+...+...|++.+|...|+..... ...+|..
T Consensus 415 ~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 415 EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 6777777776655443 3344333332222 3333889999999999999999999998765 1233331
Q ss_pred ---HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 313 ---TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 313 ---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
+--.+.......++.+.|.+.|+.+.+..+ .-+..|-.++-+....+...+|...++... ..++..++.+...
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 223445566677899999999999987642 223344444444445577888888888766 4577888888889
Q ss_pred HHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcc------------cCCHHHHHHHHHHhHHhhCCCCchHHHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTH------------AGFIDKGVQYFYSMERDYGILPQVEHYGC 453 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 453 (605)
+.....+..|.+-|....+.- ..+|.++...|...|.. .+..++|+++|.++.+ ..+.|...-|.
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANG 651 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANG 651 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccc
Confidence 999888888888777666532 23577776666665542 3456788888888877 56678888888
Q ss_pred HHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCC
Q 037404 454 MIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~ 529 (605)
++-.++..|++.+|..+|.+. ....+..+|..++.+|...|++..|+++|+...+.. .+++.++..|++++.+.|+
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~ 731 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK 731 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh
Confidence 999999999999999999988 223456788899999999999999999999999874 4678899999999999999
Q ss_pred hHHHHHHHHHHHhCCCC
Q 037404 530 WNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 530 ~~~A~~~~~~~~~~~~~ 546 (605)
+.+|.+.+..+....+.
T Consensus 732 ~~eak~~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 732 LQEAKEALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHHHHHHHhCCc
Confidence 99999999999886543
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=5.9e-18 Score=175.63 Aligned_cols=324 Identities=9% Similarity=-0.011 Sum_probs=246.4
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhc
Q 037404 185 SWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKD 258 (605)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 258 (605)
-...++..+.+.|++++|+.+++.. ..| +...+..++.+....|+++.|...++++.. .+...+..+...+...
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3455667778888888888888877 223 344555666677778888888888888764 3456788888888899
Q ss_pred CCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 037404 259 GDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (605)
|++++|...+++.... +...+..+...+...|++++|...++.+.... |+.......+..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999988887653 23347788888899999999999998887653 332222222334778899999999988
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCC
Q 037404 336 SINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK----ALGLFSRMKDEGF 408 (605)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~~g~ 408 (605)
.+.+....++......+...+...|++++|...++++. +.+...+..+...|...|++++ |...|++..+.
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-- 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-- 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--
Confidence 88776543444455566778888999999999998765 3456778888889999999885 78999988875
Q ss_pred CC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHH
Q 037404 409 GP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAII-WGT 485 (605)
Q Consensus 409 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~ 485 (605)
.| +...+..+...+...|++++|...++++.. ..+.+...+..+...+.+.|++++|.+.++++ ...|+... +..
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 44 456788888899999999999999999887 33445667778889999999999999999887 44566443 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
+..++...|++++|+..|+++++..|++.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 56778889999999999999999988865
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=6.7e-18 Score=175.23 Aligned_cols=347 Identities=12% Similarity=0.024 Sum_probs=277.5
Q ss_pred HHhCCChhHHHHHHhhcCC------CCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHH
Q 037404 193 LVKGGELSEARRLFDEMPE------RDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEM 263 (605)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~ 263 (605)
+.+..+++.-.-+|....+ .+......++..+.+.|++++|..+++.... .+...+..++.+....|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 3455666665555555521 1333456678888999999999999988753 345667777788888999999
Q ss_pred HHHHHhhCCCCCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc
Q 037404 264 AKLLFDRMPAKTL---VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY 340 (605)
Q Consensus 264 a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 340 (605)
|...++++...++ ..|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++.+...
T Consensus 95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 9999999875433 448888899999999999999999999852 334567778888999999999999999988766
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
...+ ...+..+ ..+...|++++|...++.+.+. +...+..+...+...|++++|+..++++.+.. +.+...+.
T Consensus 174 ~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~ 250 (656)
T PRK15174 174 VPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRR 250 (656)
T ss_pred CCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 5433 3344333 3478899999999999987643 23344555678899999999999999999864 33566778
Q ss_pred HHHHHhcccCCHHH----HHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 037404 417 GVLCACTHAGFIDK----GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGAC 490 (605)
Q Consensus 417 ~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 490 (605)
.+..++...|++++ |...++++.+ ..+.+...+..++..+.+.|++++|...+++. ...|+ ...+..+..++
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l 328 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999986 8999999987 34456778999999999999999999999988 44454 55777888999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.+.|++++|+..++++.+..|.++..+..++.++...|+.++|+..+++..+..+
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 9999999999999999999999887777788999999999999999999988654
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.85 E-value=2.7e-17 Score=171.54 Aligned_cols=418 Identities=12% Similarity=0.005 Sum_probs=294.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Q 037404 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162 (605)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (605)
+......+.+.|+++.|+..|++.++. .|+...|..+..++...|+++.|...++..++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445667888999999999999998864 6777788888888999999999999999998864 2345688889999999
Q ss_pred cCCCChHHHHHHHhccCCCC---eehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHh
Q 037404 163 CGVVGVSLAKKLFMSMGERD---IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEK 239 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 239 (605)
.| ++++|...|......+ ......++..+........+...++.- .++...+..+.. +...........-+..
T Consensus 207 lg--~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 207 LG--KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred cC--CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 99 9999988776543211 111112222111111122233333221 122222222222 2221111111121222
Q ss_pred CCCCCh---hHHHHHHHHH---HhcCCHHHHHHHHhhCCCCC------cccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037404 240 IPHRNI---VSWSTMVWGY---SKDGDMEMAKLLFDRMPAKT------LVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 240 ~~~~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 307 (605)
..+.+. ..+..+...+ ...+++++|.+.|+...+.+ ...|..+...+...|++++|+..|++.++.
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-- 360 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-- 360 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 111111 1111111111 23478999999999876532 223778888889999999999999999885
Q ss_pred CCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHH
Q 037404 308 KPD-DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAM 383 (605)
Q Consensus 308 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 383 (605)
.|+ ...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++.. +.+...+..+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~l 439 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL 439 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHH
Confidence 454 5577888888999999999999999998765 3467888999999999999999999999876 3456778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hH-------HHHHHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VE-------HYGCMI 455 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~ 455 (605)
...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|+..|+..... .|+ .. .++..+
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKAL 515 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHH
Confidence 899999999999999999988752 335678888899999999999999999998762 221 11 122223
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+...|++++|.+++++. ...|+ ...+..++..+.+.|++++|+..++++.++.+...
T Consensus 516 ~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~ 576 (615)
T TIGR00990 516 ALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG 576 (615)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence 3344579999999999986 55555 44788899999999999999999999999876543
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.85 E-value=3.4e-17 Score=162.57 Aligned_cols=517 Identities=12% Similarity=0.044 Sum_probs=379.7
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccC---ChhHHHHHhcccC---CCCcccHHHHHHHHHhC
Q 037404 20 KLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCR---QMGLAIKVFNDIQ---DPDVHLYNTLIRACVQN 93 (605)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~ 93 (605)
..-.+..|++...|+-.|....+.+. -++.++..|.-.-.... .+..+..++...- ..|+...+.|...|...
T Consensus 205 ig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK 283 (1018)
T KOG2002|consen 205 IGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFK 283 (1018)
T ss_pred hhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhc
Confidence 34467788999999999999887652 34444444433333333 3455666665443 46888899999999999
Q ss_pred CCchHHHHHHHHHHhCCCC--CCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHH
Q 037404 94 SLNAQAFRVFLDMQEKGVF--TDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLA 171 (605)
Q Consensus 94 ~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a 171 (605)
|+++.++.+...+...... .-...|-.+.+++-..|+++.|..+|.+..+.....-...+-.|.++|.+.| +.+.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~--dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRG--DLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhc--hHHHH
Confidence 9999999999998875311 1234578888999999999999999988877543222344567899999999 99999
Q ss_pred HHHHhccCC--C-CeehHHHHHHHHHhCC----ChhHHHHHHhhcCCC---CcchHHHHHHHHHcCCChHHHHHHHHh--
Q 037404 172 KKLFMSMGE--R-DIVSWNSMIAGLVKGG----ELSEARRLFDEMPER---DAVSWNTILDGYAKAGEMNLAFELFEK-- 239 (605)
Q Consensus 172 ~~~~~~~~~--~-~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~-- 239 (605)
...|+.+.. | +..+...|...|...+ ..+.|..++.+..++ |...|..+...+-...- ..++..|..
T Consensus 362 ~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 362 KFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHHHHHHHHHH
Confidence 999998865 3 4456666666676664 457777777777443 45566666555544333 222444432
Q ss_pred ------CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-------Cc------ccHHHHHHHHHhCCChHHHHHHHH
Q 037404 240 ------IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-------TL------VPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 240 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
+....+...|.+...+...|++.+|...|...... +. ..-..+...+-..++++.|.+.|+
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk 520 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYK 520 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 23467788999999999999999999999876432 11 112235666677889999999999
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-----C
Q 037404 301 QMEEAGLKPDDG-TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-----K 374 (605)
Q Consensus 301 ~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~ 374 (605)
.+.+. .|.-+ .|..++......+...+|...++.+...+ ..++..++.+...+....++..|.+-|..+. .
T Consensus 521 ~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 521 SILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred HHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 99986 45544 34444434445677888999988887755 4467778888889999888888888665443 2
Q ss_pred CChhHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 375 KDLVSWNAMLYGLAM------------HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 375 ~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
+|..+.-+|...|.+ .+..++|+.+|.+..+.. +-|...-+.+..+++..|++.+|..+|....+.
T Consensus 598 ~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa- 675 (1018)
T KOG2002|consen 598 TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA- 675 (1018)
T ss_pred CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH-
Confidence 355555555554432 345678999999888753 347778888888999999999999999999883
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
......+|..++.+|..+|++-.|+++|+.. ....+..+...|.+++.+.|.+.+|.+.+..+....|.++.+.+
T Consensus 676 -~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 676 -TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred -HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 3345567889999999999999999999887 23457788999999999999999999999999999999998888
Q ss_pred HHHHHHHhcC-------------------ChHHHHHHHHHHHhCCCC
Q 037404 519 MLSNIFAATG-------------------DWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 519 ~l~~~~~~~g-------------------~~~~A~~~~~~~~~~~~~ 546 (605)
.++-+..+.+ ..++|.++|..+...+-+
T Consensus 755 N~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 755 NLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 7776654433 477788888888876544
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.1e-17 Score=173.22 Aligned_cols=399 Identities=10% Similarity=-0.018 Sum_probs=202.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 037404 86 LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165 (605)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (605)
.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. +.+...+..+...+...|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g- 97 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG- 97 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC-
Confidence 3445555677777777776665421 2233345666666666677777777666666542 223344455555666666
Q ss_pred CChHHHHHHHhccCC--C-CeehHHHHHHHHHhCCChhHHHHHHhhc--CCCC-cchHHHHHHHHHcCCChHHHHHHHHh
Q 037404 166 VGVSLAKKLFMSMGE--R-DIVSWNSMIAGLVKGGELSEARRLFDEM--PERD-AVSWNTILDGYAKAGEMNLAFELFEK 239 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 239 (605)
+.++|...+++..+ | +.. +..+..++...|+.++|+..++++ ..|+ ...+..+..++...+..+.|.+.++.
T Consensus 98 -~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 98 -QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred -CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 66666666655533 2 233 555555555666666666666555 2232 22233344444445555555555544
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHH-----hCCCh---HHHHHHHHHHHHc-CCCCC
Q 037404 240 IPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYA-----EKGMA---KEAARLYDQMEEA-GLKPD 310 (605)
Q Consensus 240 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~---~~a~~~~~~m~~~-~~~p~ 310 (605)
... ++.....+ +. .+...++.... ..+++ ++|++.++.+.+. ...|+
T Consensus 176 ~~~-~p~~~~~l--------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 176 ANL-TPAEKRDL--------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred CCC-CHHHHHHH--------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 433 11100000 00 00111111111 11222 5666777766643 11222
Q ss_pred HH-HHH----HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-------hh
Q 037404 311 DG-TLI----SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD-------LV 378 (605)
Q Consensus 311 ~~-~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~ 378 (605)
.. .+. ..+..+...|++++|...|+.+.+.+.+........+..+|...|++++|+..|+++...+ ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 21 111 1123334556667777777766655422111122224556666677777777666654221 12
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCCH---HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGF-----------GPDK---YTFVGVLCACTHAGFIDKGVQYFYSMERDYGI 444 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 444 (605)
.+..+..++...|++++|..+++++..... .|+. ..+..+...+...|+.++|++.++++.. ..
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~ 389 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NA 389 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 344455566667777777777776665320 1221 1233444455566666666666666655 33
Q ss_pred CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.+...+..++..+...|++++|++.++++ ...|+ ...+...+..+...|++++|+..++++++..|+++.
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 444555666666666666666666666655 33344 334444455555666666666666666666666653
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=1.9e-17 Score=175.66 Aligned_cols=390 Identities=8% Similarity=-0.019 Sum_probs=237.4
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHH
Q 037404 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLV 194 (605)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~ 194 (605)
..-.+......|+.++|..++....... +.+...+..+...+...| ++++|..++++..+ .+...+..++..+.
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK--QWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3344444555555555555555554311 222233455555555555 55555555555321 22334444444555
Q ss_pred hCCChhHHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037404 195 KGGELSEARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272 (605)
Q Consensus 195 ~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 272 (605)
..|++++|+..+++. ..|+ +.. +..+..++...|+.++|+..++++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~------------------------------~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPD------------------------------KAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCC------------------------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 555555555555554 1221 222 4444444444444555544444443
Q ss_pred CCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH------HHHHHHHHHH-----HccCch---HHHHHHHH
Q 037404 273 AKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD------GTLISILAAC-----AESGLL---GLGMKVHA 335 (605)
Q Consensus 273 ~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~-----~~~~~~---~~a~~~~~ 335 (605)
+..+.. +..+...+...+..++|+..++.... .|+. ......+... ...+++ +.|.+.++
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 322211 33344444444555555554443332 1111 0011111111 112233 67777888
Q ss_pred HHHHc-CCCCChh--HHHH---HHHHHHhcCChHHHHHHHhcCCCCC---hh-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037404 336 SINKY-RFKCNTN--VCNA---LVDMYAKCGSLDNAMSVFNGMTKKD---LV-SWNAMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 336 ~~~~~-~~~~~~~--~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
.+.+. ...|+.. .... .+..+...|++++|+..|+.+...+ +. ....+...|...|++++|+.+|+++.+
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 87754 2222221 1111 1334567799999999999988542 21 222357789999999999999999886
Q ss_pred CCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC----------CCCc---hHHHHHHHHHhhhcCCHHHHHH
Q 037404 406 EGFGP---DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG----------ILPQ---VEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 406 ~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
..... .......+..++...|++++|..+++.+..... -.|+ ...+..++..+...|++++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 43111 124456667788999999999999999977210 1122 2345677888999999999999
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 470 LVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 470 ~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+++++ . .+.+...+..++..+...|++++|++.++++++.+|+++..+..++..+.+.|++++|+.+++++.+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99998 3 334567888899999999999999999999999999999999999999999999999999999999854
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=3.6e-18 Score=169.28 Aligned_cols=259 Identities=13% Similarity=0.120 Sum_probs=182.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCc-------ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTL-------VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
++..+...+...|++++|..+++.+..... ..+..++..|...|++++|..+|+++.+.. +++..++..++.
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 149 (389)
T PRK11788 71 LHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLE 149 (389)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence 344444444445555555554444432211 124555666666666666666666666542 334555666666
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCC
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCN----TNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 392 (605)
.+...|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|+
T Consensus 150 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 229 (389)
T PRK11788 150 IYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD 229 (389)
T ss_pred HHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC
Confidence 66666777777666666665443221 12345667778888899999888887652 345677788889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+++|.++++++.+.+......++..+..+|...|++++|...++++.+. .|+...+..++..+.+.|++++|.++++
T Consensus 230 ~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 230 YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999999999987532222456788889999999999999999998772 4666777889999999999999999998
Q ss_pred hC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhh
Q 037404 473 SM-PVEPNAIIWGTLLGACRK---HNAVELAEEVLDCLIRL 509 (605)
Q Consensus 473 ~~-~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 509 (605)
++ ...|+...+..++..+.. .|+.+++...++++++.
T Consensus 307 ~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred HHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 77 667998888888877664 55888999999888864
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=9.5e-16 Score=159.48 Aligned_cols=440 Identities=12% Similarity=0.039 Sum_probs=297.2
Q ss_pred HHHHHhccCChhHHHHHhcccCC--CCcc-cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH---HHHhhcc
Q 037404 55 LISSLALCRQMGLAIKVFNDIQD--PDVH-LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL---LKACNGK 128 (605)
Q Consensus 55 l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~ 128 (605)
.+-...+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 34445688999999999988874 3321 12267777888899999999888887 3333333222 3457777
Q ss_pred CCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCee--hHHHHHHHHHhCCChhHHHHHH
Q 037404 129 NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV--SWNSMIAGLVKGGELSEARRLF 206 (605)
Q Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~ 206 (605)
|+++.|.++++.+++..+. +...+..++..|...+ +.++|.+.++++...+.. .+..++..+...++..+|++.+
T Consensus 116 gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~--q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAG--RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred CCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcC--CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 8899999999988886533 3566667778888888 888888888887764433 3333333333345555588888
Q ss_pred hhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHH
Q 037404 207 DEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIII 283 (605)
Q Consensus 207 ~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 283 (605)
+++ ..| +...+.....++.+.|-...|.++...-.. ..+-..... =+.+.|.+..+....++.. - -
T Consensus 193 ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~-----l~~~~~a~~vr~a~~~~~~-~---~ 261 (822)
T PRK14574 193 SEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQ-----LERDAAAEQVRMAVLPTRS-E---T 261 (822)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHH-----HHHHHHHHHHhhccccccc-c---h
Confidence 877 344 344556666777777777777777665331 111100000 0112222222111100000 0 0
Q ss_pred HHHHhCCChHHHHHHHHHHHHc-CCCCCH-H----HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 037404 284 SGYAEKGMAKEAARLYDQMEEA-GLKPDD-G----TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA 357 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~-~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (605)
. +.--.+.|+.-++.+... +..|.. . ...-.+.++...|+...+++.++.+...+.+....+-.++.++|.
T Consensus 262 ~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 262 E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 0 001235566666665542 112322 1 223456677888999999999999998887767778889999999
Q ss_pred hcCChHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC--HH-H
Q 037404 358 KCGSLDNAMSVFNGMTKK---------DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-----------GPD--KY-T 414 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~--~~-~ 414 (605)
..+++++|+.+|..+... +......|..+|...+++++|..+++++.+.-. .|| -. .
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 999999999999987532 223356788899999999999999999987311 122 22 2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRK 492 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 492 (605)
+..++..+...|+..+|++.++++.. .-+-|......+...+...|.+.+|++.++.+ ...|+ ..+....+.++..
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHh
Confidence 44456778899999999999999977 56678899999999999999999999999876 45565 4466677888889
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchH
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
.|++++|..+.+.+.+..|+++.+-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999998543
No 26
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=8.9e-17 Score=146.14 Aligned_cols=437 Identities=14% Similarity=0.101 Sum_probs=310.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHH-HHhhccCCHHHHHHHHHHHHHhCCCCCcch----hhHHHHHH
Q 037404 86 LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL-KACNGKNWFHLVQMIHALIYKCGYFGDIFV----PNSLIDSY 160 (605)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~ 160 (605)
|.+.|..+....+|+..|+-..+....|+.-.+..-+ ..+.+.+.+..|.++++..++.-+..+..+ .+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 4456777778899999999999888888887655444 347788899999999999887654444333 33444457
Q ss_pred HhcCCCChHHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHhhcCC----------------CCcchHHHH--
Q 037404 161 SKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEMPE----------------RDAVSWNTI-- 220 (605)
Q Consensus 161 ~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~l-- 220 (605)
.+.| .++.|...|+...+ |+..+-..|+-++..-|+-++..+.|.+|+. |+....+..
T Consensus 287 iq~g--qy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~ 364 (840)
T KOG2003|consen 287 IQAG--QYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK 364 (840)
T ss_pred Eecc--cchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence 7888 99999999988765 6665544555566667889999999988821 222222221
Q ss_pred ---HHHHHcCCC--hHHHHHHHHhCC----CCChh-------------HHH--------HHHHHHHhcCCHHHHHHHHhh
Q 037404 221 ---LDGYAKAGE--MNLAFELFEKIP----HRNIV-------------SWS--------TMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 221 ---l~~~~~~~~--~~~a~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~~~~~~~a~~~~~~ 270 (605)
++-.-+.+. .++++-.--++. .|+.. .+. .-..-|.+.|+++.|.++++-
T Consensus 365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv 444 (840)
T KOG2003|consen 365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV 444 (840)
T ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence 222222211 222222111222 22211 011 112347789999999999888
Q ss_pred CCCCCccc----HHHHHHHH-H-hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC
Q 037404 271 MPAKTLVP----WTIIISGY-A-EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC 344 (605)
Q Consensus 271 ~~~~~~~~----~~~l~~~~-~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (605)
..+.+..+ -+.|-..+ . .-.++..|..+-+..+... .-+......-.......|++++|...|++.....-..
T Consensus 445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc 523 (840)
T KOG2003|consen 445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC 523 (840)
T ss_pred HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH
Confidence 77655444 22222222 2 2346677777666655432 2333333333344456789999999999998766444
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
....|+ +.-.+-..|++++|+++|-++. ..+......+...|-...+..+|++++.+.... ++.|+..+..|...
T Consensus 524 ~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 444444 3445778899999999998765 557778888899999999999999999887664 45577888899999
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGAC-RKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A 499 (605)
|-+.|+..+|.+.+-.-.+ -++-+..+...|...|....-+++|+.+|++. -+.|+..-|..++..| .+.|++++|
T Consensus 602 ydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred hhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 9999999999998877654 56678999999999999999999999999998 6789999999887666 567999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
..+|+...+..|.+...+..|.++....|.
T Consensus 680 ~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 680 FDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999999888874
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=4.3e-15 Score=154.66 Aligned_cols=193 Identities=11% Similarity=0.050 Sum_probs=158.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHh
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-----FGPDKYTFVGVLCAC 422 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~ 422 (605)
.+-++...|+..++++.|+.+... ...+-..+.++|...+++++|+.+++++.... ..++......|.-++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 355677889999999999999833 23456678899999999999999999987643 122334457888999
Q ss_pred cccCCHHHHHHHHHHhHHhhC----------CCCc---hHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYG----------ILPQ---VEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLL 487 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 487 (605)
...+++++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ .-+-|......+.
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999999987211 0122 233455678889999999999999998 3345677888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+...|.+.+|++.++.+...+|++..+....+.++...|+|++|..+.+.+.+..
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999998888754
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.79 E-value=7.5e-14 Score=133.03 Aligned_cols=499 Identities=11% Similarity=0.056 Sum_probs=387.9
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 037404 34 KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG 110 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 110 (605)
.++++..+++ ++.++..|...+. ..+.++|+-++....+ .++..| -++++..-++.|..++++.++.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-
Confidence 5566655553 3555555555444 3456668888776653 333333 4566677788899999998876
Q ss_pred CCCCcccHHHHHHHhhccCCHHHHHHHHHHHH----HhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC------
Q 037404 111 VFTDNFTYPFLLKACNGKNWFHLVQMIHALIY----KCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE------ 180 (605)
Q Consensus 111 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~------ 180 (605)
++-+...+.+....--.+|+.+....+...-+ ..|+..+..-|..=...+-..| ..-.+..+...+..
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag--sv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG--SVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC--ChhhHHHHHHHHHhhccccc
Confidence 77788888777777778888888877776543 4566666666666666666666 55555555544432
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCC--C-CcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHH
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPE--R-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWG 254 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~ 254 (605)
.-..+|..-...|.+.+.++-|..+|....+ | +...|......--..|..+.-..+|++... .....|-.....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake 593 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKE 593 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHH
Confidence 1234788888899999999999999988833 3 455666666666678888888888888764 344567777788
Q ss_pred HHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 037404 255 YSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331 (605)
Q Consensus 255 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (605)
+-..|++..|..++....+.++.+ |-.-+.....+..++.|..+|.+.... .|+...|.--+..-.-.++.++|.
T Consensus 594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 888999999999998876654444 888888889999999999999998874 677777777777777788999999
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037404 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 408 (605)
+++++..+.- +.-...|-.+.+.+-+.++++.|.+.|..-. +..+..|-.+...--+.|+.-+|..++++.+-.+
T Consensus 672 rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN- 749 (913)
T KOG0495|consen 672 RLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN- 749 (913)
T ss_pred HHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-
Confidence 9999888754 3345678888999999999999999998655 4466788888888889999999999999988765
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 488 (605)
+-+...|...++.-.+.|+.+.|..++.++.+ .++.+...|..-|.+..+.++-.++...+++.. .|+.++..+..
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHH
Confidence 44677899999999999999999999999998 577788889989999888888778877777764 57778888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEE
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSV 554 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 554 (605)
.+....++++|++.|.++++.+|++.++|..+-..+.+.|.-++-.+++.+..... |.-|..|.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999888754 44555554
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=7.6e-14 Score=138.27 Aligned_cols=521 Identities=12% Similarity=0.096 Sum_probs=348.9
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCC
Q 037404 18 EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNS 94 (605)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~ 94 (605)
...+..+.+.|+.++|..++..+++.. +.+...|..|...|-..|+.+++...+--+. +.|..-|-.+..-..+.|
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 345667777899999999999999986 6888999999999999999999998876543 567788999999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhH----HHHHHHhcCCCChHH
Q 037404 95 LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS----LIDSYSKCGVVGVSL 170 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~~~ 170 (605)
++++|.-+|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-... .+..+...+ +-+.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~--~~e~ 298 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN--ERER 298 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh--HHHH
Confidence 9999999999999873 33544455556668899999999999999998765333333333 345566667 6688
Q ss_pred HHHHHhccCC-----CCeehHHHHHHHHHhCCChhHHHHHHhhcCC----CC----------------------cchHH-
Q 037404 171 AKKLFMSMGE-----RDIVSWNSMIAGLVKGGELSEARRLFDEMPE----RD----------------------AVSWN- 218 (605)
Q Consensus 171 a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------------------~~~~~- 218 (605)
|.+.++.... .+...++.++..+.+...++.|......+.. +| ...|.
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 8888876653 3456789999999999999999888776622 11 11111
Q ss_pred ---HHHHHHHcCCChHHHHHHHHhCC------CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcccHHHHHHH
Q 037404 219 ---TILDGYAKAGEMNLAFELFEKIP------HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TLVPWTIIISG 285 (605)
Q Consensus 219 ---~ll~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~l~~~ 285 (605)
.++-++......+....+..... ..+...|..+..+|...|++..|.++|..+... +...|-.+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 11222333333333333332222 234567888889999999999999999888643 33348888999
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHH
Q 037404 286 YAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASIN--------KYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~ 356 (605)
|...|.+++|...|...+.. .|+ ...-.++...+.+.|+.++|.+.+..+. ..++.|+..+.......+
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999998875 344 3445567777888999999998888853 233455566666666677
Q ss_pred HhcCChHHHHHHHhcCCC----------------------------------------C---------------------
Q 037404 357 AKCGSLDNAMSVFNGMTK----------------------------------------K--------------------- 375 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~~----------------------------------------~--------------------- 375 (605)
.+.|+.++=..+-..|.. +
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 777776654332221110 0
Q ss_pred ----Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHH--HH-HHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 376 ----DL----VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF--GPDKY--TF-VGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 376 ----~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~--~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
.. ..+.-++.++++.+++++|+.+...+..... .++.. .+ ...+.++...+++..|...++.+....
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 00 1234566778889999999999988876532 12221 22 334566778899999999999888743
Q ss_pred CCCCc---hHHHHHHHHHhh-----------------------------------hcCCHHHHHHHHHhC-CCCCCHHHH
Q 037404 443 GILPQ---VEHYGCMIDLLG-----------------------------------RSGRLKEALRLVQSM-PVEPNAIIW 483 (605)
Q Consensus 443 ~~~~~---~~~~~~l~~~~~-----------------------------------~~g~~~~A~~~~~~~-~~~p~~~~~ 483 (605)
+...+ ...|+.....+. .++.+.-|+..+-++ ...|+....
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~ 776 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLI 776 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHH
Confidence 33322 223442222222 223344555544333 223442222
Q ss_pred HHH-HHHHH----------hcCCHHHHHHHHHHHHhhcCC--CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 484 GTL-LGACR----------KHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 484 ~~l-~~~~~----------~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.+ +.++. ++-..-++..++.+..++... .-.+.+.+|++|-..|-..-|+.+|+++.+..
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~ 850 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS 850 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC
Confidence 221 12211 111244455556555555422 44678999999999999999999999999864
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=8.6e-14 Score=126.11 Aligned_cols=307 Identities=11% Similarity=0.148 Sum_probs=200.5
Q ss_pred HhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHh--ccCChhHH------------------------HHHhcccCC
Q 037404 24 LHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLA--LCRQMGLA------------------------IKVFNDIQD 77 (605)
Q Consensus 24 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A------------------------~~~~~~~~~ 77 (605)
+-..+.+.++.-+|..|.+.|++.++.+...|+..-+ ...++.-| -+++.+..+
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 3456888889999999999999988888777766433 22222111 113333334
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHH
Q 037404 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLI 157 (605)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 157 (605)
.+..+|..||.++|+-...++|.++|++......+.+..+||.+|.+-+-.. .++++.+|....+.||..|+|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence 5667888999999998888999999999888888888889999888743222 277888888888899999999999
Q ss_pred HHHHhcCCCChHHHHHH----HhccC----CCCeehHHHHHHHHHhCCChhH-HHHHHhhc--------CC---C-Ccch
Q 037404 158 DSYSKCGVVGVSLAKKL----FMSMG----ERDIVSWNSMIAGLVKGGELSE-ARRLFDEM--------PE---R-DAVS 216 (605)
Q Consensus 158 ~~~~~~g~~~~~~a~~~----~~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~--------~~---~-~~~~ 216 (605)
++.++.| +++.|.+. +.+|+ +|+..+|..+|..+.+.++..+ |..++.++ .+ | |...
T Consensus 281 ~c~akfg--~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 281 SCAAKFG--KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999988 77665444 34443 3666777777777777766543 22333222 11 1 2333
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChH
Q 037404 217 WNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAK 293 (605)
Q Consensus 217 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~ 293 (605)
|...+..|.+..+.+.|.++..-....+ +++.. .++.. -|..+....++....+
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~---------------N~~~i--------g~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGD---------------NWKFI--------GPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCC---------------chhhc--------ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544432221100 00000 00111 1455666777777788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 294 EAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 294 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
.....|+.|.-.-.-|+..+...++++..-.+.++-..+++..++..|.........-++..+++.
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 888888888877777888888888888888888888888888888877655555444444444443
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.71 E-value=2.7e-12 Score=122.66 Aligned_cols=482 Identities=14% Similarity=0.087 Sum_probs=375.7
Q ss_pred hhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHH
Q 037404 25 HKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFR 101 (605)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~ 101 (605)
.......+|+-++...++. .+.+... .-+|++..-++.|..+++... +.+...|-+-...--.+|+.+...+
T Consensus 387 VelE~~~darilL~rAvec-cp~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 387 VELEEPEDARILLERAVEC-CPQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred HhccChHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3334445555555555543 2233333 344566667888888887765 5677888776666677888888877
Q ss_pred HHHH----HHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCC--CcchhhHHHHHHHhcCCCChHHHHHHH
Q 037404 102 VFLD----MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFG--DIFVPNSLIDSYSKCGVVGVSLAKKLF 175 (605)
Q Consensus 102 ~~~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~~~a~~~~ 175 (605)
+.++ +...|+..+...+..=...|-..|..-.+..+....+..|++. ...+|..-.+.|.+.+ .++-|+.+|
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~--~~~carAVy 539 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRP--AIECARAVY 539 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcc--hHHHHHHHH
Confidence 7665 4567888888888888888989999999999999999888753 3458888889999999 999999998
Q ss_pred hccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC---CCCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChh
Q 037404 176 MSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIV 246 (605)
Q Consensus 176 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~ 246 (605)
....+ .+...|...+..--..|..++-..+|++.+ +.....|......+-..|+...|..++....+ .+..
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee 619 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE 619 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH
Confidence 87654 356678888877778899999999999983 33444555556777788999999999887764 3557
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV--PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD-GTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~ 323 (605)
.|..-+..-..+.+++.|..+|.+....... .|..-+....-.++.++|++++++.++. -|+- ..|..+...+.+
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence 8889999999999999999999998754433 3766666666789999999999999884 5664 455666677888
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 400 (605)
.++++.|...|..-.+. ++..+..|-.|...--+.|.+-.|..++++.. +.+...|-..|+.-.+.|+.+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 89999998887664443 34567788888888889999999999999766 447789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN 479 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 479 (605)
.+..+. ++.+...|..-|...-+.++-......+++. ..|+.+...+...|....++++|.+.|.+. ...||
T Consensus 777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 988875 4556677777777777777766666555544 457778888999999999999999999988 56666
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 480 -AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 480 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
..+|.-+...+.++|.-+.-.+++.+...-.|.+...|.....-
T Consensus 850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKD 894 (913)
T ss_pred cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhh
Confidence 55888889999999999999999999999999998888776644
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.6e-14 Score=130.30 Aligned_cols=421 Identities=13% Similarity=0.109 Sum_probs=296.4
Q ss_pred cHHHHHHH---hhccCCHHHHHHHHHHHHHhCCCCCcchh-hHHHHHHHhcCCCChHHHHHHHhccCC--C--Ce----e
Q 037404 117 TYPFLLKA---CNGKNWFHLVQMIHALIYKCGYFGDIFVP-NSLIDSYSKCGVVGVSLAKKLFMSMGE--R--DI----V 184 (605)
Q Consensus 117 ~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~~~a~~~~~~~~~--~--~~----~ 184 (605)
||..|... |.......+|...++.+++...-|+.... ..+...+.+.. .+..|.+.++.... | +. .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr--~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKR--EFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehh--hHHHHHHHHHHHHhhccccchhhHHH
Confidence 56555543 66677788999999999998887776543 34566677777 89999988865432 2 22 2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC----------------CChh
Q 037404 185 SWNSMIAGLVKGGELSEARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH----------------RNIV 246 (605)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----------------~~~~ 246 (605)
..+.+.-.+.+.|+++.|+..|+.. ..|+-.+-..++-++...|+.++..+.|.++.. |+..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3444445678999999999999988 557766666667777788999999999988763 1222
Q ss_pred HHH-----HHHHHHHhcCC--HHHHHHHHhhCCCCCccc-------HHH------------------HHHHHHhCCChHH
Q 037404 247 SWS-----TMVWGYSKDGD--MEMAKLLFDRMPAKTLVP-------WTI------------------IISGYAEKGMAKE 294 (605)
Q Consensus 247 ~~~-----~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~-------~~~------------------l~~~~~~~~~~~~ 294 (605)
..+ ..+.-.-+.+. -++++-.--++..+-+.+ |.. -...+.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222 12222222221 122222222222222211 211 1235778999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--HHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 295 AARLYDQMEEAGLKPDDGTLISI--LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 295 a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
|+++++-+.+..-+.-...-+.+ +.......++..|.++-+...... .-+......-.+.....|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999988776533333333322 222223446777777766655432 223333333344455679999999999999
Q ss_pred CCCChhHHHHHHH---HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH
Q 037404 373 TKKDLVSWNAMLY---GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 373 ~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
...|..+-.++.. .+-..|+.++|++.|-++... +..+...+..+...|....+..+|++++..... -++.|+.
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 9887765555543 467789999999999987753 344667778888899999999999999988865 5666888
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+...|...|-+.|+-..|.+..-.- . .+.+..+..-|..-|....-+++++.+|+++.-+.|........++.++.+.
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 9999999999999999999976554 3 3456778887888888888999999999999999999888888888999999
Q ss_pred CChHHHHHHHHHHHhC
Q 037404 528 GDWNKVANVRLQMKKT 543 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~ 543 (605)
|++..|..+|+....+
T Consensus 674 gnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999998875
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.4e-12 Score=129.45 Aligned_cols=482 Identities=13% Similarity=0.037 Sum_probs=306.5
Q ss_pred HHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHH
Q 037404 56 ISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFH 132 (605)
Q Consensus 56 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 132 (605)
.+.+...|+.++|.+++.++. +.+...|.+|...|-+.|+.+.++..+-..-.. .+-|...|..+-......|+++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHH
Confidence 333444599999999999987 356778999999999999999999877665544 3336678888888889999999
Q ss_pred HHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCe----e----hHHHHHHHHHhCCChhHHHH
Q 037404 133 LVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDI----V----SWNSMIAGLVKGGELSEARR 204 (605)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~ 204 (605)
.|.-.+..+++.. +++...+-.-...|-+.| +...|..-|.++.+.++ . .--..+..+...++-+.|.+
T Consensus 225 qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQAN-PSNWELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhcC-CcchHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999875 334555566778899999 99999988888765332 1 22334567778888899999
Q ss_pred HHhhcCC-----CCcchHHHHHHHHHcCCChHHHHHHHHhCCC-------------------------------CChhHH
Q 037404 205 LFDEMPE-----RDAVSWNTILDGYAKAGEMNLAFELFEKIPH-------------------------------RNIVSW 248 (605)
Q Consensus 205 ~~~~~~~-----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------------------------------~~~~~~ 248 (605)
.++.... -+...++.++..+.+...++.+......+.. .+..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 9888733 2445678888888888888888877544332 12222
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC------cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKT------LVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA 322 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 322 (605)
..++-++......+....+...+...+ ...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 122333333333333333333333333 22278889999999999999999999998755556778899999999
Q ss_pred ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh------------hHHHHHHHHHHHc
Q 037404 323 ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL------------VSWNAMLYGLAMH 390 (605)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~l~~~~~~~ 390 (605)
..|..+.|.+.|..+.... +.+...--.|...+.+.|+.++|.+++..+..||. .........+.+.
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998865 33566777888899999999999999999876652 1222234456667
Q ss_pred CChHHHHHHHHHHHHCC-----CCC-----------------CHHHHHHHHHHhcccCCHHHHHHHHHHh-----HHhhC
Q 037404 391 GQGEKALGLFSRMKDEG-----FGP-----------------DKYTFVGVLCACTHAGFIDKGVQYFYSM-----ERDYG 443 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g-----~~p-----------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~-----~~~~~ 443 (605)
|+.++-+.+...|...+ +-| ...+...++.+-.+.++......-...- ....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 77666554444433211 001 1111222222222222221111111110 00012
Q ss_pred CCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCCCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHHhh----
Q 037404 444 ILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM-P---VEPNAI---IW-GTLLGACRKHNAVELAEEVLDCLIRL---- 509 (605)
Q Consensus 444 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~---- 509 (605)
+.-+ -..+.-++..+++.+++++|+.+...+ . ...+.. .+ ...+.++...+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 2211 134455666677777777777776655 1 111111 22 22334455667777777777666665
Q ss_pred -cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 -KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 -~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|--...|+.....+.+.|+-.--..++......
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~ 734 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK 734 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3433444444444445555544444444444433
No 34
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.2e-16 Score=149.76 Aligned_cols=257 Identities=14% Similarity=0.113 Sum_probs=112.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL-ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
+...+.+.|++++|++++++......+|+...| ..+...+...++.+.|...++.+...+.. ++..+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355666777777777777555443223444333 33444556677788888888877765533 55566777776 6888
Q ss_pred ChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 361 SLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 361 ~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
++++|.+++.... .+++..+..++..+...++++++..+++++.... .+.+...|..+...+.+.|+.++|...+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988887664 3456677788888999999999999999977533 345667788888899999999999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.+ ..+.|......++..+...|+.+++.++++.. ..+.|+..+..+..++...|++++|...++++.+.+|+|+.
T Consensus 172 al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 987 33446778889999999999999988888776 22455667888999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+...+++++...|+.++|..++.++.+
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999988765
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=8.2e-12 Score=113.54 Aligned_cols=424 Identities=15% Similarity=0.116 Sum_probs=238.4
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh--ccCCHH-HHHHHHHHHHHhCCCCCcchhhH
Q 037404 79 DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN--GKNWFH-LVQMIHALIYKCGYFGDIFVPNS 155 (605)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~ 155 (605)
.+++=|.|+. +..+|..+++.-+|+.|.+.|++.+...-..|++..+ ...+.- .-++-|-.|.+.|-. +..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--
Confidence 3445666665 4567889999999999999998877766556655422 222211 112233333333321 22222
Q ss_pred HHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc----CCCCcchHHHHHHHHHcCCChH
Q 037404 156 LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM----PERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 156 l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
+.| +. |. ++-+...+...++..+|.++++--..+.|.+++++. .+-+..+||.+|.+-+-..+-+
T Consensus 191 ------K~G--~v--Ad-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~ 259 (625)
T KOG4422|consen 191 ------KSG--AV--AD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKK 259 (625)
T ss_pred ------ccc--cH--HH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHH
Confidence 223 32 33 555555566778888999999888888898888887 3456778888876654433333
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 037404 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311 (605)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 311 (605)
..-++...-..||..|+|+++.+..+.|+++.|.+. |++++.+|.+.|+.|.-
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsL 312 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSL 312 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcch
Confidence 333333333458888888888888888877665432 44445555555555555
Q ss_pred HHHHHHHHHHHccCchHH-HHHHHHHHHH----cCC----CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--------
Q 037404 312 GTLISILAACAESGLLGL-GMKVHASINK----YRF----KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------- 374 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------- 374 (605)
.+|..++..+.+.++..+ +..++.++.. ..+ +.+...|...+..|.+..+.+-|.++-.-+..
T Consensus 313 sSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig 392 (625)
T KOG4422|consen 313 SSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIG 392 (625)
T ss_pred hhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcC
Confidence 555555555555554432 2222222221 111 11233344445555555555555544432221
Q ss_pred C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 375 K---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 375 ~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
+ ...-|..+....++....+.-+.+|+.|.-.-+-|+..+...++++....|.++-.-++|..++. +|..-+....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~ 471 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLR 471 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHH
Confidence 1 11234445555566666666666666666555556666666666666666666666666666555 4444333333
Q ss_pred HHHHHHhhhcC-CH-------------HHHHHHH-------HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 452 GCMIDLLGRSG-RL-------------KEALRLV-------QSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 452 ~~l~~~~~~~g-~~-------------~~A~~~~-------~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.-+...+++.. +. +-|..++ .++ ...-....++.++-.+.+.|..++|.+++....+.
T Consensus 472 eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~ 551 (625)
T KOG4422|consen 472 EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRK 551 (625)
T ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhc
Confidence 33333333332 10 0011111 112 23345666777777888999999999999888664
Q ss_pred c---CCCCc--hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 510 K---GSDPG--NYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 510 ~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
. |..|. +...+.+.-.+...-..|...++-|...+.
T Consensus 552 ~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 552 HNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3 44442 223444555666778889999998876543
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=5.4e-13 Score=123.17 Aligned_cols=215 Identities=15% Similarity=0.148 Sum_probs=174.8
Q ss_pred HccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
.-.|+.-.+..-++..+.....++ ..|-.+..+|.+..+.++....|+... +.|+.+|..-...+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 345777788888888877664433 336666777889999999999998766 4577888888888888899999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037404 399 LFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV 476 (605)
Q Consensus 399 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 476 (605)
-|++.+.. .| +...|..+..+..+.+.++++...|++.++ .++.-++.|+.....+..++++++|.+.|+.. .+
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99998874 55 456777777788899999999999999998 67778889999999999999999999999987 34
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 477 EPN---------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 477 ~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.|+ +.+-.+++..- -.+++.+|+.++.++.+++|....++..|+.+..++|+.++|+++|++...
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 443 22222232222 348999999999999999999999999999999999999999999998875
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=1.5e-11 Score=113.26 Aligned_cols=486 Identities=12% Similarity=0.048 Sum_probs=339.9
Q ss_pred CCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037404 48 DPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124 (605)
Q Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 124 (605)
+...+....+.-..++++..|+.+|+.... .+...|-.-+..-.++.+...|..++++....=+..|..-|. -+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 334444444444556788889999998874 566667777888889999999999999988753333433332 2223
Q ss_pred hhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccC--CCCeehHHHHHHHHHhCCChhHH
Q 037404 125 CNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNSMIAGLVKGGELSEA 202 (605)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 202 (605)
--..|+...|+++|+.-.+ .+|+...|.+.|..-.+.. .++.|..+++... .|++.+|--....-.++|+...|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRyk--eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYK--EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhh--HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHH
Confidence 3467899999999998876 5789999999999999999 9999999999865 58888998888888999999999
Q ss_pred HHHHhhcCCC--C----cchHHHHHHHHHcCCChHHHHHHHHhCCC----C-ChhHHHHHHHHHHhcCCHHHHHHHH---
Q 037404 203 RRLFDEMPER--D----AVSWNTILDGYAKAGEMNLAFELFEKIPH----R-NIVSWSTMVWGYSKDGDMEMAKLLF--- 268 (605)
Q Consensus 203 ~~~~~~~~~~--~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~--- 268 (605)
..+|...++- | ...+.+....-.+...++.|.-+|+-..+ . ....|..+...--+-|+.....+..
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999887331 2 22344444444556777888888765442 2 1344555555444556654444432
Q ss_pred -----hhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH-------HHH---HHHHHHHccCchHHH
Q 037404 269 -----DRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG-------TLI---SILAACAESGLLGLG 330 (605)
Q Consensus 269 -----~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~---~ll~~~~~~~~~~~a 330 (605)
+.+.+.|+.. |--.++.--..|+.+...++|+..+.. ++|-.. .|. ..+-.-....+.+.+
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ert 385 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERT 385 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2333444444 555666667789999999999999876 555331 121 112222456889999
Q ss_pred HHHHHHHHHcCCCCChhHHHHH----HHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 331 MKVHASINKYRFKCNTNVCNAL----VDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
.++++...+ -++....+|..+ ...-.++.++..|.+++.... -|...+|...|..-.+.+++|.+.+++++..
T Consensus 386 r~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 386 RQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999888 345555666544 334457889999999998776 4566788888888899999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 037404 405 DEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIW 483 (605)
Q Consensus 405 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 483 (605)
+-+ +-|..+|......-...|+.+.|..+|.-++....+.-....|.+.|.--...|.+++|..+++++ ...+...+|
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvW 543 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVW 543 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHH
Confidence 854 336688888888888999999999999999874333444567778888888999999999999988 444555577
Q ss_pred HHHHHHHH-----hcC-----------CHHHHHHHHHHHHhhc----CCCC--chHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 484 GTLLGACR-----KHN-----------AVELAEEVLDCLIRLK----GSDP--GNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 484 ~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~----p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
-++..--. +.+ ....|..+|+++.... |... ..+..+.+.-...|...+...+-.+|.
T Consensus 544 isFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 544 ISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred HhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 66664433 334 5678999999988753 2111 122233333344565555554444443
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.8e-11 Score=112.71 Aligned_cols=455 Identities=10% Similarity=0.042 Sum_probs=335.7
Q ss_pred CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHH
Q 037404 79 DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLID 158 (605)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 158 (605)
+...|-.-.+.-..++++..|.++|++.+..... +...+.--+..-.+......|+.+++..+..-+..| ..|-..+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 4555655666667788999999999999876432 555555566666788899999999999887543333 24444555
Q ss_pred HHHhcCCCChHHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHH
Q 037404 159 SYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAF 234 (605)
Q Consensus 159 ~~~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~ 234 (605)
+--..| ++..|.++|+...+ |+..+|++.|+.-.+-+.++.|..++++. ..|+..+|.--...-.+.|....+.
T Consensus 150 mEE~Lg--Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLG--NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 555678 99999999998874 89999999999999999999999999998 7899999988888888999999999
Q ss_pred HHHHhCCC------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-----cHHHHHHHHHhCCChHHHHHH-----
Q 037404 235 ELFEKIPH------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV-----PWTIIISGYAEKGMAKEAARL----- 298 (605)
Q Consensus 235 ~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~----- 298 (605)
.+|+...+ .+...+.+....-.++..++.|.-+|+-..+.-+. .|..+...--+-|+.......
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 99987764 22345666666666778888898888765432221 144444333345554443332
Q ss_pred ---HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh-hHHHHHHHH--------HHhcCChHHHH
Q 037404 299 ---YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT-NVCNALVDM--------YAKCGSLDNAM 366 (605)
Q Consensus 299 ---~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~A~ 366 (605)
|+.+.+.+ +.|-.++-..+..-...|+.+...++|+.++..-.+.+. ..|...|-. -....+.+.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34444443 567778888888888899999999999999875433221 222222221 13467888899
Q ss_pred HHHhcCC---CCChhHHHH----HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 367 SVFNGMT---KKDLVSWNA----MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 367 ~~~~~~~---~~~~~~~~~----l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
++|+... +..-.||.- ......++.+...|.+++-..+ |..|...+|...|..-.+.+.++.+..++++..
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9987654 444455444 4445567889999999998766 578999999999999999999999999999998
Q ss_pred HhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 440 RDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+ -.+-+..+|...+..-...|+.+.|..+|+-+-.+|. ...|.+.+..-...|.++.|..+|+++++..+...
T Consensus 465 e--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k- 541 (677)
T KOG1915|consen 465 E--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK- 541 (677)
T ss_pred h--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-
Confidence 7 3344778888888888999999999999998733443 34666667777788999999999999999765544
Q ss_pred hHHHHHHHHH-----hcC-----------ChHHHHHHHHHHHhC
Q 037404 516 NYTMLSNIFA-----ATG-----------DWNKVANVRLQMKKT 543 (605)
Q Consensus 516 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 543 (605)
+|...+..-. +.| ....|..+++++...
T Consensus 542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 6777766544 444 567888899888653
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.8e-12 Score=116.90 Aligned_cols=326 Identities=15% Similarity=0.099 Sum_probs=243.9
Q ss_pred CCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-cHHHHHHHHHhCC
Q 037404 212 RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV-PWTIIISGYAEKG 290 (605)
Q Consensus 212 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~l~~~~~~~~ 290 (605)
.|...+-.....+-+.|....|...|......-+..|.+.+....-.-+.+.+..+...+...... .=-.+..++....
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 344444445555667788888888888777655666666665555555555555544444332111 1112344555566
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC--CChhHHHHHHHHHHhcCChHH-HHH
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK--CNTNVCNALVDMYAKCGSLDN-AMS 367 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~-A~~ 367 (605)
..+++..-.......|++.+...-+....+.....|+++|+.+|+++.+..+- -|..+|+.++-.--.+.++.- |..
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 78888888888888887766666666777778889999999999999887431 256777776643333222222 222
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC
Q 037404 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP 446 (605)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 446 (605)
++ .+-+--+.|..++..-|.-.++.++|...|++..+. .|.. ..|+.+..-|....+...|++-++.+++ -.+-
T Consensus 322 v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~ 396 (559)
T KOG1155|consen 322 VS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPR 396 (559)
T ss_pred HH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCch
Confidence 22 233335567778888899999999999999999985 4544 5677777889999999999999999987 4556
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
|-..|-.|+++|.-.+...-|+-+|+++ ..+| |...|.+|+.+|.+.++.++|+..|+++......+..++..|+++|
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLy 476 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLY 476 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 8889999999999999999999999998 4444 6789999999999999999999999999998877888999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 037404 525 AATGDWNKVANVRLQMKK 542 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~ 542 (605)
.+.++.++|.+.+++.++
T Consensus 477 e~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHhHHHHHHHHHHHHH
Confidence 999999999999999887
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.3e-11 Score=113.51 Aligned_cols=375 Identities=14% Similarity=0.109 Sum_probs=266.2
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCC-hhHHHHHHHHHHhcC
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN-IVSWSTMVWGYSKDG 259 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~ 259 (605)
.|...+-...-.+.+.|....|+..|...+..-+..|.+-+....-..+.+.+..+...+...+ ...--.+..++-...
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 4554455555566788999999999988865444555554444444445554444443333222 222234455666666
Q ss_pred CHHHHHHHHhhCCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCchHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKV 333 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 333 (605)
+.+++..-.+.....+... -+....+.-...++++|+.+|+++.+... --|..+|..++-.-.....+.---+.
T Consensus 242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 7777776666665543332 12233345567899999999999998731 12456777666543332222211111
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
...+. +--+.+...+.+.|.-.++.++|...|+...+- ....|+.|.+-|...++...|++-+++.++-+ +-
T Consensus 322 v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~ 396 (559)
T KOG1155|consen 322 VSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR 396 (559)
T ss_pred HHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence 11222 223566777888899999999999999987744 45789999999999999999999999999853 44
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLG 488 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~ 488 (605)
|-..|..|.++|.-.+...=|+-+|+++.. --+.|...|.+|+++|.+.++.++|.+.|... .-+.+...+..|+.
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~Lak 474 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAK 474 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 778999999999999999999999999976 34557899999999999999999999999988 22345678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhh-------cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEE
Q 037404 489 ACRKHNAVELAEEVLDCLIRL-------KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (605)
.|.+.++.++|..++++.++. .|....+...|+.-+.+.+++++|..+..+...-
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~------------------ 536 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG------------------ 536 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC------------------
Confidence 999999999999999998883 2333445566888899999999999987666541
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHHhh
Q 037404 562 EFSVCDQLHPKSEQIYQMINTLGKDLK 588 (605)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (605)
.+..++..++++++.+.+.
