Query 037406
Match_columns 162
No_of_seqs 209 out of 1281
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:53:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037406.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037406hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04191 Glucan_BSP_ModH Glucan 99.8 5.7E-20 1.2E-24 150.8 11.5 83 13-96 66-148 (254)
2 PRK14583 hmsR N-glycosyltransf 99.8 5.2E-19 1.1E-23 154.6 11.1 137 3-154 119-257 (444)
3 PRK11498 bcsA cellulose syntha 99.8 6.2E-19 1.3E-23 164.6 10.0 136 6-155 306-446 (852)
4 cd06437 CESA_CaSu_A2 Cellulose 99.8 6.5E-18 1.4E-22 133.9 14.0 134 7-155 54-190 (232)
5 TIGR03030 CelA cellulose synth 99.8 1.5E-18 3.3E-23 160.0 11.0 138 4-155 193-335 (713)
6 PRK11204 N-glycosyltransferase 99.8 3.5E-18 7.5E-23 147.3 11.4 138 3-155 98-237 (420)
7 TIGR03111 glyc2_xrt_Gpos1 puta 99.7 1.3E-16 2.9E-21 139.4 13.5 137 4-154 96-242 (439)
8 COG1215 Glycosyltransferases, 99.7 3.1E-17 6.7E-22 140.7 8.9 138 3-155 99-242 (439)
9 cd06435 CESA_NdvC_like NdvC_li 99.7 9.1E-17 2E-21 127.0 10.9 139 5-155 46-186 (236)
10 cd06436 GlcNAc-1-P_transferase 99.7 7.8E-17 1.7E-21 125.2 9.7 129 11-153 47-191 (191)
11 PRK05454 glucosyltransferase M 99.7 2.6E-16 5.6E-21 144.7 12.7 89 6-95 181-272 (691)
12 cd06427 CESA_like_2 CESA_like_ 99.7 7.2E-16 1.6E-20 123.3 13.6 138 4-155 48-189 (241)
13 cd06421 CESA_CelA_like CESA_Ce 99.7 9.4E-16 2E-20 120.3 11.4 138 3-155 48-188 (234)
14 TIGR03472 HpnI hopanoid biosyn 99.6 1.6E-15 3.5E-20 129.9 12.2 137 3-155 85-230 (373)
15 cd06438 EpsO_like EpsO protein 99.6 1.9E-15 4.1E-20 116.1 11.0 118 23-154 60-181 (183)
16 cd06423 CESA_like CESA_like is 99.5 3.4E-14 7.4E-19 103.9 9.5 135 4-153 42-180 (180)
17 cd04195 GT2_AmsE_like GT2_AmsE 99.5 8.7E-14 1.9E-18 107.1 11.5 80 3-87 45-124 (201)
18 PF13641 Glyco_tranf_2_3: Glyc 99.5 6.7E-16 1.5E-20 121.3 -1.9 133 5-154 47-186 (228)
19 PF13506 Glyco_transf_21: Glyc 99.5 4E-14 8.7E-19 110.2 8.1 121 18-155 6-131 (175)
20 cd06434 GT2_HAS Hyaluronan syn 99.5 4.5E-13 9.8E-18 105.5 14.1 72 12-89 51-122 (235)
21 PRK14716 bacteriophage N4 adso 99.5 2E-13 4.3E-18 121.9 10.4 137 4-155 112-266 (504)
22 cd04192 GT_2_like_e Subfamily 99.5 2.9E-13 6.3E-18 105.4 10.1 122 11-148 52-176 (229)
23 cd04190 Chitin_synth_C C-termi 99.5 7.2E-14 1.6E-18 112.8 6.6 103 31-147 64-169 (244)
24 PLN02893 Cellulose synthase-li 99.5 1.5E-13 3.2E-18 126.4 8.5 76 13-89 263-348 (734)
25 cd06439 CESA_like_1 CESA_like_ 99.5 1.7E-12 3.8E-17 103.4 13.7 131 3-154 75-205 (251)
26 cd02520 Glucosylceramide_synth 99.4 3.4E-13 7.3E-18 104.7 7.1 73 4-80 46-122 (196)
27 PRK11234 nfrB bacteriophage N4 99.4 2.1E-12 4.6E-17 119.6 9.9 140 4-155 109-263 (727)
28 cd04184 GT2_RfbC_Mx_like Myxoc 99.3 3.1E-12 6.6E-17 98.4 8.0 77 3-83 47-123 (202)
29 cd04179 DPM_DPG-synthase_like 99.3 2.7E-11 5.8E-16 91.7 11.5 79 3-86 43-121 (185)
30 cd04187 DPM1_like_bac Bacteria 99.3 2.7E-11 5.8E-16 92.2 10.4 77 3-85 44-120 (181)
31 PRK15489 nfrB bacteriophage N4 99.3 2.5E-11 5.4E-16 112.0 11.4 137 4-154 117-270 (703)
32 cd04196 GT_2_like_d Subfamily 99.3 4.1E-11 8.8E-16 92.3 9.6 81 3-87 42-123 (214)
33 TIGR03469 HonB hopene-associat 99.2 1.6E-11 3.5E-16 105.7 7.6 77 3-83 85-172 (384)
34 cd06442 DPM1_like DPM1_like re 99.2 1.3E-10 2.7E-15 90.7 11.7 75 3-82 42-116 (224)
35 cd02525 Succinoglycan_BP_ExoA 99.2 9.6E-11 2.1E-15 92.2 9.8 76 3-84 46-121 (249)
36 cd02510 pp-GalNAc-T pp-GalNAc- 99.2 1.8E-11 3.9E-16 101.2 5.8 65 11-80 55-119 (299)
37 cd02526 GT2_RfbF_like RfbF is 99.2 1.8E-11 3.9E-16 96.4 5.0 67 12-82 45-117 (237)
38 cd06433 GT_2_WfgS_like WfgS an 99.2 1.1E-10 2.5E-15 88.4 9.1 78 4-88 43-120 (202)
39 PF13632 Glyco_trans_2_3: Glyc 99.2 4.3E-11 9.4E-16 92.2 5.2 98 46-155 1-101 (193)
40 PLN02726 dolichyl-phosphate be 99.2 6.4E-10 1.4E-14 89.2 12.1 75 3-82 55-131 (243)
41 cd04186 GT_2_like_c Subfamily 99.1 1.3E-10 2.7E-15 85.7 6.8 64 13-80 48-111 (166)
42 PF00535 Glycos_transf_2: Glyc 99.1 3E-10 6.4E-15 83.0 7.7 78 3-85 42-119 (169)
43 cd06420 GT2_Chondriotin_Pol_N 99.1 4E-10 8.7E-15 85.2 8.3 74 3-81 41-115 (182)
44 TIGR01556 rhamnosyltran L-rham 99.0 1.4E-09 3.1E-14 88.8 9.3 76 5-81 36-112 (281)
45 PF10111 Glyco_tranf_2_2: Glyc 99.0 1.4E-09 3E-14 90.0 9.1 79 4-87 50-134 (281)
46 cd04188 DPG_synthase DPG_synth 99.0 1.1E-08 2.3E-13 79.9 13.2 76 3-83 45-121 (211)
47 cd06913 beta3GnTL1_like Beta 1 99.0 7.7E-09 1.7E-13 81.1 11.5 73 4-81 43-121 (219)
48 PRK10073 putative glycosyl tra 98.9 5.8E-09 1.2E-13 88.4 9.9 72 3-80 50-121 (328)
49 cd04185 GT_2_like_b Subfamily 98.9 9.1E-09 2E-13 79.4 9.1 78 3-83 41-118 (202)
50 PLN02189 cellulose synthase 98.9 3.1E-09 6.7E-14 100.6 7.3 74 14-88 498-581 (1040)
51 PLN02195 cellulose synthase A 98.9 3E-09 6.6E-14 100.2 7.0 75 13-88 418-502 (977)
52 cd02522 GT_2_like_a GT_2_like_ 98.9 9.7E-09 2.1E-13 79.9 8.4 114 14-154 49-163 (221)
53 PRK10018 putative glycosyl tra 98.9 1.2E-08 2.6E-13 84.9 9.4 73 5-81 49-123 (279)
54 PTZ00260 dolichyl-phosphate be 98.8 5.9E-08 1.3E-12 82.5 12.0 76 4-83 123-204 (333)
55 PLN02638 cellulose synthase A 98.8 7.3E-09 1.6E-13 98.5 6.9 75 13-88 515-599 (1079)
56 COG2943 MdoH Membrane glycosyl 98.8 1E-08 2.2E-13 91.5 6.5 88 6-95 205-292 (736)
57 PRK10714 undecaprenyl phosphat 98.8 1.8E-07 3.9E-12 79.2 12.7 72 4-81 54-126 (325)
58 cd00761 Glyco_tranf_GTA_type G 98.7 2.3E-07 4.9E-12 65.9 9.6 73 4-80 42-114 (156)
59 PLN02248 cellulose synthase-li 98.6 3.5E-08 7.7E-13 94.0 5.9 75 13-88 584-667 (1135)
60 COG1216 Predicted glycosyltran 98.6 9.8E-08 2.1E-12 79.6 6.1 72 13-85 55-126 (305)
61 PLN02436 cellulose synthase A 98.5 1.6E-07 3.4E-12 89.5 7.1 75 13-88 531-615 (1094)
62 PRK13915 putative glucosyl-3-p 98.5 2.1E-07 4.5E-12 78.4 6.9 55 22-80 98-153 (306)
63 PRK10063 putative glycosyl tra 98.5 1E-06 2.2E-11 71.8 9.8 70 4-79 49-118 (248)
64 PF03552 Cellulose_synt: Cellu 98.5 2E-07 4.4E-12 86.0 5.9 75 13-88 165-249 (720)
65 PLN02400 cellulose synthase 98.4 4.9E-07 1.1E-11 86.3 6.6 75 13-88 522-606 (1085)
66 cd02511 Beta4Glucosyltransfera 98.3 3.4E-06 7.3E-11 67.2 8.8 60 14-78 47-106 (229)
67 PLN02190 cellulose synthase-li 98.3 1.7E-06 3.7E-11 80.2 6.9 72 13-85 251-333 (756)
68 PLN02915 cellulose synthase A 98.2 1.5E-06 3.2E-11 82.9 5.6 75 13-88 453-537 (1044)
69 PF03142 Chitin_synth_2: Chiti 98.0 4.3E-06 9.3E-11 75.4 3.3 85 42-126 200-286 (527)
70 KOG2978 Dolichol-phosphate man 97.9 8.4E-05 1.8E-09 59.3 8.8 73 4-81 51-125 (238)
71 PF13712 Glyco_tranf_2_5: Glyc 97.8 4.5E-05 9.7E-10 61.4 6.5 60 15-78 30-90 (217)
72 KOG2547 Ceramide glucosyltrans 97.7 0.00015 3.2E-09 62.9 8.3 83 4-89 130-216 (431)
73 KOG2571 Chitin synthase/hyalur 97.7 6E-05 1.3E-09 71.1 5.5 96 28-126 426-523 (862)
74 COG0463 WcaA Glycosyltransfera 97.5 0.00062 1.4E-08 48.8 7.6 61 3-68 47-107 (291)
75 cd02514 GT13_GLCNAC-TI GT13_GL 97.5 0.00073 1.6E-08 58.0 8.7 47 31-80 88-137 (334)
76 KOG3736 Polypeptide N-acetylga 95.4 0.033 7.2E-07 51.1 5.9 78 6-88 193-270 (578)
77 KOG2977 Glycosyltransferase [G 95.1 0.072 1.6E-06 45.0 6.5 61 4-68 120-185 (323)
78 KOG3737 Predicted polypeptide 93.8 0.066 1.4E-06 47.3 3.5 56 15-74 216-271 (603)
79 KOG3738 Predicted polypeptide 93.7 0.12 2.7E-06 45.7 5.0 77 6-88 172-248 (559)
80 TIGR03310 matur_ygfJ molybdenu 93.2 0.81 1.8E-05 34.6 8.5 57 15-75 63-122 (188)
81 cd04182 GT_2_like_f GT_2_like_ 92.1 1.3 2.8E-05 33.1 8.2 56 16-73 64-121 (186)
82 cd02540 GT2_GlmU_N_bac N-termi 92.0 1.8 3.8E-05 33.8 9.1 55 14-70 62-117 (229)
83 PF11316 Rhamno_transf: Putati 91.5 1.9 4.1E-05 35.2 9.0 64 3-68 74-139 (234)
84 PF05679 CHGN: Chondroitin N-a 90.7 0.99 2.2E-05 40.7 7.3 64 2-67 300-365 (499)
85 cd02503 MobA MobA catalyzes th 89.1 2.4 5.1E-05 32.0 7.3 49 16-68 59-109 (181)
86 TIGR02665 molyb_mobA molybdopt 88.2 4.1 8.8E-05 30.8 8.1 42 25-70 73-115 (186)
87 cd04181 NTP_transferase NTP_tr 87.9 3.5 7.5E-05 31.6 7.6 50 14-68 70-119 (217)
88 PRK00317 mobA molybdopterin-gu 87.0 3.6 7.9E-05 31.5 7.2 43 28-73 76-119 (193)
89 PF03452 Anp1: Anp1; InterPro 86.8 1.2 2.6E-05 37.3 4.6 39 29-67 128-167 (269)
90 PF13896 Glyco_transf_49: Glyc 86.6 0.78 1.7E-05 39.0 3.5 52 30-84 117-171 (317)
91 PRK14355 glmU bifunctional N-a 86.3 5.9 0.00013 34.8 9.0 56 13-70 67-123 (459)
92 PRK14353 glmU bifunctional N-a 86.0 5.8 0.00013 34.5 8.8 58 15-74 72-130 (446)
