Query 037404
Match_columns 605
No_of_seqs 619 out of 4074
Neff 11.4
Searched_HMMs 29240
Date Mon Mar 25 20:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7.6E-42 2.6E-46 358.9 34.6 476 58-544 62-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-39 1.2E-43 338.7 27.8 472 47-525 82-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.1E-27 2.1E-31 231.4 36.4 336 189-529 39-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.5E-26 8.5E-31 227.0 36.8 349 189-543 5-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.3E-26 4.4E-31 232.4 23.5 182 279-461 29-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 1.3E-25 4.3E-30 225.2 21.8 200 293-493 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 2E-23 6.9E-28 214.5 30.7 387 151-544 7-479 (514)
8 3fp2_A TPR repeat-containing p 99.9 1.2E-22 4.2E-27 209.8 33.9 430 80-544 25-492 (537)
9 2gw1_A Mitochondrial precursor 99.9 9.5E-23 3.3E-27 209.5 30.5 432 81-521 7-490 (514)
10 2y4t_A DNAJ homolog subfamily 99.9 7.6E-22 2.6E-26 199.0 32.0 325 183-543 26-410 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 2.5E-21 8.6E-26 195.2 32.3 297 244-545 25-360 (450)
12 3fp2_A TPR repeat-containing p 99.9 6.9E-21 2.4E-25 196.7 31.8 434 50-519 26-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 6E-20 2E-24 179.0 32.4 292 248-543 6-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 4.5E-19 1.6E-23 172.7 30.0 277 246-528 38-354 (359)
15 3hym_B Cell division cycle pro 99.8 2.2E-18 7.5E-23 165.8 27.9 285 243-530 20-321 (330)
16 3hym_B Cell division cycle pro 99.8 3E-18 1E-22 164.8 28.8 265 274-543 20-299 (330)
17 1xi4_A Clathrin heavy chain; a 99.8 4.4E-16 1.5E-20 165.4 46.9 461 23-539 848-1341(1630)
18 1fch_A Peroxisomal targeting s 99.8 1E-18 3.4E-23 171.1 25.6 282 257-542 37-358 (368)
19 1xi4_A Clathrin heavy chain; a 99.8 6E-16 2.1E-20 164.4 44.1 383 116-538 986-1379(1630)
20 2xm6_A Protein corresponding t 99.8 4.5E-17 1.5E-21 165.6 34.9 347 167-526 58-452 (490)
21 1b89_A Protein (clathrin heavy 99.8 2E-17 6.9E-22 157.7 29.6 374 61-502 15-410 (449)
22 3mkr_A Coatomer subunit epsilo 99.8 4.4E-17 1.5E-21 152.5 29.8 268 256-537 10-288 (291)
23 2xm6_A Protein corresponding t 99.8 4.7E-16 1.6E-20 158.1 38.1 350 181-545 37-434 (490)
24 2ooe_A Cleavage stimulation fa 99.8 3E-16 1E-20 161.2 35.7 404 114-544 12-493 (530)
25 4eqf_A PEX5-related protein; a 99.8 6.4E-18 2.2E-22 165.1 22.0 260 277-540 66-353 (365)
26 1b89_A Protein (clathrin heavy 99.8 1.3E-17 4.4E-22 159.1 21.4 284 162-474 15-308 (449)
27 3cv0_A Peroxisome targeting si 99.8 2.2E-17 7.4E-22 158.5 22.7 259 279-542 24-314 (327)
28 4g1t_A Interferon-induced prot 99.8 4.3E-17 1.5E-21 165.3 26.0 356 185-553 53-469 (472)
29 1fch_A Peroxisomal targeting s 99.8 1.7E-17 5.8E-22 162.3 20.0 258 247-509 66-359 (368)
30 3mkr_A Coatomer subunit epsilo 99.8 4E-17 1.4E-21 152.8 21.5 247 283-544 6-265 (291)
31 2ooe_A Cleavage stimulation fa 99.8 1.9E-15 6.4E-20 155.3 34.8 408 77-512 10-495 (530)
32 4eqf_A PEX5-related protein; a 99.7 1E-16 3.5E-21 156.6 21.4 232 310-544 64-311 (365)
33 3cv0_A Peroxisome targeting si 99.7 1.8E-16 6.1E-21 152.1 17.6 259 248-511 24-317 (327)
34 2pl2_A Hypothetical conserved 99.7 1E-15 3.4E-20 136.9 19.1 196 343-541 2-212 (217)
35 3uq3_A Heat shock protein STI1 99.7 2.9E-15 1E-19 138.2 22.4 217 314-543 8-236 (258)
36 3uq3_A Heat shock protein STI1 99.7 3.4E-15 1.2E-19 137.7 19.5 234 279-523 8-256 (258)
37 4g1t_A Interferon-induced prot 99.7 5.6E-15 1.9E-19 149.7 22.7 376 114-521 50-471 (472)
38 3spa_A Mtrpol, DNA-directed RN 99.7 4.2E-17 1.4E-21 167.9 5.1 147 49-197 127-286 (1134)
39 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5E-19 134.9 20.4 241 288-537 17-269 (275)
40 3u4t_A TPR repeat-containing p 99.6 2.4E-14 8.1E-19 133.3 21.7 243 282-528 9-269 (272)
41 3e4b_A ALGK; tetratricopeptide 99.6 4.2E-14 1.4E-18 141.3 23.0 342 189-545 9-389 (452)
42 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-13 3.7E-18 127.2 21.8 197 346-544 37-239 (252)
43 1ouv_A Conserved hypothetical 99.6 5.8E-13 2E-17 123.9 26.7 221 313-545 8-253 (273)
44 2q7f_A YRRB protein; TPR, prot 99.6 2.6E-14 9.1E-19 130.4 16.9 197 345-544 22-223 (243)
45 2vq2_A PILW, putative fimbrial 99.6 2.1E-13 7E-18 122.7 22.1 197 345-543 7-211 (225)
46 3spa_A Mtrpol, DNA-directed RN 99.6 1.8E-15 6.1E-20 156.0 8.8 125 345-470 126-258 (1134)
47 3e4b_A ALGK; tetratricopeptide 99.6 8.2E-14 2.8E-18 139.2 20.3 311 219-545 8-353 (452)
48 3u4t_A TPR repeat-containing p 99.6 1.6E-13 5.4E-18 127.7 21.0 228 313-544 5-251 (272)
49 2h6f_A Protein farnesyltransfe 99.6 2.3E-13 8E-18 131.6 22.4 244 279-527 100-366 (382)
50 2q7f_A YRRB protein; TPR, prot 99.6 4.7E-14 1.6E-18 128.7 16.7 209 316-528 28-241 (243)
51 2ho1_A Type 4 fimbrial biogene 99.6 5.2E-13 1.8E-17 122.5 23.8 203 313-518 39-247 (252)
52 3vtx_A MAMA; tetratricopeptide 99.6 2.2E-13 7.4E-18 118.4 19.7 166 376-544 4-171 (184)
53 4a1s_A PINS, partner of inscut 99.6 5.7E-14 1.9E-18 139.4 17.2 262 281-543 53-372 (411)
54 2h6f_A Protein farnesyltransfe 99.5 2E-13 6.8E-18 132.0 18.8 227 312-543 98-348 (382)
55 2vq2_A PILW, putative fimbrial 99.5 1.2E-12 4.2E-17 117.6 23.0 205 313-520 10-222 (225)
56 2pl2_A Hypothetical conserved 99.5 4.4E-13 1.5E-17 119.7 19.6 111 391-506 98-211 (217)
57 3sf4_A G-protein-signaling mod 99.5 2.2E-13 7.5E-18 134.8 19.2 129 414-542 189-335 (406)
58 3ro2_A PINS homolog, G-protein 99.5 1.9E-13 6.5E-18 131.3 18.2 261 282-543 11-332 (338)
59 1ouv_A Conserved hypothetical 99.5 2.5E-12 8.5E-17 119.6 25.1 224 277-514 7-256 (273)
60 4abn_A Tetratricopeptide repea 99.5 1.4E-13 4.8E-18 138.5 16.5 209 327-540 84-318 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.5 4.1E-13 1.4E-17 125.0 16.3 218 322-544 16-245 (275)
62 3sf4_A G-protein-signaling mod 99.5 1.4E-13 4.8E-18 136.2 13.5 254 279-532 50-365 (406)
63 4e6h_A MRNA 3'-END-processing 99.5 7.2E-11 2.5E-15 121.9 30.8 218 293-515 326-576 (679)
64 3vtx_A MAMA; tetratricopeptide 99.5 3.1E-12 1.1E-16 111.0 17.1 167 345-514 4-175 (184)
65 2ond_A Cleavage stimulation fa 99.4 4.9E-11 1.7E-15 112.8 26.0 218 293-514 33-275 (308)
66 4a1s_A PINS, partner of inscut 99.4 1.2E-12 4.1E-17 129.8 15.3 199 314-512 129-375 (411)
67 4i17_A Hypothetical protein; T 99.4 6.8E-12 2.3E-16 113.1 18.2 188 345-543 6-209 (228)
68 3ulq_A Response regulator aspa 99.4 6.4E-12 2.2E-16 123.2 18.2 128 414-542 226-367 (383)
69 3ulq_A Response regulator aspa 99.4 3.1E-12 1.1E-16 125.4 16.0 288 224-511 22-370 (383)
70 4gyw_A UDP-N-acetylglucosamine 99.4 6.2E-12 2.1E-16 131.4 18.9 164 376-543 8-174 (723)
71 3as5_A MAMA; tetratricopeptide 99.4 9.5E-12 3.2E-16 107.8 17.2 161 381-544 12-174 (186)
72 3ro2_A PINS homolog, G-protein 99.4 2.6E-12 9E-17 123.3 14.8 234 279-512 46-335 (338)
73 3nf1_A KLC 1, kinesin light ch 99.4 5.9E-13 2E-17 126.4 9.8 234 279-543 30-307 (311)
74 1hz4_A MALT regulatory protein 99.4 2.9E-10 1E-14 110.9 28.8 261 283-543 21-322 (373)
75 2ond_A Cleavage stimulation fa 99.4 4.5E-11 1.6E-15 113.0 22.2 213 328-545 33-272 (308)
76 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4.2E-14 112.7 32.8 427 96-546 48-573 (679)
77 4i17_A Hypothetical protein; T 99.4 4.8E-11 1.6E-15 107.4 19.4 206 309-525 5-225 (228)
78 3as5_A MAMA; tetratricopeptide 99.3 9.2E-11 3.2E-15 101.5 19.6 168 346-516 8-180 (186)
79 3nf1_A KLC 1, kinesin light ch 99.3 4.5E-12 1.5E-16 120.2 11.7 237 245-512 27-310 (311)
80 4abn_A Tetratricopeptide repea 99.3 4.2E-11 1.4E-15 120.4 18.4 179 362-544 84-288 (474)
81 3q15_A PSP28, response regulat 99.3 6.6E-11 2.3E-15 115.7 17.9 222 320-542 110-364 (378)
82 3q15_A PSP28, response regulat 99.3 3.9E-10 1.3E-14 110.2 22.2 227 282-509 107-365 (378)
83 1hz4_A MALT regulatory protein 99.2 7E-10 2.4E-14 108.2 20.6 284 252-543 21-349 (373)
84 3qky_A Outer membrane assembly 99.2 1.4E-09 4.8E-14 100.0 20.1 206 345-590 14-248 (261)
85 1qqe_A Vesicular transport pro 99.2 1.7E-10 5.7E-15 108.1 14.0 188 355-542 46-268 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 2.9E-10 1E-14 105.9 15.6 222 322-543 12-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.2 4.9E-09 1.7E-13 95.9 22.2 174 365-543 85-282 (310)
88 4gyw_A UDP-N-acetylglucosamine 99.2 3.8E-10 1.3E-14 118.0 15.5 163 345-511 8-176 (723)
89 2fo7_A Synthetic consensus TPR 99.1 9.8E-10 3.4E-14 89.2 14.8 128 415-544 4-133 (136)
90 2yhc_A BAMD, UPF0169 lipoprote 99.1 2.3E-09 7.9E-14 96.0 18.1 182 346-546 4-216 (225)
91 3qky_A Outer membrane assembly 99.1 7.6E-10 2.6E-14 101.8 15.3 204 309-533 13-251 (261)
92 1qqe_A Vesicular transport pro 99.1 9.3E-10 3.2E-14 103.0 15.0 218 260-514 32-274 (292)
93 3mv2_B Coatomer subunit epsilo 99.1 6.6E-09 2.3E-13 95.0 19.3 180 330-517 85-290 (310)
94 3qou_A Protein YBBN; thioredox 99.1 2E-09 7E-14 100.3 16.5 177 362-542 102-283 (287)
95 4ga2_A E3 SUMO-protein ligase 99.1 9.4E-11 3.2E-15 97.4 6.4 140 386-529 6-149 (150)
96 3rjv_A Putative SEL1 repeat pr 99.1 1.2E-08 4.1E-13 90.2 20.1 171 365-544 5-198 (212)
97 2pzi_A Probable serine/threoni 99.1 4.6E-10 1.6E-14 118.0 11.8 169 357-529 402-583 (681)
98 2fo7_A Synthetic consensus TPR 99.1 5.8E-09 2E-13 84.5 16.0 132 379-513 3-136 (136)
99 3edt_B KLC 2, kinesin light ch 99.1 2.8E-09 9.7E-14 99.1 15.4 198 312-509 44-281 (283)
100 4ga2_A E3 SUMO-protein ligase 99.1 5.5E-10 1.9E-14 92.7 9.2 123 418-543 3-129 (150)
101 2vsy_A XCC0866; transferase, g 99.0 3.8E-09 1.3E-13 109.2 16.2 160 359-521 2-169 (568)
102 3urz_A Uncharacterized protein 99.0 6.7E-09 2.3E-13 91.6 14.9 130 381-513 58-190 (208)
103 2r5s_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 91.0 12.3 156 383-542 12-172 (176)
104 3gyz_A Chaperone protein IPGC; 99.0 2.3E-09 7.9E-14 88.4 10.7 101 444-544 31-134 (151)
105 2vgx_A Chaperone SYCD; alterna 99.0 2.1E-09 7.2E-14 88.8 10.1 98 447-544 20-119 (148)
106 2ifu_A Gamma-SNAP; membrane fu 98.9 8.7E-09 3E-13 97.2 14.2 218 289-535 4-253 (307)
107 4gco_A Protein STI-1; structur 98.9 1.5E-08 5.2E-13 80.9 13.3 95 449-543 14-110 (126)
108 2ifu_A Gamma-SNAP; membrane fu 98.9 1.5E-08 5.2E-13 95.5 15.3 220 258-501 4-253 (307)
109 2pzi_A Probable serine/threoni 98.9 3.9E-08 1.3E-12 103.4 19.1 190 322-517 402-610 (681)
110 4gco_A Protein STI-1; structur 98.9 1.2E-08 4.2E-13 81.4 11.8 115 408-524 8-125 (126)
111 2vsy_A XCC0866; transferase, g 98.9 2.4E-08 8.3E-13 103.2 17.0 146 325-474 3-154 (568)
112 3u3w_A Transcriptional activat 98.9 2.1E-07 7.2E-12 87.0 21.9 161 382-542 80-265 (293)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.9 3.7E-08 1.3E-12 87.2 15.8 128 380-513 9-154 (213)
114 2qfc_A PLCR protein; TPR, HTH, 98.9 6.5E-08 2.2E-12 90.5 17.9 164 379-542 77-265 (293)
115 3urz_A Uncharacterized protein 98.9 2.7E-08 9.2E-13 87.7 14.0 156 383-543 10-186 (208)
116 3dra_A Protein farnesyltransfe 98.9 3.6E-07 1.2E-11 84.6 21.6 228 288-521 44-300 (306)
117 1a17_A Serine/threonine protei 98.8 5.1E-08 1.8E-12 82.3 14.0 127 414-542 15-145 (166)
118 2r5s_A Uncharacterized protein 98.8 3.5E-08 1.2E-12 84.4 12.9 157 348-508 8-172 (176)
119 2xcb_A PCRH, regulatory protei 98.8 2.5E-08 8.6E-13 81.7 11.4 98 447-544 17-116 (142)
120 3qou_A Protein YBBN; thioredox 98.8 3.5E-08 1.2E-12 91.8 13.7 134 409-544 114-249 (287)
121 3upv_A Heat shock protein STI1 98.8 4.8E-08 1.7E-12 78.1 12.5 96 448-543 4-101 (126)
122 3dra_A Protein farnesyltransfe 98.8 3.4E-06 1.2E-10 78.0 26.2 212 327-542 49-286 (306)
123 2yhc_A BAMD, UPF0169 lipoprote 98.8 8.8E-08 3E-12 85.6 15.1 184 311-515 4-219 (225)
124 2e2e_A Formate-dependent nitri 98.8 1.9E-08 6.4E-13 86.2 9.7 121 422-544 20-145 (177)
125 2uy1_A Cleavage stimulation fa 98.8 5.1E-06 1.7E-10 83.3 28.6 367 92-508 6-412 (493)
126 2lni_A Stress-induced-phosphop 98.8 8.2E-08 2.8E-12 77.4 12.8 116 412-529 16-133 (133)
127 2vyi_A SGTA protein; chaperone 98.8 8E-08 2.8E-12 77.1 12.7 118 412-531 12-131 (131)
128 3rjv_A Putative SEL1 repeat pr 98.8 4.6E-07 1.6E-11 79.9 18.6 173 330-510 5-198 (212)
129 1na0_A Designed protein CTPR3; 98.8 1.2E-07 4.1E-12 75.3 13.4 115 412-528 9-125 (125)
130 1hh8_A P67PHOX, NCF-2, neutrop 98.8 1.9E-07 6.6E-12 82.5 15.7 120 419-543 13-150 (213)
131 2c2l_A CHIP, carboxy terminus 98.7 1.8E-08 6.2E-13 93.5 8.1 191 346-543 4-199 (281)
132 1p5q_A FKBP52, FK506-binding p 98.7 9.4E-08 3.2E-12 91.1 13.2 95 448-542 196-293 (336)
133 2uy1_A Cleavage stimulation fa 98.7 6.2E-07 2.1E-11 89.9 19.6 331 197-542 28-412 (493)
134 2kck_A TPR repeat; tetratricop 98.7 9.6E-08 3.3E-12 74.2 10.4 100 447-546 5-109 (112)
135 4f3v_A ESX-1 secretion system 98.7 1.7E-07 5.9E-12 84.5 13.0 124 417-543 107-237 (282)
136 1hxi_A PEX5, peroxisome target 98.7 7.8E-08 2.7E-12 76.1 9.4 95 450-544 19-115 (121)
137 3u3w_A Transcriptional activat 98.7 2.2E-06 7.5E-11 80.0 20.8 159 351-509 80-266 (293)
138 2vgx_A Chaperone SYCD; alterna 98.7 5.8E-08 2E-12 80.1 8.4 109 409-519 17-128 (148)
139 4gcn_A Protein STI-1; structur 98.7 1.3E-07 4.5E-12 75.6 10.2 95 449-543 9-112 (127)
140 3sz7_A HSC70 cochaperone (SGT) 98.7 1.4E-07 4.7E-12 79.5 10.8 101 414-516 13-115 (164)
141 3gyz_A Chaperone protein IPGC; 98.7 3E-07 1E-11 75.6 12.5 105 408-514 31-138 (151)
142 3q49_B STIP1 homology and U bo 98.6 3.1E-07 1.1E-11 74.5 12.1 99 446-544 7-107 (137)
143 3gw4_A Uncharacterized protein 98.6 6.2E-07 2.1E-11 78.5 14.6 153 389-542 4-175 (203)
144 2qfc_A PLCR protein; TPR, HTH, 98.6 1.9E-06 6.5E-11 80.4 18.6 162 348-509 77-266 (293)
145 1elw_A TPR1-domain of HOP; HOP 98.6 4E-07 1.4E-11 71.4 11.9 96 448-543 4-101 (118)
146 2e2e_A Formate-dependent nitri 98.6 3.5E-07 1.2E-11 78.1 12.0 128 388-518 21-153 (177)
147 2fbn_A 70 kDa peptidylprolyl i 98.6 3.4E-07 1.2E-11 79.9 11.9 167 356-543 14-186 (198)
148 2lni_A Stress-induced-phosphop 98.6 4.2E-07 1.5E-11 73.1 11.5 99 445-543 13-113 (133)
149 1elw_A TPR1-domain of HOP; HOP 98.6 7.1E-07 2.4E-11 69.9 12.5 110 413-524 5-116 (118)
150 2dba_A Smooth muscle cell asso 98.6 6E-07 2.1E-11 73.8 12.6 97 447-543 27-128 (148)
151 4f3v_A ESX-1 secretion system 98.6 1.3E-06 4.4E-11 78.9 15.3 137 380-521 105-248 (282)
152 1na0_A Designed protein CTPR3; 98.6 5.4E-07 1.8E-11 71.5 11.5 96 448-543 9-106 (125)
153 3upv_A Heat shock protein STI1 98.6 6.5E-07 2.2E-11 71.4 11.9 111 413-525 5-123 (126)
154 2xcb_A PCRH, regulatory protei 98.6 4.5E-07 1.5E-11 74.2 11.0 109 413-523 19-129 (142)
155 3rkv_A Putative peptidylprolyl 98.6 4.9E-07 1.7E-11 75.9 11.5 64 480-543 63-126 (162)
156 2hr2_A Hypothetical protein; a 98.6 2.8E-07 9.7E-12 74.8 9.4 93 451-543 14-131 (159)
157 3gw4_A Uncharacterized protein 98.6 5.6E-07 1.9E-11 78.7 12.3 153 358-510 4-177 (203)
158 3sz7_A HSC70 cochaperone (SGT) 98.5 1.1E-06 3.8E-11 73.9 13.2 99 447-545 10-110 (164)
159 2vyi_A SGTA protein; chaperone 98.5 5.9E-07 2E-11 71.9 10.6 97 447-543 11-109 (131)
160 1a17_A Serine/threonine protei 98.5 1.9E-06 6.6E-11 72.3 14.3 129 378-509 14-146 (166)
161 3q7a_A Farnesyltransferase alp 98.5 8.7E-05 3E-09 69.4 25.7 229 287-521 65-344 (349)
162 3q49_B STIP1 homology and U bo 98.5 1.4E-06 4.7E-11 70.6 11.6 113 411-525 8-127 (137)
163 2fbn_A 70 kDa peptidylprolyl i 98.5 3.1E-07 1.1E-11 80.1 8.1 96 448-543 38-151 (198)
164 2dba_A Smooth muscle cell asso 98.5 2.4E-06 8.3E-11 70.1 13.2 113 411-526 27-145 (148)
165 2xev_A YBGF; tetratricopeptide 98.5 6.7E-07 2.3E-11 71.6 9.4 92 452-543 6-105 (129)
166 3q7a_A Farnesyltransferase alp 98.4 1.5E-05 5.2E-10 74.4 18.9 215 325-543 68-331 (349)
167 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2.5E-06 8.4E-11 85.1 14.1 145 377-543 268-415 (457)
168 1wao_1 Serine/threonine protei 98.4 7.6E-07 2.6E-11 89.1 10.3 119 419-539 13-135 (477)
169 3k9i_A BH0479 protein; putativ 98.4 2.6E-07 8.8E-12 72.6 5.6 83 461-543 3-90 (117)
170 1elr_A TPR2A-domain of HOP; HO 98.4 8.9E-07 3E-11 70.9 8.7 94 449-542 5-107 (131)
171 1elr_A TPR2A-domain of HOP; HO 98.4 1.2E-06 4.1E-11 70.1 9.1 110 414-526 6-124 (131)
172 3dss_A Geranylgeranyl transfer 98.4 8.1E-05 2.8E-09 69.2 21.9 191 327-521 90-316 (331)
173 4b4t_Q 26S proteasome regulato 98.4 5.5E-06 1.9E-10 82.2 15.1 163 380-542 58-244 (434)
174 3ro3_A PINS homolog, G-protein 98.4 1.8E-06 6.2E-11 72.1 9.9 128 416-543 13-158 (164)
175 2xev_A YBGF; tetratricopeptide 98.4 5.2E-06 1.8E-10 66.3 12.1 105 418-524 8-120 (129)
176 4gcn_A Protein STI-1; structur 98.3 2.5E-06 8.6E-11 68.0 9.8 94 417-512 13-115 (127)
177 3dss_A Geranylgeranyl transfer 98.3 0.00011 3.8E-09 68.3 21.9 179 362-543 90-304 (331)
178 2c2l_A CHIP, carboxy terminus 98.3 3E-06 1E-10 78.3 11.3 113 411-525 3-117 (281)
179 2if4_A ATFKBP42; FKBP-like, al 98.3 1.3E-06 4.6E-11 83.1 8.8 149 377-545 179-330 (338)
180 1hxi_A PEX5, peroxisome target 98.3 3.1E-06 1E-10 66.8 9.2 97 416-514 21-119 (121)
181 2kck_A TPR repeat; tetratricop 98.3 3.5E-06 1.2E-10 65.2 9.4 99 414-514 8-111 (112)
182 1p5q_A FKBP52, FK506-binding p 98.3 1.1E-05 3.9E-10 76.6 14.4 131 376-508 146-293 (336)
183 1ihg_A Cyclophilin 40; ppiase 98.3 5E-06 1.7E-10 80.1 11.9 138 378-536 224-363 (370)
184 3rkv_A Putative peptidylprolyl 98.3 2.6E-06 9E-11 71.3 8.7 79 447-525 62-143 (162)
185 1wao_1 Serine/threonine protei 98.3 9.9E-06 3.4E-10 81.0 14.2 115 355-472 15-134 (477)
186 3k9i_A BH0479 protein; putativ 98.3 1.1E-06 3.8E-11 68.9 5.8 93 425-518 3-99 (117)
187 1dce_A Protein (RAB geranylger 98.2 6E-05 2E-09 76.8 19.0 169 361-532 44-244 (567)
188 3ma5_A Tetratricopeptide repea 98.2 8.5E-06 2.9E-10 61.6 9.4 66 478-543 5-70 (100)
189 2l6j_A TPR repeat-containing p 98.2 6.3E-07 2.1E-11 69.5 3.1 93 447-539 3-103 (111)
190 4b4t_Q 26S proteasome regulato 98.2 3.4E-05 1.2E-09 76.4 16.2 160 384-543 11-204 (434)
191 3n71_A Histone lysine methyltr 98.2 7.6E-06 2.6E-10 81.2 11.0 123 422-544 319-465 (490)
192 3ro3_A PINS homolog, G-protein 98.2 1.1E-05 3.9E-10 67.1 10.6 133 379-511 11-160 (164)
193 1ihg_A Cyclophilin 40; ppiase 98.1 1.2E-05 4.1E-10 77.4 11.5 112 413-543 224-336 (370)
194 2hr2_A Hypothetical protein; a 98.1 7E-06 2.4E-10 66.7 8.2 74 450-523 59-145 (159)
195 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 1E-05 3.5E-10 80.6 10.9 95 450-544 270-381 (457)
196 2kat_A Uncharacterized protein 98.1 9.2E-06 3.2E-10 63.3 7.9 78 466-543 3-82 (115)
197 1na3_A Designed protein CTPR2; 98.1 1.8E-05 6.1E-10 58.4 9.2 81 448-528 9-91 (91)
198 2if4_A ATFKBP42; FKBP-like, al 98.1 1E-05 3.5E-10 76.9 9.4 153 346-515 179-334 (338)
199 3bee_A Putative YFRE protein; 98.0 7.2E-05 2.5E-09 55.1 11.2 69 477-545 3-74 (93)
200 1zu2_A Mitochondrial import re 98.0 4.6E-06 1.6E-10 67.5 4.4 85 460-544 14-121 (158)
201 2l6j_A TPR repeat-containing p 97.9 4.1E-05 1.4E-09 58.9 8.7 67 478-544 2-68 (111)
202 1klx_A Cysteine rich protein B 97.9 0.00017 5.8E-09 58.1 12.1 110 427-544 10-127 (138)
203 1dce_A Protein (RAB geranylger 97.9 0.00017 5.8E-09 73.5 14.5 152 391-546 43-224 (567)
204 3n71_A Histone lysine methyltr 97.9 2.1E-05 7.3E-10 78.0 7.5 115 456-588 317-449 (490)
205 3lvg_A Clathrin heavy chain 1; 97.8 4.2E-05 1.4E-09 72.6 8.2 235 48-298 53-326 (624)
206 1pc2_A Mitochondria fission pr 97.8 0.00013 4.3E-09 58.4 9.7 91 477-593 29-124 (152)
207 1na3_A Designed protein CTPR2; 97.8 9.8E-05 3.3E-09 54.3 8.2 65 479-543 8-72 (91)
208 3qwp_A SET and MYND domain-con 97.7 0.00014 4.7E-09 71.2 10.8 116 455-588 294-427 (429)
209 2kat_A Uncharacterized protein 97.7 0.00016 5.4E-09 56.1 9.1 82 430-513 3-86 (115)
210 1zu2_A Mitochondrial import re 97.7 2.8E-05 9.5E-10 63.0 4.5 88 426-515 16-126 (158)
211 1klx_A Cysteine rich protein B 97.6 0.00075 2.6E-08 54.2 12.2 111 391-510 9-127 (138)
212 2kc7_A BFR218_protein; tetratr 97.6 8.1E-05 2.8E-09 55.9 5.3 81 454-542 6-89 (99)
213 3qww_A SET and MYND domain-con 97.6 0.0001 3.5E-09 71.9 7.2 83 460-542 310-410 (433)
214 2kc7_A BFR218_protein; tetratr 97.5 0.00027 9.1E-09 53.0 7.4 59 486-544 6-65 (99)
215 3ly7_A Transcriptional activat 97.4 0.0041 1.4E-07 58.1 14.9 47 374-422 191-243 (372)
216 3qww_A SET and MYND domain-con 97.3 0.00087 3E-08 65.3 10.3 94 424-517 310-424 (433)
217 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.7E-08 49.1 8.3 64 376-440 6-69 (100)
218 3qwp_A SET and MYND domain-con 97.2 0.0029 9.9E-08 61.8 12.3 101 419-519 294-415 (429)
219 3lvg_A Clathrin heavy chain 1; 97.0 0.0002 6.8E-09 68.1 2.3 367 150-532 54-514 (624)
220 3u64_A Protein TP_0956; tetrat 97.0 0.0024 8.1E-08 57.0 8.9 86 464-549 179-275 (301)
221 1y8m_A FIS1; mitochondria, unk 97.0 0.018 6.1E-07 45.0 12.6 91 477-593 36-130 (144)
222 1nzn_A CGI-135 protein, fissio 97.0 0.0035 1.2E-07 48.1 8.3 65 478-542 33-102 (126)
223 1wy6_A Hypothetical protein ST 97.0 0.046 1.6E-06 41.9 13.8 141 387-546 17-157 (172)
224 3ly7_A Transcriptional activat 96.9 0.0062 2.1E-07 56.9 11.2 133 409-545 191-341 (372)
225 1pc2_A Mitochondria fission pr 96.9 0.0051 1.7E-07 49.2 8.5 91 427-519 13-110 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.8 0.0097 3.3E-07 44.8 9.5 71 451-521 8-87 (104)
227 1qsa_A Protein (soluble lytic 96.8 0.57 2E-05 47.7 29.5 114 391-508 228-347 (618)
228 3mkq_A Coatomer beta'-subunit; 96.7 0.11 3.8E-06 55.8 20.8 152 192-370 608-760 (814)
229 3mkq_A Coatomer beta'-subunit; 96.6 0.082 2.8E-06 56.8 19.1 47 356-404 662-708 (814)
230 2v5f_A Prolyl 4-hydroxylase su 96.6 0.0089 3.1E-07 45.0 7.9 65 479-543 4-75 (104)
231 3bee_A Putative YFRE protein; 96.5 0.02 7E-07 41.8 9.2 71 445-515 3-78 (93)
232 3o48_A Mitochondria fission 1 96.4 0.017 5.8E-07 44.4 8.4 89 477-591 37-129 (134)
233 4h7y_A Dual specificity protei 96.3 0.03 1E-06 44.0 9.4 54 492-545 72-125 (161)
234 3mkq_B Coatomer subunit alpha; 96.2 0.11 3.7E-06 42.7 12.7 103 355-475 14-116 (177)
235 1nzn_A CGI-135 protein, fissio 95.7 0.12 4.1E-06 39.6 10.1 90 428-519 17-113 (126)
236 3u64_A Protein TP_0956; tetrat 95.6 0.024 8.2E-07 50.6 6.8 105 428-541 179-296 (301)
237 4gns_B Protein CSD3, chitin bi 95.5 0.062 2.1E-06 55.7 10.3 55 487-541 344-398 (754)
238 3mkq_B Coatomer subunit alpha; 94.9 1.3 4.5E-05 36.3 17.1 129 320-475 14-142 (177)
239 4h7y_A Dual specificity protei 94.4 0.57 2E-05 36.9 10.6 57 462-519 74-133 (161)
240 2wpv_A GET4, UPF0363 protein Y 94.4 3 0.0001 38.1 21.1 181 223-440 22-216 (312)
241 4ady_A RPN2, 26S proteasome re 94.0 7.5 0.00026 41.4 26.7 251 253-508 382-657 (963)
242 4ady_A RPN2, 26S proteasome re 92.8 12 0.0004 40.0 30.5 408 68-489 221-670 (963)
243 3ffl_A Anaphase-promoting comp 92.8 0.51 1.7E-05 38.0 8.1 28 515-542 123-150 (167)
244 1wy6_A Hypothetical protein ST 92.4 3 0.0001 32.2 12.2 139 288-445 19-157 (172)
245 3lpz_A GET4 (YOR164C homolog); 92.3 6.7 0.00023 36.0 22.5 167 349-542 38-215 (336)
246 3ltm_A Alpha-REP4; protein eng 91.8 5.4 0.00018 33.9 17.8 81 181-261 31-111 (211)
247 3ltj_A Alpharep-4; protein eng 91.6 5.5 0.00019 33.6 17.8 105 154-260 32-136 (201)
248 3ltm_A Alpha-REP4; protein eng 91.3 6.1 0.00021 33.6 17.6 153 149-304 32-184 (211)
249 2ff4_A Probable regulatory pro 91.0 0.71 2.4E-05 44.2 8.6 67 483-549 174-245 (388)
250 1y8m_A FIS1; mitochondria, unk 90.8 2.6 8.8E-05 33.0 9.8 74 445-518 36-115 (144)
251 3o48_A Mitochondria fission 1 89.7 1.7 5.8E-05 33.5 7.9 73 446-518 38-116 (134)
252 4fhn_B Nucleoporin NUP120; pro 89.7 14 0.00048 41.1 18.7 142 219-363 817-988 (1139)
253 1v54_E Cytochrome C oxidase po 89.7 1.5 5.1E-05 31.7 6.9 63 392-456 25-87 (109)
254 4b4t_P 26S proteasome regulato 89.4 10 0.00034 36.9 15.3 185 289-474 29-244 (445)
255 2wpv_A GET4, UPF0363 protein Y 89.3 13 0.00043 33.9 22.7 168 349-542 36-216 (312)
256 3esl_A Checkpoint serine/threo 89.0 8.3 0.00028 32.2 12.1 104 465-593 61-169 (202)
257 3ffl_A Anaphase-promoting comp 88.6 2.8 9.7E-05 33.7 8.8 23 452-474 126-148 (167)
258 3lpz_A GET4 (YOR164C homolog); 88.5 15 0.00051 33.7 26.3 167 248-440 38-215 (336)
259 3txn_A 26S proteasome regulato 88.4 17 0.00059 34.4 16.7 162 312-473 20-206 (394)
260 1v54_E Cytochrome C oxidase po 88.4 4 0.00014 29.5 8.3 56 467-522 32-87 (109)
261 2uwj_G Type III export protein 87.8 4.3 0.00015 29.1 8.1 59 253-314 47-105 (115)
262 4gns_B Protein CSD3, chitin bi 87.2 2.8 9.4E-05 43.6 10.1 52 476-528 609-660 (754)
263 1zbp_A Hypothetical protein VP 86.1 1.3 4.5E-05 39.0 6.0 55 458-512 7-63 (273)
264 2ff4_A Probable regulatory pro 85.7 5.9 0.0002 37.7 11.1 68 382-450 176-247 (388)
265 3ltj_A Alpharep-4; protein eng 85.6 15 0.00051 30.8 18.8 156 167-326 12-167 (201)
266 1zbp_A Hypothetical protein VP 85.3 1.8 6.1E-05 38.1 6.4 50 423-474 8-57 (273)
267 2y69_E Cytochrome C oxidase su 85.2 3.3 0.00011 31.7 6.9 63 392-456 68-130 (152)
268 2uwj_G Type III export protein 84.8 7.7 0.00026 27.9 8.1 88 19-110 11-98 (115)
269 1qsa_A Protein (soluble lytic 83.5 41 0.0014 34.2 29.6 170 360-542 228-409 (618)
270 3kea_A K1L; tropism, ANK repea 83.5 21 0.00072 32.0 13.4 16 59-74 38-53 (285)
271 4fhn_B Nucleoporin NUP120; pro 83.3 7.4 0.00025 43.3 12.0 61 482-542 901-966 (1139)
272 2p58_C Putative type III secre 83.1 8.1 0.00028 27.8 7.7 88 19-110 12-99 (116)
273 2y69_E Cytochrome C oxidase su 81.4 11 0.00037 29.0 8.3 56 467-522 75-130 (152)
274 4b4t_P 26S proteasome regulato 78.5 50 0.0017 31.9 22.3 175 259-434 30-240 (445)
275 4b4t_R RPN7, 26S proteasome re 78.3 6.5 0.00022 38.1 8.4 96 414-509 133-237 (429)
276 4b4t_R RPN7, 26S proteasome re 77.8 23 0.00078 34.2 12.1 93 348-440 133-236 (429)
277 4a1g_A Mitotic checkpoint seri 77.6 18 0.00061 28.7 9.1 80 465-547 52-134 (152)
278 2wvi_A Mitotic checkpoint seri 73.5 28 0.00096 28.0 9.4 79 466-547 48-129 (164)
279 1n11_A Ankyrin; clathrin, BAND 67.6 88 0.003 29.9 17.6 14 256-269 220-233 (437)
280 1n11_A Ankyrin; clathrin, BAND 67.2 90 0.0031 29.8 17.3 234 22-271 19-268 (437)
281 1wdy_A 2-5A-dependent ribonucl 64.7 73 0.0025 27.9 12.9 83 85-177 7-94 (285)
282 4b4t_S RPN3, 26S proteasome re 62.7 32 0.0011 33.7 9.1 62 450-511 233-301 (523)
283 3kea_A K1L; tropism, ANK repea 62.6 41 0.0014 30.0 9.7 68 62-134 9-78 (285)
284 1k1a_A B-cell lymphoma 3-encod 58.9 84 0.0029 26.7 13.9 28 87-114 13-40 (241)
285 3mv2_A Coatomer subunit alpha; 56.9 1.1E+02 0.0039 27.7 12.5 61 470-544 195-257 (325)
286 3b7b_A Euchromatic histone-lys 54.7 89 0.003 26.5 10.2 10 167-176 89-98 (237)
287 4a1g_A Mitotic checkpoint seri 53.3 74 0.0025 25.2 8.1 46 264-309 84-134 (152)
288 3eu9_A Huntingtin-interacting 52.3 1.1E+02 0.0036 25.9 13.7 16 224-239 184-199 (240)
289 3esl_A Checkpoint serine/threo 52.1 1E+02 0.0035 25.7 10.9 58 390-448 92-150 (202)
290 1wdy_A 2-5A-dependent ribonucl 51.5 1.2E+02 0.0042 26.4 17.5 14 256-269 227-240 (285)
291 4gq2_M Nucleoporin NUP120; bet 51.3 1.3E+02 0.0044 32.6 12.4 86 418-509 816-926 (950)
292 2p58_C Putative type III secre 50.6 68 0.0023 23.2 11.3 62 353-417 47-108 (116)
293 4aez_C MAD3, mitotic spindle c 50.0 62 0.0021 27.5 7.6 48 498-545 132-181 (223)
294 4b4t_S RPN3, 26S proteasome re 49.9 28 0.00097 34.1 6.3 64 480-545 231-301 (523)
295 1ya0_A SMG-7 transcript varian 47.9 66 0.0022 31.6 8.7 57 486-542 158-214 (497)
296 2qx5_A Nucleoporin NIC96; mRNA 47.1 2.5E+02 0.0086 28.7 14.8 22 458-479 548-569 (661)
297 2nsz_A Programmed cell death p 46.0 62 0.0021 24.8 6.6 65 349-413 10-79 (129)
298 1oyz_A Hypothetical protein YI 46.0 1.5E+02 0.0053 25.9 17.8 122 181-305 140-263 (280)
299 2qx5_A Nucleoporin NIC96; mRNA 45.8 2.3E+02 0.008 28.9 12.5 18 524-541 548-565 (661)
300 3b7b_A Euchromatic histone-lys 45.5 1.4E+02 0.0047 25.2 10.7 111 156-270 47-166 (237)
301 1k1a_A B-cell lymphoma 3-encod 44.8 1.4E+02 0.0048 25.2 13.9 83 22-105 14-101 (241)
302 3eu9_A Huntingtin-interacting 44.3 1.4E+02 0.0049 25.0 13.0 17 254-270 183-199 (240)
303 2d2s_A Exocyst complex compone 42.9 74 0.0025 27.5 7.3 30 445-474 88-117 (235)
304 2ion_A PDCD4, programmed cell 41.7 1.1E+02 0.0039 24.1 7.7 61 249-309 13-78 (152)
305 3ljn_A Hypothetical protein; a 41.7 2.1E+02 0.0072 26.3 11.6 85 19-107 22-108 (364)
306 2d2s_A Exocyst complex compone 40.8 87 0.003 27.0 7.5 22 419-440 25-46 (235)
307 4gq2_M Nucleoporin NUP120; bet 39.6 3.9E+02 0.013 28.8 14.1 48 313-360 899-950 (950)
308 3bqo_A Telomeric repeat-bindin 38.8 1.6E+02 0.0056 24.3 8.0 66 464-529 94-166 (211)
309 3jxi_A Vanilloid receptor-rela 38.7 1.3E+02 0.0045 25.9 8.8 53 89-141 11-72 (260)
310 2nsz_A Programmed cell death p 38.5 1.3E+02 0.0044 22.9 9.1 61 249-309 11-76 (129)
311 3aji_A 26S proteasome non-ATPa 38.2 1.8E+02 0.006 24.4 10.7 19 56-74 10-28 (231)
312 2ion_A PDCD4, programmed cell 38.1 57 0.002 25.8 5.4 65 349-413 12-81 (152)
313 3i5p_A Nucleoporin NUP170; hel 37.4 2.6E+02 0.009 27.6 11.0 68 477-544 175-247 (525)
314 3aji_A 26S proteasome non-ATPa 35.2 2E+02 0.0067 24.0 13.2 15 60-74 48-62 (231)
315 3mkr_B Coatomer subunit alpha; 35.1 2.6E+02 0.0088 25.4 9.7 61 470-544 186-248 (320)
316 1oyz_A Hypothetical protein YI 34.8 2.3E+02 0.0079 24.7 22.3 21 487-508 242-262 (280)
317 2wvi_A Mitotic checkpoint seri 34.7 1.8E+02 0.0061 23.4 9.2 82 66-150 47-131 (164)
318 3d9h_A CDNA FLJ77766, highly s 33.7 2.5E+02 0.0084 24.7 11.7 116 52-178 15-148 (285)
319 2zu6_B Programmed cell death p 33.4 2.7E+02 0.0093 25.1 9.9 60 380-440 169-230 (307)
320 3bu8_A Telomeric repeat-bindin 31.1 1.9E+02 0.0066 24.3 7.4 27 455-481 121-148 (235)
321 3txn_A 26S proteasome regulato 31.1 3.4E+02 0.012 25.5 29.3 91 445-545 253-345 (394)
322 3ygs_P Procaspase 9; apoptosis 29.0 64 0.0022 23.1 4.0 35 260-294 52-86 (97)
323 3ljn_A Hypothetical protein; a 28.9 3.4E+02 0.012 24.8 11.8 13 226-238 182-194 (364)
324 3ygs_P Procaspase 9; apoptosis 27.9 57 0.0019 23.4 3.5 61 35-99 25-87 (97)
325 2p1h_A APAF-1, apoptotic prote 27.7 83 0.0029 22.2 4.4 61 33-97 24-84 (94)
326 1bd8_A P19INK4D CDK4/6 inhibit 27.6 2.1E+02 0.0071 21.9 9.3 19 56-74 6-24 (156)
327 3eiq_C Programmed cell death p 26.9 3.8E+02 0.013 24.8 13.4 223 52-288 57-296 (358)
328 3hra_A Ankyrin repeat family p 26.5 2.5E+02 0.0087 22.6 8.6 18 160-179 12-29 (201)
329 2cfu_A SDSA1; SDS-hydrolase, l 26.2 1.4E+02 0.0047 30.7 7.4 63 464-529 436-498 (658)
330 4hbd_A KN motif and ankyrin re 25.1 2.4E+02 0.0081 24.7 8.1 144 89-240 117-273 (276)
331 2crb_A Nuclear receptor bindin 24.7 1E+02 0.0035 21.8 4.0 25 517-541 18-42 (97)
332 1te4_A Conserved protein MTH18 24.3 85 0.0029 23.7 4.3 8 190-197 63-70 (131)
333 3t8k_A Uncharacterized protein 23.9 2.8E+02 0.0095 22.5 7.7 92 59-151 13-110 (186)
334 2xig_A Ferric uptake regulatio 23.7 2.6E+02 0.009 21.8 7.5 62 300-362 16-77 (150)
335 4ets_A Ferric uptake regulatio 23.7 2.3E+02 0.0077 22.6 6.8 69 293-362 14-85 (162)
336 3hra_A Ankyrin repeat family p 23.3 2.9E+02 0.01 22.2 10.6 48 55-103 42-92 (201)
337 3jxi_A Vanilloid receptor-rela 23.2 2.8E+02 0.0097 23.6 8.2 53 22-74 10-71 (260)
338 2etb_A Transient receptor pote 23.0 3.3E+02 0.011 23.1 8.6 28 87-114 6-33 (256)
339 2w2u_A Hypothetical P60 katani 22.9 1.5E+02 0.0051 20.5 4.7 18 525-542 30-47 (83)
340 2rfa_A Transient receptor pote 22.9 3.3E+02 0.011 22.6 10.2 21 287-307 162-182 (232)
341 2fe3_A Peroxide operon regulat 22.8 2E+02 0.0067 22.4 6.2 61 301-362 12-72 (145)
342 2fe3_A Peroxide operon regulat 22.3 2.7E+02 0.0094 21.5 7.8 48 279-326 24-71 (145)
343 2w57_A Ferric uptake regulatio 22.3 2.8E+02 0.0096 21.6 7.5 62 300-362 6-68 (150)
344 1ug3_A EIF4GI, eukaryotic prot 22.1 3.6E+02 0.012 24.6 8.8 140 249-402 15-166 (339)
345 1te4_A Conserved protein MTH18 21.5 95 0.0032 23.4 4.1 52 210-261 52-103 (131)
346 1oai_A Nuclear RNA export fact 21.3 61 0.0021 20.7 2.3 22 94-115 34-56 (59)
347 4g8k_A 2-5A-dependent ribonucl 21.2 4.5E+02 0.015 23.6 16.4 14 256-269 176-189 (337)
348 2o03_A Probable zinc uptake re 21.2 89 0.003 23.9 3.8 52 13-66 11-62 (131)
349 1mzb_A Ferric uptake regulatio 21.1 80 0.0027 24.3 3.5 53 11-65 16-69 (136)
350 2v6y_A AAA family ATPase, P60 21.1 1.7E+02 0.0058 20.2 4.7 18 525-542 22-39 (83)
351 2ko4_A Mediator of RNA polymer 20.9 1.7E+02 0.0058 19.9 4.3 38 69-106 23-62 (81)
352 1wty_A Hypothetical protein TT 20.8 2.6E+02 0.009 20.7 7.8 76 464-542 4-80 (119)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.6e-42 Score=358.92 Aligned_cols=476 Identities=9% Similarity=-0.029 Sum_probs=392.8
Q ss_pred HHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHH
Q 037404 58 SLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMI 137 (605)
Q Consensus 58 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 137 (605)
.+.+.|....+...|..++.+++..|+.++..+.+.|++++|+.+|++|.. ..|+..++..+..+|...|+++.|..+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 355678888888999988888999999999999999999999999999985 467888999999999999999999999
Q ss_pred HHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC-------------------CeehHHHHHHHHHhCCC
Q 037404 138 HALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER-------------------DIVSWNSMIAGLVKGGE 198 (605)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~ 198 (605)
++.+... +++..+++.++.+|.+.| ++++|.++|++.... +..+|+.++.+|.+.|+
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLY--DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTT--CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHh--hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 9987643 678889999999999999 999999999965433 36789999999999999
Q ss_pred hhHHHHHHhhcC--CCC-cchHHHHHHHHHcCCChHHHHHH---HHhCCCC----ChhHHHHHHHHHHhcCCHHHHHHHH
Q 037404 199 LSEARRLFDEMP--ERD-AVSWNTILDGYAKAGEMNLAFEL---FEKIPHR----NIVSWSTMVWGYSKDGDMEMAKLLF 268 (605)
Q Consensus 199 ~~~A~~~~~~~~--~~~-~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~ 268 (605)
+++|++.|++|. .|+ ...+..+...+...+..+.+... +..+... ...+|+.++..|.+.|++++|.++|
T Consensus 216 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 999999999993 343 33444444444333322221110 2222222 2345667788899999999999999
Q ss_pred hhCCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 269 DRMPA--KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 269 ~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
+++.+ ++..+|+.++..|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++.+.+.. +.+.
