BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037406
         (162 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score = 39.7 bits (91), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 14  INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSD 73
           + + Y +RE     KAG +   L+R      E V +FD D     D+L R + Y V++ D
Sbjct: 212 LGVVYSTRERNEHAKAGNMSAALERL---KGELVVVFDADHVPSRDFLARTVGYFVEDPD 268

Query: 74  IALVQ 78
           + LVQ
Sbjct: 269 LFLVQ 273


>pdb|4HB9|A Chain A, Crystal Structure Of A Putative Fad Containing
           Monooxygenase From Photorhabdus Luminescens Subsp.
           Laumondii Tto1 (Target Psi-012791)
          Length = 412

 Score = 29.3 bits (64), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 107 LRDAQEHETMLVQAL-------EELRQTLSRIKQQVFALFIEIVGLNLANLQNDVLRLCV 159
           LRDA     +L Q L       EEL + +S  +QQ  A   EIVG++L + QN V+   +
Sbjct: 335 LRDA----LLLTQKLASVASGHEELVKAISDYEQQXRAYANEIVGISLRSAQNAVIHFSI 390

Query: 160 VAL 162
             L
Sbjct: 391 PPL 393


>pdb|2Z87|A Chain A, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
           Galnac And Udp
 pdb|2Z87|B Chain B, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With Udp-
           Galnac And Udp
          Length = 624

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 14  INIRYESRENRTGYKAGALKE-GLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNS 72
           +NI+Y  R+   GY+  A++  GL+ +      YVAI D D    P +++  +  L  + 
Sbjct: 147 LNIKY-VRQKDYGYQLCAVRNLGLRAAKYN---YVAILDCDMAPNPLWVQSYMELLAVDD 202

Query: 73  DIALVQAR 80
           ++AL+  R
Sbjct: 203 NVALIGPR 210


>pdb|2Z86|A Chain A, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
 pdb|2Z86|B Chain B, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
 pdb|2Z86|C Chain C, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
 pdb|2Z86|D Chain D, Crystal Structure Of Chondroitin Polymerase From
           Escherichia Coli Strain K4 (K4cp) Complexed With
           Udp-Glcua And Udp
          Length = 625

 Score = 28.5 bits (62), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 14  INIRYESRENRTGYKAGALKE-GLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNS 72
           +NI+Y  R+   GY+  A++  GL+ +      YVAI D D    P +++  +  L  + 
Sbjct: 148 LNIKY-VRQKDYGYQLCAVRNLGLRAAKYN---YVAILDCDMAPNPLWVQSYMELLAVDD 203

Query: 73  DIALVQAR 80
           ++AL+  R
Sbjct: 204 NVALIGPR 211


>pdb|1G71|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna Primase
 pdb|1G71|B Chain B, Crystal Structure Of Pyrococcus Furiosus Dna Primase
          Length = 347

 Score = 26.6 bits (57), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 53  DFRLEPDYLRRAIPYLVQNSDIALVQAR----WR-----FAKEAKELTEARANNEAKAEL 103
           D R   DY+R   PY V +S       R    WR     F  +AK+L   R N+E     
Sbjct: 55  DIRDLEDYIRATSPYAVYSSVAFYENPREMEGWRGAELVFDIDAKDLPLKRCNHEPGTVC 114

Query: 104 ESRLRDAQE 112
              L DA+E
Sbjct: 115 PICLEDAKE 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,033,335
Number of Sequences: 62578
Number of extensions: 139180
Number of successful extensions: 433
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 18
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)