93 PF12804 NTP_transf_3: MobA-li 85.6 6.4 0.00014 28.9 7.7 63 14-78 58-122 (160)
94 cd06915 NTP_transferase_WcbM_l 85.2 5.7 0.00012 30.5 7.6 49 16-69 72-120 (223)
95 PRK02726 molybdopterin-guanine 84.7 6 0.00013 30.8 7.6 51 15-69 67-119 (200)
96 cd02517 CMP-KDO-Synthetase CMP 84.0 8.3 0.00018 30.4 8.2 45 28-74 76-121 (239)
97 cd06422 NTP_transferase_like_1 83.8 6.4 0.00014 30.6 7.4 51 14-68 70-121 (221)
98 COG4092 Predicted glycosyltran 83.4 3.7 7.9E-05 34.8 6.0 85 4-89 52-144 (346)
99 TIGR03202 pucB xanthine dehydr 82.9 14 0.00031 28.0 8.9 46 28-73 80-126 (190)
100 COG1213 Predicted sugar nucleo 82.5 2.6 5.6E-05 34.7 4.7 70 4-79 59-130 (239)
101 cd04189 G1P_TT_long G1P_TT_lon 81.6 9.8 0.00021 29.8 7.7 59 14-77 72-131 (236)
102 TIGR01173 glmU UDP-N-acetylglu 79.9 16 0.00036 31.5 9.1 60 15-78 65-125 (451)
103 PF04724 Glyco_transf_17: Glyc 79.7 17 0.00038 31.5 9.1 79 6-85 130-219 (356)
104 PRK13368 3-deoxy-manno-octulos 79.6 15 0.00033 28.8 8.2 38 32-72 80-118 (238)
105 cd04183 GT2_BcE_like GT2_BcbE_ 79.5 15 0.00033 28.7 8.1 51 14-68 70-122 (231)
106 PRK14360 glmU bifunctional N-a 79.0 17 0.00037 31.6 9.0 56 14-71 66-122 (450)
107 PRK13385 2-C-methyl-D-erythrit 77.6 22 0.00048 28.0 8.6 42 29-72 85-127 (230)
108 PF03071 GNT-I: GNT-I family; 77.3 3.9 8.4E-05 36.5 4.5 37 43-79 191-230 (434)
109 cd02516 CDP-ME_synthetase CDP- 75.2 28 0.00062 26.7 8.5 46 28-73 80-126 (218)
110 PLN02917 CMP-KDO synthetase 74.1 30 0.00065 28.9 8.8 60 15-76 108-169 (293)
111 PRK14352 glmU bifunctional N-a 73.6 29 0.00063 30.7 9.1 56 15-71 71-127 (482)
112 PF00483 NTP_transferase: Nucl 73.5 7.5 0.00016 30.6 4.9 51 15-70 74-128 (248)
113 PRK05450 3-deoxy-manno-octulos 72.3 36 0.00079 26.8 8.6 29 43-71 90-119 (245)
114 PRK14356 glmU bifunctional N-a 72.2 29 0.00062 30.3 8.6 59 15-75 70-129 (456)
115 TIGR00466 kdsB 3-deoxy-D-manno 70.9 39 0.00085 27.1 8.6 35 43-78 87-122 (238)
116 cd02523 PC_cytidylyltransferas 70.8 20 0.00043 28.0 6.7 48 14-66 66-115 (229)
117 COG0746 MobA Molybdopterin-gua 70.5 40 0.00086 26.5 8.3 42 28-72 74-116 (192)
118 COG1208 GCD1 Nucleoside-diphos 68.8 24 0.00051 30.4 7.2 54 13-71 72-125 (358)
119 PRK00155 ispD 2-C-methyl-D-ery 68.4 55 0.0012 25.5 9.4 44 28-73 82-126 (227)
120 COG1198 PriA Primosomal protei 67.6 61 0.0013 31.0 10.1 96 2-104 496-621 (730)
121 PRK14489 putative bifunctional 67.6 35 0.00075 29.4 8.0 39 28-69 80-119 (366)
122 PF01644 Chitin_synth_1: Chiti 67.3 9.3 0.0002 29.7 4.0 34 32-68 130-163 (163)
123 PF13704 Glyco_tranf_2_4: Glyc 66.6 19 0.0004 24.2 5.1 42 14-57 41-85 (97)
124 TIGR02623 G1P_cyt_trans glucos 66.5 28 0.0006 28.1 6.9 48 25-76 103-150 (254)
125 TIGR03552 F420_cofC 2-phospho- 65.8 41 0.0009 25.6 7.5 52 15-69 65-117 (195)
126 cd06425 M1P_guanylylT_B_like_N 63.9 25 0.00054 27.6 6.0 44 23-70 82-126 (233)
127 cd00899 b4GalT Beta-4-Galactos 63.6 13 0.00028 30.2 4.3 49 15-63 36-86 (219)
128 cd02538 G1P_TT_short G1P_TT_sh 63.3 41 0.00089 26.5 7.2 58 15-76 74-132 (240)
129 cd02509 GDP-M1P_Guanylyltransf 61.9 44 0.00096 27.4 7.3 44 13-57 72-116 (274)
130 PLN03153 hypothetical protein; 61.7 48 0.001 30.5 7.9 28 41-68 208-235 (537)
131 PF03214 RGP: Reversibly glyco 61.7 4 8.7E-05 35.3 1.1 38 30-70 81-118 (348)
132 TIGR01208 rmlA_long glucose-1- 61.2 48 0.001 27.9 7.6 51 14-69 72-122 (353)
133 COG2068 Uncharacterized MobA-r 60.7 70 0.0015 25.7 8.0 56 14-71 68-125 (199)
134 PRK14354 glmU bifunctional N-a 60.5 71 0.0015 27.7 8.8 52 16-69 67-119 (458)
135 PRK09382 ispDF bifunctional 2- 60.4 80 0.0017 27.5 9.0 39 28-69 83-122 (378)
136 cd02518 GT2_SpsF SpsF is a gly 57.9 77 0.0017 24.8 7.9 35 33-70 80-115 (233)
137 PF01697 Glyco_transf_92: Glyc 57.9 60 0.0013 26.0 7.4 51 29-80 90-146 (285)
138 cd02524 G1P_cytidylyltransfera 57.4 33 0.00071 27.4 5.7 38 28-69 104-142 (253)
139 TIGR00453 ispD 2-C-methyl-D-er 56.2 46 0.00099 25.7 6.2 43 29-73 78-121 (217)
140 PRK14358 glmU bifunctional N-a 55.5 79 0.0017 28.1 8.3 55 15-71 72-127 (481)
141 PRK14357 glmU bifunctional N-a 54.9 68 0.0015 27.8 7.7 52 16-70 64-116 (448)
142 cd06428 M1P_guanylylT_A_like_N 53.7 90 0.0019 24.9 7.7 56 13-70 73-128 (257)
143 PF06415 iPGM_N: BPG-independe 53.2 1.2E+02 0.0027 24.6 9.1 96 2-99 16-123 (223)
144 PRK09451 glmU bifunctional N-a 51.9 1.3E+02 0.0028 26.2 9.0 51 15-68 70-121 (456)
145 TIGR03584 PseF pseudaminic aci 50.9 1.1E+02 0.0025 24.2 7.8 43 28-70 78-122 (222)
146 cd06426 NTP_transferase_like_2 48.5 92 0.002 23.8 6.9 58 14-77 70-128 (220)
147 PF09488 Osmo_MPGsynth: Mannos 47.5 45 0.00098 29.3 5.2 58 28-86 144-206 (381)
148 PF09258 Glyco_transf_64: Glyc 46.5 22 0.00048 29.0 3.1 31 43-73 75-105 (247)
149 PRK14359 glmU bifunctional N-a 44.5 1.2E+02 0.0025 26.1 7.4 49 12-66 65-116 (430)
150 cd02513 CMP-NeuAc_Synthase CMP 44.4 1.3E+02 0.0029 22.9 7.2 43 28-70 80-125 (223)
151 cd02541 UGPase_prokaryotic Pro 43.2 85 0.0018 25.1 6.1 52 15-70 94-147 (267)
152 PRK15480 glucose-1-phosphate t 43.2 84 0.0018 26.2 6.2 52 13-68 75-126 (292)
153 PLN03180 reversibly glycosylat 42.3 27 0.00058 30.3 3.1 35 31-68 84-125 (346)
154 PRK14503 mannosyl-3-phosphogly 40.4 26 0.00057 30.8 2.7 56 28-84 145-205 (393)
155 TIGR01207 rmlA glucose-1-phosp 38.2 86 0.0019 26.0 5.5 52 13-68 71-122 (286)
156 TIGR02460 osmo_MPGsynth mannos 37.8 53 0.0012 28.8 4.2 57 28-84 144-204 (381)
157 PRK13236 nitrogenase reductase 37.7 67 0.0015 26.7 4.8 41 14-56 4-46 (296)
158 PF05045 RgpF: Rhamnan synthes 37.7 52 0.0011 29.8 4.3 67 14-81 319-406 (498)
159 PHA02688 ORF059 IMV protein VP 37.5 57 0.0012 28.1 4.3 44 42-86 115-159 (323)
160 KOG3588 Chondroitin synthase 1 37.2 1E+02 0.0023 27.5 5.9 60 4-67 277-337 (494)
161 KOG1460 GDP-mannose pyrophosph 36.7 35 0.00075 29.6 2.8 59 5-64 68-130 (407)
162 COG1210 GalU UDP-glucose pyrop 36.5 2.7E+02 0.0058 23.7 8.1 62 5-70 86-151 (291)
163 PF03314 DUF273: Protein of un 36.4 29 0.00064 28.3 2.3 36 40-79 38-74 (222)
164 KOG2859 DNA repair protein, me 34.7 1.9E+02 0.0041 24.2 6.7 56 15-71 39-99 (293)
165 TIGR01105 galF UTP-glucose-1-p 33.9 2.4E+02 0.0052 23.5 7.5 52 14-69 97-155 (297)
166 PF12516 DUF3719: Protein of u 32.7 50 0.0011 21.9 2.6 20 2-21 14-33 (68)
167 PF06718 DUF1203: Protein of u 32.4 62 0.0014 23.7 3.3 37 40-80 68-104 (117)
168 TIGR01099 galU UTP-glucose-1-p 32.2 1.4E+02 0.003 23.6 5.7 51 15-69 94-146 (260)
169 PF03213 Pox_P35: Poxvirus P35 30.5 82 0.0018 27.2 4.1 65 41-106 116-185 (325)
170 PRK05580 primosome assembly pr 30.0 4.5E+02 0.0098 24.7 9.3 14 44-57 499-512 (679)
171 PF13733 Glyco_transf_7N: N-te 29.0 51 0.0011 24.9 2.4 46 15-60 81-128 (136)
172 PRK14502 bifunctional mannosyl 28.9 88 0.0019 29.8 4.4 57 28-84 149-209 (694)
173 PF02348 CTP_transf_3: Cytidyl 28.9 2.6E+02 0.0057 21.2 7.6 59 16-74 61-120 (217)
174 PRK05434 phosphoglyceromutase; 28.1 4.7E+02 0.01 23.9 10.4 96 3-99 99-205 (507)
175 PRK00576 molybdopterin-guanine 27.6 2.6E+02 0.0057 20.8 7.0 44 28-71 59-103 (178)
176 TIGR02247 HAD-1A3-hyp Epoxide 26.9 2.8E+02 0.0061 21.0 6.9 62 3-68 100-165 (211)
177 COG1209 RfbA dTDP-glucose pyro 26.7 2.6E+02 0.0056 23.8 6.4 52 13-70 72-124 (286)
178 PRK10122 GalU regulator GalF; 26.4 2.7E+02 0.0058 23.1 6.6 52 14-69 97-155 (297)
179 PF08776 VASP_tetra: VASP tetr 26.1 1.3E+02 0.0028 18.0 3.3 20 119-138 11-30 (40)
180 cd04198 eIF-2B_gamma_N The N-t 25.6 3.2E+02 0.0068 21.1 8.2 50 23-78 85-135 (214)
181 COG1671 Uncharacterized protei 25.5 1.3E+02 0.0028 23.1 4.1 34 48-83 4-37 (150)
182 PF02434 Fringe: Fringe-like; 25.5 1.1E+02 0.0023 25.0 3.9 36 43-80 86-121 (252)
183 TIGR03029 EpsG chain length de 24.8 2.2E+02 0.0047 22.9 5.6 41 14-56 103-144 (274)
184 COG1184 GCD2 Translation initi 24.6 2.8E+02 0.0061 23.7 6.4 71 2-86 132-202 (301)
185 PF11051 Mannosyl_trans3: Mann 24.3 72 0.0016 26.2 2.7 31 32-63 80-112 (271)
186 PF05637 Glyco_transf_34: gala 24.2 68 0.0015 26.0 2.5 28 28-57 63-90 (239)
187 KOG1413 N-acetylglucosaminyltr 23.8 1.7E+02 0.0037 25.9 4.9 46 31-79 158-206 (411)
188 TIGR00140 hupD hydrogenase exp 23.6 2.1E+02 0.0046 20.5 4.9 48 5-61 3-54 (134)
189 PF06306 CgtA: Beta-1,4-N-acet 23.5 1.4E+02 0.003 26.0 4.3 60 3-64 128-196 (347)
190 KOG0384 Chromodomain-helicase 23.5 99 0.0021 31.5 3.8 24 35-61 765-788 (1373)
191 COG1282 PntB NAD/NADP transhyd 23.0 85 0.0018 27.9 2.9 37 2-39 328-364 (463)
192 PF02364 Glucan_synthase: 1,3- 23.0 60 0.0013 31.4 2.2 69 27-98 275-364 (817)