T Consensus 296 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 373 (597)
T 2xpi_A 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKA 373 (597)
T ss_dssp HTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSH
T ss_pred HHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccH
Confidence 99987 667779999999999999999999999999875 4467789999999999999999999999998654 4578
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
.+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 452 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHM 452 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 899999999999999999999999875 4578899999999999999999999999999864 457789999999999
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcC
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN--AIIWGTLLGACRKHN 494 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g 494 (605)
+.|++++|.++|+++.+ ..+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|
T Consensus 453 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 530 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK 530 (597)
T ss_dssp HHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999987 34557889999999999999999999999988 34677 789999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++++|.+.++++.+..|+++.+|..++.+|.+.|++++|.++++++.+..
T Consensus 531 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999854
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-39 Score=338.73 Aligned_cols=472 Identities=7% Similarity=-0.064 Sum_probs=401.6
Q ss_pred CCCcchHHHHHHHhccCChhHHHHHhcccC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037404 47 RDPYIAPKLISSLALCRQMGLAIKVFNDIQ--DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKA 124 (605)
Q Consensus 47 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 124 (605)
+++..++.++..|.+.|++++|..+|+++. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence 567889999999999999999999999986 578889999999999999999999999998653 6788899999999
Q ss_pred hhccCCHHHHHHHHHHHHHh---------------CCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC---CeehH
Q 037404 125 CNGKNWFHLVQMIHALIYKC---------------GYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER---DIVSW 186 (605)
Q Consensus 125 ~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~---~~~~~ 186 (605)
+.+.|++++|..+|+.+... +.+.+..+|+.++.+|.+.| ++++|.++|+++.+. +...+
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS--NFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999852211 12234678999999999999 999999999998653 33455
Q ss_pred HHHHHHHHhCCChhHHHHH---HhhcCC----CCcchHHHHHHHHHcCCChHHHHHHHHhCCC--CChhHHHHHHHHHHh
Q 037404 187 NSMIAGLVKGGELSEARRL---FDEMPE----RDAVSWNTILDGYAKAGEMNLAFELFEKIPH--RNIVSWSTMVWGYSK 257 (605)
Q Consensus 187 ~~li~~~~~~g~~~~A~~~---~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~ 257 (605)
..+...+...+..+.+... +..+.. ....+|+.++..|.+.|++++|.++|+++.+ ++..++..++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 5555544433332222111 222221 1234566668888899999999999999987 788999999999999
Q ss_pred cCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHH
Q 037404 258 DGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVH 334 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 334 (605)
.|++++|.++|+++.+ .+...|+.++.++...|++++|..+++++.+.. +.+..++..+...|.+.|++++|.++|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999999999999853 356669999999999999999999999998753 557888999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 037404 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD 411 (605)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 411 (605)
+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. +.+..+|..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 397 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 397 SKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9998764 3467899999999999999999999999775 4578899999999999999999999999999864 447
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCCc--hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILPQ--VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWG 484 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~ 484 (605)
..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ .. +.+..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHH
Confidence 8899999999999999999999999998732 55777 789999999999999999999999998 33 34788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
.++.+|.+.|++++|.+.++++++.+|+++..+..++.+|.
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988774
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=6.1e-27 Score=231.38 Aligned_cols=336 Identities=13% Similarity=0.093 Sum_probs=238.2
Q ss_pred HHHHHHhCCChhHHHHHHhhc---CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCC--C-ChhHHHHHHHHHHhcCCHH
Q 037404 189 MIAGLVKGGELSEARRLFDEM---PERDAVSWNTILDGYAKAGEMNLAFELFEKIPH--R-NIVSWSTMVWGYSKDGDME 262 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~ 262 (605)
+...+...|++++|...++.. .+.+..+|..+...+.+.|++++|...|+++.+ | +..+|..+..++.+.|+++
T Consensus 39 l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHH
Confidence 333344444444444444433 112333444555555555555555555544431 2 2344556666666666666
Q ss_pred HHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHH
Q 037404 263 MAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINK 339 (605)
Q Consensus 263 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 339 (605)
+|.+.|+++.+. ....+..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+
T Consensus 119 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666666555422 22235666677777777777777777777653 33456677777777788888888888887776
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037404 340 YRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV 416 (605)
Q Consensus 340 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 416 (605)
.+. .+...+..+...+...|++++|...|++.. +.+..++..+...|...|++++|+..|+++.+.+ +.+..++.
T Consensus 198 ~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 275 (388)
T 1w3b_A 198 LDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYC 275 (388)
T ss_dssp HCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHH
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 552 356677788888888888888888887654 4466788888888999999999999999988853 33567788
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN 494 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 494 (605)
.+..++.+.|++++|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ...| +..++..++.++.+.|
T Consensus 276 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 353 (388)
T 1w3b_A 276 NLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 353 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 888889999999999999999887 35667888888999999999999999999887 4444 4678888899999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
++++|...++++++.+|+++.++..++.++...|+
T Consensus 354 ~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999988877764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.5e-26 Score=227.02 Aligned_cols=349 Identities=11% Similarity=0.053 Sum_probs=303.6
Q ss_pred HHHHHHhCCChhHHHHHHhhc--CCCC-cchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHH
Q 037404 189 MIAGLVKGGELSEARRLFDEM--PERD-AVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDME 262 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~ 262 (605)
+...+.+.|++++|+..+..+ ..|+ ...+..+...+...|++++|...++...+ .+..+|..+..+|.+.|+++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345677889999999999888 3454 45666777888999999999999987653 46688999999999999999
Q ss_pred HHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHH
Q 037404 263 MAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESGLLGLGMKVHASIN 338 (605)
Q Consensus 263 ~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 338 (605)
+|...|+++.+. +...|..+..++...|++++|...|+++.+. .|+ ...+..+...+...|++++|...+..+.
T Consensus 85 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 85 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999987532 3345899999999999999999999999986 354 4556777888899999999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 037404 339 KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTF 415 (605)
Q Consensus 339 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 415 (605)
+.. +.+..++..+...+...|++++|...|+++. +.+...|..+...+...|++++|+..+++..+.. +.+..++
T Consensus 163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 240 (388)
T 1w3b_A 163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence 865 3367889999999999999999999999876 4466789999999999999999999999998853 2357788
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKH 493 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~ 493 (605)
..+..++...|++++|...++++.+ ..+.+..++..++..+.+.|++++|.+.++++ ..+++..++..++..+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999987 34456788999999999999999999999998 3345788999999999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 494 NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|++++|...++++++..|+++.++..++.+|.+.|++++|...++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999974
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.3e-26 Score=232.36 Aligned_cols=182 Identities=15% Similarity=0.202 Sum_probs=171.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc---------hHHHHHHHHHHHHcCCCCChhHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL---------LGLGMKVHASINKYRFKCNTNVC 349 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~~ 349 (605)
++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. ++.|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 788899999999999999999999999999999999999999987654 67899999999999999999999
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 350 NALVDMYAKCGSLDNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 350 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 999999999999999999999987 5799999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS 461 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (605)
|+.++|.+++++|.+ .+..|+..||+.++..|+..
T Consensus 189 g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 189 KNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred CCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999998 69999999999999988764
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.3e-25 Score=225.20 Aligned_cols=200 Identities=12% Similarity=0.162 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC---------h
Q 037404 293 KEAARLYDQMEEAGLKPDD-GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS---------L 362 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 362 (605)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777766554 46788999999999999999999999999999999999999999987665 6
Q ss_pred HHHHHHHhcCC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHh
Q 037404 363 DNAMSVFNGMT----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSM 438 (605)
Q Consensus 363 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 438 (605)
+.|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999986 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 037404 439 ERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM---PVEPNAIIWGTLLGACRKH 493 (605)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 493 (605)
.+ .|+.||..+|++|+.+|++.|++++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 98 699999999999999999999999999999999 7899999999999888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-23 Score=214.52 Aligned_cols=387 Identities=10% Similarity=-0.038 Sum_probs=308.8
Q ss_pred chhhHHHHHHHhcCCCChHHHHHHHhccCC--CCeehHHHHHHHHHhCCChhHHHHHHhhc--CCC-CcchHHHHHHHHH
Q 037404 151 FVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIAGLVKGGELSEARRLFDEM--PER-DAVSWNTILDGYA 225 (605)
Q Consensus 151 ~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~ll~~~~ 225 (605)
..+..+...+.+.| +++.|...|+++.. |+...|..+..++.+.|++++|+..|+++ ..| +..++..+..++.
T Consensus 7 ~~~~~~g~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNK--KYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTS--CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 45667788899999 99999999998864 78888999999999999999999999988 334 4568888999999
Q ss_pred cCCChHHHHHHHHhCCC---CChhHHHHHHHHHHhcCCHHHHHHHH----------------------------------
Q 037404 226 KAGEMNLAFELFEKIPH---RNIVSWSTMVWGYSKDGDMEMAKLLF---------------------------------- 268 (605)
Q Consensus 226 ~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~---------------------------------- 268 (605)
..|++++|...|+.+.+ .+......++..+........+.+.+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999987753 23333333333333322222222111
Q ss_pred ----hhCCCC----------CcccHHHHHHHHHh---CCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHH
Q 037404 269 ----DRMPAK----------TLVPWTIIISGYAE---KGMAKEAARLYDQMEE-----AGLKP--------DDGTLISIL 318 (605)
Q Consensus 269 ----~~~~~~----------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~ll 318 (605)
...... +...+......+.. .|++++|+..|+++.+ ....| +...+..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 111100 01124444444554 8999999999999988 31122 245677788
Q ss_pred HHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 319 AACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
..+...|+++.|...++.+.+.... ...+..+..++...|++++|...++++. +.+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999887654 8889999999999999999999999765 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..++..+.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999864 335678888999999999999999999999873 4446778999999999999999999999887
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 475 ---PVEPN----AIIWGTLLGACRK---HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 475 ---~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+..++ ...+..++..+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|.+.++++.+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 4488889999999 9999999999999999999999999999999999999999999999999853
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.2e-22 Score=209.84 Aligned_cols=430 Identities=9% Similarity=-0.024 Sum_probs=245.2
Q ss_pred cccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHH
Q 037404 80 VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDS 159 (605)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (605)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456667777888888888888888887753 2356677777777778888888888888887765 2345667777777
Q ss_pred HHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCC------CcchHHHHHHHHHcCCChHHH
Q 037404 160 YSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPER------DAVSWNTILDGYAKAGEMNLA 233 (605)
Q Consensus 160 ~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~a 233 (605)
|...| +++.|...|+.+. .+.......+..+...+....|+..++.+... ........+..+....+.+.+
T Consensus 103 ~~~~g--~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 103 NESLG--NFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHT--CHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHcC--CHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 77777 7777777775332 22222222344444555556666666666321 111122233334444444444
Q ss_pred HHHHHhCCCCChh---HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC
Q 037404 234 FELFEKIPHRNIV---SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD 310 (605)
Q Consensus 234 ~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 310 (605)
...+......+.. ....+...+...+ .......|++++|..+|+++.+.. |+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~~a~~~~~~A~~~~~~~l~~~--p~ 234 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATD-----------------------EGYLVANDLLTKSTDMYHSLLSAN--TV 234 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSH-----------------------HHHHHHHHHHHHHHHHHHHHHC----CC
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhh-----------------------hhhHHHHHHHHHHHHHHHHHHHHC--CC
Confidence 4444443332221 2222222221110 000001134455555555554432 22
Q ss_pred --------HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhH
Q 037404 311 --------DGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVS 379 (605)
Q Consensus 311 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~ 379 (605)
..++..+...+...|+++.|...++.+.+... +...+..+...+...|++++|...|+++. +.+..+
T Consensus 235 ~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 312 (537)
T 3fp2_A 235 DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPT 312 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHH
Confidence 11233344445555555555555555555432 24455555555666666666666665443 334556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
|..+...+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+. .+.+...+..++..+.
T Consensus 313 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 313 YYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 6666666667777777777777666642 223455666666777777777777777777662 3344556667777777
Q ss_pred hcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 460 RSGRLKEALRLVQSM----P----VEPNAIIWGTLLGACRKH----------NAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
..|++++|.+.++++ + .......+......+... |++++|...++++++..|.++.++..++
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 777777777777665 1 111122234445566666 7888888888888888888777888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 037404 522 NIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+|.+.|++++|.+.++++.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888888877743
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=9.5e-23 Score=209.46 Aligned_cols=432 Identities=11% Similarity=-0.043 Sum_probs=323.1
Q ss_pred ccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHH
Q 037404 81 HLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSY 160 (605)
Q Consensus 81 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 160 (605)
..|......+.+.|++++|+..|+++.+.+ |+..++..+..++...|+++.|...++.+++.. +.+..++..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 456667788999999999999999999874 688889999999999999999999999999875 33557888899999
Q ss_pred HhcCCCChHHHHHHHhccCC---CCeehHHHHHHHHHhCCChhHHHHHHhhcC----CCCcchHHHH---HHHHHcCCCh
Q 037404 161 SKCGVVGVSLAKKLFMSMGE---RDIVSWNSMIAGLVKGGELSEARRLFDEMP----ERDAVSWNTI---LDGYAKAGEM 230 (605)
Q Consensus 161 ~~~g~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l---l~~~~~~~~~ 230 (605)
...| ++++|...|+++.. .+......++..+........+.+.+..+. .|+...+..- ..........
T Consensus 84 ~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 84 EGLG--KFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHTT--CHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHh--hHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 9999 99999999987643 233344444544444433333333332220 1111111000 0001111111
Q ss_pred HHHHHHHHhCCC----------CChhHHHHHHHHHHh---cCCHHHHHHHHhhCCC-----C------------CcccHH
Q 037404 231 NLAFELFEKIPH----------RNIVSWSTMVWGYSK---DGDMEMAKLLFDRMPA-----K------------TLVPWT 280 (605)
Q Consensus 231 ~~a~~~~~~~~~----------~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~------------~~~~~~ 280 (605)
..+...+..... .+...+......+.. .|++++|...|+++.+ . ....|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 122222222211 124455555555554 8999999999987654 1 122377
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
.+...+...|++++|...|+++.+.. |+...+..+..++...|+++.|...++.+.+.. +.+..++..+...+...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999865 447788889999999999999999999998765 346778899999999999
Q ss_pred ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 361 SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 361 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
++++|...|+++. +.+...+..+...|...|++++|+..++++.+.. +.+...+..+..++...|++++|...+++
T Consensus 319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999765 4467889999999999999999999999998853 33567888899999999999999999999
Q ss_pred hHHhhCCCCc----hHHHHHHHHHhhh---cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 438 MERDYGILPQ----VEHYGCMIDLLGR---SGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 438 ~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.......++ ...+..++..+.. .|++++|.+.++++ .. +.+..++..++..+...|++++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9774322232 3488999999999 99999999999987 32 34577888999999999999999999999999
Q ss_pred hcCCCCchHHHHH
Q 037404 509 LKGSDPGNYTMLS 521 (605)
Q Consensus 509 ~~p~~~~~~~~l~ 521 (605)
..|.++..+..+.
T Consensus 478 ~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 478 LARTMEEKLQAIT 490 (514)
T ss_dssp HCSSHHHHHHHHH
T ss_pred hccccHHHHHHHH
Confidence 9999888776663
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=7.6e-22 Score=199.05 Aligned_cols=325 Identities=12% Similarity=0.089 Sum_probs=228.5
Q ss_pred eehHHHHHHHHHhCCChhHHHHHHhhcC---CCCcchHHHHHHHHHcCCChHHHHHHHHhCCC---CChhHHHHHHHHHH
Q 037404 183 IVSWNSMIAGLVKGGELSEARRLFDEMP---ERDAVSWNTILDGYAKAGEMNLAFELFEKIPH---RNIVSWSTMVWGYS 256 (605)
Q Consensus 183 ~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 256 (605)
...+..+...+.+.|++++|+..|+++. +.+..++..+..++...|++++|...|+++.+ .+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~--------- 96 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA--------- 96 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH---------
Confidence 3455666666666666666666666552 22344455555555555555555555544432 12333
Q ss_pred hcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHH------------HHHH
Q 037404 257 KDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLIS------------ILAA 320 (605)
Q Consensus 257 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~------------ll~~ 320 (605)
|..++..|...|++++|...|+++.+. .|+. ..+.. +...
T Consensus 97 ----------------------~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 97 ----------------------RLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp ----------------------HHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555543 2222 22222 2344
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHH
Q 037404 321 CAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 397 (605)
+...|+++.|...++.+.+.. +.+..++..++.+|...|++++|...|+++. +.+..+|..++..|...|++++|+
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 677788888888888877654 3467778888888888999999988888775 457788899999999999999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHH------------HHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHHhhhcC
Q 037404 398 GLFSRMKDEGFGPD-KYTFVGV------------LCACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCMIDLLGRSG 462 (605)
Q Consensus 398 ~~~~~m~~~g~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g 462 (605)
..|+++.+. .|+ ...+..+ ...|...|++++|...++++.......|. ...+..++..+.+.|
T Consensus 232 ~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g 309 (450)
T 2y4t_A 232 SEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE 309 (450)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCC
Confidence 999998874 443 3344333 78899999999999999999873211111 457888999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH------------HHHhcC
Q 037404 463 RLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN------------IFAATG 528 (605)
Q Consensus 463 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~------------~~~~~g 528 (605)
++++|.+.++++ ...| +...|..++.+|...|++++|...++++++..|+++.++..++. .|...|
T Consensus 310 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg 389 (450)
T 2y4t_A 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILG 389 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSC
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhC
Confidence 999999999987 3334 68899999999999999999999999999999999999999984 455556
Q ss_pred -----ChHHHHHHHHH-HHhC
Q 037404 529 -----DWNKVANVRLQ-MKKT 543 (605)
Q Consensus 529 -----~~~~A~~~~~~-~~~~ 543 (605)
+.+++.+.+++ ..+.
T Consensus 390 ~~~~~~~~~~~~~y~~~~l~~ 410 (450)
T 2y4t_A 390 VKRNAKKQEIIKAYRKLALQW 410 (450)
T ss_dssp SSTTCCTTHHHHHHHHHHHHS
T ss_pred CCccCCHHHHHHHHHHHHHHh
Confidence 56777888876 4443
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=2.5e-21 Score=195.23 Aligned_cols=297 Identities=10% Similarity=0.021 Sum_probs=252.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037404 244 NIVSWSTMVWGYSKDGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAA 320 (605)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 320 (605)
+...+..++..|.+.|++++|..+|+++.+ .+...|..++.++...|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 346788888889999999999999988753 344558889999999999999999999999874 4457788899999
Q ss_pred HHccCchHHHHHHHHHHHHcCCCCCh---hHHHHH------------HHHHHhcCChHHHHHHHhcCC---CCChhHHHH
Q 037404 321 CAESGLLGLGMKVHASINKYRFKCNT---NVCNAL------------VDMYAKCGSLDNAMSVFNGMT---KKDLVSWNA 382 (605)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ 382 (605)
+...|++++|...++.+.+.... +. ..+..+ ...+...|++++|...|+++. +.+...+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 99999999999999999876532 33 455544 445899999999999999876 457789999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH--------
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM-------- 454 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 454 (605)
++..|...|++++|+..|+++.+.. +.+..++..+..+|...|++++|...++++... .+.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999998863 456788999999999999999999999999872 33344455444
Q ss_pred ----HHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 455 ----IDLLGRSGRLKEALRLVQSM-PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 455 ----~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+..+.+.|++++|.+.|+++ ...|+ ...+..++.++.+.|++++|+..++++++..|+++.++..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999998 33444 447788899999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 037404 525 AATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...|++++|...++++.+..+
T Consensus 340 ~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTSS
T ss_pred HHhcCHHHHHHHHHHHHHhCc
Confidence 999999999999999998543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=6.9e-21 Score=196.74 Aligned_cols=434 Identities=10% Similarity=0.000 Sum_probs=294.4
Q ss_pred cchHHHHHHHhccCChhHHHHHhcccC---CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhh
Q 037404 50 YIAPKLISSLALCRQMGLAIKVFNDIQ---DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACN 126 (605)
Q Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 126 (605)
..+..+...+.+.|++++|...|+++. +.++.+|..+..++.+.|++++|++.|+++.+.+ +.+..++..+...+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH
Confidence 445566777778888888888887765 3466677777888888888888888888887753 225566777777778
Q ss_pred ccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCC------CeehHHHHHHHHHhCCChh
Q 037404 127 GKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGER------DIVSWNSMIAGLVKGGELS 200 (605)
Q Consensus 127 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~g~~~ 200 (605)
..|++++|...++ .... .|+. ....+..+...+ ....|...+++.... ........+..+....+.+
T Consensus 105 ~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~--~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERN--LNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHH--HHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHH--HHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 8888888888875 3322 2221 122233444455 566677777766442 2223345566677777888
Q ss_pred HHHHHHhhcCCCCcc---hHHHHHHHHHcC--------CChHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCCHHHHHH
Q 037404 201 EARRLFDEMPERDAV---SWNTILDGYAKA--------GEMNLAFELFEKIPHRN---IVSWSTMVWGYSKDGDMEMAKL 266 (605)
Q Consensus 201 ~A~~~~~~~~~~~~~---~~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~ 266 (605)
.+...+......+.. ....+...+... |++++|..+++.+.+.+ ...+..+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~------------- 244 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAAL------------- 244 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHH-------------
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHH-------------
Confidence 887777777554433 222222222221 23444444444433211 111111111
Q ss_pred HHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh
Q 037404 267 LFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNT 346 (605)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 346 (605)
.+..+...+...|++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+.
T Consensus 245 -----------~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 245 -----------ALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp -----------HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred -----------HHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 1444556777788888888888888875 4556777778888888888888888888887765 3367
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 347 NVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 347 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
.++..+...+...|++++|...|+++. +.+...|..+...|...|++++|...++++.+.. +.+...+..+..++.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 778888888999999999999888765 4466788888899999999999999999988763 335667888888899
Q ss_pred ccCCHHHHHHHHHHhHHhhCCC----CchHHHHHHHHHhhhc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDYGIL----PQVEHYGCMIDLLGRS----------GRLKEALRLVQSM-PV-EPNAIIWGTLL 487 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~-~p~~~~~~~l~ 487 (605)
..|++++|...++++.+..... .....+......+... |++++|...|+++ .. +.+...+..++
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 9999999999998876632222 2334456667777787 9999999999987 32 34577888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
.++...|++++|...++++++..|.++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999988765443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=6e-20 Score=178.99 Aligned_cols=292 Identities=9% Similarity=-0.007 Sum_probs=192.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..++++.+.. +.+...+..+...+...
T Consensus 6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHc
Confidence 334444444444444444444443221 12224444444444445555555554444431 11233444444444445
Q ss_pred CchHHHHHHHHHHHHcCCC--CChhHHHH------------HHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFK--CNTNVCNA------------LVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGL 387 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~--~~~~~~~~------------l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~ 387 (605)
|++++|...++.+.+.... .+...+.. +...+...|++++|...++++. +.+...+..+...+
T Consensus 85 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF 164 (359)
T ss_dssp TCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 5555555555444443210 12222222 3567788888888888888765 44667788888888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH------------HHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG------------CMI 455 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------------~l~ 455 (605)
...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+. .++
T Consensus 165 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a 241 (359)
T 3ieg_A 165 IKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESA 241 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888753 446677888888888888888888888888773 223333332 336
Q ss_pred HHhhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 456 DLLGRSGRLKEALRLVQSM-PVEPN-A----IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
..+.+.|++++|.+.++++ ...|+ . ..+..+..++...|++++|...++++++.+|+++.++..++.++...|+
T Consensus 242 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 321 (359)
T 3ieg_A 242 EELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 6788999999999999987 32333 3 2345577889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 037404 530 WNKVANVRLQMKKT 543 (605)
Q Consensus 530 ~~~A~~~~~~~~~~ 543 (605)
+++|.+.++++.+.
T Consensus 322 ~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 322 YDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999974
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=4.5e-19 Score=172.72 Aligned_cols=277 Identities=10% Similarity=0.037 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCC----CHHHHHHH-
Q 037404 246 VSWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKP----DDGTLISI- 317 (605)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~l- 317 (605)
.++..+..++...|++++|...|+++.+. +...|..+...+...|++++|...|+++.+. .| +...+..+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH
Confidence 34444444444444555544444443321 2222455555555555555555555555543 23 12222222
Q ss_pred -----------HHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHH
Q 037404 318 -----------LAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAM 383 (605)
Q Consensus 318 -----------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l 383 (605)
...+...|+++.|...++.+.+.. +.+...+..+..++...|++++|...++++. +.+...+..+
T Consensus 116 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 194 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKI 194 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 456677788888888888777654 3356777888888888888888888888665 3466788888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH------------HHHHHhcccCCHHHHHHHHHHhHHhhCCCCch---
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFV------------GVLCACTHAGFIDKGVQYFYSMERDYGILPQV--- 448 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--- 448 (605)
...|...|++++|...+++..+.. +.+...+. .+...+...|++++|...++++.... +.+.
T Consensus 195 a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 271 (359)
T 3ieg_A 195 STLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYT 271 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHH
Confidence 888888999999999998888753 22333322 23566889999999999999998732 2222
Q ss_pred -HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 449 -EHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 449 -~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
..+..++..+...|++++|.+.++++ ...| +..++..++..+...|++++|...++++++.+|+++.++..+..+..
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33556888999999999999999988 3334 67899999999999999999999999999999999998888888765
Q ss_pred hcC
Q 037404 526 ATG 528 (605)
Q Consensus 526 ~~g 528 (605)
..+
T Consensus 352 ~~~ 354 (359)
T 3ieg_A 352 LLK 354 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.2e-18 Score=165.75 Aligned_cols=285 Identities=14% Similarity=0.054 Sum_probs=189.1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 243 RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 243 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
.+...+..++..+...|++++|.++|+++.+. +...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 34455556666666667777777766665432 23335556666677777777777777776643 334556666666
Q ss_pred HHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 320 ACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 320 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
.+...| +++.|...++.+.+.. +.+...+..+...+...|++++|...|+++. +.+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 677777 6777777777766554 2245566777777777777777777777654 3345566667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhC-------CCCchHHHHHHHHHhhhcCCHHHHH
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYG-------ILPQVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
|...+++..+.. +.+...+..+...+...|++++|...++++..... .+.....+..++..+...|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777643 33456677777777777777777777777765221 1333567777777777777777777
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH-HhcCCh
Q 037404 469 RLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF-AATGDW 530 (605)
Q Consensus 469 ~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 530 (605)
+.++++ .. +.+...+..++..+...|++++|...++++++..|+++..+..++.++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 777776 22 234566777777777777888888888877777777777777777777 344543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.83 E-value=3e-18 Score=164.80 Aligned_cols=265 Identities=11% Similarity=0.003 Sum_probs=230.5
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 037404 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353 (605)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 353 (605)
.++..+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|...+..+.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 455568888899999999999999999998864 3445566677888899999999999999998865 34678889999
Q ss_pred HHHHhcC-ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH
Q 037404 354 DMYAKCG-SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 354 ~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 429 (605)
..+...| ++++|...|+++. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999765 3466789999999999999999999999999864 334566777889999999999
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV----------EPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
+|...++++.+ ..+.+...+..++..+...|++++|.+.++++ .. +.+..++..++.++...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 44556788999999999999999999999877 11 3346788999999999999999
Q ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 499 AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
|...++++++..|.++.++..++.++...|++++|.+.++++.+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999988874
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=4.4e-16 Score=165.43 Aligned_cols=461 Identities=14% Similarity=0.080 Sum_probs=292.8
Q ss_pred HHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccC------------CCCcc---------
Q 037404 23 NLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQ------------DPDVH--------- 81 (605)
Q Consensus 23 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~~~~--------- 81 (605)
...+.+++.-....++..+..| ..++.++|+|...|.-.++-.+ +.+.+-+ +.|+.
T Consensus 848 ~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g 924 (1630)
T 1xi4_A 848 EVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACVAYERG 924 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHHHhccc
Confidence 3333444444455566666667 5789999999999986544322 2221111 11111
Q ss_pred -cHHHHHHHHHhCCCchH-HHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCCcchhhHHH
Q 037404 82 -LYNTLIRACVQNSLNAQ-AFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGY--FGDIFVPNSLI 157 (605)
Q Consensus 82 -~~~~ll~~~~~~~~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 157 (605)
.-.-||...-+++.++. |.-++++ -|...|..++.- +-+.=+++.++.....+ ..++.-....+
T Consensus 925 ~~d~eli~vt~~n~l~k~~arylv~r-------~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~v 992 (1630)
T 1xi4_A 925 QCDLELINVCNENSLFKSLSRYLVRR-------KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTV 992 (1630)
T ss_pred CCcHHHHHHHhcchhHHHHHHHHHHh-------cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHH
Confidence 11223333333333332 2222211 133344443311 11122233333332222 22344456677
Q ss_pred HHHHhcCCCChHHHHHHHhccCC-CC-----eehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChH
Q 037404 158 DSYSKCGVVGVSLAKKLFMSMGE-RD-----IVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMN 231 (605)
Q Consensus 158 ~~~~~~g~~~~~~a~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 231 (605)
..|...| .+.+|.++++++.- ++ ...-+.++.+..+. +..+..+...+...-+ ...+...+...|.++
T Consensus 993 Kaf~~ag--lp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 993 KAFMTAD--LPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHhCC--CHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence 7888888 88888888887752 22 23455566666665 4455555555543222 344677778888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 037404 232 LAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD 311 (605)
Q Consensus 232 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 311 (605)
+|..+|++... .....+.+ +-..+++++|.++.+++. .+..|..+..++...|++++|+..|.+. -|.
T Consensus 1067 EAf~IYkKa~~-~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~ 1134 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-NTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDP 1134 (1630)
T ss_pred HHHHHHHHcCC-HHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CCh
Confidence 88888888642 12222222 226778888888888763 3555888888888888888888888553 356
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcC
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHG 391 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 391 (605)
..|..++.+|.+.|++++|.+++....+.. +++...+.++.+|++.+++++...+. ..++...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcC
Confidence 677778888888888888888888777654 23333445888888888888644443 3456666777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|....
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 888888888874 36788888888888888888888776 34577888888888888888888776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc--CChHHHHHHHHH
Q 037404 472 QSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT--GDWNKVANVRLQ 539 (605)
Q Consensus 472 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~ 539 (605)
.. +..++..+..++..|.+.|.+++|+.+++.++.++|.+...+..|+.+|.+- ++..|+.++|..
T Consensus 1274 l~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1274 LH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred Hh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 65 3345666667888888888888888888888888888887777777776543 455555555543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1e-18 Score=171.06 Aligned_cols=282 Identities=12% Similarity=-0.028 Sum_probs=205.7
Q ss_pred hcCCHHHHHH-HHhhCCCC-------CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH
Q 037404 257 KDGDMEMAKL-LFDRMPAK-------TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG 328 (605)
Q Consensus 257 ~~~~~~~a~~-~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 328 (605)
-.|++++|.. .+++.... +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 55544321 12336666777777777777777777777653 334556666677777777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHH---------------HHHHHHHc
Q 037404 329 LGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNA---------------MLYGLAMH 390 (605)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~---------------l~~~~~~~ 390 (605)
.|...++.+.+.. +.+..++..+..+|...|++++|...++++.. .+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777777776654 33566677777777777777777777776542 12222211 13333488
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
|++++|+..++++.+..... +..++..+..++...|++++|...++++... .+.+...+..++..+...|++++|.+
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999854221 4788899999999999999999999999872 44567899999999999999999999
Q ss_pred HHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-----------CchHHHHHHHHHhcCChHHHHHH
Q 037404 470 LVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-----------PGNYTMLSNIFAATGDWNKVANV 536 (605)
Q Consensus 470 ~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~ 536 (605)
.++++ .. +.+...+..++.++...|++++|...++++++..|.+ +.++..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 33 3457789999999999999999999999999998887 78899999999999999999999
Q ss_pred HHHHHh
Q 037404 537 RLQMKK 542 (605)
Q Consensus 537 ~~~~~~ 542 (605)
+++..+
T Consensus 353 ~~~~l~ 358 (368)
T 1fch_A 353 DARDLS 358 (368)
T ss_dssp HTTCHH
T ss_pred HHHHHH
Confidence 875543
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=6e-16 Score=164.37 Aligned_cols=383 Identities=11% Similarity=0.094 Sum_probs=298.6
Q ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHH
Q 037404 116 FTYPFLLKACNGKNWFHLVQMIHALIYKCGY--FGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGL 193 (605)
Q Consensus 116 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 193 (605)
.--....++|...|.+.+|.++++.+.-.+- ..+....+.|+.+..+. +..+..++.+++...+ ...+...+
T Consensus 986 eeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~Ia 1059 (1630)
T 1xi4_A 986 EEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANIA 1059 (1630)
T ss_pred HHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHHH
Confidence 3345677888999999999999999984321 13345566677777666 4566666666665333 55688889
Q ss_pred HhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 037404 194 VKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPA 273 (605)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 273 (605)
...|.+++|..+|++....+ ...+.+ +-..+++++|.++.++. .+..+|..+..++...|++++|.+.|.+.
T Consensus 1060 i~lglyEEAf~IYkKa~~~~-~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNT-SAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHH-HHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence 99999999999999974221 112222 22778999999999977 44678999999999999999999999774
Q ss_pred CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 037404 274 KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353 (605)
Q Consensus 274 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 353 (605)
.+...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.++++....+. + .++...+..+.
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence 677779999999999999999999999888754 34333445888999999888655443 2 34556677899
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHH
Q 037404 354 DMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
..|...|++++|..+|..+ ..|..+...|.+.|++++|.+.+++. .+..+|..+..+|...|++..|..
T Consensus 1203 d~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~ 1271 (1630)
T 1xi4_A 1203 DRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQM 1271 (1630)
T ss_pred HHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999999999985 58999999999999999999999876 356889999999999999999988
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--CCHHHHHHHHHHHHhh
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKH--NAVELAEEVLDCLIRL 509 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 509 (605)
....+ ..++..+..++..|.+.|.+++|+.+++.. +..+. ...|.-+...+.+. ++..++.++|..-..+
T Consensus 1272 cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini 1345 (1630)
T 1xi4_A 1272 CGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNI 1345 (1630)
T ss_pred HHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 76543 345667789999999999999999999877 55443 34666666666554 5777777777766655
Q ss_pred cC-----CCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 510 KG-----SDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 510 ~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
.| .++..|..+..+|.+.|+++.|...+-
T Consensus 1346 ~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1346 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM 1379 (1630)
T ss_pred chHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 44 567789999999999999999985443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=4.5e-17 Score=165.58 Aligned_cols=347 Identities=10% Similarity=-0.005 Sum_probs=249.5
Q ss_pred ChHHHHHHHhccCC-CCeehHHHHHHHHHh----CCChhHHHHHHhhcCC-CCcchHHHHHHHHHc----CCChHHHHHH
Q 037404 167 GVSLAKKLFMSMGE-RDIVSWNSMIAGLVK----GGELSEARRLFDEMPE-RDAVSWNTILDGYAK----AGEMNLAFEL 236 (605)
Q Consensus 167 ~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~ 236 (605)
+.+.|...|++..+ .+...+..+...|.. .+++++|+..|++..+ .+...+..+...|.. .+++++|..+
T Consensus 58 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 137 (490)
T 2xm6_A 58 DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKW 137 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55555555544332 234445555555555 5566666666665522 234455555555555 5667777777
Q ss_pred HHhCCC-CChhHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-CcccHHHHHHHHHh----CCChHHHHHHHHHHHHcC
Q 037404 237 FEKIPH-RNIVSWSTMVWGYSK----DGDMEMAKLLFDRMPAK-TLVPWTIIISGYAE----KGMAKEAARLYDQMEEAG 306 (605)
Q Consensus 237 ~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~ 306 (605)
|++..+ .+...+..|...|.. .+++++|.+.|++..+. ++..+..+...|.. .+++++|...|++..+.|
T Consensus 138 ~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 138 FRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 666543 345566677777766 67788888887765433 34447777777776 788888888888888764
Q ss_pred CCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCh
Q 037404 307 LKPDDGTLISILAACAE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK----CGSLDNAMSVFNGMTK-KDL 377 (605)
Q Consensus 307 ~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~ 377 (605)
+...+..+...+.. .+++++|...++...+.+ +...+..+..+|.. .++.++|...|++..+ .++
T Consensus 218 ---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 218 ---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 45566666666664 778889998888887765 45667777777877 8899999999987764 466
Q ss_pred hHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHhHHhhCCCCchH
Q 037404 378 VSWNAMLYGLAMH-----GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG---FIDKGVQYFYSMERDYGILPQVE 449 (605)
Q Consensus 378 ~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 449 (605)
..+..+...|... +++++|+.+|++..+.| +...+..+...|...| +.++|.++|++..+. .+..
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~ 364 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKA 364 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHH
Confidence 7778888888887 89999999999998865 4556666777776656 789999999999872 4677
Q ss_pred HHHHHHHHhhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCC---CCchHH
Q 037404 450 HYGCMIDLLGR----SGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGS---DPGNYT 518 (605)
Q Consensus 450 ~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~ 518 (605)
.+..+...|.. .+++++|.+.|++.-...++..+..+...|.. .+++++|...|+++.+..|+ ++....
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 88888888888 89999999999988323467788888888888 89999999999999999854 777777
Q ss_pred HHHHHHHh
Q 037404 519 MLSNIFAA 526 (605)
Q Consensus 519 ~l~~~~~~ 526 (605)
.++.++..
T Consensus 445 ~l~~~~~~ 452 (490)
T 2xm6_A 445 TEKKLTAK 452 (490)
T ss_dssp HHTTSCHH
T ss_pred HHHhcCHh
Confidence 77766554
No 21
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2e-17 Score=157.73 Aligned_cols=374 Identities=10% Similarity=0.144 Sum_probs=153.1
Q ss_pred ccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHH
Q 037404 61 LCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHAL 140 (605)
Q Consensus 61 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 140 (605)
+.|+.++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 668899999999999665 48999999999999999999999653 5777999999999999999999998887
Q ss_pred HHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHH
Q 037404 141 IYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTI 220 (605)
Q Consensus 141 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 220 (605)
..+. .+++.+.+.|+.+|.+.| +++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|..+
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg--~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTN--RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhC--CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 7774 455778889999999999 99998877764 66779999999999999999999999977 478888
Q ss_pred HHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 037404 221 LDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYD 300 (605)
Q Consensus 221 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 300 (605)
+.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|.+++|+.+++
T Consensus 155 A~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888888888887 377888888888888888888876666543 333334457777777788888877777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---C---
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---K--- 374 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~--- 374 (605)
..+... +-....|+-+...+++- ++ +++.+.++.|..-. +
T Consensus 232 ~aL~le-~ah~~~ftel~il~~ky-~p--------------------------------~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 232 AALGLE-RAHMGMFTELAILYSKF-KP--------------------------------QKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp HHTTST-TCCHHHHHHHHHHHHTT-CH--------------------------------HHHHHHHHHHSTTSCHHHHHH
T ss_pred HHhCCc-HHHHHHHHHHHHHHHhc-CH--------------------------------HHHHHHHHHHHHHhcCcHHHH
Confidence 776533 22333444443333322 11 22223333332211 0
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 375 --KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 375 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
.+...|..+...|...++++.|.. .|.++ ...-+...|-.++.--....-+-+|+.++- . -.+...
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~-----~~p~~l 346 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAII---TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---E-----FKPLLL 346 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---H-----HCGGGH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---h-----cCHHHH
Confidence 145567777777777788877765 34443 111233333333322111111222333222 1 122235
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCC-------------CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSMPV-------------EPNAIIWGTLLGACRKHNAVELAEEV 502 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~ 502 (605)
+-|+.++...=+...+.++|++.+. ..+..+-.++-..|....+++.-+..
T Consensus 347 ~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr~s 410 (449)
T 1b89_A 347 NDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTS 410 (449)
T ss_dssp HHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 5566666556666666666666531 22333444555556666666544433
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=4.4e-17 Score=152.51 Aligned_cols=268 Identities=11% Similarity=-0.001 Sum_probs=191.1
Q ss_pred HhcCCHHHHHHHHhhCCCCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH
Q 037404 256 SKDGDMEMAKLLFDRMPAKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM 331 (605)
Q Consensus 256 ~~~~~~~~a~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 331 (605)
...|+++.|+..++.....++.. ...+.++|...|+++.|+..++. .-+|+..++..+...+...++.+.|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 34455555555555444333222 23345555566666665554433 12344555555666666666666666
Q ss_pred HHHHHHHHcCC-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 037404 332 KVHASINKYRF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP 410 (605)
Q Consensus 332 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 410 (605)
+.++.+...+. +.+...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++.+. .|
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DE 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--Cc
Confidence 66666665543 23456677778889999999999999998 667889999999999999999999999999986 35
Q ss_pred CHHHH---HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037404 411 DKYTF---VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGT 485 (605)
Q Consensus 411 ~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 485 (605)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|.+.++++ ...| ++.++..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 53211 22334455668999999999999983 5678889999999999999999999999997 3334 5778999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHH
Q 037404 486 LLGACRKHNAVEL-AEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 486 l~~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
++..+...|+.++ +.++++++.+.+|+++.+. +...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 9999999998876 6789999999999998544 4566666666665544
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.80 E-value=4.7e-16 Score=158.05 Aligned_cols=350 Identities=11% Similarity=0.008 Sum_probs=292.5
Q ss_pred CCeehHHHHHHHHHh----CCChhHHHHHHhhcCC-CCcchHHHHHHHHHc----CCChHHHHHHHHhCCC-CChhHHHH
Q 037404 181 RDIVSWNSMIAGLVK----GGELSEARRLFDEMPE-RDAVSWNTILDGYAK----AGEMNLAFELFEKIPH-RNIVSWST 250 (605)
Q Consensus 181 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~-~~~~~~~~ 250 (605)
.+...+..+...|.. .+++++|+..|++..+ .+...+..+...|.. .++.++|..+|++..+ .+...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 355666677777777 8999999999998843 466778888888888 8999999999988764 46778888
Q ss_pred HHHHHHh----cCCHHHHHHHHhhCCCC-CcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037404 251 MVWGYSK----DGDMEMAKLLFDRMPAK-TLVPWTIIISGYAE----KGMAKEAARLYDQMEEAGLKPDDGTLISILAAC 321 (605)
Q Consensus 251 l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 321 (605)
|...|.. .+++++|...|++..+. ++..+..+...|.. .+++++|+..|++..+.| +...+..+...|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999988 88999999999987654 44457788888887 789999999999999865 567777788888
Q ss_pred Hc----cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhHHHHHHHHHHH---
Q 037404 322 AE----SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK----CGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAM--- 389 (605)
Q Consensus 322 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~--- 389 (605)
.. .++.++|...++...+.+ +...+..+...|.. .++.++|...|++..+ .+...+..+...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLA 270 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Confidence 77 899999999999998876 56778888888886 8899999999998764 466778888888888
Q ss_pred -cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-
Q 037404 390 -HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA-----GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG- 462 (605)
Q Consensus 390 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 462 (605)
.+++++|+.+|++..+.| +...+..+...|... +++++|..++++..+. .+...+..+...|...|
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAIYFRLGS 343 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCC
Confidence 899999999999998765 456667777777776 8999999999999872 34567788888888766
Q ss_pred --CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHH
Q 037404 463 --RLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNK 532 (605)
Q Consensus 463 --~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~ 532 (605)
+.++|.+.|++.-...++..+..+...|.. .+++++|...++++.+. .++.++..|+.+|.. .+++++
T Consensus 344 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 421 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQ 421 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 889999999988323578888899999988 89999999999999885 467889999999998 899999
Q ss_pred HHHHHHHHHhCCC
Q 037404 533 VANVRLQMKKTRA 545 (605)
Q Consensus 533 A~~~~~~~~~~~~ 545 (605)
|...+++..+.+.