T Consensus 537 --------~~e~eeak~LlReir~~~~ 555 (559)
T KOG1155|consen 537 --------ETECEEAKALLREIRKIQA 555 (559)
T ss_pred --------CchHHHHHHHHHHHHHhcC
Confidence 4566777888877766543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=3.9e-12 Score=124.71 Aligned_cols=246 Identities=10% Similarity=0.076 Sum_probs=123.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 287 AEKGMAKEAARLYDQMEEAGLKPDDGTLI--SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
.+.|+++.|...+.++.+. .|+..... .....+...|+++.|...++.+.+.. +-++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555444432 23322111 12334444455555555554444443 2234444445555555555555
Q ss_pred HHHHHhcCCCC---Ch--------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 037404 365 AMSVFNGMTKK---DL--------VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 365 A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
|.+++..+.+. +. .+|..++.......+.+...++++.+.+. .+.+......+...+...|+.++|..
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55444444321 11 12222222222333444444444444322 23345555566666666666666666
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.+++..+ .+|+.... ++.+....++.+++++.+++. +..| |+..+..+...|.+.|++++|.+.|+++.+..|
T Consensus 285 ~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P 359 (398)
T PRK10747 285 IILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP 359 (398)
T ss_pred HHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6666644 23333221 222233446666666666665 2233 344556666777777777777777777777666
Q ss_pred CCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 512 SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 512 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++. .+..++.++.+.|+.++|.+++++...
T Consensus 360 ~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 360 DAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 643 355667777777777777777766654
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.3e-12 Score=112.92 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=150.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
|.+-|...|-++.|+.+|..+.+.+ ..-......++..|....+|++|+.+-..+.+.+..+.. -.+.+.
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~---~eIAqf------ 182 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR---VEIAQF------ 182 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch---hHHHHH------
Confidence 4444555555666666665555432 122334444555555555555555555544443322111 001111
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
|.-+...+....+.+.|..++.+..+.+ |+. ..--.+.+.....|++..|++.++.+.+
T Consensus 183 ------------------yCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e 242 (389)
T COG2956 183 ------------------YCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE 242 (389)
T ss_pred ------------------HHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH
Confidence 2223344444566666666666666542 322 2223344556666777777777776665
Q ss_pred hhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 441 DYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.+..--..+...|..+|...|+.++....+.++ ...+.......+........-.+.|...+.+-++.+|.-...+..
T Consensus 243 -Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl 321 (389)
T COG2956 243 -QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRL 321 (389)
T ss_pred -hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHH
Confidence 233333455666777777777777777766665 334444444555555555555666777777767667775555544
Q ss_pred HHHHHHhc--CChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHH
Q 037404 520 LSNIFAAT--GDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQI 576 (605)
Q Consensus 520 l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (605)
+-.-+... |...+-...+..|....++..|.+.....+-..+.+.+.|......+.+
T Consensus 322 ~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W~CPsC~~W~Ti 380 (389)
T COG2956 322 MDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYWHCPSCRAWETI 380 (389)
T ss_pred HHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeeeeCCCccccccc
Confidence 44444433 5588888899999988888888777777777777788777666555443
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=1.6e-12 Score=127.51 Aligned_cols=278 Identities=13% Similarity=0.032 Sum_probs=220.5
Q ss_pred cCCChHHHHHHHHhCCCC--ChhH-HHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--HH--HHHHHHHhCCChHHHHHH
Q 037404 226 KAGEMNLAFELFEKIPHR--NIVS-WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP--WT--IIISGYAEKGMAKEAARL 298 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~--~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~--~l~~~~~~~~~~~~a~~~ 298 (605)
..|+++.|.+.+....+. ++.. |.....+..+.|+++.|.+.+.++.+.++.. .. .....+...|+++.|...
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999998876543 2333 4344555689999999999999987655444 21 336688899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChh-------HHHHHHHHHHhcCChHHHHHHHhc
Q 037404 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTN-------VCNALVDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~ 371 (605)
++++.+.. +-+...+..+...|.+.|+++.+..++..+.+.+..++.. .|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999864 3356777888899999999999999999999887553321 233334444455667777888887
Q ss_pred CC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCch
Q 037404 372 MT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448 (605)
Q Consensus 372 ~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 448 (605)
+. +.++.....+...+...|+.++|.+++++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 76 457888999999999999999999999998884 4555322 23344566999999999999987 556677
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
..+..+...+.+.|++++|.+.|+++ ...|+...+..+...+.+.|+.++|.+++++.+...
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 78899999999999999999999998 778999999999999999999999999999998753
No 44
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.9e-11 Score=115.39 Aligned_cols=259 Identities=14% Similarity=0.007 Sum_probs=210.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
....-+...+++.+..++.....+.. +++...+..-|.++...|+..+-..+-..+++.- |..+.+|-++.-.|.-.|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence 34455667899999999999998874 5666666666778888888877777767777654 446778888988888899
Q ss_pred ChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 361 SLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 361 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
+..+|++.|.+...- -...|-.+..+|+-.|..|+|+..+...-+. ++-....+..+.--|.+.++.+.|.++|..
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999987643 3479999999999999999999999887763 122222333344458889999999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP--------VEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.. -.+.|+...+-+.-.....+.+.+|..+|+... ..+ -..+++.|+.+|.+.+.+++|+..+++++.
T Consensus 406 A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 406 ALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 965 445577788888888888999999999998761 111 345788999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 509 LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 509 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.|.++.++..++-+|...|+++.|++.|.+..-..
T Consensus 484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988754
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=3.3e-13 Score=129.75 Aligned_cols=277 Identities=12% Similarity=0.046 Sum_probs=209.0
Q ss_pred CCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCchHHHHHH
Q 037404 259 GDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKV 333 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~ 333 (605)
-+..+|...|..+...-.-+ ...+.++|...+++++|.++|+.+.+... .-+..+|.+.+-.+-+. -+..+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 45678888888855432222 35678889999999999999999887531 12345666665443321 12222
Q ss_pred H-HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037404 334 H-ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409 (605)
Q Consensus 334 ~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 409 (605)
+ +.+.+.. +..+.+|-++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2 2233322 446789999999999999999999999988744 446788888888889999999999998765 44
Q ss_pred CCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHH
Q 037404 410 PDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTL 486 (605)
Q Consensus 410 p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l 486 (605)
|.. ..|..+...|.+.++++.|+-.|+++.+ --+-+......++..+.+.|+.++|+++++++ .. +.|+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 544 4567778889999999999999999866 23335667777888899999999999999988 32 3345555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+..+...+++++|.+.++++.+.-|++..++..++.+|.+.|+.+.|+.-+--+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6777888999999999999999999999999999999999999999999888887754
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=3.7e-13 Score=129.37 Aligned_cols=250 Identities=12% Similarity=0.099 Sum_probs=200.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC--CCChhHHHHHHHHHHhcCChHHHH
Q 037404 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF--KCNTNVCNALVDMYAKCGSLDNAM 366 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 366 (605)
.-+..+|+..|.+..++ +.-.......+..+|...+++++++++|+.+.+... ..+..+|.+.+--+-+.-.+..--
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~La 410 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLA 410 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHH
Confidence 34578999999995554 344446667888999999999999999999987542 236677887775544322222222
Q ss_pred HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 367 SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 367 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
+-+-.+-+..+.+|.++..+|.-+++++.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+.++. +.
T Consensus 411 q~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---~~ 485 (638)
T KOG1126|consen 411 QDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG---VD 485 (638)
T ss_pred HHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc---CC
Confidence 222233355789999999999999999999999999988 466 567888888888889999999999998865 22
Q ss_pred C-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 446 P-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 446 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
| +-..|..++-.|.++++++.|+-.|+++ .+.|. .+....++..+.+.|+.++|+++++++..++|.++-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 2 3345556788899999999999999998 66665 5577778888999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhCC
Q 037404 523 IFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++...+++++|...++++.+.-
T Consensus 566 il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999999853
No 47
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=3.3e-11 Score=119.34 Aligned_cols=472 Identities=13% Similarity=0.078 Sum_probs=300.3
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 037404 36 LFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ----DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGV 111 (605)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 111 (605)
++..+...|+.|+..+|.++|..||..|+.+.|- +|..|. ..+...++.++.+..+.++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 3778888999999999999999999999999998 888776 346667899999988888887775
Q ss_pred CCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccC--CCCeehHHHH
Q 037404 112 FTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNSM 189 (605)
Q Consensus 112 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~--~~~~~~~~~l 189 (605)
.|-+.||..|+.+|+..||+..-..+-+.+.. +...+...| .-.....++..+. ......-...
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~------------i~~sfs~~G--vgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLES------------INQSFSDHG--VGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHH------------HHhhhhhhc--cCcHHHHHHhhcccCcccchhHHHH
Confidence 67889999999999999998773333332222 223333444 3333333333321 1111112234
Q ss_pred HHHHHhCCChhHHHHHHhhcCC--CCcchHHHHHHHHHcC-CChHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHH
Q 037404 190 IAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKA-GEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDMEMAK 265 (605)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 265 (605)
+....-.|-++.+++++..+.. .+. ++..+++-+... ..+++-..+-+...+ +++.++..++.+-...|+.+.|.
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 4445566778888888877722 111 222234444332 234444444444444 89999999999999999999999
Q ss_pred HHHhhCCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH----------
Q 037404 266 LLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM---------- 331 (605)
Q Consensus 266 ~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~---------- 331 (605)
.++.+|.+.+... |..|+-+ .++...+..+++-|.+.|+.|+..|+...+..+.+.|....+.
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~t 301 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFT 301 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhh
Confidence 9999999887654 4444444 7888999999999999999999999988777666633211110
Q ss_pred -HHHHHHH-------------------------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------Chh
Q 037404 332 -KVHASIN-------------------------KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-------DLV 378 (605)
Q Consensus 332 -~~~~~~~-------------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~ 378 (605)
.++..+. =.|+.....+|...++ ...+|+-+..+.+...+..| ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 0111110 0233333344443333 22367777777766655532 444
Q ss_pred HHHHHHHHHHHcC----------------------ChHHHHHHHHHHHHCCCCCCH------------------------
Q 037404 379 SWNAMLYGLAMHG----------------------QGEKALGLFSRMKDEGFGPDK------------------------ 412 (605)
Q Consensus 379 ~~~~l~~~~~~~~----------------------~~~~A~~~~~~m~~~g~~p~~------------------------ 412 (605)
.|..++.-|.+.- ...+..+++... .||.
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~ 455 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIA 455 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhh
Confidence 5544444433211 111111111111 2221
Q ss_pred ----HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC-----CCCCHHHH
Q 037404 413 ----YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-----VEPNAIIW 483 (605)
Q Consensus 413 ----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~ 483 (605)
..-+.++..|++.-+..++...-+.... .-+ ...|..|++.++...+.+.|..+.++.. +.-|..-+
T Consensus 456 h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m 531 (1088)
T KOG4318|consen 456 HLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM 531 (1088)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence 1123334444444444444444333333 111 2678899999999999999999999883 22345556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLK---GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
..+.....+.+....+..++++..+.- |........+.......|+.+.-.++.+-+...|...
T Consensus 532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 778888889999999999999888742 3334556667777788899999888888888888755
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=7.5e-12 Score=123.49 Aligned_cols=279 Identities=12% Similarity=0.077 Sum_probs=130.4
Q ss_pred cCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCchHHHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDG--TLISILAACAESGLLGLGMK 332 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~ 332 (605)
.|+++.|.+.+.+..+..+.+ +-.........|+++.|...+.+..+. .|+.. .-......+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 444444444444433322211 222233344445555555555554432 12221 12222444444555555555
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHH----HHHHHHHHcCChHHHHHHHHHHHH
Q 037404 333 VHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWN----AMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
.++.+.+.. +-++.+...+...+.+.|++++|.+.+..+.+. +...+. .........+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555554443 223344445555555555555555555444421 111111 001111222222222333333333
Q ss_pred CCC---CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHH--HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC
Q 037404 406 EGF---GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH--YGCMIDLLGRSGRLKEALRLVQSM-PVEPN 479 (605)
Q Consensus 406 ~g~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 479 (605)
... +.+...+..+...+...|+.++|.+.+++..+. .+.+... ...........++.+.+.+.+++. ...|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 211 124455555556666666666666666666552 1112110 111111122335566666666555 22333
Q ss_pred -H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 480 -A--IIWGTLLGACRKHNAVELAEEVLD--CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 480 -~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+ ....++++.+.+.|++++|.+.|+ .+.+..|++.. +..++.++.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455567777777777777777777 35555555433 55777777777777777777776544
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=2.6e-11 Score=119.72 Aligned_cols=279 Identities=11% Similarity=-0.007 Sum_probs=184.2
Q ss_pred cCCChHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc----cHHHHHHHHHhCCChHHHHHH
Q 037404 226 KAGEMNLAFELFEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLV----PWTIIISGYAEKGMAKEAARL 298 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~ 298 (605)
..|+++.|.+.+.+..+ |+ ...+-....++...|+++.|.+.+.+..+..+. ..-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 35566666665554432 22 222334445566666777776666664322111 122235566667777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH---H----hcCChHHHHHHHhc
Q 037404 299 YDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY---A----KCGSLDNAMSVFNG 371 (605)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~~ 371 (605)
++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..........-..++ . .....+...+.++.
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77777753 2244556666777777777777777777777765432222211111111 2 22233455555555
Q ss_pred CCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 372 MTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT--F-VGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 372 ~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
... .++..+..++..+...|++++|.+++++..+. .|+... + ..........++.+.+.+.++...+. .+
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 553 47888899999999999999999999999986 344432 1 11122234457888999999888773 33
Q ss_pred Cch--HHHHHHHHHhhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 446 PQV--EHYGCMIDLLGRSGRLKEALRLVQS--M-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 446 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
-|+ ....+++..+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344 6777999999999999999999994 3 66899998999999999999999999999998764
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=3.3e-14 Score=133.20 Aligned_cols=251 Identities=13% Similarity=0.143 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCC-C----CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 250 TMVWGYSKDGDMEMAKLLFDRMP-A----KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 250 ~l~~~~~~~~~~~~a~~~~~~~~-~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
.+...+.+.|++++|.+++++.. . .+..-|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34566667777777777774422 2 12222555666666677788888888877765422 34445555555 677
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-----KKDLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+++++|.+++....+.. +++..+...+..+.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888877776654432 355666777788888888888888887743 34667888888899999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-C
Q 037404 400 FSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-V 476 (605)
Q Consensus 400 ~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~ 476 (605)
+++..+. .| |......++..+...|+.+++.+++....+. .+.++..+..++.+|...|+.++|+..+++. . .
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999885 56 4667888888999999999999999888773 3566778889999999999999999999988 3 3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.|+.+...++.++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 34677888899999999999999999888765
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=1.4e-10 Score=107.63 Aligned_cols=218 Identities=15% Similarity=0.083 Sum_probs=175.7
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 037404 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365 (605)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 365 (605)
+.-.|+...|...|+..+.....++. .|..+...|....+.++..+.|..+.+.+. .++.+|..-.+++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHH
Confidence 34578999999999999986433332 277778889999999999999999998774 4778888888999999999999
Q ss_pred HHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 366 MSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 366 ~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
..-|++...- +...|-.+..+..+.+++++++..|++.++. ++.-+..|+.....+...++++.|.+.|+.+++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988744 5566777777777889999999999999886 455678899999999999999999999999876
Q ss_pred CCCCc---------hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 443 GILPQ---------VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 443 ~~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
+.|. +.+...++..- -.+++..|.+++.++ .+.|- ...+..|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2332 22233333333 348999999999998 66665 4588999999999999999999999988763
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.52 E-value=4e-09 Score=101.29 Aligned_cols=508 Identities=12% Similarity=0.134 Sum_probs=282.0
Q ss_pred HHHHHhhcCCchHHHHHHHHHHHh-CCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 20 KLQNLHKCKNLNQTKQLFAQIIKL-DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 20 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
+++++-..+++...+..|+..+.. .+.-...+|.-.+...-..|-++.+.+++++..+-++..-+--|..+++.+++++
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~e 187 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDE 187 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHH
Confidence 444444555555555555555543 2333345555555555555555666666665555444445555666666666666
Q ss_pred HHHHHHHHHhCC------CCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCCc--chhhHHHHHHHhcCCCCh
Q 037404 99 AFRVFLDMQEKG------VFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY--FGDI--FVPNSLIDSYSKCGVVGV 168 (605)
Q Consensus 99 a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~ 168 (605)
|.+.+...+... -+.+...|+-+-...++..+.-....+ +.+.+.|+ -+|. ..|.+|.+-|.+.| .+
T Consensus 188 aa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~g--~~ 264 (835)
T KOG2047|consen 188 AAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRSG--LF 264 (835)
T ss_pred HHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHhh--hh
Confidence 666665554321 111222333333333332222211111 11112221 1222 35666667777777 77
Q ss_pred HHHHHHHhccCCC--CeehHHHHHHHHHhC----------------CC------hhHHHHHHhhcCCC------------
Q 037404 169 SLAKKLFMSMGER--DIVSWNSMIAGLVKG----------------GE------LSEARRLFDEMPER------------ 212 (605)
Q Consensus 169 ~~a~~~~~~~~~~--~~~~~~~li~~~~~~----------------g~------~~~A~~~~~~~~~~------------ 212 (605)
+.|..++++.... .+.-|+.+.+.|+.- |+ ++-.+.-|+.+...
T Consensus 265 ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ 344 (835)
T KOG2047|consen 265 EKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ 344 (835)
T ss_pred HHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc
Confidence 7777776665431 222233333333211 11 11111112221100
Q ss_pred ---CcchHHHHHHHHHcCCChHHHHHHHHhCCC---C------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--
Q 037404 213 ---DAVSWNTILDGYAKAGEMNLAFELFEKIPH---R------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP-- 278 (605)
Q Consensus 213 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-- 278 (605)
+..+|..-. -...|+..+-...|.++.+ | -...|..+...|-..|+++.|..+|++..+-+...
T Consensus 345 n~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 011111111 1123334444444443321 1 12468888999999999999999999987654443
Q ss_pred -----HHHHHHHHHhCCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHHccCchHHHHHHHHH
Q 037404 279 -----WTIIISGYAEKGMAKEAARLYDQMEEAGLK----------P-------DDGTLISILAACAESGLLGLGMKVHAS 336 (605)
Q Consensus 279 -----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (605)
|......-.+..+++.|+++++....---. | +...|...+..-...|-++....+|+.
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 555666666788899999988877542111 1 111233334444456778888888888
Q ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCh-hHHHHHHHHHHH---cCChHHHHHHHHHHHHCCC
Q 037404 337 INKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT----KKDL-VSWNAMLYGLAM---HGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~ 408 (605)
+.+..+- ++.+.-.....+-...-++++.++|++-. .|++ ..|+..+.-+.+ ....+.|..+|++..+ |+
T Consensus 503 iidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C 580 (835)
T KOG2047|consen 503 IIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC 580 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence 8887654 33333334444556667889999998765 3444 467776655443 3468999999999998 77
Q ss_pred CCCHHHHHHHH--HHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 037404 409 GPDKYTFVGVL--CACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIW 483 (605)
Q Consensus 409 ~p~~~~~~~ll--~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 483 (605)
+|...-+..|+ ..-.+-|....|..+++++.. ++++. ..+|+.+|.--...=-+.....+|+++ ..-|+...-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r 658 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAR 658 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHH
Confidence 77654332232 333456889999999999876 55554 457787776544433334444555554 223444332
Q ss_pred ---HHHHHHHHhcCCHHHHHHHHHHHHhhc-CC-CCchHHHHHHHHHhcCChHHHHHH
Q 037404 484 ---GTLLGACRKHNAVELAEEVLDCLIRLK-GS-DPGNYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 484 ---~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~-~~~~~~~l~~~~~~~g~~~~A~~~ 536 (605)
.-+...-.+.|..+.|+.+|....++. |. ++..|...=..-.+.|+-+.-.+.
T Consensus 659 ~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keM 716 (835)
T KOG2047|consen 659 EMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEM 716 (835)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 233455567899999999999998885 42 566788888888889994444333
No 53
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=4.9e-10 Score=101.78 Aligned_cols=250 Identities=13% Similarity=0.025 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHhhCCCC--Ccc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAK--TLV--PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~--~~~--~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 328 (605)
.+.-..|+.+.+-+++.+..+. +.. ..-...+.....|++..|..-+.++.+.+ +-+.........+|.+.|++.
T Consensus 126 ~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~ 204 (400)
T COG3071 126 EAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQ 204 (400)
T ss_pred HHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHH
Confidence 3334444444444444444332 111 13333444445555555555555555432 223334444455555555555
Q ss_pred HHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037404 329 LGMKVHASINKYRFKCN-------TNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 329 ~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
....++..+.+.+.-.+ ..++..+++-....+..+.-...++... +.++..-.+++.-+.+.|+.++|.+
T Consensus 205 ~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 205 ALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHH
Confidence 55555555555443322 2344555555555555555555666665 3456677777777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE 477 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 477 (605)
+..+..+++..|+.. ..-.+.+-++...-++..+.-.+. .+-++..+.+|+..|.+.+.+.+|.+.|+.. +..
T Consensus 285 ~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 285 IIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred HHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 888887777666622 222455667777666666666663 3334467777888888888888888888766 667
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
|+..+|+.+..++.+.|+..+|.++.++++..
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78888888888888888888888888777654
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=3.5e-10 Score=102.70 Aligned_cols=279 Identities=14% Similarity=0.153 Sum_probs=215.2
Q ss_pred hcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHH
Q 037404 257 KDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKV 333 (605)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 333 (605)
..|+|.+|+++..+-.+.+..+ |..-+.+--+.|+.+.+-.++.+.-+....++.....+........|+.+.|..-
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4689999999988866555544 5555666778899999999999998854355566677777888999999999999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-----------hhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD-----------LVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
...+.+.+. .++.+.....++|.+.|++.....++.++.+.. ..+|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 988888764 467888899999999999999999999887542 23667777666666666666667776
Q ss_pred HHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCH
Q 037404 403 MKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNA 480 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 480 (605)
...+ .+-++..-..++.-+.+.|+.++|.++..+..+ .+..|+. ...-.+.+-++...-++..++. ..+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk-~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALK-RQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH-hccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 5543 455666667778888999999999999999888 4666662 2222345666766666666554 223345
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+.+|+..|.+++.+.+|..+++.+++..|+ ...|..+++++.+.|+..+|.+..++..-.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 78889999999999999999999999987766 567999999999999999999999988753
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=3.3e-11 Score=110.25 Aligned_cols=198 Identities=15% Similarity=0.059 Sum_probs=162.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
....+..+...+...|++++|...+++.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34567777888888899999988888665 3356677888888999999999999999988764 3355677778888
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 499 (605)
+...|++++|...++.+......+.....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998873222334567777888999999999999999987 3334 466788889999999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...++++.+..|.++..+..++.++...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999988888888889999999999999999998887653
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=1.6e-10 Score=101.61 Aligned_cols=279 Identities=11% Similarity=0.134 Sum_probs=181.0
Q ss_pred CCChhHHHHHHhhcCCCCcchHH---HHHHHHHcCCChHHHHHHHHhCCC-CCh------hHHHHHHHHHHhcCCHHHHH
Q 037404 196 GGELSEARRLFDEMPERDAVSWN---TILDGYAKAGEMNLAFELFEKIPH-RNI------VSWSTMVWGYSKDGDMEMAK 265 (605)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~-~~~------~~~~~l~~~~~~~~~~~~a~ 265 (605)
..+.++|.++|-+|.+.|+.|+. ++.+.|.+.|..|.|+++...+.+ ||. .....|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45677777777777655555443 466777778888888888776654 333 23456677788899999999
Q ss_pred HHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCC
Q 037404 266 LLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRF 342 (605)
Q Consensus 266 ~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 342 (605)
.+|..+.+.+... .-.|+..|-...+|++|+++-+++.+.+..+...-.
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI---------------------------- 179 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI---------------------------- 179 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH----------------------------
Confidence 9999987744333 677888999999999999999999887655443221
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 343 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
...|--|...+....+.+.|...+.+..+. .+..--.+.+.+...|++..|.+.++...+.+..--..+...|.
T Consensus 180 ---AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 180 ---AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred ---HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 112333444444555666666666655422 23333445566777788888888888777765444445667777
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhc---CC
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ-SMPVEPNAIIWGTLLGACRKH---NA 495 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~p~~~~~~~l~~~~~~~---g~ 495 (605)
.+|...|+.++....+..+.+. .+....-..+...-....-.+.|..++. .+.-+|+...+..++...... |.
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~ 333 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGR 333 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccc
Confidence 8888888888888888777662 3444444455554444555555555543 445678888887777665432 34
Q ss_pred HHHHHHHHHHHHh
Q 037404 496 VELAEEVLDCLIR 508 (605)
Q Consensus 496 ~~~A~~~~~~~~~ 508 (605)
..+....++.++.
T Consensus 334 ~k~sL~~lr~mvg 346 (389)
T COG2956 334 AKESLDLLRDMVG 346 (389)
T ss_pred hhhhHHHHHHHHH
Confidence 5555555555554
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=1.3e-10 Score=115.31 Aligned_cols=438 Identities=13% Similarity=0.041 Sum_probs=256.3
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHH
Q 037404 77 DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156 (605)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (605)
.||.++|..+|.-||..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.++ .|...+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 566777777777777777777776 7777766666666667777777766666666554 5566677777
Q ss_pred HHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc-CCC-CcchHHHHHHHHHcCCChHHHH
Q 037404 157 IDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM-PER-DAVSWNTILDGYAKAGEMNLAF 234 (605)
Q Consensus 157 ~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~ll~~~~~~~~~~~a~ 234 (605)
..+|...| |+.. .+..++ ....++..+...|....-..++..+ ..| ....-..++......|-++.+.
T Consensus 90 l~ayr~hG--Dli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 90 LKAYRIHG--DLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred HHHHHhcc--chHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 77777777 6554 111111 2233444555566655555555554 111 1111123444555667788888
Q ss_pred HHHHhCCC--CCh-hHHHHHHHHHH-hcCCHHHHHHHHhhCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037404 235 ELFEKIPH--RNI-VSWSTMVWGYS-KDGDMEMAKLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309 (605)
Q Consensus 235 ~~~~~~~~--~~~-~~~~~l~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 309 (605)
+++..+.. .+. ... .++-.. ....+++-........+ +++.+|.+++..-...|+.+.|..++.+|.+.|++.
T Consensus 160 kll~~~Pvsa~~~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred HHHhhCCcccccchHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 88877653 111 111 132222 23345555555555554 677789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh-----------cCCC----
Q 037404 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN-----------GMTK---- 374 (605)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-----------~~~~---- 374 (605)
+.+-|-.++-+ .++...++.+++.|...|+.|+..++.-.+..+..+|....+..... .+..
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a 314 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLA 314 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHh
Confidence 98887777766 88888999999999999999999998877766666444322211110 0000
Q ss_pred -------------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHhcccC
Q 037404 375 -------------------------KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGP-DKYTFVGVLCACTHAG 426 (605)
Q Consensus 375 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p-~~~~~~~ll~~~~~~g 426 (605)
....+|...+. ...+|.-++...+...|..-- ..+ +...|..++.-|.+.-
T Consensus 315 ~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~ 393 (1088)
T KOG4318|consen 315 NKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRI 393 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHH
Confidence 01112222222 122466666666666554311 122 2233444333332211
Q ss_pred C----------------------HHHHHHHHHHhHHh---------------hCCCC-------chHHHHHHHHHhhhcC
Q 037404 427 F----------------------IDKGVQYFYSMERD---------------YGILP-------QVEHYGCMIDLLGRSG 462 (605)
Q Consensus 427 ~----------------------~~~a~~~~~~~~~~---------------~~~~~-------~~~~~~~l~~~~~~~g 462 (605)
. ..+..++....... ..+.| -...-+.++..+++.-
T Consensus 394 e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 394 ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 0 00111111000000 00000 0112233444455555
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 463 RLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG---SDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 463 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+..+++...++....--...|..++.-+..+.+.+.|..+.++....+. -+-..+..+.+++.+.+...++..++++
T Consensus 474 n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e 553 (1088)
T KOG4318|consen 474 NKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYE 553 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhh
Confidence 5555554433331111124567788888888888888888888766432 2334577889999999999999999999
Q ss_pred HHh
Q 037404 540 MKK 542 (605)
Q Consensus 540 ~~~ 542 (605)
+.+
T Consensus 554 ~ks 556 (1088)
T KOG4318|consen 554 DKS 556 (1088)
T ss_pred hhH
Confidence 987
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=2.2e-09 Score=101.67 Aligned_cols=280 Identities=10% Similarity=-0.004 Sum_probs=216.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
.+........+-+...+++.+..++++.+.+.++.. +..-|.++...|+..+-..+=.++.+. .+-...+|-.+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 345556666677788899999999999887665543 555666888888888888888888875 3445678888888
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 396 (605)
-|...|+.++|.++|......+.. -...|-.+...|+-.|+.|+|+..+....+ ..-.-+--+.--|.+.++...|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 888999999999999988765432 245688889999999999999988875542 1111122234457788999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh-----CCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 397 LGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY-----GILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 397 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
.+.|.+... +.| |+...+-+.-.....+.+.+|..+|+.....- .......+++.|+..|.+.+++++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998876 455 56677777767778899999999999887311 0112355789999999999999999999
Q ss_pred HHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 471 VQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 471 ~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
+++. -.+.+..++.+++-.|...|+++.|...|.+++.++|++..+-..|..+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 9987 3456788999999999999999999999999999999997776666655433
No 59
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=8.5e-09 Score=99.14 Aligned_cols=519 Identities=12% Similarity=0.140 Sum_probs=317.0
Q ss_pred CCCcchHHHHHHHhccCChhHHHHHhcccC-----CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 037404 47 RDPYIAPKLISSLALCRQMGLAIKVFNDIQ-----DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121 (605)
Q Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 121 (605)
.-+.++...++.+.++|++..-++.|++.. ......|...+.-....+-++.+.++|++.++. .| ..-.--
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHH
Confidence 446677777888888999999999998764 356677998999888999999999999999875 33 335566
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhC------CCCCcchhhHHHHHHHhcCCC-ChHHHHHHHhccCC--CC--eehHHHHH
Q 037404 122 LKACNGKNWFHLVQMIHALIYKCG------YFGDIFVPNSLIDSYSKCGVV-GVSLAKKLFMSMGE--RD--IVSWNSMI 190 (605)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~-~~~~a~~~~~~~~~--~~--~~~~~~li 190 (605)
+..+++.+++++|.+.+...+... -+.+-..|..+.+..++..+. ..-....+++.+.. +| ...|+.|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 777888999999999888876432 133445666666666554310 11223444554443 22 34799999
Q ss_pred HHHHhCCChhHHHHHHhhcCCC--CcchHHHHHHHHHc----------------CCC------hHHHHHHHHhCCCC---
Q 037404 191 AGLVKGGELSEARRLFDEMPER--DAVSWNTILDGYAK----------------AGE------MNLAFELFEKIPHR--- 243 (605)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~----------------~~~------~~~a~~~~~~~~~~--- 243 (605)
+.|++.|.++.|..+|++.+.. ...-|..+.++|+. .|+ ++-...-|+.+...
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999999999988432 22233333333332 111 12222223333221
Q ss_pred ------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCccc--HHHHHHHHHhCCChHHHHHHHHHH
Q 037404 244 ------------NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA-------KTLVP--WTIIISGYAEKGMAKEAARLYDQM 302 (605)
Q Consensus 244 ------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m 302 (605)
++..|..-+. +..|+..+-...+.+..+ .+... |..+.+.|-..|+.+.|..+|.+.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 2222332222 223455555555554321 12111 888889999999999999999888
Q ss_pred HHcCCCCC---HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----------CC------ChhHHHHHHHHHHhcCCh
Q 037404 303 EEAGLKPD---DGTLISILAACAESGLLGLGMKVHASINKYRF-----------KC------NTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 303 ~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~ 362 (605)
.+-..+-- ..+|......-.+..+++.|..+.+.+..... ++ +..+|...++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 76432211 12344444444556677777777776643211 11 233444455555566777
Q ss_pred HHHHHHHhcCCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhc---ccCCHHHHHHHH
Q 037404 363 DNAMSVFNGMTKKDLVSWN---AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACT---HAGFIDKGVQYF 435 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~---~~g~~~~a~~~~ 435 (605)
+....+|+++.+--+.|=. .....+-.+.-++++.+++++-+..--.|+.. .|+..+.-+. ....++.|..+|
T Consensus 494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7777788777643222211 12222334556778888887655543345543 4554443332 344789999999
Q ss_pred HHhHHhhCCCCchH--HHHHHHHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 436 YSMERDYGILPQVE--HYGCMIDLLGRSGRLKEALRLVQSM--PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 436 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+++.+ +.+|... .|......--+.|-...|+++++++ ++++. ...|+..+.-....=-+..-+.+|+++++.
T Consensus 574 EqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99998 7777533 2333333344568899999999998 34433 236777665444333345567899999998
Q ss_pred cCCCCc--hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHH
Q 037404 510 KGSDPG--NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580 (605)
Q Consensus 510 ~p~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 580 (605)
-|++-. ...-.+++-.+.|..+.|..+|....+...+...+.-| ..|+.| ...|++-+.+.++|
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW----~twk~F---EvrHGnedT~keML 717 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFW----DTWKEF---EVRHGNEDTYKEML 717 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHH----HHHHHH---HHhcCCHHHHHHHH
Confidence 776543 34456777889999999999998887754322222222 233333 23466655555555
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.39 E-value=5.5e-09 Score=102.72 Aligned_cols=389 Identities=13% Similarity=0.058 Sum_probs=255.8
Q ss_pred CCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcCC----C-Ccch
Q 037404 145 GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMPE----R-DAVS 216 (605)
Q Consensus 145 ~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~~~~ 216 (605)
.++.|..+|..|.-+..++| ++..+.+.|++... .....|+.+...+...|.-..|+.+++.... | |...
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g--~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCG--QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hhcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 35567788888888889999 99999999988764 2445788899999999999999999887732 3 2333
Q ss_pred HHHHHHHHHc-CCChHHHHHHHHhCCC--------CChhHHHHHHHHHHhc-----------CCHHHHHHHHhhCCCCCc
Q 037404 217 WNTILDGYAK-AGEMNLAFELFEKIPH--------RNIVSWSTMVWGYSKD-----------GDMEMAKLLFDRMPAKTL 276 (605)
Q Consensus 217 ~~~ll~~~~~-~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~ 276 (605)
+...-..|.. .+.+++++.+-.++.. -....|..+.-+|... ....++.+.+++..+.++
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333344443 4555555555433322 2334555555555422 124556677777654333
Q ss_pred cc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCChhHHHHH
Q 037404 277 VP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNAL 352 (605)
Q Consensus 277 ~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 352 (605)
.. -..+.--|+..++.+.|+...++..+-+..-+...|..+...+...+++..|+.+.+..... |. |......-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence 33 22233456677889999999999988766778888888888888889999999888776532 21 11111111
Q ss_pred HHHHHhcCChHHHHHHHhcC--------------------------C--C---CC-hhHHHHHHHHHHHcC---ChHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGM--------------------------T--K---KD-LVSWNAMLYGLAMHG---QGEKAL 397 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~--------------------------~--~---~~-~~~~~~l~~~~~~~~---~~~~A~ 397 (605)
++.-..-++.+++......+ . . .+ +.++..+.......+ .++..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~- 632 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK- 632 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc-
Confidence 11122234444443322211 1 0 01 122222221111110 11111
Q ss_pred HHHHHHHHCCCCC--C------HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 398 GLFSRMKDEGFGP--D------KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 398 ~~~~~m~~~g~~p--~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
+...-+.| + ...|......+.+.+..++|...+.++.. -.+.....|...+..+...|..++|.+
T Consensus 633 -----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 633 -----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred -----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 11111222 2 12344555678888999999988888866 455567788888889999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 470 LVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEE--VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 470 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.|... .+.|+ +.+..+++..+.+.|+...|.. ++..+++.+|.++.+|+.++.++.+.|+.++|.+-|+...+...
T Consensus 706 af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 706 AFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 99887 56666 5588899999999998888888 99999999999999999999999999999999999999988643
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.7e-08 Score=90.76 Aligned_cols=281 Identities=10% Similarity=0.015 Sum_probs=195.0
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT-LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
.|......+...+...|+.++|+..|.+.+.. .|+..+ .....-.+...|+.+....+...+.... +.+...|..-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 34444677778888888888888888887763 444332 1222223456677776666665554322 1122233333
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFI 428 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 428 (605)
+......++++.|+.+-++..+. +...+-.-...+...+++++|.-.|+..+. +.| +..+|..|+.+|...|..
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 44455677888888888876643 444555555678888999999999988776 354 668899999999999999
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHH-HHh-hhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMI-DLL-GRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
.+|.-.-....+ -++.+..+...+. ..+ -.-..-++|.+++++. .++|+-. ..+.+...|...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 998887777766 3455555555543 222 2233457888888887 6778744 66777888889999999999999
Q ss_pred HHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHH
Q 037404 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLG 584 (605)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 584 (605)
+.+...|+ ...+..|++++.....+.+|.+.|..+... +|+.+...+=+..++
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHH
Confidence 99987776 457889999999999999999999888763 556666666676666
Q ss_pred HHhh
Q 037404 585 KDLK 588 (605)
Q Consensus 585 ~~~~ 588 (605)
++++
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 6554
No 62
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.33 E-value=4.1e-08 Score=93.80 Aligned_cols=437 Identities=14% Similarity=0.105 Sum_probs=255.2
Q ss_pred HHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhH--HHHHHHhcCC
Q 037404 88 RACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNS--LIDSYSKCGV 165 (605)
Q Consensus 88 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~ 165 (605)
.-+..+|++++|.....+++..+ +-|...+..-+-+....+.+++|..+.+ ..+.. .+++. +=.+||....
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~~---~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGAL---LVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcchh---hhcchhhHHHHHHHHHc
Confidence 34556677778887777777654 3344455555556667777777764332 22211 11111 3556665444
Q ss_pred CChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHH-HcCCChHHHHHHHHhCCCC-
Q 037404 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGY-AKAGEMNLAFELFEKIPHR- 243 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~- 243 (605)
...++|...++....-+..+...-...+-+.|++++|+++|+.+.+.+...+...+.+- ...+-.-.+. +.+.....
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~~q~v~~v~ 171 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-LLQSVPEVP 171 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-HHHhccCCC
Confidence 48888888888555555556666677888899999999999998665555444433221 1111111121 33333322
Q ss_pred --ChhHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCC-----ccc-----HHHHHHHHHhCCChHHHHHHHHHHH
Q 037404 244 --NIVSWSTMVWGYSKDGDMEMAKLLFDRM--------PAKT-----LVP-----WTIIISGYAEKGMAKEAARLYDQME 303 (605)
Q Consensus 244 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~-----~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~ 303 (605)
+...+......++..|++.+|+++++.. ...+ +.. --.|...+...|+..+|..+|...+
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 2233344455677889999999998876 1111 111 2345566778999999999999998
Q ss_pred HcCCCCCHHHHHHHHH---HHHccCchHH--HHHHHH------------HHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 037404 304 EAGLKPDDGTLISILA---ACAESGLLGL--GMKVHA------------SINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366 (605)
Q Consensus 304 ~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 366 (605)
+.. .+|......+.+ +.....++-. +...++ .+.... ......-+.++.+| .+..+.+.
T Consensus 252 ~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r 327 (652)
T KOG2376|consen 252 KRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVR 327 (652)
T ss_pred Hhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHH
Confidence 875 455533322222 2222111111 111111 111110 00111112233333 35667777
Q ss_pred HHHhcCCCCC-hhHHHHHHHHH--HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH-------
Q 037404 367 SVFNGMTKKD-LVSWNAMLYGL--AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY------- 436 (605)
Q Consensus 367 ~~~~~~~~~~-~~~~~~l~~~~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------- 436 (605)
++........ ...+..++..+ ++...+.++.+++...-+....-........+......|+++.|.+++.
T Consensus 328 ~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 328 ELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred HHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 7777766443 23444444432 2233577888888877664322223455566777889999999999998
Q ss_pred -HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 437 -SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-----PVEPNAI----IWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 437 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
.+.+ .+..| .+...+...+.+.++.+.|..++++. ...+... ++.-++..-.+.|+-++|...++++
T Consensus 408 ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel 484 (652)
T KOG2376|consen 408 SSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEEL 484 (652)
T ss_pred hhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHH
Confidence 4443 34444 45556777788888766676666655 1112222 3333444456779999999999999
Q ss_pred HhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 507 IRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 507 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
++.+|++..+...++-+|++. +.+.|..+-+.+
T Consensus 485 ~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 485 VKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 999999999999999888765 455566654433
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.1e-10 Score=102.50 Aligned_cols=226 Identities=13% Similarity=0.042 Sum_probs=161.5
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcC
Q 037404 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHG 391 (605)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~ 391 (605)
..+..+|.+.|-+..|++.++...+.. |-+.+|..|-+.|.+..+++.|+.+|.+-.+ .|+....-+.+.+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 345555556666666665555554432 3445556666666666677777766665542 23334444566666677
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
+.++|.++++...+.. ..+......+...|.-.++++.|..+|.++.+ .|.. ++..|+.+.-+|.-.+++|-++..|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 7788888888777642 33555566666667777788888888888877 4543 5667777777777888888888877
Q ss_pred HhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 472 QSM---PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 472 ~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
+++ ...|+ ..+|..+.......||+..|.+.|+-++..+|++...+..|+-.-.+.|++++|..+++......+
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 766 12233 557888888888899999999999999999999999999999999999999999999998887654
No 64
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=4.9e-10 Score=109.34 Aligned_cols=230 Identities=15% Similarity=0.175 Sum_probs=153.8
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHc-----CC-CCCh-hHHHHHHHHHHhcCChHHHHHHHhcCC--------CCC-
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKY-----RF-KCNT-NVCNALVDMYAKCGSLDNAMSVFNGMT--------KKD- 376 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~- 376 (605)
+...+...|...|+++.|...++...+. |. .|.. ...+.+...|...+++.+|..+|+++. +.+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555555444332 10 1111 122345566666777777766666554 111
Q ss_pred --hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhC--CC
Q 037404 377 --LVSWNAMLYGLAMHGQGEKALGLFSRMKD-----EGFG-PDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYG--IL 445 (605)
Q Consensus 377 --~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~-p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~ 445 (605)
..+++.|..+|.+.|++++|...+++..+ .|.. |... .++.+...|...+++++|..+++...+-.. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 24566666677777777777776666443 1222 2222 356677778899999999999887765322 22
Q ss_pred Cc----hHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 037404 446 PQ----VEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-- 509 (605)
Q Consensus 446 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 509 (605)
++ ..+++.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++++|.++|.+...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 467899999999999999999999877 11222 457788999999999999999999988775
Q ss_pred --cCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 510 --KGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 510 --~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.|++| .+|..|+.+|.+.|++++|.++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45554 4578899999999999999999999875
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=1.1e-09 Score=112.41 Aligned_cols=242 Identities=14% Similarity=0.083 Sum_probs=178.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH---------ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 290 GMAKEAARLYDQMEEAGLKPDD-GTLISILAACA---------ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 290 ~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
++.++|...|++..+. .|+. ..+..+..++. ..+++++|...++++.+.+. .+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHc
Confidence 3467888999888875 4543 34444443332 23457889999999888763 3677888888899999
Q ss_pred CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 360 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
|++++|...|++.. +.+...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 99999999999876 335678888899999999999999999999985 4543 23334444566789999999999
Q ss_pred HHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhh---
Q 037404 436 YSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRL--- 509 (605)
Q Consensus 436 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 509 (605)
+++.. ..+| ++..+..+..++...|+.++|...+.++ +..|+.. ..+.+...+...| ++|...++++.+.
T Consensus 430 ~~~l~--~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 430 DELRS--QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHHH--hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 99876 2334 4556778888999999999999999987 4455544 4455556667766 4788877777765
Q ss_pred cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|.++. .+..++.-.|+-+.+..+ +++.+.+
T Consensus 506 ~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 506 IDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 344443 367778888888888777 8888764
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.8e-08 Score=91.83 Aligned_cols=273 Identities=11% Similarity=0.023 Sum_probs=209.3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037404 242 HRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318 (605)
Q Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 318 (605)
..|+.....+..++...|+.++|...|++...-++.+ .....-.+.+.|+.+....+...+.... .-....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 4678889999999999999999999999977655544 3334445567899998888888887642 12333333334
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
.......+++.|..+-+..++.+. .+...+-.-...+...|+.++|.-.|+... +-+..+|.-++.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 445567788888888888877653 245556556677889999999999998655 3478999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHh-cccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVL-CAC-THAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll-~~~-~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
|...-+...+. +..+..+...+. ..| .....-++|..++++... +.|+ ....+.+.+.+...|..+.+..+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99988876654 344566665552 233 334456788899888754 5565 4567788899999999999999999
Q ss_pred hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 473 SM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 473 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
+. ...||....+.|...+...+.+++|...|..+++++|.+..+..-|
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 87 6789999999999999999999999999999999999987654433
No 67
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.29 E-value=5.4e-08 Score=86.97 Aligned_cols=437 Identities=10% Similarity=0.008 Sum_probs=232.6
Q ss_pred HHHHhccCChhHHHHHhcccCCC----CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCH
Q 037404 56 ISSLALCRQMGLAIKVFNDIQDP----DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWF 131 (605)
Q Consensus 56 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 131 (605)
+.-+...+++..|+.+++--... ...+-.++..++...|++++|+.+|..+.+. -.|+......|.-...-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 44456677888888888754311 1122234667788899999999999988875 455666666666556667788
Q ss_pred HHHHHHHHHHHHhCCCCCcchhhH-HHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcC
Q 037404 132 HLVQMIHALIYKCGYFGDIFVPNS-LIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMP 210 (605)
Q Consensus 132 ~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 210 (605)
.+|+.+-... |+...... |...-.+.+ +-++.....+++.... .--..|.+..-..-.+++|++++.+..
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahkln--dEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLN--DEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhC--cHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776543 34444444 444555566 6666666666655432 233345555555567899999999884
Q ss_pred C--CCcchHHH-HHHHHHcCCChHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHH
Q 037404 211 E--RDAVSWNT-ILDGYAKAGEMNLAFELFEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIIS 284 (605)
Q Consensus 211 ~--~~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 284 (605)
. |+-...|. +.-+|.+..-++-+.++++--.+ || ....|..+....+.-.-..|++-.+.+.+.....|- .+.
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~ 257 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIE 257 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHH
Confidence 4 33344443 34456666666766666544332 22 233333333333321112222222222111111111 111
Q ss_pred HHHhC-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH-----H
Q 037404 285 GYAEK-----GMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV-----D 354 (605)
Q Consensus 285 ~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 354 (605)
-+++. .+-+.|++++-.+.+. .|.. -..++.-|.+.+++.+|..+.+.+.- ..|-..+...++ +
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhh
Confidence 11111 2234555555444432 2221 12334445566666666655544321 011111111111 1
Q ss_pred HHHhcCChHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTKK-----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 429 (605)
-......+.-|...|+-.... .+..-.++.+.+.-..++++++..++.+..-- ..|...-..+.++++..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChH
Confidence 111112344455555433321 22334455566666667777777777666542 233333334667777777788
Q ss_pred HHHHHHHHhHHhhCCCCchHHH-HHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT-LLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
+|+++|-.+.. ..++ |..+| ..|..+|.++++++-|.+++-++..+.+..++.. +...|.+.+.+--|.+.|+.+.
T Consensus 411 eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 411 EAEELFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 88777766643 1222 33344 4566777777888888777777753334444333 3466777777777777777777
Q ss_pred hhcCC
Q 037404 508 RLKGS 512 (605)
Q Consensus 508 ~~~p~ 512 (605)
.++|.
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 76665
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=5.4e-12 Score=82.33 Aligned_cols=50 Identities=32% Similarity=0.600 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 037404 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127 (605)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 127 (605)
||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.6e-10 Score=101.64 Aligned_cols=236 Identities=13% Similarity=0.070 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
+.+.++|.+.|.+.+|...++..++. .|...||..+-.+|.+..++..|..++.+-.+.- +.++....-..+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 46888999999999999999988875 6777888889999999999999999998877653 44555566677888889
Q ss_pred CChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
++.++|.++|+...+ .++....++...|.-.++++-|+..++++.+.|+ -+...|..+.-+|.-.+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999997763 4667777788889999999999999999999985 467888888889999999999999999
Q ss_pred HhHHhhCCCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 437 SMERDYGILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 437 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
++... --.|+ ..+|..+.......|++.-|.+.|+-. ....+...++.|.-.-.+.|++++|..++..+....|+
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 98873 33343 567888999999999999999999987 33345679999998899999999999999999999998
Q ss_pred CCchHHHH
Q 037404 513 DPGNYTML 520 (605)
Q Consensus 513 ~~~~~~~l 520 (605)
-.+..+.+
T Consensus 462 m~E~~~Nl 469 (478)
T KOG1129|consen 462 MAEVTTNL 469 (478)
T ss_pred ccccccce
Confidence 66554444
No 70
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=6.8e-10 Score=93.25 Aligned_cols=163 Identities=14% Similarity=0.091 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
+...+.-+|...|++..|..-+++..+. .|+ ..++..+...|.+.|..+.|.+-|+++.. --+-+..+.|....-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 4455677899999999999999999886 454 46788888899999999999999999976 344467788999999
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 458 LGRSGRLKEALRLVQSMPVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
+|.+|++++|...|+++-..|+ ..+|..++.+..+.|+++.|...++++++.+|+.+.....++....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998822232 558888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 037404 534 ANVRLQMKKTRA 545 (605)
Q Consensus 534 ~~~~~~~~~~~~ 545 (605)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998887653
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2.6e-09 Score=97.60 Aligned_cols=162 Identities=19% Similarity=0.110 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCAC 422 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 422 (605)
..+..+...+...|++++|.+.+++.. +.+...+..+...+...|++++|...+++.......+ ....+..+..++
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 145 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA 145 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 334444444455555555555554333 2233445555556666666666666666665532112 233455566667
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|...+.+... ..+.+...+..+...+...|++++|.+.+++. .. +.+...+..++..+...|+.++|.
T Consensus 146 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 223 (234)
T TIGR02521 146 LKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQ 223 (234)
T ss_pred HHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence 777777777777777765 23334556667777777777777777777765 22 234455556666677777788777
Q ss_pred HHHHHHHhhc
Q 037404 501 EVLDCLIRLK 510 (605)
Q Consensus 501 ~~~~~~~~~~ 510 (605)
.+.+.+.+..
T Consensus 224 ~~~~~~~~~~ 233 (234)
T TIGR02521 224 RYGAQLQKLF 233 (234)
T ss_pred HHHHHHHhhC
Confidence 7777666543
No 72
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=8.1e-08 Score=85.89 Aligned_cols=444 Identities=9% Similarity=-0.011 Sum_probs=254.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHH-HhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 037404 87 IRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK-ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165 (605)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (605)
+.-+..+.++..|+.+++.-...+-. .......-+. .+...|++++|...+..+... -.++...+-.|...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg- 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLG- 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHH-
Confidence 55667778888888888766544322 1123333343 356888999988888887763 3556666666666666677
Q ss_pred CChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCCh
Q 037404 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 245 (605)
.+.+|..+-.+.++ ++-.-..+.....+.|+-++-..+-..+.... .--.++.......-++.+|++++.+....+.
T Consensus 106 -~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ 182 (557)
T KOG3785|consen 106 -QYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQDNP 182 (557)
T ss_pred -HHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 88888887776543 22333444455556666665555544442211 1122333444444567778888877765333
Q ss_pred --hHHH-HHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 246 --VSWS-TMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 246 --~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
...| .+.-+|.+..-++-+.+++..-.+. +...-|.......+.=+-..|..-.+.+.+.+-.. |- .+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-f~~ 257 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-FIE 257 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-hHH
Confidence 2222 2334566666666666655543221 11122332222222222222333333333332111 10 111
Q ss_pred HHHc-----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCC--
Q 037404 320 ACAE-----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQ-- 392 (605)
Q Consensus 320 ~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 392 (605)
-.++ -.+-+.|.+++-.+.+.- +..-..|+-.|.+.+++.+|..+.+.+.+..+.-|-.-.-.++..|+
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~ 333 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQET 333 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhc
Confidence 1111 123355566555444321 23334566678999999999999999987776655444444444443
Q ss_pred -----hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 393 -----GEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 393 -----~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
..-|...|+-.-+.+..-|.. --.++..++.-..++++.+.++..+.. +-...|.. --.+..+++..|++.+
T Consensus 334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~F-n~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDF-NLNLAQAKLATGNYVE 411 (557)
T ss_pred CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchh-hhHHHHHHHHhcChHH
Confidence 233444444333344333221 122334444455678888888888876 33333333 3457899999999999
Q ss_pred HHHHHHhCC--CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 467 ALRLVQSMP--VEPNAIIWG-TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 467 A~~~~~~~~--~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|+++|-... .-.|..+|. .|.++|.+.++.+.|..++-+... ..+....+..++..+.+.+.+--|.+.+..+...