193 KOG3765 Predicted glycosyltran 22.9 1E+02 0.0022 27.2 3.5 32 30-64 181-212 (386)
194 PF01762 Galactosyl_T: Galacto 22.4 67 0.0015 24.6 2.1 37 30-68 69-105 (195)
195 cd02508 ADP_Glucose_PP ADP-glu 22.0 3.6E+02 0.0077 20.4 6.3 50 25-76 93-143 (200)
196 PRK13849 putative crown gall t 21.4 1.8E+02 0.0038 23.3 4.4 28 28-57 15-43 (231)
197 TIGR01307 pgm_bpd_ind 2,3-bisp 21.4 6.4E+02 0.014 23.1 11.3 96 3-99 95-201 (501)
198 TIGR01007 eps_fam capsular exo 21.2 3.3E+02 0.0072 20.7 5.8 27 28-56 31-58 (204)
No 1
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.83 E-value=5.7e-20 Score=150.79 Aligned_cols=83 Identities=19% Similarity=0.277 Sum_probs=74.4
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHH
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTE 92 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~ 92 (162)
.++++|++++++.|.|+|++|.++... ..++|||+++|||++++||+|++++++|..||++|+||+++.+.|.++.+++
T Consensus 66 ~~~v~~~~r~~~~g~Kag~l~~~~~~~-~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~ 144 (254)
T cd04191 66 QGRIYYRRRRENTGRKAGNIADFCRRW-GSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFAR 144 (254)
T ss_pred CCcEEEEEcCCCCCccHHHHHHHHHHh-CCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHH
Confidence 678999999999999999999999871 2389999999999999999999999999779999999999999998866777
Q ss_pred HHHH
Q 037406 93 ARAN 96 (162)
Q Consensus 93 ~~~~ 96 (162)
.+..
T Consensus 145 ~~~~ 148 (254)
T cd04191 145 LQQF 148 (254)
T ss_pred HHHH
Confidence 7653
No 2
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.79 E-value=5.2e-19 Score=154.60 Aligned_cols=137 Identities=16% Similarity=0.177 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++.++++++++++.+++.| |++|+|.|++.+ ++||++++|||++++||+|++++.+|.++|++|+||++..
T Consensus 119 ~~~~~~~~~~~~~v~vv~~~~n~G-ka~AlN~gl~~a---~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~ 194 (444)
T PRK14583 119 AQVLDALLAEDPRLRVIHLAHNQG-KAIALRMGAAAA---RSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPR 194 (444)
T ss_pred HHHHHHHHHhCCCEEEEEeCCCCC-HHHHHHHHHHhC---CCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccce
Confidence 356778888888999998877777 999999999999 9999999999999999999999999988999999999988
Q ss_pred eecCCccHHHHHHHHHHHHHHhhhhcccccCCchh--HHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 037406 83 FAKEAKELTEARANNEAKAELESRLRDAQEHETML--VQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDV 154 (162)
Q Consensus 83 ~~N~~~~l~~~~~~~ey~~~~~~~~~~ai~~g~m~--~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~ 154 (162)
..|.++.+.+.+.. +|...+....+.....|.+. .|+...+||+ ++.+.|||++++++||.
T Consensus 195 ~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~----------al~~vGg~~~~~i~ED~ 257 (444)
T PRK14583 195 IRTRSTLIGRVQVG-EFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRR----------ALADVGYWSPDMITEDI 257 (444)
T ss_pred ecCCCcchhhHHHH-HHHHHHHHHHHHHHHhCCceEecCceeEEEHH----------HHHHcCCCCCCcccccH
Confidence 88776556655543 55554433211111122222 2777788888 88899999999999997
No 3
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.78 E-value=6.2e-19 Score=164.57 Aligned_cols=136 Identities=21% Similarity=0.356 Sum_probs=99.4
Q ss_pred HHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeec
Q 037406 6 CQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAK 85 (162)
Q Consensus 6 v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N 85 (162)
.++++++ .+++|+++++|.|+||||+|.|++++ +||||+++|||++|+||+|++++++|.+||++|+||+++.+.|
T Consensus 306 t~~la~~-~~v~yI~R~~n~~gKAGnLN~aL~~a---~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n 381 (852)
T PRK11498 306 FRQFAQE-VGVKYIARPTHEHAKAGNINNALKYA---KGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFS 381 (852)
T ss_pred HHHHHHH-CCcEEEEeCCCCcchHHHHHHHHHhC---CCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccC
Confidence 3444443 46999999888888999999999999 9999999999999999999999999878999999999998888
Q ss_pred CCc---cHHHHH-HHHHHHHHHhhhhc-ccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 86 EAK---ELTEAR-ANNEAKAELESRLR-DAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 86 ~~~---~l~~~~-~~~ey~~~~~~~~~-~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
.+. ++.... ...|.+.++..... +.....+.+.|+-..+||+ ++.++|||+++++|||.-
T Consensus 382 ~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRRe----------aLeeVGGfd~~titED~d 446 (852)
T PRK11498 382 PDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRK----------PLDEIGGIAVETVTEDAH 446 (852)
T ss_pred CchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHH----------HHHHhcCCCCCccCccHH
Confidence 754 222211 11122222221100 0011122233666678888 889999999999999983
No 4
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.78 E-value=6.5e-18 Score=133.93 Aligned_cols=134 Identities=33% Similarity=0.533 Sum_probs=96.4
Q ss_pred HHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecC
Q 037406 7 QRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKE 86 (162)
Q Consensus 7 ~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~ 86 (162)
.++...+++++++.++++.|+|++|+|.|++.+ +||||+++|||++++|+||+++...+ .+|++++|++++.+.|.
T Consensus 54 ~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a---~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~~~~~~~~ 129 (232)
T cd06437 54 EEYAAQGVNIKHVRRADRTGYKAGALAEGMKVA---KGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRWGHINA 129 (232)
T ss_pred HHHhhcCCceEEEECCCCCCCchHHHHHHHHhC---CCCEEEEEcCCCCCChHHHHHhhhhh-cCCCeEEEecceeeEcC
Confidence 334344678888888777888999999999999 99999999999999999999988888 79999999999888887
Q ss_pred CccH-HHHHHHHHHHHHHhhhhcccccCCch--hHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 87 AKEL-TEARANNEAKAELESRLRDAQEHETM--LVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 87 ~~~l-~~~~~~~ey~~~~~~~~~~ai~~g~m--~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
..++ .+.+. ..+...+..........+.. +.|+-..+||+ ++.+.|||.+.+..||+.
T Consensus 130 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~----------~~~~vgg~~~~~~~ED~~ 190 (232)
T cd06437 130 NYSLLTRVQA-MSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKE----------CIEDAGGWNHDTLTEDLD 190 (232)
T ss_pred CCchhhHhhh-hhHHhhhhHhHhhHhhcCCeEEeccchhhhhHH----------HHHHhCCCCCCcchhhHH
Confidence 6664 33332 12221111110000001111 12444468888 888999999999999963
No 5
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.77 E-value=1.5e-18 Score=159.97 Aligned_cols=138 Identities=23% Similarity=0.339 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceee
Q 037406 4 QECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRF 83 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~ 83 (162)
+.+++++++ .+++|+++++|.|+|+||+|.|++++ +||||+++|||++|+||+|++++++|.+||++++||+++.+
T Consensus 193 ~~~~~l~~~-~~v~yi~r~~n~~~KAgnLN~al~~a---~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f 268 (713)
T TIGR03030 193 EELKEFCRK-LGVNYITRPRNVHAKAGNINNALKHT---DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFF 268 (713)
T ss_pred HHHHHHHHH-cCcEEEECCCCCCCChHHHHHHHHhc---CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeec
Confidence 345666654 57999999988888999999999999 99999999999999999999999999889999999999988
Q ss_pred ecCCc---cHHHH-HHHHHHHHHHhhhhc-ccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 84 AKEAK---ELTEA-RANNEAKAELESRLR-DAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 84 ~N~~~---~l~~~-~~~~ey~~~~~~~~~-~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
.|++. ++... ....+...++..... .....++.+.|+-..+||+ ++.++|||++++++||..
T Consensus 269 ~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~----------al~~iGGf~~~~vtED~~ 335 (713)
T TIGR03030 269 VSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRRE----------ALDEIGGIAGETVTEDAE 335 (713)
T ss_pred cCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHH----------HHHHcCCCCCCCcCcHHH
Confidence 87653 22211 111222222221100 0011122223444557888 888999999999999974
No 6
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.76 E-value=3.5e-18 Score=147.27 Aligned_cols=138 Identities=19% Similarity=0.216 Sum_probs=106.1
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.+.++++.++++++++++.++|.| |++|+|.|++.+ ++||++++|||++++||+|++++..|+++|++++|+++..