T Consensus 422 A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 422 AWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCC
Confidence 9999999999764
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=3e-16 Score=161.22 Aligned_cols=404 Identities=11% Similarity=0.040 Sum_probs=262.0
Q ss_pred CcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC--CCeehHHHHHH
Q 037404 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE--RDIVSWNSMIA 191 (605)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~--~~~~~~~~li~ 191 (605)
+...+..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.| +.+.|..+|++... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~--~~~~a~~~~~ral~~~p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAK--NYDKVEKLFQRCLMKVLHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT--CHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 55566666663 56778888888888877642 334556777777777777 78888888877654 45555655554
Q ss_pred HH-HhCCChhHHHH----HHhhcC-----CC-CcchHHHHHHHHHc---------CCChHHHHHHHHhCCC-CCh---hH
Q 037404 192 GL-VKGGELSEARR----LFDEMP-----ER-DAVSWNTILDGYAK---------AGEMNLAFELFEKIPH-RNI---VS 247 (605)
Q Consensus 192 ~~-~~~g~~~~A~~----~~~~~~-----~~-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~-~~~---~~ 247 (605)
.. ...|+.++|.+ +|++.. .| +...|...+..... .|+++.|..+|++..+ |.. ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 22 34566666554 444431 12 23344444443332 4555556666655443 111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH------HcC---CCCCH-------
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQME------EAG---LKPDD------- 311 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~------- 311 (605)
|..........|. ..+..++. ...+++..|..++..+. +.. ++|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2111111000000 00111110 12345666666665532 111 23431
Q ss_pred -HHHHHHHHHHHc----cCch----HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh-------cCChH-------HHHHH
Q 037404 312 -GTLISILAACAE----SGLL----GLGMKVHASINKYRFKCNTNVCNALVDMYAK-------CGSLD-------NAMSV 368 (605)
Q Consensus 312 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~ 368 (605)
..|...+..... .++. ..+...|+++.... +.+..+|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 233333332221 1232 36677888887754 4467888888888875 79987 89999
Q ss_pred HhcCCC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHhcccCCHHHHHHHHHHhHHhh
Q 037404 369 FNGMTK----KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD-K-YTFVGVLCACTHAGFIDKGVQYFYSMERDY 442 (605)
Q Consensus 369 ~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 442 (605)
|++... .+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|+++.+.
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~- 385 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED- 385 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 997653 35788999999999999999999999999984 554 3 47888888888999999999999999772
Q ss_pred CCCCchHHHHHHHHH-hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----
Q 037404 443 GILPQVEHYGCMIDL-LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG---- 515 (605)
Q Consensus 443 ~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---- 515 (605)
.+.+...+...+.. +...|+.++|.++|++. ...| +...|..++..+.+.|+.++|+.+|++++...|.++.
T Consensus 386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 22233444333322 34689999999999987 3334 5788999999999999999999999999998777665
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+|...+......|+.+.+..+.+++.+.-
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78788888889999999999999998754
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=6.4e-18 Score=165.10 Aligned_cols=260 Identities=11% Similarity=-0.028 Sum_probs=207.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Q 037404 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMY 356 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 356 (605)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 347778888888888888888888888764 4456778888888888888888888888887765 33577888888888
Q ss_pred HhcCChHHHHHHHhcCCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHh
Q 037404 357 AKCGSLDNAMSVFNGMTKKD-------------LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLCAC 422 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~ 422 (605)
...|++++|...|+++...+ ...+..+...+...|++++|+..++++.+.... ++..++..+...+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 88999999988888776321 123344578889999999999999999986422 1578899999999
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|...++++.+ ..+.+..++..++..|...|++++|.+.|+++ ...| +..++..++.+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988 34556889999999999999999999999988 3334 4788999999999999999999
Q ss_pred HHHHHHHhhcCC------------CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 501 EVLDCLIRLKGS------------DPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 501 ~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
..++++++..|. +..++..++.++...|+.+.+....++-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999999876 3678999999999999999998887653
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.3e-17 Score=159.08 Aligned_cols=284 Identities=10% Similarity=0.099 Sum_probs=123.2
Q ss_pred hcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCC
Q 037404 162 KCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIP 241 (605)
Q Consensus 162 ~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 241 (605)
+.| ++++|.+.++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++...
T Consensus 15 ~~~--~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 15 HIG--NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc--CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 445 778888888887554 37888888888888888888888654 566678888888888888888888766555
Q ss_pred C--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037404 242 H--RNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILA 319 (605)
Q Consensus 242 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 319 (605)
+ +++.+.+.++.+|.+.|+++++.++++. ++..+|..++..|...|++++|...|..+ ..|..+..
T Consensus 89 k~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~ 156 (449)
T 1b89_A 89 KKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred HhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence 3 3456778888888888888888777753 55567888888888888888888888765 35777888
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
++.+.|+++.|.+.+..+ .++.+|..++.+|+..|+++.|......+. .++.-...++..|.+.|++++|+.+
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888777 267788888888888888888877666654 4444455678888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcc--cCCHHHHHHHHHHhHHhhCCCC------chHHHHHHHHHhhhcCCHHHHHHHH
Q 037404 400 FSRMKDEGFGPDKYTFVGVLCACTH--AGFIDKGVQYFYSMERDYGILP------QVEHYGCMIDLLGRSGRLKEALRLV 471 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 471 (605)
++...... +-....|+.+..+|++ .++..+.++.|..- .+++| +...|..+...|...++++.|...+
T Consensus 230 Le~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 230 LEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 88776543 2334455555544443 34444444444322 23444 4667888888899999999888766
Q ss_pred HhC
Q 037404 472 QSM 474 (605)
Q Consensus 472 ~~~ 474 (605)
-+-
T Consensus 306 ~~h 308 (449)
T 1b89_A 306 MNH 308 (449)
T ss_dssp HHS
T ss_pred HhC
Confidence 554
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=2.2e-17 Score=158.54 Aligned_cols=259 Identities=11% Similarity=-0.026 Sum_probs=196.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|+++.|...++.+.+.. +.+...+..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 5556666666677777777777666643 2345556666666667777777777777666653 2345666667777777
Q ss_pred cCChHHHHHHHhcCCC---CChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTK---KDLVSWNAM--------------LY-GLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLC 420 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~---~~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 420 (605)
.|++++|.+.++++.. .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 7777777777765542 222233222 22 3677789999999999998864 346788889999
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
.+...|++++|...++++.+ ..+.+...+..++..+...|++++|.+.++++ .. +.+...+..++..+...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999999987 24456788999999999999999999999987 33 3457789999999999999999
Q ss_pred HHHHHHHHHhhcCC------------CCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 499 AEEVLDCLIRLKGS------------DPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 499 A~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
|...++++.+..|. ++..+..++.++.+.|++++|..++++..+
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999998 788999999999999999999999876654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.78 E-value=4.3e-17 Score=165.29 Aligned_cols=356 Identities=12% Similarity=0.015 Sum_probs=199.3
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhcC-----------CC-CcchHHHHHHHHHcCCChHHHHHHHHhCCC----------
Q 037404 185 SWNSMIAGLVKGGELSEARRLFDEMP-----------ER-DAVSWNTILDGYAKAGEMNLAFELFEKIPH---------- 242 (605)
Q Consensus 185 ~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------- 242 (605)
.|+.+...+...|++++|++.|++.. .| ...+|..+..+|...|++++|...+++..+
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 34555555555555555555554430 11 223555566666666666666655544321
Q ss_pred -CChhHHHHHHHHHHhc--CCHHHHHHHHhhCCCC---CcccHHHHHHH---HHhCCChHHHHHHHHHHHHcCCCCCHHH
Q 037404 243 -RNIVSWSTMVWGYSKD--GDMEMAKLLFDRMPAK---TLVPWTIIISG---YAEKGMAKEAARLYDQMEEAGLKPDDGT 313 (605)
Q Consensus 243 -~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~---~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 313 (605)
....++..+..++... +++++|...|++..+. ++..+..+... +...++.++|++.+++..+.. +.+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHH
Confidence 1224455544444443 3567777777765432 22223333333 334566677777777776643 223344
Q ss_pred HHHHHHHHH----ccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 314 LISILAACA----ESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 314 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
+..+...+. ..++.+.|.+.++...... +.+..++..+...|...|++++|...+++.. +.+..++..+...
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 290 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 444433333 3456677777777776654 3355667777777788888888887777655 3344555555554
Q ss_pred HHH-------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 387 LAM-------------------HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 387 ~~~-------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
|.. .+.+++|...+++..+.. +.+..++..+...+...|++++|...|+++... ...+.
T Consensus 291 y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~~~~ 368 (472)
T 4g1t_A 291 YRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK-ELTPV 368 (472)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CCCHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CCCCh
Confidence 432 233567888888877643 234456777888899999999999999988762 32222
Q ss_pred h--HHHHHHHH-HhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 448 V--EHYGCMID-LLGRSGRLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 448 ~--~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
. ..+..+.. .+...|+.++|++.|++. .+.|+..... +..+.+..++++.++.+|.++.++..++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 12333333 234678999999999887 5556543322 223455677888888899999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCCceeE
Q 037404 524 FAATGDWNKVANVRLQMKKTRAQKPSGASS 553 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 553 (605)
|...|++++|++.++++.+.+...+...+|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHCC----------------------
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999987655444444
No 29
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.77 E-value=1.7e-17 Score=162.25 Aligned_cols=258 Identities=12% Similarity=0.038 Sum_probs=166.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAK---TLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
.+..+...+...|++++|...|+++.+. +...|..+...+...|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN 144 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3444455555555555555555544322 22224555555555555555555555555542 2244455555555555
Q ss_pred cCchHHHHHHHHHHHHcCCCCChhHH---------------HHHHHHHHhcCChHHHHHHHhcCC---CC--ChhHHHHH
Q 037404 324 SGLLGLGMKVHASINKYRFKCNTNVC---------------NALVDMYAKCGSLDNAMSVFNGMT---KK--DLVSWNAM 383 (605)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~---------------~~l~~~~~~~g~~~~A~~~~~~~~---~~--~~~~~~~l 383 (605)
.|++++|...++.+.+.......... ..+.. +...|++++|...|+++. +. +..++..+
T Consensus 145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555555544322111111 02233 337788888888887665 22 46778888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...|...|++++|+..++++.+.. +.+..++..+..++...|++++|...++++.+. .+.+...+..++..|.+.|+
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCC
Confidence 888888888888888888888753 335677888888888889999999888888772 34567788888888889999
Q ss_pred HHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 464 LKEALRLVQSM-PVEP------------NAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+++|.+.|+++ ...| ...+|..+..++...|++++|..++.+.++.
T Consensus 301 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 301 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 99998888876 1111 1578888999999999999998888765553
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=4e-17 Score=152.84 Aligned_cols=247 Identities=11% Similarity=0.065 Sum_probs=202.9
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDD--GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG 360 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 360 (605)
++-....|++..|+..++.... ..|+. .....+..+|...|+++.|...++. .-+|+..++..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 4455678999999999887644 34543 3446678899999999999876644 23556778888999999999
Q ss_pred ChHHHHHHHhcCC-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 037404 361 SLDNAMSVFNGMT-----KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 361 ~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
+.++|.+.++++. +.+...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|.+.+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 23567778888999999999999999987 457788999999999999999999999
Q ss_pred HHhHHhhCCCCchHH---HHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 436 YSMERDYGILPQVEH---YGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.++.++.+.|++++|+..++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999883 344321 123345555669999999999998 345678899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHH-HHHHHHHHHhCC
Q 037404 511 GSDPGNYTMLSNIFAATGDWNK-VANVRLQMKKTR 544 (605)
Q Consensus 511 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 544 (605)
|+++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999986 578999998853
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.9e-15 Score=155.25 Aligned_cols=408 Identities=12% Similarity=0.059 Sum_probs=284.3
Q ss_pred CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHH
Q 037404 77 DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSL 156 (605)
Q Consensus 77 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 156 (605)
+.+...|..++. +.+.|++++|..+|+++.+. .+-+...+...+..+.+.|+++.|..+|+.+++.. |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 346778998898 57899999999999999986 34466678888999999999999999999998864 566677777
Q ss_pred HHHH-HhcCCCChHHHHH----HHhccC-----C-CCeehHHHHHHHHHh---------CCChhHHHHHHhhcCC-CCc-
Q 037404 157 IDSY-SKCGVVGVSLAKK----LFMSMG-----E-RDIVSWNSMIAGLVK---------GGELSEARRLFDEMPE-RDA- 214 (605)
Q Consensus 157 ~~~~-~~~g~~~~~~a~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~-~~~- 214 (605)
+... ...| +.+.|.+ +|+... . .+...|...+....+ .|+++.|..+|++.+. |+.
T Consensus 86 ~~~~~~~~~--~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~ 163 (530)
T 2ooe_A 86 LSYVRETKG--KLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN 163 (530)
T ss_dssp HHHHHHHTT--TSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHHHHHHcc--chhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh
Confidence 6533 3456 6666554 665432 1 345678877776655 6899999999999854 322
Q ss_pred --chHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh-------CC------CCC----
Q 037404 215 --VSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR-------MP------AKT---- 275 (605)
Q Consensus 215 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~------~~~---- 275 (605)
..|..........|. ..+..++.. +.++++.|..++.. +. .+.
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~~l~~-----------------~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKKMIED-----------------RSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHHHT-----------------THHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHHHHHhhch-hHHHHHHHH-----------------hhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 122221111100110 111111111 22334444443332 11 111
Q ss_pred ----cccHHHHHHHHHhC----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-------cCchH-------H
Q 037404 276 ----LVPWTIIISGYAEK----GMA----KEAARLYDQMEEAGLKPDDGTLISILAACAE-------SGLLG-------L 329 (605)
Q Consensus 276 ----~~~~~~l~~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~ 329 (605)
...|...+...... ++. .++..+|++.+... +.+...|......+.+ .|+++ .
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 11244444332221 232 47788999988752 4456677777776664 68887 8
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC--CC-Ch-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT--KK-DL-VSWNAMLYGLAMHGQGEKALGLFSRMKD 405 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 405 (605)
|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|++++|..+|++..+
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998863334568889999999999999999999999876 33 33 4788899999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHH-hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-
Q 037404 406 EGFGPDKYTFVGVLCA-CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN- 479 (605)
Q Consensus 406 ~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~- 479 (605)
.. +.+...+...... +...|+.++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|+++ +..|+
T Consensus 385 ~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp CT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred cc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 52 2233333332222 34689999999999999884 3446788999999999999999999999987 22332
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 480 -AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 480 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
...|...+......|+.+.+..+..++.+..|.
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 457888888888999999999999999998874
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1e-16 Score=156.56 Aligned_cols=232 Identities=10% Similarity=0.027 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 310 DDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 310 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++. +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999876 3468889999999999999999999999876 4567899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDK-----------YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
|...|++++|+..++++.+. .|+. ..+..+...+...|++++|...++++.+.....++..++..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999874 3332 2233457789999999999999999988422222688999999
Q ss_pred HHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
..|...|++++|.+.++++ .. +.+..+|..++.++...|++++|+..++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999988 33 346789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 037404 534 ANVRLQMKKTR 544 (605)
Q Consensus 534 ~~~~~~~~~~~ 544 (605)
...++++.+..
T Consensus 301 ~~~~~~al~~~ 311 (365)
T 4eqf_A 301 VSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999998854
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.71 E-value=1.8e-16 Score=152.13 Aligned_cols=259 Identities=8% Similarity=-0.028 Sum_probs=161.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
+..+...+...|++++|..+|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 33444444444555555544444322 122224445555555555555555555555542 22344555555555555
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHH--------------HH-HHHhcCChHHHHHHHhcCC---CCChhHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNAL--------------VD-MYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYG 386 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 386 (605)
|+++.|...++.+.+.... +...+..+ .. .+...|++++|...++++. +.+...+..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 5555555555555544321 11222222 22 3566677777777777654 3456777777888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+ ..+.+...+..++..|.+.|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHH
Confidence 888888888888888877753 33566777788888888888888888888876 234456777888888888888888
Q ss_pred HHHHHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 467 ALRLVQSM-PVEP-------------NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 467 A~~~~~~~-~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
|.+.++++ ...| +...+..+..++...|++++|..+++++++..|
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 88888776 2223 356777888888888888888888877666543
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.70 E-value=1e-15 Score=136.89 Aligned_cols=196 Identities=11% Similarity=-0.024 Sum_probs=155.3
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037404 343 KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVL 419 (605)
Q Consensus 343 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 419 (605)
+++...+..+...+.+.|++++|...|++.. +.++..|..+...+.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4566777888888889999999999988765 4466788888899999999999999999988853 33567788888
Q ss_pred HHhccc-----------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 037404 420 CACTHA-----------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTLL 487 (605)
Q Consensus 420 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 487 (605)
.++... |++++|+..++++.+ ..+.+...+..+...|...|++++|++.|+++ ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 999999999999987 23446788899999999999999999999987 2227788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.++...|++++|+..++++++.+|+++.++..++.++...|++++|++.+++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999988654
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.9e-15 Score=138.17 Aligned_cols=217 Identities=10% Similarity=-0.045 Sum_probs=162.4
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC---CC-------hhHHHHH
Q 037404 314 LISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK---KD-------LVSWNAM 383 (605)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~-------~~~~~~l 383 (605)
+..+...+...|++++|...+..+.+.. .+...+..+..++...|++++|...+++... .+ ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3344444445555555555555544444 3445555555566666666666666555441 11 4667778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR 463 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (605)
...|...|++++|...|+++.+. .|+.. .+...|++++|...++.+.. ..+.+...+..++..+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888874 45532 45566788999999998876 344456788889999999999
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 464 LKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 464 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+++|.+.++++ . .+.+...+..++.++...|++++|...++++++..|.++..+..++.++...|++++|.+.++++.
T Consensus 155 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999987 2 234577889999999999999999999999999999999999999999999999999999999998
Q ss_pred hC
Q 037404 542 KT 543 (605)
Q Consensus 542 ~~ 543 (605)
+.
T Consensus 235 ~~ 236 (258)
T 3uq3_A 235 TK 236 (258)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=3.4e-15 Score=137.70 Aligned_cols=234 Identities=13% Similarity=-0.016 Sum_probs=181.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--C----hhHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKC--N----TNVCNAL 352 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l 352 (605)
|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+..... + ..++..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 5556667777777777777777777765 566777777777777788888877777766543211 1 4677788
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a 431 (605)
...+...|++++|...|+++...++. ...+...|++++|...++++... .| +...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHH
Confidence 88888888888888888876632211 24566678899999999998885 34 446778888889999999999
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
...++++.. ..+.+...+..++..|...|++++|.+.++++ .. +.+...+..++.++...|++++|...++++++.
T Consensus 159 ~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 159 VKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999987 34556788999999999999999999999987 33 345778999999999999999999999999999
Q ss_pred c------CCCCchHHHHHHH
Q 037404 510 K------GSDPGNYTMLSNI 523 (605)
Q Consensus 510 ~------p~~~~~~~~l~~~ 523 (605)
. |.+..++..+..+
T Consensus 237 ~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 237 DAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHTTTTHHHHHHHHHHT
T ss_pred ChhhcCCCchHHHHHHHHHh
Confidence 8 7777766666543
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=5.6e-15 Score=149.67 Aligned_cols=376 Identities=10% Similarity=-0.051 Sum_probs=200.7
Q ss_pred CcccHHHHHHHhhccCCHHHHHHHHHHHHHh-----C--CCC-CcchhhHHHHHHHhcCCCChHHHHHHHhccCC-----
Q 037404 114 DNFTYPFLLKACNGKNWFHLVQMIHALIYKC-----G--YFG-DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE----- 180 (605)
Q Consensus 114 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~----- 180 (605)
....|+.+...+...|+.++|.+.+++.++. + ..| ...+|+.+...|...| ++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--RLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHhHhc
Confidence 4456788888888889999999988887653 1 122 2346777888888888 88888777765421
Q ss_pred --C----CeehHHHHHHHHHh--CCChhHHHHHHhhc--CCCC-cchHHHHHHH---HHcCCChHHHHHHHHhCCC---C
Q 037404 181 --R----DIVSWNSMIAGLVK--GGELSEARRLFDEM--PERD-AVSWNTILDG---YAKAGEMNLAFELFEKIPH---R 243 (605)
Q Consensus 181 --~----~~~~~~~li~~~~~--~g~~~~A~~~~~~~--~~~~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~---~ 243 (605)
+ ...++..+..++.. .+++++|+..|++. ..|+ ...+..+..+ +...++.++|++.+++..+ .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 12234444444443 34577788877777 3443 2233333322 3345566666666655432 2
Q ss_pred ChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCC-HHHHH
Q 037404 244 NIVSWSTMVWGYSK----DGDMEMAKLLFDRMPA---KTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPD-DGTLI 315 (605)
Q Consensus 244 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~ 315 (605)
+..++..+...+.. .+++++|.+.+++... .....+..+...|...|++++|+..+++..+. .|+ ...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 33444444444333 3455666666665432 22233566666666677777777777666654 233 33333
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 392 (605)
.+..+|...+.... ... ...........+..+.|...+++.. +.+...+..+...|...|+
T Consensus 286 ~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 33333321111000 000 0000000111233566777776654 4466788899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKY--TFVGVLC-ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
+++|+..|++..+....+... .+..+.. .....|+.++|+..|++..+ +.|+....... ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 999999999998864333221 2222222 24578999999999999876 34543322222 223334
Q ss_pred HHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 470 LVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 470 ~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
++++. . .+.+..+|..++.++...|++++|++.|+++++..|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 44433 1 2345778999999999999999999999999999999888776665
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=4.2e-17 Score=167.87 Aligned_cols=147 Identities=11% Similarity=0.101 Sum_probs=122.1
Q ss_pred CcchHHHHHHHhccCChhHHHHHhcccC-------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 037404 49 PYIAPKLISSLALCRQMGLAIKVFNDIQ-------DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFL 121 (605)
Q Consensus 49 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 121 (605)
..+||+||++||++|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999997753 699999999999999999999999999999999999999999999
Q ss_pred HHHhhccCC-HHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC-----CCeehHHHHHHHHHh
Q 037404 122 LKACNGKNW-FHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE-----RDIVSWNSMIAGLVK 195 (605)
Q Consensus 122 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~ 195 (605)
|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+ -++.+.++...+.. +.+.+...|.+.|.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~--vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT--VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH--HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH--HHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999997 4789999999999999999999999998886655 33333333222221 123455556666766
Q ss_pred CC
Q 037404 196 GG 197 (605)
Q Consensus 196 ~g 197 (605)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=1.5e-14 Score=134.91 Aligned_cols=241 Identities=8% Similarity=-0.072 Sum_probs=187.1
Q ss_pred hCCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLK---PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDN 364 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 364 (605)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 457788888888888875321 134567777788888888888888888888765 3367788889999999999999
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 365 AMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 365 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
|...|+++. +.+...+..+...|...|++++|...++++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999998776 446788999999999999999999999999885 455444444555567779999999999888773
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
.+++...+. ++..+...++.++|.+.++++ ...|+ ...+..++..+...|++++|...++++++.+|.+..
T Consensus 174 --~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 344444444 677778888899999999887 33332 467888999999999999999999999999987754
Q ss_pred hHHHHHHHHHhcCChHHHHHHH
Q 037404 516 NYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
. .+.++...|++++|++.+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 3 467888899999998876
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.64 E-value=2.4e-14 Score=133.27 Aligned_cols=243 Identities=9% Similarity=-0.080 Sum_probs=125.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhc
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN--TNVCNALVDMYAKC 359 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 359 (605)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+....++ ...+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 3344444444444444444444431 11222344444444444444444444444444211111 12244555555555
Q ss_pred CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHH
Q 037404 360 GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFY 436 (605)
Q Consensus 360 g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 436 (605)
|++++|...|++.. +.+...|..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++|...++
T Consensus 88 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555443 2344455555555555566666665555555431 2233444444422333346666666666
Q ss_pred HhHHhhCCCCchHHHHHHHHHhhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 437 SMERDYGILPQVEHYGCMIDLLGRSGR---LKEALRLVQSM----PVEPN------AIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
++.+. .+.+...+..+...+...|+ +++|...++++ ...|+ ..++..+...+...|++++|...+
T Consensus 167 ~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 167 KVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66552 22334555555555555555 55555555544 11122 246777888888999999999999
Q ss_pred HHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 504 DCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+++++.+|+++.+...+..+....+
T Consensus 245 ~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 245 KNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999988888877665544
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.62 E-value=4.2e-14 Score=141.31 Aligned_cols=342 Identities=12% Similarity=0.030 Sum_probs=203.4
Q ss_pred HHHHHHhCCChhHHHHHHhhcCC-CCcchHHHHHHHHHcCCCh---HHHHHHHHhCCCCChhHHHHHHHHHHhcC-----
Q 037404 189 MIAGLVKGGELSEARRLFDEMPE-RDAVSWNTILDGYAKAGEM---NLAFELFEKIPHRNIVSWSTMVWGYSKDG----- 259 (605)
Q Consensus 189 li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~----- 259 (605)
+...+.+.|++++|+.+|++..+ .+...+..+...|...|+. ++|..+|++..+.+...+..|..++...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34444555666666666665522 2333444444445555555 66666666666555555666666444444
Q ss_pred CHHHHHHHHhhCCCCC-cccHHHHHHHHHhCCCh---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKT-LVPWTIIISGYAEKGMA---KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHA 335 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 335 (605)
++++|...|++..+++ ...+..|...|...+.. .++...+....+.| +......+...|...+.++.+.....
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 5667777776655433 33466666666655443 33444555554444 23344555566666665544444433
Q ss_pred HHHHcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCC---CChhHHHHHHHHHHHc----CChHHHHHHHHHHHH
Q 037404 336 SINKYRFKCNTNVCNALVDMYAKCG---SLDNAMSVFNGMTK---KDLVSWNAMLYGLAMH----GQGEKALGLFSRMKD 405 (605)
Q Consensus 336 ~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~ 405 (605)
.+.+.-...++..+..|..+|...| +.++|.+.|++..+ ++...+..+...|... +++++|+.+|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa- 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA- 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-
Confidence 3332222234447777888888888 88888888876653 2333335666666544 68888999888876
Q ss_pred CCCCCCHHHHHHHHHH-h--cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-----CHHHHHHHHHhCCCC
Q 037404 406 EGFGPDKYTFVGVLCA-C--THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG-----RLKEALRLVQSMPVE 477 (605)
Q Consensus 406 ~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~ 477 (605)
.| +...+..+... + ...+++++|..+|++..+ .| +...+..|...|. .| ++++|.+.|++.- .
T Consensus 245 ~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~ 315 (452)
T 3e4b_A 245 PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G 315 (452)
T ss_dssp GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T
T ss_pred CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C
Confidence 33 34444555544 3 458889999999988876 23 5667777777776 55 8999999999887 6
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037404 478 PNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 478 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 545 (605)
.++.....+...|.. ..++++|...++++.+ +.++..+..|+.+|.. ..+.++|..++++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 677777788877765 3489999999998876 4567788889988875 3588899999999888764
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=1.1e-13 Score=127.16 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=153.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556667777777788888887777654 3456777778888888888888888888887753 33566777788888
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
...|++++|..+++++.. .+..| +...+..++..+...|++++|.+.++++ .. +.+...+..++..+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888765 23344 4667778888888888888888888876 22 33567788888888888999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...++++.+..|.++..+..++.++...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999888888888888888888889999999999998888754
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=5.8e-13 Score=123.90 Aligned_cols=221 Identities=14% Similarity=0.008 Sum_probs=152.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CChhHHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAK----CGSLDNAMSVFNGMTK-KDLVSWNAMLYGL 387 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~ 387 (605)
.+..+...+...|++++|...++...+.+ +...+..+...|.. .+++++|...|++..+ .++..+..+...|
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~ 84 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 33344444444445555555555444421 33445555555555 6666666666655442 2455666666677
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 388 AM----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH----AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 388 ~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...+++..+ .+ +...+..+...|.
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHH
Confidence 77 777778888887777754 56667777777777 7888888888888776 23 4556677777777
Q ss_pred h----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh----c
Q 037404 460 R----SGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA----T 527 (605)
Q Consensus 460 ~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 527 (605)
. .+++++|.+.|++.-...+...+..+...+.. .+++++|...++++.+..| +..+..++.+|.. .
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcc
Confidence 7 78888888888876212356777778888888 8899999999998888755 6678888889988 8
Q ss_pred CChHHHHHHHHHHHhCCC
Q 037404 528 GDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~~~ 545 (605)
|++++|.+.+++..+.+.
T Consensus 236 ~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCSTTHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHcCC
Confidence 899999999998888653
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=2.6e-14 Score=130.40 Aligned_cols=197 Identities=11% Similarity=0.071 Sum_probs=145.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
....+..+...+...|++++|...|+++. +.+...+..+...|...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 44556667777788888888888887664 3356777888888888888999998888888753 3366778888888
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999888772 3456777888888889999999999998887 2 234577888888889999999999
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 500 EEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...++++.+..|.++.++..++.+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999889888899999999999999999999999988753
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=2.1e-13 Score=122.72 Aligned_cols=197 Identities=10% Similarity=-0.028 Sum_probs=150.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
+...+..+...+...|++++|...|+++. +.+...+..+...|...|++++|...++++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 34556666677777777777777776554 3356677777788888888888888888877753 3356677778888
Q ss_pred hccc-CCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHH
Q 037404 422 CTHA-GFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVE 497 (605)
Q Consensus 422 ~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~ 497 (605)
+... |++++|...++++.+ .+..| +...+..++..+...|++++|.+.++++ ... .+...+..++..+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 8888 888888888888876 23333 3567778888888888888888888876 222 34677888888888889999
Q ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 498 LAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 498 ~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|...++++.+..| .++..+..++.++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999888888 88888888888888889999998888888764
No 46
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=155.99 Aligned_cols=125 Identities=17% Similarity=0.152 Sum_probs=104.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT-------KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
-..+|+++|++|++.|++++|.++|.+|. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34678889999999999999998886643 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCC-HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 418 VLCACTHAGF-IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 418 ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+|.++++.|+ .++|.++|++|.. .|+.||..+|++++....+.+-++...++
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999887 4788899999998 59999999999888766665444333333
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.58 E-value=8.2e-14 Score=139.23 Aligned_cols=311 Identities=11% Similarity=0.018 Sum_probs=220.4
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCH---HHHHHHHhhCCCCCcccHHHHHHHHHhCC----
Q 037404 219 TILDGYAKAGEMNLAFELFEKIPH-RNIVSWSTMVWGYSKDGDM---EMAKLLFDRMPAKTLVPWTIIISGYAEKG---- 290 (605)
Q Consensus 219 ~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---- 290 (605)
.+...+.+.|++++|.++|++..+ .+...+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 356677888999999999988754 4556677777888888888 99999999988776666888888666655
Q ss_pred -ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchH---HHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC----h
Q 037404 291 -MAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLG---LGMKVHASINKYRFKCNTNVCNALVDMYAKCGS----L 362 (605)
Q Consensus 291 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~ 362 (605)
++++|+..|++..+.|.. + .+..+...|...+..+ .+.+.+......| ++.....+...|...+. .
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 788999999999997633 3 4555666666555433 3444555555544 45677778888888884 4
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc----CCHHHHHHHH
Q 037404 363 DNAMSVFNGMTKKDLVSWNAMLYGLAMHG---QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA----GFIDKGVQYF 435 (605)
Q Consensus 363 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----g~~~~a~~~~ 435 (605)
+.+..+++.....++..+..+...|...| ++++|+..|++..+.| .++...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 55556666767777889999999999999 9999999999999987 56666656677677655 7999999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHH-h--hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 037404 436 YSMERDYGILPQVEHYGCMIDL-L--GRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHN-----AVELAEEVLDCLI 507 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~ 507 (605)
++.. +-+...+..+... | ...+++++|.+.|++.-...+...+..+...|. .| ++++|...|+++.
T Consensus 241 ~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9985 3456677777776 4 568999999999998832347778888888887 55 9999999999988
Q ss_pred hhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 037404 508 RLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 545 (605)
|.++..+..|+.+|.. ..++++|..++++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 8889999999999987 3499999999999998764
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=1.6e-13 Score=127.65 Aligned_cols=228 Identities=11% Similarity=0.031 Sum_probs=188.1
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCh----hHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KDL----VSWNAMLYG 386 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~ 386 (605)
.+......+...|+++.|...++.+.+... .+...+..+..+|...|++++|...++++.. ++. .+|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 345567788899999999999999988753 3566888899999999999999999987764 333 348899999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
|...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+ ..+.+...+..++..+...+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999853 33567889999999999999999999999976 344467778888834445569999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhc---CCC-----CchHHHHHHHHHhcCChHHH
Q 037404 467 ALRLVQSM-PVEP-NAIIWGTLLGACRKHNA---VELAEEVLDCLIRLK---GSD-----PGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 467 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A 533 (605)
|.+.|+++ ...| +...+..+..++...|+ +++|...++++.+.. |+. ..++..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999988 3334 46778888888888888 888999999999875 442 25788899999999999999
Q ss_pred HHHHHHHHhCC
Q 037404 534 ANVRLQMKKTR 544 (605)
Q Consensus 534 ~~~~~~~~~~~ 544 (605)
.+.++++.+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999854
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.58 E-value=2.3e-13 Score=131.55 Aligned_cols=244 Identities=10% Similarity=0.082 Sum_probs=185.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc-hHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL-LGLGMKVHASINKYRFKCNTNVCNALVDMYA 357 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 357 (605)
|..+...+...|++++|+..++++++.. +-+...|..+..++...|+ +++|...++.+.+... .+...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 5666667777777788888887777753 2345566677777777775 8888888877777653 36777888888888
Q ss_pred hcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-cCCHHHH--
Q 037404 358 KCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKG-- 431 (605)
Q Consensus 358 ~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a-- 431 (605)
..|++++|+..|+++. +.+...|..+..++...|++++|+..++++++.. +-+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHH
Confidence 8888888888888766 4567888888888888999999999999988853 2356778888888887 5554666
Q ss_pred ---HHHHHHhHHhhCCCCchHHHHHHHHHhhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---------CH
Q 037404 432 ---VQYFYSMERDYGILPQVEHYGCMIDLLGRSG--RLKEALRLVQSMPVEP-NAIIWGTLLGACRKHN---------AV 496 (605)
Q Consensus 432 ---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g---------~~ 496 (605)
+..+++++. -.+-+...|..+...+...| ++++|.+.+.++...| +...+..++..+.+.| .+
T Consensus 257 ~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 477888876 23446778888888888888 6889998888774444 4668888888888764 35
Q ss_pred HHHHHHHHHH-HhhcCCCCchHHHHHHHHHhc
Q 037404 497 ELAEEVLDCL-IRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 497 ~~A~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 527 (605)
++|+.+++++ .+.+|.....|..++..+...
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 8999999999 899999999999888876543
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=4.7e-14 Score=128.71 Aligned_cols=209 Identities=11% Similarity=0.003 Sum_probs=143.1
Q ss_pred HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC
Q 037404 316 SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ 392 (605)
Q Consensus 316 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 392 (605)
.+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...++++. +.+...+..+...|...|+
T Consensus 28 ~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 106 (243)
T 2q7f_A 28 QQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEM 106 (243)
T ss_dssp --------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhcc
Confidence 33334444444444444444444322 2234555556666666666666666666544 3356677777888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHH
Q 037404 393 GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQ 472 (605)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 472 (605)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+ ..+.+...+..++..+.+.|++++|.+.++
T Consensus 107 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 183 (243)
T 2q7f_A 107 YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVE--LNENDTEARFQFGMCLANEGMLDEALSQFA 183 (243)
T ss_dssp HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888753 34667788888888899999999999998877 234567788889999999999999999998
Q ss_pred hC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 473 SM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 473 ~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
++ . .+.+..++..++.++...|++++|...++++.+..|+++..+..++.+....|
T Consensus 184 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 184 AVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 87 2 23457788999999999999999999999999999999988887766554433
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=5.2e-13 Score=122.55 Aligned_cols=203 Identities=13% Similarity=-0.044 Sum_probs=149.8
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAM 389 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 389 (605)
.+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++. +.+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence 34444445555555555555555555443 2245556666666777777777777776554 3356677777888888
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHH
Q 037404 390 HGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEAL 468 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 468 (605)
.|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888887733445 3456777888888999999999999988772 3446778888999999999999999
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 469 RLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 469 ~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
+.++++ .. +.+...+..+...+...|++++|.+.++++.+..|+++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999887 33 345677888889999999999999999999999999876554
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.57 E-value=2.2e-13 Score=118.36 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=143.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMI 455 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 455 (605)
+...|..+...|...|++++|+..|++..+.. +-+..++..+..++...|++++|...+..+.. ..+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 56678888899999999999999999988853 23567788888899999999999999999877 3445667788888
Q ss_pred HHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKV 533 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 533 (605)
..+...++++.|.+.+.+. .. +.+...+..++..+...|++++|++.++++++.+|.++.++..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 32 345778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 037404 534 ANVRLQMKKTR 544 (605)
Q Consensus 534 ~~~~~~~~~~~ 544 (605)
++.++++.+..
T Consensus 161 ~~~~~~al~~~ 171 (184)
T 3vtx_A 161 VKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhCC
Confidence 99999999854
No 53
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.56 E-value=5.7e-14 Score=139.43 Aligned_cols=262 Identities=11% Similarity=-0.014 Sum_probs=182.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHc----C-CCCChhHHHH
Q 037404 281 IIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLISILAACAESGLLGLGMKVHASINKY----R-FKCNTNVCNA 351 (605)
Q Consensus 281 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 351 (605)
.+...+...|++++|+..|+++.+.+. .+. ..+..+...+...|+++.|...++.+.+. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 345556666666666666666666421 122 24555666666667777777666665432 1 1122355666
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 037404 352 LVDMYAKCGSLDNAMSVFNGMTKK---------DLVSWNAMLYGLAMHGQ-----------------GEKALGLFSRMKD 405 (605)
Q Consensus 352 l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 405 (605)
+...|...|++++|...+++.... ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 777777777777777777655421 23467777778888888 8888888877654
Q ss_pred C----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-C
Q 037404 406 E----GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-P 475 (605)
Q Consensus 406 ~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 475 (605)
. +-.+ ...++..+...+...|++++|...++++.+...-.++ ...+..++..|...|++++|.+.++++ .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1112 2246777888899999999999999888763211112 237788899999999999999999876 1
Q ss_pred C---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 476 V---EP----NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 476 ~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
. .. ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+++++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 11 14577888899999999999999999999875433 34788999999999999999999999987
Q ss_pred C
Q 037404 543 T 543 (605)
Q Consensus 543 ~ 543 (605)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 4
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=2e-13 Score=132.03 Aligned_cols=227 Identities=13% Similarity=0.103 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC-hHHHHHHHhcCC---CCChhHHHHHHHHH
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGS-LDNAMSVFNGMT---KKDLVSWNAMLYGL 387 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~l~~~~ 387 (605)
..+..+...+...|++++|...+..+.+... -+..+|+.+..++...|+ +++|+..|+++. +.+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 4566777788899999999999999998763 467889999999999997 999999999876 45778999999999
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh-cCCHHH
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR-SGRLKE 466 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 466 (605)
...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++++++ -.+-+...|+.+..++.+ .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999853 33678899999999999999999999999988 344578899999999999 666577
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC---------
Q 037404 467 A-----LRLVQSM-PVEP-NAIIWGTLLGACRKHN--AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG--------- 528 (605)
Q Consensus 467 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------- 528 (605)
| ++.++++ .+.| +...|..+...+...| ++++|.+.+.++ +.+|+++.++..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4777776 3344 4678888888888888 689999999998 888999999999999999875
Q ss_pred ChHHHHHHHHHH-HhC
Q 037404 529 DWNKVANVRLQM-KKT 543 (605)
Q Consensus 529 ~~~~A~~~~~~~-~~~ 543 (605)
.+++|+++++++ .+.
T Consensus 333 ~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 333 ILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 258999999998 663
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.55 E-value=1.2e-12 Score=117.58 Aligned_cols=205 Identities=11% Similarity=-0.058 Sum_probs=148.0
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHH
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAM 389 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~ 389 (605)
.+..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|.+.++++. +.+...+..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 88 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG 88 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444445555555555555555554433 2234556666666666777777777666554 3356677778888888
Q ss_pred c-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHH
Q 037404 390 H-GQGEKALGLFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEA 467 (605)
Q Consensus 390 ~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 467 (605)
. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence 8 888888888888887333443 466777888888999999999999988772 344577888899999999999999
Q ss_pred HHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 468 LRLVQSM-PV-E-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 468 ~~~~~~~-~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
.+.++++ .. + .+...+..+...+...|+.+.|..+++.+.+..|+++.....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 9999887 22 2 4566777777888899999999999999999999988765544
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=4.4e-13 Score=119.66 Aligned_cols=111 Identities=18% Similarity=0.068 Sum_probs=45.4
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
|++++|+..+++..+. .| +...+..+..++...|++++|+..|+++.+ .. .+...+..++.+|...|++++|..
T Consensus 98 g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~~~~g~~~~A~~ 172 (217)
T 2pl2_A 98 GYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELYLSMGRLDEALA 172 (217)
T ss_dssp HHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555544442 22 233444444445555555555555555544 12 344444555555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037404 470 LVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCL 506 (605)
Q Consensus 470 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 506 (605)
.|+++ ...| +...+..+...+...|++++|+..++++
T Consensus 173 ~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55544 1122 3344444555555555555555555443
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.2e-13 Score=134.83 Aligned_cols=129 Identities=11% Similarity=-0.056 Sum_probs=68.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCCC----HH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-P---VEPN----AI 481 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~ 481 (605)
++..+...+...|++++|...++++.+...-.++ ...+..++..|...|++++|...+++. . ..++ ..
T Consensus 189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 268 (406)
T 3sf4_A 189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 268 (406)
T ss_dssp HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence 3445555556666666666666555442111111 224555556666666666666666554 0 0111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++..++..+...|++++|...++++.+..+.. +.++..++.+|...|++++|.+.+++..+
T Consensus 269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45555566666666666666666666553322 33555666666666666666666666544
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.54 E-value=1.9e-13 Score=131.33 Aligned_cols=261 Identities=11% Similarity=0.003 Sum_probs=181.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHc----CCC-CChhHHHHH
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGLKPD----DGTLISILAACAESGLLGLGMKVHASINKY----RFK-CNTNVCNAL 352 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 352 (605)
....+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+..+.+. +.. ....++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4455566666666766666666642 112 234555566666667777776666655432 111 124456667
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQ--------------------GEKALGLFSRM 403 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~m 403 (605)
...|...|++++|...+++... .+ ..++..+...|...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777777888888777766541 12 2366777778888888 88888888776
Q ss_pred HHC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 404 KDE----GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 404 ~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
... +-.+ ...++..+...+...|++++|...++++.+.....++ ...+..++..+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 1111 1245777788889999999999999888752111111 337788899999999999999999876
Q ss_pred -C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 475 -P---VEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 475 -~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
. ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 1122 4577788899999999999999999999875433 347889999999999999999999999
Q ss_pred HhC
Q 037404 541 KKT 543 (605)
Q Consensus 541 ~~~ 543 (605)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 875
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.54 E-value=2.5e-12 Score=119.57 Aligned_cols=224 Identities=11% Similarity=-0.002 Sum_probs=174.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCchHHHHHHHHHHHHcCCCCChhHHHHH
Q 037404 277 VPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE----SGLLGLGMKVHASINKYRFKCNTNVCNAL 352 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 352 (605)
..+..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...++...+.+ +...+..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33555666677777777777777777762 234556666667777 777788888777777765 56677777
Q ss_pred HHHHHh----cCChHHHHHHHhcCCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 037404 353 VDMYAK----CGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAM----HGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACT 423 (605)
Q Consensus 353 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 423 (605)
...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 888887 8888888888876653 366778888888888 899999999999988865 5666777777777
Q ss_pred c----cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh--
Q 037404 424 H----AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----SGRLKEALRLVQSM-PVEPNAIIWGTLLGACRK-- 492 (605)
Q Consensus 424 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-- 492 (605)
. .+++++|...+++..+. .+...+..+...|.. .+++++|.+.+++. ... +...+..+...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNGE 232 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCC
Confidence 7 89999999999998872 346778888889988 99999999999987 333 36778888888988
Q ss_pred --cCCHHHHHHHHHHHHhhcCCCC
Q 037404 493 --HNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 493 --~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.+++++|...++++.+..|+++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHHH
Confidence 8999999999999999887643
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.53 E-value=1.4e-13 Score=138.47 Aligned_cols=209 Identities=8% Similarity=-0.042 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL-DNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
++.+...+....... +.+...+..+...+...|++ ++|++.|++.. +.+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444454443322 34667777888888888888 88888888765 44577889999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhccc---------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc--------CCHH
Q 037404 403 MKDEGFGPDKYTFVGVLCACTHA---------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS--------GRLK 465 (605)
Q Consensus 403 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 465 (605)
..+. .|+...+..+..++... |++++|...++++.+ -.+.+...|..++.+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9885 57778888899999999 999999999999988 3445678899999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 466 EALRLVQSM-PVEP----NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 466 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+|++.|+++ ...| +...|..+..++...|++++|...++++++.+|+++.++..++.++...|++++|++.++++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999988 4445 68899999999999999999999999999999999999999999999999999999765443
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=4.1e-13 Score=125.02 Aligned_cols=218 Identities=12% Similarity=0.013 Sum_probs=178.1
Q ss_pred HccCchHHHHHHHHHHHHcCC---CCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHH
Q 037404 322 AESGLLGLGMKVHASINKYRF---KCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEK 395 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~ 395 (605)
...|++++|...++.+.+... +.+..++..+...+...|++++|...|+++. +.+...|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345889999999999987642 1246778889999999999999999999876 4567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 396 ALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 396 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
|+..|+++.+.. +.+...+..+..++...|++++|...++++.+. .|+..........+...|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999863 335678889999999999999999999999873 344444444555567789999999999776
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 475 -PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS----DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 475 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
..+++...+ .++..+...++.++|...++++.+..|. ++..+..++.+|.+.|++++|...++++.+..