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t-~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT-PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 999998872 113455555 456888899999998887754322 1223445667778889999999899999988876
Q ss_pred CCCCC
Q 037404 544 RAQKP 548 (605)
Q Consensus 544 ~~~~~ 548 (605)
.+.|+
T Consensus 491 DP~pE 495 (557)
T KOG3785|consen 491 DPTPE 495 (557)
T ss_pred CCCcc
Confidence 65443
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=1.6e-09 Score=111.29 Aligned_cols=212 Identities=11% Similarity=-0.009 Sum_probs=164.5
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH---------hcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYA---------KCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 392 (605)
+++++|...+++..+.... +...+..+..+|. ..+++++|...+++.. +.+...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 3467899999998876532 4556666665544 2345789999998776 3466788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
+++|...|++..+.+ +.+...+..+..++...|++++|...++++.+ ..|+ ...+..++..+...|++++|...+
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999863 33456788888899999999999999999977 3343 333344455577789999999999
Q ss_pred HhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 472 QSM--PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 472 ~~~--~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+++ ...|+ +..+..+..++...|++++|...+.++....|.+......++..|...| ++|...++++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 887 22354 4456777888889999999999999988888888888888888888888 4888888887764
No 74
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=2e-09 Score=101.05 Aligned_cols=189 Identities=14% Similarity=0.086 Sum_probs=106.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHh
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCAC 422 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~ 422 (605)
..|..+...|...|+.++|...|++.. +.++..|+.+...+...|++++|...|++..+. .|+ ..++..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 345555566666667666666666544 334566677777777777777777777776663 443 45556666666
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|.+.++...+. .|+..........+...++.++|.+.+.+. ...|+...+ .......|+..++
T Consensus 143 ~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~- 215 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGW---NIVEFYLGKISEE- 215 (296)
T ss_pred HHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHH---HHHHHHccCCCHH-
Confidence 6777777777777776552 232221122222234456677777777543 222222211 1222233443332
Q ss_pred HHHHHHH-------hhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 501 EVLDCLI-------RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 501 ~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..++.+. +..|..+.+|..++.++.+.|++++|+..|+++.+.+
T Consensus 216 ~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 216 TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333332 3345555677777777777777777777777777643
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=4.6e-07 Score=88.79 Aligned_cols=353 Identities=15% Similarity=0.183 Sum_probs=210.5
Q ss_pred hHHHHHHHhcCCCChHHHHHHHhccC--CCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcc--------hHH-----
Q 037404 154 NSLIDSYSKCGVVGVSLAKKLFMSMG--ERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV--------SWN----- 218 (605)
Q Consensus 154 ~~l~~~~~~~g~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~----- 218 (605)
.+-|+.|.+.| .+..|.+....-. ..|......+..++.+..-+++|-.+|+++..+|.. .|.
T Consensus 619 laaiqlyika~--~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaiel 696 (1636)
T KOG3616|consen 619 LAAIQLYIKAG--KPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIEL 696 (1636)
T ss_pred HHHHHHHHHcC--CchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHH
Confidence 45677888888 6666655543221 234444444555555555555555555555333211 000
Q ss_pred --------------HHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--HHHH
Q 037404 219 --------------TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP--WTII 282 (605)
Q Consensus 219 --------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l 282 (605)
.....+...|+++.|...|-+. .....-+.+......|.+|+.+++.+.+.+..+ |..+
T Consensus 697 arfafp~evv~lee~wg~hl~~~~q~daainhfiea-----~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~i 771 (1636)
T KOG3616|consen 697 ARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA-----NCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEI 771 (1636)
T ss_pred HHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh-----hhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHH
Confidence 0011122223333333332211 111223445566677888888888877776666 6677
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
...|...|+++.|.++|-+.- .++..+..|.+.|+|+.|.++-.+. .|.......|-+-..-+-..|++
T Consensus 772 adhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred HHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcch
Confidence 778888888888888875432 2344566788888888877765443 23334455566666667778888
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
.+|+++|-.+..|+. .|..|-+.|..+..+++..+-.- ..-..|...+..-+...|+...|...|-+...
T Consensus 841 ~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-- 910 (1636)
T KOG3616|consen 841 AEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-- 910 (1636)
T ss_pred hhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh--
Confidence 888888877777754 35677788888887777665322 22235666677778888999998888776644
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHH-----HHH------HHHHHHHhcCCHHHH------------
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAI-----IWG------TLLGACRKHNAVELA------------ 499 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-----~~~------~l~~~~~~~g~~~~A------------ 499 (605)
|.+.+.+|...+.+++|-++-+.-+- .|.. .|. +.+..+-++|-.+.|
T Consensus 911 --------~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~ 981 (1636)
T KOG3616|consen 911 --------FKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDF 981 (1636)
T ss_pred --------HHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhh
Confidence 56667777788888888777765421 1111 111 111222233433333
Q ss_pred -HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 500 -EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 500 -~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+.+-+. ....+.++..++..+...|++++|-+.|-+.++.+.
T Consensus 982 afdlari~~--k~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 982 AFDLARIAA--KDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHHHHHhh--hccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 33333222 234456778888889999999999998888887654
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=1.8e-07 Score=90.62 Aligned_cols=373 Identities=12% Similarity=0.061 Sum_probs=197.2
Q ss_pred ChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHHcCCChHHHHHHHHhC
Q 037404 167 GVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYAKAGEMNLAFELFEKI 240 (605)
Q Consensus 167 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 240 (605)
+.++|......... .+.++|..+.-.+....++++|++.|... ..| |...+..+.-.-++.|+++.........
T Consensus 56 ~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~L 135 (700)
T KOG1156|consen 56 KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQL 135 (700)
T ss_pred chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44455444443332 24455666666666666666666666655 223 3334444444444555555555444333
Q ss_pred CC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---ccc--HH------HHHHHHHhCCChHHHHHHHHHHHHcC
Q 037404 241 PH---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKT---LVP--WT------IIISGYAEKGMAKEAARLYDQMEEAG 306 (605)
Q Consensus 241 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~--~~------~l~~~~~~~~~~~~a~~~~~~m~~~~ 306 (605)
.+ .....|..++.++.-.|+...|..+++...+.. +.. +. --.......|..+.|++.+..-...
T Consensus 136 Lql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~- 214 (700)
T KOG1156|consen 136 LQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ- 214 (700)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-
Confidence 32 223456666666666666666666665543221 111 11 1112334556666666655543322
Q ss_pred CCCCHHHH-HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhcCCCC---ChhHHH
Q 037404 307 LKPDDGTL-ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM-SVFNGMTKK---DLVSWN 381 (605)
Q Consensus 307 ~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---~~~~~~ 381 (605)
..|...+ .+-...+.+.+++++|..++..+...++ -+...|..+..++.+-.+.-++. .+|....+. ....-.
T Consensus 215 -i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 215 -IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred -HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh
Confidence 1222222 2334455666777777777776666542 12333333444443222222222 444433311 000000
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh-C------------CCCch
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY-G------------ILPQV 448 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~------------~~~~~ 448 (605)
.=++......-.+..-+++..+.+.|+++-...+.++- -.-...+-..++.-.+.... + -+|..
T Consensus 293 lplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLy---k~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Ptt 369 (700)
T KOG1156|consen 293 LPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLY---KDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTT 369 (700)
T ss_pred ccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHH---hchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchH
Confidence 00011111122333445566667777655333333322 21111111111111111100 1 14554
Q ss_pred HHH--HHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 449 EHY--GCMIDLLGRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 449 ~~~--~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
..| ..++..+-+.|+++.|..+++.+ +..|+.. .|..-.+.+...|++++|..+++++.+++..|..+-..-+.-.
T Consensus 370 llWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 370 LLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 444 45778889999999999999987 6667754 5556678888999999999999999999877776666788888
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 037404 525 AATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.++.+.++|.++....-..|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 999999999999988877654
No 77
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=7.4e-11 Score=76.92 Aligned_cols=50 Identities=34% Similarity=0.602 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 375 KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 375 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67889999999999999999999999999999999999999999998874
No 78
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.17 E-value=5.1e-08 Score=86.77 Aligned_cols=207 Identities=17% Similarity=0.187 Sum_probs=118.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHH---HHHHHcCCChHHHHHHHHhCCCCChhHHH---HHHHHHHhcC
Q 037404 186 WNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI---LDGYAKAGEMNLAFELFEKIPHRNIVSWS---TMVWGYSKDG 259 (605)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~ 259 (605)
...+...+...|++..|+.-|...++.|+..|.++ ...|...|+...|+.-+....+..+..+. .-...+.+.|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 34567777888888888888888877777766655 34566677777777666666542222222 2234566677
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
.++.|..=|+.+.+.++.. |...+|.+-+....+ .......+..+...|+...|+.+...+.+
T Consensus 121 ele~A~~DF~~vl~~~~s~-----------~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSN-----------GLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHHHHHHhcCCCc-----------chhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 7777776666655433321 111111111110000 01122333444556666666666666665
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC---CCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM---TKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK 412 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 412 (605)
.. +.+...+..-..+|...|++..|+.-++.. ...+...+--+-..+...|+.+.++...++-.+ +.||.
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdH 256 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDH 256 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcch
Confidence 43 346666666677777777777776655433 344555555566666667777777776666655 35554
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.16 E-value=4.3e-07 Score=90.27 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
..-.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus 470 ~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 470 EDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred CcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 34688999999999999999999999999999999999999887764
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=6.2e-07 Score=86.00 Aligned_cols=412 Identities=13% Similarity=0.065 Sum_probs=249.3
Q ss_pred HHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeeh--HHHHHHHHHhCCCh
Q 037404 122 LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVS--WNSMIAGLVKGGEL 199 (605)
Q Consensus 122 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~ 199 (605)
++-+...+++++|.+....++..+ +.|...+..=+-+.+..+ .+++|..+.+.-...+... +-.-.-+..+.+..
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~--ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD--KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh--HHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence 445667889999999999999876 445566666677778888 9999998877655322221 12233445588999
Q ss_pred hHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHh-cCCHHHHHHHHhhCCCCCccc
Q 037404 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSK-DGDMEMAKLLFDRMPAKTLVP 278 (605)
Q Consensus 200 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~ 278 (605)
++|+..++...+.|..+...-...+.+.|++++|..+|+.+.+.+...+...+.+-+- .+-.-.+ .+.+........+
T Consensus 96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~-~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV-QLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH-HHHHhccCCCcch
Confidence 9999999966666666777778889999999999999999977655444433332111 1111111 1344444333334
Q ss_pred HHHH---HHHHHhCCChHHHHHHHHHHHHcC-------CCCCH-------HHHHHHHHHHHccCchHHHHHHHHHHHHcC
Q 037404 279 WTII---ISGYAEKGMAKEAARLYDQMEEAG-------LKPDD-------GTLISILAACAESGLLGLGMKVHASINKYR 341 (605)
Q Consensus 279 ~~~l---~~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 341 (605)
|..+ ...+...|++.+|++++....+.+ -.-+. ..-..+.-++...|+.++|..++..+.+..
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 4433 445668899999999999883221 11111 112344556678899999999999998876
Q ss_pred CCCCh---hHHHHHHHHHHhcCChH-HHHHHHhcCCCCCh--------------hHH-HHHHHHHHHcCChHHHHHHHHH
Q 037404 342 FKCNT---NVCNALVDMYAKCGSLD-NAMSVFNGMTKKDL--------------VSW-NAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 342 ~~~~~---~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~--------------~~~-~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
..-.+ ...|.|+.+-....-++ .++..++....... ... +.++..|. +.-+.+.++...
T Consensus 255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~ 332 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSAS 332 (652)
T ss_pred CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHh
Confidence 43221 22233332211111111 22222322221111 111 22222222 223333333222
Q ss_pred HHHCCCCCCHHHHHHHHHHhcc--cCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHH-------
Q 037404 403 MKDEGFGPDKYTFVGVLCACTH--AGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQ------- 472 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~------- 472 (605)
.. +..|. ..+..++..+.+ .....++..++....+ +.+-+ ..+...++......|+++.|.+++.
T Consensus 333 lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ 407 (652)
T KOG2376|consen 333 LP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWK 407 (652)
T ss_pred CC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence 21 12333 334445444322 2257778888887766 44433 4566677888899999999999998
Q ss_pred -hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCC---CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 473 -SM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL----KGSD---PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 473 -~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.. .+...+.+...+...+.+.++.+.|..++.+++.- .+.. ...+..++..-.+.|+-++|..+++++.+.
T Consensus 408 ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 408 SSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 43 23344556666777788888888888888887763 2222 234455666667889999999999999984
Q ss_pred C
Q 037404 544 R 544 (605)
Q Consensus 544 ~ 544 (605)
.
T Consensus 488 n 488 (652)
T KOG2376|consen 488 N 488 (652)
T ss_pred C
Confidence 3
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.15 E-value=3.4e-08 Score=92.74 Aligned_cols=229 Identities=10% Similarity=-0.036 Sum_probs=153.7
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Q 037404 290 GMAKEAARLYDQMEEAG-LKPD--DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM 366 (605)
Q Consensus 290 ~~~~~a~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 366 (605)
+..+.++.-+.+++... ..|+ ...+......+...|+.+.|...|....+... .+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566777777776532 2222 23456666677788888888888888877653 36788888999999999999999
Q ss_pred HHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 367 SVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 367 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
..|++.. +.+..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...+.+... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 9998775 335577888888889999999999999998875 45443222222334567789999999977654 3
Q ss_pred CCCchHHHHHHHHHhhhcCCHH--HHHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLK--EALRLVQSM-PV----EP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-P 514 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~-~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~ 514 (605)
..|+...+ .+. ....|+.. ++.+.+.+. .. .| ....|..++..+...|++++|+..|+++++.+|.+ +
T Consensus 195 ~~~~~~~~-~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 222 23344443 333333322 11 12 23578889999999999999999999999999744 4
Q ss_pred chHHHHHHHHHh
Q 037404 515 GNYTMLSNIFAA 526 (605)
Q Consensus 515 ~~~~~l~~~~~~ 526 (605)
.....++.....
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 444445544433
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.14 E-value=2.4e-06 Score=83.03 Aligned_cols=210 Identities=10% Similarity=0.014 Sum_probs=131.2
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFL 104 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~ 104 (605)
++......+.+.+++ +.+..+.+.....-.+...|+.++|......-.. .+.+.|..+.-.+....++++|++.|.
T Consensus 21 kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~ 99 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYR 99 (700)
T ss_pred HHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHH
Confidence 666666677777776 4445555555554456677899999888876653 455678777777777788999999999
Q ss_pred HHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC----
Q 037404 105 DMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE---- 180 (605)
Q Consensus 105 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~---- 180 (605)
.....+.. |...+.-+--.-+..|+++..........+.. +.....|..+..++.-.| +...|..++++...
T Consensus 100 nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g--~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 100 NALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLG--EYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcc
Confidence 88876322 44455555444556677777776666666542 223456677777777777 78877777765542
Q ss_pred -CCeehHHH------HHHHHHhCCChhHHHHHHhhcCCC--CcchH-HHHHHHHHcCCChHHHHHHHHhCCC
Q 037404 181 -RDIVSWNS------MIAGLVKGGELSEARRLFDEMPER--DAVSW-NTILDGYAKAGEMNLAFELFEKIPH 242 (605)
Q Consensus 181 -~~~~~~~~------li~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~ 242 (605)
++...+.. -.....+.|.+++|++.+....+. |...+ ..-...+.+.+++++|..++..+..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 23222221 223455667777777766655221 22222 2334556667777777777776664
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=1.4e-08 Score=99.22 Aligned_cols=162 Identities=15% Similarity=0.148 Sum_probs=113.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC----------CCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCC--
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMT----------KKDL-VSWNAMLYGLAMHGQGEKALGLFSRMKDE---GFGPD-- 411 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~~p~-- 411 (605)
+++.|..+|.+.|++++|...++... .+.+ ..++.++..|...+++++|..++++..+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445555566666555555554332 1111 24455666777888888888888765532 12222
Q ss_pred --HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh----C-CCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC--------C
Q 037404 412 --KYTFVGVLCACTHAGFIDKGVQYFYSMERDY----G-ILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM--------P 475 (605)
Q Consensus 412 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~ 475 (605)
..+++.+...|...|++++|.+++++++... + ..+ ....++.+...|.+.+++.+|.++|.+. +
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 2468889999999999999999999887642 1 122 2456778888999999999998888776 2
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 476 VEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 476 ~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
..|+. .+|..|...|...|+++.|.++.+.+...
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34554 48999999999999999999999988853
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=4.2e-08 Score=82.70 Aligned_cols=193 Identities=14% Similarity=-0.012 Sum_probs=103.2
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
.|...|+...|..-++.+.+.. +.+..++..+...|.+.|+.+.|.+.|++.. +.+..+.|.....+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3444444444444444444333 1133444455555555555555555555433 33445555555556666666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 397 LGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 397 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+ -.+........+.....+.|++-.|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~ 200 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQ 200 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 66666655432111 234555555555666666666666666655 22333445555666666666666666666655
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 475 -PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 475 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
...++..++...++.-...|+-+.+-++=.++.+..|.++.
T Consensus 201 ~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 201 QRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 23355555555556666666666666666666666665543
No 85
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=1.3e-08 Score=94.03 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=107.0
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----ccCC
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT----HAGF 427 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~ 427 (605)
...++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchh
Confidence 344566678888888877765 45666667778888888888888888888763 333 33344444332 2346
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAV-ELAEEVLD 504 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~-~~A~~~~~ 504 (605)
+.+|..+|+++.. ...+++.+.+.++.+....|++++|.+++.+. .. +.++.++..++.+....|+. +.+.+++.
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 7888888888766 55677788888888888888888888888776 32 33455666777777777776 66778888
Q ss_pred HHHhhcCCCC
Q 037404 505 CLIRLKGSDP 514 (605)
Q Consensus 505 ~~~~~~p~~~ 514 (605)
++...+|.+|
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 8888888765
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.8e-07 Score=79.17 Aligned_cols=416 Identities=11% Similarity=0.057 Sum_probs=229.7
Q ss_pred CCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC--CCeehH
Q 037404 109 KGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSW 186 (605)
Q Consensus 109 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~~~~ 186 (605)
.|+....--|.+++..+.+..++..|.+++..-.+... .+....+.|..+|-+.. ++..|...++++.. |...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q--~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQ--EFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhChHHHHH
Confidence 34444444566777777777777777777766555431 14445566666666666 77777777776654 222222
Q ss_pred HH-HHHHHHhCCChhHHHHHHhhcCC-CCcchHHHHH--HHHHcCCChHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCH
Q 037404 187 NS-MIAGLVKGGELSEARRLFDEMPE-RDAVSWNTIL--DGYAKAGEMNLAFELFEKIP-HRNIVSWSTMVWGYSKDGDM 261 (605)
Q Consensus 187 ~~-li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 261 (605)
.. -...+-+.+.+.+|+.+...|.. ++...-..-+ ......+++..+..++++.. +.+..+.+...-...+.|++
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 21 23445566777777777777644 2222111112 22345667777777777766 35555666666666677777
Q ss_pred HHHHHHHhhCCCC-Ccc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHccCchHHHHHH
Q 037404 262 EMAKLLFDRMPAK-TLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT----LISILAACAESGLLGLGMKV 333 (605)
Q Consensus 262 ~~a~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~ll~~~~~~~~~~~a~~~ 333 (605)
+.|.+-|+...+- +.. .|+. .-++.+.++++.|++...++.+.|++..+.. ..-.+. ....|+. ..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt---~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNT---LVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccch---HHH
Confidence 7777777665432 222 2443 3344456677777777777777665422110 000000 0000000 000
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037404 334 HASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 408 (605)
. .++ -+..+|.-...+.+.|+.+.|.+.+-.|.++ |++|...+.-.= ..+++.+..+-+.-+...+
T Consensus 236 h----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n- 306 (459)
T KOG4340|consen 236 H----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN- 306 (459)
T ss_pred H----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-
Confidence 0 000 1233444455677899999999999999854 667665544322 2455666666666666653
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC-CCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGI-LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLL 487 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 487 (605)
+-...||..++-.||+..-++.|-.++.+-.. ... -.+...|+.|=......-..++|.+-++.+...-....-...+
T Consensus 307 PfP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi 385 (459)
T KOG4340|consen 307 PFPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAI 385 (459)
T ss_pred CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23568999999999999999988888765422 111 1234444433333334456777777666551000000001111
Q ss_pred HH--HHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 488 GA--CRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 488 ~~--~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.. -...++ ...+++-+++.+++. -.+....+++|++..++.-+.++|....+..-
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 11 111121 223444455555543 12467788999999999999999998887543
No 87
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.06 E-value=1.6e-06 Score=85.89 Aligned_cols=415 Identities=13% Similarity=0.062 Sum_probs=265.7
Q ss_pred hCCCchHHHH----HHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCC
Q 037404 92 QNSLNAQAFR----VFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG 167 (605)
Q Consensus 92 ~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 167 (605)
-..+.+++.- .+.++....+..|+..|..+--++...|+++.+-+.|++..... -.....|..+-..|...| .
T Consensus 296 ~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag--~ 372 (799)
T KOG4162|consen 296 PRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAG--S 372 (799)
T ss_pred ccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhc--c
Confidence 3344455443 33444445577788888888888899999999999999887643 335568888999999999 8
Q ss_pred hHHHHHHHhccCC----CC-eehHHHHHHHHH-hCCChhHHHHHHhhcCC--------CCcchHHHHHHHHHcC------
Q 037404 168 VSLAKKLFMSMGE----RD-IVSWNSMIAGLV-KGGELSEARRLFDEMPE--------RDAVSWNTILDGYAKA------ 227 (605)
Q Consensus 168 ~~~a~~~~~~~~~----~~-~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--------~~~~~~~~ll~~~~~~------ 227 (605)
-..|..++++... |+ ...+-..-..|. +-|..++++.+-.+.+. -....|..+.-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 8889999887643 32 333333334444 44677777776666522 2344455554444321
Q ss_pred -----CChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcccHHHHHHHHHhCCChHHH
Q 037404 228 -----GEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA----KTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 228 -----~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a 295 (605)
....++++.+++..+ .|+.+...+.--|+..++++.|.+...+..+ .++..|..|...+...+++.+|
T Consensus 453 ~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHH
Confidence 123455666666643 3444444445567778899999888877643 3455599999999999999999
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHH---------------------cCC-------CCCh
Q 037404 296 ARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASINK---------------------YRF-------KCNT 346 (605)
Q Consensus 296 ~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~-------~~~~ 346 (605)
+.+.+...+. .|+ ..-...-+..-...++.+++......+.. .|. .-.+
T Consensus 533 l~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 533 LDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 9999887754 122 11111112222223444444332222110 110 1112
Q ss_pred hHHHHHHHHHHhcC---ChHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 347 NVCNALVDMYAKCG---SLDNAMSVFNGMTKKD------LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 347 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
.++..+.......+ ..+..+..+.....++ ...|......+.+.++.++|...+.+..+.. ......|..
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~ 689 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYL 689 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHH
Confidence 22222222111111 1111111111111222 1356667778889999999999888887642 335566777
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHh
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALR--LVQSM-PVEP-NAIIWGTLLGACRK 492 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~~~ 492 (605)
....+...|...+|.+.|..... +.| ++....+++.++.+.|+..-|.. ++..+ .+.| +...|..++..+.+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 77788889999999999988865 455 46788899999999998777777 77777 5555 46799999999999
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCc
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.|+.++|.+.|..+.++.+.+|.
T Consensus 767 ~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999877764
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.8e-07 Score=88.69 Aligned_cols=366 Identities=13% Similarity=0.087 Sum_probs=220.1
Q ss_pred HHHHhcCCCChHHHHHHHhccC---CCCeehHHHHHHHHHhCCChhHHHHHHhhc--CCCC-cchHHHHHHHHHcCCChH
Q 037404 158 DSYSKCGVVGVSLAKKLFMSMG---ERDIVSWNSMIAGLVKGGELSEARRLFDEM--PERD-AVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 158 ~~~~~~g~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~~~~~~~~~ 231 (605)
.+....| +++.|..+|-+-. .+|.+.|.--..+|.+.|++++|++--.+- ..|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~--d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSG--DFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred Hhhcccc--cHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 4456678 9999999998654 357788888999999999999998877766 4555 347888899999999999
Q ss_pred HHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHH------hhCCCCCcc--------cHHHHHHHHHhC-----
Q 037404 232 LAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLF------DRMPAKTLV--------PWTIIISGYAEK----- 289 (605)
Q Consensus 232 ~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~------~~~~~~~~~--------~~~~l~~~~~~~----- 289 (605)
+|+.-|.+..+ .|...+.-+..++... . .+.+.| ..+. .++. .|..++..+.+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~-~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLA-NLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhh-cChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999998875 3446677777776111 0 011111 1111 0111 133333322111
Q ss_pred -----CChHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHccCchHHH
Q 037404 290 -----GMAKEAARLYDQM-----EEAG-------LKP------------D----------DGTLISILAACAESGLLGLG 330 (605)
Q Consensus 290 -----~~~~~a~~~~~~m-----~~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a 330 (605)
.....+...+... ...| ..| | ..-...+.+...+..+++.+
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0111111111100 0000 111 0 01123444555556666677
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh---hHH-------HHHHHHHHHcCChHHHHHHH
Q 037404 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL---VSW-------NAMLYGLAMHGQGEKALGLF 400 (605)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-------~~l~~~~~~~~~~~~A~~~~ 400 (605)
.+.+....... .+...++....+|...|....+........+... .-| ..+..+|.+.++++.|+..|
T Consensus 244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 77766666554 3555566666677777776666655554332211 112 22333555566777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH-HHHHHHHHhhhcCCHHHHHHHHHhC--CCC
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE-HYGCMIDLLGRSGRLKEALRLVQSM--PVE 477 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 477 (605)
++.......|+..+ +....+++....+... -+.|... -...-+..+.+.|++..|++.|.++ ..+
T Consensus 322 ~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP 389 (539)
T ss_pred HHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Confidence 77555433433221 1122223332222221 1223221 1122256677888999999998887 333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.|...|.....+|.+.|.+..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++..+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456788888888889999999999999999998888888888888888889999999988888874
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.03 E-value=4.2e-07 Score=90.30 Aligned_cols=295 Identities=16% Similarity=0.117 Sum_probs=133.3
Q ss_pred HHHHcCCChHHHHHHHHhCCC--CC-hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhC-----C
Q 037404 222 DGYAKAGEMNLAFELFEKIPH--RN-IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEK-----G 290 (605)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~-----~ 290 (605)
..+...|++++|++.++.-.. .| ..........+.+.|+.++|..++..+.+.|+.. |..+..+..-. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 445666777777777655433 22 3445566666777777777777777776666555 34444443211 2
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCch-HHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLL-GLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVF 369 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 369 (605)
+.+....+|+++... -|.......+.-.+.....+ ..+..++......|+| .+|+.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 455556666666553 24444433333333322222 2333444455555543 34444544454433333333333
Q ss_pred hcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 370 NGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 370 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
..... .....+.+...- ....-.|+. .++..+...|...|++++|.+++++++. .-+..
T Consensus 167 ~~~~~-----------~l~~~~~~~~~~------~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~ 227 (517)
T PF12569_consen 167 EEYVN-----------SLESNGSFSNGD------DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTL 227 (517)
T ss_pred HHHHH-----------hhcccCCCCCcc------ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCc
Confidence 22110 000000000000 000011222 1233334445555555555555555544 11222
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----------c
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP----------G 515 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----------~ 515 (605)
+..|..-+..|-..|++++|.+.++.+ ... .|..+-+-.+..+.+.|++++|.+.+....+.+. ++ .
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHH
Confidence 445555555555555555555555554 222 2233333344445555555555555555544321 11 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.....+.+|.+.|++..|++.+..+.
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12234455555555555555554443
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1e-08 Score=97.74 Aligned_cols=219 Identities=14% Similarity=0.095 Sum_probs=163.7
Q ss_pred HccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
.+.|++..|.-.|+..++.+ +-+...|..|.......++-..|+..+.+..+ .|......|.-.|...|.-..|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 45566666666666666554 23566777777777777777777777776653 355666777777888888888888
Q ss_pred HHHHHHHCCCCC--------CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 399 LFSRMKDEGFGP--------DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 399 ~~~~m~~~g~~p--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
.|+..+....+- +...-.. ..+..........++|-++....+..+|+.+...|.-.|.-.|++++|.+.
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 888776532110 0000000 122223334455566666655456668899999999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 471 VQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 471 ~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|+.+ .++|+ ...||.|+..++...+.++|+..|.+++++.|.-..+.+.|+-.|...|.|+||.+.|-.++..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9988 55665 6699999999999999999999999999999999999999999999999999999999988774
No 91
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.01 E-value=6.6e-09 Score=95.85 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=158.6
Q ss_pred HHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 285 GYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 285 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
-+.-.|++..++.-.. ........+......+.+++...|+.+.+. ..+.... .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3445677777665444 222111112233445566666677655432 3333322 5555555555554444455666
Q ss_pred HHHHHhcCC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 365 AMSVFNGMT-KK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 365 A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
+..-+++.. .+ +..........+...|++++|++++++- .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666665443 22 2222222334566789999999988642 456777788899999999999999999996
Q ss_pred HhhCCCCchHHHHHHHHHhh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 440 RDYGILPQVEHYGCMIDLLG----RSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
+ +..|. +...++.++. -.+.+.+|.-+|+++ ...+++.+++.++.++...|++++|.+.++++++.+|.+
T Consensus 159 ~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 159 Q---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp C---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred h---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 5 33443 3333444332 234799999999999 445788899999999999999999999999999999999
Q ss_pred CchHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 037404 514 PGNYTMLSNIFAATGDW-NKVANVRLQMKKT 543 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~ 543 (605)
+.++..++-+....|+. +.+.+++.++...
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999998 6677888888874
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.00 E-value=1.2e-06 Score=85.66 Aligned_cols=295 Identities=12% Similarity=-0.027 Sum_probs=174.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC---CCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMP---AKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 320 (605)
.|..+...+...|+.+.+.+.+.... ..+..+ .......+...|++++|...+++..+.. +.+...+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence 34455555555565555544444332 222222 2223345567788889988888887752 223333332 212
Q ss_pred HHc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCh
Q 037404 321 CAE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQG 393 (605)
Q Consensus 321 ~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 393 (605)
+.. .+..+.+.+.+... ....+........+...+...|++++|...+++.. +.+...+..+...|...|++
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 222 34444444444431 11112223344556677888999999999998766 34566778888889999999
Q ss_pred HHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH-H--HHHHHhhhcCCHHHH
Q 037404 394 EKALGLFSRMKDEGF-GPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY-G--CMIDLLGRSGRLKEA 467 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A 467 (605)
++|...+++...... .|+. ..+..+...+...|++++|..+++++.......+..... + .++..+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 999999998776432 1232 235567778889999999999999875421111222211 1 233334444433222
Q ss_pred HHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-C--------CCCchHHHHHHHHHhcCChH
Q 037404 468 LRL---VQSM----PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-G--------SDPGNYTMLSNIFAATGDWN 531 (605)
Q Consensus 468 ~~~---~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~ 531 (605)
.+. .... ..............++...|+.++|...++.+.... . .........+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 222 1111 111111222356677788899999999998887642 2 12344566777889999999
Q ss_pred HHHHHHHHHHhCC
Q 037404 532 KVANVRLQMKKTR 544 (605)
Q Consensus 532 ~A~~~~~~~~~~~ 544 (605)
+|.+.+.......
T Consensus 325 ~A~~~L~~al~~a 337 (355)
T cd05804 325 TALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998753
No 93
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=5.3e-05 Score=75.87 Aligned_cols=216 Identities=12% Similarity=0.109 Sum_probs=115.1
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC-------------CCCcccHHHHHHHHHhCC
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ-------------DPDVHLYNTLIRACVQNS 94 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~ll~~~~~~~ 94 (605)
|+++.|..-.+.+. +..+|..+.+++.+.++.+-|.-.+-.|. .++ ..-..+.-.-...|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 56666544443322 33456666666666666666655554443 121 11111122224456
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHH
Q 037404 95 LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKL 174 (605)
Q Consensus 95 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~ 174 (605)
..++|..+|.+-.+. ..|=+.|-..|.+++|.++-+.--+..+. .||......+-..+ |++.|.+.
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~--Di~~Aley 880 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARR--DIEAALEY 880 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhc--cHHHHHHH
Confidence 777777777766542 33334455667777777665543222221 23444444444555 66666666
Q ss_pred HhccCC-----------------------CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChH
Q 037404 175 FMSMGE-----------------------RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 175 ~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
|++... +|...|......+-..|+.+.|+.+|.... -|-.+.+..+-.|+.+
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCch
Confidence 665421 234445555555556666666666666431 2333444444445555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037404 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271 (605)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 271 (605)
+|-++-++ ..|......|.+.|-..|++.+|..+|.+.
T Consensus 956 kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 956 KAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55554443 235556666777777777777777777664
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=3e-06 Score=84.34 Aligned_cols=363 Identities=13% Similarity=0.107 Sum_probs=219.3
Q ss_pred CCCcchHHHHH--HHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCC---------CCCCc
Q 037404 47 RDPYIAPKLIS--SLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKG---------VFTDN 115 (605)
Q Consensus 47 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------~~p~~ 115 (605)
-|+.+-.++++ .|.--|+.+.|.+-.+.+.. -..|..|.+.+.+.++.+-|.-.+..|.... -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 45566666665 35567999998887766553 3568889999999888888887777775421 1222
Q ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-CCeehHHHHHHHHH
Q 037404 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSMIAGLV 194 (605)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~ 194 (605)
.+=.-+.-.....|.+++|+.++++..+. ..|-..|-..| .+++|.++-+.-.. .=..+|......+-
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g--~w~eA~eiAE~~DRiHLr~Tyy~yA~~Le 869 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQG--MWSEAFEIAETKDRIHLRNTYYNYAKYLE 869 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcc--cHHHHHHHHhhccceehhhhHHHHHHHHH
Confidence 22222333345788999999999988774 35666788889 99999888765332 12236666777777
Q ss_pred hCCChhHHHHHHhhcCC-----------------------CCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHH
Q 037404 195 KGGELSEARRLFDEMPE-----------------------RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTM 251 (605)
Q Consensus 195 ~~g~~~~A~~~~~~~~~-----------------------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 251 (605)
..++.+.|++.|++... .|...|..-...+-..|+.+.|+.+|... .-|.++
T Consensus 870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-----~D~fs~ 944 (1416)
T KOG3617|consen 870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-----KDYFSM 944 (1416)
T ss_pred hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-----hhhhhh
Confidence 88889999999887621 23444555555555677777777777553 345666
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHHccC--
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAG--LKP--DDGTLISILAACAESG-- 325 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~ll~~~~~~~-- 325 (605)
++..+-.|+.++|.++-++ ..+......|.+.|-..|++.+|...|-+..... +.. ....-..+.+.+...|
T Consensus 945 VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~ 1022 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGS 1022 (1416)
T ss_pred eeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCch
Confidence 6777777788887777766 3445556678888888888888888887764311 000 0000011222222222
Q ss_pred chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--------------CCChhHHHHHHHHHHHcC
Q 037404 326 LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT--------------KKDLVSWNAMLYGLAMHG 391 (605)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~l~~~~~~~~ 391 (605)
+.-.|-++|++.- . -+...+..|-+.|.+.+|+++-=+-. ..|+...+.-...++.+.
T Consensus 1023 d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~ 1094 (1416)
T KOG3617|consen 1023 DLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQ 1094 (1416)
T ss_pred hHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHH
Confidence 2223333443321 1 12223445667777766665432111 225556666666677777
Q ss_pred ChHHHHHHHHHHHH----------CCC----------------CCCHH----HHHHHHHHhcccCCHHHHHHHHHHh
Q 037404 392 QGEKALGLFSRMKD----------EGF----------------GPDKY----TFVGVLCACTHAGFIDKGVQYFYSM 438 (605)
Q Consensus 392 ~~~~A~~~~~~m~~----------~g~----------------~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (605)
++++|..++-..++ .|+ .|+.. ....+...|.++|.+..|.+-|..+
T Consensus 1095 qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1095 QYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 77777766544332 111 22222 3445566777778777776666554
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.97 E-value=1.4e-06 Score=88.65 Aligned_cols=502 Identities=15% Similarity=0.054 Sum_probs=271.3
Q ss_pred HHHHHHHHHhCCCCC-CcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037404 34 KQLFAQIIKLDLQRD-PYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109 (605)
Q Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 109 (605)
..++.-+......++ ...|..|.+.|+...+...|.+.|+..- ..+...+..+...|++..+++.|..+.-..-+.
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk 555 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK 555 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence 333333333343343 3567778888887778888999888665 466778888899999999999998883333222
Q ss_pred CCCCCcccHHHHHH--HhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHH
Q 037404 110 GVFTDNFTYPFLLK--ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWN 187 (605)
Q Consensus 110 ~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~ 187 (605)
. +.-...++-+-. .+...++...+..-|+..++.. +-|...|..|..+|.++| .+..|.++|.+...-++..+.
T Consensus 556 a-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG--ry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 556 A-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG--RYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred c-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC--ceehHHHhhhhhHhcCcHhHH
Confidence 1 101112222222 2567788888888888887754 336778999999999999 999999999877664433222
Q ss_pred ---HHHHHHHhCCChhHHHHHHhhcCC------C----CcchHHHHHHHHHcCCChHHHHHHHHhCCC-----------C
Q 037404 188 ---SMIAGLVKGGELSEARRLFDEMPE------R----DAVSWNTILDGYAKAGEMNLAFELFEKIPH-----------R 243 (605)
Q Consensus 188 ---~li~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----------~ 243 (605)
-..-.-+..|.+.+|+..+..... + -..++..+...+...|-..++...++...+ .
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 223345667888888888877721 0 112233333333333333333333332211 1
Q ss_pred ChhHHHHH-------------------HHHHHh----cCCH---H---HHHHHHhhCC--CCCcccHHHHHHHHHh----
Q 037404 244 NIVSWSTM-------------------VWGYSK----DGDM---E---MAKLLFDRMP--AKTLVPWTIIISGYAE---- 288 (605)
Q Consensus 244 ~~~~~~~l-------------------~~~~~~----~~~~---~---~a~~~~~~~~--~~~~~~~~~l~~~~~~---- 288 (605)
+...|..+ +..+.. .+.. + -+.+.+-.-. -....+|..++..|.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 11111111 111111 1111 1 0111110000 0123446656555443
Q ss_pred ----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 289 ----KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 289 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
..+...|+..+++..+. ..+...+-..+......|++..+...|-.-.... +.+..+|..+.-.+.+..+++.
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~ 868 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEH 868 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHH
Confidence 22334677788777664 3344444444444455566666655554444332 3345556666666777777777
Q ss_pred HHHHHhcCCCC---ChhHHHHHH---------------------------------------HHHHHcCChHHHHHHHHH
Q 037404 365 AMSVFNGMTKK---DLVSWNAML---------------------------------------YGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 365 A~~~~~~~~~~---~~~~~~~l~---------------------------------------~~~~~~~~~~~A~~~~~~ 402 (605)
|...|.....- |...|--.. .....+|+.++-+...++
T Consensus 869 A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~k 948 (1238)
T KOG1127|consen 869 AEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARK 948 (1238)
T ss_pred hhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhh
Confidence 77777665522 222222222 222234444333322222
Q ss_pred HHH---------CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH----HHHHHhhhcCCHHHHHH
Q 037404 403 MKD---------EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG----CMIDLLGRSGRLKEALR 469 (605)
Q Consensus 403 m~~---------~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~ 469 (605)
+-. .|.+-+...|........+.+.+..|.+...+.+.-.....+...|+ .+...++..|.++.|..
T Consensus 949 i~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~ 1028 (1238)
T KOG1127|consen 949 ISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKK 1028 (1238)
T ss_pred hhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhh
Confidence 111 02222334555555555556666666655555443222223334444 34455666677777766
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 470 LVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 470 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
-+......-+..+-..-+.. .-.|+++++.+.|++++.+-.++. .....++......+..+.|...+-+....
T Consensus 1029 a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1029 ASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred hhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 66554323333332222222 335789999999999998753333 45566777777888888898888777764
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.95 E-value=6.1e-06 Score=81.21 Aligned_cols=370 Identities=15% Similarity=0.097 Sum_probs=195.4
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 200 (605)
.+..|.....|+++..+-+. .|.+.-...-.+.++++...| +-+.|-++-+ .+... .+.|..|.+.|.+.
T Consensus 563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~--qd~ka~elk~----sdgd~-laaiqlyika~~p~ 632 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTG--QDEKAAELKE----SDGDG-LAAIQLYIKAGKPA 632 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcC--chhhhhhhcc----ccCcc-HHHHHHHHHcCCch
Confidence 34555556667776655432 233322334456667777777 6666654432 23332 34578888999888
Q ss_pred HHHHHHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhH---------------------------HHHH
Q 037404 201 EARRLFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVS---------------------------WSTM 251 (605)
Q Consensus 201 ~A~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------------------------~~~l 251 (605)
.|......- .-.|......+..++.+..-+++|-.+|+++..++... -...
T Consensus 633 ~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~w 712 (1636)
T KOG3616|consen 633 KAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAW 712 (1636)
T ss_pred HHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHH
Confidence 877654322 33344444445555555444555555555544322110 0111
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (605)
...+...|+++.|...|-+... .-.-+.+-.....|.+|+.+++.+.... .-..-|..+...|+..|+++.|+
T Consensus 713 g~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae 785 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAE 785 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHH
Confidence 2222333444444433332210 1112334445566777777776666542 22334556666777777777777
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 037404 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKD--LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG 409 (605)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 409 (605)
++|-+. ..++-.|.+|.+.|+|++|.++-.+...|. ...|-+-..-+-.+|++.+|.+++-.+. .
T Consensus 786 ~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~ 852 (1636)
T KOG3616|consen 786 ELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----E 852 (1636)
T ss_pred HHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----C
Confidence 766432 234556677777777777777776666442 3445444555666677777766654332 2
Q ss_pred CCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037404 410 PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGA 489 (605)
Q Consensus 410 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 489 (605)
|+ ..+..|-+.|..+..+++.++-.. ..-..+...+..-|...|++..|...|-+.+ -|.+-+..
T Consensus 853 p~-----~aiqmydk~~~~ddmirlv~k~h~----d~l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnm 917 (1636)
T KOG3616|consen 853 PD-----KAIQMYDKHGLDDDMIRLVEKHHG----DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNM 917 (1636)
T ss_pred ch-----HHHHHHHhhCcchHHHHHHHHhCh----hhhhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHH
Confidence 32 234556666766666666554322 1123345566667777777777777776654 24445556
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
|..++-+++|.++.+. ....+.. ..++.+..+.=--+.|.+++.+.
T Consensus 918 yk~s~lw~dayriakt---egg~n~~--k~v~flwaksiggdaavkllnk~ 963 (1636)
T KOG3616|consen 918 YKASELWEDAYRIAKT---EGGANAE--KHVAFLWAKSIGGDAAVKLLNKH 963 (1636)
T ss_pred hhhhhhHHHHHHHHhc---cccccHH--HHHHHHHHHhhCcHHHHHHHHhh
Confidence 6666666665554432 1233333 33333344443345677777653
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=3.4e-06 Score=80.27 Aligned_cols=250 Identities=15% Similarity=0.062 Sum_probs=162.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCC------hhHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN------TNVCNAL 352 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l 352 (605)
...+.....+..++..|++-+....+.. -+..-++....++...|.............+.|...- ...+..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456666777777888888887777643 3333344555567777776666655555544432110 1112223
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a 431 (605)
..+|.+.++++.|+..|.+...+... -....+....+++.+......- +.|... -...-...+.+.|++..|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~A 377 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEA 377 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHH
Confidence 44667778888898888875422111 1122233445555555554443 334331 122225667889999999
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+..|.+++. ..+.|...|....-+|.+.|.+..|++-.+.. ...|+ ...|..=+.++....+++.|.+.|.++++.
T Consensus 378 v~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 378 VKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999988 45778889999999999999999999987776 44554 335555556666678999999999999999
Q ss_pred cCCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+|.+..+...+.++...+.......++.++
T Consensus 456 dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 456 DPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred CchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 999998888888887764333334444444
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=1e-06 Score=78.68 Aligned_cols=325 Identities=12% Similarity=0.048 Sum_probs=201.6
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHH---HHHHhCCChhHHHHHHhhc--CCCCcchH-HHHHHHH
Q 037404 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMI---AGLVKGGELSEARRLFDEM--PERDAVSW-NTILDGY 224 (605)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~~--~~~~~~~~-~~ll~~~ 224 (605)
.-...|...+...| .+.+|+..|....+.|+..|.++. ..|...|+..-|+.-+.+. .+||-..- ..-...+
T Consensus 39 ekhlElGk~lla~~--Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARG--QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 34456788888889 999999999999988888777765 5788899999999888888 56664322 2234567
Q ss_pred HcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 225 AKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 225 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
.+.|.++.|..-|+.+.+.++.- +....++.+.-..++-..+.+ .+..+...|+...|++....+++
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l~~------------ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVLVQ------------QLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHHHH------------HHHHHhcCCchhhHHHHHHHHHh
Confidence 89999999999999887543310 111122222222222222222 24455567888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHH
Q 037404 305 AGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAML 384 (605)
Q Consensus 305 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 384 (605)
.. +.|...+..-..+|...|++..|+.=++.+.+.... +...+..+-..+...|+.+.++...++..+-|+..-.+.-
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 52 445566666677888888888888777776665433 4555666777788888888888877776644432111100
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHhh
Q 037404 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-----VEHYGCMIDLLG 459 (605)
Q Consensus 385 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~ 459 (605)
.| ....+..+.+..|.+ ....++|.++.+..+...+ ..|. ...+..+-.++.
T Consensus 262 -~Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 262 -FY---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred -HH---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeeccc
Confidence 01 111222222222221 2344555566665555544 1222 122334445555
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 460 RSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
..|++.+|++...+. .+.|| +.++.--..+|.-...++.|+.-|+++.+.++++..
T Consensus 319 ~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 319 EDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred ccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 666777777776665 45555 556666677777777777777777777777766643
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=0.0001 Score=75.50 Aligned_cols=144 Identities=15% Similarity=0.266 Sum_probs=112.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
.+..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++..++++ .-.|... ..|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3468899999999999999888866532 36678999999999999999999999888774 5555544 5788
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
-+|++.+++.+..+++. .||......++.-|...|.++.|.-+|... ..|..|+..+...|++..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHH
Confidence 99999999988776653 377777888888899999998888777653 346777888888888887776
Q ss_pred HHHHH
Q 037404 536 VRLQM 540 (605)
Q Consensus 536 ~~~~~ 540 (605)
--.++
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 55544
No 100
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=4.2e-05 Score=78.21 Aligned_cols=276 Identities=14% Similarity=0.141 Sum_probs=151.0
Q ss_pred CChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 037404 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 307 (605)
+.++.|.+.-++..+ +.+|+.+..+-.+.|.+.+|.+-|-+ ..++..|..++....+.|.+++-..++...++..-
T Consensus 1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 344444444443332 24566666666666666666665544 33445566666666666666666666665555544
Q ss_pred CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHH
Q 037404 308 KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGL 387 (605)
Q Consensus 308 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 387 (605)
.|... +.++-+|++.+++.+.+.+.. -|+......+.+-|...|.++.|.-+|. ++.-|..+...+
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTL 1230 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHH
Confidence 44433 245556666666555444331 2344444555555556666666655554 445677777777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (605)
...|++..|...-++. .+..||..+-.+|...+.+.-|. +.. .++.....-..-++..|...|-+++-
T Consensus 1231 V~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeEl 1298 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEEL 1298 (1666)
T ss_pred HHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHH
Confidence 7778777776654432 24567777777777666554432 211 12333445566677888888888888
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-c-C------CCCchHHHHHHHHHhcCChHHHH
Q 037404 468 LRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRL-K-G------SDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 468 ~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p------~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
..+++.. +.+ .....|..|.-.|.+- ++++..+.++-.... + | +....|..+.-.|.+-..|+.|.
T Consensus 1299 Isl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1299 ISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 8887765 432 2233444444444433 344444444433321 1 1 12234555555565555555544
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.89 E-value=2.2e-07 Score=81.01 Aligned_cols=148 Identities=11% Similarity=0.112 Sum_probs=117.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..++..|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3467888888876554433221 11 022346677888888888877 456788899999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 464 LKEALRLVQSM-PVEP-NAIIWGTLLGAC-RKHNA--VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..++
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 4455 566777888764 67777 5999999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 037404 539 QMKKTRA 545 (605)
Q Consensus 539 ~~~~~~~ 545 (605)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9998643
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=2.3e-07 Score=84.68 Aligned_cols=182 Identities=10% Similarity=0.012 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DL---VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFV 416 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~ 416 (605)
....+..++..+...|+++.|...|+++... ++ ..+..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4455666666777777777777777765421 22 34556666777777777777777777664211111 1334
Q ss_pred HHHHHhccc--------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037404 417 GVLCACTHA--------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488 (605)
Q Consensus 417 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 488 (605)
.+..++... |+.++|.+.++.+... .+-+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 444444433 5666677777766652 2222222222211100 00000 001124567
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+.+.|++++|...++++.+..|+++ ..+..++.++...|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999877654 68999999999999999999999988764
No 103
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=1.9e-06 Score=87.70 Aligned_cols=446 Identities=13% Similarity=0.013 Sum_probs=240.5
Q ss_pred cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC-CCCcchhhHHHHHH
Q 037404 82 LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY-FGDIFVPNSLIDSY 160 (605)
Q Consensus 82 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~ 160 (605)
.|..|...|+...+...|...|+...+.+.. |..........+++..+++.|..+.-..-+... ..-..-|....-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4666666666666777777777777665322 555566666777777777777776322221110 00111222233344
Q ss_pred HhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCCCcc-hHHHHHHHHHcCCChHHHH
Q 037404 161 SKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEM--PERDAV-SWNTILDGYAKAGEMNLAF 234 (605)
Q Consensus 161 ~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~-~~~~ll~~~~~~~~~~~a~ 234 (605)
...+ +...+..-|+.... .|...|..+..+|.+.|++..|+++|.+. .+|+.. .---..-.-+..|.+.++.
T Consensus 573 Lea~--n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAH--NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCcc--chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 4555 66666666665543 35556777777777777777777777766 344321 1111222334567777777
Q ss_pred HHHHhCCC----------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHH-HHHHHHHhC-CC---hHHHHHHH
Q 037404 235 ELFEKIPH----------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWT-IIISGYAEK-GM---AKEAARLY 299 (605)
Q Consensus 235 ~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~l~~~~~~~-~~---~~~a~~~~ 299 (605)
..+..... .-..++-.+...+.-.|-..+|.++++...+ .+. .+....+.. -. ...|..+|
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie----~f~~~l~h~~~~~~~~Wi~asdac~~f 726 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE----SFIVSLIHSLQSDRLQWIVASDACYIF 726 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH----HHHHHHHHhhhhhHHHHHHHhHHHHHH
Confidence 76655442 0112222333333333333344444433211 110 011100000 00 11222222
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCch---H---HHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cC----ChHHH
Q 037404 300 DQMEEAGLKPDDGTLISILAACAESGLL---G---LGMKVHASINKYRFKCNTNVCNALVDMYAK----CG----SLDNA 365 (605)
Q Consensus 300 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~A 365 (605)
-+.. .. .|+.+....+..-..+.+.. + .+.+.+-.-.+ ...++..|..|+..|.+ .| +...|
T Consensus 727 ~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~A 802 (1238)
T KOG1127|consen 727 SQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTA 802 (1238)
T ss_pred HHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHH
Confidence 2222 11 23333333333323333322 1 11111111111 11123344444433332 22 33467
Q ss_pred HHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 366 MSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 366 ~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
...+.+.. ..+...|+.+.-. ...|++.-|...|-+-.... +-...+|..+.-.|....+++.|...|.....
T Consensus 803 i~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS-- 878 (1238)
T KOG1127|consen 803 IRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS-- 878 (1238)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhh--
Confidence 77776554 4466778777655 66678887777777665542 33566788888889999999999999998865
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHH----------HHH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPNAIIWGTLLGACRKHNAVELAEEV----------LDC 505 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~----------~~~ 505 (605)
-.+.+...|..........|+.-++..+|..- +.-|+...|..........|++++-+.. +++
T Consensus 879 LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~ 958 (1238)
T KOG1127|consen 879 LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSY 958 (1238)
T ss_pred cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHH
Confidence 23335555655555556778888888888752 3345555555555555566665554433 444
Q ss_pred HHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 506 LIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 506 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.....|+...+|...+..+.+.+.+.+|.++..+.+.