T Consensus 98 ~~~l~~~~~~~~~v~~i~~~~n~G-ka~aln~g~~~a---~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~ 173 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIHLAENQG-KANALNTGAAAA---RSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPR 173 (420)
T ss_pred HHHHHHHHHhCCcEEEEEcCCCCC-HHHHHHHHHHHc---CCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCce
Confidence 456778888889999998777777 999999999999 9999999999999999999999999988999999999988
Q ss_pred eecCCccHHHHHHHHHHHHHHhhhhcccccCCch--hHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 83 FAKEAKELTEARANNEAKAELESRLRDAQEHETM--LVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 83 ~~N~~~~l~~~~~~~ey~~~~~~~~~~ai~~g~m--~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
..|..+.+.+.|. .+|...+....+.....|.. +.|+...+|++ ++.+.|||++++++||.-
T Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~----------~l~~vgg~~~~~~~ED~~ 237 (420)
T PRK11204 174 IRNRSTLLGRIQV-GEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKS----------ALHEVGYWSTDMITEDID 237 (420)
T ss_pred eccchhHHHHHHH-HHHHHhhhHHHHHHHHhCCceEecceeeeeeHH----------HHHHhCCCCCCcccchHH
Confidence 8776654555443 34443322110000111221 22667778888 888999999999999974
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.71 E-value=1.3e-16 Score=139.42 Aligned_cols=137 Identities=19% Similarity=0.155 Sum_probs=97.4
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceee
Q 037406 4 QECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRF 83 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~ 83 (162)
+++++++++++++++++.+++.| |++|+|.|++.+ ++|||+++|+|++++||+|+++++.|.++|++++|+|.+..
T Consensus 96 ~il~~~~~~~~~v~v~~~~~~~G-ka~AlN~gl~~s---~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~ 171 (439)
T TIGR03111 96 QVFCRAQNEFPGLSLRYMNSDQG-KAKALNAAIYNS---IGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT 171 (439)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCC-HHHHHHHHHHHc---cCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec
Confidence 45667777788888877766666 999999999999 99999999999999999999999999879999999987643
Q ss_pred ecC----Ccc----HHHHHHHHHHHHHHhhh-hccc-ccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhH
Q 037406 84 AKE----AKE----LTEARANNEAKAELESR-LRDA-QEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQND 153 (162)
Q Consensus 84 ~N~----~~~----l~~~~~~~ey~~~~~~~-~~~a-i~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d 153 (162)
... ... +.+.....+|...+..+ .... ...-..+.|+..++||+ ++.+.|||++++++||
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~----------~l~~vggf~~~~i~ED 241 (439)
T TIGR03111 172 DKELIEKTKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRE----------TILKTQLYNSETVGED 241 (439)
T ss_pred CchhhhhhcchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHH----------HHHHhCCCCCCCcCcc
Confidence 211 001 11111123332222111 1011 11111233888999999 8889999999999999
Q ss_pred H
Q 037406 154 V 154 (162)
Q Consensus 154 ~ 154 (162)
.
T Consensus 242 ~ 242 (439)
T TIGR03111 242 T 242 (439)
T ss_pred H
Confidence 6
No 8
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=3.1e-17 Score=140.70 Aligned_cols=138 Identities=26% Similarity=0.304 Sum_probs=102.6
Q ss_pred HHHHHHHHhcC-CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 3 EQECQRWAAKG-INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 3 ~~~v~~l~~~~-~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
.+++++...+. +++++++.++++++|++|+|.|+..+ ++|+|+++|||++|+||+|++++++| .++.+++|++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~gK~~al~~~l~~~---~~d~V~~~DaD~~~~~d~l~~~~~~f-~~~~~~~v~~~~ 174 (439)
T COG1215 99 YEILEELGAEYGPNFRVIYPEKKNGGKAGALNNGLKRA---KGDVVVILDADTVPEPDALRELVSPF-EDPPVGAVVGTP 174 (439)
T ss_pred HHHHHHHHhhcCcceEEEeccccCccchHHHHHHHhhc---CCCEEEEEcCCCCCChhHHHHHHhhh-cCCCeeEEeCCc
Confidence 45677777766 57777744133445999999999999 99999999999999999999999999 566666666666
Q ss_pred eeecCC--cc-HHHHHHHHHHHHHHhhhhcccccCC-chhH-HHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 82 RFAKEA--KE-LTEARANNEAKAELESRLRDAQEHE-TMLV-QALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 82 ~~~N~~--~~-l~~~~~~~ey~~~~~~~~~~ai~~g-~m~~-gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
...|.. .+ +.+.+. .+|...+..+.+.....| .+.. |+...+||. ++.+.|||+++++|||..
T Consensus 175 ~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~----------aL~~~g~~~~~~i~ED~~ 242 (439)
T COG1215 175 RIRNRPDPSNLLGRIQA-IEYLSAFYFRLRAASKGGLISFLSGSSSAFRRS----------ALEEVGGWLEDTITEDAD 242 (439)
T ss_pred eeeecCChhhhcchhcc-hhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHH----------HHHHhCCCCCCceeccHH
Confidence 666654 44 455554 466665554433333333 2222 999999999 999999999999999974
No 9
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.71 E-value=9.1e-17 Score=127.04 Aligned_cols=139 Identities=23% Similarity=0.381 Sum_probs=97.1
Q ss_pred HHHHHHhc-CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceee
Q 037406 5 ECQRWAAK-GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRF 83 (162)
Q Consensus 5 ~v~~l~~~-~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~ 83 (162)
+++++.++ ++++++++..++.|+|++|+|.|++.+ .+++|||+++|+|++++|++|.+++..| .+|++++|+++..+
T Consensus 46 ~i~~~~~~~~~~i~~i~~~~~~G~~~~a~n~g~~~a-~~~~d~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~ 123 (236)
T cd06435 46 PVEAHCAQLGERFRFFHVEPLPGAKAGALNYALERT-APDAEIIAVIDADYQVEPDWLKRLVPIF-DDPRVGFVQAPQDY 123 (236)
T ss_pred HHHHHHHHhCCcEEEEEcCCCCCCchHHHHHHHHhc-CCCCCEEEEEcCCCCcCHHHHHHHHHHh-cCCCeeEEecCccc
Confidence 34455443 457888888777888999999999997 2248999999999999999999999999 68999999987655
Q ss_pred ecCCccHHHHHHHHHHHHHHhhhhcccccCCc-hhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 84 AKEAKELTEARANNEAKAELESRLRDAQEHET-MLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 84 ~N~~~~l~~~~~~~ey~~~~~~~~~~ai~~g~-m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
.+..........++.+..++..........+. ...|+...+|+. ++.+.|||++.+..||..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~----------~~~~iGgf~~~~~~eD~d 186 (236)
T cd06435 124 RDGEESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRS----------ALDDVGGWDEWCITEDSE 186 (236)
T ss_pred cCCCccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHH----------HHHHhCCCCCccccchHH
Confidence 55544433333344444443322110011111 122555567888 888999999999999864
No 10
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.70 E-value=7.8e-17 Score=125.24 Aligned_cols=129 Identities=24% Similarity=0.280 Sum_probs=88.5
Q ss_pred hcCCCEEEEEeC---CCCCChHHHHHHHHHhcc--------CCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEec
Q 037406 11 AKGINIRYESRE---NRTGYKAGALKEGLKRSY--------VKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 11 ~~~~~v~~i~~~---~~~G~KagAlN~gl~~a~--------~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~ 79 (162)
..++++++++++ .+.| |++|+|.|++.+- ..++|||+++|||++++|++|+++.+.| .+|++++|++
T Consensus 47 ~~~~~v~~i~~~~~~~~~G-k~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~ 124 (191)
T cd06436 47 ITDSRVHLLRRHLPNARTG-KGDALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF-SDPRVAGTQS 124 (191)
T ss_pred ecCCcEEEEeccCCcCCCC-HHHHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh-cCCceEEEee
Confidence 345789988763 2345 9999999999861 1124899999999999999999999988 7999999999
Q ss_pred ceeeecCCccHHHHHHHHHHHHHHhhh--hcccccCCch-hHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc--chhhH
Q 037406 80 RWRFAKEAKELTEARANNEAKAELESR--LRDAQEHETM-LVQALEELRQTLSRIKQQVFALFIEIVGLNLA--NLQND 153 (162)
Q Consensus 80 ~~~~~N~~~~l~~~~~~~ey~~~~~~~--~~~ai~~g~m-~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~--~~~~d 153 (162)
++.+.|...++.......||..++... .+.. .|.+ +.|.-..+|+. ++.+.|||++- +||||
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~G~~~~~r~~----------~l~~vgg~~~~~~~~~ED 191 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRAL--TGTVGLGGNGQFMRLS----------ALDGLIGEEPWSDSLLED 191 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHh--cCcEEECCeeEEEeHH----------HHHHhhcCCCCchhhcCC
Confidence 999999887754433344555443221 1111 1111 11333345555 66677777764 99998
No 11
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.69 E-value=2.6e-16 Score=144.72 Aligned_cols=89 Identities=20% Similarity=0.223 Sum_probs=77.1
Q ss_pred HHHHHhc---CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 6 CQRWAAK---GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 6 v~~l~~~---~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
+++++++ +.++.|.+|++|.|.|+||+|.+++.. .+++|||+++|||++++||+|++++++|++||++|+||+++.
T Consensus 181 ~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~~-~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~ 259 (691)
T PRK05454 181 WLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRRW-GGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPV 259 (691)
T ss_pred HHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHhc-CCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCcc
Confidence 4455554 458999999989999999999999984 448899999999999999999999999988999999999999
Q ss_pred eecCCccHHHHHH
Q 037406 83 FAKEAKELTEARA 95 (162)
Q Consensus 83 ~~N~~~~l~~~~~ 95 (162)
+.|.++.+++.|.
T Consensus 260 ~~n~~slfaR~qq 272 (691)
T PRK05454 260 AVGADTLFARLQQ 272 (691)
T ss_pred CcCCCCHHHHHHH
Confidence 9998866777764
No 12
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.68 E-value=7.2e-16 Score=123.33 Aligned_cols=138 Identities=18% Similarity=0.163 Sum_probs=92.2
Q ss_pred HHHHHHHhc-CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcC-CCeEEEecce
Q 037406 4 QECQRWAAK-GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQN-SDIALVQARW 81 (162)
Q Consensus 4 ~~v~~l~~~-~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~d-p~vg~V~~~~ 81 (162)
++++++..+ ..+++++....+.| |++|+|.|++++ +||||+++|||++++|++|.+++.+|.++ +++++++++.
T Consensus 48 ~i~~~~~~~~~~~i~~~~~~~~~G-~~~a~n~g~~~a---~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 123 (241)
T cd06427 48 AAARALRLPSIFRVVVVPPSQPRT-KPKACNYALAFA---RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPL 123 (241)
T ss_pred HHHHHhccCCCeeEEEecCCCCCc-hHHHHHHHHHhc---CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCce
Confidence 345555331 23444444434455 999999999999 99999999999999999999999999654 8999999998
Q ss_pred eeecCCccHHHHHHHHHHHHHHhhhhccc--ccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 82 RFAKEAKELTEARANNEAKAELESRLRDA--QEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 82 ~~~N~~~~l~~~~~~~ey~~~~~~~~~~a--i~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
.+.|...++.......++..++....... ......+.|+-..+||+ ++.+.|||++.+++||.-
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~----------~~~~vgg~~~~~~~eD~~ 189 (241)
T cd06427 124 NYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTD----------VLRELGGWDPFNVTEDAD 189 (241)
T ss_pred EeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHH----------HHHHcCCCCcccchhhHH
Confidence 88876655433222223332222111100 11111122555567888 888999999988888863
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.66 E-value=9.4e-16 Score=120.29 Aligned_cols=138 Identities=23% Similarity=0.316 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++..++ +++++..+.+.|+|++++|.|++.+ +||||+++|+|+.++|++|++++..|..+|++++|+++..