T Consensus 172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 223333333 4677778888999999999999887653 36789999999999999999999999999854
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.49 E-value=1.4e-13 Score=136.24 Aligned_cols=254 Identities=9% Similarity=-0.042 Sum_probs=159.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----CCChhH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEA----GLKPD-DGTLISILAACAESGLLGLGMKVHASINKYRF-----KCNTNV 348 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 348 (605)
|..+...+...|++++|...+++.... +..|. ...+..+...+...|+++.|...+..+.+... .....+
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 129 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 129 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 334444444455555555544443321 11111 22334444455555555555555554432210 001234
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCChHHHHHH
Q 037404 349 CNALVDMYAKCGS--------------------LDNAMSVFNGMTK-----K----DLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 349 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+..+...|...|+ +++|...+++... . ...++..+...|...|++++|...
T Consensus 130 ~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 209 (406)
T 3sf4_A 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 209 (406)
T ss_dssp HHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHH
T ss_pred HHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 5555666666666 6666666554331 1 124677778888888999999888
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHH
Q 037404 400 FSRMKDEGF-GPD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 400 ~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+++..+... .++ ..++..+...+...|++++|...++++.....-.++ ..++..++..|...|++++|.+.
T Consensus 210 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 289 (406)
T 3sf4_A 210 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 289 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 888764210 112 236777888899999999999999887652111111 55778889999999999999999
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCchHHHHHHHHHhcCChHH
Q 037404 471 VQSM----PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS------DPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 471 ~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~ 532 (605)
++++ +..++ ..++..+...+...|++++|...++++++..+. ...++..++.++...|+...
T Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 290 HLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9876 11122 457788889999999999999999999987432 24567888889888887643
No 63
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=7.2e-11 Score=121.86 Aligned_cols=218 Identities=7% Similarity=-0.053 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHH-HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGM-KVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 371 (605)
+.+..+|++.+.. .+-+...|...+..+...|+.+.|. .+++...... +.+...+...+....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4456778888775 3446677777777778888888886 9999988643 45666777888888899999999999987
Q ss_pred CCC-------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhcc-
Q 037404 372 MTK-------------KD------------LVSWNAMLYGLAMHGQGEKALGLFSRMKDE-GFGPDKYTFVGVLCACTH- 424 (605)
Q Consensus 372 ~~~-------------~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~- 424 (605)
+.. |+ ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~ 482 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHI 482 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHh
Confidence 653 21 236788888888899999999999999885 2 1223334333332233
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHH
Q 037404 425 AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP----NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A 499 (605)
.++.+.|..+|+...+. ++.+...+..++......|+.+.|..+|+++ ...| ....|...+..-.+.|+.+.+
T Consensus 483 ~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 483 SKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred CCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35589999999999984 4456667788888888999999999999987 3333 245788888888899999999
Q ss_pred HHHHHHHHhhcCCCCc
Q 037404 500 EEVLDCLIRLKGSDPG 515 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~ 515 (605)
..+.+++.+..|+++.
T Consensus 561 ~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHhCCCCcH
Confidence 9999999999998764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.45 E-value=3.1e-12 Score=110.99 Aligned_cols=167 Identities=8% Similarity=-0.006 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA 421 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 421 (605)
+..+|..+...|...|++++|++.|++.. +.++.+|..+...|...|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 46678888888888888888888888765 4467788888899999999999999999888753 3356677777788
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A 499 (605)
+...++++.|...+.++.. ..+.+...+..++..|.+.|++++|++.|++. ... .+..++..++.++.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8899999999999999887 34556778889999999999999999999987 333 4577899999999999999999
Q ss_pred HHHHHHHHhhcCCCC
Q 037404 500 EEVLDCLIRLKGSDP 514 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~ 514 (605)
+..++++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988754
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=4.9e-11 Score=112.84 Aligned_cols=218 Identities=11% Similarity=0.025 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------ccCch-------HHHHHHHHHHHHcCCCCChhHHHHHHHHHHh
Q 037404 293 KEAARLYDQMEEAGLKPDDGTLISILAACA-------ESGLL-------GLGMKVHASINKYRFKCNTNVCNALVDMYAK 358 (605)
Q Consensus 293 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 358 (605)
++|..+|++.+... +.+...|..++..+. ..|++ ++|..++++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56677777776642 334445555554443 23554 6666666666653112344566666666666
Q ss_pred cCChHHHHHHHhcCCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-cccCCHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTK--K-DLV-SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC-THAGFIDKGVQ 433 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 433 (605)
.|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++..+.+ +++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777666665542 2 233 56666666666667777777776666542 22333333322221 12566666666
Q ss_pred HHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037404 434 YFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P---VEP--NAIIWGTLLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
+|+.+.+. .+.+...|..++..+.+.|++++|..+|+++ . .+| ....|..++....+.|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666652 2334556666666666666666666666665 1 233 24456666666666666666666666666
Q ss_pred hhcCCCC
Q 037404 508 RLKGSDP 514 (605)
Q Consensus 508 ~~~p~~~ 514 (605)
+..|+++
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 6666544
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1.2e-12 Score=129.83 Aligned_cols=199 Identities=10% Similarity=-0.046 Sum_probs=128.9
Q ss_pred HHHHHHHHHccCchHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHHhcCC-----------------hHHHHHHHhc
Q 037404 314 LISILAACAESGLLGLGMKVHASINKY----R-FKCNTNVCNALVDMYAKCGS-----------------LDNAMSVFNG 371 (605)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~ 371 (605)
+..+...+...|+++.|...+..+.+. + .+....++..+...|...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 334444444445555554444443322 0 01122345555555666666 6666555554
Q ss_pred CCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 372 MTK-----K----DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPD----KYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 372 ~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
... . ...++..+...|...|++++|+..+++..+... .++ ..++..+..++...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 321 1 224667777888888888888888888765311 011 23677788889999999999999988
Q ss_pred hHHhhCCCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037404 438 MERDYGILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV---EPN----AIIWGTLLGACRKHNAVELAEEVLDC 505 (605)
Q Consensus 438 ~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 505 (605)
+.....-.. ...++..++..|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 766321111 2467788899999999999999999876 11 111 34777888999999999999999999
Q ss_pred HHhhcCC
Q 037404 506 LIRLKGS 512 (605)
Q Consensus 506 ~~~~~p~ 512 (605)
++++.+.
T Consensus 369 al~~~~~ 375 (411)
T 4a1s_A 369 HLQLAXX 375 (411)
T ss_dssp HHHHCCH
T ss_pred HHHHHhh
Confidence 9987543
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=6.8e-12 Score=113.06 Aligned_cols=188 Identities=11% Similarity=0.002 Sum_probs=105.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---K-KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVL 419 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll 419 (605)
++..+......+...|++++|...|++.. + ++...+..+..++...|++++|+..+++..+. .| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 44555566666666666666666666544 2 44555555666666666666666666666653 33 334555566
Q ss_pred HHhcccCCHHHHHHHHHHhHHhhCCCCch-------HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 037404 420 CACTHAGFIDKGVQYFYSMERDYGILPQV-------EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN---AIIWGTLLG 488 (605)
Q Consensus 420 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~ 488 (605)
.++...|++++|...++++.+. .+.+. ..|..+...+...|++++|.+.|+++ ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6666666666666666666552 12222 34555555666666666666666655 34444 234445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++... +...++++..+.+.++..+. .......|.+++|+..+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 55332 33344555554444433332 22333445569999999999984
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=6.4e-12 Score=123.20 Aligned_cols=128 Identities=9% Similarity=0.046 Sum_probs=59.0
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHh---hCC-CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-----CCC-HHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERD---YGI-LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-----EPN-AII 482 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~ 482 (605)
++..+..+|...|++++|...++++..- .+. +....++..++..|.+.|++++|.+.+++. .+ .|. ...
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444455555555555555444331 012 222334445555555555555555555443 00 111 112
Q ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 483 WGTLLGACRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 483 ~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+..+...+...|+ +++|..++++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444555555 44444444443 11223334455566666666666666666666554
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=3.1e-12 Score=125.41 Aligned_cols=288 Identities=10% Similarity=0.001 Sum_probs=208.3
Q ss_pred HHcCCChHHHHHHHHhCCC--------CChhHHHHHHHH--HHhcCCHHHHH-----------HHHhhCCCCCc--cc--
Q 037404 224 YAKAGEMNLAFELFEKIPH--------RNIVSWSTMVWG--YSKDGDMEMAK-----------LLFDRMPAKTL--VP-- 278 (605)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~--------~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~--~~-- 278 (605)
+.+.+++++|..+++++.+ ++...|..++.. ..-.++++.+. +.++.+..... ..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 4578999999999876532 233344444332 11223333333 44444422111 11
Q ss_pred ----HHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC------
Q 037404 279 ----WTIIISGYAEKGMAKEAARLYDQMEEAGL-KPD----DGTLISILAACAESGLLGLGMKVHASINKYRFK------ 343 (605)
Q Consensus 279 ----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------ 343 (605)
+......+...|++++|+..|++..+.-. .++ ..++..+...+...|+++.|...+....+....
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 12255677889999999999999986410 122 356778888999999999999999988753211
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC
Q 037404 344 CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----KDL----VSWNAMLYGLAMHGQGEKALGLFSRMKDE----GFGP 410 (605)
Q Consensus 344 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p 410 (605)
....+++.+...|...|++++|...|++..+ ++. .++..+...|...|++++|+..+++..+. +..|
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 1235688889999999999999999987762 222 47888999999999999999999998762 3324
Q ss_pred -CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCCchHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHH
Q 037404 411 -DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILPQVEHYGCMIDLLGRSGR---LKEALRLVQSMPVEPN-AII 482 (605)
Q Consensus 411 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~ 482 (605)
...++..+..++...|++++|...+++..... +.+.....+..+...+...|+ +++|+.++++.+..|+ ...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~ 341 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF 341 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence 35678889999999999999999999887621 122223346778888999999 9999999999865444 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
+..++..|...|++++|...++++.+...
T Consensus 342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 342 AIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999998743
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=6.2e-12 Score=131.45 Aligned_cols=164 Identities=15% Similarity=0.152 Sum_probs=142.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCM 454 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 454 (605)
+..+|+.+...|.+.|++++|+..|++..+. .| +..++..+..+|.+.|++++|+..|+++.+. .+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 4567888888888899999999999988875 45 4678888889999999999999999998872 33457789999
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.+|...|++++|++.|+++ .+.| +...+..++.++...|++++|+..|+++++++|+++.++..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 99999999999999999987 4445 477899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 037404 533 VANVRLQMKKT 543 (605)
Q Consensus 533 A~~~~~~~~~~ 543 (605)
|.+.++++.+.
T Consensus 164 A~~~~~kal~l 174 (723)
T 4gyw_A 164 YDERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=9.5e-12 Score=107.85 Aligned_cols=161 Identities=12% Similarity=0.032 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (605)
..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 334444444455555555554444321 223444555555555555555555555555541 23345556666666666
Q ss_pred cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHH
Q 037404 461 SGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRL 538 (605)
Q Consensus 461 ~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 538 (605)
.|++++|.+.++++ ..+.+...+..++..+...|++++|...++++.+..|.++..+..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666665 1234566777777888888888888888888888888888888888888888888888888888
Q ss_pred HHHhCC
Q 037404 539 QMKKTR 544 (605)
Q Consensus 539 ~~~~~~ 544 (605)
++.+..
T Consensus 169 ~~~~~~ 174 (186)
T 3as5_A 169 KANELD 174 (186)
T ss_dssp HHHHHH
T ss_pred HHHHcC
Confidence 887653
No 72
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.40 E-value=2.6e-12 Score=123.26 Aligned_cols=234 Identities=9% Similarity=-0.023 Sum_probs=141.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CC----hhH
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEA----GLKP-DDGTLISILAACAESGLLGLGMKVHASINKYRFK-CN----TNV 348 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~ 348 (605)
+..+...+...|++++|...+++..+. +..| ....+..+...+...|+++.|...+....+.... ++ ..+
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 125 (338)
T 3ro2_A 46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA 125 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 334444444445555554444443321 1011 1223344444555555555555555544322100 01 224
Q ss_pred HHHHHHHHHhcCC--------------------hHHHHHHHhcCCC-----C----ChhHHHHHHHHHHHcCChHHHHHH
Q 037404 349 CNALVDMYAKCGS--------------------LDNAMSVFNGMTK-----K----DLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 349 ~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
+..+...|...|+ +++|...+++... . ....+..+...+...|++++|...
T Consensus 126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 205 (338)
T 3ro2_A 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205 (338)
T ss_dssp HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 5555566666666 6666666554321 1 124667777788888888888888
Q ss_pred HHHHHHCCC-CCC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHH
Q 037404 400 FSRMKDEGF-GPD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 400 ~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+++..+... .++ ..++..+...+...|++++|...+++......-.++ ..++..++..+...|++++|.+.
T Consensus 206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (338)
T 3ro2_A 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 285 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 887764210 111 236777788888999999999999887652211111 55677888899999999999999
Q ss_pred HHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 471 VQSM-PV---EPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 471 ~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
++++ .. .++ ..++..+...+...|++++|...++++.++.+.
T Consensus 286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 8876 11 111 346778889999999999999999999987654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.40 E-value=5.9e-13 Score=126.38 Aligned_cols=234 Identities=12% Similarity=0.071 Sum_probs=121.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc------CC-CC
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEA-------GLKPDDGTLISILAACAESGLLGLGMKVHASINKY------RF-KC 344 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~ 344 (605)
+..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|...++.+.+. +. +.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 667777788888888888888877652 11222344555556666666666666666655432 11 11
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDE------GFGP-DKYTFVG 417 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ 417 (605)
... ++..+...|...|++++|...++++.+. +-.| ....+..
T Consensus 110 ~~~-------------------------------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 110 VAA-------------------------------TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHH-------------------------------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHH-------------------------------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 123 3444444444555555555555444432 1112 1234455
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhh-----CCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCC--
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDY-----GILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-P---------VEPN-- 479 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-- 479 (605)
+...+...|++++|..+++++.... +..| ....+..++..|...|++++|.+.++++ . ..+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 5555666666666666666555410 1111 2344555666666666666666666554 1 0111
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 480 -----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 480 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...+..+...+...+.+.++...++++....|..+.++..++.+|.+.|++++|.+++++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222233344556666666777777767777778888888888888888888888887663
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=2.9e-10 Score=110.88 Aligned_cols=261 Identities=14% Similarity=-0.021 Sum_probs=168.1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCchHHHHHHHHHHHHcCCC-CC----hhHHHHHH
Q 037404 283 ISGYAEKGMAKEAARLYDQMEEAGLKPDDG----TLISILAACAESGLLGLGMKVHASINKYRFK-CN----TNVCNALV 353 (605)
Q Consensus 283 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~ 353 (605)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+.+....... .+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455667777777766666543111221 2344445566667777777766665432111 11 12345566
Q ss_pred HHHHhcCChHHHHHHHhcCCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C--CHHHHHHH
Q 037404 354 DMYAKCGSLDNAMSVFNGMTK----------K-DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG--P--DKYTFVGV 418 (605)
Q Consensus 354 ~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~~~l 418 (605)
..+...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 777778888888777765541 1 1234556777788888888888888887753211 1 23456777
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHH-----HHHHHhhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYG-----CMIDLLGRSGRLKEALRLVQSM-PVEPN-----AIIWGTLL 487 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~ 487 (605)
...+...|++++|...+++.............+. ..+..+...|++++|...+++. ...|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888889999999999988865322211111111 2334577889999999999887 22221 23456777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCC------CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGSD------PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+...|++++|...++++....+.. ..++..++.++...|+.++|...+++....
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88888999999999999988764321 136677888899999999999999988764
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=4.5e-11 Score=113.03 Aligned_cols=213 Identities=9% Similarity=0.005 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHcCCCCChhHHHHHHHHHH-------hcCCh-------HHHHHHHhcCCC----CChhHHHHHHHHHHH
Q 037404 328 GLGMKVHASINKYRFKCNTNVCNALVDMYA-------KCGSL-------DNAMSVFNGMTK----KDLVSWNAMLYGLAM 389 (605)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 389 (605)
+.|...|+++.... +.++..|..++..+. +.|++ ++|..+|++... .+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57778888887754 446778888887776 35886 899999997653 355789999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh-hcCCHHH
Q 037404 390 HGQGEKALGLFSRMKDEGFGPD-KY-TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG-RSGRLKE 466 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 466 (605)
.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|+++.+ ..+++...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 788888999999999999999999987 23445556655444432 3799999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCC-CCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 467 ALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL---KGS-DPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 467 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
|.++|+++ .. +.+...|..++..+.+.|++++|+.+|+++++. .|+ ...+|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 22 345778999999999999999999999999996 343 5668889999999999999999999999
Q ss_pred HhCCC
Q 037404 541 KKTRA 545 (605)
Q Consensus 541 ~~~~~ 545 (605)
.+..+
T Consensus 268 ~~~~p 272 (308)
T 2ond_A 268 FTAFR 272 (308)
T ss_dssp HHHTT
T ss_pred HHHcc
Confidence 98654
No 76
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.37 E-value=1.2e-09 Score=112.73 Aligned_cols=427 Identities=11% Similarity=0.030 Sum_probs=271.5
Q ss_pred chHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCC---hHHHH
Q 037404 96 NAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVG---VSLAK 172 (605)
Q Consensus 96 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~~~a~ 172 (605)
..+.+..|++.+..+ +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.+ + .+.+.
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~--~~~~~~~v~ 123 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKM--EELDAAVIE 123 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC----CCCHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhC--CcchHHHHH
Confidence 444555566666553 348888999999888888999999999999886 3556677888888888888 7 89999
Q ss_pred HHHhccCC-----CCeehHHHHHHHHHhCCCh--------hHHHHHHhhc-----C-CCC-cchHHHHHHHHHc------
Q 037404 173 KLFMSMGE-----RDIVSWNSMIAGLVKGGEL--------SEARRLFDEM-----P-ERD-AVSWNTILDGYAK------ 226 (605)
Q Consensus 173 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~-----~-~~~-~~~~~~ll~~~~~------ 226 (605)
.+|++... +++..|...+....+.++. +...++|+.. . .++ ...|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99987653 5666777777666555543 2233555543 1 232 2344444443322
Q ss_pred ---CCChHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 037404 227 ---AGEMNLAFELFEKIPHRNI----VSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY 299 (605)
Q Consensus 227 ---~~~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 299 (605)
.++.+.+..+|+.+..-.. .+|......--..+. ..+.+++.+ ...+++.|...+
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~ 265 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLY 265 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHH
Confidence 2234556666666553111 122111111000000 001111100 011233444444
Q ss_pred HHHHHc--CCC---------------C-----CH---HHHHHHHHHHHccC-------chHHHHHHHHHHHHcCCCCChh
Q 037404 300 DQMEEA--GLK---------------P-----DD---GTLISILAACAESG-------LLGLGMKVHASINKYRFKCNTN 347 (605)
Q Consensus 300 ~~m~~~--~~~---------------p-----~~---~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~ 347 (605)
.++... ++. | +. ..|...+.---..+ ..+.+..+|+++.... +....
T Consensus 266 ~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~ 344 (679)
T 4e6h_A 266 QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPE 344 (679)
T ss_dssp HHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHH
T ss_pred HHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHH
Confidence 443211 110 1 00 12333332222221 1234556788777653 44778
Q ss_pred HHHHHHHHHHhcCChHHHH-HHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---------CCC---
Q 037404 348 VCNALVDMYAKCGSLDNAM-SVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---------GPD--- 411 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---------~p~--- 411 (605)
+|...+..+...|+.++|. .+|++.. +.+...|...+....+.|++++|..+|+++.+... .|+
T Consensus 345 lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~ 424 (679)
T 4e6h_A 345 IWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNES 424 (679)
T ss_dssp HHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchh
Confidence 8888888888999999996 9998765 44666788888889999999999999999886410 132
Q ss_pred ---------HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc-CCHHHHHHHHHhC--CCCCC
Q 037404 412 ---------KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS-GRLKEALRLVQSM--PVEPN 479 (605)
Q Consensus 412 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~ 479 (605)
...|...+....+.|..+.|..+|..+.+.. .......|...+..-.+. ++.+.|.++|+.. ..+.+
T Consensus 425 ~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~ 503 (679)
T 4e6h_A 425 AINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc
Confidence 2357777777788899999999999998730 122334454444444444 4599999999987 33345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS---DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
...|...+......|+.+.|+.+|++++...|+ ...+|..++..-.+.|+.+.+.++.+++.+.-+.
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 667778888888899999999999999998773 4467888888888999999999999999986543
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=4.8e-11 Score=107.43 Aligned_cols=206 Identities=9% Similarity=0.015 Sum_probs=161.9
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHH
Q 037404 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLY 385 (605)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~ 385 (605)
.|...+......+...|++++|...|..+.+...+++...+..+..++...|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 45678888889999999999999999999988764677788789999999999999999999876 335678899999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc---hHHHHHHH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEGFGPDK-------YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ---VEHYGCMI 455 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~ 455 (605)
.|...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..++++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999999853 2234 4577778889999999999999999976 3454 66788888
Q ss_pred HHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 456 DLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
..|...|+. .++++ . ...+...+.... ....+.+++|+..++++++++|+++.+...+..+..
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 888766643 23332 1 122344443333 334577999999999999999999988887776643
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.34 E-value=9.2e-11 Score=101.50 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=144.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
...+..+...+...|++++|...++++.. .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778888999999999999998873 366788889999999999999999999998863 44677888889999
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...|++++|...++++.. ..+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999987 34557788899999999999999999999987 2 2345778899999999999999999
Q ss_pred HHHHHHHhhcCCCCch
Q 037404 501 EVLDCLIRLKGSDPGN 516 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~ 516 (605)
..++++.+..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998887643
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=4.5e-12 Score=120.24 Aligned_cols=237 Identities=14% Similarity=0.087 Sum_probs=146.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCc---ccHHHHHHHHHhCCChHHHHHHHHHHHHc------CC
Q 037404 245 IVSWSTMVWGYSKDGDMEMAKLLFDRMPA--------KTL---VPWTIIISGYAEKGMAKEAARLYDQMEEA------GL 307 (605)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 307 (605)
..++..+...|...|++++|..+|+++.+ .+. ..+..+...+...|++++|...+++..+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46788999999999999999999998764 222 22788899999999999999999999864 22
Q ss_pred CC-CHHHHHHHHHHHHccCchHHHHHHHHHHHHcC------C-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhH
Q 037404 308 KP-DDGTLISILAACAESGLLGLGMKVHASINKYR------F-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVS 379 (605)
Q Consensus 308 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 379 (605)
.| ....+..+...+...|++++|...++.+.+.. . +.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------------------- 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN---------------------------- 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH----------------------------
Confidence 23 34567788888999999999999988876531 1 111223334
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh------CCCC
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDE------GFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDY------GILP 446 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~ 446 (605)
+...|...|++++|+..++++.+. +-.|. ..++..+..++...|++++|...++++.... ...+
T Consensus 159 ---la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 159 ---LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp ---HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 444445555555555555554432 11221 2345556666666677777766666665410 0111
Q ss_pred c-------hHHHHHHHHHhhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 447 Q-------VEHYGCMIDLLGRSGRLKEALRLVQSMP-VEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 447 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
. ...+..+...+...+.+.+|...++... ..| +..++..++.+|...|++++|...+++++++.|.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 1122223333444555556666666652 233 3557888999999999999999999999998765
No 80
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=4.2e-11 Score=120.39 Aligned_cols=179 Identities=8% Similarity=-0.012 Sum_probs=156.4
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHH
Q 037404 362 LDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQG-EKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYS 437 (605)
Q Consensus 362 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 437 (605)
++++...++... +.+...+..+...|...|++ ++|+..|++..+.. +-+...+..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566665443 34678899999999999999 99999999999863 33578899999999999999999999999
Q ss_pred hHHhhCCCCchHHHHHHHHHhhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHHH
Q 037404 438 MERDYGILPQVEHYGCMIDLLGRS---------GRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH--------NAVEL 498 (605)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~~ 498 (605)
+.+ ..|+...+..+...|... |++++|.+.++++ ...| +...|..++.++... |++++
T Consensus 163 al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 976 457788999999999999 9999999999988 3334 577899999999998 99999
Q ss_pred HHHHHHHHHhhcC---CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 499 AEEVLDCLIRLKG---SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 499 A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
|+..++++++.+| .++.++..++.+|...|++++|++.++++.+..
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999999999999999999999864
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=6.6e-11 Score=115.66 Aligned_cols=222 Identities=8% Similarity=-0.035 Sum_probs=137.3
Q ss_pred HHHccCchHHHHHHHHHHHHcCC--C---CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----C-----ChhHHHHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRF--K---CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----K-----DLVSWNAML 384 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~l~ 384 (605)
.+...|+++.|...++.+.+... . ....++..+...|...|+++.|...+++... + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34455666666666665543211 0 1134455666666777777666666654431 1 124566677
Q ss_pred HHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHh---hCCCCchHHHHHHHH
Q 037404 385 YGLAMHGQGEKALGLFSRMKDE----GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERD---YGILPQVEHYGCMID 456 (605)
Q Consensus 385 ~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~~l~~ 456 (605)
..|...|++++|+..+++..+. +-.+ ...++..+..+|...|++++|...+++...- .+.+....++..++.
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 7777788888888777776542 1111 1235666777788888888888888777651 122333566777888
Q ss_pred HhhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 457 LLGRSGRLKEALRLVQSM----PV--EPN-AIIWGTLLGACRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.+.+.|++++|.+.+++. .. .|. ...+..+...+...|+ +.+|...+++. ...|.....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888765 11 122 2344555555666677 66666666652 1123344567778888888
Q ss_pred cCChHHHHHHHHHHHh
Q 037404 527 TGDWNKVANVRLQMKK 542 (605)
Q Consensus 527 ~g~~~~A~~~~~~~~~ 542 (605)
.|++++|...++++.+
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 8888888888888765
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=3.9e-10 Score=110.15 Aligned_cols=227 Identities=10% Similarity=0.016 Sum_probs=161.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCchHHHHHHHHHHHHcCC-----C-CChhHHH
Q 037404 282 IISGYAEKGMAKEAARLYDQMEEAGL-KPD----DGTLISILAACAESGLLGLGMKVHASINKYRF-----K-CNTNVCN 350 (605)
Q Consensus 282 l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 350 (605)
....+...|++++|+..|++..+... .++ ..++..+...+...|+++.|...+....+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445567777777777777664310 122 23455666677777777777777776654211 1 1234567
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKD-----EGFGPDKYTFV 416 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~ 416 (605)
.+..+|...|++++|.+.|++..+ ++ ..++..+...|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 778888888888888888876542 12 24677788889999999999999998876 32 22356788
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCC---CCchHHHHHHHHHhhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGI---LPQVEHYGCMIDLLGRSGR---LKEALRLVQSMPVEPN-AIIWGTLLGA 489 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~ 489 (605)
.+..++.+.|++++|...+++......- +.....+..+...+...|+ +.+|+..+++.+..|+ ...+..++..
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998873222 2224456677777888888 9999999998754444 3466778899
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 037404 490 CRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~ 509 (605)
|...|++++|...++++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998875
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.23 E-value=7e-10 Score=108.16 Aligned_cols=284 Identities=11% Similarity=0.022 Sum_probs=173.0
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC---CC-cc----cHHHHHHHHHhCCChHHHHHHHHHHHHcCC-CCCH----HHHHHHH
Q 037404 252 VWGYSKDGDMEMAKLLFDRMPA---KT-LV----PWTIIISGYAEKGMAKEAARLYDQMEEAGL-KPDD----GTLISIL 318 (605)
Q Consensus 252 ~~~~~~~~~~~~a~~~~~~~~~---~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~ll 318 (605)
...+...|++++|...+++... .+ .. .++.+...+...|++++|...+++...... .++. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3344455666666555544321 11 11 134455566666777777777766654210 1111 2234555
Q ss_pred HHHHccCchHHHHHHHHHHHHc----CCC--C-ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C------ChhHHHHH
Q 037404 319 AACAESGLLGLGMKVHASINKY----RFK--C-NTNVCNALVDMYAKCGSLDNAMSVFNGMTK--K------DLVSWNAM 383 (605)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~l 383 (605)
..+...|+++.|...++...+. +.. | ....+..+...+...|++++|...+++... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6667777777777777766532 211 1 234455677778888888888888875431 1 12456777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhcccCCHHHHHHHHHHhHHhhCCCC---chHHHHHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPD--KYTFV----GVLCACTHAGFIDKGVQYFYSMERDYGILP---QVEHYGCM 454 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~l 454 (605)
...+...|++++|...+++.....-.++ ..... ..+..+...|++++|...++..... ...+ ....+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHH
Confidence 7888889999999999988765321211 11111 2334477899999999999888652 2111 12356678
Q ss_pred HHHhhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 455 IDLLGRSGRLKEALRLVQSM-------PVEPNA-IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
...+...|++++|...+++. +..++. ..+..+..++...|+.++|...++++.+..+... ....+..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-----~~~~~~~ 334 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG-----FISHFVI 334 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-----CCHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-----HHHHHHH
Confidence 88899999999999998876 111222 2566677888899999999999999998754311 1123334
Q ss_pred cCChHHHHHHHHHHHhC
Q 037404 527 TGDWNKVANVRLQMKKT 543 (605)
Q Consensus 527 ~g~~~~A~~~~~~~~~~ 543 (605)
.| +....+++.+...
T Consensus 335 ~g--~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 335 EG--EAMAQQLRQLIQL 349 (373)
T ss_dssp TH--HHHHHHHHHHHHT
T ss_pred cc--HHHHHHHHHHHhC
Confidence 44 5566666666554
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.4e-09 Score=100.02 Aligned_cols=206 Identities=8% Similarity=-0.012 Sum_probs=125.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-HHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMTK--K-D---LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF-GPD-KYTFV 416 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~~~ 416 (605)
+...+..+...+.+.|++++|...|+++.. | + ...+..+..+|...|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566666666666666666665542 1 2 34555566666666666666666666665421 111 23444
Q ss_pred HHHHHhcc--------cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037404 417 GVLCACTH--------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLG 488 (605)
Q Consensus 417 ~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~ 488 (605)
.+..++.. .|++++|...|+++... .+.+......+.......+.. ...+..++.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 55555555 66666666666666552 111222222211111000000 112356788
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCCceeEEE
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAAT----------GDWNKVANVRLQMKKTRAQKPSGASSVE 555 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 555 (605)
.+...|++++|+..++++++..|+++ ..+..++.+|... |++++|+..++++.+..+
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 89999999999999999999999854 5788999999877 899999999999998532
Q ss_pred eCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhc
Q 037404 556 VDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPV 590 (605)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 590 (605)
.+|........+..+...+.+.
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHHh
Confidence 2445556666666665555443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=1.7e-10 Score=108.12 Aligned_cols=188 Identities=9% Similarity=-0.077 Sum_probs=124.0
Q ss_pred HHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KYTFVGVLC 420 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~ 420 (605)
.|...|++++|...|.+... .+ ..+|+.+...|...|++++|+..+++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666666665554431 01 34666777777777788888777777654210 111 246777888
Q ss_pred Hhccc-CCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHH
Q 037404 421 ACTHA-GFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN---A-----IIWGTL 486 (605)
Q Consensus 421 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l 486 (605)
+|... |++++|+..|+++.+-..-..+ ..++..++..+.+.|++++|+..|++. ...|+ . ..+..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999999988762111111 356788899999999999999999887 22222 1 256777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCch-----HHHHHHHHH--hcCChHHHHHHHHHHHh
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGN-----YTMLSNIFA--ATGDWNKVANVRLQMKK 542 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~ 542 (605)
+.++...|++++|+..++++++++|..+.. +..++..+. ..+++++|+..++++..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 888889999999999999999988876543 344556664 45678888888765544
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.20 E-value=2.9e-10 Score=105.88 Aligned_cols=222 Identities=12% Similarity=0.081 Sum_probs=147.0
Q ss_pred HccCchHHHHHHHHHHHHc-------CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C----ChhHHHHH
Q 037404 322 AESGLLGLGMKVHASINKY-------RFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------K----DLVSWNAM 383 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~l 383 (605)
...|+++.|...+++..+. ..+....++..+...|...|++++|...++++.. + ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888887776542 2223456778888889999999999888876541 1 23577788
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh-----C-CCCchHH
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDE------GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY-----G-ILPQVEH 450 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~-~~~~~~~ 450 (605)
...|...|++++|...+++..+. .-.| ...++..+...+...|++++|...++++.... + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888899999999988887763 1123 24567778888888899999998888887620 1 2223567
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-C---------CCCCH-HHHHHHHHHHHhcC------CHHHHHHHHHHHHhhcCCC
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-P---------VEPNA-IIWGTLLGACRKHN------AVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~-~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p~~ 513 (605)
+..++..|...|++++|.++++++ . ..+.. ..+..+.......+ .+..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 778888888889988888888766 1 12222 23333333333222 2333333333322233455
Q ss_pred CchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 514 PGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 514 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+.++..++.+|...|++++|..+++++.+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667899999999999999999999998864
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=4.9e-09 Score=95.89 Aligned_cols=174 Identities=9% Similarity=0.019 Sum_probs=110.5
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 365 AMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 365 A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
|+..|++.. .++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 555565544 234445556667777777777777777776654421 2445666677777777888888887777755
Q ss_pred hhCCCC-----chHHHHHHHHH--hhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 037404 441 DYGILP-----QVEHYGCMIDL--LGRSG--RLKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRL- 509 (605)
Q Consensus 441 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 509 (605)
..| +..+...++.+ ....| ++.+|..+|+++ ...|+..+...++.++.+.|++++|++.++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 244 23444444444 33333 777888888777 33455233333344677778888888888776665
Q ss_pred ---------cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 ---------KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|+++.++..++.+....|+ +|.++++++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 37777777777766666776 777777777774
No 88
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=3.8e-10 Score=117.99 Aligned_cols=163 Identities=11% Similarity=0.118 Sum_probs=136.3
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037404 345 NTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGP-DKYTFVGVLC 420 (605)
Q Consensus 345 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~ 420 (605)
+...++.|..+|.+.|++++|++.|++.. +.+..+|..+..+|.+.|++++|+..|++..+. .| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 45678888888888888888888888765 446778888999999999999999999998885 45 4678888999
Q ss_pred HhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 037404 421 ACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN-AIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 421 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 498 (605)
++...|++++|++.|+++.+. .+-+...+..++..|...|++++|++.|+++ .+.|+ ...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999998872 3445778999999999999999999999987 44554 6788899999999999999
Q ss_pred HHHHHHHHHhhcC
Q 037404 499 AEEVLDCLIRLKG 511 (605)
Q Consensus 499 A~~~~~~~~~~~p 511 (605)
|.+.+++++++.|
T Consensus 164 A~~~~~kal~l~~ 176 (723)
T 4gyw_A 164 YDERMKKLVSIVA 176 (723)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh
Confidence 9999999988643
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=9.8e-10 Score=89.20 Aligned_cols=128 Identities=16% Similarity=0.163 Sum_probs=86.3
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 037404 415 FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRK 492 (605)
Q Consensus 415 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~ 492 (605)
+..+...+...|++++|..+++.+.+. .+.+...+..++..+...|++++|.+.++++ . .+.+...+..++..+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555566666655555541 2234455555666666666666666666655 1 22345567777777888
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 493 HNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.|++++|...++++.+..|.++..+..++.++...|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888887643
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=2.3e-09 Score=95.99 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHH
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTK--KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK----YTF 415 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~ 415 (605)
...+..+...+...|++++|...|+++.. |+ ...+..+..+|...|++++|+..|+++.+.. |+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence 34455556667777777777777776652 21 1356666677777777777777777776642 321 133
Q ss_pred HHHHHHhcc------------------cCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCC
Q 037404 416 VGVLCACTH------------------AGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVE 477 (605)
Q Consensus 416 ~~ll~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 477 (605)
..+..++.. .|++++|...|+++.+ ..+-+...+..........+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~~~~~~~------------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLVFLKDRL------------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHHHHHHHH-------------
Confidence 333333332 3445555555555544 1111222211111000000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP---GNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
......++..+.+.|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++++...++.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00113456778899999999999999999999886 57999999999999999999999999887553
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=7.6e-10 Score=101.84 Aligned_cols=204 Identities=11% Similarity=0.019 Sum_probs=147.7
Q ss_pred CCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-C---hhHH
Q 037404 309 PDDGTLISILAACAESGLLGLGMKVHASINKYRFKCN--TNVCNALVDMYAKCGSLDNAMSVFNGMTK--K-D---LVSW 380 (605)
Q Consensus 309 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~ 380 (605)
.+...+......+.+.|++++|...|+.+.+...... ...+..+..+|.+.|++++|...|++... | + ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4566777888889999999999999999988653211 56788899999999999999999998763 2 2 3467
Q ss_pred HHHHHHHHH--------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 381 NAMLYGLAM--------HGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 381 ~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
..+..++.. .|++++|+..|+++.+. .|+. ..... ...+..+... -...+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 778888888 99999999999999985 3432 22211 1111111110 11235
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhcCCCCch
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKH----------NAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
..++..|.+.|++++|...|+++ ...|+ ...+..++.++... |++++|...++++++..|+++..
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 66788889999999999999887 22233 45677777888766 89999999999999999998743
Q ss_pred ---HHHHHHHHHhcCChHHH
Q 037404 517 ---YTMLSNIFAATGDWNKV 533 (605)
Q Consensus 517 ---~~~l~~~~~~~g~~~~A 533 (605)
...+..++.+.|+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 44555555555555443
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=9.3e-10 Score=102.99 Aligned_cols=218 Identities=11% Similarity=-0.005 Sum_probs=126.3
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCchHHHHHHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA----GLKPD-DGTLISILAACAESGLLGLGMKVH 334 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 334 (605)
++++|...|++ ....|...|++++|...|.+..+. |.+++ ..++..+..+|...|++++|...+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36666666555 255666667777777666665442 11111 234444455555555555555554
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCC-CC-
Q 037404 335 ASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMH-GQGEKALGLFSRMKDEGFG-PD- 411 (605)
Q Consensus 335 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~-p~- 411 (605)
+...+. +...|+...+ ..+++.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 444321 1111222111 23566677777775 8888888888877653100 01
Q ss_pred ---HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCch-----HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHH-
Q 037404 412 ---KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV-----EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAI- 481 (605)
Q Consensus 412 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~- 481 (605)
..++..+...+...|++++|+..|+++.....-.+.. ..+..++.++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2457777888888888888888888887621111111 15677778888888999998888887 4444422
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHHhhcCCCC
Q 037404 482 -----IWGTLLGACR--KHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 482 -----~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.+..++.++. ..+++++|+..|+++.+++|...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 2344555554 34678888888877777666543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=6.6e-09 Score=95.02 Aligned_cols=180 Identities=10% Similarity=0.058 Sum_probs=129.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----KDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
+...+++....+ .++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555444 34455556778888888899999888887643 244677778889999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--hcccC--CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-
Q 037404 405 DEGFGP-----DKYTFVGVLCA--CTHAG--FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM- 474 (605)
Q Consensus 405 ~~g~~p-----~~~~~~~ll~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 474 (605)
+. .| +..+...+..+ ....| ++.+|..+|+++..+ .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 56 35666666655 33334 899999999998652 344333334444888999999999998765
Q ss_pred CC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchH
Q 037404 475 PV-----------EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 475 ~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
.. +.|+.++..++......|+ +|.+++.++.+..|++|.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 21 3356677566666666787 89999999999999998543
No 94
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.10 E-value=2e-09 Score=100.26 Aligned_cols=177 Identities=10% Similarity=-0.049 Sum_probs=142.3
Q ss_pred hHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 362 LDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 362 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
.+.....+....+.+...+..+...+...|++++|...|++..+.. +-+...+..+..++...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3444555555555566777788888999999999999999998853 335678888899999999999999999998662
Q ss_pred hCCCCchHHH-HHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--Cch
Q 037404 442 YGILPQVEHY-GCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGN 516 (605)
Q Consensus 442 ~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~ 516 (605)
.|+.... ......+...++.++|.+.+++. .. +.+...+..+...+...|++++|+..+.++++.+|.+ +.+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 3444333 23334466778888888888877 33 3457789999999999999999999999999999988 889
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 517 YTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 517 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+..++.+|...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999999988764
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.10 E-value=9.4e-11 Score=97.37 Aligned_cols=140 Identities=9% Similarity=0.002 Sum_probs=94.7
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH
Q 037404 386 GLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 386 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (605)
.+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|++.|+++.+ -.+-+...|..++.+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence 344456666666666665432 232 23445566677777777777777777766 2334566777777777777888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 465 KEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEE-VLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
++|...|+++ .+.| +...+..++..+.+.|++++|.+ +++++++++|.++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8887777776 3344 46677778888888888776554 4578888888888888888888877775
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=1.2e-08 Score=90.25 Aligned_cols=171 Identities=11% Similarity=-0.102 Sum_probs=137.0
Q ss_pred HHHHHhcCC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC----CHHHHHHHHHHhH
Q 037404 365 AMSVFNGMT-KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG----FIDKGVQYFYSME 439 (605)
Q Consensus 365 A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 439 (605)
|.+.|++.. ..++..+..+...|...+++++|+.+|++..+.| +...+..+...|.. + ++++|..+|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444333 3466777777888888889999999999888865 56677777777777 6 8999999999987
Q ss_pred HhhCCCCchHHHHHHHHHhhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 037404 440 RDYGILPQVEHYGCMIDLLGR----SGRLKEALRLVQSM-PVEPN---AIIWGTLLGACRK----HNAVELAEEVLDCLI 507 (605)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 507 (605)
+ . -+...+..|...|.. .+++++|.++|++. ...|+ +..+..|...|.. .+++++|...++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 6 2 356677888888877 88999999999988 44443 7788889999988 789999999999999
Q ss_pred hhcCCCCchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 037404 508 RLKGSDPGNYTMLSNIFAAT-G-----DWNKVANVRLQMKKTR 544 (605)
Q Consensus 508 ~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 544 (605)
+. |.++..+..|+.+|... | ++++|..++++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 87 77788999999999765 4 8999999999999865
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=4.6e-10 Score=118.05 Aligned_cols=169 Identities=10% Similarity=-0.070 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHhcCC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 357 AKCGSLDNAMSVFNGMT-----------KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 357 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
...|++++|++.+++.. +.+...+..+...|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44566666666665543 2344555556666666666666666666665532 22445555555666666
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVL 503 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 503 (605)
|++++|...|+++.+. .+.+...+..+..+|.+.|++++ .+.|+++ ...| +...+..+..++.+.|++++|+..+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666666666551 22344555666666666666666 6666555 2222 3445666666666666666666666
Q ss_pred HHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 504 DCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 504 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
+++++.+|.++.++..++.++...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 66666666666666666666655444
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=5.8e-09 Score=84.51 Aligned_cols=132 Identities=15% Similarity=0.156 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHh
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLL 458 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (605)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677788888899999999999888753 345677778888888899999999999998772 344667788889999
Q ss_pred hhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 459 GRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 459 ~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999887 2 23457788888999999999999999999999888753
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=2.8e-09 Score=99.10 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHc------CC-CCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-------C--
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKY------RF-KCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-------K-- 375 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~-- 375 (605)
.++..+...+...|++++|...+..+.+. +- +....++..+...|...|++++|...|++... +
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44555566666666666666666665533 11 12344566677777777777777777765541 1
Q ss_pred --ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh----
Q 037404 376 --DLVSWNAMLYGLAMHGQGEKALGLFSRMKDE------GFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDY---- 442 (605)
Q Consensus 376 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---- 442 (605)
...++..+...|...|++++|...+++..+. +-.| ...++..+..++...|++++|...++++.+..