T Consensus 959 yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 959 YFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred HHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555788889999999999999999999988887653
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.2e-05 Score=89.42 Aligned_cols=355 Identities=13% Similarity=0.027 Sum_probs=224.8
Q ss_pred HHHHHhCCChhHHHHHHhhcCCCCcc--hHHHHHHHHHcCCChHHHHHHHHhCCC----CChhHHHHHHHHHHhcCCHHH
Q 037404 190 IAGLVKGGELSEARRLFDEMPERDAV--SWNTILDGYAKAGEMNLAFELFEKIPH----RNIVSWSTMVWGYSKDGDMEM 263 (605)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~ 263 (605)
...+...|++.+|..........+.. ............|+++.+..+++.+.. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34455666666666655554332211 111122334557788888888777631 233333445556678899999
Q ss_pred HHHHHhhCCC----CC---ccc-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCch
Q 037404 264 AKLLFDRMPA----KT---LVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLISILAACAESGLL 327 (605)
Q Consensus 264 a~~~~~~~~~----~~---~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~ 327 (605)
+...+..... .+ ... ...+...+...|++++|...+++..+.-...+. .....+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 9888876421 11 111 222344566899999999999998763211221 2334555567789999
Q ss_pred HHHHHHHHHHHHcCCC---C--ChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----ChhHHHHHHHHHHHcC
Q 037404 328 GLGMKVHASINKYRFK---C--NTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------K----DLVSWNAMLYGLAMHG 391 (605)
Q Consensus 328 ~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~ 391 (605)
+.|...+......... + .......+...+...|+++.|...+++... + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 9999998887643111 1 123455667788899999999998876441 1 1123445556677789
Q ss_pred ChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH-----HHHHHHhhhcC
Q 037404 392 QGEKALGLFSRMKDE--GFGPD--KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY-----GCMIDLLGRSG 462 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~--g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g 462 (605)
++++|...+.+.... ...+. ...+..+.......|+++.|...+..+............+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 999999999887652 11222 2344455667788999999999998885521111111111 11224455689
Q ss_pred CHHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCchHHHHHHHHHhcCCh
Q 037404 463 RLKEALRLVQSMPV--EPNA----IIWGTLLGACRKHNAVELAEEVLDCLIRLKG------SDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 463 ~~~~A~~~~~~~~~--~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~ 530 (605)
+.+.|.+.+..... .... ..+..+..++...|++++|...++++..... ....++..++.++.+.|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999999877621 1111 1234567778889999999999999987621 1224677888999999999
Q ss_pred HHHHHHHHHHHhCC
Q 037404 531 NKVANVRLQMKKTR 544 (605)
Q Consensus 531 ~~A~~~~~~~~~~~ 544 (605)
++|...+.++.+..
T Consensus 748 ~~A~~~L~~Al~la 761 (903)
T PRK04841 748 SEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.83 E-value=0.00019 Score=79.83 Aligned_cols=397 Identities=13% Similarity=0.046 Sum_probs=240.5
Q ss_pred HHHHHHHHHHhCCCC--C-C----cccHHHHHHHhhcc----CCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC
Q 037404 98 QAFRVFLDMQEKGVF--T-D----NFTYPFLLKACNGK----NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 98 ~a~~~~~~m~~~~~~--p-~----~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 166 (605)
.+..+++.+...|.. + + .+.|+.+++-+... .+.+....++. .....+...|
T Consensus 293 ~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~lh~---------------raa~~~~~~g-- 355 (903)
T PRK04841 293 NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPELHR---------------AAAEAWLAQG-- 355 (903)
T ss_pred cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHHHH---------------HHHHHHHHCC--
Confidence 345667777666641 1 1 24567776654322 12223333332 2333455556
Q ss_pred ChHHHHHHHhccCCCCee--hHHHHHHHHHhCCChhHHHHHHhhcC----CCCcchHHHHHHHHHcCCChHHHHHHHHhC
Q 037404 167 GVSLAKKLFMSMGERDIV--SWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTILDGYAKAGEMNLAFELFEKI 240 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 240 (605)
++..|..........+.. ............|+++.+...+..+. ..+..........+...|+++++..++...
T Consensus 356 ~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a 435 (903)
T PRK04841 356 FPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARA 435 (903)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666665555544432111 11122234556788888888877762 122333334445556788999988887654
Q ss_pred CC----C----C----hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCc----ccHHHHHHHHHhCCChHHHHHHHH
Q 037404 241 PH----R----N----IVSWSTMVWGYSKDGDMEMAKLLFDRMPA----KTL----VPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 241 ~~----~----~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
.. . + ......+...+...|+++.|...+++... .+. ...+.+...+...|++++|...+.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~ 515 (903)
T PRK04841 436 EQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQ 515 (903)
T ss_pred HHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 21 1 1 11223344566789999999998887543 111 114556667788999999999998
Q ss_pred HHHHcCC---CCC--HHHHHHHHHHHHccCchHHHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCChHHHHHH
Q 037404 301 QMEEAGL---KPD--DGTLISILAACAESGLLGLGMKVHASINKY----RFK--C-NTNVCNALVDMYAKCGSLDNAMSV 368 (605)
Q Consensus 301 ~m~~~~~---~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~ 368 (605)
+.....- .+. ..++..+...+...|+++.|...+.+.... +.. + ....+..+...+...|++++|...
T Consensus 516 ~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 516 QTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8865311 111 234455566788899999999988876542 221 1 123345566677888999999998
Q ss_pred HhcCCC------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHhcccCCHHHHHHH
Q 037404 369 FNGMTK------K--DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG--FGPDKY--TF--VGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 369 ~~~~~~------~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~ 434 (605)
+.+... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+...|+.+.|..+
T Consensus 596 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 596 ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW 675 (903)
T ss_pred HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 886542 1 12344456667888999999999998875421 111110 10 1112344558899999999
Q ss_pred HHHhHHhhCCCCc---hHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 435 FYSMERDYGILPQ---VEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 435 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
+...... ..... ...+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.++|...+
T Consensus 676 l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L 754 (903)
T PRK04841 676 LRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVL 754 (903)
T ss_pred HHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8776431 11111 112356777889999999999998876 22222 235666778889999999999999
Q ss_pred HHHHhhcCC
Q 037404 504 DCLIRLKGS 512 (605)
Q Consensus 504 ~~~~~~~p~ 512 (605)
.++++....
T Consensus 755 ~~Al~la~~ 763 (903)
T PRK04841 755 LEALKLANR 763 (903)
T ss_pred HHHHHHhCc
Confidence 999998643
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=1.7e-06 Score=75.86 Aligned_cols=305 Identities=13% Similarity=0.082 Sum_probs=137.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc--HH-HHHHHHHhCC
Q 037404 217 WNTILDGYAKAGEMNLAFELFEKIPHR---NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP--WT-IIISGYAEKG 290 (605)
Q Consensus 217 ~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~-~l~~~~~~~~ 290 (605)
+..++..+.+..++.+|++++..-.+. +....+.|..+|....++..|...++++...-+.- |. --.+.+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 445555556666677777666544332 33445666666666667777776666654332221 21 1233444556
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGT--LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSV 368 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 368 (605)
.+..|+++...|.+. |+... ...-.......+++..+..+.++.-..| +..+.+...-...+.|+++.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 666666666655432 11111 1111111223444444444444433211 223333333334455555555555
Q ss_pred HhcCCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 369 FNGMTKK----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT-FVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 369 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
|+...+- ....|+.-+. ..+.|+++.|+++..+++++|++-.+.. ....... ...+.+..-..+....
T Consensus 167 FqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sa----- 239 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSA----- 239 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHH-----
Confidence 5544321 2233433332 2334555555555555555554321100 0000000 0000000000000000
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP----VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
-...+|.-...+.+.|+++.|.+.+..|+ ...|+.|+..+.-.=. .+++.+..+-+.-+++.+|-.+.++..
T Consensus 240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP~ETFAN 315 (459)
T KOG4340|consen 240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFPPETFAN 315 (459)
T ss_pred ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCChHHHHH
Confidence 01112222233456667777777666663 2345555554432221 234444555555556666666666666
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 037404 520 LSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~ 538 (605)
+.-+|++..-++-|..++-
T Consensus 316 lLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HHHHHhhhHHHhHHHHHHh
Confidence 6667777766666666654
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=1.9e-07 Score=76.88 Aligned_cols=94 Identities=12% Similarity=-0.043 Sum_probs=76.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+..+...+...|++++|...|+.. ...| +...+..++.++...|++++|...|+++.+.+|.++..+..++.++...|
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 555677788888888888888877 3344 56678888888888888888888888888888888888888888888888
Q ss_pred ChHHHHHHHHHHHhCC
Q 037404 529 DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~ 544 (605)
++++|++.+++..+..
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 8888888888888754
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.77 E-value=9.4e-07 Score=92.82 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=169.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--------DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
+...|-..|......++.+.|++++++..+. -...|.++++.....|.-+...++|+++.+. .-....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4566778888889999999999999877622 3468888888888889889999999999884 22234588
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACRK 492 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~ 492 (605)
.|...|.+.+..++|.++++.|.++++ .....|..++..+.++++-+.|..++.++ +.+.......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999655 67788999999999999999999999887 222244566666777789
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
.|+.++++.+|+..+...|...+.|..+++.-.+.|+.+.++.+|+++...++++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999987754
No 109
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=1.7e-05 Score=77.55 Aligned_cols=192 Identities=11% Similarity=0.044 Sum_probs=103.6
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----Ch--hHHHHHHHHHH
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK-----DL--VSWNAMLYGLA 388 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~l~~~~~ 388 (605)
.+...+...|+++.|...++...+.. +.+...+..+..++...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666666544 223455666666777777777777777655421 11 23445666777
Q ss_pred HcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHhcccCCHHHHHHH--HHHhHHhhCCC--CchHHHHHHHHHhhh
Q 037404 389 MHGQGEKALGLFSRMKDEGF-GPDKYTF-V--GVLCACTHAGFIDKGVQY--FYSMERDYGIL--PQVEHYGCMIDLLGR 460 (605)
Q Consensus 389 ~~~~~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~g~~~~a~~~--~~~~~~~~~~~--~~~~~~~~l~~~~~~ 460 (605)
..|++++|..++++...... .+..... + .++.-+...|....+..+ +...... ..+ ...........++..
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhc
Confidence 77888888888877654321 1111111 1 223333334433322222 1111110 111 111222346667778
Q ss_pred cCCHHHHHHHHHhCC--CCC---C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 461 SGRLKEALRLVQSMP--VEP---N------AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 461 ~g~~~~A~~~~~~~~--~~p---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.|+.++|..+++.+. ... . .........++...|+.++|.+.+..++..
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888887761 111 1 112222334566889999999999988875
No 110
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.75 E-value=8.3e-07 Score=85.07 Aligned_cols=244 Identities=13% Similarity=0.067 Sum_probs=148.5
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 367 (605)
+.|++.+|.-.|+...+.. +-+...|..|....+..++-..|+..+++..+.. +.+..+.-.|.-.|...|.-.+|.+
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence 4444444444444444432 2223344444444444444444444444444433 1234444445555555555555555
Q ss_pred HHhcCCCCCh-hHHHHHH---------HHHHHcCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 368 VFNGMTKKDL-VSWNAML---------YGLAMHGQGEKALGLFSRM-KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 368 ~~~~~~~~~~-~~~~~l~---------~~~~~~~~~~~A~~~~~~m-~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
.++.-....+ ..|.... ..+..........++|-++ ...+..+|......|.-.|.-.|++++|+..|+
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 5543321000 0000000 0111111223344444444 445544677777777777899999999999999
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS-- 512 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 512 (605)
.+.. --+-|..+||.|+-.++...+.++|+..|.++ .++|. +.+...|+-+|...|.+++|...|-.++.+.+.
T Consensus 455 ~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 455 AALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 9976 33446789999999999999999999999998 77888 447888999999999999999999999987544
Q ss_pred ---C-----CchHHHHHHHHHhcCChHHHHH
Q 037404 513 ---D-----PGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 513 ---~-----~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
. ..+|..|-.++...++.|-+.+
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 1467777777777777764444
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=3.9e-07 Score=75.07 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=100.6
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037404 398 GLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV 476 (605)
Q Consensus 398 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 476 (605)
.++++..+ +.|+. +..+..++...|++++|...|+.+.. --+.+...+..++.++.+.|++++|...|+++ ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45555555 34543 44567778899999999999999876 44557888999999999999999999999988 33
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 477 E-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 477 ~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
. .+...+..++.++...|++++|+..++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 4 4677889999999999999999999999999999999999888776543
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.73 E-value=1.3e-06 Score=75.74 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=66.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKH 493 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 493 (605)
..+-..+...|+-+....+...... ..+.+......++....+.|++.+|...+.+. .-++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 3333444445555555544444332 23334444444555555555555555555555 3334455555555555555
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|++++|..-|.++.++.|.++.++..++..|.-.|+++.|..++......
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 55555555555555555555555555555555555555555555555543
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=1.2e-06 Score=86.17 Aligned_cols=213 Identities=10% Similarity=0.010 Sum_probs=165.9
Q ss_pred HHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCC
Q 037404 315 ISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 392 (605)
..+...+.+.|-...|..++++.. .+.-.+.+|+..|+..+|..+..+.. ++++..|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 445566677777777877777543 45667888888888888888776544 4577788888887777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+ -.+....+|-.+.-+..+.++++.|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 88888887764432 112222233457889999999988766 234456788888888999999999999998
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 473 SM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 473 ~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.. ...|| ...|+.+..+|.+.|+-.+|...++++++-+-.+..+|....-+..+.|.+++|++.+.++.+...
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 87 55666 569999999999999999999999999999888899999999999999999999999999987543
No 114
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.67 E-value=9e-07 Score=71.34 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=86.7
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+......+...+...|++++|.++|+-. .+.| +...|..|..++...|++++|+..|..+..++|++|..+..++.++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4455666777888999999999999988 4445 4668889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037404 525 AATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~ 543 (605)
...|+.+.|++-|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999974
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=3e-06 Score=87.75 Aligned_cols=133 Identities=13% Similarity=0.068 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
++..+..|.....+.|.+++|..+++...+ +.|+. .....+...+.+.+++++|...+++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 355555666666666666666666666665 34543 3344455556666666666666666654 333345555556
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
..++.+.|++++|..+|+++ ...|+ ..++..+..++...|+.++|...|+++.+...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 66666666666666666665 12222 445556666666666666666666666665433
No 116
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=1.8e-05 Score=74.29 Aligned_cols=177 Identities=12% Similarity=0.122 Sum_probs=103.7
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 362 LDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQG--EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 362 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
+++++..++++. +++..+|+.....+.+.|+. ++++..++++.+.. +-|..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 455555555443 22333444443333344432 45566666666532 2244556666666666666777777777
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHH
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRS---GR----LKEALRLVQSM-PVEP-NAIIWGTLLGACRKH----NAVELAEEVL 503 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~ 503 (605)
++++ ..+-+...|+.....+.+. |. .++++++..++ ...| |...|+.+...+... +...+|..++
T Consensus 167 ~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 7666 2233445555544444333 22 24556665444 3334 455777777777662 4456788888
Q ss_pred HHHHhhcCCCCchHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 037404 504 DCLIRLKGSDPGNYTMLSNIFAATG------------------DWNKVANVRLQMK 541 (605)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~ 541 (605)
.++...+|.++.++..|+++|.... ..++|.++++.+.
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 8888888888989999999997643 2366888887774
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.57 E-value=9.5e-06 Score=70.43 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
|... ..+...+...|+-+....+..+.... -.-+............+.|++..|+..+.++.. .-++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHH
Confidence 4444 55566777788888877777765432 123444555577788888999999999998877 6778888999999
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
-+|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....+.+..+-..++.+....|++++|
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999998888777 4333 4667888888888899999999999998887777888888999999999999999
Q ss_pred HHHHHH
Q 037404 534 ANVRLQ 539 (605)
Q Consensus 534 ~~~~~~ 539 (605)
..+..+
T Consensus 222 ~~i~~~ 227 (257)
T COG5010 222 EDIAVQ 227 (257)
T ss_pred Hhhccc
Confidence 887643
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.57 E-value=2.2e-05 Score=74.27 Aligned_cols=118 Identities=18% Similarity=0.198 Sum_probs=70.9
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A 499 (605)
+...|.+++|+..+..++. ..+.|+..+....+.+.+.|+.++|.+.++++ ...|+ ....-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4455666666666666655 34445555555666666666666666666665 34444 34445556666666666666
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+..+......+|++|..|..|+.+|...|+..+|..-+.+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 666666666666666666666666666665555555554444
No 119
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.57 E-value=1.2e-06 Score=71.98 Aligned_cols=98 Identities=23% Similarity=0.273 Sum_probs=81.4
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+......++..+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++.+.+|.++..+..++.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3455667777888889999999888887 3333 5677888888888899999999999999998999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037404 525 AATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|...+++..+..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 96 LALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999888753
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=3.7e-05 Score=76.13 Aligned_cols=188 Identities=13% Similarity=0.139 Sum_probs=158.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
.+|--..-..+...+...|-...|..+|+++ ..|...+.+|+..|+..+|..+..+-.++ +|++.-|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 3444555667888999999999999999964 57788899999999999999999888873 7888989888888
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A 499 (605)
.....-+++|.++.+....+ .-..+.....+.++++++.+.++.- .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888888998888776552 2233344455689999999999875 4444 456888888888999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+.|...+..+|++...|+.+.-+|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999999976
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00012 Score=63.77 Aligned_cols=156 Identities=15% Similarity=0.082 Sum_probs=93.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----cCC
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH----AGF 427 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~ 427 (605)
-...|+..|++++|++..+... +......=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+ .+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 3445666777777777766622 2222222234455666777777777777752 245566655555443 345
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNA-VELAEEVLD 504 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~ 504 (605)
+..|.-+|+++.+ ..+|+..+.+..+.++...|++++|..++++. +...++.++..++-.-...|. .+.-.+.+.
T Consensus 189 ~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6777777777765 46677777777777777777777777777766 334455565555544444443 344456666
Q ss_pred HHHhhcCCCC
Q 037404 505 CLIRLKGSDP 514 (605)
Q Consensus 505 ~~~~~~p~~~ 514 (605)
+.....|.++
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 6666666655
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.55 E-value=1.4e-05 Score=69.71 Aligned_cols=155 Identities=9% Similarity=0.044 Sum_probs=113.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
+-.|...|+++.+....+.+..+. ..+...++.++++..+++..+.+ +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666777666554443322211 01123566778888888877753 456778888889999999999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHh-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLL-GRSGR--LKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
..|+++.+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999877 3345677888888864 67777 59999999988 4445 56788888899999999999999999999
Q ss_pred hhcCCCCchHH
Q 037404 508 RLKGSDPGNYT 518 (605)
Q Consensus 508 ~~~p~~~~~~~ 518 (605)
+..|.+..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99877665443
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.53 E-value=1.9e-05 Score=82.60 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=27.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 370 (605)
.+..+..+|.+.|+.+++..+++++.+.. +.|+.+.|.+...|... ++++|.+++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 44444445555555555555555555444 23444444444444444 4444444443
No 124
>PF12854 PPR_1: PPR repeat
Probab=98.52 E-value=9.2e-08 Score=55.69 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=24.6
Q ss_pred CCCCCCcchHHHHHHHhccCChhHHHHHhcccC
Q 037404 44 DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ 76 (605)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 76 (605)
|+.||..+|+.||+.||+.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 667777777777777777777777777777763
No 125
>PLN02789 farnesyltranstransferase
Probab=98.51 E-value=2.6e-05 Score=73.22 Aligned_cols=189 Identities=11% Similarity=0.085 Sum_probs=139.2
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHG-QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF- 427 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 427 (605)
-..+...+..++|+....++... +..+|+.....+...| ++++++..++++.+.+ +-+..+|+.....+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 33445567778888888876633 4456665556666667 6799999999999864 2344556655545555665
Q ss_pred -HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc---CC----HH
Q 037404 428 -IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKH---NA----VE 497 (605)
Q Consensus 428 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~---g~----~~ 497 (605)
.+++..+++++.+ ..+-+..+|+....++.+.|+++++++.++++ .. ..|...|+.....+.+. |. .+
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3678888888877 45567889999999999999999999999998 33 34566787777666554 22 35
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 544 (605)
++..+..+++..+|.+..+|..+..++.. .++..+|.+...+..+.+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 78888899999999999999999999988 345677888888876643
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.51 E-value=9.6e-06 Score=73.95 Aligned_cols=182 Identities=12% Similarity=0.026 Sum_probs=128.1
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Chh---HH
Q 037404 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKC--NTNVCNALVDMYAKCGSLDNAMSVFNGMTKK---DLV---SW 380 (605)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~---~~ 380 (605)
.....+......+...|+++.|...++.+....... ....+..+..++...|++++|...++++.+. +.. ++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 345567777888999999999999999988765321 1246777889999999999999999988632 222 45
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 381 NAMLYGLAMH--------GQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 381 ~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
..+..++... |++++|.+.++++... .|+.. ....+... ..+... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~--------------~~~~~~-----~~~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM--------------DYLRNR-----LAGKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH--------------HHHHHH-----HHHHH
Confidence 5556666654 7889999999999875 45432 22222111 001000 00112
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PV---EP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
..+...+.+.|++++|...+++. .. .| ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 35667789999999999999887 22 23 356788899999999999999999888877655
No 127
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=1.9e-05 Score=68.02 Aligned_cols=186 Identities=11% Similarity=0.103 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHHH---cC-CCCChh-HHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHH---HHHHHHHcCChHHH
Q 037404 325 GLLGLGMKVHASINK---YR-FKCNTN-VCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA---MLYGLAMHGQGEKA 396 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A 396 (605)
.+.++..+++..+.. .| ..++.. +|..++-+....|+.+.|..+++.+...-+.++.. -...+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345556665555542 22 222222 23334444445555555555555444221111111 11123334555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 037404 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P 475 (605)
Q Consensus 397 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 475 (605)
+++++.+.+.+ +.|..++-.=+...-..|+..+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++ -
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 55555555543 22333444334344444554555555555544 34455555555555555555555555555555 2
Q ss_pred CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCC
Q 037404 476 VEP-NAIIWGTLLGACRKHN---AVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 476 ~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~ 513 (605)
+.| ++..+..+...+.-.| +.+.|.++|.+++++.|.+
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 222 2333334443332222 4445555555555555533
No 128
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=2.9e-05 Score=67.35 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=116.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh---
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR--- 460 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 460 (605)
...|+..|++++|++..+... +......=+..+.+..+.+-|.+.++.|.+ -.+..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~----ided~tLtQLA~awv~la~ 184 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ----IDEDATLTQLAQAWVKLAT 184 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchHHHHHHHHHHHHHHhc
Confidence 456889999999999888621 223333334456788889999999999976 2445566666666543
Q ss_pred -cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH-HH
Q 037404 461 -SGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA-NV 536 (605)
Q Consensus 461 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~ 536 (605)
.+.+.+|.-+|+++ +..|+..+.+..+.++...|++++|..++++++..++.+|.++..++-+-...|+-.++. ..
T Consensus 185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 45789999999999 478999999999999999999999999999999999999999999998888888876654 34
Q ss_pred HHHHHh
Q 037404 537 RLQMKK 542 (605)
Q Consensus 537 ~~~~~~ 542 (605)
+.+...
T Consensus 265 l~QLk~ 270 (299)
T KOG3081|consen 265 LSQLKL 270 (299)
T ss_pred HHHHHh
Confidence 444443
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=5.3e-05 Score=65.30 Aligned_cols=163 Identities=13% Similarity=0.168 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
.|..++-+....|+.+.|...++++... + |... .-..-...+...|.+++|.++++.+.+ ..+.|..++..=+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 4445555666677777888888877765 2 4332 211112234556778888888888776 335556666655555
Q ss_pred hhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC---ChHH
Q 037404 458 LGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG---DWNK 532 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~ 532 (605)
.-..|+--+|++-+.+. .+..|...|.-+...|...|++++|.-.+++++-..|.++-.+..+++++.-.| ++.-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 66667666666665554 445677788888888888888888888888888778888877777777766555 4556
Q ss_pred HHHHHHHHHhCCC
Q 037404 533 VANVRLQMKKTRA 545 (605)
Q Consensus 533 A~~~~~~~~~~~~ 545 (605)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 7777777777554
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=9e-05 Score=70.26 Aligned_cols=147 Identities=15% Similarity=0.112 Sum_probs=118.0
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCM 454 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 454 (605)
...+.-....+...|++++|+..++.+... .|+. .........+...|+.++|.+.++++.. ..|+ ......+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444445566789999999999998885 5554 4455566789999999999999999976 3454 6677789
Q ss_pred HHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
..+|.+.|++.+|..+++.. ..+.|+..|..|.++|...|+..++... .++.|.-.|++++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 99999999999999999987 4556788999999999999988776654 4557788999999
Q ss_pred HHHHHHHHHhCCC
Q 037404 533 VANVRLQMKKTRA 545 (605)
Q Consensus 533 A~~~~~~~~~~~~ 545 (605)
|+..+....++.-
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988643
No 131
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.43 E-value=5.2e-05 Score=80.34 Aligned_cols=220 Identities=15% Similarity=0.118 Sum_probs=151.5
Q ss_pred cchHHHHHHHHHcCCChHHHHHHHHhCCC--------CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ccc-cHHHHH
Q 037404 214 AVSWNTILDGYAKAGEMNLAFELFEKIPH--------RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK-TLV-PWTIII 283 (605)
Q Consensus 214 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~l~ 283 (605)
...|..-|......++.++|.++.+++.. .-...|.++++.-..-|.-+...++|+++.+- ++. .|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34566667777777788888877777653 12356777777777777777778888877542 222 377788
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCCh
Q 037404 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK-CNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~ 362 (605)
..|.+.+.+++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+.-.. -........++.-.+.|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888888888888888888765 3345567777777777877778888888777664322 1344556666777788888
Q ss_pred HHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHH
Q 037404 363 DNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 363 ~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~ 434 (605)
+.++.+|+... ++-...|+..++.-.++|+.+.+..+|++....++.|-. ..|...+..-.+.|+-..++.+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 88888888766 334578888888888888888888888888887776643 3455555544444554444333
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.42 E-value=4.4e-07 Score=52.83 Aligned_cols=32 Identities=38% Similarity=0.631 Sum_probs=23.2
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777766
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.40 E-value=7.3e-06 Score=78.39 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=97.7
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRK 492 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~ 492 (605)
...++..+...++++.|.++++++.+. .|+ ....++..+...++-.+|.+++.+. ..+.+...+..-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445566666777888888888887662 244 3445677777777888888888776 333456677777788899
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.++++.|+.+.+++.+..|.+...|..|+.+|...|++++|+-.++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999998886
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.36 E-value=0.00011 Score=76.33 Aligned_cols=141 Identities=13% Similarity=0.079 Sum_probs=113.3
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 037404 342 FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVG 417 (605)
Q Consensus 342 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ 417 (605)
.+.+...+..|.....+.|.+++|+.+++.+. +.+......++..+.+.+++++|+..+++.... .|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45568888899999999999999999999776 335567778888999999999999999999885 454 455667
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTL 486 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 486 (605)
+..++.+.|++++|..+|+++.. ..+-+..++..+...+...|+.++|...|++. ...|-...|+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 77888999999999999999987 44455788889999999999999999999987 223444444443
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.35 E-value=1.8e-05 Score=64.88 Aligned_cols=114 Identities=11% Similarity=0.055 Sum_probs=89.3
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC
Q 037404 399 LFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV 476 (605)
Q Consensus 399 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 476 (605)
.+++.... .|+ ......+...+...|++++|...++.+.. ..+.+...+..+...+.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555543 443 34456667778889999999999998877 34557788888999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 477 EP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 477 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
.| +...+..+...+...|++++|...++++++..|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 34 56677888889999999999999999999999987763
No 136
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=5.9e-05 Score=69.67 Aligned_cols=165 Identities=12% Similarity=0.033 Sum_probs=120.3
Q ss_pred hHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHH------
Q 037404 378 VSWNAM-LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEH------ 450 (605)
Q Consensus 378 ~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------ 450 (605)
..|..+ ..++...|++++|...-....+.. ..+......--.++...++.+.|...|++.+. ..|+...
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~ 244 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASM 244 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhh
Confidence 344443 345677889999888777766642 11222222222345667888899999888754 4454322
Q ss_pred -------HHHHHHHhhhcCCHHHHHHHHHhC-CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchH
Q 037404 451 -------YGCMIDLLGRSGRLKEALRLVQSM-PVE-----PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 451 -------~~~l~~~~~~~g~~~~A~~~~~~~-~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
+..=.+-..+.|++.+|.+.|.+. .+. |+...|.....+..+.|+.++|+.-..++++++|.-...|
T Consensus 245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikal 324 (486)
T KOG0550|consen 245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKAL 324 (486)
T ss_pred hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHH
Confidence 222234567889999999999887 444 4555676777778899999999999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
..-+.++...++|++|++-+++..+...+
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999986443
No 137
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.26 E-value=3.3e-05 Score=64.01 Aligned_cols=115 Identities=16% Similarity=0.127 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 037404 425 AGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA----IIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 498 (605)
.++...+...++.+..+.+-.+ .....-.+...+...|++++|...|+.. ...|+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666666665321111 1223334556666677777777777666 222332 233345566677777777
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
|+..++.. ...+..+..+...+++|.+.|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 223344556667777777777777777777654
No 138
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.26 E-value=8.9e-06 Score=72.04 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=59.7
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
.-+.+.+++.+|+..|.++ .+.| |++.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 3345666777777777666 4443 4555666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh
Q 037404 534 ANVRLQMKK 542 (605)
Q Consensus 534 ~~~~~~~~~ 542 (605)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 777776665
No 139
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.26 E-value=1.5e-06 Score=64.12 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHH
Q 037404 461 SGRLKEALRLVQSM-PVEP---NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 461 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 536 (605)
.|+++.|+.+++++ ...| +...+..++.++.+.|++++|..++++ .+.+|.++.....++.++.+.|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777788877777 2222 445566678888888888888888888 666777777777888888888888888888
Q ss_pred HHHH
Q 037404 537 RLQM 540 (605)
Q Consensus 537 ~~~~ 540 (605)
+++.
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8763
No 140
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.24 E-value=3.4e-06 Score=59.58 Aligned_cols=65 Identities=22% Similarity=0.201 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG-DWNKVANVRLQMKKT 543 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 543 (605)
++.+|..++..+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788899999999999999999999999999999999999999999999 799999999998874
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=2.3e-05 Score=62.65 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=68.9
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLS 521 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 521 (605)
++..++..+.+.|++++|.+.|.++ ...|+ ...+..++.++.+.|++++|...++++....|.+ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555666777778888888777776 22232 3355567777888888888888888888877664 45677788
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 037404 522 NIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++.+.|++++|...++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 88888888888888888887754
No 142
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.20 E-value=0.0016 Score=68.84 Aligned_cols=232 Identities=8% Similarity=0.017 Sum_probs=109.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037404 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321 (605)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 321 (605)
...+..|+..|...+++++|.++.+...+.++.. |-.+...+.+.++.+.+..+ .+ +...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NL---------------IDSF 93 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------hhhc
Confidence 3445555555555555555555555443322221 33333344444444433333 11 1122
Q ss_pred HccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALG 398 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~ 398 (605)
....++..+..++..+.+.+ .+...+..+..+|-+.|+.++|..+++++. +.|+.+.|-+...|... +.++|+.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~ 170 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAIT 170 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHH
Confidence 22223333333333333322 133455566666666666666666666554 33555666666666666 6666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP 478 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 478 (605)
++.+.... +...+++..+.++|.++.. ..+.+...+..+....... .+..-
T Consensus 171 m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~ 221 (906)
T PRK14720 171 YLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTR 221 (906)
T ss_pred HHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccch
Confidence 66655543 3444455556666666554 2222222222222211111 01111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
-..++.-+...|...++++++..+++.+++.+|.|..+...++.+|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22333334444555555666666666666666665555555555554
No 143
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.17 E-value=3.5e-06 Score=50.05 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=30.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDN 115 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 115 (605)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988874
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.17 E-value=2.3e-05 Score=59.64 Aligned_cols=94 Identities=18% Similarity=0.171 Sum_probs=79.0
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+..++..+...|++++|.+.++++ ...|+ ...+..+...+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 456677788889999999999886 33443 4677778888888999999999999999999998889999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 037404 529 DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~ 544 (605)
++++|...+++..+..
T Consensus 83 ~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 83 KYEEALEAYEKALELD 98 (100)
T ss_pred hHHHHHHHHHHHHccC
Confidence 9999999998887643
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.16 E-value=8.3e-05 Score=71.30 Aligned_cols=127 Identities=11% Similarity=0.068 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 426 (605)
.....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|++++++..+.. +-+...+..-...+.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4445566677777888889999988887777777778888888888888998888888642 335555555566788888
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCC
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV 476 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 476 (605)
+++.|..+.+++.. -.+-+..+|..|+.+|.+.|+++.|+-.+..++.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 89999999988876 3444566888899999999999999988888853
No 146
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.16 E-value=0.0087 Score=57.87 Aligned_cols=402 Identities=13% Similarity=0.114 Sum_probs=198.0
Q ss_pred CCCCcchHHHHHHHhccCChhHHHHHhcccCC---CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHH
Q 037404 46 QRDPYIAPKLISSLALCRQMGLAIKVFNDIQD---PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLL 122 (605)
Q Consensus 46 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 122 (605)
+-|...|+.||+-+..+ ..+++++.++++.. .....|..-|..-.+.++++....+|.+-+..- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 67888999999965544 89999999998873 456678888888889999999999999887652 3444555444
Q ss_pred HHhh-ccCCHHHH----HHHHHH-HHHhCCCCCc-chhhHHHHHHH---------hcCCCChHHHHHHHhccCC-C--Ce
Q 037404 123 KACN-GKNWFHLV----QMIHAL-IYKCGYFGDI-FVPNSLIDSYS---------KCGVVGVSLAKKLFMSMGE-R--DI 183 (605)
Q Consensus 123 ~~~~-~~~~~~~a----~~~~~~-~~~~~~~~~~-~~~~~l~~~~~---------~~g~~~~~~a~~~~~~~~~-~--~~ 183 (605)
.--. ..+..... .+.|+. +.+.|+++-. ..|+..+..+- ... .++..+++++++.. | |.
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q--RI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ--RITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH--HHHHHHHHHHHHhcCccccH
Confidence 4322 22222222 222222 3344554433 34555555432 223 56666777776643 1 11
Q ss_pred -------ehHHHHHHHH-------HhCCChhHHHHHHhhcCCCCcchHHHHHHHHHc-------CCChHH--HHHHHHhC
Q 037404 184 -------VSWNSMIAGL-------VKGGELSEARRLFDEMPERDAVSWNTILDGYAK-------AGEMNL--AFELFEKI 240 (605)
Q Consensus 184 -------~~~~~li~~~-------~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~~--a~~~~~~~ 240 (605)
..|..-|+.. -+...+..|..+++++ ..+.+++.+ .|-.++ ..+++...
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel--------~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~ 243 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQEL--------QNLTRGLNRNAPAVPPKGTKDEIQQVELWKNW 243 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHH--------HHHHhhhcccCCCCCCCCChHHHHHHHHHHHH
Confidence 1121111111 1223344555555544 001111100 000011 11111110
Q ss_pred C---CC------C--------hhHHHHHHHHHHhc-CCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCC-------hHHH
Q 037404 241 P---HR------N--------IVSWSTMVWGYSKD-GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGM-------AKEA 295 (605)
Q Consensus 241 ~---~~------~--------~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a 295 (605)
. +. + ..+|...+..+.-+ .-|-.+-..+.... +.+...|+ .+++
T Consensus 244 I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s-----------~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 244 IKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS-----------DLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh-----------HHHHHhcccccchhhHHHH
Confidence 0 00 0 01111111111000 00111111111110 11111222 3445
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH---ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 296 ARLYDQMEEAGLKPDDGTLISILAACA---ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
..+++.....-..-+..+|..+...-. +.+..+....++..+...-..--..+|-.+++...+..-+..|+.+|.++
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 555554443322223333333322211 11224555556655554332222345666677666777777777777766
Q ss_pred CC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 373 TK-----KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 373 ~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
.+ .++...++++..||. ++..-|.++|+--.+. ..-+..-....+.-+...|+-..+..+|++.... ++.|+
T Consensus 393 R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ 469 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSAD 469 (656)
T ss_pred hhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChh
Confidence 52 255566666666653 5666777777764432 1223333344555566677777777777777773 45543
Q ss_pred --hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 448 --VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 448 --~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
..+|..++..=..-|++..+.++-+++
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 457777777777777777777776654
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.14 E-value=4.4e-06 Score=58.14 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=52.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++..+...|++++|+..++++++..|.++.++..++.++...|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46678889999999999999999999999999999999999999999999999998754
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.12 E-value=6.1e-05 Score=72.60 Aligned_cols=85 Identities=14% Similarity=0.039 Sum_probs=41.6
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+...|++++|+++|+++ ...| +...+..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++|+.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444555555555444 2222 233444444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 037404 536 VRLQMKK 542 (605)
Q Consensus 536 ~~~~~~~ 542 (605)
.+++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555544
No 149
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.10 E-value=5.1e-06 Score=48.89 Aligned_cols=33 Identities=39% Similarity=0.704 Sum_probs=27.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFT 113 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 113 (605)
.+|+.+|.++++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888776
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=0.00028 Score=58.42 Aligned_cols=124 Identities=15% Similarity=0.089 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK---YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCM 454 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l 454 (605)
|..++..+ ..++...+...++.+.+.. +.+. .....+...+...|++++|...|+.+... ...|+ ......+
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence 44444444 4778888888888888753 2231 23334556778888888898888888873 32222 2244456
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQSMP-VEPNAIIWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
...+...|++++|+..++... .......+...+.++...|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888899999999887763 2233456666778888899999999888875
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=8.7e-05 Score=59.20 Aligned_cols=106 Identities=12% Similarity=0.056 Sum_probs=73.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLL 487 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 487 (605)
++..+...+...|++++|.+.+..+.....-.+ ....+..++..+.+.|++++|.+.++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 345555666777777777777777766321111 1345566777888888888888888876 22233 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.++.+.|++++|...++++++..|+++.....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 115 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA 115 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence 88888899999999999999888887654443
No 152
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1.1e-05 Score=47.84 Aligned_cols=34 Identities=41% Similarity=0.747 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 411 (605)
.+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999999887
No 153
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.00041 Score=62.18 Aligned_cols=105 Identities=15% Similarity=0.084 Sum_probs=90.1
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhcCCCCchH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKH---NAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
..+-|...|..|...|...|+++.|..-|.+. .+. +++..+..+..++..+ ....++..+++++++.+|.+....
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34568899999999999999999999999988 333 4566777777776544 367789999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
..|+..+...|++.+|...++.|.+.....
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999976533
No 154
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=8.1e-05 Score=63.80 Aligned_cols=96 Identities=17% Similarity=0.120 Sum_probs=71.8
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
...+..++..+...|++++|...|++. ...|+ ...+..++..+.+.|++++|...++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 445666777777788888888888776 22222 3567778888888999999999999999988988888888888
Q ss_pred HHHhcCC--------------hHHHHHHHHHHHhC
Q 037404 523 IFAATGD--------------WNKVANVRLQMKKT 543 (605)
Q Consensus 523 ~~~~~g~--------------~~~A~~~~~~~~~~ 543 (605)
++...|+ +++|.+++++..+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8888776 45566666655553
No 155
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=5.9e-05 Score=66.98 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=64.3
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~ 500 (605)
.+.+++.+|+..|.++++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 455667777777776665 23345555666666777777777777666665 45555 336777777777777777777
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHH
Q 037404 501 EVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+.|+++++++|++......|-.+-
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHH
Confidence 777777777777765555554443
No 156
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.94 E-value=0.00011 Score=62.76 Aligned_cols=95 Identities=15% Similarity=-0.053 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
....+..++..+...|++++|+..|++. .+.|+ ..++..+...+...|++++|+..++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988877 33232 347888899999999999999999999999999888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHHH
Q 037404 522 NIFA-------ATGDWNKVANVRLQMK 541 (605)
Q Consensus 522 ~~~~-------~~g~~~~A~~~~~~~~ 541 (605)
.++. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8888 8888887766666554
No 157
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=2.1e-05 Score=46.21 Aligned_cols=33 Identities=39% Similarity=0.653 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 158
>PRK15331 chaperone protein SicA; Provisional
Probab=97.93 E-value=0.00093 Score=54.49 Aligned_cols=92 Identities=13% Similarity=-0.018 Sum_probs=80.4
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
......-+...|++++|..+|+-+ -..-+..-|..|..++...+++++|+..|..+..+.++||...+..+.+|...|
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence 334555667899999999999877 223456678888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 037404 529 DWNKVANVRLQMKK 542 (605)
Q Consensus 529 ~~~~A~~~~~~~~~ 542 (605)
+.+.|+..|+.+.+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999887
No 159
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.90 E-value=4.9e-05 Score=54.29 Aligned_cols=59 Identities=15% Similarity=0.130 Sum_probs=54.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...|.+.+++++|.++++++++.+|+++..+...+.++.+.|++++|.+.+++..+..+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678999999999999999999999999999999999999999999999999998654
No 160
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.90 E-value=2e-05 Score=55.41 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=47.6
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|++.++++...+|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999999999999999999999999999888753
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.90 E-value=0.00025 Score=68.43 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=81.1
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 497 (605)
..+...|++++|+..|.++++ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 345567788888888888876 33445667777888888888888888888877 4444 4667888888888899999
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+|+..++++++++|.++.+...+..+..+.
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999888877776664444
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.86 E-value=0.00089 Score=67.53 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+..+.-.....|++++|...++++++++| +...|..++.++...|+.++|.+.++++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3444444344444555555555555555555 24455555555555555555555555555443
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.018 Score=54.24 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
+.-+...|+...|.++-.+..-|+-.-|...+.+++..++|++-..+... +-++..|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 33344444455555554444444444455555555555555443332211 112233444444444444444444
Q ss_pred HHHHH
Q 037404 433 QYFYS 437 (605)
Q Consensus 433 ~~~~~ 437 (605)
.++..
T Consensus 258 ~yI~k 262 (319)
T PF04840_consen 258 KYIPK 262 (319)
T ss_pred HHHHh
Confidence 44433
No 164
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.84 E-value=0.035 Score=53.91 Aligned_cols=154 Identities=8% Similarity=0.045 Sum_probs=114.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
.+|..++..-.+......|..+|.+..+.+..+ ......+++.-++ .++..-|..+|+.-.++ +..++.--...+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHH
Confidence 578888888888888999999999999988777 5566777776554 57888999999988774 3444455567788
Q ss_pred HhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----chHHHHHHHHHhc
Q 037404 457 LLGRSGRLKEALRLVQSM---PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP----GNYTMLSNIFAAT 527 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~ 527 (605)
-+...|+-..|..+|++. .+.|+ ..+|..++.--..-|+...+.++-++.....|.+- ..-..+.+-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 888899999999999987 23444 46899999888889999999999888887766221 2233455555555
Q ss_pred CChHHHH
Q 037404 528 GDWNKVA 534 (605)
Q Consensus 528 g~~~~A~ 534 (605)
+.+..-.
T Consensus 524 d~~~c~~ 530 (656)
T KOG1914|consen 524 DLYPCSL 530 (656)
T ss_pred ccccccH
Confidence 5544333
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.84 E-value=0.054 Score=56.00 Aligned_cols=490 Identities=13% Similarity=0.067 Sum_probs=256.5
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHH--hccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL--ALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRV 102 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~ 102 (605)
+++..|.+....+.+.. ||. .|...+.++ .+.|+.++|..+++... ..|..+...+-.+|...++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 55566666666666653 443 333444444 58899999999998765 34667788888999999999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCC--------ChHHHHHH
Q 037404 103 FLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVV--------GVSLAKKL 174 (605)
Q Consensus 103 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~~~a~~~ 174 (605)
|++..+. .|+......++.+|.+.+++.+-.++--++.+. ++-+.+.+-+.++.+...-.. -..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998865 566777778888888888877766665555553 344555555555555443210 23445566
Q ss_pred HhccCCCC--ee---hHHHHHHHHHhCCChhHHHHHHhhc-----CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 037404 175 FMSMGERD--IV---SWNSMIAGLVKGGELSEARRLFDEM-----PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRN 244 (605)
Q Consensus 175 ~~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 244 (605)
++.+.+.+ .. -.-.-...+-..|++++|++++..- ...+...-+.-+..+...+++.+..++-.++...+
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66655433 11 1222234455778899999888332 22233333445666677777777666655544321
Q ss_pred hhHHHHHHHH----------------HHhcCCHHHHHHHHhhCCCC-CcccHHHHHHHHH---hCCChHHHHHHHHHHHH
Q 037404 245 IVSWSTMVWG----------------YSKDGDMEMAKLLFDRMPAK-TLVPWTIIISGYA---EKGMAKEAARLYDQMEE 304 (605)
Q Consensus 245 ~~~~~~l~~~----------------~~~~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~a~~~~~~m~~ 304 (605)
..-|...++. +...+..+...+...+.... .--+|-+-+..+. .-|+.+++...|-+-
T Consensus 257 ~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~k-- 334 (932)
T KOG2053|consen 257 NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKK-- 334 (932)
T ss_pred CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHH--
Confidence 1112222221 11222333333333332221 2223444444433 347777766554322
Q ss_pred cCCCC-------------CHHHHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-----hHHH
Q 037404 305 AGLKP-------------DDGTLISILAACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS-----LDNA 365 (605)
Q Consensus 305 ~~~~p-------------~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A 365 (605)
-|-.| +......++..+.... +.....+.++. +...+..-.-.|. .+.-
T Consensus 335 fg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~------------h~c~l~~~rl~G~~~~l~ad~i 402 (932)
T KOG2053|consen 335 FGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQ------------HLCVLLLLRLLGLYEKLPADSI 402 (932)
T ss_pred hCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHH------------HHHHHHHHHHhhccccCChHHH
Confidence 12121 1111122222222211 11111111111 1111111111111 1111
Q ss_pred HHHHhc--------------CCCC-----C---hhHHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 366 MSVFNG--------------MTKK-----D---LVSWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 366 ~~~~~~--------------~~~~-----~---~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
..++.+ +.+. + ..+-+.|+..+.+.++.. +|+-+++.-.... +-|..+-..+++
T Consensus 403 ~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLir 481 (932)
T KOG2053|consen 403 LAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIR 481 (932)
T ss_pred HHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHH
Confidence 111111 0000 1 124566777788877765 4444455444432 335566667788
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCC-HHHHHHHHHHHHhcCCHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPN-AIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~g~~~ 497 (605)
.|+-.|-...|.+.|..+--+ .+..|...|. +...+...|++..+...+... .+ ..+ ..+-..+..+| +.|.+.
T Consensus 482 iY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~yS 558 (932)
T KOG2053|consen 482 IYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYS 558 (932)
T ss_pred HHHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchh
Confidence 888889999999988888653 4544443332 334455667777776666554 11 011 12223333444 667777
Q ss_pred HHHHHHHHHHhhcCC----CCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 498 LAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+..++..--.+++.. -..+-......+...++.++-...+..|.
T Consensus 559 kI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 559 KIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 766665443333221 11233445566777788887777777766
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.79 E-value=9.3e-05 Score=54.51 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA-IIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
|+++.|+.+++++.+.....++...+..++.+|.+.|++++|.+++++.+..|.. .....++.++.+.|++++|+..++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4455555555555442111112333333455555555555555555443222222 233333455555555555555554
Q ss_pred H
Q 037404 505 C 505 (605)
Q Consensus 505 ~ 505 (605)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.78 E-value=0.0045 Score=51.00 Aligned_cols=133 Identities=9% Similarity=0.017 Sum_probs=105.1
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 037404 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP---NAIIW 483 (605)
Q Consensus 408 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 483 (605)
..|+...-..|..+....|+..+|...|++... --+..|..+...+.++....+++..|...+++. ...| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777777788899999999999999999887 245567888888999999999999999999887 2222 22333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
..+.+.+...|++..|+..|+.+....|. +..-...+..+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 45778899999999999999999987665 55666778889999998888776666654
No 168
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.77 E-value=0.0013 Score=61.44 Aligned_cols=109 Identities=13% Similarity=0.215 Sum_probs=54.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHhccc
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH-GQGEKALGLFSRMKD----EGFGPD--KYTFVGVLCACTHA 425 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p~--~~~~~~ll~~~~~~ 425 (605)
+..|...|++..|-+++.+ +...|... |++++|++.|++..+ .| .+. ..++..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4455566666665554432 44555555 666666666666543 12 111 12345555666677
Q ss_pred CCHHHHHHHHHHhHHhhCCC-----CchH-HHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 426 GFIDKGVQYFYSMERDYGIL-----PQVE-HYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
|++++|.++|+++... ... .+.. .+-..+-++...|+...|.+.+++.
T Consensus 169 ~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp T-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777766552 111 1121 2223344555566776776666664
No 169
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.77 E-value=8.8e-05 Score=51.49 Aligned_cols=61 Identities=16% Similarity=0.239 Sum_probs=50.9
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 454 MIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
++..+...|++++|.+.|+++ ...|+ ...+..++.++...|++++|...++++++..|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 566788999999999999988 44564 56888899999999999999999999999999875
No 170
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00034 Score=52.94 Aligned_cols=92 Identities=20% Similarity=0.137 Sum_probs=49.0
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNA 495 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 495 (605)
+...+...|++++|...++.+.+ ..+.+...+..++..+...|++++|.+.++.. ...| +..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 33344445555555555555544 12222344455555555566666666666554 2222 23455556666666666
Q ss_pred HHHHHHHHHHHHhhcC
Q 037404 496 VELAEEVLDCLIRLKG 511 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p 511 (605)
++.|...+.++.+..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6667666666665544
No 171
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.0013 Score=56.27 Aligned_cols=129 Identities=16% Similarity=0.141 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
..+..+...+...|++++|...|++..+.+..+. ...+..+..++.+.|++++|...+.++.. ..+.+...+..++
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 4555566666667777777777776665432222 24555566666666777777776666655 2222344555555
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
..+...|+...+..-++.. ...+++|.++++++.+.+|++ +..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5565555554443322221 012677888888888888776 5555555555444
No 172
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.75 E-value=3.8e-05 Score=43.94 Aligned_cols=31 Identities=32% Similarity=0.538 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGV 111 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 111 (605)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888877664
No 173
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.042 Score=52.22 Aligned_cols=337 Identities=10% Similarity=0.098 Sum_probs=170.8
Q ss_pred HHHHHHHHhCCChhHHHHHHhhcC----C----CCcchHHHHHHHHHcCCChHHHHHHHHhCCCCCh-hHHHHHHHHHHh
Q 037404 187 NSMIAGLVKGGELSEARRLFDEMP----E----RDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI-VSWSTMVWGYSK 257 (605)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~~~~~~----~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~l~~~~~~ 257 (605)
+..++++...|++.++..+++++. + -+..+|+.++-.+++.=-++ +-+ ....+. .-|-.++-.|.+
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLE----l~e-~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLE----LKE-SMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHH----HHH-hcccccChHHHHHHHHHHH
Confidence 456778888999999999888882 2 47777877555554321111 111 111111 223334444433
Q ss_pred cCCHHHHHHHHhhCCCCCccc----HHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCchHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVP----WTIIISGYAE--KGMAKEAARLYDQMEEAGLKPDDGT-LISILAACAESGLLGLG 330 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a 330 (605)
.=.. ++...-....+ ...++....- ..+..--+.++......-+.|+... ...+...+.+ +.+++
T Consensus 207 ki~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~ 278 (549)
T PF07079_consen 207 KIHA------FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV 278 (549)
T ss_pred HHHH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH
Confidence 2111 11100001111 1111111111 1111222223333333335555432 2333333333 44444
Q ss_pred HHHHHHHHHcCCC----CChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhH-------HHHHHHHHHH----cCCh
Q 037404 331 MKVHASINKYRFK----CNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVS-------WNAMLYGLAM----HGQG 393 (605)
Q Consensus 331 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~-------~~~l~~~~~~----~~~~ 393 (605)
..+.+.+....+. .-...|..++....+.++...|...+.-+. +|+... -..+-+..+. .-+.
T Consensus 279 ~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 279 GHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 4444433322111 113457777778888888888887776544 332221 1112222221 1123
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH---HHhcccCC-HHHHHHHHHHhHHhhCCCC-chHHHHHHHH----Hhhh---c
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFVGVL---CACTHAGF-IDKGVQYFYSMERDYGILP-QVEHYGCMID----LLGR---S 461 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~~ll---~~~~~~g~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~----~~~~---~ 461 (605)
..-+.+|.......+.-.. ....++ .-+-+.|. -++|..+++.+.+ +.| |...-|.+.. .|.. .
T Consensus 359 r~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~ 434 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSM 434 (549)
T ss_pred HHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556665554332211 122222 22444554 8889999988876 333 3333332211 1211 1
Q ss_pred CCHHH---HHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 462 GRLKE---ALRLVQSMPVEP----NAIIWGTLLGA--CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 462 g~~~~---A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
..+.+ -...+++.+++| +...-|.|..+ +..+|++.++.-.-.-+.++.| ++.+|..+|-++....+|++
T Consensus 435 ~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~e 513 (549)
T PF07079_consen 435 HAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQE 513 (549)
T ss_pred hhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHH
Confidence 22222 223344555554 34455666544 5678999999999999999999 79999999999999999999
Q ss_pred HHHHHHHHH
Q 037404 533 VANVRLQMK 541 (605)
Q Consensus 533 A~~~~~~~~ 541 (605)
|..++..+.
T Consensus 514 A~~~l~~LP 522 (549)
T PF07079_consen 514 AWEYLQKLP 522 (549)
T ss_pred HHHHHHhCC
Confidence 999998665
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00098 Score=61.94 Aligned_cols=135 Identities=14% Similarity=0.117 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+ .++.+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467788888888888999999999998643 2334444444444 3335677779999999998 45667788899999
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 457 LLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.+.+.|+.+.|..+|++. ..-|. ...|...+..-.+.|+.+....+.+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999987 22233 348999998889999999999999999998887543
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.72 E-value=0.015 Score=54.36 Aligned_cols=102 Identities=9% Similarity=0.034 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHh-hCCCCc--hH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-----PDKY-TFVGVLCACTHAGFIDKGVQYFYSMERD-YGILPQ--VE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~--~~ 449 (605)
++..+...+.+.|++++|.++|++....-.. .+.. .|...+-++...|+...|...+++.... .++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3445677788888888888888887764322 1221 2333444666778898999888887542 122222 34
Q ss_pred HHHHHHHHhhhc--CCHHHHHHHHHhCCCCCCHH
Q 037404 450 HYGCMIDLLGRS--GRLKEALRLVQSMPVEPNAI 481 (605)
Q Consensus 450 ~~~~l~~~~~~~--g~~~~A~~~~~~~~~~p~~~ 481 (605)
....|+.++-.. ..+++|+.-|+.+. +.|..