T Consensus 48 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~n~~~~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~ 123 (234)
T cd06421 48 RALAAELGVEY-GYRYLTRPDNRHAKAGNLNNALAHT---TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQF 123 (234)
T ss_pred HHHHHHhhccc-CceEEEeCCCCCCcHHHHHHHHHhC---CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceE
Confidence 45666676544 5778877778888999999999999 9999999999999999999999999966699999999877
Q ss_pred eecCCcc--HHHHHHHHHHHHHHhhh-hcccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHHH
Q 037406 83 FAKEAKE--LTEARANNEAKAELESR-LRDAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDVL 155 (162)
Q Consensus 83 ~~N~~~~--l~~~~~~~ey~~~~~~~-~~~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~~ 155 (162)
+.+.+.. +.+.... ....+.... ..........+.|+.-.+|++ ++...|||++.++.||.-
T Consensus 124 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~----------~~~~ig~~~~~~~~eD~~ 188 (234)
T cd06421 124 FYNPDPFDWLADGAPN-EQELFYGVIQPGRDRWGAAFCCGSGAVVRRE----------ALDEIGGFPTDSVTEDLA 188 (234)
T ss_pred EecCCcchhHHHHHHH-HHHHHHHHHHHHHhhcCCceecCceeeEeHH----------HHHHhCCCCccceeccHH
Confidence 7666543 2221111 111111111 000011112223556677888 788899999999999963
No 14
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.65 E-value=1.6e-15 Score=129.85 Aligned_cols=137 Identities=23% Similarity=0.241 Sum_probs=95.1
Q ss_pred HHHHHHHHhcCCC--EEEEEeCCCCC--ChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEe
Q 037406 3 EQECQRWAAKGIN--IRYESRENRTG--YKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQ 78 (162)
Q Consensus 3 ~~~v~~l~~~~~~--v~~i~~~~~~G--~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~ 78 (162)
.++++++++++|+ ++++..+.+.| +|.+|++.+++++ +||||+++|||++++||||++++..| .+|++++|+
T Consensus 85 ~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a---~ge~i~~~DaD~~~~p~~L~~lv~~~-~~~~v~~V~ 160 (373)
T TIGR03472 85 LAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHA---RHDILVIADSDISVGPDYLRQVVAPL-ADPDVGLVT 160 (373)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhc---cCCEEEEECCCCCcChhHHHHHHHHh-cCCCcceEe
Confidence 4678888877665 77786665555 3889999999999 99999999999999999999999999 799999999
Q ss_pred cceeeecCCccHHHHHHH---HHHHHHHhhhhcccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC--cchhhH
Q 037406 79 ARWRFAKEAKELTEARAN---NEAKAELESRLRDAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNL--ANLQND 153 (162)
Q Consensus 79 ~~~~~~N~~~~l~~~~~~---~ey~~~~~~~~~~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~--~~~~~d 153 (162)
+.....+.++.+.+.... ..+....... .......+..|+.-++||+ ++.+.|||++ ++++||
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~a~RR~----------~l~~iGGf~~~~~~~~ED 228 (373)
T TIGR03472 161 CLYRGRPVPGFWSRLGAMGINHNFLPSVMVA--RALGRARFCFGATMALRRA----------TLEAIGGLAALAHHLADD 228 (373)
T ss_pred ccccCCCCCCHHHHHHHHHhhhhhhHHHHHH--HhccCCccccChhhheeHH----------HHHHcCChHHhcccchHH
Confidence 965433332223333221 1111111000 0011112234777788999 8999999985 788899
Q ss_pred HH
Q 037406 154 VL 155 (162)
Q Consensus 154 ~~ 155 (162)
+.
T Consensus 229 ~~ 230 (373)
T TIGR03472 229 YW 230 (373)
T ss_pred HH
Confidence 64
No 15
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.64 E-value=1.9e-15 Score=116.08 Aligned_cols=118 Identities=17% Similarity=0.118 Sum_probs=82.2
Q ss_pred CCCCChHHHHHHHHHhcc--CCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHHHHHHHHHH
Q 037406 23 NRTGYKAGALKEGLKRSY--VKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTEARANNEAK 100 (162)
Q Consensus 23 ~~~G~KagAlN~gl~~a~--~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~~~~~~ey~ 100 (162)
.+.| |++|+|.|+..+. ..++|+++++|||++++|++|.+++..|..+ .++|++.+...+.+.++.......++.
T Consensus 60 ~~~g-k~~aln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~--~~~v~g~~~~~~~~~~~~~~~~~~~~~ 136 (183)
T cd06438 60 ERRG-KGYALDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAG--ARVVQAYYNSKNPDDSWITRLYAFAFL 136 (183)
T ss_pred CCCC-HHHHHHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhC--CCeeEEEEeeeCCccCHHHHHHHHHHH
Confidence 3445 9999999999861 2359999999999999999999999999543 467888887777665654333333443
Q ss_pred HHHhhh--hcccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 037406 101 AELESR--LRDAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDV 154 (162)
Q Consensus 101 ~~~~~~--~~~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~ 154 (162)
...... .+........+.|+-.++||. ++.+ |||.+.+++||+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~G~~~~~rr~----------~l~~-~g~~~~~l~ED~ 181 (183)
T cd06438 137 VFNRLRPLGRSNLGLSCQLGGTGMCFPWA----------VLRQ-APWAAHSLTEDL 181 (183)
T ss_pred HHHHHHHHHHHHcCCCeeecCchhhhHHH----------HHHh-CCCCCCCccccc
Confidence 333222 111121112233666789999 7777 999999999996
No 16
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.55 E-value=3.4e-14 Score=103.87 Aligned_cols=135 Identities=26% Similarity=0.327 Sum_probs=92.4
Q ss_pred HHHHHHHhcC-CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 4 QECQRWAAKG-INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 4 ~~v~~l~~~~-~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
+++.++..++ +.+.+++.+++.| |+.++|.|++.+ ++|||+++|+|..++|++|++++..+..+|++++|++...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~n~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 117 (180)
T cd06423 42 EILEELAALYIRRVLVVRDKENGG-KAGALNAGLRHA---KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVR 117 (180)
T ss_pred HHHHHHhccccceEEEEEecccCC-chHHHHHHHHhc---CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEE
Confidence 4555555543 3466676666666 899999999999 9999999999999999999999666668999999999877
Q ss_pred eecCCcc-HHHHHHHHHHHHHHhhhhcc-cccCC-chhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhH
Q 037406 83 FAKEAKE-LTEARANNEAKAELESRLRD-AQEHE-TMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQND 153 (162)
Q Consensus 83 ~~N~~~~-l~~~~~~~ey~~~~~~~~~~-ai~~g-~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d 153 (162)
..+...+ +..... .++.......... ..... ..+.|....+|+. ++.+.|||++..+.||
T Consensus 118 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~ggf~~~~~~eD 180 (180)
T cd06423 118 VRNGSENLLTRLQA-IEYLSIFRLGRRAQSALGGVLVLSGAFGAFRRE----------ALREVGGWDEDTLTED 180 (180)
T ss_pred EecCcCcceeccch-heecceeeeeeehhheecceeecCchHHHHHHH----------HHHHhCCccccCcCCC
Confidence 6655423 222221 1221111110000 00011 1122777778888 8889999999999988
No 17
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.54 E-value=8.7e-14 Score=107.10 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++.++++ +++++.+.+.| +++|+|.|++.+ +||||+++|+|..++|++|++++..|+++|++++|.+...
T Consensus 45 ~~~~~~~~~~~~-i~~i~~~~n~G-~~~a~N~g~~~a---~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 119 (201)
T cd04195 45 NEVLEEFKRKLP-LKVVPLEKNRG-LGKALNEGLKHC---TYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVL 119 (201)
T ss_pred HHHHHHHHhcCC-eEEEEcCcccc-HHHHHHHHHHhc---CCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEE
Confidence 466778877665 99998888777 899999999999 9999999999999999999999999988999999999876
Q ss_pred eecCC
Q 037406 83 FAKEA 87 (162)
Q Consensus 83 ~~N~~ 87 (162)
..+.+
T Consensus 120 ~~~~~ 124 (201)
T cd04195 120 EFDSD 124 (201)
T ss_pred EECCC
Confidence 65443
No 18
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.52 E-value=6.7e-16 Score=121.29 Aligned_cols=133 Identities=23% Similarity=0.200 Sum_probs=78.2
Q ss_pred HHHHHHhcCCC--EEEEEeCCCCC--ChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 5 ECQRWAAKGIN--IRYESRENRTG--YKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 5 ~v~~l~~~~~~--v~~i~~~~~~G--~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
.++++.+..++ +++++.+.+.| +|++|+|.|++.+ ++|||+++|+|++++|++|++++++| .+|++++|+++
T Consensus 47 ~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~ 122 (228)
T PF13641_consen 47 ILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAA---RGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGP 122 (228)
T ss_dssp THHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEE
T ss_pred HHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhc---CCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeee
Confidence 45666665554 68888876555 5999999999999 99999999999999999999999999 89999999998
Q ss_pred eeeecCCccHHHHHHHHHHHHHHh-hh-hcccccCCchh-HHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 037406 81 WRFAKEAKELTEARANNEAKAELE-SR-LRDAQEHETML-VQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDV 154 (162)
Q Consensus 81 ~~~~N~~~~l~~~~~~~ey~~~~~-~~-~~~ai~~g~m~-~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~ 154 (162)
..+.+....+...+.. ++..... .. ..... +... .|+.-.+|+. ++.+.|||++.++.||.
T Consensus 123 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~G~~~~~rr~----------~~~~~g~fd~~~~~eD~ 186 (228)
T PF13641_consen 123 VFPDNDRNWLTRLQDL-FFARWHLRFRSGRRAL--GVAFLSGSGMLFRRS----------ALEEVGGFDPFILGEDF 186 (228)
T ss_dssp EEETTCCCEEEE-TT---S-EETTTS-TT-B------S-B--TEEEEEHH----------HHHHH-S--SSSSSHHH
T ss_pred EeecCCCCHHHHHHHH-HHhhhhhhhhhhhccc--ceeeccCcEEEEEHH----------HHHHhCCCCCCCcccHH
Confidence 8666543333222211 1111111 00 00111 1111 2555667777 88899999998888887
No 19
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.52 E-value=4e-14 Score=110.24 Aligned_cols=121 Identities=24% Similarity=0.263 Sum_probs=84.1
Q ss_pred EEEeCCCCC--ChHHHHHHHHHh-ccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHHHH
Q 037406 18 YESRENRTG--YKAGALKEGLKR-SYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTEAR 94 (162)
Q Consensus 18 ~i~~~~~~G--~KagAlN~gl~~-a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~~~ 94 (162)
++..+...| .|.+||..+++. + ++|+|++.|+|..++||+|++++.+| .+|++|+|++.....+.+..+....
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~~~a---~~d~~~~~DsDi~v~p~~L~~lv~~l-~~p~vglVt~~~~~~~~~~~~~~l~ 81 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLEAGA---KYDYLVISDSDIRVPPDYLRELVAPL-ADPGVGLVTGLPRGVPARGFWSRLE 81 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHHhhC---CCCEEEEECCCeeECHHHHHHHHHHH-hCCCCcEEEecccccCCcCHHHHHH
Confidence 554444433 499999999998 8 99999999999999999999999999 7899999999777666654333332
Q ss_pred HHHHHHHHHhhhhcccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC--cchhhHHH
Q 037406 95 ANNEAKAELESRLRDAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNL--ANLQNDVL 155 (162)
Q Consensus 95 ~~~ey~~~~~~~~~~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~--~~~~~d~~ 155 (162)
.... .+..... .+......+.|+..++||+ ++.++|||+. ++++||..
T Consensus 82 ~~~~--~~~~~~~-~a~~~~~~~~G~~m~~rr~----------~L~~~GG~~~l~~~ladD~~ 131 (175)
T PF13506_consen 82 AAFF--NFLPGVL-QALGGAPFAWGGSMAFRRE----------ALEEIGGFEALADYLADDYA 131 (175)
T ss_pred HHHH--hHHHHHH-HHhcCCCceecceeeeEHH----------HHHHcccHHHHhhhhhHHHH
Confidence 2111 2211111 1111112233777777887 7778888887 88888864
No 20
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.52 E-value=4.5e-13 Score=105.46 Aligned_cols=72 Identities=21% Similarity=0.246 Sum_probs=62.1
Q ss_pred cCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCcc
Q 037406 12 KGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKE 89 (162)
Q Consensus 12 ~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~ 89 (162)
+.+.++++. +++.| |++|+|.|++.+ ++|||+++|+|+.++|++|++++..|. +|++++|++.....+....