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 2356777778888888888888888887764 1123 23567788888999999999999998887621
Q ss_pred --CCCC-chHHHHHHHHHhhhc------CCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 443 --GILP-QVEHYGCMIDLLGRS------GRLKEALRLVQSMP-VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 443 --~~~~-~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
...+ ....+..+...+... ..+.++...++... ..|+ ..++..++..+...|++++|..+++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1122 223333333333332 23555555555553 2233 457888899999999999999999998875
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.05 E-value=5.5e-10 Score=92.69 Aligned_cols=123 Identities=7% Similarity=-0.060 Sum_probs=103.1
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHN 494 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 494 (605)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..++.++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44567778899999999988754 233 3556678899999999999999999998 4444 5779999999999999
Q ss_pred CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHH-HHHHHhC
Q 037404 495 AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANV-RLQMKKT 543 (605)
Q Consensus 495 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 543 (605)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887665 6888874
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.02 E-value=3.8e-09 Score=109.24 Aligned_cols=160 Identities=10% Similarity=0.013 Sum_probs=125.3
Q ss_pred cCChHHHHHHHhcCCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHH
Q 037404 359 CGSLDNAMSVFNGMTK---KDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYF 435 (605)
Q Consensus 359 ~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 435 (605)
.|++++|.+.|++..+ .+...|..+...|...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998763 456789999999999999999999999998853 335678888999999999999999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhhc
Q 037404 436 YSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH---NAVELAEEVLDCLIRLK 510 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 510 (605)
+++.+. .+.+...+..++..|.+.|++++|.+.++++ ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999883 3456788999999999999999999999987 3334 577888899999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 037404 511 GSDPGNYTMLS 521 (605)
Q Consensus 511 p~~~~~~~~l~ 521 (605)
|.+...+..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99988888776
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.01 E-value=6.7e-09 Score=91.59 Aligned_cols=130 Identities=7% Similarity=-0.100 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh
Q 037404 381 NAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR 460 (605)
Q Consensus 381 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (605)
..+..+|...|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+ -.+.+...+..++..|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH
Confidence 347888999999999999999998853 33567888889999999999999999999987 334467788888888876
Q ss_pred cCC--HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 461 SGR--LKEALRLVQSMP-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 461 ~g~--~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
.|. .+.+...++... ..|....+.....++...|++++|+..|+++++++|++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 654 445666676663 22223344556667778899999999999999999873
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.00 E-value=3.1e-09 Score=90.99 Aligned_cols=156 Identities=13% Similarity=0.086 Sum_probs=94.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhhc
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL-LGRS 461 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 461 (605)
....+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+... .|+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 3344444555555555554444321 113344444455555555555555555554431 1122222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--CchHHHHHHHHHhcCChHHHHHHH
Q 037404 462 GRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD--PGNYTMLSNIFAATGDWNKVANVR 537 (605)
Q Consensus 462 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~ 537 (605)
+...+|.+.+++. ...| +...+..+..++...|++++|+..++++++.+|.. +..+..++.++...|+.++|...+
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222356666655 3334 57788889999999999999999999999999875 558999999999999999999999
Q ss_pred HHHHh
Q 037404 538 LQMKK 542 (605)
Q Consensus 538 ~~~~~ 542 (605)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 104
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.00 E-value=2.3e-09 Score=88.39 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=90.3
Q ss_pred CCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHH
Q 037404 444 ILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTML 520 (605)
Q Consensus 444 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 520 (605)
+.| +...+..++..+.+.|++++|.+.|+++ ...| +...|..++.++...|++++|+..|+++++++|+++.++..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 344 4567788889999999999999999988 3344 577999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 037404 521 SNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 521 ~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+.+|...|++++|+..++++.+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999854
No 105
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.99 E-value=2.1e-09 Score=88.82 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=87.7
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..++..+.+.|++++|...|+++ .. +.+...|..+..++...|++++|+..++++++.+|+++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4567778888999999999999999987 33 346778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037404 525 AATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|+..+++..+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999998853
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=8.7e-09 Score=97.16 Aligned_cols=218 Identities=12% Similarity=0.001 Sum_probs=143.3
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 037404 289 KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAE-SGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 367 (605)
.|++++|.+++++..+.. +. .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 466777777777766532 11 1222 45666666665543 456778888888888
Q ss_pred HHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcccCCHHHHHH
Q 037404 368 VFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KYTFVGVLCACTHAGFIDKGVQ 433 (605)
Q Consensus 368 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~g~~~~a~~ 433 (605)
.|.+... .+ ..+|+.+...|...|++++|+..|++..+.-. .+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8876542 11 34777788888888999999988888665311 222 2456777777877 88999988
Q ss_pred HHHHhHHhhCCC---C-chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 037404 434 YFYSMERDYGIL---P-QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV---EPN----AIIWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 434 ~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 501 (605)
.|+++..-..-. + ...++..+...|.+.|++++|++.|++. .+ .++ ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888877621111 1 1456777888888888888888888876 11 111 2255566667777788888888
Q ss_pred HHHHHHhhcCCCCch-----HHHHHHHHHhcCChHHHHH
Q 037404 502 VLDCLIRLKGSDPGN-----YTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 535 (605)
.+++++ ..|..... +..++..+ ..|+.+.+.+
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 888888 88877664 23344444 5667665555
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.94 E-value=1.5e-08 Score=80.87 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=70.3
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
..+...+..|.+.|++++|++.|++. ... .+...|..++.++.+.|++++|+..++++++++|.++.+|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45566677777777777777777776 222 3466777777777777888888888888887777777777788888888
Q ss_pred cCChHHHHHHHHHHHhC
Q 037404 527 TGDWNKVANVRLQMKKT 543 (605)
Q Consensus 527 ~g~~~~A~~~~~~~~~~ 543 (605)
.|++++|++.+++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 88888888888777763
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=1.5e-08 Score=95.47 Aligned_cols=220 Identities=10% Similarity=-0.025 Sum_probs=134.8
Q ss_pred cCCHHHHHHHHhhCCCCCcccHHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHH
Q 037404 258 DGDMEMAKLLFDRMPAKTLVPWTIIISGYAE-KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHAS 336 (605)
Q Consensus 258 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 336 (605)
.|++++|.+++++..+.... .+.. .++++.|...|.+. ...|...|++++|...+..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 46677777777664321111 1222 56777777777654 3456677888888887777
Q ss_pred HHHcCCC-----CChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHH
Q 037404 337 INKYRFK-----CNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-----KD----LVSWNAMLYGLAMHGQGEKALGLFSR 402 (605)
Q Consensus 337 ~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~ 402 (605)
..+.... .-..+++.+..+|...|++++|...|++... .+ ..++..+...|.. |++++|+..|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 6543211 1134677777888888888888887775441 11 2466677777777 888888888888
Q ss_pred HHHCCCCC-C----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCCc-hHHHHHHHHHhhhcCCHHHHHHHHHh
Q 037404 403 MKDEGFGP-D----KYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILPQ-VEHYGCMIDLLGRSGRLKEALRLVQS 473 (605)
Q Consensus 403 m~~~g~~p-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 473 (605)
..+..... + ..++..+...+...|++++|+..|+++.... +..+. ...+..++..+...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77632111 1 3456777778888888888888888776521 11111 22556666777777888888888877
Q ss_pred CCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 037404 474 MPVEPN------AIIWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 474 ~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 501 (605)
.-..|+ ...+..++.++ ..|+.+.+..
T Consensus 221 al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 221 SYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 533332 12233444444 4566655555
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.92 E-value=3.9e-08 Score=103.43 Aligned_cols=190 Identities=10% Similarity=-0.004 Sum_probs=145.2
Q ss_pred HccCchHHHHHHHHHHH--------HcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHc
Q 037404 322 AESGLLGLGMKVHASIN--------KYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMH 390 (605)
Q Consensus 322 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~ 390 (605)
...|++++|.+.++.+. +.. +.+...+..+..++...|++++|...|+++. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67888899998888887 332 3456778888999999999999999998776 45778899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGP-DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALR 469 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 469 (605)
|++++|+..|++..+. .| +...+..+..++...|++++ .+.|+++.+ -.+.+...+..+..++.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999885 44 55778888889999999999 999999987 234467789999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhcCCCCchH
Q 037404 470 LVQSM-PVEPN-AIIWGTLLGACRKHNA-----VELAEEVLDCLIRLKGSDPGNY 517 (605)
Q Consensus 470 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~~~ 517 (605)
.|+++ ...|+ ...+..+..++...++ .+...+..+...+..+.++...
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99998 56676 4577777777766555 2333333444444444555433
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.91 E-value=1.2e-08 Score=81.44 Aligned_cols=115 Identities=8% Similarity=-0.030 Sum_probs=95.5
Q ss_pred CCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHH
Q 037404 408 FGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWG 484 (605)
Q Consensus 408 ~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~ 484 (605)
+.|+. ..+......|.+.|++++|++.|+++.+ -.+.+...|..++.+|.+.|++++|++.+++. .+. .+...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 44543 4566777788889999999999998877 34556788888999999999999999999887 333 4577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
.++.++...|++++|++.|+++++++|+++.++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999888887653
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.91 E-value=2.4e-08 Score=103.17 Aligned_cols=146 Identities=9% Similarity=-0.091 Sum_probs=71.4
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFS 401 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 401 (605)
|++++|...++++.+.. +.+...+..+...+...|++++|.+.|++.. +.+...|..+...|...|++++|...++
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45555666665555433 2234555556666666666666666665443 2234555555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc---CCHHHHHHHHHhC
Q 037404 402 RMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS---GRLKEALRLVQSM 474 (605)
Q Consensus 402 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 474 (605)
+..+.. +.+...+..+..++...|++++|.+.++++.+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 655532 223445555555666666666666666665551 223345555556666665 6666666666554
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.91 E-value=2.1e-07 Score=87.00 Aligned_cols=161 Identities=7% Similarity=-0.085 Sum_probs=123.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHH
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGF-GPDKY----TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYG 452 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 452 (605)
..+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887421 22221 2334666778888999999999999872122223 33688
Q ss_pred HHHHHhhhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchH
Q 037404 453 CMIDLLGRSGRLKEALRLVQSMP-----V---EPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNY 517 (605)
Q Consensus 453 ~l~~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 517 (605)
.++..|...|++++|..+++++- . .+. ..++..++..|.+.|++++|...++++++..+.. +.++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999988761 1 122 2377889999999999999999999999875332 5679
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHh
Q 037404 518 TMLSNIFAATGD-WNKVANVRLQMKK 542 (605)
Q Consensus 518 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 542 (605)
..++.+|.+.|+ +++|.+.++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999999875
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=3.7e-08 Score=87.24 Aligned_cols=128 Identities=15% Similarity=-0.011 Sum_probs=70.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
+..+...+...|++++|+..|++. +.|+...+..+..++...|++++|...++++... .+.+...+..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 344455555666666666666544 2445555666666666666666666666666551 2334455555556666
Q ss_pred hcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 037404 460 RSGRLKEALRLVQSM-PVEP-N----------------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD 513 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 513 (605)
..|++++|.+.|+++ ...| + ...+..++.++...|++++|...++++++..|.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 666666666655554 1111 1 1445555555555666666666666666555554
No 114
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.90 E-value=6.5e-08 Score=90.51 Aligned_cols=164 Identities=6% Similarity=-0.103 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCC--CCc--hH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDK-----YTFVGVLCACTHAGFIDKGVQYFYSMERDYGI--LPQ--VE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~--~~ 449 (605)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++++...... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677788899999999999888775322111 12334556678889999999999988752111 111 45
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--C----C
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM----PVEPN-----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--D----P 514 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~----~ 514 (605)
+++.++..|...|++++|...++++ ...|+ ..++..++..|...|++++|...++++++..+. + .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7889999999999999999999876 11122 257888999999999999999999999987432 1 4
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHHHh
Q 037404 515 GNYTMLSNIFAATGDWNKV-ANVRLQMKK 542 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 542 (605)
.++..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5788999999999999999 888888875
No 115
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=2.7e-08 Score=87.69 Aligned_cols=156 Identities=14% Similarity=0.024 Sum_probs=115.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHH----------------HHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 383 MLYGLAMHGQGEKALGLFSRMKDEGFGPD-KYTFVG----------------VLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 383 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
....+...|++++|+..|++..+. .|+ ...+.. +..++...|++++|...++++.+ -.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
Confidence 344556677777777777776663 343 334444 78889999999999999999988 344
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNA--VELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
.+...+..++..|...|++++|.+.|+++ ...| +...+..++.++...|+ .+.+...++++....|. ...+..++
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~~~g 164 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARYRDG 164 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHHHHH
Confidence 56888999999999999999999999998 4444 56788888888866553 44556666665432221 22466778
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|+..++++.+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8889999999999999999985
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.87 E-value=3.6e-07 Score=84.56 Aligned_cols=228 Identities=10% Similarity=0.030 Sum_probs=123.8
Q ss_pred hCCC-hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccC--chHHHHHHHHHHHHcCCCCChhHHHHHHHHH----Hhc
Q 037404 288 EKGM-AKEAARLYDQMEEAGLKPDD-GTLISILAACAESG--LLGLGMKVHASINKYRFKCNTNVCNALVDMY----AKC 359 (605)
Q Consensus 288 ~~~~-~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 359 (605)
+.|. .++|+.++..++.. .|+. ..++.--.++...+ +++++..++..+...+.. +..+|+.-...+ ...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 4444 45788888888874 4443 34555555566666 777777777777765532 344444333333 333
Q ss_pred ---CChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC----
Q 037404 360 ---GSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGE--KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF---- 427 (605)
Q Consensus 360 ---g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 427 (605)
+++++++.+++++. +++..+|+.-...+...|.++ ++++.++++.+.. .-|...|+.-...+...+.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchh
Confidence 56666666666554 345555655555555666665 6666666666643 2244455544444444444
Q ss_pred --HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHH
Q 037404 428 --IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE-ALRLVQSM-PV----EPNAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 428 --~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~A 499 (605)
++++++.+..++. ..+-|...|+.+...+.+.|+..+ +..+..+. .. ..+...+..++.++.+.|+.++|
T Consensus 200 ~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 200 NTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 5556666655555 234455555555555555555333 33344443 11 22444555555555555666666
Q ss_pred HHHHHHHHh-hcCCCCchHHHHH
Q 037404 500 EEVLDCLIR-LKGSDPGNYTMLS 521 (605)
Q Consensus 500 ~~~~~~~~~-~~p~~~~~~~~l~ 521 (605)
.++++.+.+ .+|.....|...+
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHHH
Confidence 666666554 4555555444433
No 117
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.84 E-value=5.1e-08 Score=82.26 Aligned_cols=127 Identities=7% Similarity=-0.037 Sum_probs=100.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACR 491 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~ 491 (605)
.+..+...+...|++++|...++++.. ..+.+...+..++..+...|++++|.+.+++. .. +.+...+..++.++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455566667777888888888877766 23445677778888888888888888888876 22 345778888999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH--HHhcCChHHHHHHHHHHHh
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI--FAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~ 542 (605)
..|++++|...++++++..|.++..+..+..+ +...|++++|++.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999999998887555544 8888999999999988765
No 118
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=3.5e-08 Score=84.38 Aligned_cols=157 Identities=13% Similarity=-0.036 Sum_probs=113.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hc
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCA-CT 423 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~ 423 (605)
.+..+...+...|++++|...|++.. +.+...+..+...+...|++++|+..+++.... .|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 34556677788888888888888877 346677888888888888888888888887654 3344332222211 11
Q ss_pred ccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN---AIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A 499 (605)
..+....|...++++.+ ..+.+...+..+...+...|++++|...|+++ ...|+ ...+..++..+...|+.++|
T Consensus 86 ~~~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred hhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 22233346788888776 23445788888999999999999999999887 44554 55788888899999999999
Q ss_pred HHHHHHHHh
Q 037404 500 EEVLDCLIR 508 (605)
Q Consensus 500 ~~~~~~~~~ 508 (605)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 119
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.84 E-value=2.5e-08 Score=81.74 Aligned_cols=98 Identities=11% Similarity=0.021 Sum_probs=86.3
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..+...+.+.|++++|...|+++ .. +.+...|..+..++...|++++|+..++++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4456667788889999999999999987 33 346778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 037404 525 AATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~ 544 (605)
...|++++|++.++++.+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998753
No 120
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.84 E-value=3.5e-08 Score=91.85 Aligned_cols=134 Identities=8% Similarity=-0.059 Sum_probs=114.0
Q ss_pred CCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-
Q 037404 409 GPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNAIIWGTL- 486 (605)
Q Consensus 409 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l- 486 (605)
+.+...+..+...+...|++++|...|+++.+ ..+.+...+..++..+.+.|++++|...++++ ...|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 33456677788889999999999999999987 34556788999999999999999999999998 456766543333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
...+...++.++|+..++++++.+|+++..+..++.+|...|++++|+..++++.+..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~ 249 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD 249 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 3446677888999999999999999999999999999999999999999999999864
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=4.8e-08 Score=78.11 Aligned_cols=96 Identities=10% Similarity=-0.067 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..++..+.+.|++++|.+.|++. .. +.+...|..++.++...|++++|+..++++++.+|.++..+..++.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456677788888999999999999887 33 3457788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037404 526 ATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~ 543 (605)
..|++++|+..+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999999874
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=3.4e-06 Score=78.03 Aligned_cols=212 Identities=12% Similarity=0.116 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhcCC---CCChhHHHHHHHHH----HHc---CChH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG--SLDNAMSVFNGMT---KKDLVSWNAMLYGL----AMH---GQGE 394 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~----~~~---~~~~ 394 (605)
.++|...+..+...+.. +..+++.-..++...| ++++++++++.+. +.+..+|+.-...+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 35777888888776533 5566777778888888 9999999999876 44666777665555 555 7899
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHH--HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC------HHH
Q 037404 395 KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFID--KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR------LKE 466 (605)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 466 (605)
+++.+++++.+.. +-|..+|..-..++...|.++ ++++.++++.+ ..+-|...|+.-...+.+.|. +++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 9999999999864 346777777777777788887 99999999988 345577788877777777776 899
Q ss_pred HHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhc---CCCCchHHHHHHHHHhcCChHHHHHHHHHH
Q 037404 467 ALRLVQSM--PVEPNAIIWGTLLGACRKHNAV-ELAEEVLDCLIRLK---GSDPGNYTMLSNIFAATGDWNKVANVRLQM 540 (605)
Q Consensus 467 A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 540 (605)
+++.++++ ..+-|...|+.+...+.+.|+. +.+..++.++.+.+ |.++.++..++.+|.+.|+.++|+++++.+
T Consensus 205 El~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 205 ELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999887 2345677888888888888774 44666888777765 788889999999999999999999999998
Q ss_pred Hh
Q 037404 541 KK 542 (605)
Q Consensus 541 ~~ 542 (605)
.+
T Consensus 285 ~~ 286 (306)
T 3dra_A 285 KS 286 (306)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 123
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=8.8e-08 Score=85.60 Aligned_cols=184 Identities=13% Similarity=0.018 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Chh---HHHH
Q 037404 311 DGTLISILAACAESGLLGLGMKVHASINKYRFKC--NTNVCNALVDMYAKCGSLDNAMSVFNGMTK--K-DLV---SWNA 382 (605)
Q Consensus 311 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~---~~~~ 382 (605)
...+......+...|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | +.. .+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455667778899999999999999998765332 235778889999999999999999998762 2 322 4555
Q ss_pred HHHHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcccCCHHHHHHHHHHhHHhhC
Q 037404 383 MLYGLAM------------------HGQGEKALGLFSRMKDEGFGPDKY-TFVGVLCACTHAGFIDKGVQYFYSMERDYG 443 (605)
Q Consensus 383 l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 443 (605)
+..++.. .|++++|+..|+++.+. .|+.. ....... ...+....
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~----- 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHH-----
Confidence 5555554 57899999999999985 45432 2221111 00111111
Q ss_pred CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 444 ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
......++..|.+.|++++|...|+++ ...|+ ...+..++.++.+.|++++|+..++.+....|++..
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 112245678889999999999999987 33333 246788899999999999999999999988887654
No 124
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.80 E-value=1.9e-08 Score=86.17 Aligned_cols=121 Identities=8% Similarity=0.078 Sum_probs=94.0
Q ss_pred hcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH-HHhcCCH--
Q 037404 422 CTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGA-CRKHNAV-- 496 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~-~~~~g~~-- 496 (605)
+...|++++|...++.... ..+.+...+..++..|...|++++|...|+++ .. +.+...+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcch
Confidence 3456777888888887776 23446677888888888888888888888877 22 2356677778887 7788888
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++|+..++++++.+|.++..+..++.++...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999998854
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=5.1e-06 Score=83.26 Aligned_cols=367 Identities=9% Similarity=-0.039 Sum_probs=196.5
Q ss_pred hCC-CchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHH
Q 037404 92 QNS-LNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSL 170 (605)
Q Consensus 92 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 170 (605)
+.| +++.|..+|+.+... -|. ++.+.+..+|+..+.. .|+...|...+....+.+. ..+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~-~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQ-KKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----C
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCc-hHHH
Confidence 456 478888888888764 233 8899999999998874 4688888888888877762 2344
Q ss_pred HHHHHhccC-----C-CCeehHHHHHHHHH----hCCChhHHHHHHhhcCC-CCcchHHHHHHHHHc---CCChHHHHHH
Q 037404 171 AKKLFMSMG-----E-RDIVSWNSMIAGLV----KGGELSEARRLFDEMPE-RDAVSWNTILDGYAK---AGEMNLAFEL 236 (605)
Q Consensus 171 a~~~~~~~~-----~-~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~-~~~~~~~~ll~~~~~---~~~~~~a~~~ 236 (605)
...+|+... . .+...|...+..+. .+|+.+.+..+|++.+. |. ..+..+-..|.. ......+..+
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~-~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM-GSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC-TTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChh-hhHHHHHHHHHHHHHHhccccHHHH
Confidence 555555432 1 24556776666543 24567778888888733 21 112222222211 1111222222
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCcccHHHHHHHHHhCC--C-----hHHHHHHHHHHHHc
Q 037404 237 FEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP----AKTLVPWTIIISGYAEKG--M-----AKEAARLYDQMEEA 305 (605)
Q Consensus 237 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~m~~~ 305 (605)
+.+ .. +.+..|..+++.+. ..+...|...+..-...+ - .+.+..+|++++..
T Consensus 146 ~~~---------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~ 208 (493)
T 2uy1_A 146 VGD---------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS 208 (493)
T ss_dssp HHH---------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHH---------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc
Confidence 211 00 11222222222111 012223544444322211 0 34566788887775
Q ss_pred CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH-HHHHhcCC-----------
Q 037404 306 GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNA-MSVFNGMT----------- 373 (605)
Q Consensus 306 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~----------- 373 (605)
. +.+...|...+..+.+.|+++.|..++++.... +.+...+.. |....+.++. ..+.+...
T Consensus 209 ~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 209 F-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp T-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------C
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhc
Confidence 3 445666776777777888888888888888877 333333322 2221111111 11111110
Q ss_pred -CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc-cCCHHHHHHHHHHhHHhhCCCCchHHH
Q 037404 374 -KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTH-AGFIDKGVQYFYSMERDYGILPQVEHY 451 (605)
Q Consensus 374 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~ 451 (605)
......|...+..+.+.++.+.|..+|++. .. ...+...|......-.. .++.+.|..+|+...+.. +.++..+
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~ 357 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHH
Confidence 001234555666666667778888888777 21 11233333322222112 235777888887777743 2234445
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.+
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666677777777777777763 2456666666666667777777777777664
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.79 E-value=8.2e-08 Score=77.45 Aligned_cols=116 Identities=9% Similarity=-0.012 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGA 489 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 489 (605)
...+..+...+...|++++|...++++.. ..+.+...+..++..+...|++++|.+.++++ .. +.+...+..++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34555566666666666666666666654 22335566666777777777777777777665 22 2356677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
+...|++++|...++++++..|.++..+..++.++...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888999999999999988888888888888888877664
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.79 E-value=8e-08 Score=77.13 Aligned_cols=118 Identities=8% Similarity=-0.070 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGA 489 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 489 (605)
...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|.+.+++. .. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345566666777778888888888777662 3445667777888888888888888888776 22 3346788888899
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChH
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWN 531 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 531 (605)
+...|++++|...++++.+..|.++..+..++.++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998888763
No 128
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=4.6e-07 Score=79.91 Aligned_cols=173 Identities=9% Similarity=-0.086 Sum_probs=119.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 037404 330 GMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVSWNAMLYGLAMHG----QGEKALGLFSRMK 404 (605)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~A~~~~~~m~ 404 (605)
|.+.|+...+.| ++..+..+...|...+++++|...|++..+ .++..+..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444444433 455566666666666677777666665543 355566666666665 5 7888888888887
Q ss_pred HCCCCCCHHHHHHHHHHhcc----cCCHHHHHHHHHHhHHhhCCC-CchHHHHHHHHHhhh----cCCHHHHHHHHHhC-
Q 037404 405 DEGFGPDKYTFVGVLCACTH----AGFIDKGVQYFYSMERDYGIL-PQVEHYGCMIDLLGR----SGRLKEALRLVQSM- 474 (605)
Q Consensus 405 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~- 474 (605)
+.| +...+..+...|.. .+++++|..+|++..+ .+.. .++..+..|...|.. .+++++|.+.|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 754 56667777777776 7888999999988865 1211 126777888888887 78899999999887
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhc
Q 037404 475 PVEPNAIIWGTLLGACRKH-N-----AVELAEEVLDCLIRLK 510 (605)
Q Consensus 475 ~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 510 (605)
...++...+..|...|... | ++++|...++++.+..
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3335566777777777653 3 8999999999988864
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.78 E-value=1.2e-07 Score=75.32 Aligned_cols=115 Identities=18% Similarity=0.143 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 037404 412 KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGA 489 (605)
Q Consensus 412 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 489 (605)
...+..+...+...|++++|...++++... .+.+...+..++..+...|++++|...++++ . .+.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666677777777777777777662 2345666777777777888888888877776 2 23456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
+...|++++|...++++.+..|.++..+..++.++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888999999999999999988988888888888876654
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=1.9e-07 Score=82.52 Aligned_cols=120 Identities=9% Similarity=-0.012 Sum_probs=57.4
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~ 496 (605)
...+...|++++|...++++. .|+...+..++..|.+.|++++|.+.+++. .. +.+...+..++.++...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 334444455555555554432 234444455555555555555555555444 11 22334444445555555555
Q ss_pred HHHHHHHHHHHhhcCCCC----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 497 ELAEEVLDCLIRLKGSDP----------------GNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++|+..++++++..|.+. .++..++.+|...|++++|.+.++++.+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 555555555555444444 44455555555555555555555555443
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.74 E-value=1.8e-08 Score=93.45 Aligned_cols=191 Identities=10% Similarity=-0.064 Sum_probs=119.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCAC 422 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 422 (605)
...+..+...+...|++++|...|++.. +.+...|..+..+|...|++++|+..+++..+.. +.+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4455566666777777777777776554 3356677777777777888888888887777642 23456677777778
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCch-HHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQV-EHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEE 501 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 501 (605)
...|++++|...|+++.+.. |+. ..+...+....+..+...... .......++......+.. + ..|++++|++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~ 156 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELE 156 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHH
Confidence 88888888888887776521 211 011111111111111111111 222233334444333332 2 3688999999
Q ss_pred HHHHHHhhcCCCCchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 037404 502 VLDCLIRLKGSDPGNYTMLSNIFAAT-GDWNKVANVRLQMKKT 543 (605)
Q Consensus 502 ~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 543 (605)
.++++.+.+|.+......+...+.+. +++++|.+++.++.+.
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 157 ECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 99999999998887777777777766 7799999999988764
No 132
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.73 E-value=9.4e-08 Score=91.11 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=83.4
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...|..+..+|.+.|++++|+..++++ .+. .+...+..+..++...|++++|+..|+++++++|.++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 467888899999999999999999887 333 457789999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHHh
Q 037404 526 ATGDWNKV-ANVRLQMKK 542 (605)
Q Consensus 526 ~~g~~~~A-~~~~~~~~~ 542 (605)
+.|++++| ...+++|.+
T Consensus 276 ~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99999999 556777654
No 133
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.73 E-value=6.2e-07 Score=89.88 Aligned_cols=331 Identities=8% Similarity=-0.017 Sum_probs=159.5
Q ss_pred CChhHHHHHHhhcCC--CCcchHHHHHHHHHcCCC-hHHHHHHHHhCC------CCChhHHHHHHHHHH----hcCCHHH
Q 037404 197 GELSEARRLFDEMPE--RDAVSWNTILDGYAKAGE-MNLAFELFEKIP------HRNIVSWSTMVWGYS----KDGDMEM 263 (605)
Q Consensus 197 g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~------~~~~~~~~~l~~~~~----~~~~~~~ 263 (605)
|+++.+..+|++.+. |+...|..-+....+.++ .+....+|+... ..+...|...+..+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 788888888888843 666666666665555442 233444555433 234566666666543 2456777
Q ss_pred HHHHHhhCCCCCcccHHHHHHHHHh---C--------------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 037404 264 AKLLFDRMPAKTLVPWTIIISGYAE---K--------------GMAKEAARLYDQMEEAGLKPDDGTLISILAACAES-- 324 (605)
Q Consensus 264 a~~~~~~~~~~~~~~~~~l~~~~~~---~--------------~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-- 324 (605)
+.++|++........+..+-..|.. . +.+..|..+++.+...-...+...|...+.--...
T Consensus 108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~ 187 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM 187 (493)
T ss_dssp HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence 8888887755222222222222211 1 11222333333332210001122333322222111
Q ss_pred Cc-----hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHHHHHHHHHHcCChHHHH
Q 037404 325 GL-----LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTK--KDLVSWNAMLYGLAMHGQGEKAL 397 (605)
Q Consensus 325 ~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~ 397 (605)
+- .+.+..+|+++.... +.+..+|...+..+.+.|+.+.|..++++... .+...|. .|+...+.++.
T Consensus 188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~- 261 (493)
T 2uy1_A 188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV- 261 (493)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH-
T ss_pred cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH-
Confidence 00 233455666665543 33455666666666666777777776664432 2222222 12221111111
Q ss_pred HHHHHHHHCC---------CCC---CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-CH
Q 037404 398 GLFSRMKDEG---------FGP---DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG-RL 464 (605)
Q Consensus 398 ~~~~~m~~~g---------~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~ 464 (605)
++.+.+.- ..+ ....|...+....+.+..+.|..+|+.+ .. . ..+...|...+..-...+ +.
T Consensus 262 --~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 262 --YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp --HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCCh
Confidence 22222110 001 1123444445555566677777777766 31 1 123334433332222223 57
Q ss_pred HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 465 KEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 465 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.|.++|+.. ..+.++..+...+......|+.+.|+.+++++ +.+...+...+..-...|+.+.+.++++++.+
T Consensus 337 ~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777665 12122344455555556667777777777775 23345566666666666777777777776664
No 134
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.70 E-value=9.6e-08 Score=74.24 Aligned_cols=100 Identities=13% Similarity=0.080 Sum_probs=86.4
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS--DPGNYTMLSN 522 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 522 (605)
+...+..++..+...|++++|...++++ . .+.+...+..++..+...|++++|...++++++..|. ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4456677788888899999999988877 2 2345778888999999999999999999999999999 9999999999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCC
Q 037404 523 IFAAT-GDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 523 ~~~~~-g~~~~A~~~~~~~~~~~~~ 546 (605)
++... |++++|++.++++.+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999 9999999999999987543
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.70 E-value=1.7e-07 Score=84.55 Aligned_cols=124 Identities=11% Similarity=-0.050 Sum_probs=85.6
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHHHh
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNA----IIWGTLLGACRK 492 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~~~~~l~~~~~~ 492 (605)
.+...+...|++++|.++|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. ..+..+..++..
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH
Confidence 345566777888888888877754 2243335556666777888888888888766333322 356667777888
Q ss_pred cCCHHHHHHHHHHHHhhc--CC-CCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 493 HNAVELAEEVLDCLIRLK--GS-DPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 493 ~g~~~~A~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.|++++|+..|+++.... |. .+......+.++.+.|+.++|..+|+++...
T Consensus 184 LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 184 LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888877532 33 3446777888888888888888888888774
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.69 E-value=7.8e-08 Score=76.09 Aligned_cols=95 Identities=15% Similarity=-0.013 Sum_probs=83.9
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
.+..++..+.+.|++++|...|+++ ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3556777888999999999999988 3334 6778889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 037404 528 GDWNKVANVRLQMKKTR 544 (605)
Q Consensus 528 g~~~~A~~~~~~~~~~~ 544 (605)
|++++|+..++++.+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999998754
No 137
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=2.2e-06 Score=79.99 Aligned_cols=159 Identities=13% Similarity=0.022 Sum_probs=121.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---Ch------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHH
Q 037404 351 ALVDMYAKCGSLDNAMSVFNGMTKK---DL------VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PD----KYTFV 416 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~ 416 (605)
..+..+...|++++|...+++.... +. ..+..+...+...+++++|+..+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999876532 11 13334666677788999999999999874322 22 23688
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhh----CCCC-chHHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDY----GILP-QVEHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIW 483 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~ 483 (605)
.+..+|...|++++|...++++.+.. +..+ ...++..++..|.+.|++++|.+.+++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999999999987521 1122 2347888999999999999999999876 12222 5688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhh
Q 037404 484 GTLLGACRKHN-AVELAEEVLDCLIRL 509 (605)
Q Consensus 484 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 509 (605)
..++.++...| ++++|...+++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999999 579999999999875
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.67 E-value=5.8e-08 Score=80.06 Aligned_cols=109 Identities=9% Similarity=-0.052 Sum_probs=88.2
Q ss_pred CCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 037404 409 GPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGT 485 (605)
Q Consensus 409 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 485 (605)
.|+ ...+..+...+...|++++|...|+.+.. ..+.+...|..+..+|...|++++|++.|+++ ...| +...+..
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 443 34566677788889999999999998877 34457778888999999999999999999887 3333 5678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
++.++...|++++|+..++++++..|+++.....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 9999999999999999999999999988876443
No 139
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.67 E-value=1.3e-07 Score=75.57 Aligned_cols=95 Identities=6% Similarity=0.006 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-------hHHH
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-------NYTM 519 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-------~~~~ 519 (605)
..+..++..+.+.|++++|++.|+++ .+.| +...|..++.+|...|++++|+..+++++++.|.++. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45677888899999999999999887 3334 4778888999999999999999999999999877653 6777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 037404 520 LSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++.++...|++++|++.+++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888899999999999999998873
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.66 E-value=1.4e-07 Score=79.54 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=46.6
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACR 491 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 491 (605)
.+..+...+...|++++|+..|+++.+. .+.+...+..+..+|.+.|++++|+..|++. .+.| +...|..+..++.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444455555555555555554441 1223444444444445555555555544444 1122 2334444444444
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
..|++++|+..++++++++|+++..
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHH
Confidence 4555555555555555544444443
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.66 E-value=3e-07 Score=75.64 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=88.2
Q ss_pred CCCC-HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037404 408 FGPD-KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWG 484 (605)
Q Consensus 408 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 484 (605)
+.|+ ...+..+...+.+.|++++|...|+.+.. -.+.+...|..++.+|...|++++|++.|+++ .+.| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 3453 34677777889999999999999999987 34557888999999999999999999999988 3344 467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 514 (605)
.++.++...|++++|+..|++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999998764
No 142
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.1e-07 Score=74.51 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=86.1
Q ss_pred CchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 446 PQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
.+...+..++..+...|++++|...|++. .. +.+...+..++.++...|++++|...++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45677888888888999999999988876 22 34577888899999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 037404 524 FAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+...|++++|+..++++.+..
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999998754
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=6.2e-07 Score=78.46 Aligned_cols=153 Identities=8% Similarity=-0.035 Sum_probs=88.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCC-chHHHHHHHHHhhhcCCH
Q 037404 389 MHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILP-QVEHYGCMIDLLGRSGRL 464 (605)
Q Consensus 389 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~ 464 (605)
..|++++|.+.++.+... .......+..+...+...|++++|...+++..... +..+ ....+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 11233445555555666666666666665554411 1111 234556666667777777
Q ss_pred HHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--CCC----chHHHHHHHHHhcCC
Q 037404 465 KEALRLVQSM-PV---EP-N----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKG--SDP----GNYTMLSNIFAATGD 529 (605)
Q Consensus 465 ~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~ 529 (605)
++|.+.+++. .. .+ + ...+..+...+...|++++|...++++++..+ .++ .++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666654 10 11 2 23566677777888888888888888876532 222 235678888888888
Q ss_pred hHHHHHHHHHHHh
Q 037404 530 WNKVANVRLQMKK 542 (605)
Q Consensus 530 ~~~A~~~~~~~~~ 542 (605)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888776
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=1.9e-06 Score=80.40 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=119.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC---CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMTK---KDL------VSWNAMLYGLAMHGQGEKALGLFSRMKDEGF---GPD--KY 413 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 413 (605)
.+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778888999999888875431 111 2234456667788899999999999875321 222 34
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHh---hCCCC--chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC------CC-CH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERD---YGILP--QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV------EP-NA 480 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~ 480 (605)
+++.+...|...|++++|...++++... .+..+ ...++..++..|...|++++|.+.+++. .+ .. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999998732 12112 1258889999999999999999999876 11 11 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 037404 481 IIWGTLLGACRKHNAVELA-EEVLDCLIRL 509 (605)
Q Consensus 481 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 509 (605)
.++..++.++...|++++| ...++++..+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788899999999999999 8889988875
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.63 E-value=4e-07 Score=71.40 Aligned_cols=96 Identities=14% Similarity=0.049 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..++..+...|++++|.+.+++. .. +.+...+..++..+...|++++|...++++.+..|.++..+..++.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 345556666677777777777777766 22 2356666777777777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037404 526 ATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~ 543 (605)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 777777777777777764
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=3.5e-07 Score=78.09 Aligned_cols=128 Identities=7% Similarity=-0.004 Sum_probs=99.7
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH-hhhcCCH--
Q 037404 388 AMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL-LGRSGRL-- 464 (605)
Q Consensus 388 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 464 (605)
...|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++... .+.+...+..++.. +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888888888887753 346678888888899999999999999998773 23466777888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 465 KEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
++|...++++ ...| +...+..++..+...|++++|...++++++..|.++....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence 9999999887 3334 4678888999999999999999999999999999876543
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.60 E-value=3.4e-07 Score=79.85 Aligned_cols=167 Identities=8% Similarity=-0.079 Sum_probs=101.4
Q ss_pred HHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 356 YAKCGSLDNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
....|+++.+.+.++.-... ....+..+...+...|++++|+..|++..+.. |+...+...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~-------------- 77 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ-------------- 77 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------------
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------------
Confidence 34445555555555432211 33456666666777777777777777766632 211000000
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 510 (605)
....-.. ......+..+..+|.+.|++++|+..++++ .. +.+...+..++.++...|++++|+..++++++..
T Consensus 78 -~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 78 -ILLDKKK----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp -HHHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred -hHHHHHH----HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 0000000 001356777888888999999999988887 32 3457788889999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 037404 511 GSDPGNYTMLSNIFAATGDWNKVA-NVRLQMKKT 543 (605)
Q Consensus 511 p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 543 (605)
|.++.++..++.++...|+.+++. ..+..+...
T Consensus 153 p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 153 PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999998888877 556655543
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.59 E-value=4.2e-07 Score=73.12 Aligned_cols=99 Identities=15% Similarity=0.081 Sum_probs=90.0
Q ss_pred CCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
+.+...+..++..+...|++++|.+.+++. ...| +...+..++..+...|++++|+..++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345678888999999999999999999987 4444 67788999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 037404 523 IFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++...|++++|++.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999875
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=7.1e-07 Score=69.92 Aligned_cols=110 Identities=13% Similarity=0.015 Sum_probs=83.3
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGAC 490 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 490 (605)
..+..+...+...|++++|...++.+.. ..+.+...+..++..+...|++++|...+++. ... .+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4455566667777777777777777766 23345667777778888888888888888776 223 3567788888899
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
...|++++|...++++.+..|.++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999888877777654
No 150
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=6e-07 Score=73.84 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=74.1
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+...+..++..+...|++++|.+.|++. ...|+ ...+..+..++...|++++|+..++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 4556667777777777888887777776 45565 456777777778888888888888888888888877888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 037404 522 NIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.++...|++++|...+++..+.
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHc
Confidence 8888888888888888887763
No 151
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.59 E-value=1.3e-06 Score=78.87 Aligned_cols=137 Identities=13% Similarity=-0.052 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc--hHHHHHHHHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ--VEHYGCMIDL 457 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 457 (605)
+..+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.... .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344566778888888888888877664 35444555555678889999999999986644 11 221 3467788999
Q ss_pred hhhcCCHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM--P-VEPN--AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+...|++++|++.|++. + ..|. .........++.+.|+.++|...|+++...+|. +.+...|.
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 99999999999999987 2 2143 346677888899999999999999999999998 66655553
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.58 E-value=5.4e-07 Score=71.47 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=87.5
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..++..+...|++++|.+.++++ . .+.+..++..++..+...|++++|...++++.+..|.++..+..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 2 23467788899999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 037404 526 ATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 526 ~~g~~~~A~~~~~~~~~~ 543 (605)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999999875
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.57 E-value=6.5e-07 Score=71.40 Aligned_cols=111 Identities=12% Similarity=-0.070 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGAC 490 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 490 (605)
..+......+...|++++|...|++..+ -.+.+...+..++.+|.+.|++++|++.+++. ...| +...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3455566667778888888888887776 23445677888888888888888888888877 3334 467888889999
Q ss_pred HhcCCHHHHHHHHHHHHhhc------CCCCchHHHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLK------GSDPGNYTMLSNIFA 525 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~ 525 (605)
...|++++|...++++++.+ |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999998 887777777766653
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.57 E-value=4.5e-07 Score=74.16 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGAC 490 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~ 490 (605)
..+..+...+...|++++|...|+.+.. ..+.+...|..+..+|.+.|++++|...|+++ ... .+...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455566677788888888888888876 23446777888888888888999988888887 223 3466778888999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHH
Q 037404 491 RKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNI 523 (605)
Q Consensus 491 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 523 (605)
...|++++|...++++++..|.++........+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 999999999999999999999888765554433
No 155
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.56 E-value=4.9e-07 Score=75.90 Aligned_cols=64 Identities=6% Similarity=0.011 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888899999999999999999999999999999999999999999999999999999884
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.56 E-value=2.8e-07 Score=74.84 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=74.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-PVEPN-------------AIIWGTLLGACRKHNAVELAEEVLDCLIRL------- 509 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 509 (605)
+...+..+.+.|++++|++.|++. .+.|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344455555666666666666554 22222 338889999999999999999999999999
Q ss_pred cCCCCchH----HHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 KGSDPGNY----TMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 ~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|+++..| +..+.++...|++++|+..|++..+.
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999885
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=5.6e-07 Score=78.71 Aligned_cols=153 Identities=12% Similarity=-0.012 Sum_probs=102.6
Q ss_pred hcCChHHHHH---HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHhcccCCHH
Q 037404 358 KCGSLDNAMS---VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKD----EGFGP-DKYTFVGVLCACTHAGFID 429 (605)
Q Consensus 358 ~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~ 429 (605)
..|++++|.+ .+..-......++..+...+...|++++|...+++..+ .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566667766 44432223445667777777778888888887777665 12122 2345667777888888888
Q ss_pred HHHHHHHHhHHhh---CCCC--chHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 037404 430 KGVQYFYSMERDY---GILP--QVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN----AIIWGTLLGACRKHNAV 496 (605)
Q Consensus 430 ~a~~~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~ 496 (605)
+|...+++..... +..| ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 8888888776631 2111 2345777888888899999998888776 11122 23457788889999999
Q ss_pred HHHHHHHHHHHhhc
Q 037404 497 ELAEEVLDCLIRLK 510 (605)
Q Consensus 497 ~~A~~~~~~~~~~~ 510 (605)
++|...++++.++.
T Consensus 164 ~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 164 LEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988863
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.55 E-value=1.1e-06 Score=73.88 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=71.3
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++..+..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456666777777777777777777776 2223 5667777777777777777777777777777777777777777777
Q ss_pred HhcCChHHHHHHHHHHHhCCC
Q 037404 525 AATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...|++++|+..+++..+...
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHS
T ss_pred HHccCHHHHHHHHHHHHHhCC
Confidence 777777777777777766543
No 159
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=5.9e-07 Score=71.91 Aligned_cols=97 Identities=9% Similarity=0.006 Sum_probs=88.2
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...+..++..+...|++++|.+.++++ . .+.+...+..++..+...|++++|...++++.+..|.++..+..++.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788899999999999999999987 2 2346778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 037404 525 AATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~~ 543 (605)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999885
No 160
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.53 E-value=1.9e-06 Score=72.34 Aligned_cols=129 Identities=12% Similarity=-0.039 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++... ..+.+...+..++..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHH
Confidence 456667777888888888888888887753 33567777888888888999999998888877 234567788888888
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWG--TLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
+...|++++|.+.++++ ...| +...+. ..+..+...|++++|...+.+....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999998887 2223 344443 3344467788999999988877664
No 161
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=8.7e-05 Score=69.36 Aligned_cols=229 Identities=10% Similarity=0.069 Sum_probs=143.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc-C-Ch
Q 037404 287 AEKGMAKEAARLYDQMEEAGLKPD-DGTLISILAACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKC-G-SL 362 (605)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 362 (605)
...+..++|++++.+++.. .|+ ...++.--.++...| +++++..++..+..... .+..+|+.-..++... + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCCh
Confidence 3445557888888888875 344 344555555555666 48888888888887653 3566676666666665 6 78
Q ss_pred HHHHHHHhcCCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC----
Q 037404 363 DNAMSVFNGMTKK---DLVSWNAMLYGLAMHGQGE--------KALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF---- 427 (605)
Q Consensus 363 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 427 (605)
++++++++++... |..+|+--...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 8888888887744 5566665555555555555 8888888888864 3366677776666666665
Q ss_pred ---HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH--------------------HHHHHHHHhC-CC-------
Q 037404 428 ---IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL--------------------KEALRLVQSM-PV------- 476 (605)
Q Consensus 428 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~------- 476 (605)
++++++.+.+++. ..+-|...|+.+-..+.+.|+. .+..+...++ ..