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~-~ld~w 269 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS-RLDNW 269 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS----HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC-ccHHH
Confidence 556667776543 45778888888874 33443
No 176
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.69 E-value=0.002 Score=65.12 Aligned_cols=142 Identities=12% Similarity=0.019 Sum_probs=105.2
Q ss_pred CCCCChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccC--------CHHHHHHHHHH
Q 037404 372 MTKKDLVSWNAMLYGLAM--HG---QGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAG--------FIDKGVQYFYS 437 (605)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~--~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g--------~~~~a~~~~~~ 437 (605)
..+.+...|...+++... .+ +...|..+|++..+. .|+. ..+..+..++.... +...+.+....
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 335688899999887543 32 377999999999985 6764 45665554443221 22344444444
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.......+.+...|..+.......|++++|...++++ ...|+...|..++..+...|+.++|.+.++++.+++|.++.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3331123445678888888888889999999999998 67789889999999999999999999999999999999985
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.67 E-value=0.00055 Score=63.36 Aligned_cols=130 Identities=12% Similarity=0.005 Sum_probs=87.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhH---HhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSME---RDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-------P-VEPNA 480 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~ 480 (605)
..|..|...|.-.|+++.|+...+.-. +.+|... ....+..+..++.-.|+++.|.+.|+.. + -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356666677777888888877665322 2234332 2446777888888888888888887754 2 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLK------GSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..+|..+|.-..++++|+.++.+=+.+. .....++..|+.+|...|..+.|+.+.++..+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456677777777778888888877655441 22345678888888888888888887777655
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.63 E-value=0.0014 Score=51.34 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=57.4
Q ss_pred HHHHhhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCchHHHHHHHHH
Q 037404 454 MIDLLGRSGRLKEALRLVQSM---PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS---DPGNYTMLSNIFA 525 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 525 (605)
+..++-..|+.++|+.+|++. +.... ...+..+..++...|++++|..++++.....|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445566667777777777665 22211 234555667777777777777777777776666 5555566667777
Q ss_pred hcCChHHHHHHHHHHH
Q 037404 526 ATGDWNKVANVRLQMK 541 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~ 541 (605)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7777777777765544
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=9.4e-05 Score=42.23 Aligned_cols=31 Identities=35% Similarity=0.687 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF 408 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 408 (605)
++|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3678888888888888888888888887763
No 180
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.097 Score=53.07 Aligned_cols=323 Identities=13% Similarity=0.117 Sum_probs=182.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhcCCCC---cchHHHHHHHHHcCC---ChHHHHHHHHhCCC--CChhHHHHHHHHHHh
Q 037404 186 WNSMIAGLVKGGELSEARRLFDEMPERD---AVSWNTILDGYAKAG---EMNLAFELFEKIPH--RNIVSWSTMVWGYSK 257 (605)
Q Consensus 186 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 257 (605)
-..+|+-+...+.+..|+++-..+..|. ...|......+.+.. +-+-+..+-+++.. ....+|..+..-...
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 3456777888888888888888886654 445555555555542 22333334444444 455678888888888
Q ss_pred cCCHHHHHHHHhhCCCCCcc--------cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLV--------PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGL 329 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 329 (605)
+|+.+-|..+++.=...... -+..-+.-....|+.+-...++-.+..+ .+...+.. ...+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~------~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFM------TLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHH------HHHhchh
Confidence 89999888888764432211 1444445555566666666665555432 11111111 1123334
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-C------CCCChhHHHHHHHHHHHcCCh---------
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG-M------TKKDLVSWNAMLYGLAMHGQG--------- 393 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~------~~~~~~~~~~l~~~~~~~~~~--------- 393 (605)
|..+|..+.+..-. ..+-+.| +.++..++...|.. - ..+-..........+.+....
T Consensus 591 a~~lY~~~~r~~~~------~~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDR------ATLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhch------hhhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44455544332100 0111112 22222222222210 0 011112222333344443321
Q ss_pred -HHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 394 -EKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 394 -~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
.+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+- ||-..|-.-+.+++..+++++-+++-
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLekfA 738 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELEKFA 738 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHHHHH
Confidence 111222222222 23333444556666677788888898888776633 77778888888999999999988888
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 472 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+..+ .+.-|.-+..+|.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--+-
T Consensus 739 kskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 739 KSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred hccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHHh
Confidence 7764 245566678899999999999988765332 226788899999999988765433
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.57 E-value=0.00011 Score=51.60 Aligned_cols=61 Identities=25% Similarity=0.353 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 460 RSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
..|++++|+++|+++ ...| +...+..++.+|.+.|++++|..+++++...+|+++..+..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455555666665555 2222 444555556666666666666666666666666554444433
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.018 Score=52.11 Aligned_cols=174 Identities=10% Similarity=0.029 Sum_probs=102.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---ChhH---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTKK---DLVS---WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
.....+...|++++|.+.|+.+... +... .-.++.+|.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444556677788887777776632 1122 234556677788888888888887774322112223222222221
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 037404 425 --AG---------------F---IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484 (605)
Q Consensus 425 --~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 484 (605)
.+ + ...|...|+.+++ .|=...-..+|...+..+...--.. -.
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-EL 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-HH
Confidence 11 1 1233344444444 2222233344444433331000011 12
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.+..-|.+.|.+..|..-++.+++..|+.+ .++..++.+|...|..++|.+......
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 456778899999999999999999877765 567788899999999999999877654
No 183
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.53 E-value=0.0008 Score=61.26 Aligned_cols=94 Identities=17% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLS 521 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~ 521 (605)
.|......+.+.|++++|...|+.. ...|+ +..+..++.+|...|++++|...|+++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445668888888888776 22333 2355667788888888888988888888877765 45566677
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|..+++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888999999988888874
No 184
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.50 E-value=0.084 Score=49.22 Aligned_cols=275 Identities=17% Similarity=0.162 Sum_probs=178.1
Q ss_pred cCCHHHHHHHHhhC---CCCCcccHHHHHH--HHHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCchHHH
Q 037404 258 DGDMEMAKLLFDRM---PAKTLVPWTIIIS--GYAEKGMAKEAARLYDQMEEAGLKPDDG--TLISILAACAESGLLGLG 330 (605)
Q Consensus 258 ~~~~~~a~~~~~~~---~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 330 (605)
.|+-..|.++-.+. ...+..+.-.++. +-.-.|+++.|.+-|+.|.. .|... .+..+.....+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 45555555554432 2334444433433 23356888889888888876 23322 233444445677888888
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChh--HHHHHHHHHH---HcCChHHHHHHH
Q 037404 331 MKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-----KKDLV--SWNAMLYGLA---MHGQGEKALGLF 400 (605)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~A~~~~ 400 (605)
.++-...-..- +.-.......+...+..|+|+.|+++++.-. +++.. .-..|+.+-+ -.-+...|...-
T Consensus 174 r~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 88877765543 2235677888899999999999999987543 34432 2222332211 123455666655
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH--H--HHHHhCC
Q 037404 401 SRMKDEGFGPDKYT-FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA--L--RLVQSMP 475 (605)
Q Consensus 401 ~~m~~~g~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A--~--~~~~~~~ 475 (605)
.+..+ +.|+... -..-..++.+.|+..++-.+++.+-+ ..|.+.++..++ +.+.|+.... . +-+..|+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 55554 5777653 33345778999999999999999965 456665554333 4566653221 1 1223332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHhCCC
Q 037404 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-GDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 476 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 545 (605)
+.+......+..+....|++..|..-.+.+.+..|. ..+|..|+++-... |+-.++...+-+..+..-
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 234567778888999999999999999999988887 45788888887555 999999999999887543
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.50 E-value=0.00088 Score=64.69 Aligned_cols=120 Identities=13% Similarity=0.186 Sum_probs=85.7
Q ss_pred CCCCCCcchHHHHHHHhccCChhHHHHHhcccCC-C-----CcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037404 44 DLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-P-----DVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT 117 (605)
Q Consensus 44 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 117 (605)
+.+.+......+++......+++.+..++-.... | -..+..++++.|...|..+.++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455566666677777666777777777766552 1 223456788888888888888888888888888888888
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhc
Q 037404 118 YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKC 163 (605)
Q Consensus 118 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (605)
|+.||..+.+.|++..|.++...|...+...+..++.--+..|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766655555555444444443
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.49 E-value=0.00096 Score=62.00 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=100.6
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR-SGRLKEALRLVQSM--PVEPNAIIWGTLLGA 489 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~ 489 (605)
.+|..+++...+.+..+.|..+|.++.+. -..+..+|...+..-.. .++.+.|.++|+.+ ....+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 45777888888888999999999999862 33345556665555334 56777799999988 345677889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...|+.+.|+.+|++++..-|.+. .+|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765544 57888999999999999999999999875
No 187
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0028 Score=54.11 Aligned_cols=113 Identities=16% Similarity=0.100 Sum_probs=51.6
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACR 491 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~ 491 (605)
+..+...+...|++++|...++.+......++ ...++..+...+...|++++|.+.+++. .+.|+ ...+..+...+.
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33344444445555555555555543111111 1234555555555555555555555554 22222 233344444443
Q ss_pred -------hcCCHH-------HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 492 -------KHNAVE-------LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 492 -------~~g~~~-------~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
..|+++ +|...++++...+|.+ +......+...|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN---YIEAQNWLKITGRF 167 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc---HHHHHHHHHHhcCC
Confidence 566665 4444555555555543 23444444444443
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.48 E-value=0.013 Score=52.99 Aligned_cols=54 Identities=17% Similarity=0.013 Sum_probs=25.5
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
.+-|.+.|.+..|..-++.+.+++.-.| .......++.+|...|..++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3345555555555555555554332222 23334444555555555555555443
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.48 E-value=0.00038 Score=48.93 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=54.5
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcC
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN-AVELAEEVLDCLIRLKG 511 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p 511 (605)
+...|..++..+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888899999999999999887 4445 4668888899999999 79999999999999887
No 190
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.47 E-value=9e-05 Score=43.05 Aligned_cols=34 Identities=21% Similarity=0.435 Sum_probs=31.3
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.46 E-value=0.0073 Score=49.15 Aligned_cols=87 Identities=7% Similarity=-0.026 Sum_probs=37.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
+...+...|++++|.++|+.+... .| +..-|..|..+|...|++.+|+..|..+.. .. +.++..+-.+..++...
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC-CCCchHHHHHHHHHHHc
Confidence 333344445555555555544442 22 222333344444444455555555544433 11 22344444444444444
Q ss_pred CCHHHHHHHHHh
Q 037404 462 GRLKEALRLVQS 473 (605)
Q Consensus 462 g~~~~A~~~~~~ 473 (605)
|+.+.|.+.|+.
T Consensus 117 G~~~~A~~aF~~ 128 (157)
T PRK15363 117 DNVCYAIKALKA 128 (157)
T ss_pred CCHHHHHHHHHH
Confidence 444444444443
No 192
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.45 E-value=0.16 Score=51.06 Aligned_cols=203 Identities=13% Similarity=0.070 Sum_probs=110.7
Q ss_pred CCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-CCeehHHHH----------HHHHHhCCChhHHHHHHhhcCCCCcc
Q 037404 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-RDIVSWNSM----------IAGLVKGGELSEARRLFDEMPERDAV 215 (605)
Q Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~~~~~~~~ 215 (605)
.|-+..|..|.......- +++.|+..|-+... +.+..-..| ...-+--|++++|.++|-+|.+.|.
T Consensus 689 nPHprLWrllAe~Al~Kl--~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKL--ALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHH--hhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh-
Confidence 355566666666555555 66666666655543 111110000 1112234788888888887765553
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 037404 216 SWNTILDGYAKAGEMNLAFELFEKIPHRN-----IVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290 (605)
Q Consensus 216 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (605)
.+..+.+.|++-...++++..-..+ ...++.+...+.....|++|.+.+...... ...+.++.+..
T Consensus 766 ----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~~ecly~le 836 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQIECLYRLE 836 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhHHHHHHHHH
Confidence 3556667788888888887654321 256777777777777788887777764321 12344444444
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 037404 291 MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFN 370 (605)
Q Consensus 291 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 370 (605)
++++-..+-.. ++-+...+-.+...+.+.|.-++|.+.+-+.. .+ .+.+..|...++|.+|.++-+
T Consensus 837 ~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 837 LFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred hhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332 23334444455556666666666555443221 11 123445556666666666665
Q ss_pred cCCCC
Q 037404 371 GMTKK 375 (605)
Q Consensus 371 ~~~~~ 375 (605)
...-|
T Consensus 903 ~~~l~ 907 (1189)
T KOG2041|consen 903 RFQLP 907 (1189)
T ss_pred hccch
Confidence 54433
No 193
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.44 E-value=0.0051 Score=50.69 Aligned_cols=108 Identities=18% Similarity=0.188 Sum_probs=93.7
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS- 512 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 512 (605)
+..++....|+...-..|..++...|+..+|...|++. ....|...+..+.++....+++..|...++++.+.+|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33333456688888888999999999999999999987 35568888889999999999999999999999998764
Q ss_pred -CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 513 -DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 513 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|.....++..|...|++.+|+.-++.....-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 67788899999999999999999999999854
No 194
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.38 E-value=0.00039 Score=50.34 Aligned_cols=62 Identities=11% Similarity=0.193 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---C-C---CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLK---G-S---DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+++.+...|...|++++|+..+++++++. + + -..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467778888888888888888888888651 1 2 235677888888899999999988888765
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.36 E-value=0.00098 Score=63.74 Aligned_cols=66 Identities=14% Similarity=-0.049 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN---YTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+...++.+..+|...|++++|+..++++++++|+++.. |+.++.+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346677777888888888888888888888888877744 778888888888888888888888774
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.35 E-value=0.21 Score=50.30 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=73.7
Q ss_pred ChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCcc--cHH--HHH--HHhhccCCHHHHHH
Q 037404 64 QMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK-GVFTDNF--TYP--FLL--KACNGKNWFHLVQM 136 (605)
Q Consensus 64 ~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~--~~~--~ll--~~~~~~~~~~~a~~ 136 (605)
..++|.++.+. .|.+..|..|...-...-.++.|...|-+.... |++.-.. +.. .+- ..-+--|.+++|++
T Consensus 678 gledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek 755 (1189)
T KOG2041|consen 678 GLEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEK 755 (1189)
T ss_pred chHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhh
Confidence 34555555443 466677877666555555566666665544331 2211000 000 000 01223477888888
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCC-----eehHHHHHHHHHhCCChhHHHHHHhhc
Q 037404 137 IHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD-----IVSWNSMIAGLVKGGELSEARRLFDEM 209 (605)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (605)
++-++-++. .-+..+.+.| |+-.+.++++.-...+ ..+|+.+...+.....+++|.+.|..-
T Consensus 756 ~yld~drrD---------LAielr~klg--DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 756 LYLDADRRD---------LAIELRKKLG--DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred hhhccchhh---------hhHHHHHhhh--hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 887765543 3466677777 7777777776644321 235677777777777777777666543
No 197
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.35 E-value=0.0035 Score=47.11 Aligned_cols=86 Identities=13% Similarity=0.147 Sum_probs=61.3
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChH
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGE 394 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 394 (605)
..+..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++..--.. .-.++.-
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~kl~ 86 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIENKLT 86 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHHHHH
Confidence 345555666888888888888888888 7788888888877665421111 1112345
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
+.+.+|+.|...+++|+..+|+.++..+.+
T Consensus 87 ~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 87 NLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 677888999999999999999999987654
No 198
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.33 E-value=0.24 Score=50.44 Aligned_cols=100 Identities=13% Similarity=0.110 Sum_probs=64.1
Q ss_pred CCCCCCcccHHHH-----HHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC-CCChHHHHHHHhccCC--
Q 037404 109 KGVFTDNFTYPFL-----LKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCG-VVGVSLAKKLFMSMGE-- 180 (605)
Q Consensus 109 ~~~~p~~~~~~~l-----l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~a~~~~~~~~~-- 180 (605)
-|++.+..-|..+ +.-+...+.+..|.++-..+-..-... ..++......+.+.. ..+-+.+..+-+++..
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 4566655555443 444567777888888776663322222 566777777777662 2244555666666665
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhc
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEM 209 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (605)
....+|..+.+.....|+++-|..+++.=
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E 533 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELE 533 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcC
Confidence 45667888888888888888888877653
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.32 E-value=0.04 Score=52.35 Aligned_cols=162 Identities=18% Similarity=0.084 Sum_probs=94.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC-------ChhHHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 350 NALVDMYAKCGSLDNAMSVFNGMTKK-------DLVSWNAMLYGLAM---HGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 350 ~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
..++-.|....+++...++.+.+... ....--..+-++.+ .|+.++|+.++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34444566666777777776666533 11222233344455 677777777777755544566666766665
Q ss_pred HHhcc---------cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHH----HHHHHH---HhC-------CC
Q 037404 420 CACTH---------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK----EALRLV---QSM-------PV 476 (605)
Q Consensus 420 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~ 476 (605)
+.|-. ....++|+..|.+.- .+.|+...--.++-.+...|... +..++- ... ..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 54422 224667777777663 34455443333333344444311 222221 111 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+-..+.+++.++.-.|++++|.+.++++.+..|+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 34566777888999999999999999999999876654
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.31 E-value=0.00046 Score=43.16 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
.++..+...|.+.|++++|+++++++++.+|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788999999999999999999999999999998888764
No 201
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0019 Score=60.27 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++..+..++.+.+++.+|++...++++.+|+|..+++.-+.++...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 345667777788888888888888888888888888888888888888888888888888873
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.31 E-value=0.0036 Score=47.10 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhcccC--------CHHHHHHHHHHhHHhhCCCCchH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPDKYTFVGVLCACTHAG--------FIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
+....|..+...+++.....+|+.++..|+ .|+..+|+.++.+..+.. ++-+.+.+|+.+.. .+++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHH
Confidence 334456667777999999999999999999 899999999998876543 34567788899988 58999999
Q ss_pred HHHHHHHHhhh
Q 037404 450 HYGCMIDLLGR 460 (605)
Q Consensus 450 ~~~~l~~~~~~ 460 (605)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 203
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.15 Score=48.05 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=49.8
Q ss_pred HccCchHHHHHHHHHHHHc---CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHH---HHHHHHHcCChHH
Q 037404 322 AESGLLGLGMKVHASINKY---RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNA---MLYGLAMHGQGEK 395 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~ 395 (605)
.+.|++..|.+.|.+.+.. +..++...|........+.|+.++|+.--+....-|...... -..++...+++++
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~ 339 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE 339 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555432 234455566666666777777777777777666655543222 2334555667777
Q ss_pred HHHHHHHHHHC
Q 037404 396 ALGLFSRMKDE 406 (605)
Q Consensus 396 A~~~~~~m~~~ 406 (605)
|.+-+++..+.
T Consensus 340 AV~d~~~a~q~ 350 (486)
T KOG0550|consen 340 AVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHhh
Confidence 77777766554
No 204
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.26 E-value=0.0033 Score=60.82 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=95.5
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037404 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK------DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414 (605)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 414 (605)
+.+.+......+++......+++.+..++.+.... -..+..++++.|...|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556666777888888888888888888766522 235667999999999999999999999889999999999
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
++.|+..+.+.|++..|.++...|.. .....+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988877 35666666666555555554
No 205
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.20 E-value=0.2 Score=46.92 Aligned_cols=77 Identities=12% Similarity=-0.030 Sum_probs=35.8
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHH----HhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCCh
Q 037404 93 NSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK----ACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGV 168 (605)
Q Consensus 93 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 168 (605)
.|+++.|.+-|+.|... +.|-..=++ ..-+.|+.+.|+++-+.....-. .=.+.+..++...+..| ++
T Consensus 133 eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~g--dW 204 (531)
T COG3898 133 EGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAG--DW 204 (531)
T ss_pred cCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcC--Ch
Confidence 45556666666655532 222111112 22345555555555554443221 12344455555555555 55
Q ss_pred HHHHHHHhc
Q 037404 169 SLAKKLFMS 177 (605)
Q Consensus 169 ~~a~~~~~~ 177 (605)
+.|+++++.
T Consensus 205 d~AlkLvd~ 213 (531)
T COG3898 205 DGALKLVDA 213 (531)
T ss_pred HHHHHHHHH
Confidence 555555543
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.19 E-value=0.026 Score=49.76 Aligned_cols=164 Identities=13% Similarity=0.095 Sum_probs=86.4
Q ss_pred HHHHHhcCChHHHHHHHhcCCC--C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhc-
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTK--K----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACT- 423 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~- 423 (605)
...+...|++++|.+.|+.+.. | -....-.++.++.+.|+++.|...++++.+. -|+. ..+...+.+.+
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 3444555666666666665542 1 1134445566677777777777777776654 2221 11221111111
Q ss_pred ------------ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037404 424 ------------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACR 491 (605)
Q Consensus 424 ------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 491 (605)
..+...+|...| ..++..|=......+|...+..+...- ..--..++..|.
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~l-a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNRL-AEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 111122233333 333444444444455555444431000 111123567788
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHH
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+.|.+..|..-++.+++..|+.+ .++..++.+|.+.|..+.|..
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999999999999888875 456778888999999885543
No 207
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.17 E-value=0.24 Score=47.35 Aligned_cols=443 Identities=16% Similarity=0.147 Sum_probs=206.5
Q ss_pred HHHhhcCCchHHHHHHHHHHHhCCCCCC------cchHHHHHHHhccCChhHHHHHhcccCC-CCcccHHHHHHH--HHh
Q 037404 22 QNLHKCKNLNQTKQLFAQIIKLDLQRDP------YIAPKLISSLALCRQMGLAIKVFNDIQD-PDVHLYNTLIRA--CVQ 92 (605)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~--~~~ 92 (605)
..|.+.+++.++..+|..+.+.- ..++ ..-+.++++|.. .+.+.....+....+ -....|-.+..+ +.+
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 46778899999999998888763 2332 233567777763 455555555444432 113345555443 346
Q ss_pred CCCchHHHHHHHHHHhC--CCCC------------CcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCC----CCcchhh
Q 037404 93 NSLNAQAFRVFLDMQEK--GVFT------------DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYF----GDIFVPN 154 (605)
Q Consensus 93 ~~~~~~a~~~~~~m~~~--~~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~ 154 (605)
.+.+..|++.+....++ +..| |-..=+.....+...|.+.+++.++..+...=++ .+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78888898888777655 3222 1111223344567888999998888887765433 6777888
Q ss_pred HHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcC-----CC
Q 037404 155 SLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKA-----GE 229 (605)
Q Consensus 155 ~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~-----~~ 229 (605)
.++-++++.- - .++-+.+...=...|..++-.|.+.=+.-++.. +++ ..|.......++....-. .-
T Consensus 172 ~~vlmlsrSY--f----LEl~e~~s~dl~pdyYemilfY~kki~~~d~~~-Y~k-~~peeeL~s~imqhlfi~p~e~l~~ 243 (549)
T PF07079_consen 172 RAVLMLSRSY--F----LELKESMSSDLYPDYYEMILFYLKKIHAFDQRP-YEK-FIPEEELFSTIMQHLFIVPKERLPP 243 (549)
T ss_pred HHHHHHhHHH--H----HHHHHhcccccChHHHHHHHHHHHHHHHHhhch-HHh-hCcHHHHHHHHHHHHHhCCHhhccH
Confidence 7777776543 1 111111111111234444444433211111100 000 011111111111111110 00
Q ss_pred hHHHHHHHHhC-CCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCC--------CCCcccHHHHHHHHHhCCChHHHHHHH
Q 037404 230 MNLAFELFEKI-PHRNI-VSWSTMVWGYSKDGDMEMAKLLFDRMP--------AKTLVPWTIIISGYAEKGMAKEAARLY 299 (605)
Q Consensus 230 ~~~a~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (605)
+-++.+.++.- ..|+. .+...|..-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|...+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11122222211 11221 222233333332 3333333332221 112223666666777777777777777
Q ss_pred HHHHHcCCCCCHHHHHHHH-------HHHH-ccCc---hHHHHHHHHHHHHcCCCCChhHHHHHH---HHHHhcCC-hHH
Q 037404 300 DQMEEAGLKPDDGTLISIL-------AACA-ESGL---LGLGMKVHASINKYRFKCNTNVCNALV---DMYAKCGS-LDN 364 (605)
Q Consensus 300 ~~m~~~~~~p~~~~~~~ll-------~~~~-~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~~ 364 (605)
.-+.- +.|+...-..++ ...+ ...+ ...-..++..+...++.. .....-|+ .-+.+.|. -++
T Consensus 322 ~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~dek 398 (549)
T PF07079_consen 322 ALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDEK 398 (549)
T ss_pred HHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccHH
Confidence 65554 234433211111 1111 1111 112223333333333221 11111222 22344444 666
Q ss_pred HHHHHhcCC---CCChhHHHHHHH----HHHH---cCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHH--hcccCCH
Q 037404 365 AMSVFNGMT---KKDLVSWNAMLY----GLAM---HGQGEKALGLFSRMKDEGFGPDKY----TFVGVLCA--CTHAGFI 428 (605)
Q Consensus 365 A~~~~~~~~---~~~~~~~~~l~~----~~~~---~~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~--~~~~g~~ 428 (605)
|.++++.+. +.|..+-|.+.. .|.+ ...+.+-+.+-+-+.+.|+.|-.. .-+.+..+ +...|++
T Consensus 399 alnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey 478 (549)
T PF07079_consen 399 ALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEY 478 (549)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccH
Confidence 777766554 234433333221 2221 223334444444455566665322 23333322 4456777
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWG 484 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 484 (605)
.++.-.-.-+. .+.|++.+|..++-++....++++|..++..++ |+..+++
T Consensus 479 ~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~d 529 (549)
T PF07079_consen 479 HKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRD 529 (549)
T ss_pred HHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHH
Confidence 77665444442 466777777777777777777777777777765 4555544
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.16 E-value=0.013 Score=45.95 Aligned_cols=91 Identities=16% Similarity=0.193 Sum_probs=51.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhh
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLG 459 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 459 (605)
...++-..|+.++|+.+|++....|+.... ..+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 344566667777777777777776655432 3445555666677777777777776665321100 2222223344555
Q ss_pred hcCCHHHHHHHHHh
Q 037404 460 RSGRLKEALRLVQS 473 (605)
Q Consensus 460 ~~g~~~~A~~~~~~ 473 (605)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66666666665543
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.15 E-value=0.011 Score=53.89 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=73.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLL 487 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 487 (605)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..++..|...|++++|...|+.+ ...|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 355555444566888888888888877421111 1346677888888899999999888887 22222 44555667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.++...|+.++|...|+++++..|++..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 7788899999999999999999888763
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.14 E-value=0.24 Score=46.79 Aligned_cols=84 Identities=14% Similarity=0.181 Sum_probs=46.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 037404 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 216 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (605)
+.+..+.-+...|+...|.++-.+..-|+...|...+.+++..++|++-.++-.. ++.+..|..++..|...|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 3444455555556666666665555556666666666666666666655554433 34445555566666665655555
Q ss_pred HHHHHH
Q 037404 296 ARLYDQ 301 (605)
Q Consensus 296 ~~~~~~ 301 (605)
..+...
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 555443
No 211
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.035 Score=48.67 Aligned_cols=131 Identities=9% Similarity=0.006 Sum_probs=83.3
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHH
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--------PVEPNAIIWGTLL 487 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~ 487 (605)
+.++.+....|.+.-....+.+.++ ...+.++.....|+..-.+.|+.+.|...|+.. ++..+..+.....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3444444555555556666666655 233445555556666666666666666666633 1222333333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
..+.-++++..|...+.+..+.+|.++...+.-+-++.-.|+..+|++.++.|.+..+.+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 455666788888888888888888888877777777777888888888888888765433
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.09 E-value=0.0023 Score=45.53 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=52.4
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
...|.+.+++++|.+.++.+ ...| +...+...+.++...|++++|.+.++++++..|+++......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 35678889999999999887 4444 455777788889999999999999999999999877655443
No 213
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0088 Score=56.04 Aligned_cols=139 Identities=12% Similarity=-0.033 Sum_probs=101.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...|.+.|++..|...|++.... +. +.+.-+.++..... . .-..+++.+..++.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhhh
Confidence 45677777777777777766541 00 11111112211111 1 123467788899999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH-HHHHHHH
Q 037404 464 LKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV-ANVRLQM 540 (605)
Q Consensus 464 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 540 (605)
+.+|++...+. . .++|...+-.-..++...|+++.|+..|+++++++|.|..+...++.+-.+..++.+. .++|..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 3 3456778888899999999999999999999999999999999999888777766554 8999999
Q ss_pred HhCC
Q 037404 541 KKTR 544 (605)
Q Consensus 541 ~~~~ 544 (605)
....
T Consensus 353 F~k~ 356 (397)
T KOG0543|consen 353 FAKL 356 (397)
T ss_pred hhcc
Confidence 8753
No 214
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.00 E-value=0.09 Score=46.31 Aligned_cols=143 Identities=13% Similarity=0.114 Sum_probs=74.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFG--PDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
-.....+...|++++|...|+++...... --......++.++.+.|+++.|...++..++.+.-.|... +.....+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~g~ 87 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYMLGL 87 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHHHH
Confidence 33445566677777777777777764211 1123445566667777777777777777766433333221 11111111
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----------------hHHHHH
Q 037404 459 GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-----------------NYTMLS 521 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----------------~~~~l~ 521 (605)
+..+...... ......+...+|...++.+++..|+++- .-..++
T Consensus 88 ~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 88 SYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp HHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100000000 0011223344555666666665666542 234578
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..|.+.|.+..|..-++.+++.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 8999999999999999999984
No 215
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.97 E-value=0.63 Score=48.61 Aligned_cols=116 Identities=7% Similarity=0.103 Sum_probs=67.9
Q ss_pred HHHHHHHhcccCCHH---HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCC---CCCHHHHHHHHH
Q 037404 415 FVGVLCACTHAGFID---KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPV---EPNAIIWGTLLG 488 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~p~~~~~~~l~~ 488 (605)
.+.++..|.+.++.. +|+-+++.... .-+.|..+--.++..|.-.|-+..|.++|+.+.+ ..|...+ .+..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHH
Confidence 345667777777655 34444444433 2233444455678888888888888888888843 3333222 2234
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
-+...|++..+...+....+...++-.-...++..-.+.|.+..-
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI 560 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKI 560 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhh
Confidence 455678888888888888887544332222333333455555443
No 216
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=0.052 Score=47.69 Aligned_cols=133 Identities=13% Similarity=0.062 Sum_probs=83.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhH-----HHHHHH
Q 037404 280 TIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV-----CNALVD 354 (605)
Q Consensus 280 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~ 354 (605)
+.++..+...|.+.-.+..+++.++...+.++.....+.+...+.||.+.|..+++...+..-..+... ......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 345556666777777778888887766566666777777777788888888888876665432323222 223333
Q ss_pred HHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYT 414 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 414 (605)
.|.-.+++..|...+.++.. .|+..-|.-.-+..-.|+..+|++.++.|... .|...+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l 321 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYL 321 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccch
Confidence 45556677777777766653 34444444444455567777777777777764 444433
No 217
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.93 E-value=0.51 Score=47.03 Aligned_cols=410 Identities=12% Similarity=0.009 Sum_probs=209.0
Q ss_pred CCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc-HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHH
Q 037404 78 PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT-YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156 (605)
Q Consensus 78 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (605)
-+...|..||.---...+.+.+..++..++.. .|--+- |......=.+.|..+.+..+|+..+. |++-+...|..+
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 34556777776554555556667777777654 333332 22222223466778888888887776 455555666666
Q ss_pred HHHHHhcCCCChHHHHHHHhccCC------CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHc---C
Q 037404 157 IDSYSKCGVVGVSLAKKLFMSMGE------RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAK---A 227 (605)
Q Consensus 157 ~~~~~~~g~~~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~---~ 227 (605)
+..+.... .+.+...+.|+.... .+...|...|..-..++++.....++++..+-...-|+..-.-|.+ .
T Consensus 120 ~~f~~n~~-~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 120 LAFLKNNN-GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHhccC-CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 55554432 166667777765543 2444677777776777777777777777744333333322221111 0
Q ss_pred ------CChHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 037404 228 ------GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDG-DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 228 ------~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
...+.+.++-...... ..-...+ ..+......+....+. +..+++...+.
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~---------~~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~~~~~l~ 255 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAER---------SKITHSQEPLEELEIGVKDSTDPS--------------KSLTEEKTILK 255 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhh---------hhcccccChhHHHHHHHhhccCcc--------------chhhHHHHHHH
Confidence 0111111110000000 0000000 0111111111111111 01111111111
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcC---C----CCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYR---F----KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT 373 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 373 (605)
+.... --..+...-........++.-.+.. + +.+...|...+..-...|+.+.+.-+|+...
T Consensus 256 ~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercl 324 (577)
T KOG1258|consen 256 RIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCL 324 (577)
T ss_pred HHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHH
Confidence 11000 0000001111111111122211110 1 1234556667777778888888888888776
Q ss_pred CC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hH
Q 037404 374 KK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VE 449 (605)
Q Consensus 374 ~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 449 (605)
-| -...|--.+.-....|+.+-|..++....+--++-.+.+-..-...+...|+++.|..+++.+..+ . |+ ..
T Consensus 325 i~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~ 401 (577)
T KOG1258|consen 325 IPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVE 401 (577)
T ss_pred hHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-Cchhh
Confidence 44 224455555555555888888877776665433333332222223355678999999999999884 4 54 33
Q ss_pred HHHHHHHHhhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEAL---RLVQSM-PVEPNAIIWGTLLG-----ACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
.-..-+....+.|+.+.+. +++... +..-+..+...+.- .+.-.++.+.|..++.++.+..|++...|..+
T Consensus 402 ~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~ 481 (577)
T KOG1258|consen 402 VVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLEL 481 (577)
T ss_pred hHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHH
Confidence 3334455667888888887 555444 22222222222221 23345789999999999999999999999988
Q ss_pred HHHHHhcC
Q 037404 521 SNIFAATG 528 (605)
Q Consensus 521 ~~~~~~~g 528 (605)
.......+
T Consensus 482 ~~~~~~~~ 489 (577)
T KOG1258|consen 482 IRFELIQP 489 (577)
T ss_pred HHHHHhCC
Confidence 88876665
No 218
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.89 E-value=0.0082 Score=53.38 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=67.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-------PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTM 519 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~ 519 (605)
.|+.-+. +.+.|++.+|...|... ...|+...| |+.++...|+++.|...|..+.+..|++ |+.+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4554443 44667788888777765 133455555 7888888888888888888888876654 456888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037404 520 LSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|+.+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888889999999888888874
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.85 E-value=0.19 Score=50.04 Aligned_cols=194 Identities=17% Similarity=0.160 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
-+.+.-++++.+.|-.|+... +...|+-.|.+.+|.++|.+--.. +..+.+|....-++.|.+++...
T Consensus 617 L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyTDlRMFD~aQE~~~~g 684 (1081)
T KOG1538|consen 617 LELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYTDLRMFDYAQEFLGSG 684 (1081)
T ss_pred HHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHHHHHHHHHHHHHhhcC
Confidence 344445566777776677654 334556677777777776543221 22344454445555555554332
Q ss_pred CCC--------------ChhHHHHHHHHHHHcCChHHHHHHHH------HHHHCCCC---CCHHHHHHHHHHhcccCCHH
Q 037404 373 TKK--------------DLVSWNAMLYGLAMHGQGEKALGLFS------RMKDEGFG---PDKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 373 ~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~------~m~~~g~~---p~~~~~~~ll~~~~~~g~~~ 429 (605)
... ++.-=.+....+...|+.++|..+.- -+.+-+-+ .+..+...+..-+.+...+.
T Consensus 685 ~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 685 DPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred ChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccc
Confidence 210 11111122333445566666554421 11111111 23344555555555666677
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC-CCCCHH-----------HHHHHHHHHHhcCCHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-VEPNAI-----------IWGTLLGACRKHNAVE 497 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p~~~-----------~~~~l~~~~~~~g~~~ 497 (605)
.|-++|.++-. ...+++.....+++++|..+-++.+ ..||.. -|...-.+|.+.|+..
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~ 834 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQR 834 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchH
Confidence 77777777633 2456777788888888888888773 334332 1222335566666666
Q ss_pred HHHHHHHHHHh
Q 037404 498 LAEEVLDCLIR 508 (605)
Q Consensus 498 ~A~~~~~~~~~ 508 (605)
+|.++++++..
T Consensus 835 EA~~vLeQLtn 845 (1081)
T KOG1538|consen 835 EAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHhhh
Confidence 66666666554
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.82 E-value=0.0027 Score=45.89 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-------P-VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.+++.+...|...|++++|++.|++. + ..|+ ..++..++.++...|++++|+++++++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35666666777777777777666655 1 1122 456777888888888888888888888764
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.093 Score=47.54 Aligned_cols=105 Identities=15% Similarity=0.016 Sum_probs=81.2
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCCC-CHHHH
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG---RLKEALRLVQSM-PVEP-NAIIW 483 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~ 483 (605)
+-|...|..|...|...|+.+.|...|....+ -.++++..+..+..++..+. +..++..+|+++ ..+| |....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 34677888899999999999999999998877 34556667777777665443 466888899988 4444 45577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
..|...+...|++.+|...++.+++..|.+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 77788899999999999999999998876543
No 222
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.77 E-value=0.037 Score=51.80 Aligned_cols=132 Identities=8% Similarity=-0.021 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHh---hCC-CCch
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRM----KDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERD---YGI-LPQV 448 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~ 448 (605)
..|..+...|.-.|+++.|+..-+.- ++-|-+. ....+..+..++.-.|+++.|.+.|+....- .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666666677778888888765432 2223111 2345777888888899999999888765431 111 1234
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-------P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.+..+|...|.-..++++|+.++.+- + .--....+.+|..++-..|..++|..+.+..++.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45667888888888889998887643 1 1124567778889999999999999988887765
No 223
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.4 Score=47.91 Aligned_cols=105 Identities=13% Similarity=0.115 Sum_probs=56.4
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
..|-.+.+.++-.++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-++
T Consensus 728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhh
Confidence 3334444444444444444455555555555566666777777766542 3456667777888888777666
Q ss_pred hHHhhCCCCchHH-----------HHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 438 MERDYGILPQVEH-----------YGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 438 ~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
..+ +.|++.. |.-.-.+|.+.|+-.+|.++++++
T Consensus 799 hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 799 HPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred Ccc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 533 3333221 111223455555555555555554
No 224
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.70 E-value=0.62 Score=44.61 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=96.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
-..+|.+.+..-.+....+.|..+|-+..+.| +.++...+++++..+ ..|+..-|..+|+.-.. .++.+...-+..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~--~f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLL--KFPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHH--hCCCchHHHHHH
Confidence 34567777777777788888888888888887 556777777777654 45777788888877655 233333333456
Q ss_pred HHHhhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 455 IDLLGRSGRLKEALRLVQSM--PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
+.-+.+.++-+.|..+|+.. .+..+ ..+|..++.--..-|+...+..+-+++.+..|..
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 66777888888888888865 22223 5577777777777888888888888888877764
No 225
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.63 E-value=0.019 Score=49.16 Aligned_cols=88 Identities=9% Similarity=0.160 Sum_probs=64.2
Q ss_pred CCcccHHHHHHHHH-----hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------------CchHHHHH
Q 037404 274 KTLVPWTIIISGYA-----EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES----------------GLLGLGMK 332 (605)
Q Consensus 274 ~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~~ 332 (605)
++..+|..++..|. +.|..+=....++.|.+-|+.-|..+|+.|+..+=+. .+-+.|.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 33344444444444 3466777777888888888888888888888876542 24467888
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 333 VHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
++++|...|+-||..++..+++.+.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 89999999999999999988888866543
No 226
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.03 Score=48.00 Aligned_cols=88 Identities=17% Similarity=0.282 Sum_probs=54.2
Q ss_pred CCChhHHHHHHHHHHH-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----------------CHHHHH
Q 037404 374 KKDLVSWNAMLYGLAM-----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG----------------FIDKGV 432 (605)
Q Consensus 374 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------------~~~~a~ 432 (605)
.++-.+|..++..|.+ .|..+=....++.|.+-|+.-|..+|+.|+..+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4455666666666654 3566667777888888898889999999988776521 122344
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcC
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSG 462 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (605)
+++++|.. +|+.||.+++..+++.+++.+
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 55555544 355555555555555444433
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.58 E-value=0.071 Score=42.70 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=65.8
Q ss_pred HHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch---HHHHHHHHH
Q 037404 454 MIDLLGRSGRLKEALRLVQSM----PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN---YTMLSNIFA 525 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~ 525 (605)
-+....+.|++++|.+.|+.+ +..| ....-..++.++.+.|++++|...+++.++++|.++.+ +...|-++.
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 345556888999999998887 2222 23455678899999999999999999999999988753 445555555
Q ss_pred hcCC---------------hHHHHHHHHHHHhC
Q 037404 526 ATGD---------------WNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~---------------~~~A~~~~~~~~~~ 543 (605)
++.. ..+|..-|+++++.
T Consensus 96 ~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 96 EQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred HHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 5544 66777777777764
No 228
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.57 E-value=0.013 Score=48.62 Aligned_cols=61 Identities=21% Similarity=0.207 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..++..+...|++++|...+++++..+|.+...|..++.+|...|+..+|.++|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556777788899999999999999999999999999999999999999999999999864
No 229
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.12 Score=46.60 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=78.9
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGT---LLGACRKHNAVE 497 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~ 497 (605)
.....|+..+|...|..... -.+-+...-..++.+|...|+.+.|..++..++..-...-+.. -+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 35567788888888887776 3344456666788888888888888888888853322222222 233333333333
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...+-.+ ...+|+|...-..++..+...|+.++|.+.+=.+..+
T Consensus 221 ~~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33333332 3338888888888888888889988888888777764
No 230
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.50 E-value=0.041 Score=42.56 Aligned_cols=91 Identities=15% Similarity=0.091 Sum_probs=70.7
Q ss_pred HHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCC---chHHHHHHHHHhcC
Q 037404 455 IDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-GSDP---GNYTMLSNIFAATG 528 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g 528 (605)
..++...|+++.|++.|.+. . .+..+..||.-..++.-.|+.++|+.-+.+++++. |... ..|..-+.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34567788999999998876 2 33457788888999999999999999999999885 3322 23556677888889
Q ss_pred ChHHHHHHHHHHHhCCC
Q 037404 529 DWNKVANVRLQMKKTRA 545 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~~ 545 (605)
+.+.|..-|+...+.|.
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999998888664
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.46 E-value=0.26 Score=38.47 Aligned_cols=140 Identities=11% Similarity=0.162 Sum_probs=86.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
..-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+ ..| ...+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk----iFD----------is~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK----IFD----------ISKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG----GS-----------GGG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh----hcC----------chhhcchHH
Confidence 34567788888888877763 2445566665444444444444555555433 222 134566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
....+-.++ .+.......+.....+|+-+.-.+++..+.+....+|..+.-++.+|.+.|+..++-+++.++=+.|+
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 666665554 34555666778888999999999999998876677789999999999999999999999999988875
No 232
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.41 E-value=0.69 Score=41.70 Aligned_cols=197 Identities=17% Similarity=0.105 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT-----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
..........+...+++..+...+.... ......+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 3445555666666666666666665543 2234455555666666677777777777776643222 111222222
Q ss_pred -HhcccCCHHHHHHHHHHhHHhhCC--CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcC
Q 037404 421 -ACTHAGFIDKGVQYFYSMERDYGI--LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN--AIIWGTLLGACRKHN 494 (605)
Q Consensus 421 -~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g 494 (605)
.+...|+++.|...+..... ... ......+......+...++.+++...+.+. ...++ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 57777888888888877743 111 122333444444466777888888887776 33333 566777777777788
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+++.|...+..+....|.....+..++..+...|.++++...+.+.....
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888777755666677777666677888888888877753
No 233
>PRK11906 transcriptional regulator; Provisional
Probab=96.36 E-value=0.085 Score=51.03 Aligned_cols=63 Identities=3% Similarity=-0.130 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.....++.+....++++.|...|+++..++|+.+.++...+++..-.|+.++|.+.+++..+
T Consensus 338 a~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 338 GKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 334444444444444455555555555555555555555555555555555555555555443
No 234
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.31 E-value=0.027 Score=54.27 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=63.2
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA----IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
.+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|++++|+..++++++..+. .|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHH
Confidence 34667788888888888888888888875 556663 34788888888888888888888888886211 12111
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCCC
Q 037404 521 SN--IFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 521 ~~--~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.. .+....+.++..++++.+.+.|.
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 11 12223344566666666666554
No 235
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.25 E-value=0.27 Score=49.48 Aligned_cols=161 Identities=13% Similarity=0.061 Sum_probs=102.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCCCchH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDK-----YTFVGVLCACTH----AGFIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344455555667777777766655422 11111 123333333332 45677888888888763 35544
Q ss_pred HHH-HHHHHhhhcCCHHHHHHHHHhCC-C-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH-HHH
Q 037404 450 HYG-CMIDLLGRSGRLKEALRLVQSMP-V-----EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT-MLS 521 (605)
Q Consensus 450 ~~~-~l~~~~~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~-~l~ 521 (605)
.|. .-...+...|++++|++.|+++- . +.....+--++..+.-..++++|...+.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 444 34566778899999999998752 1 112334555677788889999999999999987655555544 444
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHhC
Q 037404 522 NIFAATGDW-------NKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~-------~~A~~~~~~~~~~ 543 (605)
-++...|+. ++|.+++.++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 556788888 8888888888764
No 236
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.24 E-value=0.1 Score=44.53 Aligned_cols=154 Identities=19% Similarity=0.138 Sum_probs=90.5
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcCCH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 464 (605)
|-..|-++-|.--|.+... +.|+. ..||.+.--+...|+++.|.+.|+...+ +.|. ..+...-.-++.-.|++
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E---LDp~y~Ya~lNRgi~~YY~gR~ 149 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE---LDPTYNYAHLNRGIALYYGGRY 149 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc---cCCcchHHHhccceeeeecCch
Confidence 4444555555555665554 56754 5688777778899999999999998865 3443 22333333345567888
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHH--------------HHHHhcCC--HH-----------HHHHHHHHHHhhcCCC
Q 037404 465 KEALRLVQSM----PVEPNAIIWGTLL--------------GACRKHNA--VE-----------LAEEVLDCLIRLKGSD 513 (605)
Q Consensus 465 ~~A~~~~~~~----~~~p~~~~~~~l~--------------~~~~~~g~--~~-----------~A~~~~~~~~~~~p~~ 513 (605)
.-|.+-+... +..|-...|.-+. .-+..+.+ +. ..+.+++++..-..++
T Consensus 150 ~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 150 KLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 8887766554 3333333332222 11111110 00 0112222322222222
Q ss_pred -------CchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 514 -------PGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 514 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+|+.|++-+...|+.++|..+++-.+..++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 25789999999999999999999999887543
No 237
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.22 E-value=0.069 Score=49.23 Aligned_cols=164 Identities=12% Similarity=0.017 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCC---HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC----CchHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKD-EGFGPD---KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL----PQVEH 450 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~ 450 (605)
.|..+.+++-+..++.+++.+-+.-.. .|..|. .....++..+....+.++++.+.|+.+.+-..-. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344444444444444444444333222 122221 1223345556666667777777777665421111 12345
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLK------GS 512 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~ 512 (605)
+-.|...|.+..++++|+-+..++ ++..- ......+.-++...|....|.+..+++.++. +.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 667777777777777766555443 21111 1123334456667777777777777776652 22
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 513 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.......++++|...|+.+.|..-|+++..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 334455677777777777777777766654
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.06 E-value=0.074 Score=47.50 Aligned_cols=100 Identities=14% Similarity=0.083 Sum_probs=67.1
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC---chHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-HHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILP---QVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN-AIIWGT 485 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~ 485 (605)
.|+.-+. +.+.|++..|...|...++ +.+- ....+-.|++.+...|++++|..+|..+ +..|- +..+.-
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3444443 3455667777777777766 3332 2344556777888888888888777766 32232 456667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
|..+..+.|+.++|...|+++.+..|..+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777888888888888888888888876654
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.73 Score=41.81 Aligned_cols=173 Identities=14% Similarity=0.036 Sum_probs=114.6
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 364 NAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 364 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
...+++++...+....-..-.......|++.+|..+|+...... .-+...-..+..+|...|+.+.|..++..+-.+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44455555554422222233445677899999999999888753 234566677888999999999999999887542 1
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHH
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTML 520 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l 520 (605)
-.........-+..+.+.....+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..+
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11111122233455555555555555555553345 56666778888999999999999988888764 4567788889
Q ss_pred HHHHHhcCChHHHHHHHH
Q 037404 521 SNIFAATGDWNKVANVRL 538 (605)
Q Consensus 521 ~~~~~~~g~~~~A~~~~~ 538 (605)
+.++.-.|.-+.+...+.
T Consensus 279 le~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 279 LELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999888886665444443
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=96.00 E-value=0.16 Score=41.74 Aligned_cols=85 Identities=8% Similarity=-0.071 Sum_probs=40.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
+...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|+..|..+.. .. .-|+..+-....+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHH
Confidence 344555555555555554432 11333344444445555555555555554433 11 1222233334455555555555
Q ss_pred HHHHHHhC
Q 037404 467 ALRLVQSM 474 (605)
Q Consensus 467 A~~~~~~~ 474 (605)
|...|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 55555544
No 241
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.00 E-value=2.6 Score=44.39 Aligned_cols=50 Identities=8% Similarity=-0.067 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
...++++.+...+..+-......+...+-+++++...|+.++|..+|+++
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455544444444433322233344445555544455555555555554
No 242
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=95.92 E-value=5.1 Score=47.21 Aligned_cols=310 Identities=11% Similarity=0.031 Sum_probs=171.3
Q ss_pred HHHHHHcCCChHHHHHHHHhC----CCCC--hhHHHHHHHHHHhcCCHHHHHHHHhh-CCCCCcccHHHHHHHHHhCCCh
Q 037404 220 ILDGYAKAGEMNLAFELFEKI----PHRN--IVSWSTMVWGYSKDGDMEMAKLLFDR-MPAKTLVPWTIIISGYAEKGMA 292 (605)
Q Consensus 220 ll~~~~~~~~~~~a~~~~~~~----~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 292 (605)
+..+-.+.+.+..|.-.++.- .+.+ ...+..+...|...+++|...-+... ..++ +....|......|++
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNW 1465 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccH
Confidence 344555667777777777762 2222 23455566688888888887777663 2222 233455566778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGM 372 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 372 (605)
..|...|+.+.+.+ ++...+++.++......|.++...-..+-......+-....++.=+.+-.+.++++.......
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~-- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS-- 1542 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh--
Confidence 99999999998764 333667777777777777777666554444332222122333444555577788887777665
Q ss_pred CCCChhHHHHH--HHHHHHcC--ChHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 373 TKKDLVSWNAM--LYGLAMHG--QGEKALGLFSRMKDEGFGP--------D-KYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 373 ~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
..+..+|... +....+.. +.-.-.+..+.+++.-+.| + ...|..++....- .++-....
T Consensus 1543 -~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l-------~el~~~~~ 1614 (2382)
T KOG0890|consen 1543 -DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLL-------LELENSIE 1614 (2382)
T ss_pred -cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 4455555544 23332222 2112222333333321111 0 0122222221110 01111111
Q ss_pred HhhCCCCchH------HHHHHHHHhhhcCCHHHHHHHHHhC----CCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 440 RDYGILPQVE------HYGCMIDLLGRSGRLKEALRLVQSM----PVE-----PNAIIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 440 ~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
...++.++.. .|..-+..-....+..+-+--+++. ..+ --..+|...++.....|.++.|...+-
T Consensus 1615 ~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall 1694 (2382)
T KOG0890|consen 1615 ELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALL 1694 (2382)
T ss_pred HhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 1112233211 1222221111111111111111111 112 235688889999999999999999998
Q ss_pred HHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 505 CLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 505 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.+.+.. -+.++...+..++..|+-..|+.++++..+...
T Consensus 1695 ~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1695 NAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 888876 466889999999999999999999999997654
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.90 E-value=1.2 Score=39.98 Aligned_cols=197 Identities=16% Similarity=0.122 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-hhHHHHHHH-H
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKY-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KD-LVSWNAMLY-G 386 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~-~ 386 (605)
.........+...+++..+...+...... ........+......+...++...+.+.+..... ++ ......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44445555555566666665555555432 2233344555566666666777777777776553 21 122333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhc
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGP----DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRS 461 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 461 (605)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... ..+. ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8888999999999998855 233 233344444456778899999999999877 3344 467788888889999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 462 GRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999999887 44454 445555555566777899999999999998877
No 244
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.84 E-value=0.32 Score=39.10 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGF--GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
.....+.|++++|.+.|+.+...-. .-....-..++.+|.+.+++++|...+++.++-+.-.|++ -|.....+++..
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3344456666666666666665411 1122344555666666666666666666666532222221 233333332222
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 462 GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 462 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
...+..+.-+- +.+ ...+....|..-|+++++..|++.-
T Consensus 96 ~~~~~~~~~~~--~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDEGSLQSFF--RSD-------------RDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhhhHHhhhc--ccc-------------cCcHHHHHHHHHHHHHHHHCcCChh
Confidence 21111111110 111 1112356788888999988888763
No 245
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.79 E-value=0.035 Score=32.10 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
.+..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666677777777777777777766653
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=0.88 Score=39.90 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC----CCCchHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG----ILPQVEHYGCM 454 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~~l 454 (605)
.|+--...|...|.++.|-..+++.-+. ...-++++|+++|++...-.. ..--...+...