T Consensus 51 ~~~~~~v~~-~~~~g-~~~a~n~g~~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~~~~~ 122 (235)
T cd06434 51 KYGGIFVIT-VPHPG-KRRALAEGIRHV---TTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDS 122 (235)
T ss_pred cCCcEEEEe-cCCCC-hHHHHHHHHHHh---CCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeecCccc
Confidence 456666665 44556 999999999999 999999999999999999999999995 9999999999888777544
No 21
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.48 E-value=2e-13 Score=121.89 Aligned_cols=137 Identities=15% Similarity=0.035 Sum_probs=88.5
Q ss_pred HHHHHHHhcCCCEEEEEeCCC-CCChHHHHHHHHHhc------cCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEE
Q 037406 4 QECQRWAAKGINIRYESRENR-TGYKAGALKEGLKRS------YVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIAL 76 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~-~G~KagAlN~gl~~a------~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~ 76 (162)
++++++++++|+++++..+.+ +.+|++|||.|++.+ ...++|+|+++|||++++|++|+.+..++ |+.++
T Consensus 112 ~~v~~l~~~~p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~---~~~~~ 188 (504)
T PRK14716 112 REVDRLAARYPRVHLVIVPHDGPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL---PRHDF 188 (504)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc---CCCCE
Confidence 577888888998886654432 335999999998764 11245999999999999999999887665 35578
Q ss_pred EecceeeecCCcc-HHHHHHHHHHHHHHhhhh--cccccCCchh--HHHHHHHHhHHHHHHHHHHHHHHHh-----cC-C
Q 037406 77 VQARWRFAKEAKE-LTEARANNEAKAELESRL--RDAQEHETML--VQALEELRQTLSRIKQQVFALFIEI-----VG-L 145 (162)
Q Consensus 77 V~~~~~~~N~~~~-l~~~~~~~ey~~~~~~~~--~~ai~~g~m~--~gal~~~r~~~~~~~~~~~~~~~~~-----~g-f 145 (162)
||.+....+...+ +...+...||..+..... ++. .|.++ .|+-.++||. ++.+. || |
T Consensus 189 VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~--LG~~~~~~Gtg~afRR~----------aLe~l~~~~GG~~f 256 (504)
T PRK14716 189 VQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREA--LGGLIPSAGVGTAFSRR----------ALERLAAERGGQPF 256 (504)
T ss_pred EecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHh--cCCccccCCeeEEeEHH----------HHHHHHhhcCCCCC
Confidence 9988766655443 433333334433221111 111 12222 2666677777 44443 33 9
Q ss_pred CCcchhhHHH
Q 037406 146 NLANLQNDVL 155 (162)
Q Consensus 146 ~~~~~~~d~~ 155 (162)
+++++|||.-
T Consensus 257 d~~sLTED~d 266 (504)
T PRK14716 257 DSDSLTEDYD 266 (504)
T ss_pred CCCCcchHHH
Confidence 9999999974
No 22
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.48 E-value=2.9e-13 Score=105.41 Aligned_cols=122 Identities=17% Similarity=0.212 Sum_probs=79.2
Q ss_pred hcCCCEEEEEeCC--CCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCc
Q 037406 11 AKGINIRYESREN--RTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAK 88 (162)
Q Consensus 11 ~~~~~v~~i~~~~--~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~ 88 (162)
..++++++++.+. +.| |+.++|.|++.+ ++|||+++|+|++++|+||++++..| .+++.++|+++..+. ...
T Consensus 52 ~~~~~v~~~~~~~~~~~g-~~~a~n~g~~~~---~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~-~~~ 125 (229)
T cd04192 52 KPNFQLKILNNSRVSISG-KKNALTTAIKAA---KGDWIVTTDADCVVPSNWLLTFVAFI-QKEQIGLVAGPVIYF-KGK 125 (229)
T ss_pred CCCcceEEeeccCcccch-hHHHHHHHHHHh---cCCEEEEECCCcccCHHHHHHHHHHh-hcCCCcEEeeeeeec-CCc
Confidence 3467888887663 344 899999999999 99999999999999999999999998 566778888876655 333
Q ss_pred cHHHHHHHHHHHHHHhhhhccc-ccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc
Q 037406 89 ELTEARANNEAKAELESRLRDA-QEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLA 148 (162)
Q Consensus 89 ~l~~~~~~~ey~~~~~~~~~~a-i~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~ 148 (162)
++.......++........... .....+..|+-..+|++ ++.+.|||.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~----------~~~~~ggf~~~ 176 (229)
T cd04192 126 SLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKE----------AFFEVGGFEGN 176 (229)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHH----------HHHHhcCCccc
Confidence 3322222222222211111111 11111122444456777 88889999764
No 23
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.47 E-value=7.2e-14 Score=112.76 Aligned_cols=103 Identities=14% Similarity=0.046 Sum_probs=73.3
Q ss_pred HHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCcc-HHHHHHHHHHHHHHhhh--h
Q 037406 31 ALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKE-LTEARANNEAKAELESR--L 107 (162)
Q Consensus 31 AlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~-l~~~~~~~ey~~~~~~~--~ 107 (162)
++|.++..+ ++|||+++|||++++||+|++++.+|..+|++|+|+++....|...+ +...| ..||....... .
T Consensus 64 ~~~~~~~~a---~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q-~~ey~~~~~~~~~~ 139 (244)
T cd04190 64 YFCRVLFPD---DPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQ-VFEYAISHWLDKAF 139 (244)
T ss_pred HHHHHhhcC---CCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhH-heehhhhhhhcccH
Confidence 567788788 99999999999999999999999999779999999999888887655 44444 34665543322 1
Q ss_pred cccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC
Q 037406 108 RDAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNL 147 (162)
Q Consensus 108 ~~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~ 147 (162)
.........+.|+..++|+. ++.+.+|+.+
T Consensus 140 ~s~~g~~~~~~G~~~~~R~~----------~l~~~~~~~~ 169 (244)
T cd04190 140 ESVFGFVTCLPGCFSMYRIE----------ALKGDNGGKG 169 (244)
T ss_pred HHcCCceEECCCceEEEEeh----------hhcCCccccc
Confidence 11122222233888888887 5555555543
No 24
>PLN02893 Cellulose synthase-like protein
Probab=99.46 E-value=1.5e-13 Score=126.36 Aligned_cols=76 Identities=30% Similarity=0.368 Sum_probs=65.5
Q ss_pred CCCEEEEEeCCCC----CChHHHHHHHHHhc-cCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeEEEeccee
Q 037406 13 GINIRYESRENRT----GYKAGALKEGLKRS-YVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNS----DIALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~----G~KagAlN~gl~~a-~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp----~vg~V~~~~~ 82 (162)
-|++.|++|++++ ++||||||.++..+ ...+|+||+++|||..+ .|++|++.+.+| .|| ++++||.||.
T Consensus 263 lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff-~Dp~~~~~vafVQfPQ~ 341 (734)
T PLN02893 263 MPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYL-LDPSMDPKLGYVQFPQI 341 (734)
T ss_pred CCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHh-cCCCcCCceEEEeCccc
Confidence 5889999999885 67999999999962 12389999999999996 699999999999 566 7999999999
Q ss_pred eecCCcc
Q 037406 83 FAKEAKE 89 (162)
Q Consensus 83 ~~N~~~~ 89 (162)
+.|.+.+
T Consensus 342 F~~i~~~ 348 (734)
T PLN02893 342 FHGINKN 348 (734)
T ss_pred ccCCCcC
Confidence 9987654
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.46 E-value=1.7e-12 Score=103.41 Aligned_cols=131 Identities=19% Similarity=0.220 Sum_probs=89.2
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++.++ +++++..+++.| |++|+|.|++.+ ++|||+++|+|++++|++|++++..| .+|++++|++...
T Consensus 75 ~~~~~~~~~~--~v~~i~~~~~~g-~~~a~n~gi~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~ 147 (251)
T cd06439 75 AEIAREYADK--GVKLLRFPERRG-KAAALNRALALA---TGEIVVFTDANALLDPDALRLLVRHF-ADPSVGAVSGELV 147 (251)
T ss_pred HHHHHHHhhC--cEEEEEcCCCCC-hHHHHHHHHHHc---CCCEEEEEccccCcCHHHHHHHHHHh-cCCCccEEEeEEE
Confidence 4566677654 688888877777 999999999999 99999999999999999999999999 6899999999887
Q ss_pred eecCCccHHHHHHHHHHHHHHhhhhcccccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 037406 83 FAKEAKELTEARANNEAKAELESRLRDAQEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDV 154 (162)
Q Consensus 83 ~~N~~~~l~~~~~~~ey~~~~~~~~~~ai~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~ 154 (162)
..+....-......+.+..+.... ...........|+...+|+. ++. ||.+.+..||.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~rr~----------~~~---~~~~~~~~eD~ 205 (251)
T cd06439 148 IVDGGGSGSGEGLYWKYENWLKRA-ESRLGSTVGANGAIYAIRRE----------LFR---PLPADTINDDF 205 (251)
T ss_pred ecCCcccchhHHHHHHHHHHHHHH-HHhcCCeeeecchHHHhHHH----------Hhc---CCCcccchhHH
Confidence 766543111111122222221100 00011111122666677777 333 78888888884
No 26
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.43 E-value=3.4e-13 Score=104.72 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=61.1
Q ss_pred HHHHHHHhcCC--CEEEEEeCCCCC--ChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEec
Q 037406 4 QECQRWAAKGI--NIRYESRENRTG--YKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 4 ~~v~~l~~~~~--~v~~i~~~~~~G--~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~ 79 (162)
++++++..+++ +++++..+++.| +|++++|.|++.+ +|||++++|+|+.++|+||++++.+| .+|++++|++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~v~~ 121 (196)
T cd02520 46 PVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEA---RYDILVISDSDISVPPDYLRRMVAPL-MDPGVGLVTC 121 (196)
T ss_pred HHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhC---CCCEEEEECCCceEChhHHHHHHHHh-hCCCCCeEEe
Confidence 45667766665 456676655544 4788999999999 99999999999999999999999998 6899999998
Q ss_pred c
Q 037406 80 R 80 (162)
Q Consensus 80 ~ 80 (162)
.
T Consensus 122 ~ 122 (196)
T cd02520 122 L 122 (196)
T ss_pred e
Confidence 6
No 27
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.37 E-value=2.1e-12 Score=119.58 Aligned_cols=140 Identities=16% Similarity=0.080 Sum_probs=88.8
Q ss_pred HHHHHHHhcCCCEEEEEeCC-CCCChHHHHHHHHHhcc------CCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEE
Q 037406 4 QECQRWAAKGINIRYESREN-RTGYKAGALKEGLKRSY------VKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIAL 76 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~-~~G~KagAlN~gl~~a~------~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~ 76 (162)
++++++++++|+++++..++ .+++|++|||.+++.+. ..++++++++|||++++||+|+ ++.+| .+|. ++
T Consensus 109 ~~~~~l~~~~p~~~~v~~~~~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l-~~~~-~~ 185 (727)
T PRK11234 109 ADVDAVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYL-VERK-DL 185 (727)
T ss_pred HHHHHHHHHCCCcEEEEeCCCCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhh-cCCC-Ce
Confidence 67888888888887665443 13349999999998751 2245789999999999999998 67787 5666 99
Q ss_pred EecceeeecCCc-cHHHHHHHHHHHHHHhh--hhcccccCCchhH-HHHHHH-HhHHHHHHHHHHHHHHHhc---CCCCc
Q 037406 77 VQARWRFAKEAK-ELTEARANNEAKAELES--RLRDAQEHETMLV-QALEEL-RQTLSRIKQQVFALFIEIV---GLNLA 148 (162)
Q Consensus 77 V~~~~~~~N~~~-~l~~~~~~~ey~~~~~~--~~~~ai~~g~m~~-gal~~~-r~~~~~~~~~~~~~~~~~~---gf~~~ 148 (162)
||++....++.. .+.......||...... .-+... +|+... |+--++ |+.+ + ++.+.| +|+.+
T Consensus 186 VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~l-gg~~~l~G~~~af~Rr~l-----~---al~~~ggg~~~~~~ 256 (727)
T PRK11234 186 IQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREAL-AGQVPSAGVGTCFSRRAV-----T---ALLEDGDGIAFDVQ 256 (727)
T ss_pred EeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHc-CCCcccCCceEEEecccH-----H---HHHHhcCCCCcCCC
Confidence 999865444321 23322333455433221 111222 233322 544555 5531 1 556666 69999
Q ss_pred chhhHHH
Q 037406 149 NLQNDVL 155 (162)
Q Consensus 149 ~~~~d~~ 155 (162)
++|||.-
T Consensus 257 ~lTED~d 263 (727)
T PRK11234 257 SLTEDYD 263 (727)
T ss_pred cchHHHH
Confidence 9999963
No 28
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.35 E-value=3.1e-12 Score=98.36 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
+++++.+..+++++++++.+.+.| ++.|+|.|++.+ ++||++++|+|+.++|++|++++..|..+|++++|.+...