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 6778888887776 3455677777766666665543 2333333333 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhcCCCCchHHHHH
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEVLDCLI-RLKGSDPGNYTMLS 521 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~l~ 521 (605)
.++...+..++..|...|+.++|.++++.+. +.+|.....|...+
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 2455566666677777777777777777765 34565554444443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=1.4e-06 Score=70.60 Aligned_cols=113 Identities=7% Similarity=-0.169 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLG 488 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~ 488 (605)
+...+..+...+...|++++|...|+.+... .+.+...+..++.++...|++++|...+++. ... .+...+..++.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777778888888888888877762 3445677788888888888888888888876 223 35678888889
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCC-----CCchHHHHHHHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGS-----DPGNYTMLSNIFA 525 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~ 525 (605)
++...|++++|+..++++++..|+ +..+...+..+..
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998877 5555555554443
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=3.1e-07 Score=80.10 Aligned_cols=96 Identities=7% Similarity=-0.088 Sum_probs=81.3
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-N----------------AIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
...+..++..+...|++++|.+.|++. ...| + ...+..+..++...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345666777777888888888888766 2111 1 267888899999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 510 KGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 510 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|.++.++..++.+|...|++++|+..+++..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=2.4e-06 Score=70.09 Aligned_cols=113 Identities=9% Similarity=-0.118 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWG 484 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 484 (605)
+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555555666666666666666666644 2333 456667777777888888888877766 2233 567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.+..++...|++++|...++++++.+|.++.++..+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 888899999999999999999999999988888777766543
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.47 E-value=6.7e-07 Score=71.59 Aligned_cols=92 Identities=16% Similarity=0.067 Sum_probs=69.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchHHHHHHH
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM-PVEPN-A---IIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD---PGNYTMLSNI 523 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~ 523 (605)
..++..+...|++++|.+.|+++ ...|+ . ..+..++.++...|++++|+..++++++..|++ +.++..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677778888888877776 22232 2 466677788888888888888888888888888 6668888888
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 037404 524 FAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...|++++|...++++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888874
No 166
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.44 E-value=1.5e-05 Score=74.44 Aligned_cols=215 Identities=13% Similarity=0.080 Sum_probs=154.6
Q ss_pred CchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhHHHHHHHHHHHc-C-ChHHHHH
Q 037404 325 GLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG-SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMH-G-QGEKALG 398 (605)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~-~-~~~~A~~ 398 (605)
+..++|.+++..+...+.. +..+++.--..+...| .+++++.+++.+. +++..+|+.-...+... + ++++++.
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 3346788888888877633 5667777777777788 5999999999876 45667888777777766 7 8999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhcccCCHH--------HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC-------
Q 037404 399 LFSRMKDEGFGPDKYTFVGVLCACTHAGFID--------KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR------- 463 (605)
Q Consensus 399 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------- 463 (605)
+++++.+.. +-|..+|+.-..++.+.|.++ ++++.++++.+ ..+-|...|+.....+.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccccchHH
Confidence 999999753 336667766555555555555 89999999988 345678888888888888776
Q ss_pred HHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhhc------CCCCc
Q 037404 464 LKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAV--------------------ELAEEVLDCLIRLK------GSDPG 515 (605)
Q Consensus 464 ~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------p~~~~ 515 (605)
++++++.++++ . .+-|...|+.+...+.+.|.. .....+..++.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 78899998877 3 334677787777777666543 33444444443332 45667
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
++..++++|...|+.++|.++++.+.+.
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 8889999999999999999999998753
No 167
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.42 E-value=2.5e-06 Score=85.05 Aligned_cols=145 Identities=10% Similarity=-0.049 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
...|..+...|.+.|++++|+..|++..+. .|+... .. .+... .... .....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~----------~~-~~~~~----~~~~-----~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYG----------LS-EKESK----ASES-----FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS----------CC-HHHHH----HHHH-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hccccc----------CC-hHHHH----HHHH-----HHHHHHHHHHH
Confidence 345666666777777777777777776653 121100 00 00000 0000 12457888899
Q ss_pred HhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHH
Q 037404 457 LLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVA 534 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 534 (605)
+|.+.|++++|+..++++ .+ +.+...+..+..+|...|++++|+..|+++++++|.++.++..++.++.+.|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 33 3457789999999999999999999999999999999999999999999999999876
Q ss_pred -HHHHHHHhC
Q 037404 535 -NVRLQMKKT 543 (605)
Q Consensus 535 -~~~~~~~~~ 543 (605)
..+++|..+
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 455666543
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=7.6e-07 Score=89.12 Aligned_cols=119 Identities=8% Similarity=-0.031 Sum_probs=97.6
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAV 496 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 496 (605)
...+.+.|++++|.+.++++.+. .+.+...+..++.+|.+.|++++|++.++++ ...| +...+..++.++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34567788999999999988872 3445788889999999999999999999887 3344 577889999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHH--HHhcCChHHHHHHHHH
Q 037404 497 ELAEEVLDCLIRLKGSDPGNYTMLSNI--FAATGDWNKVANVRLQ 539 (605)
Q Consensus 497 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 539 (605)
++|++.++++++.+|.++..+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999888 8899999999999983
No 169
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=2.6e-07 Score=72.64 Aligned_cols=83 Identities=13% Similarity=0.091 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 461 SGRLKEALRLVQSM-PV---EPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 461 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
.|++++|+..|++. .. .|+ ...+..++.++...|++++|+..++++++.+|+++.++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666677777665 33 233 44667777777777888888888888888778777777888888888888888888
Q ss_pred HHHHHHhC
Q 037404 536 VRLQMKKT 543 (605)
Q Consensus 536 ~~~~~~~~ 543 (605)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 87777764
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=8.9e-07 Score=70.89 Aligned_cols=94 Identities=7% Similarity=0.015 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------CchHHH
Q 037404 449 EHYGCMIDLLGRSGRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-------PGNYTM 519 (605)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~ 519 (605)
..+..++..+...|++++|...+++. . .+.+...+..++..+...|++++|...++++.+..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34555666666666666666666655 1 22345566666666667777777777777777766554 556667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 037404 520 LSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 520 l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++.++...|++++|.+.++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777666
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=1.2e-06 Score=70.13 Aligned_cols=110 Identities=7% Similarity=-0.040 Sum_probs=71.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CC----CCC----HHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PV----EPN----AIIWG 484 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~ 484 (605)
.+..+...+...|++++|...++.+... .+.+...+..++..+...|++++|...++++ .. .++ ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555666666666666666551 2334555666666666666666666666655 11 122 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHh
Q 037404 485 TLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAA 526 (605)
Q Consensus 485 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 526 (605)
.++.++...|++++|...++++.+..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 788888888999999999999888877 56666666665543
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.37 E-value=8.1e-05 Score=69.24 Aligned_cols=191 Identities=9% Similarity=0.025 Sum_probs=93.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC-hHHHHHHH
Q 037404 327 LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCG--SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ-GEKALGLF 400 (605)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~-~~~A~~~~ 400 (605)
++.+..++..+...+ +.+..+|+.-..++...| .+++++.+++++. +.|..+|+--...+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 445555666555544 235555555555555555 3566666666655 3455566655555556666 46677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhccc--------------CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhc-----
Q 037404 401 SRMKDEGFGPDKYTFVGVLCACTHA--------------GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRS----- 461 (605)
Q Consensus 401 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 461 (605)
+++.+.. .-|...|+.....+... +.++++++.+..... -.+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 7766643 22444444433333222 335566666666655 2333455554443333333
Q ss_pred ------CCHHHHHHHHHhC-CCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 462 ------GRLKEALRLVQSM-PVEPNA-IIWGTLLG---ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 462 ------g~~~~A~~~~~~~-~~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+.++++++.++++ ...||. ..+..++. .....|..++....+.++.+++|....-|..+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 2344555555554 223332 12211111 111234455555555555555555554444443
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=5.5e-06 Score=82.24 Aligned_cols=163 Identities=7% Similarity=-0.089 Sum_probs=113.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCH----HHHHHHHHHhcccCCHHHHHHHHHHhHHhh---CCCC-chHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEG-FGPDK----YTFVGVLCACTHAGFIDKGVQYFYSMERDY---GILP-QVEH 450 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 450 (605)
+..++..|...|++++|.+.+.++...- -.++. ...+.+-..+...|+++.|..+++...... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 5567777888888888888777765421 11122 123333445566788888888887765421 2222 2557
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CC----Cc
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-----P--VEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLKG---SD----PG 515 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~----~~ 515 (605)
+..++..|...|++++|..++++. + ..+. ..++..++..|...|++++|..+++++....+ .+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778899999999999999988766 1 1222 44777888999999999999999999887642 22 13
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 516 NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 516 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 466777888889999999998888865
No 174
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=1.8e-06 Score=72.10 Aligned_cols=128 Identities=10% Similarity=-0.065 Sum_probs=78.9
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc----hHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCC----HHHH
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQ----VEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPN----AIIW 483 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~ 483 (605)
..+...+...|++++|...+++......-.++ ...+..+...+...|++++|.+.+++. +..++ ...+
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 92 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 92 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 33444444445555555544444331100011 134555666666666666666666654 10111 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCC------CCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 484 GTLLGACRKHNAVELAEEVLDCLIRLKGS------DPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 484 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
..+...+...|++++|...++++++..+. .+..+..++.++...|++++|.+.+++..+.
T Consensus 93 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67778888889999999988888876321 2346778889999999999999999888763
No 175
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.36 E-value=5.2e-06 Score=66.26 Aligned_cols=105 Identities=12% Similarity=-0.042 Sum_probs=74.3
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCch---HHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQV---EHYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----AIIWGTLLGA 489 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~ 489 (605)
+...+...|++++|...++.+.+. .+.+. ..+..++.++.+.|++++|...|+++ ...|+ ...+..++.+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 444566677777777777777662 22222 46667777788888888888888776 22233 5567778888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 037404 490 CRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF 524 (605)
Q Consensus 490 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 524 (605)
+...|++++|...++++++..|+++........+-
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 99999999999999999999998876655554443
No 176
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.34 E-value=2.5e-06 Score=67.98 Aligned_cols=94 Identities=12% Similarity=0.037 Sum_probs=51.0
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC----CC----HHHHHHHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE----PN----AIIWGTLL 487 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~----~~~~~~l~ 487 (605)
.+...+.+.|++++|+..|+++++ -.+.+...|..++.+|.+.|++++|++.+++. .+. ++ ..++..++
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 344444445555555555554444 12223444555555555555555555555443 111 11 23556667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 488 GACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
.++...|++++|++.|+++++..|+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777788888888888888776654
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.00011 Score=68.34 Aligned_cols=179 Identities=11% Similarity=0.030 Sum_probs=133.0
Q ss_pred hHHHHHHHhcCC---CCChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC-HHHHHHHH
Q 037404 362 LDNAMSVFNGMT---KKDLVSWNAMLYGLAMHG--QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF-IDKGVQYF 435 (605)
Q Consensus 362 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 435 (605)
+++++.+++.+. +++..+|+.-...+...+ .+++++..++++.+.. +-|...|+.-..++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777665 557788888887888877 4899999999999864 3467777776666777787 68999999
Q ss_pred HHhHHhhCCCCchHHHHHHHHHhhhc--------------CCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhc------
Q 037404 436 YSMERDYGILPQVEHYGCMIDLLGRS--------------GRLKEALRLVQSM-P-VEPNAIIWGTLLGACRKH------ 493 (605)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~------ 493 (605)
..+++ ..+-|...|+.....+.+. +.++++++.+++. . .+-|...|+-+-..+.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 99988 3456777787776666554 4578899998887 2 334566776555555544
Q ss_pred -----CCHHHHHHHHHHHHhhcCCCCchHHHHHHH---HHhcCChHHHHHHHHHHHhC
Q 037404 494 -----NAVELAEEVLDCLIRLKGSDPGNYTMLSNI---FAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 494 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~ 543 (605)
+.++++++.++++++..|++...+..++.. ....|..++....++++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 468999999999999999986554444433 22468888999999999984
No 178
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.32 E-value=3e-06 Score=78.35 Aligned_cols=113 Identities=7% Similarity=-0.180 Sum_probs=91.2
Q ss_pred CHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 037404 411 DKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLG 488 (605)
Q Consensus 411 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 488 (605)
+...+..+...+...|++++|...|+++... .+.+...+..++..|.+.|++++|.+.++++ ...| +...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4566777888899999999999999999872 3447788889999999999999999999887 4445 4668888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 489 ACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 489 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
++...|++++|+..++++++.+|+++..+...++...
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 9999999999999999999998877655444444433
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.31 E-value=1.3e-06 Score=83.10 Aligned_cols=149 Identities=11% Similarity=-0.053 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 377 LVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 377 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
...+..+...+.+.|++++|+..|++.... .|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 345666677777788888888888887763 344331 223334443332221 136788888
Q ss_pred HhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHH-HhcCChHHH
Q 037404 457 LLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIF-AATGDWNKV 533 (605)
Q Consensus 457 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 533 (605)
+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..|+++++++|.++.++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3334 5778888999999999999999999999999999999988888884 455778888
Q ss_pred HHHHHHHHhCCC
Q 037404 534 ANVRLQMKKTRA 545 (605)
Q Consensus 534 ~~~~~~~~~~~~ 545 (605)
...++++.+..+
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 888888877543
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=3.1e-06 Score=66.76 Aligned_cols=97 Identities=7% Similarity=-0.010 Sum_probs=66.6
Q ss_pred HHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 037404 416 VGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH 493 (605)
Q Consensus 416 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 493 (605)
..+...+.+.|++++|...++++.+ ..+.+...+..+..++...|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3444556677777777777777766 23446667777777888888888888888776 3334 466777788888888
Q ss_pred CCHHHHHHHHHHHHhhcCCCC
Q 037404 494 NAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 494 g~~~~A~~~~~~~~~~~p~~~ 514 (605)
|++++|+..++++++.+|.++
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888877654
No 181
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.29 E-value=3.5e-06 Score=65.16 Aligned_cols=99 Identities=14% Similarity=-0.037 Sum_probs=63.7
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP---NAIIWGTLLGA 489 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~ 489 (605)
.+..+...+...|++++|...++++.+. .+.+...+..++..+...|++++|.+.+++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444555556666666666666666552 2334556666666777777777777777665 2223 46677777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhhcCCCC
Q 037404 490 CRKH-NAVELAEEVLDCLIRLKGSDP 514 (605)
Q Consensus 490 ~~~~-g~~~~A~~~~~~~~~~~p~~~ 514 (605)
+... |++++|.+.++++.+..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 788888888888777777654
No 182
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.28 E-value=1.1e-05 Score=76.59 Aligned_cols=131 Identities=6% Similarity=-0.125 Sum_probs=103.9
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHhcccCCHHHHHHHHHHhHHh
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--------------KYTFVGVLCACTHAGFIDKGVQYFYSMERD 441 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 441 (605)
+...|..+...|.+.|++++|+..|++..+...... ...+..+..++.+.|++++|+..++++.+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 345677778888888888888888888887532111 47788888999999999999999999988
Q ss_pred hCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 037404 442 YGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELA-EEVLDCLIR 508 (605)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 508 (605)
-.+.+...+..+..+|...|++++|...|+++ .+.| +...+..+..++...|++++| ...++++..
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24457888999999999999999999999987 3344 567888888999999999988 456666654
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.27 E-value=5e-06 Score=80.06 Aligned_cols=138 Identities=7% Similarity=-0.106 Sum_probs=101.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHH
Q 037404 378 VSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDL 457 (605)
Q Consensus 378 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (605)
..+..+...+.+.|++++|+..|++..+. .+... ..... +.... ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHHH
Confidence 45666667777777777777777776652 01000 00000 11100 111245678889999
Q ss_pred hhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHH
Q 037404 458 LGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVAN 535 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 535 (605)
|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|.++.++..++.++...|+.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 5555 477889999999999999999999999999999999999999999999988887765
Q ss_pred H
Q 037404 536 V 536 (605)
Q Consensus 536 ~ 536 (605)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.27 E-value=2.6e-06 Score=71.34 Aligned_cols=79 Identities=19% Similarity=0.056 Sum_probs=65.1
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-chHHHHHHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDP-GNYTMLSNI 523 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~ 523 (605)
+...|..+..+|.+.|++++|+..++++ .+.| +...|..++.++...|++++|...++++++++|.++ .+...+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3567888899999999999999999887 3334 577899999999999999999999999999999988 555555555
Q ss_pred HH
Q 037404 524 FA 525 (605)
Q Consensus 524 ~~ 525 (605)
..
T Consensus 142 ~~ 143 (162)
T 3rkv_A 142 TE 143 (162)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.26 E-value=9.9e-06 Score=81.01 Aligned_cols=115 Identities=9% Similarity=0.017 Sum_probs=53.0
Q ss_pred HHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKG 431 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 431 (605)
.+.+.|++++|.+.|++.. +.+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445555555555555443 2234455555555555555555555555555532 12334455555555555555555
Q ss_pred HHHHHHhHHhhCCCCchHHHHHHHHH--hhhcCCHHHHHHHHH
Q 037404 432 VQYFYSMERDYGILPQVEHYGCMIDL--LGRSGRLKEALRLVQ 472 (605)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 472 (605)
.+.++++.+. .+.+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555442 11122233333333 444555555555554
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.26 E-value=1.1e-06 Score=68.92 Aligned_cols=93 Identities=15% Similarity=0.064 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037404 425 AGFIDKGVQYFYSMERDYG--ILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 425 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
.|++++|+..|+++.+ .+ .+.+...+..++..|...|++++|.+.|+++ ...| +...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 5677778888877765 12 1334567788888888899999999988887 3333 4678888899999999999999
Q ss_pred HHHHHHHhhcCCCCchHH
Q 037404 501 EVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~ 518 (605)
..++++++..|.++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876543
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.22 E-value=6e-05 Score=76.80 Aligned_cols=169 Identities=8% Similarity=-0.010 Sum_probs=133.0
Q ss_pred ChHHHHHHHhcCC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC-
Q 037404 361 SLDNAMSVFNGMT---KKDLVSWNAMLYGLAMHGQ----------GEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG- 426 (605)
Q Consensus 361 ~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 426 (605)
..++|++.++++. +.+..+|+.-...+...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3456677777665 3355667666666666666 899999999998853 335677877777778888
Q ss_pred -CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---------
Q 037404 427 -FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG-RLKEALRLVQSM-PVEP-NAIIWGTLLGACRKH--------- 493 (605)
Q Consensus 427 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------- 493 (605)
+++++.+.++++.+ ..+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~--~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh--hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 67999999999988 34557888888888888888 899999999988 4444 567888777776653
Q ss_pred -----CCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHH
Q 037404 494 -----NAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 494 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
+.++++.+++.+++..+|.+..+|..+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999999998665
No 188
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.20 E-value=8.5e-06 Score=61.60 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
.+...+..++.++...|++++|+..++++++.+|.++.+|..++.+|...|++++|++.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 357788899999999999999999999999999999999999999999999999999999999874
No 189
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=6.3e-07 Score=69.50 Aligned_cols=93 Identities=15% Similarity=0.008 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CchHH
Q 037404 447 QVEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD------PGNYT 518 (605)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 518 (605)
+...+..++..+...|++++|.+.|++. .. +.+...+..+..++...|++++|+..++++++.+|++ +..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4566778888889999999999999887 32 3457788889999999999999999999999999998 77788
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 037404 519 MLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 519 ~l~~~~~~~g~~~~A~~~~~~ 539 (605)
.++.++...|++++|++.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888887777665543
No 190
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=3.4e-05 Score=76.44 Aligned_cols=160 Identities=9% Similarity=-0.035 Sum_probs=119.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCc
Q 037404 384 LYGLAMHGQGEKALGLFSRMKDEGFGPD----------------KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQ 447 (605)
Q Consensus 384 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 447 (605)
...+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3445677888888888888776432111 124677889999999999999999988764333333
Q ss_pred h----HHHHHHHHHhhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----
Q 037404 448 V----EHYGCMIDLLGRSGRLKEALRLVQSM-------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRLK----- 510 (605)
Q Consensus 448 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 510 (605)
. .+.+.+...+...|++++|.+++++. +..+. ..++..++..+...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 23445556667789999999988765 22333 4577889999999999999999999988752
Q ss_pred -CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 511 -GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 511 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+....++..++.+|...|++++|..++++....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 222357888999999999999999999998763
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.17 E-value=7.6e-06 Score=81.23 Aligned_cols=123 Identities=9% Similarity=0.006 Sum_probs=95.6
Q ss_pred hcccCCHHHHHHHHHHhHHhhC--CCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHH
Q 037404 422 CTHAGFIDKGVQYFYSMERDYG--ILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGT 485 (605)
Q Consensus 422 ~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ 485 (605)
+...|++++|+.++++..+... +.| ...+++.|+..|...|++++|+.++++. +..|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888888877765321 112 2457888888999999999998888765 23344 447899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCch---HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRL-----KGSDPGN---YTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
|+..|...|++++|+.++++++++ .|++|.+ ...+..++..+|++++|..++.++.+.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 5777654 5578888899999999999999998743
No 192
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.17 E-value=1.1e-05 Score=67.09 Aligned_cols=133 Identities=8% Similarity=-0.038 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCC----chH
Q 037404 379 SWNAMLYGLAMHGQGEKALGLFSRMKDEGFG-PD----KYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILP----QVE 449 (605)
Q Consensus 379 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 449 (605)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++......-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555666666666666666665542100 11 13455666677777777777777777654211111 134
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-------PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.+..+...+...|++++|.+.+++. +..+ ....+..+...+...|++++|...++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5667777888888888888887765 1111 134667778888899999999999999887643
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.15 E-value=1.2e-05 Score=77.37 Aligned_cols=112 Identities=4% Similarity=-0.055 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 037404 413 YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEP-NAIIWGTLLGACR 491 (605)
Q Consensus 413 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~ 491 (605)
..+..+...+.+.|++++|+..|+++.+.. +.. ......+++. ...| +...|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 345556666667777777777776665510 000 0000111110 1223 3568888999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+.|++++|+..++++++.+|.++.++..++.+|...|++++|++.++++.+.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999984
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.15 E-value=7e-06 Score=66.66 Aligned_cols=74 Identities=11% Similarity=0.056 Sum_probs=59.1
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CC-------CCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PV-------EPNA-IIW----GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGN 516 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-------~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 516 (605)
.|..+..++.+.|++++|+..+++. .+ .|+. ..| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 6777777777777777777777665 34 7764 478 889999999999999999999999999998876
Q ss_pred HHHHHHH
Q 037404 517 YTMLSNI 523 (605)
Q Consensus 517 ~~~l~~~ 523 (605)
+..+..+
T Consensus 139 ~~~~~~~ 145 (159)
T 2hr2_A 139 TPGKERM 145 (159)
T ss_dssp CTTHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=1e-05 Score=80.59 Aligned_cols=95 Identities=8% Similarity=-0.054 Sum_probs=76.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSM-PVEPN----------------AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
.+..+...|.+.|++++|...|+++ ...|+ ...|..+..++.+.|++++|+..++++++++|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4445555555556666666555554 11111 568888999999999999999999999999999
Q ss_pred CCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 513 DPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 513 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++.+|..++.+|...|++++|+..|+++.+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999864
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=9.2e-06 Score=63.31 Aligned_cols=78 Identities=13% Similarity=0.101 Sum_probs=66.0
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 466 EALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 466 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+|++.|++. ...| +...+..++..+...|++++|+..++++++.+|.++..+..++.+|...|++++|+..+++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355566555 3333 56788888999999999999999999999999999999999999999999999999999998874
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.09 E-value=1.8e-05 Score=58.40 Aligned_cols=81 Identities=21% Similarity=0.193 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 037404 448 VEHYGCMIDLLGRSGRLKEALRLVQSM-PV-EPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFA 525 (605)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 525 (605)
...+..+...+...|++++|.+.+++. .. +.+...+..+..++...|++++|...++++++.+|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777788888888888888776 22 2356677788888888888999999998888888888888888888876
Q ss_pred hcC
Q 037404 526 ATG 528 (605)
Q Consensus 526 ~~g 528 (605)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.08 E-value=1e-05 Score=76.95 Aligned_cols=153 Identities=8% Similarity=-0.025 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccc
Q 037404 346 TNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHA 425 (605)
Q Consensus 346 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 425 (605)
...+..+...+.+.|++++|...|++....++... .+...++.+++...+. ...|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788889999999999999997653222111 1222333444333221 13677788889999
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVEPNA-IIWGTLLGA-CRKHNAVELAEEV 502 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~A~~~ 502 (605)
|++++|+..++++.+ ..+.+...+..+..+|...|++++|.+.|+++ .+.|+. ..+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 23456788999999999999999999999998 555653 355555544 2345678888999
Q ss_pred HHHHHhhcCCCCc
Q 037404 503 LDCLIRLKGSDPG 515 (605)
Q Consensus 503 ~~~~~~~~p~~~~ 515 (605)
|.+++...|.++.
T Consensus 322 ~~~~l~~~p~~~~ 334 (338)
T 2if4_A 322 YKGIFKGKDEGGA 334 (338)
T ss_dssp -------------
T ss_pred HHHhhCCCCCCCC
Confidence 9999998887653
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.03 E-value=7.2e-05 Score=55.13 Aligned_cols=69 Identities=6% Similarity=0.042 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 477 EPNAIIWGTLLGACRKHNA---VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
++|+..+..+..++...++ .++|..+++++++.+|+++..+..++..+.+.|++++|+..++++.+..+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4567788888888865554 79999999999999999999999999999999999999999999998654
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.00 E-value=4.6e-06 Score=67.55 Aligned_cols=85 Identities=7% Similarity=0.006 Sum_probs=63.6
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc
Q 037404 460 RSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNA----------VELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT 527 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 527 (605)
+.+.+++|.+.+++. ... .+...|..+..++...++ +++|+..|+++++++|+++.+|+.++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344455666666555 222 245555556555555544 57999999999999999999999999999887
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 037404 528 G-----------DWNKVANVRLQMKKTR 544 (605)
Q Consensus 528 g-----------~~~~A~~~~~~~~~~~ 544 (605)
| ++++|++.|+++.+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999999854
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=4.1e-05 Score=58.92 Aligned_cols=67 Identities=13% Similarity=0.059 Sum_probs=62.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 478 PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
++...+..++..+...|++++|+..++++++..|.++.++..++.++...|++++|++.++++.+..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3566788899999999999999999999999999999999999999999999999999999999854
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.89 E-value=0.00017 Score=58.09 Aligned_cols=110 Identities=8% Similarity=-0.051 Sum_probs=70.7
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEV 502 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 502 (605)
++++|..+|++..+ .+ .|+. . +...|...+.+++|.+.|++.-...+......+...|.. .+++++|...
T Consensus 10 d~~~A~~~~~~aa~-~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACE-LN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHH-TT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHc-CC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 45566666666655 23 2222 2 555566666666666666665222456666666666666 6777777777
Q ss_pred HHHHHhhcCCCCchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 037404 503 LDCLIRLKGSDPGNYTMLSNIFAA----TGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 503 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 544 (605)
++++.+. .++..+..|+.+|.. .++.++|.+++++..+.|
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777764 456677777877777 777888888888777765
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.87 E-value=0.00017 Score=73.48 Aligned_cols=152 Identities=16% Similarity=0.045 Sum_probs=125.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCC----------HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhh
Q 037404 391 GQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGF----------IDKGVQYFYSMERDYGILPQVEHYGCMIDLLG 459 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (605)
...++|++.++++... .|+. ..|+.--.++...|+ ++++.+.++.+.+ ..+.+..+|..-...+.
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 3456889999999985 5654 456655555666666 8999999999988 45667888998888899
Q ss_pred hcC--CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhc-------
Q 037404 460 RSG--RLKEALRLVQSM-P-VEPNAIIWGTLLGACRKHN-AVELAEEVLDCLIRLKGSDPGNYTMLSNIFAAT------- 527 (605)
Q Consensus 460 ~~g--~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 527 (605)
+.| +++++++.++++ . .+-+...|+.-..++.+.| .++++.++++++++.+|.+..+|...+.++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 999 779999999998 3 3456889998888888999 899999999999999999999999999998874
Q ss_pred -------CChHHHHHHHHHHHhCCCC
Q 037404 528 -------GDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 528 -------g~~~~A~~~~~~~~~~~~~ 546 (605)
++++++++.+++++...+.
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC
Confidence 5679999999999886544
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.86 E-value=2.1e-05 Score=78.02 Aligned_cols=115 Identities=10% Similarity=0.005 Sum_probs=88.2
Q ss_pred HHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCc---hH
Q 037404 456 DLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPG---NY 517 (605)
Q Consensus 456 ~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~ 517 (605)
..+..+|++++|+.++++. +..|+ ..+++.|+.+|...|++++|+.++++++++ .|++|. .+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3466889999999988765 12343 458899999999999999999999999885 456654 57
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhh
Q 037404 518 TMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588 (605)
Q Consensus 518 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (605)
..|+.+|..+|++++|+.+++++.+..... -...||...++..++.....++.
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~------------------lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVT------------------HGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------------------hCCCChHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999998732100 01358888888877776664443
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.83 E-value=4.2e-05 Score=72.57 Aligned_cols=235 Identities=13% Similarity=0.102 Sum_probs=142.9
Q ss_pred CCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhc
Q 037404 48 DPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNG 127 (605)
Q Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 127 (605)
.+.+|..|..++...+++.+|++.|= ...|+..|..+|.+..+.|.+++-+..+...++..- ++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHh
Confidence 45667777777777777777776553 344556677777777777877777777665554422 33444567777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCC------------------------CCe
Q 037404 128 KNWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGE------------------------RDI 183 (605)
Q Consensus 128 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~------------------------~~~ 183 (605)
.+++.+.++++ -.|+..-.....+-|...| .++.|.-+|..+.. .++
T Consensus 129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~--lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEK--MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSC--CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hCcHHHHHHHH-------cCCCcccHHHHHHHHHHcc--CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 77666544443 2455555666666666667 66666666655532 345
Q ss_pred ehHHHHHHHHHhCCChhHHHHHHhhc-CCCCcchHHHHHHHHHcCCChHHHHHHHHhCC---CCChhHHHHHHHHHHhcC
Q 037404 184 VSWNSMIAGLVKGGELSEARRLFDEM-PERDAVSWNTILDGYAKAGEMNLAFELFEKIP---HRNIVSWSTMVWGYSKDG 259 (605)
Q Consensus 184 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~ 259 (605)
.+|-.+-.+|...+.+.-|...--.+ +.+|. ...++..|-..|.+++-+.+++... +...-.++-|.-.|++-
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIvhade--L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-
Confidence 56666666666666665543322222 22221 1223444556677777777776654 24556777887777775
Q ss_pred CHHHHHHHHhhCCC----C-------CcccHHHHHHHHHhCCChHHHHHH
Q 037404 260 DMEMAKLLFDRMPA----K-------TLVPWTIIISGYAEKGMAKEAARL 298 (605)
Q Consensus 260 ~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~a~~~ 298 (605)
++++..+.++..-. + ....|..++-.|.+..+++.|...
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH
Confidence 45555555554322 1 222388888888888888877644
No 206
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.82 E-value=0.00013 Score=58.42 Aligned_cols=91 Identities=11% Similarity=0.029 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhc-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCce
Q 037404 477 EPNAIIWGTLLGACRKHN---AVELAEEVLDCLIRLK-G-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGA 551 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 551 (605)
.++..+...+.+++++++ +.++++.+++++.+.+ | .+.+.++.|+-.+.+.|++++|+++++.+.+.
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i-------- 100 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT-------- 100 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------
Confidence 467777777888888877 6668888888888877 6 45778888888888888888888888888872
Q ss_pred eEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 552 SSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
+|+..+...+.+.+.+.+++.|.+
T Consensus 101 ------------------eP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 101 ------------------EPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHHhhHH
Confidence 556666777777777777777665
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.77 E-value=9.8e-05 Score=54.26 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...+..+...+...|++++|+..++++++..|.++..+..++.++...|++++|+..+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35577888899999999999999999999999999999999999999999999999999999885
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.74 E-value=0.00014 Score=71.16 Aligned_cols=116 Identities=12% Similarity=0.111 Sum_probs=89.2
Q ss_pred HHHhhhcCCHHHHHHHHHhC-C-----CC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCc---h
Q 037404 455 IDLLGRSGRLKEALRLVQSM-P-----VE---PN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPG---N 516 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~-----~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~ 516 (605)
+..+.+.|++++|++++++. . .. |+ ..+++.++.+|...|++++|+.+++++++. .|++|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999988765 1 12 22 457888999999999999999999999875 355554 5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhh
Q 037404 517 YTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLK 588 (605)
Q Consensus 517 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 588 (605)
+..|+.+|..+|++++|+.+++++.+-... .-...||...++...+.....+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 888999999999999999999999873110 002368899998888888877765
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.73 E-value=0.00016 Score=56.11 Aligned_cols=82 Identities=9% Similarity=-0.005 Sum_probs=60.2
Q ss_pred HHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037404 430 KGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLI 507 (605)
Q Consensus 430 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 507 (605)
.|+..++++.+ ..+.+...+..++..|...|++++|.+.|++. ... .+...+..+..++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666655 23445677777888888888888888888776 223 346678888888888899999999999988
Q ss_pred hhcCCC
Q 037404 508 RLKGSD 513 (605)
Q Consensus 508 ~~~p~~ 513 (605)
+..|.+
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887643
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.71 E-value=2.8e-05 Score=62.99 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCC----------HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 037404 426 GFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGR----------LKEALRLVQSM-PVEPN-AIIWGTLLGACRKH 493 (605)
Q Consensus 426 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 493 (605)
+.+++|.+.++...+ --+.+...|..+..++...++ +++|+..|++. .+.|+ ...|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 345555555555554 123345555555555555544 34777777666 44443 55677777777665
Q ss_pred -----------CCHHHHHHHHHHHHhhcCCCCc
Q 037404 494 -----------NAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 494 -----------g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
|++++|+..|+++++++|++..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~ 126 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH 126 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence 5899999999999999999753
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.65 E-value=0.00075 Score=54.23 Aligned_cols=111 Identities=11% Similarity=-0.090 Sum_probs=91.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhh----cCCHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGR----SGRLKE 466 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 466 (605)
+++++|+.+|++..+.| .|+.. +...|...+..++|.++|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 56889999999999887 44444 667788888899999999999872 466778888888888 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhc
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRK----HNAVELAEEVLDCLIRLK 510 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 510 (605)
|.++|++.-..-++.....|...|.. .+++++|...++++.+..
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988333577888889999988 899999999999998863
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.58 E-value=8.1e-05 Score=55.89 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHHHhhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCCh
Q 037404 454 MIDLLGRSGRLKEALRLVQSM-PVEP-NAI-IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDW 530 (605)
Q Consensus 454 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 530 (605)
.+..+.+.|++++|.+.++++ ...| +.. .+..++.++...|++++|+..++++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888877 3333 456 78888888889999999999999999999988876633 455
Q ss_pred HHHHHHHHHHHh
Q 037404 531 NKVANVRLQMKK 542 (605)
Q Consensus 531 ~~A~~~~~~~~~ 542 (605)
.++...+++...
T Consensus 78 ~~a~~~~~~~~~ 89 (99)
T 2kc7_A 78 MDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHCCTTH
T ss_pred HHHHHHHHHHhc
Confidence 566666655544
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.58 E-value=0.0001 Score=71.88 Aligned_cols=83 Identities=10% Similarity=-0.010 Sum_probs=64.8
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCc---hHHHHH
Q 037404 460 RSGRLKEALRLVQSM---------PVEPN-AIIWGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPG---NYTMLS 521 (605)
Q Consensus 460 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~---~~~~l~ 521 (605)
..|++++|+.++++. +..|+ ..+++.++.+|...|++++|+.++++++++ .|++|. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777654 12233 357888999999999999999999999875 355554 578899
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 037404 522 NIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~~~~ 542 (605)
.+|..+|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999999987
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.52 E-value=0.00027 Score=52.96 Aligned_cols=59 Identities=17% Similarity=0.296 Sum_probs=55.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPG-NYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+..+...|++++|+..++++++.+|.++. .+..++.+|...|++++|++.++++.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456788899999999999999999999999 99999999999999999999999999854
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.39 E-value=0.0041 Score=58.08 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHH--HcC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 037404 374 KKDLVSWNAMLYGLA--MHG---QGEKALGLFSRMKDEGFGPDK-YTFVGVLCAC 422 (605)
Q Consensus 374 ~~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~ 422 (605)
+.+...|...+++.. ..+ +..+|..+|++..+. .|+. ..+..+..+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 446667766665532 223 347788888888874 5653 4444444333
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00087 Score=65.33 Aligned_cols=94 Identities=13% Similarity=-0.012 Sum_probs=67.9
Q ss_pred ccCCHHHHHHHHHHhHHhh--CCCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 037404 424 HAGFIDKGVQYFYSMERDY--GILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AIIWGTLL 487 (605)
Q Consensus 424 ~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~ 487 (605)
..|++++|..++++..+.. -+.| ...+++.|+.+|...|++++|+.+++++ +..|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3467777777777665421 1122 2456778888888888888888888765 23454 34788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhh-----cCCCCchH
Q 037404 488 GACRKHNAVELAEEVLDCLIRL-----KGSDPGNY 517 (605)
Q Consensus 488 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~ 517 (605)
..|...|++++|+.++++++++ .|++|.+-
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 9999999999999999999885 47776543
No 217
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.22 E-value=0.0014 Score=49.13 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=36.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 376 DLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 376 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
++..|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34455555666666666666666666665542 12334555555666666666666666665544
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.20 E-value=0.0029 Score=61.76 Aligned_cols=101 Identities=11% Similarity=-0.011 Sum_probs=73.2
Q ss_pred HHHhcccCCHHHHHHHHHHhHHhh--CCCC----chHHHHHHHHHhhhcCCHHHHHHHHHhC---------CCCCC-HHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMERDY--GILP----QVEHYGCMIDLLGRSGRLKEALRLVQSM---------PVEPN-AII 482 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 482 (605)
+..+.+.|++++|+..+++..... -+.| ...+++.++..|...|++++|+.+++++ +..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556678888888887776421 1222 2457788888888889999888888766 23344 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCchHHH
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRL-----KGSDPGNYTM 519 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 519 (605)
++.|+..|...|++++|+.++++++++ .|++|.+-..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 889999999999999999999999985 5777755443
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.05 E-value=0.0002 Score=68.08 Aligned_cols=367 Identities=11% Similarity=0.069 Sum_probs=178.8
Q ss_pred cchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCC--CCcchHHHHHHHHHcC
Q 037404 150 IFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPE--RDAVSWNTILDGYAKA 227 (605)
Q Consensus 150 ~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~ 227 (605)
+.+|+.|..+....+ .+.+|.+-|- +..|+..|..+|....+.|.+++-+..+....+ .++..=+.++-+|++.
T Consensus 54 p~VWs~LgkAqL~~~--~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKG--MVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSS--SCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccC--chHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhh
Confidence 344555555555544 4444433221 123444455555555555555555555544422 1222334455555555
Q ss_pred CChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC------------------------CCCcccHHHHH
Q 037404 228 GEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMP------------------------AKTLVPWTIII 283 (605)
Q Consensus 228 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------------~~~~~~~~~l~ 283 (605)
+++.+-.+++ ..||..-...+.+-|...|.++.|.-+|..+. ..++.+|-.+-
T Consensus 130 ~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 130 NRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp CSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred CcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 5544322221 12333334444444445555554444444332 23556688877
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Q 037404 284 SGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLD 363 (605)
Q Consensus 284 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 363 (605)
.+|...+.+.-|.-.--.+.- .||. +..++..|...|.+++.+.+++.-.... .....+|+-|.-.|++- +++
T Consensus 207 ~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~Pe 279 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQ 279 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTT
T ss_pred HHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHH
Confidence 888887777766555444432 2221 2234556667777777777766655321 33566677777766653 455
Q ss_pred HHHHHHhcCCC----C-------ChhHHHHHHHHHHHcCChHHHHHH-------------HHHHHHCCCCCCHHHHH---
Q 037404 364 NAMSVFNGMTK----K-------DLVSWNAMLYGLAMHGQGEKALGL-------------FSRMKDEGFGPDKYTFV--- 416 (605)
Q Consensus 364 ~A~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~A~~~-------------~~~m~~~g~~p~~~~~~--- 416 (605)
+..+.++.... | ....|.-++-.|....++|.|... |++...+ -.|...|.
T Consensus 280 KlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi 357 (624)
T 3lvg_A 280 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAI 357 (624)
T ss_dssp HHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHH
Confidence 55555543331 1 345677777777777777766532 1111110 12223332
Q ss_pred ------------HHHHHhcccCCHHHHHHHHHHhHHhh---------CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 417 ------------GVLCACTHAGFIDKGVQYFYSMERDY---------GILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 417 ------------~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
-|+.++...=+..++.+++++.-.-. .-..+..+-.++-+.|....+++.-...++.-.
T Consensus 358 ~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~yd 437 (624)
T 3lvg_A 358 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYD 437 (624)
T ss_dssp HHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCC
T ss_pred HHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Confidence 23333333333444444444331100 011233444566666777777665544443331
Q ss_pred ------------CCCCHHHHHHHHHHHHhcCCHHHHHHHH------HHHHhh--cCCCCchHHHHHHHHHhcCChHH
Q 037404 476 ------------VEPNAIIWGTLLGACRKHNAVELAEEVL------DCLIRL--KGSDPGNYTMLSNIFAATGDWNK 532 (605)
Q Consensus 476 ------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~ 532 (605)
..+-...-..-...|.+.+++++++.+. +.+.+. ...++..-..|+..+...|+.+-
T Consensus 438 NFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~~~elaeeLL~yFv~~g~~Ec 514 (624)
T 3lvg_A 438 NFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFLQEEKREC 514 (624)
T ss_dssp CSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCCCTTHHHHHHHHHHHHCSTHH
T ss_pred cccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHH
Confidence 1111222233345566777787776553 333332 23455555666666666666554
No 220
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.04 E-value=0.0024 Score=57.04 Aligned_cols=86 Identities=10% Similarity=0.192 Sum_probs=71.6
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhcCCC-CchHHHHHHHHHhc-CChHH
Q 037404 464 LKEALRLVQSM-PVEPN---AIIWGTLLGACRK-----HNAVELAEEVLDCLIRLKGSD-PGNYTMLSNIFAAT-GDWNK 532 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 532 (605)
..+|...+++. .+.|+ ...|..++..|.. -|+.++|++.|+++++++|+. ..++..+++.++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 55666777766 55676 5578888888888 499999999999999999975 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCCCCC
Q 037404 533 VANVRLQMKKTRAQKPS 549 (605)
Q Consensus 533 A~~~~~~~~~~~~~~~~ 549 (605)
|..++++.....++..|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999997765434
No 221
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.03 E-value=0.018 Score=44.95 Aligned_cols=91 Identities=8% Similarity=-0.023 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCC-CCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcee
Q 037404 477 EPNAIIWGTLLGACRKHNA---VELAEEVLDCLIRLKGS-DPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 552 (605)
.|+..+--.+.+++.++.+ ..+++.+++.+.+..|. ....++.|+-.+.+.|+|++|+++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 5777777778888888764 55788899998887774 5677888999999999999999999999983
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
.|+..+...+-+.++..+.+.|.+
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchh
Confidence 567777777777788888888765
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.00 E-value=0.0035 Score=48.11 Aligned_cols=65 Identities=6% Similarity=-0.140 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhc-C-CCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 478 PNAIIWGTLLGACRKHNAVEL---AEEVLDCLIRLK-G-SDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 478 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++..+--.+.+++.+++.... ++.+++...+.. | .....++.|+-.+.+.|+|++|+++++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555555666665554443 566666655544 3 3345566666666666666666666666665
No 223
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.95 E-value=0.046 Score=41.89 Aligned_cols=141 Identities=10% Similarity=0.064 Sum_probs=102.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 387 LAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 387 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
+...|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+ ..| ...+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk----iFD----------is~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS----YFD----------LDKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG----GSC----------GGGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh----hcC----------cHhhhcHHH
Confidence 44567888888888887763 3455566666555555555555556655533 222 235677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQ 546 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 546 (605)
....+-.++ .+....+..+......|+-++-.+++..++...+.+|..+..++.+|.+.|+..+|.+++.++=+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777777765 345556677888899999999999999877777888999999999999999999999999999988863
No 224
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.0062 Score=56.86 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=92.3
Q ss_pred CCCHHHHHHHHHHh--cccC---CHHHHHHHHHHhHHhhCCCCc-hHHHHHHHHHhhh---cC-C-------HHHHHHHH
Q 037404 409 GPDKYTFVGVLCAC--THAG---FIDKGVQYFYSMERDYGILPQ-VEHYGCMIDLLGR---SG-R-------LKEALRLV 471 (605)
Q Consensus 409 ~p~~~~~~~ll~~~--~~~g---~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g-~-------~~~A~~~~ 471 (605)
+.+...|...+++. ...+ ...+|..+|+++++ ..|+ ...+..+..+|.. .+ . ...+.+..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 45666677666553 3333 45789999999987 2454 4455544444421 11 1 11222222
Q ss_pred HhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 472 QSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 472 ~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..+ ..+.++.++..+...+...|++++|...+++++.++|. ...|..++.++.-.|++++|.+.++++....+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 233 23456788888887777789999999999999999864 56778999999999999999999999998654
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.85 E-value=0.0051 Score=49.16 Aligned_cols=91 Identities=13% Similarity=-0.038 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHH
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSG---RLKEALRLVQSM-PVE-P--NAIIWGTLLGACRKHNAVELA 499 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A 499 (605)
....+.+.|.+... .-+++..+.-.+..++++.+ +.+++..++++. ... | +...+..+.-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~--~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHc--cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34455566665554 23366777777777888877 566888888776 223 4 345677788889999999999
Q ss_pred HHHHHHHHhhcCCCCchHHH
Q 037404 500 EEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 500 ~~~~~~~~~~~p~~~~~~~~ 519 (605)
+++++.+++.+|++..+...