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~ 156 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKC 156 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHh
Confidence 3444455666666666666555554321 122234444444444332100 00112234445
Q ss_pred HHHhhhcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cCCCCchHHHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQSMP-------VEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRL----KGSDPGNYTMLSN 522 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~ 522 (605)
...+.+..++++|-..+.+-+ --|+. ..+...+-.+....++..|...++.-.++ .|.+..+...|+.
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 556667777777666655441 11222 23444444555566788888888776654 3555666666766
Q ss_pred HHHhcCChHHHHHHH
Q 037404 523 IFAATGDWNKVANVR 537 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~ 537 (605)
.| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 55 567777666654
No 247
>PRK11906 transcriptional regulator; Provisional
Probab=95.77 E-value=0.58 Score=45.54 Aligned_cols=143 Identities=11% Similarity=0.045 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhc---------ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 393 GEKALGLFSRMKD-EGFGPDK-YTFVGVLCACT---------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 393 ~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
.+.|+.+|.+... ..+.|+. ..|..+..++. ...+..+|.++-+...+ --+-|......++.++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567777777662 2245543 23333332221 12345566777777766 3445677777778877888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH--HHHHHHHhcCChHHHHHHH
Q 037404 462 GRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT--MLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~ 537 (605)
|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++++++.|....+-. ..++.|+.. ..++|+.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 8899999999988 55666 457777777788889999999999999999987654433 333445544 456677766
Q ss_pred H
Q 037404 538 L 538 (605)
Q Consensus 538 ~ 538 (605)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 4
No 248
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.76 E-value=0.13 Score=42.62 Aligned_cols=71 Identities=21% Similarity=0.228 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEHY 451 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~ 451 (605)
...++..+...|++++|..+++++.... +.+...+..++.++...|+...|.+.|+.+.. +.|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3445556666777777777777777642 33556677777777777777777777766543 34666665543
No 249
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.73 E-value=1.4 Score=39.27 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=93.2
Q ss_pred HHHhcCChHHHHHHHhcCCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcc---
Q 037404 355 MYAKCGSLDNAMSVFNGMTKKD------LVSWNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCACTH--- 424 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~--- 424 (605)
.-.+.|++++|.+.|+.+.... ..+.-.++.++.+.++++.|+..+++..... -.||. .|...+.+.+.
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~ 121 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQ 121 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhcc
Confidence 3456677777777777766321 2344455666777788888888887766642 22322 23333333221
Q ss_pred ----cCCHHH---HHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCC
Q 037404 425 ----AGFIDK---GVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAII--WGTLLGACRKHNA 495 (605)
Q Consensus 425 ----~g~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~ 495 (605)
..+... |..-|+..+.+ . || ..-...|..-+..+. |... =..+..-|.+.|.
T Consensus 122 i~~~~rDq~~~~~A~~~f~~~i~r--y-Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 122 IDDVTRDQSAARAAFAAFKELVQR--Y-PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGA 182 (254)
T ss_pred CCccccCHHHHHHHHHHHHHHHHH--C-CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcC
Confidence 112222 22333333331 1 11 111112222111110 1111 1245677889999
Q ss_pred HHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 496 VELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+..|..-++++++..|+.+ ..+..+..+|.+.|-.++|...-+-+..
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999999999866554 4566777889999999999887554443
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.73 E-value=0.027 Score=32.60 Aligned_cols=32 Identities=19% Similarity=0.017 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
.+|..++.++...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777777777777777777777765
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.69 E-value=1 Score=43.09 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCC---Ccc-c---HHHHHHHHHh---CCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 250 TMVWGYSKDGDMEMAKLLFDRMPAK---TLV-P---WTIIISGYAE---KGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 250 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~-~---~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
.++-+|-...+++...++++.+... +.. . --...-++.+ .|+.++|+.++..+......++..++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444566666666666666665533 111 1 1123334445 7788888888877665555667777766655
Q ss_pred HH
Q 037404 320 AC 321 (605)
Q Consensus 320 ~~ 321 (605)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 252
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.62 E-value=0.056 Score=45.36 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=66.2
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEPN------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
..-+.+.|++++|..-|..+ ...|. ...|..-..++.+.+.++.|+.-..+++++.|....++..-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34456777788877777665 21121 233444456677888888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhCCC
Q 037404 528 GDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~~~ 545 (605)
.++++|++-|+++.+..+
T Consensus 182 ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDP 199 (271)
T ss_pred hhHHHHHHHHHHHHHhCc
Confidence 888888888888888543
No 253
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.47 E-value=0.23 Score=39.37 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 408 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|++
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3445555555555555555555555555555554454444444444443
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=2.5 Score=44.13 Aligned_cols=176 Identities=14% Similarity=0.069 Sum_probs=109.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
...-++...+...++-|..+-+.-....... ......-+.+.|++++|...|-+-+.. +.|. .++.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence 4455666677777777777766543221111 233344556788888888888776543 3332 344555666
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh-hHHHHHHHHHHHcCChHHHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL-VSWNAMLYGLAMHGQGEKALGLFSRM 403 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m 403 (605)
.....-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+...+... .-....+..+.+.+-.++|..+-.+.
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 6666777777777777765 556667888999999998888888776652211 12445566666667777776665544
Q ss_pred HHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHh
Q 037404 404 KDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438 (605)
Q Consensus 404 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (605)
.. +......+ +...+++++|.++++.+
T Consensus 490 ~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 490 KK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred cc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 32 22233333 45677888888888765
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=0.19 Score=45.96 Aligned_cols=160 Identities=11% Similarity=-0.018 Sum_probs=119.6
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH----HHHHHHhhhcCC
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY----GCMIDLLGRSGR 463 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 463 (605)
...|++.+|-..++++.+. .+.|...+...=.+|...|+...-...++++.- ...++...| ..+..++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999998885 455777788888899999999999999998876 445555433 345556678999
Q ss_pred HHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCchHHHHHHHHHhcCChHHHHHHH
Q 037404 464 LKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
+++|++.-++. .+. .|...-.+....+.-.|++.++.++..+-...=.. -...|-..+-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999987 443 45667777888888889999999998775432111 1234556777788889999999999
Q ss_pred HHHHhCCCCCCCc
Q 037404 538 LQMKKTRAQKPSG 550 (605)
Q Consensus 538 ~~~~~~~~~~~~~ 550 (605)
++-+-.....+.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 9887655554444
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=4.5 Score=42.38 Aligned_cols=180 Identities=11% Similarity=-0.002 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCch----HHHHHHHHHHHhC------------CCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcc-
Q 037404 19 EKLQNLHKCKNLN----QTKQLFAQIIKLD------------LQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVH- 81 (605)
Q Consensus 19 ~~~~~l~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 81 (605)
+...++..+++.- -..++.+.+...+ .....-..-.-+..+.+...++-|..+...-.-+.-.
T Consensus 288 ~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~ 367 (933)
T KOG2114|consen 288 RIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTL 367 (933)
T ss_pred heeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHH
Confidence 4455555555442 2245555555555 1111223334566667777777777776654321111
Q ss_pred --cHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 037404 82 --LYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159 (605)
Q Consensus 82 --~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (605)
....-.+-+.+.|++++|...|-+-... +.| ..+++-+...........+++.+.+.|+. +...-..|+.+
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLnc 440 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHH
Confidence 1222234556678888887777665432 222 23444555555556666677777777654 44445667777
Q ss_pred HHhcCCCChHHHHHHHhccCCCCee-hHHHHHHHHHhCCChhHHHHHHh
Q 037404 160 YSKCGVVGVSLAKKLFMSMGERDIV-SWNSMIAGLVKGGELSEARRLFD 207 (605)
Q Consensus 160 ~~~~g~~~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 207 (605)
|.+.+ +.+...+..+........ -....+..+.+.+-.++|.-+-.
T Consensus 441 YiKlk--d~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 441 YIKLK--DVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHhc--chHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 77777 777776666665521111 23344444444454444444433
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.27 E-value=0.75 Score=45.69 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=95.9
Q ss_pred HHHHHhCCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 283 ISGYAEKGMAKEAARLYDQME-EAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
.+.....++++.+.+..+.-. -..++ ......++.-+.+.|.++.|.++... + ..-.+...++|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~ 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGN 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCC
Confidence 344455677777666654111 11111 33456677777777877777776432 2 123455677888
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
++.|.++.++.. +...|..|.......|+++-|.+.|++... |..|+-.|...|+.+.-.++.+.....
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888877655 566888888888888888888888886543 455666677778877766666665541
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
| -++....++...|+.++..+++.+.+
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 1 24455555666788888777777765
No 258
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.25 E-value=1.7 Score=42.66 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=69.2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHH
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP-V-EPNA--IIWGTLLGAC 490 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~ 490 (605)
=..+..++-+.|+.++|++.+.++.++.....+..+...|+.++...+.+.++..++.+-. + -|.. ..|+..+--+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka 341 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence 3456677788999999999999998754333355677889999999999999999998873 1 1332 2455444332
Q ss_pred HhcCC---------------HHHHHHHHHHHHhhcCCCC
Q 037404 491 RKHNA---------------VELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 491 ~~~g~---------------~~~A~~~~~~~~~~~p~~~ 514 (605)
...++ -..|.+.+.++.+.+|.-|
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22222 2346788889988887765
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.23 E-value=0.25 Score=39.21 Aligned_cols=44 Identities=25% Similarity=0.480 Sum_probs=20.4
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHH
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLL 487 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~ 487 (605)
..|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344445555555555555555555544433 3333344444444
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.18 E-value=1.1 Score=43.94 Aligned_cols=61 Identities=11% Similarity=0.033 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+-..+..++.+.|+.++|++.++++.+..|. +-.+...|+.++...+.+.++..++.+.-+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3345666677778888888888888776654 345677788888888888888888877654
No 261
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=5.6 Score=41.36 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=45.9
Q ss_pred hhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCC-CCcchHHHHHHHHHc
Q 037404 152 VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAK 226 (605)
Q Consensus 152 ~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~ 226 (605)
+...++..+...| +++.|.+..-.|-..+..-|...+..+...++......++-.-.. -+...|..++..+..
T Consensus 394 v~~~yI~HLl~~~--~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 394 VGKTYIDHLLFEG--KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHhcc--hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 4556677777777 777777777777777777777777777776665554443332211 244566666666655
No 262
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.88 E-value=7.4 Score=42.62 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=84.5
Q ss_pred CChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCc
Q 037404 197 GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTL 276 (605)
Q Consensus 197 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 276 (605)
++++.|+.-+..+. ...|.-.++.--+.|-++.|..++..-.+.-...|.+....+.....+++|.-+|+..-+
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk--- 967 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK--- 967 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---
Confidence 44555554444442 112233333334455555555555433333334444555555556666666655555432
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 037404 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGT--LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVD 354 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 354 (605)
...-+.+|...|+|.+|+.+-.++-. .-|... -..|...+...+++-+|-++..+.... ..-.+.
T Consensus 968 --lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ 1034 (1265)
T KOG1920|consen 968 --LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVA 1034 (1265)
T ss_pred --HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHH
Confidence 12235566667888888888776643 112221 145566667777777777776665432 123445
Q ss_pred HHHhcCChHHHHHHHhcCCC
Q 037404 355 MYAKCGSLDNAMSVFNGMTK 374 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~ 374 (605)
.|++...+++|.++......
T Consensus 1035 ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1035 LLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HHhhHhHHHHHHHHHHhccc
Confidence 56677777777776655443
No 263
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.84 E-value=4.1 Score=39.39 Aligned_cols=128 Identities=14% Similarity=0.163 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhC-CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYG-ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAII-WGTLLGA 489 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~ 489 (605)
..|...+....+..-.+.|..+|-++.+. + ..+++.++++++..+ ..|+..-|-.+|+-- ..-||... .+-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 44666777777788899999999999884 6 677888999998866 467888899999865 33455444 4556677
Q ss_pred HHhcCCHHHHHHHHHHHHhhcC--CCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 490 CRKHNAVELAEEVLDCLIRLKG--SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+...++-+.|..+|+..++.-. .-..+|..++.--..-|+...+..+=+++.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 7788999999999998776532 2356788888888888999888887777765
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.82 E-value=3.4 Score=38.48 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=13.5
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037404 488 GACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~ 507 (605)
..+.+.++++.|.+.|+-+.
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 33456778888888777554
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.67 E-value=2 Score=35.08 Aligned_cols=123 Identities=14% Similarity=0.124 Sum_probs=50.6
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 200 (605)
++..+...+.......+++.+.+.+. .+....+.++..|++.+ .....+.++. ..+......+++.|.+.+.++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~---~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD---PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC---HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 33444334444444444444444432 34444555555555432 2222233331 122223333444444444444
Q ss_pred HHHHHHhhcCCCCcchHHHHHHHHHcC-CChHHHHHHHHhCCCCChhHHHHHHHHHH
Q 037404 201 EARRLFDEMPERDAVSWNTILDGYAKA-GEMNLAFELFEKIPHRNIVSWSTMVWGYS 256 (605)
Q Consensus 201 ~A~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 256 (605)
++.-++.++.. +...+..+... ++.+.|.+.+.+. .+...|..++..+.
T Consensus 87 ~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 87 EAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 44444444311 11122222222 5555566555542 23445555554443
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.65 E-value=1.2 Score=41.45 Aligned_cols=127 Identities=15% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHhcccCCHHHHHHHHHHhHH---hhCCCCch-----H
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGF---GP--DKYTFVGVLCACTHAGFIDKGVQYFYSMER---DYGILPQV-----E 449 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~-----~ 449 (605)
|..++...+.++++++.|+...+-.- .| ....+..|-..|....++++|.-+..++.+ ..++..-. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44455555555555555555443110 11 113344555555555555555544433322 11211111 1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
....+..++...|.+..|.+..++. +.++. ......+...|...|+.+.|..-|+.+...
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 1222334455555555555555443 22222 234445556666666666666666665543
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.55 E-value=0.92 Score=41.72 Aligned_cols=156 Identities=13% Similarity=0.004 Sum_probs=108.7
Q ss_pred HhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--H--HHHHHHHhcccCCHH
Q 037404 357 AKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY--T--FVGVLCACTHAGFID 429 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~--~~~ll~~~~~~g~~~ 429 (605)
...|+..+|-..++++. +.|..++.-.=.+|...|+.+.-...++++... ..|+.. + -..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677777777777776 447778888888999999999999999988764 234442 2 233445567899999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPN------AIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
+|++.-++..+ -.+.|.-.-.+....+...|++.++.++..+-...-+ ...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888865 2334555666788888899999999999887632111 122333344456678999999999
Q ss_pred HHHH--hhcCCCCc
Q 037404 504 DCLI--RLKGSDPG 515 (605)
Q Consensus 504 ~~~~--~~~p~~~~ 515 (605)
++-+ +...+|..
T Consensus 271 D~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 271 DREIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHHhhccchh
Confidence 7633 33455553
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.54 E-value=0.076 Score=32.98 Aligned_cols=32 Identities=9% Similarity=0.187 Sum_probs=28.7
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
|.++..++.+|.+.|++++|+++++++.+..+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45788999999999999999999999999654
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.53 E-value=0.077 Score=31.19 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+|..|+.+|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788889999999999999988553
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.50 E-value=2.8 Score=41.75 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=78.8
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 037404 184 VSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEM 263 (605)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (605)
...+.++.-+.+.|..+.|+.+-.. . ..-.....+.|+++.|.++.+... +...|..|.+...+.|+++-
T Consensus 296 ~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~l 365 (443)
T PF04053_consen 296 DQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIEL 365 (443)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHH
Confidence 3466777777778888887776543 1 123344556777777777765543 55678888888888888888
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 037404 264 AKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334 (605)
Q Consensus 264 a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (605)
|++.|.+..+ |..|+-.|...|+.++..++.+.....|- ++....++.-.|+.++..+++
T Consensus 366 Ae~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 366 AEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHH
Confidence 8888877653 66677777777777776666666655441 233333444445555444443
No 271
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=94.42 E-value=0.098 Score=47.84 Aligned_cols=113 Identities=6% Similarity=-0.063 Sum_probs=78.5
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 496 (605)
..-|.++|.+++|+..|...+. -.+-|+.++..-..+|.+..++..|..-...+ .+. --...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4568889999999999988765 23338888888889999999998887766655 211 1123455555555566888
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHH
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
.+|.+-++.++++.|.+- .|-..+.+.....|+.-+.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~ 218 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIAT 218 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHh
Confidence 999999999999999854 3444455555555554443
No 272
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.36 E-value=5.4 Score=38.74 Aligned_cols=149 Identities=10% Similarity=-0.054 Sum_probs=83.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP---DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ--VEH 450 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 450 (605)
...+|..++..+.+.|+++.|...+.++...+... .+.....-+...-..|+..+|...++..... ....+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45677888888888899998888888887643211 2233333445566678888888888777661 11111 111
Q ss_pred HHHHHHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 451 YGCMIDLLGRSGRLKEALRL-VQSMPVEPNAIIWGTLLGACRKH------NAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
...+...+.. ..+..... ........-...+..+..-+... +..+++...|.++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000122333334444444 788999999999999999988888888877
Q ss_pred HHhc
Q 037404 524 FAAT 527 (605)
Q Consensus 524 ~~~~ 527 (605)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
No 273
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.33 E-value=0.58 Score=36.78 Aligned_cols=91 Identities=13% Similarity=0.080 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-hcCC-CCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037404 477 EPNAIIWGTLLGACRKHN---AVELAEEVLDCLIR-LKGS-DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 551 (605)
.++..+--.+.+++.++. +..+.+.+++...+ ..|. .....+.|+-.+.+.|+|+.++.+++...+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-------- 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-------- 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh--------
Confidence 455555566777776654 45667777888776 3343 3455667777888888888888888887762
Q ss_pred eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
.|+..+...+=+.+.++|.+.|.+
T Consensus 101 ------------------e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 101 ------------------EPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ------------------CCCcHHHHHHHHHHHHHHhhccee
Confidence 455666666666777777777764
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.27 E-value=2.8 Score=40.72 Aligned_cols=68 Identities=21% Similarity=0.237 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG----SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
....+|..++..+.+.|.++.|...+.++....+ ..|.+....+..+...|+..+|...++...+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3456888899999999999999999999988642 2577788889999999999999999999988433
No 275
>PRK10941 hypothetical protein; Provisional
Probab=94.23 E-value=0.54 Score=43.04 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEE
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVH 561 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (605)
..+.+-.+|.+.++++.|.++.+.++...|++|.-+..-|-+|.+.|.+..|..=++...+..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P---------------- 246 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP---------------- 246 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC----------------
Confidence 4456668889999999999999999999999999999999999999999999999999988532
Q ss_pred EEEeCCCCCCChHHHHHHHHHHHHH
Q 037404 562 EFSVCDQLHPKSEQIYQMINTLGKD 586 (605)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~l~~l~~~ 586 (605)
..|..+.+...+..++..
T Consensus 247 -------~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 -------EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred -------CchhHHHHHHHHHHHhhc
Confidence 467777788888666543
No 276
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.16 E-value=0.45 Score=37.04 Aligned_cols=88 Identities=16% Similarity=0.049 Sum_probs=55.3
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHhcC
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVE--PNAIIWGTLLGACRKHN 494 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~--p~~~~~~~l~~~~~~~g 494 (605)
+....|+.+.|++.|.+... -.+.....||.-..++.-+|+.++|++-+.+. +-+ .--..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 35566777777777777665 34445667777777777777777777766655 211 01123333445566778
Q ss_pred CHHHHHHHHHHHHhhc
Q 037404 495 AVELAEEVLDCLIRLK 510 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~ 510 (605)
+.+.|+.-|+.+-++.
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888777776654
No 277
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.13 E-value=0.31 Score=31.54 Aligned_cols=51 Identities=12% Similarity=0.155 Sum_probs=41.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGH 592 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~ 592 (605)
.++.++-++.+.|++++|.+..+.+.+ .+|+..+...+-+.++..+++.|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 467788899999999999999999998 367777888888888888887763
No 278
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.08 E-value=0.14 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4678889999999999999999996654
No 279
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.07 E-value=11 Score=41.32 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=36.6
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
+.+|...|+|.+|..+...+.. +-.--..+-..|+..+...++.-+|-++..+....|.. .+..+++...+++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHH
Confidence 3445555555555555544422 11111111234555555556666666555554322211 1223344445666
Q ss_pred HHHHHHHHH
Q 037404 499 AEEVLDCLI 507 (605)
Q Consensus 499 A~~~~~~~~ 507 (605)
|.++.....
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 665555443
No 280
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.03 E-value=0.16 Score=29.20 Aligned_cols=31 Identities=16% Similarity=0.072 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+|..+...+...|++++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555566666666666666666666666653
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.00 E-value=0.49 Score=42.28 Aligned_cols=90 Identities=11% Similarity=0.133 Sum_probs=67.6
Q ss_pred CCCcccHHHHHHHHHh-----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----------------chHHHH
Q 037404 273 AKTLVPWTIIISGYAE-----KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESG----------------LLGLGM 331 (605)
Q Consensus 273 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------------~~~~a~ 331 (605)
+++..+|...+..|.. .+.++-....++.|.+.|+.-|..+|..+++.+-+.. +-+.+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 3444455555555542 3556667777888889999999999999988765542 345678
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 332 KVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
.++++|...|+.||..+-..|++++.+.+-.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 8999999999999999999999999887653
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.95 E-value=2 Score=36.48 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=53.6
Q ss_pred HHHHhhhcCCHHHHHHHHHhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 454 MIDLLGRSGRLKEALRLVQSMPVEPNAIIWG-----TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+...+..+|++++|...++..-..|....+. .|.+.....|.+++|...++...... -.+.....-++++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 3455667777777777777552122222222 23455666777777777776544311 11223445677778888
Q ss_pred ChHHHHHHHHHHHhCC
Q 037404 529 DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 ~~~~A~~~~~~~~~~~ 544 (605)
+.++|+.-|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 8888888887777754
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.89 E-value=0.75 Score=41.21 Aligned_cols=108 Identities=20% Similarity=0.254 Sum_probs=78.6
Q ss_pred HHHHhcCC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-----------
Q 037404 366 MSVFNGMT--KKDLVSWNAMLYGLAMH-----GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF----------- 427 (605)
Q Consensus 366 ~~~~~~~~--~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----------- 427 (605)
+..|..+. ++|-.+|...+..+... +..+-....++.|.+-|+.-|..+|..|+..+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 55667777777766543 4566667778899999999999999999988765332
Q ss_pred -----HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHH-HHHHHHHhC
Q 037404 428 -----IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK-EALRLVQSM 474 (605)
Q Consensus 428 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 474 (605)
-+=++.++++|.. +|+.||.++-..|+.++.+.+..- +..++.--|
T Consensus 134 HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2347889999988 799999999999999999888643 333443333
No 284
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.32 E-value=0.13 Score=29.62 Aligned_cols=30 Identities=7% Similarity=0.147 Sum_probs=26.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++..++.++...|++++|++.+++..+..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999999998754
No 285
>PRK09687 putative lyase; Provisional
Probab=93.31 E-value=6.9 Score=36.41 Aligned_cols=134 Identities=15% Similarity=0.019 Sum_probs=62.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC-CHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG-FIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
+..+-...+.++.+.++ .+++..+..+.+ .++...-...+.++.+.+ ....+...+..+.. .++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHH
Confidence 33333344444444444 344455444444 233333333333333332 12344444444433 2455555556
Q ss_pred HHHhhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 455 IDLLGRSGRLKEALRL-VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
+.++.+.|+. .|... ++.+. .++ .....+.++...|+. +|...+.++.+.+| |+.+-....++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a 276 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDK 276 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHH
Confidence 6666666663 33333 33333 122 223455666666664 56666666666555 44444433333
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.20 E-value=3.4 Score=32.55 Aligned_cols=61 Identities=11% Similarity=0.094 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.....+..+...|+-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445667777788887778877776533 67777777778888888888888888877776
No 287
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.04 E-value=3 Score=35.66 Aligned_cols=96 Identities=18% Similarity=0.049 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH--HH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG--CM 454 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--~l 454 (605)
.+..+...|++.|+.+.|.+.|.++.+....+.. ..+..+++.....+++..+...+.++........+...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4555666777777777777777777765444433 2355666677777777777777666654211111111111 11
Q ss_pred --HHHhhhcCCHHHHHHHHHhC
Q 037404 455 --IDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 455 --~~~~~~~g~~~~A~~~~~~~ 474 (605)
+-.+...+++.+|.+.|-..
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHcc
Confidence 12234567888888887766
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.02 E-value=0.8 Score=36.92 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=28.8
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.++.+++..++..+.-+.|..+..-..-++++...|+|++|..++....+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 4555555555555555555555555555555555555555555555555443
No 289
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.90 E-value=0.9 Score=37.35 Aligned_cols=71 Identities=18% Similarity=0.058 Sum_probs=41.1
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 459 GRSGRLKEALRLVQSM-PVEPNAIIWGTL-LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
.+.++.+++..+++.+ -.+|.......+ ...+...|++.+|+++++++.+..|..+..-..++.++...|+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 4556666776666666 334444333222 3445666777777777777666556655555555555555555
No 290
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.81 E-value=0.16 Score=29.29 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+|..++.+|...|++++|+..++++++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 468899999999999999999999999854
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.77 E-value=3.3 Score=34.65 Aligned_cols=123 Identities=14% Similarity=0.175 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC
Q 037404 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE 180 (605)
Q Consensus 101 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~ 180 (605)
+..+.+.+.+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+......-..-+..++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445555667777777778888888777777655443 334455555444433332222211101233344444432
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChH
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
..+..++..+...|++-+|+++.+....-+......++.+..+.+|..
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~ 137 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQ 137 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHH
Confidence 235556666777777777777776654444444445555555554443
No 292
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.75 E-value=8.3 Score=39.07 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHhcCChHHHHHHHhcCCCC-------ChhHHHHHHHHHHHcCChHHHH
Q 037404 326 LLGLGMKVHASINKYRFKCNTNVC-NALVDMYAKCGSLDNAMSVFNGMTKK-------DLVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~ 397 (605)
+.+.+.+++..+.+.- |+...| -.-.+.+...|++++|.+.|+..... ....+--+.-.+....++++|.
T Consensus 248 ~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4455555555555432 222222 22334455556666666666643321 1123333444455566666666
Q ss_pred HHHHHHHHC
Q 037404 398 GLFSRMKDE 406 (605)
Q Consensus 398 ~~~~~m~~~ 406 (605)
..|.++.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 666666654
No 293
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.29 E-value=7.7 Score=34.35 Aligned_cols=200 Identities=13% Similarity=0.114 Sum_probs=110.4
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS 361 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 361 (605)
-..+|...+++++|...+.+..+. ...+...| .. ...++.|..+.+++.+.. --...|+.-..+|..+|.
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~-yEnnrslf-hA------AKayEqaamLake~~kls--Evvdl~eKAs~lY~E~Gs 106 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-HA------AKAYEQAAMLAKELSKLS--EVVDLYEKASELYVECGS 106 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-HH------HHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhCC
Confidence 445666667777777666655431 11111111 11 122344444444444321 123456666777888888
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH---HHHHHHHHHhcccCCHHHHHHHHH
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF--GPDK---YTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~~---~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
++.|-..+++.-+ ...+.++++|+.+|++....=. .-+. ..+...-+.+.+...+++|-..+.
T Consensus 107 pdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 107 PDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred cchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 7777666654321 1234567777777776543200 1111 234445566777777777765554
Q ss_pred HhHHh---hCCCCc-hHHHHHHHHHhhhcCCHHHHHHHHHhC---C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 437 SMERD---YGILPQ-VEHYGCMIDLLGRSGRLKEALRLVQSM---P---VEPNAIIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 437 ~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
+-..- ..--++ -..|...|-.+.-..++..|.+.++.. + ...+..+...|+.+| ..|+.+++..++.
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 43210 111122 234566667777888999999999884 2 123466788888887 5688888777664
No 294
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.23 E-value=6.6 Score=33.47 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH-----HHHHHHhhhcCCHHHH
Q 037404 395 KALGLFSRMKDEGFGPDKYTFV--GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY-----GCMIDLLGRSGRLKEA 467 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A 467 (605)
+......++....-....-++. .+...+...|++++|...++..... |....+ ..|.......|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4455555665542121112222 2345678889999999888877541 222223 2356677889999999
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 468 LRLVQSMPV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 468 ~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+..++...- .-.......-+..+...|+-++|+..|+++++..++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 999998731 123334455568899999999999999999998744
No 295
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.21 E-value=5.5 Score=32.46 Aligned_cols=126 Identities=10% Similarity=0.075 Sum_probs=61.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHh
Q 037404 83 YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSK 162 (605)
Q Consensus 83 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 162 (605)
...++..+...+.+......++.+...+. .+...++.++..+++.+ .......+.. ..+.......++.|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHH
Confidence 34556666656666666666666665542 45555666666665442 2222222221 1233333445555555
Q ss_pred cCCCChHHHHHHHhccCCCCeehHHHHHHHHHhC-CChhHHHHHHhhcCCCCcchHHHHHHHHH
Q 037404 163 CGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKG-GELSEARRLFDEMPERDAVSWNTILDGYA 225 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~~ 225 (605)
.+ -++.+.-++.++.. |...+..+... ++++.|.+.+.+-. +...|..++..+.
T Consensus 82 ~~--l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~~--~~~lw~~~~~~~l 136 (140)
T smart00299 82 AK--LYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQN--NPELWAEVLKALL 136 (140)
T ss_pred cC--cHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhCC--CHHHHHHHHHHHH
Confidence 55 55555555544422 33333444444 55666666655522 3334555554443
No 296
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.12 E-value=0.91 Score=41.45 Aligned_cols=59 Identities=24% Similarity=0.217 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
..++..+...|+++.+...+++....+|-+...|..+..+|.+.|+...|+..|+++.+
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555544
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.89 E-value=0.42 Score=27.10 Aligned_cols=26 Identities=19% Similarity=0.059 Sum_probs=12.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+.++.+.|++++|.+.++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34444444444444444444444443
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.88 E-value=2.8 Score=34.75 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred HHhcCChHHHHHHHhcCCCC-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 356 YAKCGSLDNAMSVFNGMTKK-DL---VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
+...|.+++...-.+-+..+ ++ ..-..|.-+-.+.|++.+|.++|..+......|
T Consensus 142 LvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 34555555555555544421 21 223344455556777777777777766543334
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.83 E-value=1.9 Score=35.51 Aligned_cols=119 Identities=17% Similarity=0.124 Sum_probs=67.6
Q ss_pred HHHHHHHHH---HhcccCCHHHHHHHHHHhHHhhCCCCchHHH-HHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 037404 412 KYTFVGVLC---ACTHAGFIDKGVQYFYSMERDYGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTL 486 (605)
Q Consensus 412 ~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 486 (605)
..+.+.|+. .-...++.+++..++..+.. +.|..... ..-...+...|++.+|..+|+++ ...|....-..|
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHH
Confidence 344444443 44678899999999999865 45543322 23345578999999999999998 334555555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
+..|.....-..=..+..++.+..+ ++.+. .++..+....+...|..
T Consensus 84 lA~CL~~~~D~~Wr~~A~evle~~~-d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 84 LALCLYALGDPSWRRYADEVLESGA-DPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHcCChHHHHHHHHHHhcCC-ChHHH-HHHHHHHHhccccchhh
Confidence 6555544332223333444444333 34333 33344444444444433
No 300
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.53 E-value=0.53 Score=28.50 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 481 IIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.+++.+...|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555555566666666666666655553
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.44 E-value=2.7 Score=40.83 Aligned_cols=89 Identities=9% Similarity=0.009 Sum_probs=50.6
Q ss_pred HhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH
Q 037404 457 LLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
.+...|+++.+.+.+... .+.....+...+++.....|++++|....+.++...-.++++....+..-...|-++++.
T Consensus 332 i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 332 IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344556666666666554 122334455556666666666666666666666655555555544444445556666666
Q ss_pred HHHHHHHhCCC
Q 037404 535 NVRLQMKKTRA 545 (605)
Q Consensus 535 ~~~~~~~~~~~ 545 (605)
..+++......
T Consensus 412 ~~wk~~~~~~~ 422 (831)
T PRK15180 412 HYWKRVLLLNP 422 (831)
T ss_pred HHHHHHhccCC
Confidence 66666655443
No 302
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.34 E-value=7.3 Score=36.49 Aligned_cols=139 Identities=11% Similarity=0.102 Sum_probs=90.8
Q ss_pred HHHHHHhhcCC-ch----HHHHHHHHHHHhCCCCCCcchHHHHHHHhc--c----CChhHHHHHhcccCC-------CCc
Q 037404 19 EKLQNLHKCKN-LN----QTKQLFAQIIKLDLQRDPYIAPKLISSLAL--C----RQMGLAIKVFNDIQD-------PDV 80 (605)
Q Consensus 19 ~~~~~l~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~-------~~~ 80 (605)
.++..|...+. ++ ....+++.|.+.|+..+..++.+..-.... . .....|..+++.|.+ ++=
T Consensus 62 ~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D 141 (297)
T PF13170_consen 62 ILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPED 141 (297)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccc
Confidence 56777777766 54 448999999999999998888764444333 2 235678889998873 333
Q ss_pred ccHHHHHHHHHhCCCc----hHHHHHHHHHHhCCCCCCcc--cHHHHHHHhhccCC--HHHHHHHHHHHHHhCCCCCcch
Q 037404 81 HLYNTLIRACVQNSLN----AQAFRVFLDMQEKGVFTDNF--TYPFLLKACNGKNW--FHLVQMIHALIYKCGYFGDIFV 152 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~----~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~ 152 (605)
.++.+|+.. ..+++ +.+..+|+.+.+.|+..... ....++..+..... ...+..+++.+.+.|++.....
T Consensus 142 ~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~ 219 (297)
T PF13170_consen 142 YPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMH 219 (297)
T ss_pred hhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccccc
Confidence 455556543 33333 55678888888888775443 34444444332222 3467888888999998877777
Q ss_pred hhHHHHH
Q 037404 153 PNSLIDS 159 (605)
Q Consensus 153 ~~~l~~~ 159 (605)
|..+.-.
T Consensus 220 yp~lGlL 226 (297)
T PF13170_consen 220 YPTLGLL 226 (297)
T ss_pred ccHHHHH
Confidence 6655433
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.30 E-value=2.9 Score=35.60 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=68.6
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCc-----hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQ-----VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHN 494 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 494 (605)
+...|++++|..-|..++. -+++. ...|..-..++.+.+.++.|++-..+. .+.|+ ...+..-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4567777777777777766 23332 234555566778888888888877766 44554 234444466788888
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
++++|+.-|+++++.+|....+-...+++
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999998876555554444
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.26 E-value=17 Score=36.12 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=103.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
.-+++..+..+.++.-...+..+|+..| -+...+..++.+|... ..+.-..++.++.+..+. +...-..|+..|-+
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk 144 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKYEK 144 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHHHH
Confidence 4456667777777777777888887753 5667777777777776 556667777777766543 34444555555555
Q ss_pred cCChHHHHHHHhcCCCC------Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCCH
Q 037404 359 CGSLDNAMSVFNGMTKK------DL---VSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAGFI 428 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~ 428 (605)
++.+.+..+|.++... +. ..|..+...- ..+.+..+.+..++... |..--...+.-+-.-|....++
T Consensus 145 -ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 145 -IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred -hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 7777777777655411 11 2444443311 24556666666666542 3333344455555667778888
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
++|++++..+.+ ....|......++.-+
T Consensus 222 ~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 222 TEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 888888887776 3444555555555543
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=91.09 E-value=0.015 Score=47.94 Aligned_cols=83 Identities=17% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHH
Q 037404 317 ILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 317 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555666666667777776655555677777777777777766777666663222 2223445555555555555
Q ss_pred HHHHHH
Q 037404 397 LGLFSR 402 (605)
Q Consensus 397 ~~~~~~ 402 (605)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 555544
No 306
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.08 E-value=19 Score=36.49 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=93.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037404 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320 (605)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 320 (605)
+..+|...+..-.+.|+.+.+.-+|++..-+ -..-|--.+.-....|+.+-|..++....+--++-...+-..-...
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3467777777788888888888888876532 1122444444445557777777777666554333233332222333
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH---HHHhcCC--CCChhHHHHHHH-----HHHHc
Q 037404 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM---SVFNGMT--KKDLVSWNAMLY-----GLAMH 390 (605)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~--~~~~~~~~~l~~-----~~~~~ 390 (605)
+-..|+.+.|..+++.+...- +.-..+-..-+....+.|+.+.+. .++.... ..+......+.- .+.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445678888888888776654 222233333445556666666665 3333222 112222222211 12234
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
++.+.|..++.++.+. ++++...|..++..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 5666666666666653 23344444444443
No 307
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.05 E-value=0.79 Score=41.74 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=81.6
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCC-------CCcccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037404 37 FAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQD-------PDVHLYNTLIRACVQNSLNAQAFRVFLDMQEK 109 (605)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 109 (605)
.+.-...|.+.+..+...++..-....+++++..++-.++. ++...+ +.++.+. .-++++++.++..=.+.
T Consensus 52 ~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqY 129 (418)
T KOG4570|consen 52 MDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQY 129 (418)
T ss_pred chhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchh
Confidence 34455567788888888888887778889999998877762 333333 2344333 34688999999999999
Q ss_pred CCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhC
Q 037404 110 GVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCG 145 (605)
Q Consensus 110 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 145 (605)
|+.||.++++.+|..+.+.++...|..+...|....
T Consensus 130 GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 130 GIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred ccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877776543
No 308
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=90.96 E-value=0.34 Score=25.89 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
.....++.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345677778888888888877765
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.77 E-value=0.8 Score=42.18 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=62.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (605)
..-|.+.|.+++|+..|.+-.. +.| |.+++..-..+|.+...+..|..-...++.- ...-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999998776 456 8888888888999999988887766666541 1111223333334444445
Q ss_pred CHHHHHHHHHhC-CCCCCH
Q 037404 463 RLKEALRLVQSM-PVEPNA 480 (605)
Q Consensus 463 ~~~~A~~~~~~~-~~~p~~ 480 (605)
+..+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 566666555554 456663
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.51 E-value=25 Score=36.89 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=87.7
Q ss_pred HHHHHhCCChhHHHHHHhhcCC--C---CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 037404 190 IAGLVKGGELSEARRLFDEMPE--R---DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264 (605)
Q Consensus 190 i~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 264 (605)
|+.+.+.+.+++|+++-+.... | -.......+..+...|+++.|-...-.|...+..-|...+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 4556677778888877776622 1 1123445667777777888777777777777777777766666666665444
Q ss_pred HHHHhhCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC
Q 037404 265 KLLFDRMPA-KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFK 343 (605)
Q Consensus 265 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (605)
..++-.-.. -++..|..++..+.. .+.. -|.+.++. -+++...-..++.+ .. .++.+. .
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa--~~----------~q~~q~--S 502 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISA--TE----------PQIKQN--S 502 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhh--cc----------hHHHhh--c
Confidence 333322211 123336666666655 2222 22222221 12221111111111 00 011111 1
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh
Q 037404 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDL 377 (605)
Q Consensus 344 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 377 (605)
-+......|+..|...++++.|..++-.+..+++
T Consensus 503 e~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 503 ESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred cchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 1223344477888888888888888877765543
No 311
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=0.88 Score=39.77 Aligned_cols=77 Identities=12% Similarity=0.068 Sum_probs=36.3
Q ss_pred HHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 464 LKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
++.|...|.+. .+.|+.. .|..-+.++.+..+++.+..-..+++++.|+.....+.++..+.....+++|+..+++.
T Consensus 26 y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 26 YDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444433333 3334432 22333344444455555555555555555555555555555555555555555555554
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.27 E-value=0.36 Score=27.36 Aligned_cols=29 Identities=14% Similarity=0.210 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++..++.++.+.|++++|.+.++++++.-
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 56789999999999999999999998853
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.25 E-value=0.62 Score=26.66 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999874
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.24 E-value=16 Score=34.12 Aligned_cols=159 Identities=11% Similarity=0.019 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGE---KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
+...++.+|...+..+ +|..+++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|+.. +......+...+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~--~~~~e~~~~~~l 162 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS--VDHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh--cccccchHHHHH
Confidence 4445555565555433 3444555554432 112333434455555567777777777777763 221222333333
Q ss_pred HHh---hhcCCHHHHHHHHHhC---CCCCCHH-HHHH-HH---HHHHhcCC------HHHHHHHHHHHHhh--cCCCCch
Q 037404 456 DLL---GRSGRLKEALRLVQSM---PVEPNAI-IWGT-LL---GACRKHNA------VELAEEVLDCLIRL--KGSDPGN 516 (605)
Q Consensus 456 ~~~---~~~g~~~~A~~~~~~~---~~~p~~~-~~~~-l~---~~~~~~g~------~~~A~~~~~~~~~~--~p~~~~~ 516 (605)
..+ .... ...|...++.+ ...|... .... ++ ....+.++ .+....+++.+.+. .|-++.+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 322 3222 23444444443 2222221 1111 11 11112111 44444445533332 2333332
Q ss_pred -------HHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 517 -------YTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 517 -------~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+-.-+....+.++|++|.+.++-..
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 2233555788999999999998654
No 315
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=13 Score=32.71 Aligned_cols=19 Identities=16% Similarity=0.066 Sum_probs=11.9
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 037404 494 NAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~ 512 (605)
.+.-.+...+++..+.+|.
T Consensus 209 ~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPA 227 (288)
T ss_pred ccHHHHHHHHHHHHhcCCc
Confidence 4555566666666666665
No 316
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.55 E-value=0.7 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++..|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 36789999999999999999999999874
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.52 E-value=4.1 Score=37.33 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHHHHHHHH
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEHYGCMID 456 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~ 456 (605)
..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.. +.|+.|...+...+..
T Consensus 157 ~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~ 235 (280)
T COG3629 157 TKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEE 235 (280)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHH
Confidence 334444444455555555555544432 22444455555555555555555544444432 2355555544444333
No 318
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.32 E-value=10 Score=31.83 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=67.2
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcc
Q 037404 136 MIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV 215 (605)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 215 (605)
++.+-+.+.++.|+...+..+++.+.+.| .+.....+++--.-+|.......+-.+.. ....+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~--~~~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~------------- 77 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNG--QFSQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPA------------- 77 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHhhcccCCcHHHHHHHHHhHc--cChHH-------------
Confidence 34444555667777777777777777777 66666555554333333322222211111 11111
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 037404 216 SWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 216 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (605)
..-|..++.++. ..+..+++.+...|++-+|.++.......+..+...++.+-.+.+|...-
T Consensus 78 --------------~Ql~lDMLkRL~----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf 139 (167)
T PF07035_consen 78 --------------YQLGLDMLKRLG----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLF 139 (167)
T ss_pred --------------HHHHHHHHHHhh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHH
Confidence 111222222221 12334455556666666666666665444444455566666666666655
Q ss_pred HHHHHHHHHc
Q 037404 296 ARLYDQMEEA 305 (605)
Q Consensus 296 ~~~~~~m~~~ 305 (605)
..+|+-..+.
T Consensus 140 ~~V~~ff~~~ 149 (167)
T PF07035_consen 140 YAVFRFFEER 149 (167)
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 319
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.31 E-value=25 Score=35.02 Aligned_cols=176 Identities=10% Similarity=0.076 Sum_probs=105.6
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 344 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
.|.....+++..+.+..++.-.+.+..+|. ..+-..|..++.+|..+ ..++-..+|+++.+.. -|...+..-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHH
Confidence 344555667777777777777777776665 34556777777788777 5566777888777753 344444443334
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCc------hHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQ------VEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGTLLGACR 491 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 491 (605)
+...++...+..+|.++.. .+.|. ...|..+... -..+.+.-+.+..+. +..--...+.-+..-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 4444777777777777766 33331 2234444332 134555555555554 22222333444445566
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
...++++|++++..+++.+..+..+-..++..+..
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 67788888888888888777666665566555544
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.23 E-value=4.2 Score=34.72 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc------HHHHHHHHHhCCChHHHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP------WTIIISGYAEKGMAKEAARLYDQME 303 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~a~~~~~~m~ 303 (605)
.+..+...|.+.|+.+.|.+.|.++.+....+ +-.+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555555555555555555544332222 3444445555555555555544443
No 321
>PRK09687 putative lyase; Provisional
Probab=89.23 E-value=19 Score=33.57 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=6.8
Q ss_pred CCeehHHHHHHHHHhCC
Q 037404 181 RDIVSWNSMIAGLVKGG 197 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g 197 (605)
+|.......+..+...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 33333333444444444
No 322
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.20 E-value=2.9 Score=30.80 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-++.+-++.+....+-|++......+++|.+.+++..|+.+++.++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44466777777778888999999999999999999999999999988764333 4446666553
No 323
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.04 E-value=1.8 Score=28.03 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
-.+.-++.+.|++++|.+..+.+++.+|++..+...
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 346678899999999999999999999998765443
No 324
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.04 E-value=3.1 Score=31.01 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
-+..+-++.+....+-|++......+++|.+.+++..|+.+++.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566677777777889999999999999999999999999999998854433 336766654
No 325
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.85 E-value=1.1 Score=37.40 Aligned_cols=13 Identities=0% Similarity=-0.143 Sum_probs=6.4
Q ss_pred HHHHHHHHHHhHH
Q 037404 428 IDKGVQYFYSMER 440 (605)
Q Consensus 428 ~~~a~~~~~~~~~ 440 (605)
++.|.+.++....
T Consensus 7 FE~ark~aea~y~ 19 (186)
T PF06552_consen 7 FEHARKKAEAAYA 19 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555433
No 326
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.44 E-value=37 Score=35.93 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 037404 80 VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129 (605)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 129 (605)
...| ++|--+.+.|++++|.++....... .......|...+..+....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCC
Confidence 3345 5788889999999999999666543 5556677888888886653
No 327
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=17 Score=32.07 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=49.5
Q ss_pred HHHHhhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhhcCCCCch-------H
Q 037404 454 MIDLLGRS-GRLKEALRLVQSM-----PVEPNAIIWGTLL---GACRKHNAVELAEEVLDCLIRLKGSDPGN-------Y 517 (605)
Q Consensus 454 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~ 517 (605)
+...|-.- .++++|+..|+.. +.+.+...-..++ .--...+++.+|+.+|++..+..-+++-. +
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 33444333 4566666666655 1122222222333 33356789999999999998865555432 2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..-+.++.-.++.-.+...+++..+..
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 222333334455555666676666643
No 328
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.82 E-value=38 Score=35.34 Aligned_cols=148 Identities=14% Similarity=0.071 Sum_probs=74.6
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH---hhh----cCC
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL---LGR----SGR 463 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~----~g~ 463 (605)
.+...|..++++.-+.| .|...--...+..+.. +.++.+.-.+..+.+ .+..-....-..+... ... ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccc
Confidence 35566666666666665 3332222222223333 555555544444443 2322211111111111 111 124
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-C--ChHHHHHH
Q 037404 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKH----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-G--DWNKVANV 536 (605)
Q Consensus 464 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~A~~~ 536 (605)
.+.+..++.+....-+......+...|..- .+++.|...+..+.... +.....++.++... | .+..|..+
T Consensus 455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 555666666653334444445555444322 36788888888777755 66777788777544 2 25778888
Q ss_pred HHHHHhCC
Q 037404 537 RLQMKKTR 544 (605)
Q Consensus 537 ~~~~~~~~ 544 (605)
+++..+.+
T Consensus 532 ~~~~~~~~ 539 (552)
T KOG1550|consen 532 YDQASEED 539 (552)
T ss_pred HHHHHhcC
Confidence 88777643
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=87.69 E-value=9 Score=28.51 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.0
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (605)
..+...|++++|..+.+.+..+++.+|.+|... +.|-.+++..-+..|...| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345667788888888877777777777666543 4566666666666676665 4444444
No 330
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.59 E-value=0.67 Score=26.74 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=11.7
Q ss_pred chHHHHHHHHHhhhcCCHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
+...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4455555555555555555543
No 331
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=87.52 E-value=0.97 Score=43.90 Aligned_cols=87 Identities=18% Similarity=0.069 Sum_probs=58.5
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEPNAIIWGT-LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
..+.+.++++.|..++.++ ...||-..|.+ -..++.+.+++..|+.-+.++++.+|.....|..-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 3445566677777777666 55565443332 336667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHh
Q 037404 534 ANVRLQMKK 542 (605)
Q Consensus 534 ~~~~~~~~~ 542 (605)
...|+....
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 777766554
No 332
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.48 E-value=0.68 Score=38.05 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=43.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChh
Q 037404 121 LLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 121 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 200 (605)
+++.+.+.+.+.....+++.+...+...+....+.|+..|++.+ +.+...++++.... .-...++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~--~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD--PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT--TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC--CchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 34444555555555556666665554445556666666666665 55555555553222 22334445555555555
Q ss_pred HHHHHHhhc
Q 037404 201 EARRLFDEM 209 (605)
Q Consensus 201 ~A~~~~~~~ 209 (605)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 555554444
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.36 E-value=15 Score=37.11 Aligned_cols=151 Identities=16% Similarity=0.107 Sum_probs=100.2
Q ss_pred HHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHH
Q 037404 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~ 434 (605)
..-.|+++.|..++-.+.++ .-+.++..+.+.|-.++|+++ .+|+. -|. ...+.|+++.|.++
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~l 659 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDL 659 (794)
T ss_pred HhhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHH
Confidence 34557778777766665532 334556666677777766653 33332 122 23567888888887
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+-+.-..+-..+.+....|
T Consensus 660 a~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N- 725 (794)
T KOG0276|consen 660 AVEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN- 725 (794)
T ss_pred HHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc-
Confidence 7665 345668999999999999999999998863 24456666667777766555555555543333
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
.--.+|...|+++++.+++.+-
T Consensus 726 ----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ----hHHHHHHHcCCHHHHHHHHHhc
Confidence 3334678899999999988654
No 334
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.35 E-value=4.6 Score=32.75 Aligned_cols=47 Identities=15% Similarity=0.200 Sum_probs=30.6
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQ---VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
...++.+++..++..+.- +.|+ ..++. ...+...|++++|..+|++.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFD--GWLLIARGNYDEAARILREL 70 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhH--HHHHHHcCCHHHHHHHHHhh
Confidence 346777788888877754 3443 33333 33456778888888888877
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.92 E-value=1.3 Score=27.27 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=23.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..|+.+|...|+.+.|+++++++...+
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999998643
No 336
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.80 E-value=2.9 Score=36.19 Aligned_cols=64 Identities=20% Similarity=0.086 Sum_probs=45.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.+..+..+.+.+.+++|+...+.- +-+|. ...-..+++.++-.|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 344566777888888888877654 43444 44556677888888888888888888888877653
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.71 E-value=6.7 Score=29.34 Aligned_cols=51 Identities=24% Similarity=0.344 Sum_probs=35.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 471 VQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 471 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+-.+..-|++.+..+.+++|.+.+++..|+++++-+...-.+....|..++
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 334456799999999999999999999999999988876655554666654
No 338
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.70 E-value=18 Score=30.34 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=72.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH-HHH--HHHHHhhhcC
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE-HYG--CMIDLLGRSG 462 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~g 462 (605)
+++.+..++|+.-|..+.+.|...=+. ............|+...|...|.++-.+. -.|... -.. .-...+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt-~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT-SIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC-CCcchhhHHHHHHHHHHHhccc
Confidence 356677788888888888766432111 12222334567788888888888876642 222211 111 1223455677
Q ss_pred CHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 463 RLKEALRLVQSMPV--EPN-AIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 463 ~~~~A~~~~~~~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
.++......+.+.. .|- ...-..|.-+-.+.|++..|...|..+..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 78887777777621 222 22345666667788888888888887776
No 339
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.68 E-value=2.6 Score=38.14 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+++.....|...|.+.+|.++.++++..+|-+...+..+...|...|+--+|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3445567788999999999999999999999999999999999999999999999888865
No 340
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.63 E-value=28 Score=32.66 Aligned_cols=137 Identities=16% Similarity=0.271 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--cC----chHHHHHHHHHHHHcCCC---CChhHHHHHHHHHHhcCCh
Q 037404 292 AKEAARLYDQMEEAGLKPDDGTLISILAACAE--SG----LLGLGMKVHASINKYRFK---CNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 292 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 362 (605)
+++.+.+++.|.+.|+.-+..++.+....... .. ....+..+|+.|++..+- ++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566788888888888877776654433333 22 234566677777665421 122222222211 22222
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcccCC--HHHHHHHHHHh
Q 037404 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK--YTFVGVLCACTHAGF--IDKGVQYFYSM 438 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~ 438 (605)
+.- .+.+..+|+.+.+.|+..+. .....++..+..... ..++.++++.+
T Consensus 156 e~l---------------------------~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l 208 (297)
T PF13170_consen 156 EEL---------------------------AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL 208 (297)
T ss_pred HHH---------------------------HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 111 24556666777776665533 233334433333222 33666777777
Q ss_pred HHhhCCCCchHHHHHHHHHh
Q 037404 439 ERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~ 458 (605)
.+ .++++....|..++-.-
T Consensus 209 ~~-~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 209 KK-NGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HH-cCCccccccccHHHHHH
Confidence 76 47777666666554443
No 341
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.45 E-value=5.9 Score=35.05 Aligned_cols=64 Identities=9% Similarity=0.017 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHH-------HHHHHHHHHHhhc--CCC----CchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 481 IIWGTLLGACRKHNAVE-------LAEEVLDCLIRLK--GSD----PGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~--p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+..+.+.|...|+.+ .|.+.|+++.+.. |.. ..+.+.+|.+..+.|++++|.+.+.++...+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555667777777744 4445555555432 222 3567789999999999999999999999854
No 342
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.13 E-value=1.8 Score=23.64 Aligned_cols=28 Identities=21% Similarity=0.042 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
..+...+...|+++.|...++++++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3344444445555555555555544443
No 343
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.03 E-value=51 Score=35.03 Aligned_cols=378 Identities=11% Similarity=-0.008 Sum_probs=179.0
Q ss_pred cchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccC
Q 037404 50 YIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKN 129 (605)
Q Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 129 (605)
..-...+..+++.+++....+ |..-++.+...-.....+....|+.++|......+-..|.. .+.....++..+.+.|
T Consensus 100 ~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 100 SLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcC
Confidence 333444556666777777777 33223344444455667777778777777766666555433 3455666666665444
Q ss_pred CHHHHH--HHHHHHHHhCC-----------CCCcc-hhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHH--H
Q 037404 130 WFHLVQ--MIHALIYKCGY-----------FGDIF-VPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAG--L 193 (605)
Q Consensus 130 ~~~~a~--~~~~~~~~~~~-----------~~~~~-~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~--~ 193 (605)
.+.... +=+..+...|- .++.. ....++..+ . +...+..++.... ++...-..++.+ -
T Consensus 178 ~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~---~--~p~~~~~~~~~~~-~~~~~~~~~~~~l~R 251 (644)
T PRK11619 178 KQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQ---N--DPNTVETFARTTG-PTDFTRQMAAVAFAS 251 (644)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHH---H--CHHHHHHHhhccC-CChhhHHHHHHHHHH
Confidence 322211 11111111110 11111 111111111 1 2333333333321 111111111111 1
Q ss_pred HhCCChhHHHHHHhhcCCCC-------cchHHHHHHHHHcCCChHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCCHHHH
Q 037404 194 VKGGELSEARRLFDEMPERD-------AVSWNTILDGYAKAGEMNLAFELFEKIPHR--NIVSWSTMVWGYSKDGDMEMA 264 (605)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a 264 (605)
....+.+.|..++....... ......+.......+..+.+...++..... +......-+......++++.+
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHH
Confidence 23455688888887762222 122333433333333356777777765432 455555556666788999999
Q ss_pred HHHHhhCCCCCcc--c-HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHH-HHHHHHHHHc
Q 037404 265 KLLFDRMPAKTLV--P-WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLG-MKVHASINKY 340 (605)
Q Consensus 265 ~~~~~~~~~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 340 (605)
...+..|...... - .--+.+++...|+.++|...|+.+.. ..+ -|..+... +.|..-.. ...... ...