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~a~n~g~~~a---~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~ 122 (202)
T cd04184 47 KRVLKKYAAQDPRIKVVFREENGG-ISAATNSALELA---TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDED 122 (202)
T ss_pred HHHHHHHHhcCCCEEEEEcccCCC-HHHHHHHHHHhh---cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHH
Confidence 455666666778899988877777 799999999999 9999999999999999999999999977999999987654
Q ss_pred e
Q 037406 83 F 83 (162)
Q Consensus 83 ~ 83 (162)
.
T Consensus 123 ~ 123 (202)
T cd04184 123 K 123 (202)
T ss_pred h
Confidence 3
No 29
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.32 E-value=2.7e-11 Score=91.69 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=67.3
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
+++++++..+.+.++++..+.+.| |++|+|.|++.+ ++||++++|+|..+.|++|++++..+ .+++.++|.++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~n~G-~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~g~~~ 117 (185)
T cd04179 43 AEIARELAARVPRVRVIRLSRNFG-KGAAVRAGFKAA---RGDIVVTMDADLQHPPEDIPKLLEKL-LEGGADVVIGSRF 117 (185)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCC-ccHHHHHHHHHh---cCCEEEEEeCCCCCCHHHHHHHHHHH-hccCCcEEEEEee
Confidence 567777777788888888888888 899999999999 99999999999999999999999997 4556777888765
Q ss_pred eecC
Q 037406 83 FAKE 86 (162)
Q Consensus 83 ~~N~ 86 (162)
..+.
T Consensus 118 ~~~~ 121 (185)
T cd04179 118 VRGG 121 (185)
T ss_pred cCCC
Confidence 5554
No 30
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.30 E-value=2.7e-11 Score=92.22 Aligned_cols=77 Identities=17% Similarity=0.223 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++..+++++++++..++.| |++|+|.|++.+ ++|||+++|+|..++|++|++++..+ +++.++|.+...
T Consensus 44 ~~~~~~~~~~~~~i~~i~~~~n~G-~~~a~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~--~~~~~~v~g~~~ 117 (181)
T cd04187 44 LEILRELAARDPRVKVIRLSRNFG-QQAALLAGLDHA---RGDAVITMDADLQDPPELIPEMLAKW--EEGYDVVYGVRK 117 (181)
T ss_pred HHHHHHHHhhCCCEEEEEecCCCC-cHHHHHHHHHhc---CCCEEEEEeCCCCCCHHHHHHHHHHH--hCCCcEEEEEec
Confidence 356777777788999998887777 899999999999 99999999999999999999999987 345566766654
Q ss_pred eec
Q 037406 83 FAK 85 (162)
Q Consensus 83 ~~N 85 (162)
..+
T Consensus 118 ~~~ 120 (181)
T cd04187 118 NRK 120 (181)
T ss_pred CCc
Confidence 443
No 31
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.29 E-value=2.5e-11 Score=111.95 Aligned_cols=137 Identities=16% Similarity=0.113 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCCEEEEEeCCC-CCChHHHHHHHHHhcc------CCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEE
Q 037406 4 QECQRWAAKGINIRYESRENR-TGYKAGALKEGLKRSY------VKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIAL 76 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~-~G~KagAlN~gl~~a~------~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~ 76 (162)
+++++++..+|++++++.+++ +.+|+.|||+++..+. ....+.|+++|||.+|+|+.|+.+ .++..++ .+
T Consensus 117 ~~~~~~~~~~p~~~~v~~~~~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~--~~ 193 (703)
T PRK15489 117 TEVERMRRRYKRLVRVEVPHDGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK--DL 193 (703)
T ss_pred HHHHHHhccCCcEEEEEcCCCCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc--ce
Confidence 567788777889998887755 2359999999998741 112344999999999999999877 5553555 56
Q ss_pred Eeccee-eecCCccHHHHHHHHHHHHHHhhh--hcccccCCchhH-HHHHHHHhHHHHHHHHHHHHHHHh---c---CCC
Q 037406 77 VQARWR-FAKEAKELTEARANNEAKAELESR--LRDAQEHETMLV-QALEELRQTLSRIKQQVFALFIEI---V---GLN 146 (162)
Q Consensus 77 V~~~~~-~~N~~~~l~~~~~~~ey~~~~~~~--~~~ai~~g~m~~-gal~~~r~~~~~~~~~~~~~~~~~---~---gf~ 146 (162)
+|++.. ..|..+++.......||..++... .+..+ .|++-+ |.-..+|+. ++.+. | +||
T Consensus 194 iQ~pV~~~~~~~~~~l~~~~~~Efa~~~~~~l~~r~~l-~~~ipl~Gv~~~frr~----------aL~~l~~~gg~~~~n 262 (703)
T PRK15489 194 VQLPVLSLERKWYEWVAGTYMDEFAEWHQKDLVVRESL-TGTVPSAGVGTCFSRR----------ALLALMKERGNQPFN 262 (703)
T ss_pred eeeeeccCCCccccHHHHHHHHHHHHHhhhHHHHHHHc-CCceeccCcceeeeHH----------HHHHHHHhcCCCCCC
Confidence 888754 344455654444445888877632 22222 233323 556667776 44333 4 599
Q ss_pred CcchhhHH
Q 037406 147 LANLQNDV 154 (162)
Q Consensus 147 ~~~~~~d~ 154 (162)
.++||||.
T Consensus 263 ~~sLTED~ 270 (703)
T PRK15489 263 TSSLTEDY 270 (703)
T ss_pred CCCchHhH
Confidence 99999996
No 32
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.26 E-value=4.1e-11 Score=92.34 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCC-CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 3 EQECQRWAAKGI-NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 3 ~~~v~~l~~~~~-~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
.++++++..+++ .+++++.+.+.| +++++|.|+..+ +||||+++|+|.+++|++|.+++..+..+|..++++++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~G-~~~~~n~g~~~~---~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~ 117 (214)
T cd04196 42 VEIIKEYIDKDPFIIILIRNGKNLG-VARNFESLLQAA---DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDL 117 (214)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCcc-HHHHHHHHHHhC---CCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCc
Confidence 356778877764 456666666666 899999999999 999999999999999999999999966899999999987
Q ss_pred eeecCC
Q 037406 82 RFAKEA 87 (162)
Q Consensus 82 ~~~N~~ 87 (162)
...+.+
T Consensus 118 ~~~~~~ 123 (214)
T cd04196 118 ELVDEN 123 (214)
T ss_pred EEECCC
Confidence 655443
No 33
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.25 E-value=1.6e-11 Score=105.68 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCC---CEEEEEeCC-CC--CChHHHHHHHHHhccCCC-----ccEEEEEcCCCCCChHHHHHHHHHHhcC
Q 037406 3 EQECQRWAAKGI---NIRYESREN-RT--GYKAGALKEGLKRSYVKH-----CEYVAIFDVDFRLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 3 ~~~v~~l~~~~~---~v~~i~~~~-~~--G~KagAlN~gl~~a~~~~-----ge~i~i~DAD~~~~pd~L~~lv~~f~~d 71 (162)
.++++++.+++| ++++++.+. +. ++|+.|+|.|++.+ + +||++++|||+.++|++|++++..+ .+
T Consensus 85 ~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A---~~~~~~gd~llflDaD~~~~p~~l~~lv~~~-~~ 160 (384)
T TIGR03469 85 ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAA---RTLAPPADYLLLTDADIAHGPDNLARLVARA-RA 160 (384)
T ss_pred HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHH---hccCCCCCEEEEECCCCCCChhHHHHHHHHH-Hh
Confidence 356777776665 788887532 22 24999999999999 7 9999999999999999999999999 56
Q ss_pred CCeEEEecceee
Q 037406 72 SDIALVQARWRF 83 (162)
Q Consensus 72 p~vg~V~~~~~~ 83 (162)
+++++|++...+
T Consensus 161 ~~~~~vs~~~~~ 172 (384)
T TIGR03469 161 EGLDLVSLMVRL 172 (384)
T ss_pred CCCCEEEecccc
Confidence 677888765543
No 34
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.24 E-value=1.3e-10 Score=90.70 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++.++++++++++.+.+.| +++|+|.|++.+ ++|||+++|+|++++|++|.+++..+ .+++.++|.+...
T Consensus 42 ~~~~~~~~~~~~~i~~~~~~~n~G-~~~a~n~g~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~g~~~ 116 (224)
T cd06442 42 AEIVRELAKEYPRVRLIVRPGKRG-LGSAYIEGFKAA---RGDVIVVMDADLSHPPEYIPELLEAQ-LEGGADLVIGSRY 116 (224)
T ss_pred HHHHHHHHHhCCceEEEecCCCCC-hHHHHHHHHHHc---CCCEEEEEECCCCCCHHHHHHHHHHH-hcCCCCEEEEeee
Confidence 356778888888888998887777 899999999999 99999999999999999999999997 4567777777543
No 35
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.21 E-value=9.6e-11 Score=92.23 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=64.2
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.+.++++.++.+.+++++.+ +.| +++|+|.|++.+ ++||++++|+|..++|++|++++..+ .+++..+|++...
T Consensus 46 ~~~~~~~~~~~~~v~~i~~~-~~~-~~~a~N~g~~~a---~~d~v~~lD~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~ 119 (249)
T cd02525 46 REIVQEYAAKDPRIRLIDNP-KRI-QSAGLNIGIRNS---RGDIIIRVDAHAVYPKDYILELVEAL-KRTGADNVGGPME 119 (249)
T ss_pred HHHHHHHHhcCCeEEEEeCC-CCC-chHHHHHHHHHh---CCCEEEEECCCccCCHHHHHHHHHHH-hcCCCCEEeccee
Confidence 46777887777889999765 345 788999999999 99999999999999999999999988 6788888888754
Q ss_pred ee
Q 037406 83 FA 84 (162)
Q Consensus 83 ~~ 84 (162)
..
T Consensus 120 ~~ 121 (249)
T cd02525 120 TI 121 (249)
T ss_pred cC
Confidence 43
No 36
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.21 E-value=1.8e-11 Score=101.16 Aligned_cols=65 Identities=12% Similarity=0.167 Sum_probs=56.4
Q ss_pred hcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 11 AKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 11 ~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
...+++++++.+.+.| ++.|+|.|++++ +||||+++|+|+.++|+||++++..+.++|.. +|.+.
T Consensus 55 ~~~~~v~vi~~~~n~G-~~~a~N~g~~~A---~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~ 119 (299)
T cd02510 55 KYLPKVKVLRLKKREG-LIRARIAGARAA---TGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPI 119 (299)
T ss_pred hcCCcEEEEEcCCCCC-HHHHHHHHHHHc---cCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEee
Confidence 3467899999888878 799999999999 99999999999999999999999999767664 55543
No 37
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.20 E-value=1.8e-11 Score=96.40 Aligned_cols=67 Identities=28% Similarity=0.331 Sum_probs=57.4
Q ss_pred cCCCEEEEEeCCCCCChHHHHHHHHHhccCCCc---cEEEEEcCCCCCChHHHHHHH---HHHhcCCCeEEEeccee
Q 037406 12 KGINIRYESRENRTGYKAGALKEGLKRSYVKHC---EYVAIFDVDFRLEPDYLRRAI---PYLVQNSDIALVQARWR 82 (162)
Q Consensus 12 ~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~g---e~i~i~DAD~~~~pd~L~~lv---~~f~~dp~vg~V~~~~~ 82 (162)
..+++++++.+.|.| +++|+|.|++.+ ++ |||+++|+|..++|+||++++ ..+..+|.++++++...
T Consensus 45 ~~~~i~~i~~~~n~G-~~~a~N~g~~~a---~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 117 (237)
T cd02526 45 NSEKIELIHLGENLG-IAKALNIGIKAA---LENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRII 117 (237)
T ss_pred cCCcEEEEECCCcee-hHHhhhHHHHHH---HhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEE
Confidence 357899999888888 899999999998 65 999999999999999999994 55556889998877543
No 38
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.19 E-value=1.1e-10 Score=88.36 Aligned_cols=78 Identities=17% Similarity=0.279 Sum_probs=62.0
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceee
Q 037406 4 QECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRF 83 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~ 83 (162)
++++++..+ +.++..+++.| ++.|+|.|++.+ ++|||+++|+|.++.|+++.+++..+..+|+.++|.++...