T Consensus 91 ~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHH
Confidence 99999999999988765443
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.79 E-value=0.0097 Score=44.77 Aligned_cols=71 Identities=8% Similarity=-0.063 Sum_probs=50.2
Q ss_pred HHHHHHHhhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHH
Q 037404 451 YGCMIDLLGRSGRLKEALRLVQSM-----P----VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLS 521 (605)
Q Consensus 451 ~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 521 (605)
+-.++..+.+.|+++.|...|+.+ + -.+...++..+..++.+.|+++.|...++++++..|+++.+...+.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344555555555555555555543 0 1234667888899999999999999999999999999887765554
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.78 E-value=0.57 Score=47.66 Aligned_cols=114 Identities=10% Similarity=-0.016 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH
Q 037404 391 GQGEKALGLFSRMKDEGFGPDKYT----FVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE 466 (605)
Q Consensus 391 ~~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (605)
.+.+.|...|......+ ..+... ...+.......+...++...+..... ..++.......+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888776543 223322 22333344455535566666665433 12333334444444557788888
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037404 467 ALRLVQSMPVEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 467 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
|.+.|+.|+..+ ...-.--+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884332 233333456677778888888888888765
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.70 E-value=0.11 Score=55.76 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=81.4
Q ss_pred HHHhCCChhHHHH-HHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 037404 192 GLVKGGELSEARR-LFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 192 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
.....+++++|.+ ++..+. +......++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.
T Consensus 608 ~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~ 677 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTD 677 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHh
Confidence 3445667777666 442222 011225555666666777766655421 1 1112344567777777777666
Q ss_pred CCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHH
Q 037404 271 MPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCN 350 (605)
Q Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (605)
+. +...|..+...+.+.++++.|...|.++.. +..+...+...|+.+...++-+.....|. ++
T Consensus 678 ~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~ 740 (814)
T 3mkq_A 678 ES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FN 740 (814)
T ss_dssp CC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HH
T ss_pred hC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hH
Confidence 53 334577777777777777777777776532 22333334445555554444444443331 23
Q ss_pred HHHHHHHhcCChHHHHHHHh
Q 037404 351 ALVDMYAKCGSLDNAMSVFN 370 (605)
Q Consensus 351 ~l~~~~~~~g~~~~A~~~~~ 370 (605)
....+|.+.|++++|.+++.
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH
Confidence 33344555666666655443
No 229
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.62 E-value=0.082 Score=56.82 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=30.7
Q ss_pred HHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 037404 356 YAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMK 404 (605)
Q Consensus 356 ~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 404 (605)
....|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 445667777776665542 44667777777777777777777776654
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.57 E-value=0.0089 Score=44.96 Aligned_cols=65 Identities=14% Similarity=-0.028 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-------CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037404 479 NAIIWGTLLGACRKHNAVELAEEVLDCLIRLK-------GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKT 543 (605)
Q Consensus 479 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 543 (605)
+...+..++..+.+.|+++.|...++++++.. +..+.++..|+.++.+.|++++|..+++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45666788999999999999999999999863 234567999999999999999999999999974
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.51 E-value=0.02 Score=41.79 Aligned_cols=71 Identities=11% Similarity=0.027 Sum_probs=55.2
Q ss_pred CCchHHHHHHHHHhhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc
Q 037404 445 LPQVEHYGCMIDLLGRSGR---LKEALRLVQSM-PVEP-NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG 515 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 515 (605)
+.++..+..+..++...++ .++|..++++. ...| +...+..++..+.+.|++++|+..|+++++.+|.++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 4567777777777765544 68999999887 3344 4667778888899999999999999999998888443
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.43 E-value=0.017 Score=44.44 Aligned_cols=89 Identities=7% Similarity=-0.023 Sum_probs=68.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcC-CCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCCcee
Q 037404 477 EPNAIIWGTLLGACRKHNA---VELAEEVLDCLIRLKG-SDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRAQKPSGAS 552 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 552 (605)
.|+..+--.+.+++.++.+ ..+++.+++.+.+..| .....++.|+-.+.+.|++++|+++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--------- 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---------
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---------
Confidence 4677777778888887764 4578888888888777 34677888999999999999999999988873
Q ss_pred EEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcC
Q 037404 553 SVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVG 591 (605)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g 591 (605)
.|+..+...+-..+++.+.+.|
T Consensus 108 -----------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 -----------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 5666677777767777666554
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.33 E-value=0.03 Score=44.01 Aligned_cols=54 Identities=7% Similarity=-0.093 Sum_probs=43.3
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 492 KHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 492 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
..++.++|+++|+.+++....-+.+|...+..-.++|+...|++++.+.+..+.
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 337888999999998887444466777788888899999999999999998654
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.11 Score=42.67 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=56.5
Q ss_pred HHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHH
Q 037404 355 MYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 355 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 434 (605)
.....|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-..+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345566666666666554 3455666677766677777766666665442 23333344555555554444
Q ss_pred HHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 435 FYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
-+....+ | -++.....+.-.|+++++.+++.+.+
T Consensus 83 a~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 83 QNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 3333221 1 13334444556666777666666654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.70 E-value=0.12 Score=39.61 Aligned_cols=90 Identities=13% Similarity=-0.014 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 037404 428 IDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKE---ALRLVQSM-PVE-P--NAIIWGTLLGACRKHNAVELAE 500 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 500 (605)
...+.+.|...... +. ++..+--.+..++.+..+... ++.++++. ... | .....-.+.-++.+.|++++|+
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555441 33 566666667777777776555 77777766 222 3 2335566778899999999999
Q ss_pred HHHHHHHhhcCCCCchHHH
Q 037404 501 EVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 501 ~~~~~~~~~~p~~~~~~~~ 519 (605)
++++.+++..|.+..+...
T Consensus 95 ~~~~~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 9999999999998766544
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.60 E-value=0.024 Score=50.65 Aligned_cols=105 Identities=11% Similarity=0.097 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhHHhhCCCCc---hHHHHHHHHHhhh-----cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhc-CC
Q 037404 428 IDKGVQYFYSMERDYGILPQ---VEHYGCMIDLLGR-----SGRLKEALRLVQSM-PVEPN--AIIWGTLLGACRKH-NA 495 (605)
Q Consensus 428 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~-g~ 495 (605)
...|...++++.+ +.|+ ...|..++..|.+ -|+.++|.++|++. .+.|+ ..++......++.. |+
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 3445555555544 2343 4456666666666 37777777777776 44452 45555566666663 77
Q ss_pred HHHHHHHHHHHHhhcCCC-CchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 496 VELAEEVLDCLIRLKGSD-PGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
.++|.+.+++++...|.. |. +.+...+.-++|..+++++.
T Consensus 256 ~~~a~~~L~kAL~a~p~~~P~------~~lan~~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 RAGFDEALDRALAIDPESVPH------NKLLVILSQKRARWLKAHVQ 296 (301)
T ss_dssp HHHHHHHHHHHHHCCGGGCSS------CHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHcCCCCCCCC------hhHHHHHHHHHHHHHHHHhH
Confidence 777777777777766553 33 12223334455555555443
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.062 Score=55.67 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=51.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 487 LGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
...|...|+++.|+.+.++++...|.+..+|..|+.+|...|+|+.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4557788999999999999999999999999999999999999999999999885
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.90 E-value=1.3 Score=36.30 Aligned_cols=129 Identities=12% Similarity=0.108 Sum_probs=84.6
Q ss_pred HHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHH
Q 037404 320 ACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL 399 (605)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 399 (605)
.....|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|...|+.+.-.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 344567777777776654 2567788888888889999999888887653 34444556667887776666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCC
Q 037404 400 FSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMP 475 (605)
Q Consensus 400 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 475 (605)
-+.....| + ++....++...|+++++.++|.+..+ -|... ......|..+.|.++.++++
T Consensus 83 a~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r----~~eA~------~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 83 QNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGS----LPLAY------AVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTC----HHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCC----hHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence 66555544 1 34445556678999999988876632 22211 11223566777777877764
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.43 E-value=0.57 Score=36.92 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHH
Q 037404 462 GRLKEALRLVQSM---PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTM 519 (605)
Q Consensus 462 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 519 (605)
++.++|.++|+.+ ..+- ...|......-.++|++..|++++.+++...|.+...+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 5666666666655 1112 5666666666778888888888888888877765544433
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.38 E-value=3 Score=38.06 Aligned_cols=181 Identities=14% Similarity=0.076 Sum_probs=109.1
Q ss_pred HHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHH----
Q 037404 223 GYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARL---- 298 (605)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---- 298 (605)
.....|++-+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 22 ~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHH
Confidence 34445666555554 55677778888888888888765 34456667777666664
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCchH-HHHHHHHHHH----HcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 037404 299 YDQMEEAGLKPDDGTLISILAACAESGLLG-LGMKVHASIN----KYR--FKCNTNVCNALVDMYAKCGSLDNAMSVFNG 371 (605)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 371 (605)
++...+.+++++......++..+.....-+ .-..+.+.+. +.| ...++.....+...|.+.|++.+|+..|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 445556688899888888888776533211 1223333333 332 234778889999999999999999887763
Q ss_pred CCCCChhHHHHHHHHHHHc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 372 MTKKDLVSWNAMLYGLAMH---GQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 372 ~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
-...++..+..++.-+... |...++- ...-. .+--|...|+...|..+++...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~R-aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSR-LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHH-HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHH
Confidence 3222444444444333322 2222211 11111 12235567888888888887765
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.01 E-value=7.5 Score=41.36 Aligned_cols=251 Identities=11% Similarity=-0.034 Sum_probs=136.5
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC--ccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCC--C-----CCHHHHHHHHH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAKT--LVP----WTIIISGYAEKGMAKEAARLYDQMEEAGL--K-----PDDGTLISILA 319 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~-----p~~~~~~~ll~ 319 (605)
-+.+..|+.++++.++..-...+ ... -..+.-+....|..+++..++...+...- . +....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34567788888999888866421 112 23444556667776778888877765321 0 11111122222
Q ss_pred HHHccCc-hHHHHHHHHHHHHcCCCCCh--hHHHHHHHHHHhcCChHHHHHHHhcCCC-CChhH--HHHHHHHHHHcCCh
Q 037404 320 ACAESGL-LGLGMKVHASINKYRFKCNT--NVCNALVDMYAKCGSLDNAMSVFNGMTK-KDLVS--WNAMLYGLAMHGQG 393 (605)
Q Consensus 320 ~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~l~~~~~~~~~~ 393 (605)
+.+..|. -+.+...+..+....-. .. ..-.++...++-.|+.+....++..+.+ .+... ...+.-++...|+.
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 3333332 23445555554442211 11 1122344445566777777777665432 22222 23334455578999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH---HHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHH
Q 037404 394 EKALGLFSRMKDEGFGPDKYTFV---GVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRL 470 (605)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~~~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 470 (605)
+.+..+++.+.... .|.. -|. .+..+|+..|+.....+++..+.. ....++.-...+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~--d~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVS--DSNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhcc--CCcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99998888887631 2222 232 344578899998887779988876 3333444444444555566776666777
Q ss_pred HHhCC--CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 037404 471 VQSMP--VEPNAIIWGTLLGACRKHNAV-ELAEEVLDCLIR 508 (605)
Q Consensus 471 ~~~~~--~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 508 (605)
++.+. ..|....-..+.-+....|.. .++...+..+..
T Consensus 617 v~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76552 233333333333333333332 567777777754
No 242
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.84 E-value=12 Score=39.98 Aligned_cols=408 Identities=11% Similarity=0.062 Sum_probs=201.1
Q ss_pred HHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCHHHHHHHHHHHHHhC-
Q 037404 68 AIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIYKCG- 145 (605)
Q Consensus 68 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~- 145 (605)
+.++|.++..| -|-.+++...+.++.+.+.++|..+... .|.. .|-..+. +.+.+.-.-...+.+.+....
T Consensus 221 l~~Iy~k~~~~---dy~~a~~~ai~LnD~~li~~if~~l~~~---~d~l~ayQiAFd-L~~~~~Q~fL~~v~~~l~~~e~ 293 (963)
T 4ady_A 221 SFDFLMNMPNC---DYLTLNKVVVNLNDAGLALQLFKKLKEE---NDEGLSAQIAFD-LVSSASQQLLEILVTELTAQGY 293 (963)
T ss_dssp HHHHHHHSSSC---CHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCch---hHHHHHHHHHHcCCHHHHHHHHHHHHhc---ccHHHHHHHHHH-HhcccchHHHHHHHHhccccch
Confidence 55555555432 4666778888888999999999988642 1221 1211111 112111111111211111100
Q ss_pred ------CCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCee--hHHHHHHHHHhCCChhHH-HHHHh-hcCCC-Cc
Q 037404 146 ------YFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIV--SWNSMIAGLVKGGELSEA-RRLFD-EMPER-DA 214 (605)
Q Consensus 146 ------~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A-~~~~~-~~~~~-~~ 214 (605)
+-.+..+.......+.+.+..+...-..+-..+..++.. +-.++.+++...|-..+. +.... ++.+. +.
T Consensus 294 ~~kL~~ILsg~~~~~Lyl~FL~~~n~~d~~~l~~~K~~ld~r~s~~~~A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~ 373 (963)
T 4ady_A 294 DPALLNILSGLPTCDYYNTFLLNNKNIDIGLLNKSKSSLDGKFSLFHTAVSVANGFMHAGTTDNSFIKANLPWLGKAQNW 373 (963)
T ss_dssp CHHHHHHTTSHHHHHHHHHHHHHHCCCCHHHHHHHHHHSCTTSHHHHHHHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTH
T ss_pred hHHHHHHhCCCChHHHHHHHHHhccccchhhHHHHHhhhcchhhHHHHHHHHHHHHHhCCCCcchhhhcchhhhhccchH
Confidence 011111112222222232211332222221122222222 234566778877765443 22111 11111 21
Q ss_pred chHH-HHHHHHHcCCChHHHHHHHHhCCC----CCh--hHHHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------c
Q 037404 215 VSWN-TILDGYAKAGEMNLAFELFEKIPH----RNI--VSWSTMVWGYSKDGDMEMAKLLFDRMPA-KT----------L 276 (605)
Q Consensus 215 ~~~~-~ll~~~~~~~~~~~a~~~~~~~~~----~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----------~ 276 (605)
.-+. ...-+....|+.+++..+++.... .+. ..-..+.-+.+..|..+++..++..... .+ +
T Consensus 374 ~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~i 453 (963)
T 4ady_A 374 AKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVL 453 (963)
T ss_dssp HHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHH
T ss_pred HHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHH
Confidence 1122 223346678888888888887664 122 2233444455566665667776655332 22 0
Q ss_pred ccHHHHHHHHHhCCC-hHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHH
Q 037404 277 VPWTIIISGYAEKGM-AKEAARLYDQMEEAGLKPDDGTLI--SILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALV 353 (605)
Q Consensus 277 ~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 353 (605)
..-..+.-+++-.|. -+++.+.+..++... .+...... .+...+...|+.+....++..+.+.. +..+...++
T Consensus 454 r~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aa 529 (963)
T 4ady_A 454 LHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLA 529 (963)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHH
Confidence 112333334443443 246667777766532 11111122 33344567788888888887776532 333333333
Q ss_pred H--HHHhcCChHHHHHHHhcCC-CCChh-HHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccC
Q 037404 354 D--MYAKCGSLDNAMSVFNGMT-KKDLV-SWN---AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAG 426 (605)
Q Consensus 354 ~--~~~~~g~~~~A~~~~~~~~-~~~~~-~~~---~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 426 (605)
. ++...|+.+.+..+++.+. ..++. -|. ++.-+|+..|+.....++++.+.... ..+......+.-++...|
T Consensus 530 lgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g 608 (963)
T 4ady_A 530 VGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLR 608 (963)
T ss_dssp HHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSS
T ss_pred HHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccC
Confidence 3 3446788888887777665 23332 233 34456778899877777888888642 223333333334455566
Q ss_pred CHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCH-HHHHHHHHhCCCCCCHHHHHHHHHH
Q 037404 427 FIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRL-KEALRLVQSMPVEPNAIIWGTLLGA 489 (605)
Q Consensus 427 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~~~ 489 (605)
+.+.+..+++.+.+ ...|.+..-..+..+....|.. .++.+.+..+...+|..+-..-+.+
T Consensus 609 ~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 609 DYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp SCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 66666677766655 3345555444555555555543 6788888888545665544333333
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.79 E-value=0.51 Score=38.04 Aligned_cols=28 Identities=4% Similarity=-0.071 Sum_probs=24.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 515 GNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 515 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.-+.++.+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 5667899999999999999999987644
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.40 E-value=3 Score=32.17 Aligned_cols=139 Identities=14% Similarity=0.074 Sum_probs=75.1
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 037404 288 EKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMS 367 (605)
Q Consensus 288 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 367 (605)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. .|. ..+|++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 456666666666666553 23444444444444444433333333333221 111 12344444444
Q ss_pred HHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCC
Q 037404 368 VFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGIL 445 (605)
Q Consensus 368 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 445 (605)
.+-.+.. +.......+..+...|+-|+-.+++..+.. +.+|++.....+..+|.+.|+..+|.+++.++.+ .|++
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~-kG~k 157 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK-KGEK 157 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH-hhhH
Confidence 4333322 233445556667777777777777777543 2366777777777777777877777777777766 3543
No 245
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=92.31 E-value=6.7 Score=36.00 Aligned_cols=167 Identities=12% Similarity=0.083 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLF----SRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 33444557778888888887543 234456667766655544 555567888888888888777665
Q ss_pred cCCHH-HHHHHHHHhHH---hhC--CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037404 425 AGFID-KGVQYFYSMER---DYG--ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVEL 498 (605)
Q Consensus 425 ~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 498 (605)
...-+ .=..+++++++ +.| -.-++.....+...|.+.+++.+|...|- .+..+.+..+..++.-+...+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~--- 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE--- 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC---
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC---
Confidence 54311 11223333332 123 22367777889999999999999999884 3444445666555555544433
Q ss_pred HHHHHHHHHhhcCCCCchHHH-HHHHHHhcCChHHHHHHHHHHHh
Q 037404 499 AEEVLDCLIRLKGSDPGNYTM-LSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 499 A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
|.....+.. .+--|...|+...|..+++...+
T Consensus 183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222222222 22346778899999887777664
No 246
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.85 E-value=5.4 Score=33.92 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=33.0
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGD 260 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (605)
++.......+..+.+.|..+..-.+.+.+..+|...-...+.++...++.+....+.+.+..++..+-...+.++.+.++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333334444444444433333333333333433333344444444443333333333444444444444444444444
Q ss_pred H
Q 037404 261 M 261 (605)
Q Consensus 261 ~ 261 (605)
.
T Consensus 111 ~ 111 (211)
T 3ltm_A 111 E 111 (211)
T ss_dssp G
T ss_pred H
Confidence 3
No 247
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.64 E-value=5.5 Score=33.56 Aligned_cols=105 Identities=11% Similarity=0.149 Sum_probs=45.9
Q ss_pred hHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHH
Q 037404 154 NSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLA 233 (605)
Q Consensus 154 ~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 233 (605)
...+..+...+ +.+....+.+.+..++.......+.++.+.|..+..-.+...+..++...-...+.++...++.+..
T Consensus 32 ~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~ 109 (201)
T 3ltj_A 32 RAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAV 109 (201)
T ss_dssp HHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHH
Confidence 33333444444 3333333344443444444444445555555443333333333444444444444555554544333
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhcCC
Q 037404 234 FELFEKIPHRNIVSWSTMVWGYSKDGD 260 (605)
Q Consensus 234 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 260 (605)
..+.+.+..++..+-...+.++.+.++
T Consensus 110 ~~L~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 110 EPLIKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 333444444444444444444444444
No 248
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.35 E-value=6.1 Score=33.57 Aligned_cols=153 Identities=11% Similarity=0.134 Sum_probs=80.5
Q ss_pred CcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCC
Q 037404 149 DIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG 228 (605)
Q Consensus 149 ~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~ 228 (605)
+..+....+..+...| +.+....+.+.+..+|.......+.++.+.|+.+..-.+.+.+..+|...-...+.++...+
T Consensus 32 ~~~vR~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp SHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC--CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 3333344444444555 44444444444445555555566666666666544444444455566666666666676666
Q ss_pred ChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHH
Q 037404 229 EMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEE 304 (605)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 304 (605)
+.+....+.+.+..++..+-...+.++...|+.+....+...+.+++...-...+.++...+. .++...+..+.+
T Consensus 110 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 110 DERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 655555555555567766666667777666664433334444433333333333444444443 344444444444
No 249
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.96 E-value=0.71 Score=44.18 Aligned_cols=67 Identities=9% Similarity=-0.059 Sum_probs=55.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCC
Q 037404 483 WGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK-----TRAQKPS 549 (605)
Q Consensus 483 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 549 (605)
...++..+...|+++++...+..+...+|-+...+..++.+|.+.|+..+|++.|++..+ .|+.|.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345667777889999999999999999999888999999999999999999999988754 4766655
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.84 E-value=2.6 Score=32.96 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=51.8
Q ss_pred CCchHHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 445 LPQVEHYGCMIDLLGRSGRL---KEALRLVQSM-PVEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
.|+..+--.+..++.+..+. .+++.++++. ...| ....+-.+.-++.+.|++++|+++.+.+++..|.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45555555566666666543 3566666665 2223 2345566778899999999999999999999999876544
No 251
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=89.74 E-value=1.7 Score=33.46 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=46.0
Q ss_pred CchHHHHHHHHHhhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHH
Q 037404 446 PQVEHYGCMIDLLGRSGRL---KEALRLVQSM-PVEP--NAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYT 518 (605)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 518 (605)
|+..+--.+..++.+..+. .+++.++++. ...| ....+-.+.-++.+.|++++|+++.+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 4444444455555555543 3555666555 2223 2345566777888888888888888888888888765443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.68 E-value=14 Score=41.08 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=79.0
Q ss_pred HHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Cc------------------
Q 037404 219 TILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDMEMAKLLFDRMPAK----TL------------------ 276 (605)
Q Consensus 219 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~------------------ 276 (605)
.++..+...+..+.+.++..... .+....-.+..+|...|++++|.+.|.+.... +.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 45555666777777776655543 34444456777888889999998888775311 00
Q ss_pred --cc--HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhH
Q 037404 277 --VP--WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDD----GTLISILAACAESGLLGLGMKVHASINKYRFKCNTNV 348 (605)
Q Consensus 277 --~~--~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 348 (605)
.+ |..++..+-+.+.++.+.++-+..++...+-+. ..|..+...+...|++++|...+-.+..... -...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHH
Confidence 00 455555666666666666665555543211111 1345555666666666666665555543322 2334
Q ss_pred HHHHHHHHHhcCChH
Q 037404 349 CNALVDMYAKCGSLD 363 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~ 363 (605)
...|+...|..|..+
T Consensus 974 Lr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHhCCChh
Confidence 445555555554443
No 253
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.67 E-value=1.5 Score=31.67 Aligned_cols=63 Identities=14% Similarity=0.130 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-+..+-++.+....+-|++......+++|.+.+++..|..+++.++.+.+.. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 445677777888888889999999999999999999999999999998854333 456776664
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.36 E-value=10 Score=36.94 Aligned_cols=185 Identities=11% Similarity=0.051 Sum_probs=120.1
Q ss_pred CCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHH----HHhc
Q 037404 289 KGMAKEAARLYDQMEEA-----GLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDM----YAKC 359 (605)
Q Consensus 289 ~~~~~~a~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 359 (605)
.|+++.|++.+..+.+. +..........++..|...++++...+.+..+.+..-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 37889999888776643 234456678889999999999999888877765432221 2223333333 2223
Q ss_pred CC--hHHHHHHHhcCC---CCC--h-----hHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHh
Q 037404 360 GS--LDNAMSVFNGMT---KKD--L-----VSWNAMLYGLAMHGQGEKALGLFSRMKDE--GFGPD---KYTFVGVLCAC 422 (605)
Q Consensus 360 g~--~~~A~~~~~~~~---~~~--~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~ll~~~ 422 (605)
.. .+.-..+.+.+. +.- . .....+...|...|++.+|.+++..+... |.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 233344444433 111 1 23456778899999999999999998753 32222 23466677889
Q ss_pred cccCCHHHHHHHHHHhHHhh-CCC--Cc--hHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 423 THAGFIDKGVQYFYSMERDY-GIL--PQ--VEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~-~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
...+++.+|..++.++.... ... |+ ...+...+..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875311 122 22 345667788888899999998887765
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.31 E-value=13 Score=33.94 Aligned_cols=168 Identities=10% Similarity=0.012 Sum_probs=101.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhcc
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGL----FSRMKDEGFGPDKYTFVGVLCACTH 424 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 424 (605)
|.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455557778888888887643 23445667777666554 4555567888888888887777655
Q ss_pred cCCHH-HHHHHHHHhHHh---hC--CCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 037404 425 AGFID-KGVQYFYSMERD---YG--ILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKH---NA 495 (605)
Q Consensus 425 ~g~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 495 (605)
...-+ .=.++++++++- .| ..-++.....++..|.+.|++.+|...|-- +..-|...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCCC
Confidence 32111 112333333321 12 223677888899999999999999998863 3122455665555544444 54
Q ss_pred HHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 496 VELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 496 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
..++--++-+ .+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 4433222222 12235577899999998887654
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=88.98 E-value=8.3 Score=32.23 Aligned_cols=104 Identities=8% Similarity=0.064 Sum_probs=66.8
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHH
Q 037404 465 KEALRLVQSM-PVEPNAIIWGTLLGACRK--HNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQ 539 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 539 (605)
+++.+.|... ..+.|+..+..-+.-.-. .+....+..+|..+.... ...+..|...+..+...|++++|.++|+.
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444 345565544333322222 445778888888887754 45566788888888999999999999988
Q ss_pred HHhCCCCCCCceeEEEeCCeEEEEEeCCCCCCChHHHHHHHHHHHHHhhhcCCC
Q 037404 540 MKKTRAQKPSGASSVEVDNEVHEFSVCDQLHPKSEQIYQMINTLGKDLKPVGHA 593 (605)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~g~~ 593 (605)
-++.+-+| .+.+......++..+.+.+++
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCC
Confidence 88865433 235566666777777777663
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.65 E-value=2.8 Score=33.73 Aligned_cols=23 Identities=9% Similarity=0.096 Sum_probs=12.7
Q ss_pred HHHHHHhhhcCCHHHHHHHHHhC
Q 037404 452 GCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 452 ~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
-.+..+|.+.|++++|+.+++.+
T Consensus 126 ykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 126 YKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCHHHHHHHHhcC
Confidence 33555555555555555555555
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=88.50 E-value=15 Score=33.75 Aligned_cols=167 Identities=14% Similarity=0.124 Sum_probs=101.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHHc
Q 037404 248 WSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLY----DQMEEAGLKPDDGTLISILAACAE 323 (605)
Q Consensus 248 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~ 323 (605)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|.++. +-..+.++++|......++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45667778888888888887765 244566677766665554 555567888998888888887766
Q ss_pred cCchH-HHHHHHHHH----HHcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHH
Q 037404 324 SGLLG-LGMKVHASI----NKYR--FKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 324 ~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
...-+ .-..+.+.+ .+.| ...++.....+...|.+.+++.+|+..|-.-..+.+..+..++.-+...+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e- 185 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT- 185 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG-
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc-
Confidence 55321 112233333 2333 345778888999999999999999988853222223455444443333322111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH
Q 037404 397 LGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 397 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
++...-..++ -|...++...|..+++...+
T Consensus 186 -------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 -------------APLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1112222222 35566788888777666554
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.37 E-value=17 Score=34.38 Aligned_cols=162 Identities=11% Similarity=-0.008 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHcCCC----CChhHHHHHHHHHHhcC-ChHHHHHHHhcCC---CCChhHH---
Q 037404 312 GTLISILAACAESGLLGLGMKVHASINKYRFK----CNTNVCNALVDMYAKCG-SLDNAMSVFNGMT---KKDLVSW--- 380 (605)
Q Consensus 312 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~--- 380 (605)
.....+...|.+.|+.++..+++......-.. ........+++.+.... ..+.-.++..+.. ..+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666677777777666666554321100 12233445555554432 2222222222222 0111122
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--H---HHHHHHHHHhcccCCHHHHHHHHHHhHHhh-CCCCchHHH
Q 037404 381 ---NAMLYGLAMHGQGEKALGLFSRMKDEGFGPD--K---YTFVGVLCACTHAGFIDKGVQYFYSMERDY-GILPQVEHY 451 (605)
Q Consensus 381 ---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~ 451 (605)
.-++..|...|++.+|.+++.++.+.=-+.| . ..+..-++.|...+++.++...+....... .+.+++.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 1355666666666666666666655211111 1 223344455666666666666666554321 111222221
Q ss_pred H----HHHHHhh-hcCCHHHHHHHHHh
Q 037404 452 G----CMIDLLG-RSGRLKEALRLVQS 473 (605)
Q Consensus 452 ~----~l~~~~~-~~g~~~~A~~~~~~ 473 (605)
. .-+..+. ..+++.+|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1223344 55666666665544
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=88.35 E-value=4 Score=29.50 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=42.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
++.-+-.+..-|++.+..+.+++|.+.+++..|.++++-+...-.+...+|..++.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33333344667999999999999999999999999999888776555566666643
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.81 E-value=4.3 Score=29.15 Aligned_cols=59 Identities=15% Similarity=0.233 Sum_probs=41.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHH
Q 037404 253 WGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTL 314 (605)
Q Consensus 253 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 314 (605)
..+...|++++|..+.+.+..+++.+|.+|... +.|-.+++...+..+..+| .|....|
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~sg-~p~~q~F 105 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGLGGSS-DPALADF 105 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345677888888888888888888888766543 6777777777777777665 4444444
No 262
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.20 E-value=2.8 Score=43.61 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcC
Q 037404 476 VEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATG 528 (605)
Q Consensus 476 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 528 (605)
.+.+..-|..|+....+.+++++|.+.|+..+.. .-++..+..|.++|.+.+
T Consensus 609 ~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~-RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 609 EKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA-RFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHSCC
T ss_pred cccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcC
Confidence 3455667777777777778888888888887763 355667777778887766
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.11 E-value=1.3 Score=38.96 Aligned_cols=55 Identities=22% Similarity=0.206 Sum_probs=29.2
Q ss_pred hhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 458 LGRSGRLKEALRLVQSM-PVE-PNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
+.+.|++++|++..... +.. -|...-..++..+|-.|++++|..-++.+.+++|.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 44556666665555443 222 23334444555566666666666666666666555
No 264
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.75 E-value=5.9 Score=37.73 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=43.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHH----hhCCCCchHH
Q 037404 382 AMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMER----DYGILPQVEH 450 (605)
Q Consensus 382 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 450 (605)
.++..+...|++++|+..+..+.... +.+...+..++.++...|+..+|.+.|+.+.+ +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34555666677777777777666542 33566677777777777777777777766543 3466666554
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=85.64 E-value=15 Score=30.77 Aligned_cols=156 Identities=13% Similarity=0.066 Sum_probs=86.3
Q ss_pred ChHHHHHHHhccCCCCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChh
Q 037404 167 GVSLAKKLFMSMGERDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIV 246 (605)
Q Consensus 167 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 246 (605)
+...-..+++.+..+|.......+..+.+.|..+..-.+.+.+..+|...-...+.++...+..+....+.+.+..++..
T Consensus 12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~ 91 (201)
T 3ltj_A 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGW 91 (201)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHH
T ss_pred CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHH
Confidence 33444445555556666666667777777776555555555555666665556666666666665555555666667777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 247 SWSTMVWGYSKDGDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 247 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
+-...+.++.+.++.+....+...+.+++...-...+.++...++. .+...+..+.. .++...-...+.++...|+
T Consensus 92 vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 92 VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7677777777777654444444444444443333344444444432 23333434332 2444444444555554444
No 266
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.26 E-value=1.8 Score=38.12 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=23.2
Q ss_pred cccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 423 THAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 423 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
.+.|.++++++....-++ .-+-|...-..|++.+|-.|++++|.+-++..
T Consensus 8 l~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~ 57 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQS 57 (273)
T ss_dssp TTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344444444444444444 33334444444555555555555554444433
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.23 E-value=3.3 Score=31.74 Aligned_cols=63 Identities=14% Similarity=0.142 Sum_probs=50.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHH
Q 037404 392 QGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMID 456 (605)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 456 (605)
+.-+..+-++.+....+-|++......+++|.+.+++..|..+++.++.+. .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 344566777777788889999999999999999999999999999998854 344556777664
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.77 E-value=7.7 Score=27.87 Aligned_cols=88 Identities=15% Similarity=-0.008 Sum_probs=61.7
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
.++.+=.....-++|.-|-+.+...+. -...+. .-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+.
T Consensus 11 E~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~l-IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~ 86 (115)
T 2uwj_G 11 ELALAGSGQHCHEEALCIAEWLERLGQ-DEAARL-IRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAA 86 (115)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHH-HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHH
Confidence 333334444566777788888777664 222222 22345678999999999999999999999977754 57787888
Q ss_pred HHHHHHHHHhCC
Q 037404 99 AFRVFLDMQEKG 110 (605)
Q Consensus 99 a~~~~~~m~~~~ 110 (605)
+..-+.++..+|
T Consensus 87 le~rL~~la~sg 98 (115)
T 2uwj_G 87 LDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHhCC
Confidence 887777777765
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.47 E-value=41 Score=34.15 Aligned_cols=170 Identities=8% Similarity=-0.045 Sum_probs=97.7
Q ss_pred CChHHHHHHHhcCCC---CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCCHHHHH
Q 037404 360 GSLDNAMSVFNGMTK---KDLV----SWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGFIDKGV 432 (605)
Q Consensus 360 g~~~~A~~~~~~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 432 (605)
.+.+.|...+....+ .+.. .+..++..+...+...++...+.+.... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 478899998876641 2222 2333333344455456777777776553 344444445555556789999999
Q ss_pred HHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 037404 433 QYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGS 512 (605)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 512 (605)
..|..+... ........-.+..++...|+.++|..+|+.+.... +|..++. ..+.|..-.. . .....+.
T Consensus 306 ~~~~~l~~~--~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~---~fYg~lA-a~~Lg~~~~~-~----~~~~~~~ 374 (618)
T 1qsa_A 306 TWLARLPME--AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQR---GFYPMVA-AQRIGEEYEL-K----IDKAPQN 374 (618)
T ss_dssp HHHHHSCTT--GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC---SHHHHHH-HHHTTCCCCC-C----CCCCCSC
T ss_pred HHHHHcccc--ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCC---ChHHHHH-HHHcCCCCCC-C----CCCCChh
Confidence 999988551 12234445667788889999999999999984222 3333221 2223321000 0 0000010
Q ss_pred CCc-----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 513 DPG-----NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 513 ~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
... .-...+..+...|...+|...+..+.+
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 111 123345567788998888888777665
No 270
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=83.46 E-value=21 Score=32.00 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=9.2
Q ss_pred HhccCChhHHHHHhcc
Q 037404 59 LALCRQMGLAIKVFND 74 (605)
Q Consensus 59 ~~~~g~~~~A~~~~~~ 74 (605)
.+..|+.+-+..+++.
T Consensus 38 A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 38 AIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhC
Confidence 3455666666665554
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.31 E-value=7.4 Score=43.33 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 482 IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPG-----NYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 482 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
-|..++..+.+.|.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+..
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 3555566666667777777777766665432221 355556666667777777666655544
No 272
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.06 E-value=8.1 Score=27.81 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=60.5
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchH
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQ 98 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 98 (605)
.++.+=.....-++|.-|-+.+...+. -...+. .-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+.
T Consensus 12 E~AL~gTG~H~HqEA~tIAdwL~~~~~-~E~v~l-IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~ 87 (116)
T 2p58_C 12 EIALIGTGNHYHEEANCIAEWLHLKGE-EEAVQL-IRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSA 87 (116)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTC-HHHHHH-HHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHH
T ss_pred HHHHHHccchHHHHHHHHHHHHHhCCc-HHHHHH-HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHH
Confidence 344444445566778888888777664 222222 22344678999999999999999999999987755 45677777
Q ss_pred HHHHHHHHHhCC
Q 037404 99 AFRVFLDMQEKG 110 (605)
Q Consensus 99 a~~~~~~m~~~~ 110 (605)
+..-+.++..+|
T Consensus 88 le~rL~~la~sg 99 (116)
T 2p58_C 88 LESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhCC
Confidence 777776776664
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.45 E-value=11 Score=29.01 Aligned_cols=56 Identities=20% Similarity=0.320 Sum_probs=43.4
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 467 ALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 467 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
++.-+-.+..-|++.+..+.+++|.+.+++..|.++++-+...-.+...+|..++.
T Consensus 75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 33333344677999999999999999999999999999988876555666766643
No 274
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.47 E-value=50 Score=31.95 Aligned_cols=175 Identities=13% Similarity=0.060 Sum_probs=96.4
Q ss_pred CCHHHHHHHHhhCC-----CCCccc----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 037404 259 GDMEMAKLLFDRMP-----AKTLVP----WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACA----ESG 325 (605)
Q Consensus 259 ~~~~~a~~~~~~~~-----~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~ 325 (605)
|+++.|.+.+-.+. ..+..+ ...++..|...++++...+.+.-+....-.. ......++..+. ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 67777777664432 122222 5667888888899988877776665432222 222333443332 223
Q ss_pred chHHHHH--HHHHHHH--cC-CCC---ChhHHHHHHHHHHhcCChHHHHHHHhcCCC----C-----ChhHHHHHHHHHH
Q 037404 326 LLGLGMK--VHASINK--YR-FKC---NTNVCNALVDMYAKCGSLDNAMSVFNGMTK----K-----DLVSWNAMLYGLA 388 (605)
Q Consensus 326 ~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~l~~~~~ 388 (605)
..+.... ....... .| +-. .......|...|...|++.+|.+++..+.. . -+..+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 2222111 1111110 11 111 123345678888889999999888887651 1 1246666778888
Q ss_pred HcCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHhcccCCHHHHHHH
Q 037404 389 MHGQGEKALGLFSRMKD----EGFGPDK--YTFVGVLCACTHAGFIDKGVQY 434 (605)
Q Consensus 389 ~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~ 434 (605)
..+++.+|..++.++.. ....|+. ..+...+..+...+++.+|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~ 240 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY 240 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 88999999988888642 2222222 2344445555566666655443
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.27 E-value=6.5 Score=38.07 Aligned_cols=96 Identities=6% Similarity=-0.121 Sum_probs=54.3
Q ss_pred HHHHHHHHhcccCCHHHHHHHHHHhHHhh-CCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC----CCCCCHHHHHH---
Q 037404 414 TFVGVLCACTHAGFIDKGVQYFYSMERDY-GILPQVEHYGCMIDLLGRSGRLKEALRLVQSM----PVEPNAIIWGT--- 485 (605)
Q Consensus 414 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~--- 485 (605)
+...+...|.+.|+++.|.+.+.++.... +...-...+-..+..+...+++..+...+.++ ...++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45556677777777777777777776632 12223455666667777777777777776665 11222221111
Q ss_pred -HHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 486 -LLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 486 -l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
-+..+...+++..|-..|-++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 112233456777777766666553
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.78 E-value=23 Score=34.19 Aligned_cols=93 Identities=10% Similarity=-0.016 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC------CChhHHHHHHHHHHHcCChHHHHHHHHHHHH---CCCCCCHHHH--H
Q 037404 348 VCNALVDMYAKCGSLDNAMSVFNGMTK------KDLVSWNAMLYGLAMHGQGEKALGLFSRMKD---EGFGPDKYTF--V 416 (605)
Q Consensus 348 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g~~p~~~~~--~ 416 (605)
+...+...|.+.|+++.|.+.|.++.. .-...+-.+++.+...+++..+...+.+... .+-.|+...- .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677777777888777777776652 1234566667777777777777777777653 2223332221 1
Q ss_pred HHHHHhcccCCHHHHHHHHHHhHH
Q 037404 417 GVLCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 417 ~ll~~~~~~g~~~~a~~~~~~~~~ 440 (605)
.-...+...+++..|...|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112234456677777777766655
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.64 E-value=18 Score=28.69 Aligned_cols=80 Identities=9% Similarity=0.075 Sum_probs=48.6
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 465 KEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 465 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+.+.+.|... ..+.|+..+..-+.-.-...+ +..+|..+.... ...+..|...+..+...|++++|.++++.-+
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYNSD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555444 344565544433332222222 667777777653 4455667778888888888888888888888
Q ss_pred hCCCCC
Q 037404 542 KTRAQK 547 (605)
Q Consensus 542 ~~~~~~ 547 (605)
+.+-+|
T Consensus 129 ~~~A~P 134 (152)
T 4a1g_A 129 QNQAEP 134 (152)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 765433
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.46 E-value=28 Score=28.01 Aligned_cols=79 Identities=14% Similarity=0.087 Sum_probs=45.5
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 466 EALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 466 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
++.+.|... ..+.|+..+..-+.---..++ +..+|..+.... ...+..|...+..+...|++.+|.++|+.-++
T Consensus 48 rc~~~f~~~~~YknD~RyLklWl~ya~~~~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 48 RAVEALQGEKRYYSDPRFLNLWLKLGRLCNE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp HHHHHTTTCGGGTTCHHHHHHHHHHHHHCSC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhccCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333344333 344555544433322222233 556666666643 44556677777778888888888888888877
Q ss_pred CCCCC
Q 037404 543 TRAQK 547 (605)
Q Consensus 543 ~~~~~ 547 (605)
.+-.|
T Consensus 125 ~~A~P 129 (164)
T 2wvi_A 125 QKAEP 129 (164)
T ss_dssp TTCBS
T ss_pred cCCCc
Confidence 65433
No 279
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=67.63 E-value=88 Score=29.90 Aligned_cols=14 Identities=29% Similarity=0.553 Sum_probs=6.5
Q ss_pred HhcCCHHHHHHHHh
Q 037404 256 SKDGDMEMAKLLFD 269 (605)
Q Consensus 256 ~~~~~~~~a~~~~~ 269 (605)
+..|+.+-+..+++
T Consensus 220 ~~~~~~~~~~~Ll~ 233 (437)
T 1n11_A 220 AKQNQVEVARSLLQ 233 (437)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34445444444444
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=67.21 E-value=90 Score=29.84 Aligned_cols=234 Identities=12% Similarity=0.021 Sum_probs=124.3
Q ss_pred HHHhhcCCchHHHHHHHHHHHhCCCCCCcc--hHHHHHHHhccCChhHHHHHhcccCCC---CcccHHHHHHHHHhCCCc
Q 037404 22 QNLHKCKNLNQTKQLFAQIIKLDLQRDPYI--APKLISSLALCRQMGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLN 96 (605)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~ 96 (605)
..-...|+++ +.+.+++.|..++... ....+...+..|+.+-+.-+++.-... +..-++ .+...++.|+.
T Consensus 19 ~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~g~~ 93 (437)
T 1n11_A 19 HVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQT-PLHCAARIGHT 93 (437)
T ss_dssp HHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCC-HHHHHHHHTCH
T ss_pred HHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHCCCH
Confidence 3334456655 4455556676555322 223455557789998888888754432 222233 34444556665
Q ss_pred hHHHHHHHHHHhCCCCCCccc--HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcc--hhhHHHHHHHhcCCCChHHHH
Q 037404 97 AQAFRVFLDMQEKGVFTDNFT--YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF--VPNSLIDSYSKCGVVGVSLAK 172 (605)
Q Consensus 97 ~~a~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~~~a~ 172 (605)
+ +++.+.+.|..|+... -...+...+..|+.+.+..++ +.+..++.. ...+.+...+..| +.+-+.
T Consensus 94 ~----~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~ 163 (437)
T 1n11_A 94 N----MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL----EKEASQACMTKKGFTPLHVAAKYG--KVRVAE 163 (437)
T ss_dssp H----HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTT--CHHHHH
T ss_pred H----HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH----hCCCCCcCCCCCCCCHHHHHHHcC--CHHHHH
Confidence 4 3444455565544321 122334445667776655554 445433221 1223455666778 888888
Q ss_pred HHHhccCCCCe---ehHHHHHHHHHhCCChhHHHHHHhhcCCCCcch--HHHHHHHHHcCCChHHHHHHHHhCCCCChh-
Q 037404 173 KLFMSMGERDI---VSWNSMIAGLVKGGELSEARRLFDEMPERDAVS--WNTILDGYAKAGEMNLAFELFEKIPHRNIV- 246 (605)
Q Consensus 173 ~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~- 246 (605)
.+++.-..++. ... +.+...+..|+.+-+..+++.-..++... -...+...+..|+.+-+..+++.....+..
T Consensus 164 ~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 242 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGL-TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES 242 (437)
T ss_dssp HHHHTTCCTTCCCSSCC-CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 88776544322 122 23445567788776666666543332211 112345566788888888888765432221
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHhhC
Q 037404 247 -SWSTMVWGYSKDGDMEMAKLLFDRM 271 (605)
Q Consensus 247 -~~~~l~~~~~~~~~~~~a~~~~~~~ 271 (605)
.-.+.+...+..|+.+-+..+++.-
T Consensus 243 ~~g~t~L~~A~~~g~~~~v~~Ll~~~ 268 (437)
T 1n11_A 243 VQGVTPLHLAAQEGHAEMVALLLSKQ 268 (437)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHhcC
Confidence 0112233445677777776666653
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.74 E-value=73 Score=27.92 Aligned_cols=83 Identities=16% Similarity=0.001 Sum_probs=36.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc---cHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcch--hhHHHHH
Q 037404 85 TLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF---TYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV--PNSLIDS 159 (605)
Q Consensus 85 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~ 159 (605)
+.+...++.|+.+.. +.+.+.|..++.. .-.+.+...+..|+.+- ++.+++.|..++... ..+.+..