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa~--~Lg~~~~~~~~~~~~-~~~ 403 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAAQ--RLGEEYPLKIDKAPK-PDS 403 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHHH--HcCCCCCCCCCCCCc-hhh
Confidence 8888888642211 1 34566777778999999999988743 122 12222111 11211000 000000 000
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-----CCCCCHHH
Q 037404 341 RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-----GFGPDKYT 414 (605)
Q Consensus 341 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~~p~~~~ 414 (605)
.+...+ ...-+..+...|+...|...+..+. ..+......+.......|.++.++......... .+ |. .
T Consensus 404 ~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~--~ 478 (644)
T PRK11619 404 ALTQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PL--A 478 (644)
T ss_pred hhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-Cc--c
Confidence 000001 1223445566777777777776544 234444455555555667777776655432211 11 11 2
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchH
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
|...+..+.....++.+. ++.-+.++.++.|+..
T Consensus 479 ~~~~~~~~a~~~~v~~~l-v~ai~rqES~f~p~a~ 512 (644)
T PRK11619 479 WNDEFRRYTSGKGIPQSY-AMAIARQESAWNPKAR 512 (644)
T ss_pred hHHHHHHHHHHcCCCHHH-HHHHHHHhcCCCCCCc
Confidence 444555555444444443 2233333346666544
No 344
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.99 E-value=6.4 Score=29.09 Aligned_cols=49 Identities=22% Similarity=0.375 Sum_probs=35.3
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 473 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
.+..-|++.+..+.+++|.+.+++..|+++++-....-..+...|..+.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 3456788888888888998889999999888877755443444454443
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.87 E-value=51 Score=34.93 Aligned_cols=49 Identities=18% Similarity=0.091 Sum_probs=37.4
Q ss_pred HhcCCHHHHHHHHHHHHhhc---CC------CCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLK---GS------DPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~---p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+-.|++..|....+.+.+.. |. .+..++..|-.+...|+.+.|...|.+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~ 429 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQK 429 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 35689999999999888753 22 245566677777788999999999983
No 346
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=9.1 Score=33.91 Aligned_cols=61 Identities=10% Similarity=-0.077 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+..+.+++...|++-++++...++++..|.+..+|+.-+.+....=+.++|..-+..+.+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3444566677899999999999999999999999999999999888999999999988874
No 347
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=85.53 E-value=24 Score=30.80 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=86.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh-HHHHHHH--HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLV-SWNAMLY--GLAMHGQGEKALGLFSRMKDEGFGPDKY--TFVGVL 419 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll 419 (605)
-+.+||.|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++.--|++.-|.+-+.+.-+.. +.|+. .|..+.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3567888888888888899888888877765542 2222222 2334578888888777776653 22222 222222
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh-cCCHHHHHHHHHhCCCC------CCHHHHHHHHHHHHh
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR-SGRLKEALRLVQSMPVE------PNAIIWGTLLGACRK 492 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~------p~~~~~~~l~~~~~~ 492 (605)
...-++.+|..-+.+--+ + .+..-|...+..|.- .=..+.+.+-...-... .-..||--+.+-+..
T Consensus 177 ---E~k~dP~~A~tnL~qR~~--~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~ 249 (297)
T COG4785 177 ---EQKLDPKQAKTNLKQRAE--K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGKYYLS 249 (297)
T ss_pred ---HhhCCHHHHHHHHHHHHH--h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence 233355566544433222 2 333344433332221 11122222222221100 113456667778888
Q ss_pred cCCHHHHHHHHHHHHhhc
Q 037404 493 HNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~ 510 (605)
.|+.++|..+|+-++..+
T Consensus 250 ~G~~~~A~~LfKLaiann 267 (297)
T COG4785 250 LGDLDEATALFKLAVANN 267 (297)
T ss_pred cccHHHHHHHHHHHHHHh
Confidence 999999999999888754
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.31 E-value=3.3 Score=30.62 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 501 EVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.-+++.++.+|+|......++..+...|++++|.+.+-.+.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455556667777777777777777777777777777777764
No 349
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.25 E-value=28 Score=31.38 Aligned_cols=242 Identities=17% Similarity=0.206 Sum_probs=133.9
Q ss_pred cCCHHHHHHHHhhCCCC-------CcccHHHHHHHHHhCCChHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHccC
Q 037404 258 DGDMEMAKLLFDRMPAK-------TLVPWTIIISGYAEKGMAKEAARLYDQMEEA---GL--KPDDGTLISILAACAESG 325 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~ 325 (605)
..++++|+.-|+++.+- +......++....+.+++++.++.|++++.. .+ .-+....+.++.......
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 34566666666665432 1222445677777888888888888777531 11 123455666766666666
Q ss_pred chHHHHHHHHHHHH----c-CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------C-------hhHHHHHHH
Q 037404 326 LLGLGMKVHASINK----Y-RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKK--------D-------LVSWNAMLY 385 (605)
Q Consensus 326 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-------~~~~~~l~~ 385 (605)
+.+....+|+.-.+ . +-..--.+-..|...|...|++....++++++... | ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66665555544321 1 11111123345777788888888888887766411 1 246666777
Q ss_pred HHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh-----cccCCHHHHHHHHHHhHHhhCCC--Cc---hHHHHHH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEG-FGPDKYTFVGVLCAC-----THAGFIDKGVQYFYSMERDYGIL--PQ---VEHYGCM 454 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~~~~~~--~~---~~~~~~l 454 (605)
.|....+-.+-..++++..... --|.+... .+++-| .+.|.+++|..-|-++.+.+.-. |. ---|..|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8877777777777777755421 23444443 344444 45678888776555554422211 22 2234556
Q ss_pred HHHhhhcCCHHHHHHHHH--hC-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 455 IDLLGRSGRLKEALRLVQ--SM-PV--EPNAIIWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~--~~-~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
..++.+.|- .-|+ ++ +. .|.......++.+|. .++..+-++++..-
T Consensus 279 ANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 279 ANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSN 329 (440)
T ss_pred HHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhh
Confidence 666666551 0111 11 22 344556677777775 45666655555443
No 350
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=84.74 E-value=30 Score=31.20 Aligned_cols=189 Identities=10% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGL--KPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC 359 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 359 (605)
-+..-.+.|++++|.+.|+.+...-. +-...+...++-++.+.++++.|....++..+........-|...+.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs-- 117 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS-- 117 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH--
Confidence 34455677888888888888875421 11234444555666677777777777777665443323333444444443
Q ss_pred CChHHHHHHHhcCCCCChhHHHHHHHHHHHcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQG---EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
.|..+..+ .++. ..|..-|++++.. -||.. -...|..-+.
T Consensus 118 --------~~~~i~~~--------------~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~ 160 (254)
T COG4105 118 --------YFFQIDDV--------------TRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIV 160 (254)
T ss_pred --------HhccCCcc--------------ccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHH
Confidence 11111111 1122 2333444444442 23221 1111111111
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.+... =...=..+...|.+.|.+..|..-++++ +..+ ....+-.+..+|...|-.++|...-+-+....|
T Consensus 161 ~~~d~-----LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 161 KLNDA-----LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHH-----HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 11110 0001123556677777777777777766 1111 123455566778888888888777666555556
Q ss_pred CCC
Q 037404 512 SDP 514 (605)
Q Consensus 512 ~~~ 514 (605)
+++
T Consensus 236 ~s~ 238 (254)
T COG4105 236 DSQ 238 (254)
T ss_pred CCc
Confidence 655
No 351
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.67 E-value=14 Score=37.32 Aligned_cols=151 Identities=17% Similarity=0.108 Sum_probs=92.0
Q ss_pred HHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 037404 193 LVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP 272 (605)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 272 (605)
..-.|+++.|..++..+.++. -+.++..+.+.|-.++|+++- ..++.. .....+.|+++.|.++..+.
T Consensus 596 ~vmrrd~~~a~~vLp~I~k~~---rt~va~Fle~~g~~e~AL~~s---~D~d~r-----Felal~lgrl~iA~~la~e~- 663 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIPKEI---RTKVAHFLESQGMKEQALELS---TDPDQR-----FELALKLGRLDIAFDLAVEA- 663 (794)
T ss_pred HhhhccccccccccccCchhh---hhhHHhHhhhccchHhhhhcC---CChhhh-----hhhhhhcCcHHHHHHHHHhh-
Confidence 344577777777666665332 245556666677777776552 112211 22345678888887776653
Q ss_pred CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 273 AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 273 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
.+..-|..|..+....+++..|.+.|..... +..++..+...|+-+....+-....+.|. .|..
T Consensus 664 -~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~A 727 (794)
T KOG0276|consen 664 -NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLA 727 (794)
T ss_pred -cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchH
Confidence 3445588888888888888888888876654 34566666667776655555555555442 1223
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 037404 353 VDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~ 371 (605)
..+|...|+++++.+++.+
T Consensus 728 F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3345566777777666654
No 352
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=84.55 E-value=3 Score=34.98 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
+++|...|+++...+|.+......| .+. +.|-+++.++.+++.
T Consensus 96 F~kA~~~FqkAv~~~P~ne~Y~ksL-e~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNELYRKSL-EMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHH-HHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHH-HHH------HhhHHHHHHHHHHHh
Confidence 7788888888899999976433333 332 347788888877654
No 353
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.46 E-value=0.68 Score=42.79 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=49.1
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHH
Q 037404 460 RSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
..|.+++|++.|... ...|. ...+..-..++.+.++...|++-+..+.+++|+...-|-.-+.+..-.|+|++|...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 445566666665554 22222 3334444455556666666666666666666666666666666666666666666666
Q ss_pred HHHHhCCCC
Q 037404 538 LQMKKTRAQ 546 (605)
Q Consensus 538 ~~~~~~~~~ 546 (605)
....+.+..
T Consensus 206 ~~a~kld~d 214 (377)
T KOG1308|consen 206 ALACKLDYD 214 (377)
T ss_pred HHHHhcccc
Confidence 666555443
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=83.04 E-value=37 Score=30.99 Aligned_cols=161 Identities=12% Similarity=0.084 Sum_probs=94.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHhcccCCHHHHHHHHHHh---HHhhCCCCchHHHH
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKY-------TFVGVLCACTHAGFIDKGVQYFYSM---ERDYGILPQVEHYG 452 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~~~ 452 (605)
+.+-..+.+++++|+..+.++...|+..+.. +...+...|...|+...-.+..... ..++.-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 3445567788899999999998888766654 4455677788888776554444332 22223333445556
Q ss_pred HHHHHhhhc-CCHHHHHHHHHhC---CCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHh----hc--CCCCchH
Q 037404 453 CMIDLLGRS-GRLKEALRLVQSM---PVEPNAI-----IWGTLLGACRKHNAVELAEEVLDCLIR----LK--GSDPGNY 517 (605)
Q Consensus 453 ~l~~~~~~~-g~~~~A~~~~~~~---~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--p~~~~~~ 517 (605)
+|++.+-.. ..++.-+++.... ..+-... .-.-++..+.+.|.+.+|+.....+.. .+ |.-...+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 666665433 3344444444333 1111111 112356667788888888776544433 22 4444556
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..=..+|....+...+..-+..+...
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~ 194 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTL 194 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHH
Confidence 66667777777777777777766664
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.01 E-value=2.4 Score=23.06 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999998864
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=81.70 E-value=3.6 Score=22.89 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
|+.+.|..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999889888888777654
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.96 E-value=43 Score=30.30 Aligned_cols=182 Identities=12% Similarity=0.053 Sum_probs=107.7
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCchHHHHHHHHHHHH---cCC--CCChhHHHHHHHHHHhc
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDG---TLISILAACAESGLLGLGMKVHASINK---YRF--KCNTNVCNALVDMYAKC 359 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l~~~~~~~ 359 (605)
+..++++|+.-|.+.++....-... .+..++....+.+++++....|.++.. +.+ ..+....|.+++.....
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 4458899999999988753232333 345667888899999888888877642 222 12345567777766666
Q ss_pred CChHHHHHHHhcCC-----CCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC----C-------HHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT-----KKDLV----SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP----D-------KYTFVGVL 419 (605)
Q Consensus 360 g~~~~A~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p----~-------~~~~~~ll 419 (605)
.+.+--.++++.-. .+|.. +-..+...|...+.+.+-.++++++...--.- | ...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 66666555554322 11222 33456667777777777777777776542111 1 12355556
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH----HHhhhcCCHHHHHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI----DLLGRSGRLKEALR 469 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~ 469 (605)
+.|....+-..-..+++....-..-.|.+.....+- .+..+.|.+++|..
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 666666666666666766654334445554443332 23445666666654
No 358
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=80.78 E-value=1e+02 Score=34.57 Aligned_cols=256 Identities=11% Similarity=-0.010 Sum_probs=145.8
Q ss_pred HHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCCh-HHHHHHHHhCCCCChhHH
Q 037404 170 LAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEM-NLAFELFEKIPHRNIVSW 248 (605)
Q Consensus 170 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~ 248 (605)
....+.+.+..+|.......+..+.+.+..+....+...+..+|...-...+.++...+.. .....+...+..+|..+-
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR 701 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVR 701 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHH
Confidence 3345555666778888888888888877654333344444555554444444555443221 112223333445676666
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 328 (605)
...+.++...+.-+ ...+...+..++...-...+.++...+..+. +..... .++...-.....++...+..+
T Consensus 702 ~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 702 AAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 66666666543211 2334455556665554555556655544332 222222 456666566666666666543
Q ss_pred H-HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH-HHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037404 329 L-GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAM-SVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406 (605)
Q Consensus 329 ~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 406 (605)
. +...+..+.+ .++..+-...+.++...|..+.+. .+...+..++...-...+.++...+. .++...+..+.+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~- 848 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT- 848 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-
Confidence 2 2333444433 346777888888888888766553 34445556676666667777777765 456666666664
Q ss_pred CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 407 GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 407 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.|+...-...+.++.+......+...+..+..
T Consensus 849 --D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 849 --DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred --CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 56666666666777665444567777776665
No 359
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.43 E-value=17 Score=31.34 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=52.3
Q ss_pred hcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----CCCCchHHHHHHHHHhcCChHH
Q 037404 460 RSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK----GSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.|+ +.|.+.|-.+ +.-.++.....|+..| ...+.++++.++-+++++. ..||.++..|+.++.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4444 5677777666 2223444444444444 5678999999999999974 3368899999999999999998
Q ss_pred HH
Q 037404 533 VA 534 (605)
Q Consensus 533 A~ 534 (605)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.31 E-value=54 Score=34.20 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=23.4
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHhCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT-GDWNKVANVRLQMKKTR 544 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 544 (605)
+...|..+++++.+.. ++.+...++..+.-. |+++.+.-.+..+.+.+
T Consensus 379 ~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELG 427 (552)
T ss_pred CHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhh
Confidence 5556666666666554 222333333332222 55555555555555544
No 361
>PRK12798 chemotaxis protein; Reviewed
Probab=80.29 E-value=61 Score=31.66 Aligned_cols=150 Identities=19% Similarity=0.210 Sum_probs=100.0
Q ss_pred cCChHHHHHHHhcCCCC----ChhHHHHHHHH-HHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcccCCHH
Q 037404 359 CGSLDNAMSVFNGMTKK----DLVSWNAMLYG-LAMHGQGEKALGLFSRMKDEGFGPDK----YTFVGVLCACTHAGFID 429 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~ 429 (605)
.|+.+++.+.+..+... ....|-.|+.+ .....+..+|+++|+..+-. -|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58889999999887733 44566666665 44567889999999987753 4433 23444455677889999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHH-HHHHhhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGC-MIDLLGRS---GRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDC 505 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (605)
++..+-......+...|-..-|.. +...+.+. -..+.-..++..|.-.--...|..+.+.-...|+.+.|...-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 988877777664555554333332 22333333 34455556666664222355888888888899999999999999
Q ss_pred HHhhc
Q 037404 506 LIRLK 510 (605)
Q Consensus 506 ~~~~~ 510 (605)
+..+.
T Consensus 283 A~~L~ 287 (421)
T PRK12798 283 ALKLA 287 (421)
T ss_pred HHHhc
Confidence 99875
No 362
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.15 E-value=15 Score=31.78 Aligned_cols=22 Identities=27% Similarity=0.151 Sum_probs=9.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHH
Q 037404 478 PNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A 499 (605)
+|+..+.+|+..+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444433
No 363
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.03 E-value=1.6e+02 Score=35.87 Aligned_cols=306 Identities=9% Similarity=0.013 Sum_probs=158.1
Q ss_pred HHHHHHHhCCChhHHHHHHhhc----CCCC--cchHHHHHHHHHcCCChHHHHHHHHh-CCCCChhHHHHHHHHHHhcCC
Q 037404 188 SMIAGLVKGGELSEARRLFDEM----PERD--AVSWNTILDGYAKAGEMNLAFELFEK-IPHRNIVSWSTMVWGYSKDGD 260 (605)
Q Consensus 188 ~li~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 260 (605)
.+..+-.+.+.+.+|+..++.- .+.+ ..-|..+...|+..+++|....+... ...++. ..-+-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4556677888999999999884 2111 22344445588888988887777663 333332 233445667899
Q ss_pred HHHHHHHHhhCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCchHHHHHHHHH
Q 037404 261 MEMAKLLFDRMPAKTLV---PWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL-ISILAACAESGLLGLGMKVHAS 336 (605)
Q Consensus 261 ~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~ 336 (605)
++.|...|+.+.+.++. .++-++......|.++..+...+-.... ..+....+ +.-+.+--+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 99999999999865544 4777777777778888777765555443 22222222 233444467777777776655
Q ss_pred HHHcCCCCChhHHHH--HHHHHHhcCChHH--HHHHHhcCC----CC---------ChhHHHHHHHHHHHcCChHHHHHH
Q 037404 337 INKYRFKCNTNVCNA--LVDMYAKCGSLDN--AMSVFNGMT----KK---------DLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 337 ~~~~~~~~~~~~~~~--l~~~~~~~g~~~~--A~~~~~~~~----~~---------~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+. +...|.. ++....+..+-+. -.+..+.+. .+ -...|..++....-..-...
T Consensus 1543 --~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~---- 1612 (2382)
T KOG0890|consen 1543 --DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENS---- 1612 (2382)
T ss_pred --cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHH----
Confidence 11 1222222 2222222211111 011111111 00 01233333332221110000
Q ss_pred HHHHHHCCCCCCHHH------HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-----chHHHHHHHHHhhhcCCHHHHH
Q 037404 400 FSRMKDEGFGPDKYT------FVGVLCACTHAGFIDKGVQYFYSMERDYGILP-----QVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
.+.. .+..++..+ |..-+..-....+..+-+--+++..-.....| -..+|...++...+.|+++.|.
T Consensus 1613 ~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 0000 112222211 11111111111111111111111111111122 2456777788888899999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 469 RLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 469 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
..+-.++..--+..+...+.-....|+...|+.++++.++.+
T Consensus 1691 nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 877666322234455566777888999999999999998763
No 364
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.31 E-value=19 Score=26.84 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHH
Q 037404 28 KNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQ 107 (605)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 107 (605)
..-++|.-+-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-+|-. .+.|-.+.+..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 3445666666666655422 22222223445678999999999999999999999877654 45676777777777777
Q ss_pred hCCCCCCcccHH
Q 037404 108 EKGVFTDNFTYP 119 (605)
Q Consensus 108 ~~~~~p~~~~~~ 119 (605)
.+| .|....|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 765 33444443
No 365
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=78.20 E-value=12 Score=34.94 Aligned_cols=93 Identities=14% Similarity=0.076 Sum_probs=73.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC--C--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM--P--VEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~--~--~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
.|.-=++-|.+..++..|...|.+. . -.| +.+.|+.-..+-...|++..++.-..+++..+|.+...|..=+.+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444566678888899999998876 1 123 355666666666778999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 037404 524 FAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~ 542 (605)
+....++++|.+..+...+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHhhhhh
Confidence 9999998888888776644
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.77 E-value=5.7 Score=28.09 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=31.0
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCch---HHHHHHHHHhcCChHHHHHHH
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGN---YTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~ 537 (605)
...+.++|+..++++++..++.+.- +-.++.+|...|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888776555443 444556677778777766653
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=75.42 E-value=9.2 Score=38.42 Aligned_cols=99 Identities=16% Similarity=0.106 Sum_probs=64.6
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCC--chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDYGILP--QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
-.|+...|...+..+.. ..| .......|...+.+.|....|..++.+. .+ ...+.++..++.++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 36777777777777644 233 2223445566666777777777766554 21 23345666777777777888888
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
++.++.+.+..|+++.+-..|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888888888877776655543
No 368
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=75.37 E-value=33 Score=35.91 Aligned_cols=49 Identities=24% Similarity=0.250 Sum_probs=27.1
Q ss_pred HHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 456 DLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
..+.+.|.+++-.++++-. ..+.+-.-.+++.+|.+..+.+.+++|+..
T Consensus 352 ~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 352 SLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 3445666666655555432 122333445666677777777776665543
No 369
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=74.86 E-value=86 Score=30.53 Aligned_cols=64 Identities=13% Similarity=0.144 Sum_probs=50.6
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhhcCC-CCchHHHHHHHH-HhcCChHHHHHHHHHHHh
Q 037404 479 NAIIWGTL---LGACRKHNAVELAEEVLDCLIRLKGS-DPGNYTMLSNIF-AATGDWNKVANVRLQMKK 542 (605)
Q Consensus 479 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 542 (605)
|...|.++ +..+.+.|-+..|.++.+-+..++|. ||-.....++.| .+.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 56678899999999999999999998 888888888887 477888878888877655
No 370
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=74.66 E-value=80 Score=31.48 Aligned_cols=103 Identities=14% Similarity=0.010 Sum_probs=63.5
Q ss_pred HHHHhcCChHHHHHHHhcCC---CC---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-------CCCCCCH--
Q 037404 354 DMYAKCGSLDNAMSVFNGMT---KK---------DLVSWNAMLYGLAMHGQGEKALGLFSRMKD-------EGFGPDK-- 412 (605)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-------~g~~p~~-- 412 (605)
+.+.-.|++.+|.+++.... .+ ....||.|...+.+.|.+.-+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 34455677888877775432 11 112345555556666666666666666542 4555532
Q ss_pred ---------HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 413 ---------YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 413 ---------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
.+|+. .-.|...|++..|.+.|.+..+ -+..++..|..+.++|.
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~--vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVH--VFHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHH--HHhcCcHHHHHHHHHHH
Confidence 22332 2246778888889888888887 45667777887777764
No 371
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.02 E-value=1.3e+02 Score=32.04 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=28.3
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHhCC---CCChhHHHHHHHHHHhc
Q 037404 213 DAVSWNTILDGYAKAGEMNLAFELFEKIP---HRNIVSWSTMVWGYSKD 258 (605)
Q Consensus 213 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 258 (605)
|....-.+|-.|.+.|+++.|.++..... +.....+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 34444467778889999999998883332 33345556666666554
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.95 E-value=98 Score=30.73 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=68.1
Q ss_pred CCchHH-HHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHH
Q 037404 28 KNLNQT-KQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVF 103 (605)
Q Consensus 28 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (605)
|++..| +++++-+.+..-.|+.....+. .+...|+++.+...+.... ..+..+-..+++.....|+++.|...-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 555555 5666665554433443333333 3455678888877776554 345556667777777778888888887
Q ss_pred HHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC
Q 037404 104 LDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY 146 (605)
Q Consensus 104 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 146 (605)
+-|+...+. +..............|-++++...++.+...+.
T Consensus 381 ~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 381 EMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 777776555 333333332333344556666666666665543
No 373
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.19 E-value=1e+02 Score=33.75 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
|..|+..|...|++++|++++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 56666666666666666666666654
No 374
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=73.05 E-value=16 Score=27.28 Aligned_cols=54 Identities=7% Similarity=0.050 Sum_probs=37.9
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCC---------CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSD---------PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+.|++..|.+.+.+........ ......++.+....|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346788888877777776652211 123455777788889999999999988763
No 375
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.00 E-value=63 Score=30.11 Aligned_cols=94 Identities=11% Similarity=0.111 Sum_probs=62.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEG---FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
.+....+..-....+++.++..+-+++..- ..|+... ...++.|. .-++++++.++..=++ +|+-||..++..+
T Consensus 65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIq-YGiF~dqf~~c~l 141 (418)
T KOG4570|consen 65 LTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQFTFCLL 141 (418)
T ss_pred eehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcch-hccccchhhHHHH
Confidence 344444544455677888888887777531 1222222 22333333 3356688888877777 7889999999999
Q ss_pred HHHhhhcCCHHHHHHHHHhC
Q 037404 455 IDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~ 474 (605)
++.+.+.+++.+|.++...|
T Consensus 142 ~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred HHHHHhcccHHHHHHHHHHH
Confidence 99999999998888887665
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.81 E-value=39 Score=27.59 Aligned_cols=90 Identities=10% Similarity=0.170 Sum_probs=60.5
Q ss_pred HHhCCCCCC--cchHHHHHHHhccCChhHHHHHhcccC---------CCCcccHHHHHHHHHhCCC-chHHHHHHHHHHh
Q 037404 41 IKLDLQRDP--YIAPKLISSLALCRQMGLAIKVFNDIQ---------DPDVHLYNTLIRACVQNSL-NAQAFRVFLDMQE 108 (605)
Q Consensus 41 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~ 108 (605)
.+.+..++. ...|+++.-.+..++......+++.+. ..+...|.+++.+..+... --.+..+|..|.+
T Consensus 29 ~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~ 108 (145)
T PF13762_consen 29 QEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKK 108 (145)
T ss_pred hhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 334444443 345677777777788888877777664 2355567888888755554 3346677888887
Q ss_pred CCCCCCcccHHHHHHHhhccCC
Q 037404 109 KGVFTDNFTYPFLLKACNGKNW 130 (605)
Q Consensus 109 ~~~~p~~~~~~~ll~~~~~~~~ 130 (605)
.+.+++..-|..++.++.+...
T Consensus 109 ~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 109 NDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred cCCCCCHHHHHHHHHHHHcCCC
Confidence 7778888888888887765533
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.79 E-value=79 Score=29.12 Aligned_cols=157 Identities=13% Similarity=0.056 Sum_probs=73.7
Q ss_pred hcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHccCchH-HHH
Q 037404 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQM----EEAGLKPDDGTLISILAACAESGLLG-LGM 331 (605)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~ 331 (605)
+.+++++|.+++.. -...+.+.|+...|.++..-+ .+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666666554 233444555555444443333 33456666666566665555443211 122
Q ss_pred HHHHHHH---Hc--CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 037404 332 KVHASIN---KY--RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE 406 (605)
Q Consensus 332 ~~~~~~~---~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 406 (605)
.+.+.+. +. ....++.....+...|.+.|++.+|+..|-.-..++...+..++..... .
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~----------------~ 134 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWST----------------K 134 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHH----------------H
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHH----------------h
Confidence 2222222 22 2234678888899999999999998887754433332222222221111 2
Q ss_pred CCCCCHHHH-HHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 407 GFGPDKYTF-VGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 407 g~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
|.+.+...| ...+--|...++...|...+....+
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 222222222 1222235667778888877776665
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.19 E-value=18 Score=26.31 Aligned_cols=66 Identities=9% Similarity=0.058 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHH
Q 037404 33 TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAF 100 (605)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 100 (605)
+.++++.+.+.|+ .+..-...+-.+-...|+.+.|+.++..++ ..+..|...+.++...|.-.-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4677888888774 333333333332236688999999999988 78888899999988888765553
No 379
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.16 E-value=27 Score=27.43 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
+..+-++.+..-.+-|++......+++|.+.+++..|..+|+.++.+ ..+....|-.++ ++-.-.++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v---------~elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV---------KELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH---------HHHHHHHHHh
Confidence 45566667777788999999999999999999999999999998774 344444565554 3444555555
Q ss_pred CC
Q 037404 475 PV 476 (605)
Q Consensus 475 ~~ 476 (605)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
No 380
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=71.76 E-value=36 Score=27.08 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 498 LAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 498 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
.+..+|+.+.... ...+..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 6777777777653 455667778888888888888888888753
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=71.62 E-value=97 Score=30.46 Aligned_cols=54 Identities=6% Similarity=-0.007 Sum_probs=35.8
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhc--ccCCHHHHHHHHHHhHH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEGFGPDKY--TFVGVLCACT--HAGFIDKGVQYFYSMER 440 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 440 (605)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++.+|.+.++....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344678888888888888876 555544 3444445443 35567788888887765
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.22 E-value=22 Score=31.03 Aligned_cols=127 Identities=15% Similarity=0.031 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHh-hCCCCchHHHHHHHH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERD-YGILPQVEHYGCMID 456 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~ 456 (605)
+.+..++.+.+.+...+++...++-++. +| |..+-..++..++-.|++++|..-++-+-.- ....+....|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4455677888899999999998887775 45 4455667788899999999998887766430 122334556666665
Q ss_pred HhhhcCCHHHHH-HHHHhC--C---CCCCHHHHHHHHHHH-HhcC-CHHHHHHHHHHHHhhcCCCC
Q 037404 457 LLGRSGRLKEAL-RLVQSM--P---VEPNAIIWGTLLGAC-RKHN-AVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 457 ~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~~l~~~~-~~~g-~~~~A~~~~~~~~~~~p~~~ 514 (605)
+- .+. ++|.-- + -.|.+.-...+..+. ++.+ .-+.+..+-+.+.+..|..+
T Consensus 81 ~e-------a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 81 CE-------AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HH-------HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 42 222 233322 1 123333333344333 3333 44445555566666555543
No 383
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.10 E-value=23 Score=28.83 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 464 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
-+.|.++.+-|+ ...............|++..|.++.+.++..+|++...-...+++|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 456777777775 2344444566677899999999999999999999999988888888777653
No 384
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=70.21 E-value=19 Score=26.15 Aligned_cols=37 Identities=16% Similarity=0.156 Sum_probs=20.0
Q ss_pred cCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEA 295 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 295 (605)
.|+.+.|.+++..+. +++..|..++.++...|...-|
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 355555555555555 5555555555555555544333
No 385
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.09 E-value=12 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=14.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHc
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEA 305 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~ 305 (605)
|..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 386
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=69.73 E-value=33 Score=26.41 Aligned_cols=26 Identities=19% Similarity=0.501 Sum_probs=22.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
|..|+..|...|.+++|++++.+..+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 78888888888999999999888876
No 387
>PRK10941 hypothetical protein; Provisional
Probab=69.71 E-value=28 Score=32.06 Aligned_cols=68 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
.+.+-.+|.+.++++.|+.+.+.+ ...|+ +.-+.--+-.|.+.|.+..|..-++..++..|++|.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 455667788999999999999887 44454 556666777789999999999999999998898886533
No 388
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=69.62 E-value=14 Score=37.32 Aligned_cols=88 Identities=16% Similarity=0.080 Sum_probs=72.8
Q ss_pred hhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
....|+...|.+.+..+ ...|- .+....|.....+.|-...|-.++.+.+.+....|-++..+++++....+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34579999999988876 33343 2345567777888888899999999999998888889999999999999999999
Q ss_pred HHHHHHHhCCC
Q 037404 535 NVRLQMKKTRA 545 (605)
Q Consensus 535 ~~~~~~~~~~~ 545 (605)
+.++++.+...
T Consensus 697 ~~~~~a~~~~~ 707 (886)
T KOG4507|consen 697 EAFRQALKLTT 707 (886)
T ss_pred HHHHHHHhcCC
Confidence 99999988654
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=69.52 E-value=30 Score=25.74 Aligned_cols=26 Identities=31% Similarity=0.243 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
..+.......|++++|...+++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556667778999999999888886
No 390
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=68.74 E-value=10 Score=33.24 Aligned_cols=56 Identities=13% Similarity=0.154 Sum_probs=39.8
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+.++.+.|.+++.+++++-|.....|..++..-.+.|+.+.|..-|++..+.++
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 34566777777777777777777777777777777777777777777777776544
No 391
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.44 E-value=48 Score=25.26 Aligned_cols=89 Identities=11% Similarity=-0.018 Sum_probs=55.0
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
.++..=.......+|..+.+.+...+......+. .-+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+.
T Consensus 11 ElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~l-Ir~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~ 87 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADWLEQEGEMEEVVAL-IRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASA 87 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHH-HHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHH
Confidence 3333444456667888888888887652333333 33344678899999955555556788888866544 57888888
Q ss_pred HHHHHHHHHhCC
Q 037404 99 AFRVFLDMQEKG 110 (605)
Q Consensus 99 a~~~~~~m~~~~ 110 (605)
+...+.++-.+|
T Consensus 88 ~e~~l~rla~~g 99 (116)
T PF09477_consen 88 LESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHHCT-S
T ss_pred HHHHHHHHHhCC
Confidence 888888776664
No 392
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=68.42 E-value=30 Score=27.65 Aligned_cols=72 Identities=11% Similarity=0.045 Sum_probs=47.4
Q ss_pred CCchHHHHHHHHHhhhcCC---HHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 445 LPQVEHYGCMIDLLGRSGR---LKEALRLVQSM-P-VEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
.++..+--.+..++.+..+ ..+.+.++++. + -.|+ .....-|.-++.+.|++++++++++..++.+|++..+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4444555556666666554 44555666655 2 2333 2344456678889999999999999999988887653
No 393
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=67.24 E-value=94 Score=27.83 Aligned_cols=84 Identities=14% Similarity=0.013 Sum_probs=42.9
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQV-EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAII-WGTLLGACRKHNAVELA 499 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A 499 (605)
.....++.|+..|.+.+. +.|+. .-|..-+.++.+..+++.+..-..+. .+.||..- ...+..+......+++|
T Consensus 21 f~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred cchhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHH
Confidence 334445555555554433 34444 33444555555666666655544443 44455442 22334444555666666
Q ss_pred HHHHHHHHhh
Q 037404 500 EEVLDCLIRL 509 (605)
Q Consensus 500 ~~~~~~~~~~ 509 (605)
+..+.++..+
T Consensus 98 I~~Lqra~sl 107 (284)
T KOG4642|consen 98 IKVLQRAYSL 107 (284)
T ss_pred HHHHHHHHHH
Confidence 6666666443
No 394
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=67.23 E-value=17 Score=33.47 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=42.8
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+.|+.++|..+|+.++.+.|.++.++..++.......+.-+|-++|-++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 4678888899999998888898888888888888877888888887766654
No 395
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=67.10 E-value=53 Score=30.02 Aligned_cols=60 Identities=22% Similarity=0.147 Sum_probs=53.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+=..+.+.++++.|.+..++.+..+|.+|.-...-|-+|.+.|-+.-|++-++...+..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~ 245 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHC 245 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhC
Confidence 344667888999999999999999999999889999999999999999999999877753
No 396
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.63 E-value=1.3e+02 Score=29.28 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=84.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH-
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM- 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l- 454 (605)
.+.++-.+...+.+.|+.+.|.+++++..-.--..-...|..+.. -...|.. .-++...-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~-~~~~g~~----------rL~~~~~eNR~fflal~ 107 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS-NLTSGNC----------RLDYRRPENRQFFLALF 107 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccccCcc----------ccCCccccchHHHHHHH
Confidence 455666666677777777777777776542100000000100000 0000100 0001222244444433
Q ss_pred --HHHhhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhc--C---CCCchHHHHHHH
Q 037404 455 --IDLLGRSGRLKEALRLVQSM-PVEP--NAIIWGTLLGAC-RKHNAVELAEEVLDCLIRLK--G---SDPGNYTMLSNI 523 (605)
Q Consensus 455 --~~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~--p---~~~~~~~~l~~~ 523 (605)
+..+.+.|-+..|+++.+-+ ...| |+.....++..| .+.++++--+++++...... . .-|...+..+-+
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA 187 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALA 187 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHH
Confidence 55677888888888887766 4444 344444445554 46678887777777755521 1 134566777777
Q ss_pred HHhcCCh---------------HHHHHHHHHHHh
Q 037404 524 FAATGDW---------------NKVANVRLQMKK 542 (605)
Q Consensus 524 ~~~~g~~---------------~~A~~~~~~~~~ 542 (605)
+...++- ++|.+.+++++.
T Consensus 188 ~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~ 221 (360)
T PF04910_consen 188 YFRLEKEESSQSSAQSGRSENSESADEALQKAIL 221 (360)
T ss_pred HHHhcCccccccccccccccchhHHHHHHHHHHH
Confidence 7777777 788888877754
No 397
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=66.43 E-value=20 Score=25.49 Aligned_cols=16 Identities=6% Similarity=-0.002 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHhHH
Q 037404 425 AGFIDKGVQYFYSMER 440 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~ 440 (605)
.+..++|+..|..+.+
T Consensus 19 ~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 19 QNETQQALQKWRKALE 34 (80)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3344444444444443
No 398
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=66.23 E-value=72 Score=29.27 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=7.0
Q ss_pred HHHHHhcCChHHHHH
Q 037404 353 VDMYAKCGSLDNAMS 367 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~ 367 (605)
|++++..++|.++..
T Consensus 90 IQALAEmnrWreVLs 104 (309)
T PF07163_consen 90 IQALAEMNRWREVLS 104 (309)
T ss_pred HHHHHHHhhHHHHHH
Confidence 444444455444433
No 399
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.04 E-value=1.9e+02 Score=30.81 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=88.9
Q ss_pred HHHHHHHHH-hCCCCC--CcchHHHHHHHh-ccCChhHHHHHhcccC----CCCcc-----cHHHHHHHHHhCCCchHHH
Q 037404 34 KQLFAQIIK-LDLQRD--PYIAPKLISSLA-LCRQMGLAIKVFNDIQ----DPDVH-----LYNTLIRACVQNSLNAQAF 100 (605)
Q Consensus 34 ~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~----~~~~~-----~~~~ll~~~~~~~~~~~a~ 100 (605)
+..++.+.+ ..++|. ..++..+.+.+. ...+++.|+..+++.. +++.. .-..++..+.+.+. ..|.
T Consensus 41 i~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~-~~a~ 119 (608)
T PF10345_consen 41 IKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNP-KAAL 119 (608)
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCH-HHHH
Confidence 444555553 222222 345556677666 6788999999888664 22221 11234455555554 4488
Q ss_pred HHHHHHHhCC----CCCCcccHHHH-HHHhhccCCHHHHHHHHHHHHHhC---CCCCcchhhHHHHHHHhcCCCChHHHH
Q 037404 101 RVFLDMQEKG----VFTDNFTYPFL-LKACNGKNWFHLVQMIHALIYKCG---YFGDIFVPNSLIDSYSKCGVVGVSLAK 172 (605)
Q Consensus 101 ~~~~~m~~~~----~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~a~ 172 (605)
..+++..+.- ..+-...|..+ +..+...++...|.+.++.+...- .+|-..++..++.+.........+++.
T Consensus 120 ~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~ 199 (608)
T PF10345_consen 120 KNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVL 199 (608)
T ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 8887766531 11122223332 222223378888888887776543 233344455555555444322444555
Q ss_pred HHHhccC----C---------CCeehHHHHHHHH--HhCCChhHHHHHHhhc
Q 037404 173 KLFMSMG----E---------RDIVSWNSMIAGL--VKGGELSEARRLFDEM 209 (605)
Q Consensus 173 ~~~~~~~----~---------~~~~~~~~li~~~--~~~g~~~~A~~~~~~~ 209 (605)
+.+++.. . +...+|..+++.+ ...|+++.+...++++
T Consensus 200 ~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 200 ELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5444331 0 1223455555443 3556666666555554
No 400
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=65.89 E-value=1.1e+02 Score=28.27 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=27.4
Q ss_pred CCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-----CCeehHHHHHHHHHhCCChhHHHHHHh
Q 037404 147 FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-----RDIVSWNSMIAGLVKGGELSEARRLFD 207 (605)
Q Consensus 147 ~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 207 (605)
.++..+....+..++..+ ++..-.+.++.... .|...|..+|+.....|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~--dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESR--DWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcc--cHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 334444444445555554 55554444443321 244445555555555555444444443
No 401
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.47 E-value=1.1e+02 Score=28.09 Aligned_cols=159 Identities=14% Similarity=0.087 Sum_probs=77.9
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHH----HHHCCCCCCHHHHHHHHHHhcccCCHH-HHH
Q 037404 358 KCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSR----MKDEGFGPDKYTFVGVLCACTHAGFID-KGV 432 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~g~~~-~a~ 432 (605)
+++++++|.+++.. =...+.+.|+...|-++..- ..+.+.+++......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665532 12334555655554444333 334566666665555555544333211 122
Q ss_pred HHHHHhHHh--hCCC--CchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 433 QYFYSMERD--YGIL--PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 433 ~~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
++.+.+++- .+-. -++.....++..|.+.|++.+|...|-... .|+...+..++......|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 233333321 1222 356777888899999999999888876653 2223322223332233332
Q ss_pred hcCCCCchHHH-HHHHHHhcCChHHHHHHHHHHHhC
Q 037404 509 LKGSDPGNYTM-LSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 509 ~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|.....+.. .+--|...|+...|...++...+.
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333333333 223467789999999988887764
No 402
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=65.37 E-value=1e+02 Score=27.52 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=36.1
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
..+|+-.-.|.+.....++..|. .+++++|.+.+.++.+.|+.|... .+.+.+.+
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 34444445667777777776654 578889999999988888877543 23344443
No 403
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=64.96 E-value=1.2e+02 Score=28.33 Aligned_cols=146 Identities=12% Similarity=-0.019 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-----
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH----AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG----- 462 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----- 462 (605)
+..+|..+|..+-+.|..+ ....+...|.. ..+..+|..+++++.+ .|..+.......+...|....
T Consensus 92 ~~~~A~~~~~~~a~~g~~~---a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~-~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 92 DKTKAADWYRCAAADGLAE---ALFNLGLMYANGRGVPLDLVKALKYYEKAAK-LGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cHHHHHHHHHHHhhcccHH---HHHhHHHHHhcCCCcccCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHcChhhhcc
Confidence 4555666666555544221 11112222222 2366677777777666 344443222333444443321
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC--------
Q 037404 463 --RLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG-------- 528 (605)
Q Consensus 463 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 528 (605)
+...|...+.++-..-+......+...|.. ..+.++|...|+++.+... ......++ .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~ 244 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAF 244 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhh
Confidence 223677777776222244444445544433 2378889999998888655 55666666 555555
Q ss_pred -------ChHHHHHHHHHHHhCC
Q 037404 529 -------DWNKVANVRLQMKKTR 544 (605)
Q Consensus 529 -------~~~~A~~~~~~~~~~~ 544 (605)
+...|...+......+
T Consensus 245 ~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 245 LTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cccccCCCHHHHHHHHHHHHHcC
Confidence 6667777777776654
No 404
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=64.80 E-value=32 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.051 Sum_probs=29.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 475 PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 475 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
...|++.++..++.++...|+.++|.+...++....|
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4567888888888888888888888888888888877
No 405
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.57 E-value=1.6e+02 Score=29.41 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHcCCChHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCCHHHHHHHHhh
Q 037404 222 DGYAKAGEMNLAFELFEKIPHRNI---VSWSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
...+..|+.+-+..+++.....+. .-. +-+...+..|+.+-+.-+++.
T Consensus 140 h~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 140 HLAVMMGDIKGIELLIDHKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred HHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 334445555555555544332211 111 222233445555555555544
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=64.08 E-value=96 Score=28.51 Aligned_cols=88 Identities=13% Similarity=0.010 Sum_probs=46.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHH----
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYA---- 357 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 357 (605)
=|++++..+++.+++...-+--+.--+.-.......|-.|.+.+.+..+.++-....+..-.-+..-|.++++.|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 3567777777777776654443321111223334445556667776666666555544322223333555555443
Q ss_pred -hcCChHHHHHHH
Q 037404 358 -KCGSLDNAMSVF 369 (605)
Q Consensus 358 -~~g~~~~A~~~~ 369 (605)
-.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 356666666655
No 407
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.92 E-value=1.5e+02 Score=30.45 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCc------------hHHHHHHHHHhhhcCCHHHHHHHHHhCC--------------
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQ------------VEHYGCMIDLLGRSGRLKEALRLVQSMP-------------- 475 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------------- 475 (605)
+.....++++...|..... ...|+ +.+...+..++..+|+.+-|..++++.-
T Consensus 248 ~~hs~sYeqaq~~F~~av~--~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~ 325 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVI--VHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPF 325 (665)
T ss_pred eecchHHHHHHHHHHHHHh--hcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccc
Q ss_pred ---------CCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhhcCC-CCchHHHHHHHH-HhcCChHHHHHHHHHHH
Q 037404 476 ---------VEPNAIIWGTL---LGACRKHNAVELAEEVLDCLIRLKGS-DPGNYTMLSNIF-AATGDWNKVANVRLQMK 541 (605)
Q Consensus 476 ---------~~p~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~ 541 (605)
..-|...|.++ +....+.|-+..|.++.+-++.++|. ||-....+++.| .++.+|.=-+++.+...
T Consensus 326 sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 326 SGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred cccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hCC
Q 037404 542 KTR 544 (605)
Q Consensus 542 ~~~ 544 (605)
..+
T Consensus 406 ~~n 408 (665)
T KOG2422|consen 406 NMN 408 (665)
T ss_pred hhc
No 408
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=63.44 E-value=82 Score=25.76 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=31.4
Q ss_pred ChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 376 DLVSWNAMLYGLAMHGQ-GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
+..+|.+++.+..+..- ---+..+|+.|.+.+.+++..-|..++.++.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44566667766644443 334556667777666777777777777766554
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=63.38 E-value=32 Score=29.88 Aligned_cols=51 Identities=18% Similarity=0.002 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
...+.+......+.+.+.....|++.+|..++..+...|+.++|.+...++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444433445677777777777777777777777777766
No 410
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=62.15 E-value=55 Score=25.18 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 498 LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.+.+.+.+...+.|..+..+..++.-+...-.|+++..--++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 35567777777777776666666666555555565555544443
No 411
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.13 E-value=30 Score=20.26 Aligned_cols=18 Identities=11% Similarity=-0.073 Sum_probs=9.3
Q ss_pred HHHHHHHhcCCHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEV 502 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~ 502 (605)
.+...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344445555566666655
No 412
>PHA02875 ankyrin repeat protein; Provisional
Probab=61.37 E-value=1.8e+02 Score=29.00 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCCCcc--hHHHHHHHhccCChhHHHHHhcccCCCCcc--cHHHHHHHHHhCCCchHHHHHHHHHHhCC
Q 037404 35 QLFAQIIKLDLQRDPYI--APKLISSLALCRQMGLAIKVFNDIQDPDVH--LYNTLIRACVQNSLNAQAFRVFLDMQEKG 110 (605)
Q Consensus 35 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 110 (605)
++.+.+++.|..++... ....+...+..|+.+-+.-+++.-..++.. ...+.+...+..|+.+.+..+++ .|
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~ 91 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LG 91 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cC
Confidence 44555566676665432 234455556778877666666543322221 11234455566777766544443 33
Q ss_pred CCCC----cccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCChHHHHHHHhccCCC---
Q 037404 111 VFTD----NFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV--PNSLIDSYSKCGVVGVSLAKKLFMSMGER--- 181 (605)
Q Consensus 111 ~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~a~~~~~~~~~~--- 181 (605)
...+ ..-. +.+...+..|+.+ +.+.+++.|..++... -.+.+...+..| +.+.+..+++.-...
T Consensus 92 ~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~--~~~~v~~Ll~~g~~~~~~ 164 (413)
T PHA02875 92 KFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMG--DIKGIELLIDHKACLDIE 164 (413)
T ss_pred CcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCCCCC
Confidence 2211 1111 2233344455554 4444556676654432 233455555667 777666666654332
Q ss_pred CeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcc---hHHHHHHHHHcCCChHHHHHHHHhCCCCC
Q 037404 182 DIVSWNSMIAGLVKGGELSEARRLFDEMPERDAV---SWNTILDGYAKAGEMNLAFELFEKIPHRN 244 (605)
Q Consensus 182 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 244 (605)
|..-++.+ ...+..|+.+-+.-+++.-..++.. .....+...+..|+.+-+.-+++....++
T Consensus 165 d~~g~TpL-~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n 229 (413)
T PHA02875 165 DCCGCTPL-IIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229 (413)
T ss_pred CCCCCCHH-HHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence 22222222 2334456665555555444333221 11234444445566666665555554443
No 413
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.36 E-value=54 Score=25.81 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=37.0
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 473 SMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 473 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
.+.+-|++.+...-+++|.+-+|+..|.++++-....-+..-..|-.++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYV 125 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 3456788888899999999999999999999887776555444454443
No 414
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=60.96 E-value=71 Score=24.95 Aligned_cols=84 Identities=12% Similarity=0.033 Sum_probs=0.0
Q ss_pred hhcCCHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----------
Q 037404 459 GRSGRLKEALRLVQSM-----PVEP---------NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP---------- 514 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------- 514 (605)
...|.+++|..-+.+. .++| |...+..|..++...|++++++...+.++.......
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Q ss_pred -chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 515 -GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 515 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+.+.-+.++...|+.++|...|+..-+
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
No 415
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=59.81 E-value=22 Score=32.88 Aligned_cols=81 Identities=9% Similarity=0.075 Sum_probs=58.7
Q ss_pred CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 443 GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGT-LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.+..|+..|...+..-.+.|.+.+...+|.++ ...| |+..|-. ...-+...++++.++.++.+.++.+|++|..|..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 45567777777777777777888888888776 3333 4555532 2334556799999999999999999999998876
Q ss_pred HHHH
Q 037404 520 LSNI 523 (605)
Q Consensus 520 l~~~ 523 (605)
..+.
T Consensus 182 yfr~ 185 (435)
T COG5191 182 YFRM 185 (435)
T ss_pred HHHH
Confidence 5443
No 416
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=59.02 E-value=14 Score=29.30 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=26.8
Q ss_pred HHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHh
Q 037404 89 ACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC 125 (605)
Q Consensus 89 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 125 (605)
.+...|.-..|-.+|++|+++|-+||. ++.|+..+
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 445567778899999999999988875 67776654
No 417
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.01 E-value=16 Score=32.13 Aligned_cols=57 Identities=23% Similarity=0.282 Sum_probs=39.4
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 457 LLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
+..+.++.+.|.+++.+. ...| ....|-.+.....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 345567777777777766 3333 35577777777777788888888888888877765
No 418
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=58.58 E-value=12 Score=35.10 Aligned_cols=116 Identities=16% Similarity=0.118 Sum_probs=66.7
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAI-IWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~ 501 (605)
..|.++.|++.+...+. --++....|..-..++.+.++...|++-++.. .+.||.. -|..-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 45667777777766665 33444555555666677777777777666655 4555533 44444455556677777777
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 502 VLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..+.+++-+ ..+-..+-.+.-..+..++-...+++..+
T Consensus 204 dl~~a~kld~d-E~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 204 DLALACKLDYD-EANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHhcccc-HHHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 77777776433 22333444445555555555554444444
No 419
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=58.42 E-value=72 Score=23.53 Aligned_cols=54 Identities=22% Similarity=0.100 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchHHHHHHHHHhcCChH
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSNIFAATGDWN 531 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~ 531 (605)
.|...-..+...+...|++++|.+.+-++++.++. +...-..++.++...|.-+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34566677788888889999999888888887654 4566777888888777754
No 420
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.36 E-value=1.7e+02 Score=27.92 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=75.0
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh---cCChHHHHHHHHH
Q 037404 465 KEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA---TGDWNKVANVRLQ 539 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 539 (605)
+.-+.+++++ ...| +...+..++..+.+..+.++..+-+++++..+|.++..|..+++.... .-.+++...+|.+
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 3444555554 2234 455777788888888899999999999999999999998888877544 3357788888888
Q ss_pred HHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCCh-HHHHHHHHHHHHHhhhcCCC
Q 037404 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKS-EQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~l~~~~~~~g~~ 593 (605)
..+.-.....+. .......+.. ..+..++-++-..+.+.|+.