T Consensus 7 ~~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLV----QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHHHH----HHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHH
Confidence 344455666665433 3444555444332 11233444445555543 334445555443321 1233334
Q ss_pred HHhcCCCChHHHHHHHhc
Q 037404 160 YSKCGVVGVSLAKKLFMS 177 (605)
Q Consensus 160 ~~~~g~~~~~~a~~~~~~ 177 (605)
.+..| +.+-+..+++.
T Consensus 79 A~~~~--~~~~v~~Ll~~ 94 (285)
T 1wdy_A 79 AAIAG--SVKLLKLFLSK 94 (285)
T ss_dssp HHHHT--CHHHHHHHHHT
T ss_pred HHHcC--CHHHHHHHHHc
Confidence 44455 55555555443
No 282
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.74 E-value=32 Score=33.74 Aligned_cols=62 Identities=11% Similarity=0.056 Sum_probs=28.3
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHHhCCCCC----CHH--HH-HHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 037404 450 HYGCMIDLLGRSGRLKEALRLVQSMPVEP----NAI--IW-GTLLGACRKHNAVELAEEVLDCLIRLKG 511 (605)
Q Consensus 450 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~--~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p 511 (605)
.++.++..|...+.++.|..+..+...+. +.. .| ..++..+.-.+++.+|.+.+..+.+..|
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 44555555555555555555555542211 111 11 1223344445555555555555555443
No 283
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=62.65 E-value=41 Score=30.01 Aligned_cols=68 Identities=10% Similarity=0.066 Sum_probs=28.2
Q ss_pred cCChhHHHHHhcccC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhccCCHHHH
Q 037404 62 CRQMGLAIKVFNDIQ--DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGKNWFHLV 134 (605)
Q Consensus 62 ~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 134 (605)
..+..+..+++..-. .+|..-++. +...+..|+.+-+. .+.+.|..++...-.+.+...+..|+.+-+
T Consensus 9 ~~~~~~v~~lL~~~~~~~~d~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 9 TWKSKQLKSFLSSKDTFKADVHGHSA-SYYAIADNNVRLVC----TLLNAGALKNLLENEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GCCHHHHHHHHHSTTTTCCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTGGGSCCTTCCHHHHHTTSSSCHHH
T ss_pred hcCHHHHHHHHHhCCCCccCCCCCCH-HHHHHHcCCHHHHH----HHHhCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence 445555566554322 223333333 33334455554333 333444443332222333444455555433
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=58.92 E-value=84 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=16.0
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCC
Q 037404 87 IRACVQNSLNAQAFRVFLDMQEKGVFTD 114 (605)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~m~~~~~~p~ 114 (605)
+...++.|+.+....+++.+.+.|..++
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 3444556666666666666555554444
No 285
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=56.90 E-value=1.1e+02 Score=27.65 Aligned_cols=61 Identities=10% Similarity=0.105 Sum_probs=44.3
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 470 LVQSMPVEPNAI--IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 470 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+|...+..|... ++..-+..+.+.+++..|..+.++++++.|... ..++|.+++....+.+
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 344446666533 566777888999999999999999999888521 3455788887776653
No 286
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=54.67 E-value=89 Score=26.48 Aligned_cols=10 Identities=10% Similarity=0.122 Sum_probs=4.4
Q ss_pred ChHHHHHHHh
Q 037404 167 GVSLAKKLFM 176 (605)
Q Consensus 167 ~~~~a~~~~~ 176 (605)
+.+-+..+++
T Consensus 89 ~~~~~~~Ll~ 98 (237)
T 3b7b_A 89 HYEVVQYLLS 98 (237)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHHh
Confidence 4444444443
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.27 E-value=74 Score=25.19 Aligned_cols=46 Identities=9% Similarity=0.144 Sum_probs=23.5
Q ss_pred HHHHHhhCCCCCccc-----HHHHHHHHHhCCChHHHHHHHHHHHHcCCCC
Q 037404 264 AKLLFDRMPAKTLVP-----WTIIISGYAEKGMAKEAARLYDQMEEAGLKP 309 (605)
Q Consensus 264 a~~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p 309 (605)
+.++|..|...++-+ |......+-..|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 444444444333322 4455555555566666666665555555444
No 288
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=52.33 E-value=1.1e+02 Score=25.89 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=7.1
Q ss_pred HHcCCChHHHHHHHHh
Q 037404 224 YAKAGEMNLAFELFEK 239 (605)
Q Consensus 224 ~~~~~~~~~a~~~~~~ 239 (605)
.+..|+.+-+.-+++.
T Consensus 184 A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 184 AVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHc
Confidence 3344444444444444
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=52.07 E-value=1e+02 Score=25.70 Aligned_cols=58 Identities=12% Similarity=0.050 Sum_probs=40.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcccCCHHHHHHHHHHhHHhhCCCCch
Q 037404 390 HGQGEKALGLFSRMKDEGFGPDK-YTFVGVLCACTHAGFIDKGVQYFYSMERDYGILPQV 448 (605)
Q Consensus 390 ~~~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 448 (605)
.+...++..+|..|...|+--.. .-|......+...|++.+|.++|+.-++ .+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccHH
Confidence 34466788888888887765543 4566667777778888888888888777 4556643
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.54 E-value=1.2e+02 Score=26.37 Aligned_cols=14 Identities=7% Similarity=0.309 Sum_probs=6.7
Q ss_pred HhcCCHHHHHHHHh
Q 037404 256 SKDGDMEMAKLLFD 269 (605)
Q Consensus 256 ~~~~~~~~a~~~~~ 269 (605)
++.|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455555444444
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.25 E-value=1.3e+02 Score=32.62 Aligned_cols=86 Identities=9% Similarity=-0.179 Sum_probs=50.3
Q ss_pred HHHHhcccCCHHHHHHHHHHhHHhhCCCCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCC-----------------
Q 037404 418 VLCACTHAGFIDKGVQYFYSMERDYGILPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEP----------------- 478 (605)
Q Consensus 418 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p----------------- 478 (605)
++..|...|.++-+.++.. -.+.++..--.++.+|...|++++|.++|+++ ++..
T Consensus 816 l~~~L~~~~~~~~a~eL~~------~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG------WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG------GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHh------hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCc
Confidence 4555666666665544332 22233333345666777778888888888776 2211
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 037404 479 ------NAIIWGTLLGACRKHNAVELAEEVLDCLIRL 509 (605)
Q Consensus 479 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 509 (605)
....|..++..+.+.+.++-+.++.+.+++.
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1124556666666777777777777777764
No 292
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=50.59 E-value=68 Score=23.18 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=45.0
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037404 353 VDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVG 417 (605)
Q Consensus 353 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 417 (605)
+..+...|++++|..+.+...-||...|.++.. .+.|..+++...+.++...| .|....|..
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFVN 108 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 344667888999999888888888888876654 45677788887777777766 555555543
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.03 E-value=62 Score=27.55 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhhc--CCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 498 LAEEVLDCLIRLK--GSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 498 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.+..+|..+.... ...+..|...+..+...|++.+|.++|+.-++.+-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 4556666666643 44555677777778888888888888887777544
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.93 E-value=28 Score=34.10 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------CchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037404 480 AIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSD-------PGNYTMLSNIFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 480 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
...++.+++.|...+.++.|..+..+.. .|.+ ...++.+|.++.-.++|.+|.+.+..+....+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap 301 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 5578889999999999999999999875 5543 23466789999999999999999999887543
No 295
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=47.92 E-value=66 Score=31.62 Aligned_cols=57 Identities=19% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 486 LLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 486 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
|+....-...++.|..+|.++..+.|.+...|+.|+-+....|+.-+|.-+|-+...
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~ 214 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence 344444455667777777777777777777777777777777777666666655544
No 296
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.11 E-value=2.5e+02 Score=28.70 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.8
Q ss_pred hhhcCCHHHHHHHHHhCCCCCC
Q 037404 458 LGRSGRLKEALRLVQSMPVEPN 479 (605)
Q Consensus 458 ~~~~g~~~~A~~~~~~~~~~p~ 479 (605)
+...|+++.|++.++++++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHHTSCSCC
T ss_pred HHHcCCHHHHHHHHHhCCCCCC
Confidence 4788999999999999865554
No 297
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.02 E-value=62 Score=24.77 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHH
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDL---VSWNAMLYGLAMHGQ--GEKALGLFSRMKDEGFGPDKY 413 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 413 (605)
...++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+....++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34567777778888888888888765522 233344444444332 356677777777776544433
No 298
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.99 E-value=1.5e+02 Score=25.92 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=55.8
Q ss_pred CCeehHHHHHHHHHhCCChhHHHHHHhhcCCCCcchHHHHHHHHHcCC--ChHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 037404 181 RDIVSWNSMIAGLVKGGELSEARRLFDEMPERDAVSWNTILDGYAKAG--EMNLAFELFEKIPHRNIVSWSTMVWGYSKD 258 (605)
Q Consensus 181 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 258 (605)
++.......+.++...|+.+..-.+...+..++...-...+.++...| ..+....+.+.+..++..+-...+.++.+.
T Consensus 140 ~~~~vR~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 140 KSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp SCHHHHHHHHHHHHTC---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 444444444444555444322222222223444443333344444333 222222333444456666666666666666
Q ss_pred CCHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 037404 259 GDMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKEAARLYDQMEEA 305 (605)
Q Consensus 259 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 305 (605)
|+......+...+..+++ -...+.++...|+ ..+...+..+...
T Consensus 220 ~~~~~~~~L~~~l~d~~v--r~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 220 KDKRVLSVLCDELKKNTV--YDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp TCGGGHHHHHHHHTSSSC--CHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred CCHhhHHHHHHHhcCccH--HHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 665544444444444332 2233455555565 3566666666654
No 299
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=45.75 E-value=2.3e+02 Score=28.93 Aligned_cols=18 Identities=6% Similarity=0.174 Sum_probs=15.0
Q ss_pred HHhcCChHHHHHHHHHHH
Q 037404 524 FAATGDWNKVANVRLQMK 541 (605)
Q Consensus 524 ~~~~g~~~~A~~~~~~~~ 541 (605)
+...|+|++|++.+++..
T Consensus 548 ~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 548 LYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHTTCHHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 388999999999888754
No 300
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=45.55 E-value=1.4e+02 Score=25.23 Aligned_cols=111 Identities=15% Similarity=0.086 Sum_probs=50.7
Q ss_pred HHHHHHhcCCCChHHHHHHHhccCCC---CeehHHHHHHHHHhCCChhHHHHHHhhc-CCC---CcchHHHHHHHHHcCC
Q 037404 156 LIDSYSKCGVVGVSLAKKLFMSMGER---DIVSWNSMIAGLVKGGELSEARRLFDEM-PER---DAVSWNTILDGYAKAG 228 (605)
Q Consensus 156 l~~~~~~~g~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~---~~~~~~~ll~~~~~~~ 228 (605)
.+...+..| +.+-+..+++.-... +.... ..+...+..|+.+-+..+++.- ..+ +.... ..+...+..|
T Consensus 47 ~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~ 122 (237)
T 3b7b_A 47 PLMEAAENN--HLEAVKYLIKAGALVDPKDAEGS-TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-TPMIWATEYK 122 (237)
T ss_dssp HHHHHHHTT--CHHHHHHHHTTTCCCCCCCTTSC-CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSC-CHHHHHHHTT
T ss_pred HHHHHHHhC--CHHHHHHHHhCCCCCCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCC-CHHHHHHHcC
Confidence 334444555 666555555543322 11111 2233445667766666666543 111 11111 2233444567
Q ss_pred ChHHHHHHHHhCCCCChh--HHHHHHHHHHhcCCHHHHHHHHhh
Q 037404 229 EMNLAFELFEKIPHRNIV--SWSTMVWGYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 229 ~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~ 270 (605)
+.+-...+++....++.. .-.+.+...+..|+.+-+.-+++.
T Consensus 123 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 166 (237)
T 3b7b_A 123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166 (237)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTT
T ss_pred CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 776666666654432211 011223333455666655555554
No 301
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.80 E-value=1.4e+02 Score=25.17 Aligned_cols=83 Identities=10% Similarity=-0.023 Sum_probs=39.0
Q ss_pred HHHhhcCCchHHHHHHHHHHHhCCCCCCcc--hHHHHHHHhccCChhHHHHHhcccCCC---CcccHHHHHHHHHhCCCc
Q 037404 22 QNLHKCKNLNQTKQLFAQIIKLDLQRDPYI--APKLISSLALCRQMGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLN 96 (605)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~ 96 (605)
-.....|+.+.+..+.+.+.+.|..++... -...+...+..|+.+-+..+++.-..+ +..-++ .+...+..|+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~ 92 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT-AAHLACEHRSP 92 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC-HHHHHHHcCCH
Confidence 334455677666666666666654444321 112333345566666665555533322 222222 23333455555
Q ss_pred hHHHHHHHH
Q 037404 97 AQAFRVFLD 105 (605)
Q Consensus 97 ~~a~~~~~~ 105 (605)
+-...+++.
T Consensus 93 ~~~~~Ll~~ 101 (241)
T 1k1a_A 93 TCLRALLDS 101 (241)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 544444433
No 302
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=44.34 E-value=1.4e+02 Score=25.04 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=8.0
Q ss_pred HHHhcCCHHHHHHHHhh
Q 037404 254 GYSKDGDMEMAKLLFDR 270 (605)
Q Consensus 254 ~~~~~~~~~~a~~~~~~ 270 (605)
..+..|+.+-+.-+++.
T Consensus 183 ~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 183 WAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33444555544444443
No 303
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=42.89 E-value=74 Score=27.49 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=19.9
Q ss_pred CCchHHHHHHHHHhhhcCCHHHHHHHHHhC
Q 037404 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM 474 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 474 (605)
.++.......+..+.+.|+.++|.++|-+.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 344555556667777888888888777443
No 304
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=41.75 E-value=1.1e+02 Score=24.10 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGM--AKEAARLYDQMEEAGLKP 309 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 309 (605)
..++.-|...|+.++|.+.++++..+.... ...+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445555555666666666666654332111 2222223333211 334555555555555433
No 305
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.74 E-value=2.1e+02 Score=26.26 Aligned_cols=85 Identities=7% Similarity=-0.041 Sum_probs=39.7
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcch--HHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCc
Q 037404 19 EKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIA--PKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLN 96 (605)
Q Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 96 (605)
+.+-.-...|+.+.+. .+++.|..++.... ...+...+..|+.+-+.-+++.-..++...-.+.+...+..|+.
T Consensus 22 t~L~~Aa~~g~~~~v~----~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 22 EKIHVAARKGQTDEVR----RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 3333444446554433 34445544443211 12334445667777666666654433321122233344556666
Q ss_pred hHHHHHHHHHH
Q 037404 97 AQAFRVFLDMQ 107 (605)
Q Consensus 97 ~~a~~~~~~m~ 107 (605)
+-+..+++.-.
T Consensus 98 ~~v~~Ll~~~~ 108 (364)
T 3ljn_A 98 DLVVALVEGAK 108 (364)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 65555555533
No 306
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=40.82 E-value=87 Score=27.03 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=12.5
Q ss_pred HHHhcccCCHHHHHHHHHHhHH
Q 037404 419 LCACTHAGFIDKGVQYFYSMER 440 (605)
Q Consensus 419 l~~~~~~g~~~~a~~~~~~~~~ 440 (605)
+..+....++++|..++++..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4455555666666666655543
No 307
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=39.63 E-value=3.9e+02 Score=28.83 Aligned_cols=48 Identities=4% Similarity=-0.010 Sum_probs=31.9
Q ss_pred HHHHHHHHHHccCchHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHhcC
Q 037404 313 TLISILAACAESGLLGLGMKVHASINKYRFKCNT----NVCNALVDMYAKCG 360 (605)
Q Consensus 313 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 360 (605)
-|..++..+.+.+.++.+.++-+.+.+.-.+-+. ..++.+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 4677778888888888888887777754322222 35667777766554
No 308
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=38.78 E-value=1.6e+02 Score=24.35 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCCCHH--HH-----HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 464 LKEALRLVQSMPVEPNAI--IW-----GTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 464 ~~~A~~~~~~~~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
++.|+.+++.++..-+.. .. ...+..|.+.|.+++|.+++++.....+.+...-..|..+-.+..-
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 566777777774332211 11 2334668889999999999998777666655555555554444433
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=38.71 E-value=1.3e+02 Score=25.88 Aligned_cols=53 Identities=8% Similarity=-0.091 Sum_probs=27.0
Q ss_pred HHHhCCCchHHHHHHHHHHhCCCCCCccc-------HHHHHHHhh--ccCCHHHHHHHHHHH
Q 037404 89 ACVQNSLNAQAFRVFLDMQEKGVFTDNFT-------YPFLLKACN--GKNWFHLVQMIHALI 141 (605)
Q Consensus 89 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 141 (605)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34556666666666666666555444222 223333321 456666555555543
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.48 E-value=1.3e+02 Score=22.92 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHhCCC--hHHHHHHHHHHHHcCCCC
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAEKGM--AKEAARLYDQMEEAGLKP 309 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p 309 (605)
..++.-|...|+.++|.+.++++..+.... ...+..++-+.++ .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 445555666666666666666654332211 2222333333321 344556666666555443
No 311
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.18 E-value=1.8e+02 Score=24.37 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=10.8
Q ss_pred HHHHhccCChhHHHHHhcc
Q 037404 56 ISSLALCRQMGLAIKVFND 74 (605)
Q Consensus 56 ~~~~~~~g~~~~A~~~~~~ 74 (605)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3344556666666666654
No 312
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.11 E-value=57 Score=25.85 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCh---hHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHH
Q 037404 349 CNALVDMYAKCGSLDNAMSVFNGMTKKDL---VSWNAMLYGLAMHGQ--GEKALGLFSRMKDEGFGPDKY 413 (605)
Q Consensus 349 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~ 413 (605)
...++.-|...|+.++|.+.++++..|.. .+...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 34567777778888888888888765522 233344444444322 345667777777776544433
No 313
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=37.43 E-value=2.6e+02 Score=27.56 Aligned_cols=68 Identities=9% Similarity=0.060 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHh-hcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 477 EPNAIIWGTLLGACRKHNAVELAEEV----LDCLIR-LKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 477 ~p~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
.+|......+..-+...|..++-+++ ++..++ ..|++......|-..|.+.|++-+|.+++-.+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45666666666667777765544322 222222 246667777778888899999999999999888763
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.21 E-value=2e+02 Score=24.05 Aligned_cols=15 Identities=0% Similarity=-0.106 Sum_probs=7.7
Q ss_pred hccCChhHHHHHhcc
Q 037404 60 ALCRQMGLAIKVFND 74 (605)
Q Consensus 60 ~~~g~~~~A~~~~~~ 74 (605)
+..|+.+-+..+++.
T Consensus 48 ~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 48 CSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHh
Confidence 445555555555543
No 315
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=35.11 E-value=2.6e+02 Score=25.36 Aligned_cols=61 Identities=13% Similarity=0.084 Sum_probs=43.5
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037404 470 LVQSMPVEPNAI--IWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKKTR 544 (605)
Q Consensus 470 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 544 (605)
+|...+..|... ++..-+....+.+++..|..+.++++++.|... ..++|.+++....+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 344446666543 566777888899999999999999999876511 2344777777776654
No 316
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.77 E-value=2.3e+02 Score=24.72 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=9.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 037404 487 LGACRKHNAVELAEEVLDCLIR 508 (605)
Q Consensus 487 ~~~~~~~g~~~~A~~~~~~~~~ 508 (605)
+.++.+.|+ ..+...+.++.+
T Consensus 242 ~~aL~~i~~-~~~~~~L~~~l~ 262 (280)
T 1oyz_A 242 IEAAGELGD-KTLLPVLDTMLY 262 (280)
T ss_dssp HHHHHHHCC-GGGHHHHHHHHT
T ss_pred HHHHHhcCc-hhhhHHHHHHHh
Confidence 444444454 244555555544
No 317
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.67 E-value=1.8e+02 Score=23.36 Aligned_cols=82 Identities=9% Similarity=0.021 Sum_probs=53.7
Q ss_pred hHHHHHhcccC--CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHhhccCCHHHHHHHHHHHH
Q 037404 66 GLAIKVFNDIQ--DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNF-TYPFLLKACNGKNWFHLVQMIHALIY 142 (605)
Q Consensus 66 ~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~ 142 (605)
+.+.+.|.... +.|+.-...-|. |+.. .+.+.++|..|..+|+-.... .|..-...+-..|++..|..++..-+
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~-ya~~--~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLK-LGRL--CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHH-HHHH--CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHH-HHHh--cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45556665544 355543333232 2221 144778899999998765443 46666666788899999999999998
Q ss_pred HhCCCCCc
Q 037404 143 KCGYFGDI 150 (605)
Q Consensus 143 ~~~~~~~~ 150 (605)
+.+..|-.
T Consensus 124 ~~~A~P~~ 131 (164)
T 2wvi_A 124 QQKAEPLE 131 (164)
T ss_dssp HTTCBSHH
T ss_pred HcCCCcHH
Confidence 88877653
No 318
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=33.70 E-value=2.5e+02 Score=24.71 Aligned_cols=116 Identities=9% Similarity=-0.016 Sum_probs=38.8
Q ss_pred hHHHHHHHhccCChhHHHHHhcccC--------------CCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037404 52 APKLISSLALCRQMGLAIKVFNDIQ--------------DPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT 117 (605)
Q Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~~~--------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 117 (605)
....+...+..|+.++..++....+ ..+..-++. +...+..|+.+- ++.+.+.|..++...
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~-L~~Aa~~g~~~~----v~~Ll~~g~~~~~~~ 89 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSP-MHEAAIHGHQLS----LRNLISQGWAVNIIT 89 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSSCCSCCH-HHHHHHTTCHHH----HHHHHHTTCCSCEEC
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCH-HHHHHHcCCHHH----HHHHHHCCCCCCCcC
Confidence 3445555566677666666433211 123333333 334455666543 344444555443321
Q ss_pred --HHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcch--hhHHHHHHHhcCCCChHHHHHHHhcc
Q 037404 118 --YPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIFV--PNSLIDSYSKCGVVGVSLAKKLFMSM 178 (605)
Q Consensus 118 --~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~a~~~~~~~ 178 (605)
-.+.+...+..|+.+-++ .+++.|..++... ..+-+...+..| +.+-+..+++.-
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g 148 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVK----ILLKHGAQVNGVTADWHTPLFNACVSG--SWDCVNLLLQHG 148 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHH----HHHHTTCCSSCCCTTCCCHHHHHHHHT--CHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHCCcHHHHH----HHHHCCCCCCCCCCCCCCHHHHHHHcC--HHHHHHHHHHCC
Confidence 112233334555554443 3344455443221 122333344455 666555555543
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.35 E-value=2.7e+02 Score=25.11 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccCC--HHHHHHHHHHhHH
Q 037404 380 WNAMLYGLAMHGQGEKALGLFSRMKDEGFGPDKYTFVGVLCACTHAGF--IDKGVQYFYSMER 440 (605)
Q Consensus 380 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~ 440 (605)
...++.-|...|+.++|...++++....+. .......+..+..+.++ .+....++..+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 345666676777777777777766421111 11223334444444322 3344455555554
No 320
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=31.15 E-value=1.9e+02 Score=24.33 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=16.4
Q ss_pred HHHhhhcCCHHHHHHHHHhC-CCCCCHH
Q 037404 455 IDLLGRSGRLKEALRLVQSM-PVEPNAI 481 (605)
Q Consensus 455 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 481 (605)
+..|.+.|.+++|.+++++. +..++..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 34566777777777777765 4333433
No 321
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=31.05 E-value=3.4e+02 Score=25.55 Aligned_cols=91 Identities=9% Similarity=0.050 Sum_probs=50.9
Q ss_pred CCchHHHHHHHHHhhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHH
Q 037404 445 LPQVEHYGCMIDLLGRSGRLKEALRLVQSM--PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSN 522 (605)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 522 (605)
.|....+..++.+| ..+++.+..++++.. .+..|......+-..+.+ --...+.++ ..|-....+..++.
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~-----Ir~~~L~~i--~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDT-----MLEQNLCRI--IEPYSRVQVAHVAE 324 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHH-----HHHHHHHHH--HTTCSEEEHHHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH-----HHHHHHHHH--hHhhceeeHHHHHH
Confidence 45555566666654 556777777777765 234454432111111100 001111111 14666667778887
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC
Q 037404 523 IFAATGDWNKVANVRLQMKKTRA 545 (605)
Q Consensus 523 ~~~~~g~~~~A~~~~~~~~~~~~ 545 (605)
.+.- ..++++..+-+|+..|.
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHCc--CHHHHHHHHHHHHHCCC
Confidence 7654 68899999999998764
No 322
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.03 E-value=64 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=20.8
Q ss_pred CHHHHHHHHhhCCCCCcccHHHHHHHHHhCCChHH
Q 037404 260 DMEMAKLLFDRMPAKTLVPWTIIISGYAEKGMAKE 294 (605)
Q Consensus 260 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 294 (605)
..++|.++++.+..+++..|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 45666666666666666666666666655454433
No 323
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=28.90 E-value=3.4e+02 Score=24.80 Aligned_cols=13 Identities=0% Similarity=-0.115 Sum_probs=5.8
Q ss_pred cCCChHHHHHHHH
Q 037404 226 KAGEMNLAFELFE 238 (605)
Q Consensus 226 ~~~~~~~a~~~~~ 238 (605)
..|+.+-+..+++
T Consensus 182 ~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 182 EFRNREALDLMMD 194 (364)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 3444444444444
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=27.89 E-value=57 Score=23.43 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHhc-c-CChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHH
Q 037404 35 QLFAQIIKLDLQRDPYIAPKLISSLAL-C-RQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQA 99 (605)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 99 (605)
.+++.+++.|+ .+.. -.=..... . .+.+.|.++++.+++.+..+|..++.++...|+..-|
T Consensus 25 ~vld~L~~~~v-lt~~---~~e~I~~~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 25 QLWDVLLSREL-FRPH---MIEDIQRAGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp TTHHHHHHTTS-SCHH---HHHHHHTSTTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHcCC-CCHH---HHHHHHhccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 46777777664 2221 11112222 2 4788899999998888888899999988776665544
No 325
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=27.73 E-value=83 Score=22.23 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCCCCCcchHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCch
Q 037404 33 TKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNA 97 (605)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 97 (605)
...+++.+.+.|+ .+..-+..+ .+.....+.|..+++.++..+..+|..++.++...+...
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I---~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~ 84 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKV---RNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKD 84 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHH---HTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHH---HcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHH
Confidence 4567888887775 333222222 234678889999999999888889999999988877543
No 326
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=27.63 E-value=2.1e+02 Score=21.94 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=12.5
Q ss_pred HHHHhccCChhHHHHHhcc
Q 037404 56 ISSLALCRQMGLAIKVFND 74 (605)
Q Consensus 56 ~~~~~~~g~~~~A~~~~~~ 74 (605)
+...++.|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3334566777777777766
No 327
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=26.91 E-value=3.8e+02 Score=24.79 Aligned_cols=223 Identities=11% Similarity=0.080 Sum_probs=0.0
Q ss_pred hHHHHHHHhccCChhHHHHHhcccCCCCcccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHhhcc---
Q 037404 52 APKLISSLALCRQMGLAIKVFNDIQDPDVHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFTYPFLLKACNGK--- 128 (605)
Q Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--- 128 (605)
...+|.-|...|+.++|...++++..|.....-.-.-.-....+-+.-.+....+... ...+..+-..+.+++...
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~-L~~~~ls~~~i~~gf~~lle~ 135 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSD-LCGTVMSTNDVEKSFDKLLKD 135 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHT-TTTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHh
Q ss_pred ---------CCHHHHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCCCChHHHHHHHhccCCCCeehHHHHHHHHHhCCCh
Q 037404 129 ---------NWFHLVQMIHALIYKCGYFGDIFVPNSLIDSYSKCGVVGVSLAKKLFMSMGERDIVSWNSMIAGLVKGGEL 199 (605)
Q Consensus 129 ---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~ 199 (605)
.-++..-.++..++..++-|-.+........-+..|..-...|..++.. ......+-+.+.-.|..
T Consensus 136 ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~-----~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 136 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSM-----SKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC--------------CCCCCCSS
T ss_pred hhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhc-----cchHHHHHHhcCCCCCC
Q ss_pred hHHHHHHhhcCCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCCh---hHHHHHHHHHHhcC--CHHHHHHHHhhCCCC
Q 037404 200 SEARRLFDEMPERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNI---VSWSTMVWGYSKDG--DMEMAKLLFDRMPAK 274 (605)
Q Consensus 200 ~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 274 (605)
....++-+++ ..++.-|...|+.++|.+.++++..|.. .+...+..++-+.+ ..+...+++..+...
T Consensus 211 ~~veelkkki--------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~ 282 (358)
T 3eiq_C 211 QPVNHLVKEI--------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 282 (358)
T ss_dssp SCHHHHHHHH--------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHH--------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Q ss_pred CcccHHHHHHHHHh
Q 037404 275 TLVPWTIIISGYAE 288 (605)
Q Consensus 275 ~~~~~~~l~~~~~~ 288 (605)
++.+-..+..++.+
T Consensus 283 glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 283 STITIDQMKRGYER 296 (358)
T ss_dssp TCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
No 328
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.48 E-value=2.5e+02 Score=22.60 Aligned_cols=18 Identities=6% Similarity=0.030 Sum_probs=10.0
Q ss_pred HHhcCCCChHHHHHHHhccC
Q 037404 160 YSKCGVVGVSLAKKLFMSMG 179 (605)
Q Consensus 160 ~~~~g~~~~~~a~~~~~~~~ 179 (605)
.+..| +.+....++..-.
T Consensus 12 A~~~g--~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQR--DTKKVKEILQDTT 29 (201)
T ss_dssp HHHTT--CHHHHHHHHTCTT
T ss_pred HHHhc--cHHHHHHHHHcCC
Confidence 34455 6666666665443
No 329
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=26.16 E-value=1.4e+02 Score=30.67 Aligned_cols=63 Identities=16% Similarity=0.068 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCC
Q 037404 464 LKEALRLVQSMPVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGD 529 (605)
Q Consensus 464 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 529 (605)
.+.|.++.+-|+ .........+.....|++.-|.+++..++..+|++..+...++++|.+.|.
T Consensus 436 ~~~a~~~v~~~g---g~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 436 EDSAGRYVEYMG---GAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 456677777775 233334455666788999999999999999999999988888888888774
No 330
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=25.05 E-value=2.4e+02 Score=24.70 Aligned_cols=144 Identities=13% Similarity=0.061 Sum_probs=69.2
Q ss_pred HHHhCCCchHHHHHHHHHHhCCC-CC---CcccHHHHHHHhhccCCHHHHHHHHHHHHHhCCCCCcc--hhhHHHHHHHh
Q 037404 89 ACVQNSLNAQAFRVFLDMQEKGV-FT---DNFTYPFLLKACNGKNWFHLVQMIHALIYKCGYFGDIF--VPNSLIDSYSK 162 (605)
Q Consensus 89 ~~~~~~~~~~a~~~~~~m~~~~~-~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 162 (605)
..+..|+.+-+ +.+.+.|. .+ |..-++.+..++........-.++...+.+.|..++.. .-.+.+...+.
T Consensus 117 ~A~~~g~~~~v----~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~ 192 (276)
T 4hbd_A 117 YSVSHANFPVV----QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVS 192 (276)
T ss_dssp HHHHTTCHHHH----HHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHCCCHHHH----HHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence 34566665433 33344443 22 33334445444433333334445555566666443332 12344455556
Q ss_pred cCCCChHHHHHHHhccCCCC---eehHHHHHHHHHhCCChhHHHHHHhh-cCCC---CcchHHHHHHHHHcCCChHHHHH
Q 037404 163 CGVVGVSLAKKLFMSMGERD---IVSWNSMIAGLVKGGELSEARRLFDE-MPER---DAVSWNTILDGYAKAGEMNLAFE 235 (605)
Q Consensus 163 ~g~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~ 235 (605)
.| +.+-+.-+++.-..++ ..-++.| ...+..|+.+-+.-+++. -..+ |.... +-+...+..|+.+-+.-
T Consensus 193 ~g--~~~~v~~Ll~~gad~n~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~-TpL~~A~~~g~~~iv~~ 268 (276)
T 4hbd_A 193 HG--RVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHKEIAGLLLAVPSCDISLTDRDGS-TALMVALDAGQSEIASM 268 (276)
T ss_dssp TT--CHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHTSTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHH
T ss_pred cC--CHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHhcCCCCCcCcCCCCC-CHHHHHHHcCCHHHHHH
Confidence 67 7777777776544332 2222333 334456776666666652 2222 22111 23344455677777766
Q ss_pred HHHhC
Q 037404 236 LFEKI 240 (605)
Q Consensus 236 ~~~~~ 240 (605)
+++.+
T Consensus 269 Ll~~~ 273 (276)
T 4hbd_A 269 LYSRM 273 (276)
T ss_dssp HHHHC
T ss_pred HHhcc
Confidence 66654
No 331
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.71 E-value=1e+02 Score=21.77 Aligned_cols=25 Identities=8% Similarity=0.181 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 037404 517 YTMLSNIFAATGDWNKVANVRLQMK 541 (605)
Q Consensus 517 ~~~l~~~~~~~g~~~~A~~~~~~~~ 541 (605)
+.-.++.+.+.|+|++|++..++..
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3344555555666666655554443
No 332
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.28 E-value=85 Score=23.71 Aligned_cols=8 Identities=0% Similarity=-0.612 Sum_probs=2.9
Q ss_pred HHHHHhCC
Q 037404 190 IAGLVKGG 197 (605)
Q Consensus 190 i~~~~~~g 197 (605)
+.++.+.|
T Consensus 63 ~~aL~~~~ 70 (131)
T 1te4_A 63 AWIIGNFQ 70 (131)
T ss_dssp HHHHGGGC
T ss_pred HHHHHhcC
Confidence 33333333
No 333
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=23.88 E-value=2.8e+02 Score=22.47 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=52.1
Q ss_pred HhccCChhHHHHHhcccCC-CC-cccHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc---HHHHHHHhh-ccCCHH
Q 037404 59 LALCRQMGLAIKVFNDIQD-PD-VHLYNTLIRACVQNSLNAQAFRVFLDMQEKGVFTDNFT---YPFLLKACN-GKNWFH 132 (605)
Q Consensus 59 ~~~~g~~~~A~~~~~~~~~-~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~-~~~~~~ 132 (605)
.++.|+++....+++.-.. .+ ..-+ +.+...+..|+.+.-.++.+.+++.|..++... .+.|.-++. ...+..
T Consensus 13 Aa~~g~~~~~~~l~~~~~~~~~~~~g~-T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~ 91 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEKGYEDKESVLKS-NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT 91 (186)
T ss_dssp HHHHSCHHHHHHHHHHSSSCHHHHHTT-THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHH
T ss_pred HHHcCCHHHHHHHHhcCcccccccCCC-CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchh
Confidence 3567888877777765331 11 1112 345555666776666777888888887765532 223332222 223344
Q ss_pred HHHHHHHHHHHhCCCCCcc
Q 037404 133 LVQMIHALIYKCGYFGDIF 151 (605)
Q Consensus 133 ~a~~~~~~~~~~~~~~~~~ 151 (605)
...++.+.+++.|..++..
T Consensus 92 ~~~~iv~~Ll~~Gadin~~ 110 (186)
T 3t8k_A 92 GTTELCKIFLEKGADITAL 110 (186)
T ss_dssp HHHHHHHHHHHTTCCSSSC
T ss_pred hHHHHHHHHHHCCCCCCcc
Confidence 4556777777888766543
No 334
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.73 E-value=2.6e+02 Score=21.80 Aligned_cols=62 Identities=13% Similarity=0.127 Sum_probs=38.3
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 300 DQMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 300 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
+.+.+.|++++..- ..++..+...+..-.|.++++.+.+.+...+..+...-++.+...|-+
T Consensus 16 ~~l~~~g~r~T~qR-~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQR-EEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHHH-HHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 33556676655433 334455555566778888888888777666776666667777766643
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.66 E-value=2.3e+02 Score=22.61 Aligned_cols=69 Identities=9% Similarity=0.085 Sum_probs=45.9
Q ss_pred HHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHc--CCCCChhHHHHHHHHHHhcCCh
Q 037404 293 KEAARLYDQ-MEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKY--RFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 293 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
+.+++-+.+ +.+.|++++..- ..++..+...+..-.|.++++.+.+. +...+..+...-++.+...|-+
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 444444443 455677775543 45566666777788899999988877 6666776666667777777743
No 336
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.30 E-value=2.9e+02 Score=22.21 Aligned_cols=48 Identities=4% Similarity=-0.099 Sum_probs=24.7
Q ss_pred HHHHHhccCChhHHHHHhcccCCC---CcccHHHHHHHHHhCCCchHHHHHH
Q 037404 55 LISSLALCRQMGLAIKVFNDIQDP---DVHLYNTLIRACVQNSLNAQAFRVF 103 (605)
Q Consensus 55 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~ 103 (605)
.+...++.|+.+-+..+++.-..+ +...++. +...+..|+.+-+..++
T Consensus 42 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 42 PLNIAVHNNDIEIAKALIDRGADINLQNSISDSP-YLYAGAQGRTEILAYML 92 (201)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH
Confidence 344445677777777777653332 2222333 33445566655544444
No 337
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.20 E-value=2.8e+02 Score=23.64 Aligned_cols=53 Identities=6% Similarity=-0.058 Sum_probs=29.7
Q ss_pred HHHhhcCCchHHHHHHHHHHHhCCCCCCcc-------hHHHHHHHh--ccCChhHHHHHhcc
Q 037404 22 QNLHKCKNLNQTKQLFAQIIKLDLQRDPYI-------APKLISSLA--LCRQMGLAIKVFND 74 (605)
Q Consensus 22 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~g~~~~A~~~~~~ 74 (605)
......|+.+....+.+.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 334455777777777777777776555332 233333321 45666655555543
No 338
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=22.99 E-value=3.3e+02 Score=23.11 Aligned_cols=28 Identities=4% Similarity=0.058 Sum_probs=15.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCC
Q 037404 87 IRACVQNSLNAQAFRVFLDMQEKGVFTD 114 (605)
Q Consensus 87 l~~~~~~~~~~~a~~~~~~m~~~~~~p~ 114 (605)
+...++.|+.+....+++.+.+.|..++
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~ 33 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLT 33 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcc
Confidence 3344556666666666666655554443
No 339
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.94 E-value=1.5e+02 Score=20.49 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=8.3
Q ss_pred HhcCChHHHHHHHHHHHh
Q 037404 525 AATGDWNKVANVRLQMKK 542 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~ 542 (605)
.+.|++++|..+|++..+
T Consensus 30 D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 344444444444444443
No 340
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.89 E-value=3.3e+02 Score=22.62 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=10.7
Q ss_pred HhCCChHHHHHHHHHHHHcCC
Q 037404 287 AEKGMAKEAARLYDQMEEAGL 307 (605)
Q Consensus 287 ~~~~~~~~a~~~~~~m~~~~~ 307 (605)
+..|+.+-+..+++.+.+.|.
T Consensus 162 ~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 162 ILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HTCSCHHHHHHHHHHHHHTTC
T ss_pred HHcCChHHHHHHHHHHHhcCC
Confidence 344555555555555555543
No 341
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.79 E-value=2e+02 Score=22.35 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=36.0
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCchHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 301 QMEEAGLKPDDGTLISILAACAESGLLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 301 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..+...-++.+...|-+
T Consensus 12 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 34556666554432 33344444455666777777777666666666666666667666644
No 342
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=22.33 E-value=2.7e+02 Score=21.50 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCc
Q 037404 279 WTIIISGYAEKGMAKEAARLYDQMEEAGLKPDDGTLISILAACAESGL 326 (605)
Q Consensus 279 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 326 (605)
-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 344455555555555666666666665555555555555554444443
No 343
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.25 E-value=2.8e+02 Score=21.62 Aligned_cols=62 Identities=13% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccC-chHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCCh
Q 037404 300 DQMEEAGLKPDDGTLISILAACAESG-LLGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSL 362 (605)
Q Consensus 300 ~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 362 (605)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..+...-++.+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 345667777665443 3445555555 6677888888888877777777766677777777644
No 344
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.09 E-value=3.6e+02 Score=24.65 Aligned_cols=140 Identities=11% Similarity=-0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCccc---HHHHHHHHHh-CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037404 249 STMVWGYSKDGDMEMAKLLFDRMPAKTLVP---WTIIISGYAE-KGMAKEAARLYDQMEEAGLKPDDGTLISILAACAES 324 (605)
Q Consensus 249 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 324 (605)
..++.-|...|+.++|.+.++++..+...+ ...+..++-+ ....+.+..++..+.+.|+-+.......+-..+...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~l 94 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILELA 94 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Q ss_pred Cc--------hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHHcCChHHH
Q 037404 325 GL--------LGLGMKVHASINKYRFKCNTNVCNALVDMYAKCGSLDNAMSVFNGMTKKDLVSWNAMLYGLAMHGQGEKA 396 (605)
Q Consensus 325 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 396 (605)
.| +.....+...+...|.-|-...+..+...+...|........ ++..+.+....+.+
T Consensus 95 ~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~--------------vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 95 EDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLE--------------ILGLLCKSMGPKKV 160 (339)
T ss_dssp HHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHH--------------HHHHHHHHHCHHHH
T ss_pred hHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHH--------------HHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 037404 397 LGLFSR 402 (605)
Q Consensus 397 ~~~~~~ 402 (605)
..+|.+
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 345
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.52 E-value=95 Score=23.43 Aligned_cols=52 Identities=8% Similarity=-0.114 Sum_probs=24.6
Q ss_pred CCCCcchHHHHHHHHHcCCChHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 037404 210 PERDAVSWNTILDGYAKAGEMNLAFELFEKIPHRNIVSWSTMVWGYSKDGDM 261 (605)
Q Consensus 210 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 261 (605)
..+|...-...+.++.+.|+.+....+.+.+..++..+-...+.++.+.|+.
T Consensus 52 ~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 52 SNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp GCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH
T ss_pred cCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 3445444445555555555533333333333344555555555555555543
No 346
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=21.34 E-value=61 Score=20.72 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=15.9
Q ss_pred CCchHHHHHHHHHHhCC-CCCCc
Q 037404 94 SLNAQAFRVFLDMQEKG-VFTDN 115 (605)
Q Consensus 94 ~~~~~a~~~~~~m~~~~-~~p~~ 115 (605)
-|++.|...|.++...| ++|+.
T Consensus 34 Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 34 WDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCHHHHHHHHHHHHHcCCCCHHH
Confidence 47888999998887654 55554
No 347
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=21.24 E-value=4.5e+02 Score=23.56 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=6.9
Q ss_pred HhcCCHHHHHHHHh
Q 037404 256 SKDGDMEMAKLLFD 269 (605)
Q Consensus 256 ~~~~~~~~a~~~~~ 269 (605)
+..|+.+-+..+++
T Consensus 176 ~~~g~~~~v~~LL~ 189 (337)
T 4g8k_A 176 AEKGHVEVLKILLD 189 (337)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHh
Confidence 34455555544443
No 348
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=21.23 E-value=89 Score=23.86 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=40.6
Q ss_pred cchhhHHHHHHHhhcCCchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCChh
Q 037404 13 KRRLLEEKLQNLHKCKNLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQMG 66 (605)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 66 (605)
|++. .++.+|...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 11 ~qR~--~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 11 RQRA--AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHH--HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHH--HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 4444 677788777777889999999998887777778888888888887543
No 349
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.13 E-value=80 Score=24.31 Aligned_cols=53 Identities=8% Similarity=0.147 Sum_probs=34.8
Q ss_pred CCcchhhHHHHHHHhhcC-CchHHHHHHHHHHHhCCCCCCcchHHHHHHHhccCCh
Q 037404 11 FSKRRLLEEKLQNLHKCK-NLNQTKQLFAQIIKLDLQRDPYIAPKLISSLALCRQM 65 (605)
Q Consensus 11 ~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 65 (605)
..|++. .++.+|.... ....|.++++.+.+.+...+..|.-.-++.+...|-+
T Consensus 16 ~T~qR~--~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 16 VTLPRV--KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp CCHHHH--HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred CCHHHH--HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 344555 6667776655 5667788888887777666666666667777766644
No 350
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=21.08 E-value=1.7e+02 Score=20.17 Aligned_cols=18 Identities=6% Similarity=-0.001 Sum_probs=9.3
Q ss_pred HhcCChHHHHHHHHHHHh
Q 037404 525 AATGDWNKVANVRLQMKK 542 (605)
Q Consensus 525 ~~~g~~~~A~~~~~~~~~ 542 (605)
.+.|++++|..+|++.++
T Consensus 22 D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 445555555555555444
No 351
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=20.90 E-value=1.7e+02 Score=19.89 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHhcccC--CCCcccHHHHHHHHHhCCCchHHHHHHHHH
Q 037404 69 IKVFNDIQ--DPDVHLYNTLIRACVQNSLNAQAFRVFLDM 106 (605)
Q Consensus 69 ~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 106 (605)
..++++++ .|++.||+-+...+-+..-..+++.+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45666666 578888887666544444445555555444
No 352
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.80 E-value=2.6e+02 Score=20.72 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=43.0
Q ss_pred HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037404 464 LKEALRLVQSM-PVEPNAIIWGTLLGACRKHNAVELAEEVLDCLIRLKGSDPGNYTMLSNIFAATGDWNKVANVRLQMKK 542 (605)
Q Consensus 464 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 542 (605)
+.+|+.-+++. ...+|......++..+... ++.+.++.+..++.....|..+........+.|-.++. +.+..|.+
T Consensus 4 ~~~al~~L~e~~~~~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~~~~s~rd~~r~a~~~glI~~~-~~w~~m~~ 80 (119)
T 1wty_A 4 LARAVERLKAALERPKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGLEARSPRAAIRGAFQVGLLPED-PFWLEMLE 80 (119)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHTSSCCC-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCcH-HHHHHHHH
Confidence 34444444443 2234555555555554433 55666666666654433566677777777777777665 45555554
Done!