T Consensus 128 ~l~~L~~~~~~~------------~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~ 170 (321)
T PF08424_consen 128 CLRALSRRRSGR------------MTSHPDLPELEEFMLYVFLRLCRFLRQAGYT 170 (321)
T ss_pred HHHHHHHhhccc------------cccccchhhHHHHHHHHHHHHHHHHHHCCch
Confidence 776421111110 0111112222 34456666777788888875
No 421
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.67 E-value=3e+02 Score=30.42 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEK 109 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 109 (605)
.-|..|+.-|...|+.++|+++|.+....
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 34888999999999999999999988763
No 422
>PRK13342 recombination factor protein RarA; Reviewed
Probab=57.43 E-value=2.1e+02 Score=28.58 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=28.6
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 380 WNAMLYGLAM---HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 380 ~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
+..+++++.+ .++.+.|+.++.+|.+.|..|....-..+..++..
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3444444444 47888999999999988877765544444444333
No 423
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=55.96 E-value=91 Score=28.00 Aligned_cols=69 Identities=14% Similarity=-0.014 Sum_probs=51.2
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
.+..+..++...|++-++++...+. ...| +...|-.-..+.+..-+.++|..-+.++++++|.-..+..
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 4455566777788888888888776 3334 4557777777777778899999999999999887554433
No 424
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=54.90 E-value=2.3e+02 Score=28.23 Aligned_cols=171 Identities=10% Similarity=-0.050 Sum_probs=77.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCC
Q 037404 86 LIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGV 165 (605)
Q Consensus 86 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 165 (605)
.|+++...| +.+...+-...... ++...+.....++....+......+.+.+ -.++..+.....+++...+
T Consensus 44 hLdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~~~~~~~~~L~~~L----~d~~~~vr~aaa~ALg~i~- 114 (410)
T TIGR02270 44 HVDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQEDALDLRSVLAVL----QAGPEGLCAGIQAALGWLG- 114 (410)
T ss_pred HHHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhccCChHHHHHHHHHh----cCCCHHHHHHHHHHHhcCC-
Confidence 366666676 45666555555331 22333333333333222222122222222 1334445666666776666
Q ss_pred CChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCCh
Q 037404 166 VGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI 245 (605)
Q Consensus 166 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 245 (605)
+......+..-+...+.......+.++...+. +-...+..-+..+|...-...+.++...++.+..-.+..-....|.
T Consensus 115 -~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a~~~L~~al~d~~~ 192 (410)
T TIGR02270 115 -GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRRLSESTLRLYLRDSDP 192 (410)
T ss_pred -chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccccchHHHHHHHcCCCH
Confidence 55555555555555555554445555544331 1111111222344444444555555555544333333333334555
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHH
Q 037404 246 VSWSTMVWGYSKDGDMEMAKLLF 268 (605)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~a~~~~ 268 (605)
.+-..-+.+....|. ..|...+
T Consensus 193 ~VR~aA~~al~~lG~-~~A~~~l 214 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAWGVC 214 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHHHHH
Confidence 555555555555555 3443333
No 425
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=54.67 E-value=27 Score=34.44 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhcccCCHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhhcC
Q 037404 385 YGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGV-LCACTHAGFIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGRSG 462 (605)
Q Consensus 385 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 462 (605)
..+...+.++.|..++.+.++ +.||...|... ..++.+.+++..|+.=...+++. .|+ ...|..=+.++.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhHH
Confidence 344455666667777766666 35554443322 25566666666666655555541 122 122222222333344
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 037404 463 RLKEALRLVQSM-PVEPNAIIWGTLLGAC 490 (605)
Q Consensus 463 ~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 490 (605)
.+.+|+..|+.. .+.|+..-+...+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 455555555554 4455555444444433
No 426
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=53.02 E-value=15 Score=28.72 Aligned_cols=27 Identities=48% Similarity=0.679 Sum_probs=20.0
Q ss_pred ceeEEEeCCeEEEEEeCCCCCCChHHHHHHH
Q 037404 550 GASSVEVDNEVHEFSVCDQLHPKSEQIYQMI 580 (605)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 580 (605)
|++|..+ +.|.+|+..+|..+.+..++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~ 28 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMK 28 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence 5677655 88999999999985554433
No 427
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=52.80 E-value=3.4e+02 Score=29.64 Aligned_cols=217 Identities=16% Similarity=0.066 Sum_probs=108.7
Q ss_pred HccCchHHHHHHHHHHHHcCCCCCh-------hHHHHH-HHHHHhcCChHHHHHHHhcCC--------CCChhHHHHHHH
Q 037404 322 AESGLLGLGMKVHASINKYRFKCNT-------NVCNAL-VDMYAKCGSLDNAMSVFNGMT--------KKDLVSWNAMLY 385 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l-~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~ 385 (605)
....++++|..+..++...-..|+. ..++.| .......|+++.|.++.+... ......+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3445666666666555432212111 112222 222345677777777665443 124456677777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHH--HHhcccCCHH--HHHHHHHHhHHhhCCC-----CchHHHHH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEGFGPDKYTF---VGVL--CACTHAGFID--KGVQYFYSMERDYGIL-----PQVEHYGC 453 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~---~~ll--~~~~~~g~~~--~a~~~~~~~~~~~~~~-----~~~~~~~~ 453 (605)
+..-.|++++|..+..+..+..-.-+...+ ..+. ..+...|... +....+.......... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 777888888888887766553222233322 2222 2355566332 2223333332211111 12233344
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-Cch-HH---H
Q 037404 454 MIDLLGRSGRLKEALRLVQSM-----PVEPNAI----IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-PGN-YT---M 519 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~-~~---~ 519 (605)
+..++.+ ++.+..-.... ...|... .+..++......|+.++|...+.++....... +.. |. .
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444444 34333332222 1223222 22356677788899999999999988863222 222 22 2
Q ss_pred HHH--HHHhcCChHHHHHHHHHHH
Q 037404 520 LSN--IFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 520 l~~--~~~~~g~~~~A~~~~~~~~ 541 (605)
.+. ....+|+..+|...+.+-.
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s~ 686 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKSG 686 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhcc
Confidence 222 2356788888888776643
No 428
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=51.71 E-value=1.2e+02 Score=24.09 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 499 AEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 499 A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
..++|..+.+.. ...+..|...+..+...|++.+|.++++
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666543 4455667777888888888888888875
No 429
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.65 E-value=1.7e+02 Score=30.49 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=65.6
Q ss_pred hhcCCHHHHHHHHHhC-C-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 459 GRSGRLKEALRLVQSM-P-VEPN------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
.+..++..+.+.|..- . +..| ......+.-+|....+.|.|.++++++.+.+|.++-.-.....+....|+-
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~S 444 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKS 444 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcch
Confidence 4556777777777543 1 1111 234556667777888999999999999999999998888888889999999
Q ss_pred HHHHHHHHHHHhCC
Q 037404 531 NKVANVRLQMKKTR 544 (605)
Q Consensus 531 ~~A~~~~~~~~~~~ 544 (605)
++|+..+......-
T Consensus 445 e~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 445 EEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999988887643
No 430
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=50.81 E-value=78 Score=22.87 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=7.0
Q ss_pred hccCChhHHHHHhc
Q 037404 60 ALCRQMGLAIKVFN 73 (605)
Q Consensus 60 ~~~g~~~~A~~~~~ 73 (605)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455555555554
No 431
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.42 E-value=2.6e+02 Score=27.45 Aligned_cols=58 Identities=12% Similarity=0.009 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC------CcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAK------TLVPWTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
.+..+...|..+|+++.|.+.+.+..+- -+..|-.+|..-.-.|+|.....+..+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4555666677777777777777664321 111155556655666677666666666554
No 432
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=50.40 E-value=3.8e+02 Score=29.38 Aligned_cols=220 Identities=13% Similarity=-0.006 Sum_probs=118.4
Q ss_pred HHHhcCCHHHHHHHHhhCC----CCCccc-------HHHHHHH-HHhCCChHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 037404 254 GYSKDGDMEMAKLLFDRMP----AKTLVP-------WTIIISG-YAEKGMAKEAARLYDQMEEAG----LKPDDGTLISI 317 (605)
Q Consensus 254 ~~~~~~~~~~a~~~~~~~~----~~~~~~-------~~~l~~~-~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~l 317 (605)
......++++|..+..++. .++... |+.+-.. ....|++++|+++.+.....= ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456778888888877653 222221 5554433 345788999999888877541 22333455566
Q ss_pred HHHHHccCchHHHHHHHHHHHHcCCCCChhHHHH---H--HHHHHhcCChH--HHHHHHhcCC-----CCC-----hhHH
Q 037404 318 LAACAESGLLGLGMKVHASINKYRFKCNTNVCNA---L--VDMYAKCGSLD--NAMSVFNGMT-----KKD-----LVSW 380 (605)
Q Consensus 318 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~g~~~--~A~~~~~~~~-----~~~-----~~~~ 380 (605)
..+..-.|++++|..+.++..+..-..+...+.. + ...+...|+.. +.+..|.... ... ..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6677788999999988887765433333333332 2 22345566322 2233333221 111 1334
Q ss_pred HHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhcccCCHHHHHHHHHHhHHhhCCCC----chHHHHH
Q 037404 381 NAMLYGLAMH-GQGEKALGLFSRMKDEGFGPDKYTF--VGVLCACTHAGFIDKGVQYFYSMERDYGILP----QVEHYGC 453 (605)
Q Consensus 381 ~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~ 453 (605)
..+..++.+. +...++..-+.--......|-.... ..++......|+.++|...+.++..- ...+ +...-..
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l-~~~~~~~~~~~a~~~ 662 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL-LLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-hcCCCCCchHHHHHH
Confidence 4444444441 2222233333322222222222222 35677888999999999999888762 3333 2111122
Q ss_pred HH--HHhhhcCCHHHHHHHHHhC
Q 037404 454 MI--DLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 454 l~--~~~~~~g~~~~A~~~~~~~ 474 (605)
.+ ......|+.+++.....+-
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHhc
Confidence 22 2335678888888777664
No 433
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=50.09 E-value=4.2e+02 Score=29.88 Aligned_cols=28 Identities=14% Similarity=-0.059 Sum_probs=14.8
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 037404 235 ELFEKIPHRNIVSWSTMVWGYSKDGDME 262 (605)
Q Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 262 (605)
.+...+..++..+-..-+..+.+.+..+
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~~ 652 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPPG 652 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcchh
Confidence 3344444556655555556655555443
No 434
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.82 E-value=27 Score=37.25 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=29.8
Q ss_pred hhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 458 LGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
...+|+++.|++...+.. +..+|..|+....++|+.+-|+..|++...
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 345666666666666554 456666666666666666666666665544
No 435
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=49.07 E-value=1.2e+02 Score=27.59 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGS------DPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
.++.-|...|++++|.++++.+...... ...+...+..++.+.|+.++.+.+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556666677777777777766543211 1234445566666677766666554433
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.57 E-value=4e+02 Score=29.19 Aligned_cols=180 Identities=16% Similarity=0.164 Sum_probs=114.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Q 037404 286 YAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA 365 (605)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 365 (605)
-.-+.++++.+.+.+...--| ..++.-+.+.|.++-|..+.+.= .+ -......+|+++.|
T Consensus 603 ALi~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~---------~t---RF~LaLe~gnle~a 662 (1202)
T KOG0292|consen 603 ALLNKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDE---------RT---RFELALECGNLEVA 662 (1202)
T ss_pred HHHhhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCc---------ch---heeeehhcCCHHHH
Confidence 334556776666554332211 23444555667777666554321 11 12345678999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 366 MSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 366 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
++.-.++- +..+|..|...-...|+.+-|+..|++.+. |..|--.|.-.|+.++-.+....+.. .
T Consensus 663 le~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~----r 727 (1202)
T KOG0292|consen 663 LEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI----R 727 (1202)
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh----h
Confidence 88776654 556899999999999999999999987664 34444557778888887766665533 2
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
.|... ....-.-.|+.++-.+++...+.-|-. | .....+|.-++|.++.++....
T Consensus 728 ~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--y----lta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 728 NDATG---QFQNALYLGDVKERVKILENGGQLPLA--Y----LTAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--H----HHHhhcCcHHHHHHHHHhhccc
Confidence 22221 111223468899999999988754421 1 1223568888999998888773
No 437
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=48.45 E-value=2.9e+02 Score=27.53 Aligned_cols=90 Identities=8% Similarity=-0.029 Sum_probs=42.7
Q ss_pred HHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHH
Q 037404 171 AKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWST 250 (605)
Q Consensus 171 a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 250 (605)
+..+.+-+..++.......+.++.+.+..+-.-.+...+..++.......+.++...+. +-...+...+..++..+-..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~ 166 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAA 166 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHH
Confidence 44555555555555666666666666665554444444444444444444444444331 11222222233444444445
Q ss_pred HHHHHHhcCCH
Q 037404 251 MVWGYSKDGDM 261 (605)
Q Consensus 251 l~~~~~~~~~~ 261 (605)
-+.++...++.
T Consensus 167 A~raLG~l~~~ 177 (410)
T TIGR02270 167 ALRALGELPRR 177 (410)
T ss_pred HHHHHHhhccc
Confidence 55555544443
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.42 E-value=1.2e+02 Score=23.26 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHh
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQE 108 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 108 (605)
.-|..|+.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3477888888888888888888888766
No 439
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.41 E-value=2.3e+02 Score=26.37 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSME 439 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 439 (605)
++...+.|...|.+.+|..+-++....+ +.+...+-.++..+...|+--.+.+.++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556777777777777777766642 3355556667777777777666655555543
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.11 E-value=50 Score=20.83 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=20.1
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHH
Q 037404 90 CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLK 123 (605)
Q Consensus 90 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 123 (605)
..+.|-..++..++++|.+.|+..+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455556666666666666666666555555543
No 441
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.07 E-value=43 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCC
Q 037404 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKG 290 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (605)
..+.+++.++++.++.+|+.+|..+..++...|
T Consensus 43 ~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~ 75 (84)
T cd08326 43 GSRRDQARQLLIDLETRGKQAFPAFLSALRETG 75 (84)
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 334445555555555555555544444444443
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.53 E-value=70 Score=20.17 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
..+.|-.+++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456667777777788877777777776666554
No 443
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=46.56 E-value=8e+02 Score=32.10 Aligned_cols=112 Identities=15% Similarity=0.060 Sum_probs=59.3
Q ss_pred hCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC-HHHHHHHHHHHHHhC----CCCCcchhhHHHHHHHhcCCC
Q 037404 92 QNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW-FHLVQMIHALIYKCG----YFGDIFVPNSLIDSYSKCGVV 166 (605)
Q Consensus 92 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 166 (605)
+.|.-..++..|-++...-.+ -...-..|+....+... +-.+..+++...... ..++.....++...|....
T Consensus 2392 q~~~~pnvln~~v~s~~~~~~-~~~lpp~Li~yl~kt~~~wh~~I~lLE~~~~~~~~~~~~~~~~~~dsl~elY~~L~-- 2468 (3550)
T KOG0889|consen 2392 QQGCRPNVLNALVESLVKIVP-PIELPPHLIKYLGKTYNLWHTSIRLLEDHQSNKEMENTKGDESCLDSLAELYRSLN-- 2468 (3550)
T ss_pred hhccchhHHHHHHHHHHhhcc-CCCCCHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhh--
Confidence 344555666655555544222 22222344444443333 566666665544322 2334455556666666555
Q ss_pred ChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhc
Q 037404 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEM 209 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 209 (605)
+.|.-.-++++-. ...=+...-.|.+.|.+++|..+|++.
T Consensus 2469 E~Dm~~Glwrrr~---~~~eT~~a~s~eQ~G~~e~AQ~lyeka 2508 (3550)
T KOG0889|consen 2469 EEDMFYGLWRRRA---KFPETMVALSYEQLGFWEEAQSLYEKA 2508 (3550)
T ss_pred HHHHHHHHHHHhh---ccHHHHHHHHHHHhhhHHHHhhHHHHH
Confidence 4444444444321 223344455677889999999988877
No 444
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=46.42 E-value=2.6e+02 Score=26.29 Aligned_cols=73 Identities=15% Similarity=0.327 Sum_probs=50.8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh----------hcCCHHH
Q 037404 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG----------RSGRLKE 466 (605)
Q Consensus 397 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~ 466 (605)
.++|+.|...++.|.-.+|..+.-.+.+.=.+...+.+|+.+..+ | .-|..|+..|| -.|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD----~--~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD----P--QRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC----h--hhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467788888888898888888877777777888888888888763 2 22444444443 2467777
Q ss_pred HHHHHHhCC
Q 037404 467 ALRLVQSMP 475 (605)
Q Consensus 467 A~~~~~~~~ 475 (605)
-+++++.-+
T Consensus 337 nmkLLQ~yp 345 (370)
T KOG4567|consen 337 NMKLLQNYP 345 (370)
T ss_pred HHHHHhcCC
Confidence 777777654
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=45.91 E-value=26 Score=23.61 Aligned_cols=14 Identities=7% Similarity=0.233 Sum_probs=4.8
Q ss_pred HHhcCChHHHHHHH
Q 037404 524 FAATGDWNKVANVR 537 (605)
Q Consensus 524 ~~~~g~~~~A~~~~ 537 (605)
|...|++++|.+++
T Consensus 33 llqlg~~~~a~eYi 46 (62)
T PF14689_consen 33 LLQLGKYEEAKEYI 46 (62)
T ss_dssp HHHTT-HHHHHHHH
T ss_pred HHHCCCHHHHHHHH
Confidence 33333333333333
No 446
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=45.17 E-value=57 Score=19.40 Aligned_cols=28 Identities=11% Similarity=0.172 Sum_probs=22.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+|..|+.+-...+++++|.+=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677888888888888888888887765
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.65 E-value=1.4e+02 Score=29.53 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPA-----------KTLVPWTIIISGYAEKGMAKEAARLYDQME 303 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 303 (605)
+...|++.++-.||+..|+++++.+.- -.+.++..+.-+|...+++.+|.+.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777888888887776531 122236667777788888888888887764
No 448
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.17 E-value=2.4e+02 Score=25.32 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCC--CcchHHHHHHHHHcCCCh
Q 037404 153 PNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER--DAVSWNTILDGYAKAGEM 230 (605)
Q Consensus 153 ~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ll~~~~~~~~~ 230 (605)
+..+++++......+++.|.+.+-...-. ..-...++.++...|+.+.|+.+++....+ +......++.. ..++.+
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~ps~~-~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v 156 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHPSLI-PWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLV 156 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCCCCC-cccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCH
Q ss_pred HHHHHHHHhCCCCC-hhHHHHHHHHHH----hcCCHHHHHHH
Q 037404 231 NLAFELFEKIPHRN-IVSWSTMVWGYS----KDGDMEMAKLL 267 (605)
Q Consensus 231 ~~a~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~a~~~ 267 (605)
.+|..+-+...+.. ...+..++..+. +.+..++-..+
T Consensus 157 ~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 157 TEAFSFQRSYPDELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHHHhCchhhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 449
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=43.59 E-value=4e+02 Score=29.73 Aligned_cols=46 Identities=13% Similarity=0.078 Sum_probs=21.1
Q ss_pred cCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 037404 226 KAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRM 271 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 271 (605)
..|+.+-+.-+++.....+...-...+...+..|+.+-+..+++.-
T Consensus 600 ~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~G 645 (823)
T PLN03192 600 SAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQG 645 (823)
T ss_pred HhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCC
Confidence 3444444444443322222222223445555666666666666543
No 450
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=43.31 E-value=35 Score=31.49 Aligned_cols=56 Identities=16% Similarity=0.253 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 460 RSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.|+.++|..+|+.+ ...|+ +..+..+.......++.-+|-++|-+++.+.|.+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 556666666666554 33333 334444444444445666666666666666665544
No 451
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=43.25 E-value=3.4e+02 Score=27.93 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC--Chh---HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037404 350 NALVDMYAKCGSLDNAMSVFNGMTKK--DLV---SWNAMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 350 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
..++.-|.+.+++++|..++..|.=. ... +.+.+.+.+.+..--++.+..++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677888889999999888887621 222 233334444444334444444444443
No 452
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=42.93 E-value=1.7e+02 Score=25.55 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH-HHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML-SNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..++..|...|+++.|.+.|.-+++..+.|....-.+ +.++.+.+.-....+.++.+..
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
Confidence 445666777777777777777777777665554433333 3555666655555466666644
No 453
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=42.80 E-value=5.2e+02 Score=28.83 Aligned_cols=50 Identities=18% Similarity=0.129 Sum_probs=21.4
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCChhH--HHHHHHHHHhcCCHHHHHHHHhh
Q 037404 221 LDGYAKAGEMNLAFELFEKIPHRNIVS--WSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 221 l~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
+...+..|+.+-+..+++....++... -.+-+...+..|+.+-+.-+++.
T Consensus 626 L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~ 677 (823)
T PLN03192 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMN 677 (823)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHc
Confidence 444455555555555555443322110 01122233445555555555543
No 454
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=42.53 E-value=60 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=12.6
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
..++.++...|++++|.++++.+..
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3345555555555555555555543
No 455
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=42.16 E-value=3.4e+02 Score=26.50 Aligned_cols=195 Identities=9% Similarity=0.024 Sum_probs=111.8
Q ss_pred cCChHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-c---c
Q 037404 359 CGSLDNAMSVFNGMTK-----K----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT-H---A 425 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~---~ 425 (605)
.++.+.|.+-+-...+ . +...+..++..|...++|+.--+.+.-+.+..-. ...+...+++-+. . .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~Mvq~~~~y~~~~ 103 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQSMVQQAMTYIDGT 103 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHhccCC
Confidence 5677777665544432 1 3345666777788888888766655554432111 1222333332211 1 1
Q ss_pred CCHHHHHHHHHHh---HHhhCCCC---chHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC------CHH--HHHHHHHHHH
Q 037404 426 GFIDKGVQYFYSM---ERDYGILP---QVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP------NAI--IWGTLLGACR 491 (605)
Q Consensus 426 g~~~~a~~~~~~~---~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p------~~~--~~~~l~~~~~ 491 (605)
.+.+--+.+.+.+ .+ ..+-. -...-..|...+-.+|++++|..++.+.+++. ... ...-=++.|.
T Consensus 104 ~d~~~k~~li~tLr~Vte-gkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG 182 (439)
T KOG1498|consen 104 PDLETKIKLIETLRTVTE-GKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCL 182 (439)
T ss_pred CCchhHHHHHHHHHHhhc-CceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1222222222222 22 01111 12233456777889999999999999885321 111 1112246677
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC-------chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDP-------GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVE 555 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 555 (605)
..+|+-.|.-+-+++....-+.+ ..|..++......+.+=++-..|+.+.+.|........|..
T Consensus 183 ~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~ 253 (439)
T KOG1498|consen 183 LRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIE 253 (439)
T ss_pred HhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhh
Confidence 88999999888888877643333 34777888888888999999999999887654443334443
No 456
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.20 E-value=4.1e+02 Score=27.19 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhh------cC-CCCchHHHHHHHHHhcCC-hHHHHHHHHHHHhCC
Q 037404 477 EPNAIIWGTLLGAC--RKHNAVELAEEVLDCLIRL------KG-SDPGNYTMLSNIFAATGD-WNKVANVRLQMKKTR 544 (605)
Q Consensus 477 ~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 544 (605)
.+|...+..++.++ .+.|+...|..++....+. ++ --|.+++.++-.|...|. .+++..++.++.+.+
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 56677666666554 4679999999999888743 11 246789999999999988 999999999999853
No 457
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=41.17 E-value=1.8e+02 Score=23.85 Aligned_cols=62 Identities=11% Similarity=0.131 Sum_probs=37.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 298 LYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
+...+.+.|++++..- ..++..+...++.-.|.++++.+.+.+...+..+...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344556666655433 3455556666666778888888887776666655555555565555
No 458
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=40.88 E-value=66 Score=29.93 Aligned_cols=71 Identities=6% Similarity=0.023 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH-HHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM-LSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 476 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
...|+..|...+.--.+.|.+.+.-.++.++++.+|.+.+.|.. -..-|...++++.++.++.+....+.+
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34567777776666667788999999999999999999998876 555678889999999999887776543
No 459
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.63 E-value=1.1e+02 Score=23.02 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=12.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.|.+.|+.+.|.+-|+.=..+.|.+.
T Consensus 81 Lys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 81 LYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred HHhhcCChHHHHHHHHHhhhhCccch
Confidence 34444555555555555444445443
No 460
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.47 E-value=2.7e+02 Score=24.85 Aligned_cols=113 Identities=15% Similarity=0.136 Sum_probs=62.7
Q ss_pred CCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC---chHHHH--HHHHHhhhcCCHHHHHHHHHhC-C--CCCC
Q 037404 408 FGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP---QVEHYG--CMIDLLGRSGRLKEALRLVQSM-P--VEPN 479 (605)
Q Consensus 408 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~--~l~~~~~~~g~~~~A~~~~~~~-~--~~p~ 479 (605)
+.+...-++.|+--|.-...+.+|-..|..- .++.| +...++ .-|......|++++|.+.+... + +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 4566666777766666555566665555443 35554 233332 3456678888888888888877 1 2333
Q ss_pred HHHHHHHH----HHHHhcCCHHHHHHHHHHHHhhc-CCCCchHHHHHHH
Q 037404 480 AIIWGTLL----GACRKHNAVELAEEVLDCLIRLK-GSDPGNYTMLSNI 523 (605)
Q Consensus 480 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 523 (605)
...+-.+. --..+.|..++|+++.+.=+... +.++..+..+=++
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~ 147 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERT 147 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHH
Confidence 32222222 12346777888888877644432 3334444444333
No 461
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=40.30 E-value=81 Score=29.76 Aligned_cols=86 Identities=17% Similarity=0.084 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhC---CCCCCcccHHHHH--HHhhccCCHHHHHHHHHHHHH-----hCCCCCcc-h
Q 037404 84 NTLIRACVQNSLNAQAFRVFLDMQEK---GVFTDNFTYPFLL--KACNGKNWFHLVQMIHALIYK-----CGYFGDIF-V 152 (605)
Q Consensus 84 ~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~-~ 152 (605)
..++...-+.++.++|++.++++.+. --.|+...|.... +.+...||+.++++++++..+ .|+++++. .
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 34454555555777777777776542 1234555444333 334566777777777777665 45555443 2
Q ss_pred hhHHHHHHH-hcCCCChHHH
Q 037404 153 PNSLIDSYS-KCGVVGVSLA 171 (605)
Q Consensus 153 ~~~l~~~~~-~~g~~~~~~a 171 (605)
|..+-.-|. ..| ++...
T Consensus 159 fY~lssqYyk~~~--d~a~y 176 (380)
T KOG2908|consen 159 FYSLSSQYYKKIG--DFASY 176 (380)
T ss_pred HHHHHHHHHHHHH--hHHHH
Confidence 333433333 334 54443
No 462
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.09 E-value=6.2e+02 Score=28.92 Aligned_cols=57 Identities=7% Similarity=-0.003 Sum_probs=27.4
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQS 473 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (605)
|..+++.+.+.+-.+.+.++-..+++ ..+++ ..+++++.+.....|.+-+|.+.+-.
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe--~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~ 1046 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIE--NLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR 1046 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc
Confidence 44455555555555555555555544 22222 22344444455555555555554443
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.98 E-value=1.1e+02 Score=26.15 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=15.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
..|.+.|.+++|.+++++..+ +|++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~ 146 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS-DPESQKL 146 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc-CCCchhH
Confidence 445555666666666655555 4444443
No 464
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=38.94 E-value=3.1e+02 Score=25.16 Aligned_cols=72 Identities=7% Similarity=0.017 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCc
Q 037404 479 NAIIWGTLLGACRKHNAVE-LAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSG 550 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 550 (605)
|-.+|..--......|++. .-+++.+.++..+..+..+|..--+++..-+.++.-+.+-.++++..+++++.
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 4444444333333444544 55566666666666666666666666666666777777777776666666554
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.67 E-value=63 Score=26.52 Aligned_cols=52 Identities=12% Similarity=0.100 Sum_probs=36.5
Q ss_pred CCcchhhHHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCC
Q 037404 11 FSKRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQ 64 (605)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 64 (605)
..|++. .++.+|...+....|.++|+.+.+.+...++.|.-.-++.+...|=
T Consensus 19 ~T~qR~--~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 19 LTPQRL--AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred cCHHHH--HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 455555 6777777776667788888888887776666666666676766663
No 466
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.53 E-value=2e+02 Score=26.90 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHcCChHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~ 397 (605)
...|..++.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 346777777777777766443
No 467
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=38.41 E-value=1.2e+02 Score=22.08 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=28.6
Q ss_pred CcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHH
Q 037404 213 DAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMA 264 (605)
Q Consensus 213 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 264 (605)
+..|....-..-+...+.+++.++++.+...+..+|....+++-..|...-|
T Consensus 29 ~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 29 GVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3333333333334445566666666666666666666666666665554433
No 468
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.15 E-value=2.6e+02 Score=26.59 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=43.4
Q ss_pred HHHHHhcCChHHHHHHHhcCC-------CCChhHH--HHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH-HHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMT-------KKDLVSW--NAMLYGLAMHGQGEKALGLFSRMKD-----EGFGPDKYT-FVG 417 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~-~~~ 417 (605)
+...-+.++.++|.++++++. .|+.+.| ..+...+...|+..++.+++.+..+ .|++|+..+ |..
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 333444556666666666554 3444433 3445566677888888888777766 566765543 444
Q ss_pred HHHH-hcccCCHH
Q 037404 418 VLCA-CTHAGFID 429 (605)
Q Consensus 418 ll~~-~~~~g~~~ 429 (605)
+-.- |-..|++.
T Consensus 162 lssqYyk~~~d~a 174 (380)
T KOG2908|consen 162 LSSQYYKKIGDFA 174 (380)
T ss_pred HHHHHHHHHHhHH
Confidence 4333 33344443
No 469
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.09 E-value=3e+02 Score=24.75 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=66.6
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHH
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 431 (605)
-+..|...-++.-|-...+++.+|=.. .+-+--|.+..+..---++.+-....+++-+......++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 344455544554444444444433110 111122333333332333333334445555555555444 4567788777
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
...++.....+|.... ..+|+-. ..|.+.....++..|.. +++++|.+.+.++.+..-
T Consensus 212 lNnLQst~~g~g~Vn~--------------------enVfKv~-d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgy 269 (333)
T KOG0991|consen 212 LNNLQSTVNGFGLVNQ--------------------ENVFKVC-DEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGY 269 (333)
T ss_pred HHHHHHHhccccccch--------------------hhhhhcc-CCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCC
Confidence 7777776653222211 1112222 24666666666666643 567778777777777653
Q ss_pred C
Q 037404 512 S 512 (605)
Q Consensus 512 ~ 512 (605)
+
T Consensus 270 s 270 (333)
T KOG0991|consen 270 S 270 (333)
T ss_pred C
Confidence 3
No 470
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.97 E-value=3.6e+02 Score=25.61 Aligned_cols=113 Identities=16% Similarity=0.121 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHH-HHHHhcCCHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPNAIIWGTLL-GACRKHNAVELA 499 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~-~~~~~~g~~~~A 499 (605)
.++-.+..+.+.+..|-.--...+......|++.|+.+.|++.+.+. +.+.|...+..-+ -.|..+.-+.+-
T Consensus 84 i~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ 163 (393)
T KOG0687|consen 84 IKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTES 163 (393)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHH
Confidence 33333444444443333334556677788899999999999988754 4555655443322 223333333333
Q ss_pred HHHHHHHHhhcCC----C-CchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 500 EEVLDCLIRLKGS----D-PGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 500 ~~~~~~~~~~~p~----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++..+.+.+...+ | -.+|.-+ .+....++.+|..++-....
T Consensus 164 iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 164 IEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence 3333333333222 1 1222222 33455788888888876654
No 471
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=37.85 E-value=1.7e+02 Score=29.85 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=50.9
Q ss_pred HHHHHHHhccCChhHHHHHhcccC--CCCccc---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 037404 53 PKLISSLALCRQMGLAIKVFNDIQ--DPDVHL---YNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127 (605)
Q Consensus 53 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 127 (605)
..++.-|.+.+++++|..++..|. .-.... .+.+.+.+.+..--.+....++.+...=..|....-.....-|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 467788999999999999998886 122222 344555666665445555666666554333333322222222221
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 037404 128 KNWFHLVQMIHALIYKCG 145 (605)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~ 145 (605)
.=.+-|++.|..+++.+
T Consensus 492 -~V~~~aRRfFhhLLR~~ 508 (545)
T PF11768_consen 492 -PVSDLARRFFHHLLRYQ 508 (545)
T ss_pred -HHHHHHHHHHHHHHHhh
Confidence 22334556666665543
No 472
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.35 E-value=68 Score=23.68 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHhhCCCCCcccHHHHHHHHHh
Q 037404 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAE 288 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 288 (605)
..+.+++.++++.++.+|+.+|..+..++..
T Consensus 47 ~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 47 PTSFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred CCcHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 3445555555555555555555555555543
No 473
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.25 E-value=76 Score=29.53 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
.-|+..|..-.+.||+++|+.++++..+.|+.--..+|-
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 356677888888888888888888888888654444443
No 474
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=36.86 E-value=5.7e+02 Score=27.54 Aligned_cols=189 Identities=15% Similarity=0.215 Sum_probs=100.7
Q ss_pred HHHHHHHHcCCCC---ChhHHHHHHHHHHhcCChHHHHHHHhcCCC-CCh----------hHHHHHHHHHHHcCChHHHH
Q 037404 332 KVHASINKYRFKC---NTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDL----------VSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 332 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~~~A~ 397 (605)
.++.+|...--.| ...+...++-.|....+++...++.+.+.. ||. ..|.-.+.---+-|+-++|+
T Consensus 184 ~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL 263 (1226)
T KOG4279|consen 184 DYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKAL 263 (1226)
T ss_pred HHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHH
Confidence 4455555433233 344555666667777777777777766552 111 11222222223457778888
Q ss_pred HHHHHHHHC--CCCCCHHH-----HHHH--HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC-HHHH
Q 037404 398 GLFSRMKDE--GFGPDKYT-----FVGV--LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR-LKEA 467 (605)
Q Consensus 398 ~~~~~m~~~--g~~p~~~~-----~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 467 (605)
...-.|.+. .+.||... |.-+ -..|...+..+.|.++|++. +.+.|+...--.+...+...|. ++..
T Consensus 264 ~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~Wyrka---FeveP~~~sGIN~atLL~aaG~~Fens 340 (1226)
T KOG4279|consen 264 NTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKA---FEVEPLEYSGINLATLLRAAGEHFENS 340 (1226)
T ss_pred HHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHH---hccCchhhccccHHHHHHHhhhhccch
Confidence 877777653 24566543 2222 12355666777888888887 4466765544444444444443 2222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 468 LRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 468 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+ ++.++ .. |-..+.+.|..+.-.++++-+. ...+-.-+.++..|++.-+.|.+..
T Consensus 341 ~E-lq~Ig-----mk---Ln~LlgrKG~leklq~YWdV~~------------y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 341 LE-LQQIG-----MK---LNSLLGRKGALEKLQEYWDVAT------------YFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred HH-HHHHH-----HH---HHHHhhccchHHHHHHHHhHHH------------hhhhhhhccCHHHHHHHHHHHhccC
Confidence 11 11111 11 2233456677776666665322 2223344677888888888887764
No 475
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.77 E-value=1.3e+02 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 037404 483 WGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~ 503 (605)
...+..++.+.|+.+..+.+.
T Consensus 221 l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 221 LWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 333444444455555444443
No 476
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=36.74 E-value=3.6e+02 Score=25.19 Aligned_cols=113 Identities=10% Similarity=0.096 Sum_probs=64.9
Q ss_pred hHHHHHHHhcCCC-----CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 037404 362 LDNAMSVFNGMTK-----KDLVSWNAMLYGLAMHG--QGEKALGLFSRMKD-EGFGPDKYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 362 ~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
+-+|+.+|+.... .|......+++...... ....-.++.+-+.. .|-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4456666663222 24444445555444411 12222233333332 2345666667777777777777777777
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
++.......+...|...|..+++.....|+..-..+++++-
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~G 264 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDG 264 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCC
Confidence 77776652244556777777777777777777777777654
No 477
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.55 E-value=4.4e+02 Score=26.25 Aligned_cols=375 Identities=11% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCC--
Q 037404 53 PKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNW-- 130 (605)
Q Consensus 53 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-- 130 (605)
|-.+..|...|+..+|-++.+++.. +.......-+++.-.+.-..|..+.-.+...+...+-.+-..+.+++.+.++
T Consensus 218 n~~l~eyv~~getrea~rciR~L~v-sffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGV-SFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCC-CchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred ------HHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHH
Q 037404 131 ------FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARR 204 (605)
Q Consensus 131 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 204 (605)
...|...++.+.-..+..+-.--+++-..-...| +.+. .+.|++ ....+|+-|...|+..+..+
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g--~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~ 366 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPG--DSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIR 366 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCC--cchH-HHHHHH-------hhHHHHHHHHhcCChHHHHH
Q ss_pred HHhhc--CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCccc----
Q 037404 205 LFDEM--PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVP---- 278 (605)
Q Consensus 205 ~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 278 (605)
.++.+ .+-++.....+|.......+.++-..-. .|-..+...-..+....-|..+.+.-..+
T Consensus 367 ~L~DLn~~E~~~~f~k~lITLAldrK~~ekEMasv------------llS~L~~e~fsteDv~~~F~mLLesaedtALD~ 434 (645)
T KOG0403|consen 367 SLRDLNLPEYNPGFLKLLITLALDRKNSEKEMASV------------LLSDLHGEVFSTEDVEKGFDMLLESAEDTALDI 434 (645)
T ss_pred HHHHcCCccccchHHHHHHHHHhccchhHHHHHHH------------HHHHhhcccCCHHHHHHHHHHHHhcchhhhccc
Q ss_pred ---HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhH----HHH
Q 037404 279 ---WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV----CNA 351 (605)
Q Consensus 279 ---~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~ 351 (605)
-+.+...+++.=--+--....-+-....++|....-.++=.+-.-..-....+++++-.-..|....... ...
T Consensus 435 p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~kdkI~~ 514 (645)
T KOG0403|consen 435 PRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDAKDKIDM 514 (645)
T ss_pred cccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHHHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCH
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFI 428 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 428 (605)
|+.-|...|+..+|.++++++.-| ....+.+++.+.-+.|+-..-+.+++...+.| ++.......-+
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----------lIT~nQMtkGf 584 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----------LITTNQMTKGF 584 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----------ceeHHHhhhhh
Q ss_pred HHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC
Q 037404 429 DKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG 462 (605)
Q Consensus 429 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 462 (605)
.+...-+..+.- .++.....++..+.-+...|
T Consensus 585 ~RV~dsl~DlsL--DvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 585 ERVYDSLPDLSL--DVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred hhhhccCccccc--CCCcHHHHHHHHHHHHHHcC
No 478
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.52 E-value=1.3e+02 Score=25.78 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 037404 283 ISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3455566666666666666654
No 479
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=36.38 E-value=4.2e+02 Score=26.07 Aligned_cols=135 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC-------chHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP-------QVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN 479 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~ 479 (605)
+...+..++--...+.++++|..+-+.......... ...+|-.+-..|-..|+...-...+... ..+.|
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd 204 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHD 204 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCc
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHH----hhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 480 ----AIIWGTLLGACRKHNAVELAEEVLDCLI----RLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 480 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
....|.+++.|...+.++.|..+..+.. ..+..-...++.++.+..-+++|..|.+.+-++..+-+
T Consensus 205 ~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 205 EEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
No 480
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.92 E-value=78 Score=29.44 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (605)
|+.-|....+.||+++|+.++++..+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 677777778888888888888888877765444443
No 481
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.90 E-value=1.6e+02 Score=29.22 Aligned_cols=109 Identities=17% Similarity=0.176 Sum_probs=56.1
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc---CC
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS---GR 463 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 463 (605)
+...|++.+|+..|+.+... ..+.......+.+++.+++....+ + +....++.-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~~----------i~l~vv~~~~E~~e~~eli~icrE-Y-------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILHS----------IPLLVVESREEEDEAKELIEICRE-Y-------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHHH----------HHC--BSSCHHHHHHHHHHHHHHH-H-------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeecCHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHhccccc
Confidence 35678888888888876642 111122222334455555554443 1 111111111111 11
Q ss_pred HH------HHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 464 LK------EALRLVQSMPVEPNAI--IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 464 ~~------~A~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
.+ +-..+|...++.|... ++..-+..+.+.+++..|..+.++++++.|..
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 11 2223344445555533 55666777889999999999999999988754
No 482
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.45 E-value=26 Score=27.86 Aligned_cols=34 Identities=12% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHH
Q 037404 23 NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISS 58 (605)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 58 (605)
++.+.|.-.++..+|..|++.|.+||. ++.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 567778889999999999999977764 5566654
No 483
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.35 E-value=3.9e+02 Score=25.29 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=8.3
Q ss_pred hhhcCCHHHHHHHHHhC
Q 037404 458 LGRSGRLKEALRLVQSM 474 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~ 474 (605)
-.+.|+..+|.+.|+.+
T Consensus 285 ARklGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDL 301 (556)
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33445555555555444
No 484
>PRK09857 putative transposase; Provisional
Probab=35.25 E-value=3.1e+02 Score=25.80 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQK 547 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 547 (605)
+..++.-....++.++-.++++...+..|.......+++.-+.+.|.-++++++.++|...|...
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 33444444566777777777777777667667777888888988898888999999999887653
No 485
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=35.07 E-value=73 Score=24.73 Aligned_cols=48 Identities=8% Similarity=0.039 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChh
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 66 (605)
.++.+|...+..-.+.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 566777777777788999999998887778877778888888877544
No 486
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.71 E-value=4.6e+02 Score=25.84 Aligned_cols=58 Identities=21% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMTK------KDLVSWNAMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
.+.-+.+-|..+|+++.|.+.|.+..+ .-+..|..+|..-.-.|+|........+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345555666666666666666655331 1123333344444444555555555554443
No 487
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=34.47 E-value=3.9e+02 Score=24.91 Aligned_cols=24 Identities=8% Similarity=0.008 Sum_probs=11.2
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
.+..+..-|++.++.+.+.++..+
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444445555555544444443
No 488
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=34.27 E-value=3.1e+02 Score=23.78 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=13.9
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 037404 524 FAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~ 542 (605)
..+.|++++|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 4566788888888777765
No 489
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.23 E-value=4.2e+02 Score=25.32 Aligned_cols=161 Identities=11% Similarity=0.077 Sum_probs=99.8
Q ss_pred CCChhHHHHHHHHHHHcCC------------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 374 KKDLVSWNAMLYGLAMHGQ------------GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
+.|+.+|-.++..--..-. .+.-+.++++..+++ +-+......++..+.+..+.+...+-++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~- 93 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF- 93 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-
Confidence 4478888888875433211 355667888888873 34556677788888888899999999999987
Q ss_pred hCCCCchHHHHHHHHHhhh---cCCHHHHHHHHHhC---------CC------CCC--HH---HHHHHHHHHHhcCCHHH
Q 037404 442 YGILPQVEHYGCMIDLLGR---SGRLKEALRLVQSM---------PV------EPN--AI---IWGTLLGACRKHNAVEL 498 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~---------~~------~p~--~~---~~~~l~~~~~~~g~~~~ 498 (605)
..+-+...|..++..... .-.+++..++|.+. +. .++ .. ++..+...+.+.|..+.
T Consensus 94 -~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~ 172 (321)
T PF08424_consen 94 -KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTER 172 (321)
T ss_pred -HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHH
Confidence 344467788777776544 23455666665544 11 011 11 12222333457899999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
|..+++.+++.+--.|.....- ...+....|+..-+.++
T Consensus 173 Ava~~Qa~lE~n~~~P~~~~~~--------~~~~~~~~fe~FWeS~v 211 (321)
T PF08424_consen 173 AVALWQALLEFNFFRPESLSSS--------SFSERLESFEEFWESEV 211 (321)
T ss_pred HHHHHHHHHHHHcCCccccccc--------cHHHHHHHHHHHhCcCC
Confidence 9999999999753323211111 11156666777766654
No 490
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.19 E-value=96 Score=21.21 Aligned_cols=50 Identities=16% Similarity=0.032 Sum_probs=32.9
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 374 KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 374 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
.+....++.++..++...-.++++..+.++...|. .+..+|..-++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34456677777777777778888888888888773 455666555555443
No 491
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=33.53 E-value=4.8e+02 Score=25.72 Aligned_cols=54 Identities=9% Similarity=0.005 Sum_probs=31.4
Q ss_pred HHhCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCchHHHHHHHHHHHHc
Q 037404 286 YAEKGMAKEAARLYDQMEEAGLKPDDG--TLISILAACA--ESGLLGLGMKVHASINKY 340 (605)
Q Consensus 286 ~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 340 (605)
+...+++..|.++|..+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567777788877777765 444443 2333444433 345566777766665543
No 492
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.52 E-value=2.4e+02 Score=29.73 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHHHcCCCCCH
Q 037404 289 KGMAKEAARLYDQMEEAGLKPDD 311 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~ 311 (605)
.+++.+|.+.+-.+...+..|..
T Consensus 508 ~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 508 EGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHHHHHHCCCCCcHH
Confidence 35555555555555554444443
No 493
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.38 E-value=1e+02 Score=20.79 Aligned_cols=48 Identities=6% Similarity=-0.113 Sum_probs=24.6
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHh-----hccCCHHHHHHH
Q 037404 90 CVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKAC-----NGKNWFHLVQMI 137 (605)
Q Consensus 90 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~ 137 (605)
+...|++-+|-++++.+-.....+....+..+|+.+ .+.|+...|..+
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 445677777777777765433333444555555443 244555544443
No 494
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.33 E-value=4.4e+02 Score=25.21 Aligned_cols=120 Identities=15% Similarity=0.109 Sum_probs=78.5
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc------ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACT------HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLK 465 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (605)
-++++..++.+....+ .|.++.....|.++- ..-+|.....+|+.+.. ..|++.+-.+-..+..+..-.+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCCCeEeehHHHHHHHhhhHH
Confidence 3578888888888877 488887777776543 23467777777777754 4455443333344455555567
Q ss_pred HHHHHHHhCCCCCC---H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 466 EALRLVQSMPVEPN---A-IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 466 ~A~~~~~~~~~~p~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.++...+.++.+|- . ..+..-...+.+.|+.++|...|++++.+.++...
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ae 400 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAE 400 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHH
Confidence 77777777643322 1 22333456678889999999999999988766543
No 495
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.49 E-value=4.4e+02 Score=24.99 Aligned_cols=20 Identities=15% Similarity=0.130 Sum_probs=14.1
Q ss_pred HHHHHHHHHHhhcCCCCchH
Q 037404 498 LAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 498 ~A~~~~~~~~~~~p~~~~~~ 517 (605)
.|.+...++.+.+|.-|..+
T Consensus 380 ~AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 380 NAVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHHhhcCCCCcHHH
Confidence 46777788888888776543
No 496
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.95 E-value=4.5e+02 Score=24.92 Aligned_cols=112 Identities=13% Similarity=-0.040 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhHHhhCC---CCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037404 428 IDKGVQYFYSMERDYGI---LPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLD 504 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 504 (605)
.+.|.+.|+.......- ..++.....+.....+.|+.+.-..+++.....++...-..++.+.....+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56777888887762112 345566666777777888766655566555445677777788888888888888888888
Q ss_pred HHHhhc-CCCCchHHHHHHHHHhcCCh--HHHHHHHHHH
Q 037404 505 CLIRLK-GSDPGNYTMLSNIFAATGDW--NKVANVRLQM 540 (605)
Q Consensus 505 ~~~~~~-p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~ 540 (605)
.++... -........+. .+...+.. +.+.++++.-
T Consensus 226 ~~l~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~n 263 (324)
T PF11838_consen 226 LLLSNDKVRSQDIRYVLA-GLASSNPVGRDLAWEFFKEN 263 (324)
T ss_dssp HHHCTSTS-TTTHHHHHH-HHH-CSTTCHHHHHHHHHHC
T ss_pred HHcCCcccccHHHHHHHH-HHhcCChhhHHHHHHHHHHH
Confidence 888843 22233333333 33323333 5555555443
No 497
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.77 E-value=1.7e+02 Score=21.32 Aligned_cols=43 Identities=12% Similarity=0.009 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHH
Q 037404 101 RVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYK 143 (605)
Q Consensus 101 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 143 (605)
++|+-....|+..|+..|..++......-.++...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666677777777777777666555556666666655543
No 498
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=31.20 E-value=5.8e+02 Score=25.98 Aligned_cols=433 Identities=10% Similarity=-0.013 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCC-chHHHHHHHH
Q 037404 30 LNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSL-NAQAFRVFLD 105 (605)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~ 105 (605)
+.....+++.... .+..|+..|...+..+-+.+.+.+...+|..|. +.++..|-.-.......+. ++.|..+|..
T Consensus 87 ~~rIv~lyr~at~-rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 87 PNRIVFLYRRATN-RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Q ss_pred HHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCC--e
Q 037404 106 MQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERD--I 183 (605)
Q Consensus 106 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~--~ 183 (605)
-++.... ++..+...++. .+..+..+...-...|...+..+-...-.-..... .......+--.++..+ .
T Consensus 166 gLR~npd-sp~Lw~eyfrm-----EL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~--~~~s~~~~~~~~k~~e~~~ 237 (568)
T KOG2396|consen 166 GLRFNPD-SPKLWKEYFRM-----ELMYAEKLRNRREELGLDSSDKDEEIERGELAWIN--YANSVDIIKGAVKSVELSV 237 (568)
T ss_pred HhhcCCC-ChHHHHHHHHH-----HHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHh--hccchhhhhcchhhcchHH
Q ss_pred ehHHHHHHHHHhC--------------CChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC--CChhH
Q 037404 184 VSWNSMIAGLVKG--------------GELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--RNIVS 247 (605)
Q Consensus 184 ~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~ 247 (605)
..-.....-+.++ -..+.|.+.++-....+...+...-.......+.+....+|++..+ +....
T Consensus 238 ~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm 317 (568)
T KOG2396|consen 238 AEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESM 317 (568)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC---------CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMP---------AKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISIL 318 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 318 (605)
|+..|..+........-..+...+. ......+......+.......++...-..+...++..+...+..-+
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl 397 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKL 397 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHH
Q ss_pred HHHHcc--CchHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHhcCChHHHHHHHhcCCCCChhHH-HHHHHHHHHcCChH
Q 037404 319 AACAES--GLLGLGMKVHASINKYRFKCNTNVCNALV-DMYAKCGSLDNAMSVFNGMTKKDLVSW-NAMLYGLAMHGQGE 394 (605)
Q Consensus 319 ~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~ 394 (605)
....+. .---.....+..+...-..+....++... ..+.+..-.+.....+..+..++..++ +.++.-+...|-+.
T Consensus 398 ~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~ 477 (568)
T KOG2396|consen 398 QVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYK 477 (568)
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchH
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC--CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAG--FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+|...+..+... .+|+...|..+++.-..+- +..-+..+|+.+...+| .++..|...+..-...|..+.+-.++.
T Consensus 478 ~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ 554 (568)
T KOG2396|consen 478 KARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPENCGQIYW 554 (568)
T ss_pred HHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcccccHHHH
Q ss_pred hC
Q 037404 473 SM 474 (605)
Q Consensus 473 ~~ 474 (605)
++
T Consensus 555 ra 556 (568)
T KOG2396|consen 555 RA 556 (568)
T ss_pred HH
No 499
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=31.16 E-value=96 Score=23.83 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 037404 18 EEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSL 59 (605)
Q Consensus 18 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 59 (605)
.+++.-|.+|...++|+++.+.|.+.| ..+....+.|-..+
T Consensus 65 PtViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L 105 (128)
T PF09868_consen 65 PTVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSIL 105 (128)
T ss_pred ChHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 367888889999999999999998888 35555444444433
No 500
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.00 E-value=3.8e+02 Score=23.79 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhcCC-------HHHHHHHHHhC------CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 450 HYGCMIDLLGRSGR-------LKEALRLVQSM------PVE-PN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 450 ~~~~l~~~~~~~g~-------~~~A~~~~~~~------~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
.+..+...|...|+ +..|.+.|.+. +.. -+ ....-.++....+.|+.++|.+.+.+++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34445555655555 33455555444 111 12 2334445566788899999999999988853
Done!