T Consensus 43 ~~~~~~~~~---~~~~~~~~~~g-~~~a~n~~~~~a---~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~ 115 (202)
T cd06433 43 DIIKKYEDK---ITYWISEPDKG-IYDAMNKGIALA---TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLL 115 (202)
T ss_pred HHHHHhHhh---cEEEEecCCcC-HHHHHHHHHHHc---CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEE
Confidence 455555443 33444455566 899999999999 99999999999999999999999777689999999998776
Q ss_pred ecCCc
Q 037406 84 AKEAK 88 (162)
Q Consensus 84 ~N~~~ 88 (162)
.+.+.
T Consensus 116 ~~~~~ 120 (202)
T cd06433 116 VDENG 120 (202)
T ss_pred EcCCC
Confidence 65544
No 39
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.15 E-value=4.3e-11 Score=92.23 Aligned_cols=98 Identities=26% Similarity=0.315 Sum_probs=68.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHHHHHHHHHHH-HHhhhhc-ccccCCchhHHHHHH
Q 037406 46 YVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTEARANNEAKA-ELESRLR-DAQEHETMLVQALEE 123 (162)
Q Consensus 46 ~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~~~~~~ey~~-~~~~~~~-~ai~~g~m~~gal~~ 123 (162)
||+++|||+.++||+|++++++|+ +|++++||++..+.+..+.+++.|.. +|.. ....+.. ........+.|+...
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNRGSLLTRLQDF-EYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCCCChhheeehh-hhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999999999995 99999999999887554445555543 3311 1111111 111112223377777
Q ss_pred HHhHHHHHHHHHHHHHHHhcCCC-CcchhhHHH
Q 037406 124 LRQTLSRIKQQVFALFIEIVGLN-LANLQNDVL 155 (162)
Q Consensus 124 ~r~~~~~~~~~~~~~~~~~~gf~-~~~~~~d~~ 155 (162)
+|++ ++.+.|||+ +.+++||.-
T Consensus 79 ~r~~----------~l~~vg~~~~~~~~~ED~~ 101 (193)
T PF13632_consen 79 FRRE----------ALREVGGFDDPFSIGEDMD 101 (193)
T ss_pred eeHH----------HHHHhCcccccccccchHH
Confidence 8888 777889999 889999964
No 40
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.15 E-value=6.4e-10 Score=89.21 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=63.3
Q ss_pred HHHHHHHHhcC--CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 3 EQECQRWAAKG--INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 3 ~~~v~~l~~~~--~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
.++++++.+++ ++++++..+++.| |++|+|.|++.+ +||||+++|+|.+++|++|.+++..+ .+++.++|.|.
T Consensus 55 ~~i~~~~~~~~~~~~v~~~~~~~n~G-~~~a~n~g~~~a---~g~~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~g~ 129 (243)
T PLN02726 55 QDVVKQLQKVYGEDRILLRPRPGKLG-LGTAYIHGLKHA---SGDFVVIMDADLSHHPKYLPSFIKKQ-RETGADIVTGT 129 (243)
T ss_pred HHHHHHHHHhcCCCcEEEEecCCCCC-HHHHHHHHHHHc---CCCEEEEEcCCCCCCHHHHHHHHHHH-HhcCCcEEEEc
Confidence 45677777654 4677887777777 899999999999 99999999999999999999999999 56688888886
Q ss_pred ee
Q 037406 81 WR 82 (162)
Q Consensus 81 ~~ 82 (162)
..
T Consensus 130 r~ 131 (243)
T PLN02726 130 RY 131 (243)
T ss_pred cc
Confidence 43
No 41
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.14 E-value=1.3e-10 Score=85.70 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=57.9
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
.++++++..+.+.| +++|+|.|++.+ ++||++++|+|..++|+++.+++..+..+|+++++++.
T Consensus 48 ~~~~~~~~~~~~~g-~~~a~n~~~~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~ 111 (166)
T cd04186 48 FPEVRLIRNGENLG-FGAGNNQGIREA---KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK 111 (166)
T ss_pred CCCeEEEecCCCcC-hHHHhhHHHhhC---CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc
Confidence 34688888777777 899999999999 99999999999999999999999988789999999887
No 42
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.11 E-value=3e-10 Score=83.01 Aligned_cols=78 Identities=26% Similarity=0.399 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++.+.++++++++.+.+.| +++++|.|++.+ +++|++++|+|..++|+||++++..+..+|. .++.+...
T Consensus 42 ~~~~~~~~~~~~~i~~i~~~~n~g-~~~~~n~~~~~a---~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~ 116 (169)
T PF00535_consen 42 EEILEEYAESDPNIRYIRNPENLG-FSAARNRGIKHA---KGEYILFLDDDDIISPDWLEELVEALEKNPP-DVVIGSVI 116 (169)
T ss_dssp HHHHHHHHCCSTTEEEEEHCCCSH-HHHHHHHHHHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTT-EEEEEEEE
T ss_pred cccccccccccccccccccccccc-cccccccccccc---ceeEEEEeCCCceEcHHHHHHHHHHHHhCCC-cEEEEEEE
Confidence 567788877678999999998877 899999999999 9999999999999999999999999965444 44444444
Q ss_pred eec
Q 037406 83 FAK 85 (162)
Q Consensus 83 ~~N 85 (162)
...
T Consensus 117 ~~~ 119 (169)
T PF00535_consen 117 YID 119 (169)
T ss_dssp EEE
T ss_pred Eec
Confidence 433
No 43
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.10 E-value=4e-10 Score=85.18 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=55.0
Q ss_pred HHHHHHHHhcC-CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 3 EQECQRWAAKG-INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 3 ~~~v~~l~~~~-~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
+++++++..+. .+++.+.+++...++++++|.|++.+ +||||+++|+|..++|+||++++..+ ++++.+++++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a---~g~~i~~lD~D~~~~~~~l~~~~~~~--~~~~~v~g~~~ 115 (182)
T cd06420 41 KELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAA---KGDYLIFIDGDCIPHPDFIADHIELA--EPGVFLSGSRV 115 (182)
T ss_pred HHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHh---cCCEEEEEcCCcccCHHHHHHHHHHh--CCCcEEeccee
Confidence 34566665532 23444444433324899999999999 99999999999999999999999987 67776655544
No 44
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.03 E-value=1.4e-09 Score=88.81 Aligned_cols=76 Identities=21% Similarity=0.288 Sum_probs=63.9
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCC-CeEEEecce
Q 037406 5 ECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNS-DIALVQARW 81 (162)
Q Consensus 5 ~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp-~vg~V~~~~ 81 (162)
.++++.+..+++++++.+.|.| .|+|+|.|++.+...++|||+++|.|+.++|++|++++..++.+| +++++++..
T Consensus 36 ~~~~~~~~~~~i~~i~~~~N~G-~a~a~N~Gi~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 112 (281)
T TIGR01556 36 PLKNARLRGQKIALIHLGDNQG-IAGAQNQGLDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRF 112 (281)
T ss_pred hHHHHhccCCCeEEEECCCCcc-hHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeE
Confidence 3455555678999999988888 699999999988544689999999999999999999999996555 788887754
No 45
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.03 E-value=1.4e-09 Score=89.98 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=58.2
Q ss_pred HHHHHHHhcCCCEEEEEeCCCC---CChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHH---HHhcCCCeEEE
Q 037406 4 QECQRWAAKGINIRYESRENRT---GYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIP---YLVQNSDIALV 77 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~---G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~---~f~~dp~vg~V 77 (162)
+.+.++.++....++++.+... | ++.|+|.|++.| ++|+|+++|+|++++|+++.+++. .+..+|... +
T Consensus 50 ~~l~~~~~~~~~~~~i~~~~~~~~f~-~a~arN~g~~~A---~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~-~ 124 (281)
T PF10111_consen 50 EELKKLCEKNGFIRYIRHEDNGEPFS-RAKARNIGAKYA---RGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAF-L 124 (281)
T ss_pred HHHHHHHhccCceEEEEcCCCCCCcC-HHHHHHHHHHHc---CCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCce-E
Confidence 4566777765555577665433 4 899999999999 999999999999999999999999 564444333 3
Q ss_pred ecceeeecCC
Q 037406 78 QARWRFAKEA 87 (162)
Q Consensus 78 ~~~~~~~N~~ 87 (162)
..+..+.+..
T Consensus 125 ~~p~~yl~~~ 134 (281)
T PF10111_consen 125 VYPCLYLSEE 134 (281)
T ss_pred EEeeeeccch
Confidence 3444555443
No 46
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.01 E-value=1.1e-08 Score=79.90 Aligned_cols=76 Identities=20% Similarity=0.269 Sum_probs=61.8
Q ss_pred HHHHHHHHhcCCC-EEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 3 EQECQRWAAKGIN-IRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 3 ~~~v~~l~~~~~~-v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
.++++++.++++. +++++.+.+.| |++|+|.|++.+ ++|||+++|+|..++|+++.+++..+. ++...+|.|..
T Consensus 45 ~~~~~~~~~~~~~~i~~i~~~~n~G-~~~a~~~g~~~a---~gd~i~~ld~D~~~~~~~l~~l~~~~~-~~~~~~v~g~r 119 (211)
T cd04188 45 AEVARKLARKNPALIRVLTLPKNRG-KGGAVRAGMLAA---RGDYILFADADLATPFEELEKLEEALK-TSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHHHhCCCcEEEEEcccCCC-cHHHHHHHHHHh---cCCEEEEEeCCCCCCHHHHHHHHHHHh-ccCCcEEEEEe
Confidence 4567777776665 48888877788 899999999999 999999999999999999999999973 44555666654
Q ss_pred ee
Q 037406 82 RF 83 (162)
Q Consensus 82 ~~ 83 (162)
..
T Consensus 120 ~~ 121 (211)
T cd04188 120 AH 121 (211)
T ss_pred ec
Confidence 33
No 47
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.99 E-value=7.7e-09 Score=81.14 Aligned_cols=73 Identities=15% Similarity=0.269 Sum_probs=56.0
Q ss_pred HHHHHHHhc--CCCEEEEEeCC----CCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEE
Q 037406 4 QECQRWAAK--GINIRYESREN----RTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALV 77 (162)
Q Consensus 4 ~~v~~l~~~--~~~v~~i~~~~----~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V 77 (162)
++++++.++ .++++++..+. +.| .+.|+|.|++.+ +||||+++|+|..++|++|.+++..+.++|. .+|
T Consensus 43 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~~a~N~g~~~a---~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~-~~v 117 (219)
T cd06913 43 EIIEKWRKKLEDSGVIVLVGSHNSPSPKG-VGYAKNQAIAQS---SGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SII 117 (219)
T ss_pred HHHHHHHHhCcccCeEEEEecccCCCCcc-HHHHHHHHHHhc---CCCEEEEECCCccCChhHHHHHHHHHHhCCC-cEE
Confidence 566777664 34677775432 245 788999999999 9999999999999999999999888866665 355
Q ss_pred ecce
Q 037406 78 QARW 81 (162)
Q Consensus 78 ~~~~ 81 (162)
.++.
T Consensus 118 ~~~~ 121 (219)
T cd06913 118 GCQV 121 (219)
T ss_pred EEEE
Confidence 5543
No 48
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.94 E-value=5.8e-09 Score=88.37 Aligned_cols=72 Identities=19% Similarity=0.265 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
.++++++.++++++++++.+ |.| .++|+|.|++.+ +||||+++|+|+.+.|+++++++..++ +++..+|.+.
T Consensus 50 ~~i~~~~~~~~~~i~vi~~~-n~G-~~~arN~gl~~a---~g~yi~flD~DD~~~p~~l~~l~~~~~-~~~~dvv~~~ 121 (328)
T PRK10073 50 VEIAKHYAENYPHVRLLHQA-NAG-VSVARNTGLAVA---TGKYVAFPDADDVVYPTMYETLMTMAL-EDDLDVAQCN 121 (328)
T ss_pred HHHHHHHHhhCCCEEEEECC-CCC-hHHHHHHHHHhC---CCCEEEEECCCCccChhHHHHHHHHHH-hCCCCEEEEc
Confidence 46788898889999999754 666 899999999999 999999999999999999999999884 4444444443
No 49
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.91 E-value=9.1e-09 Score=79.37 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=62.9
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEeccee
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWR 82 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~ 82 (162)
.++++++.++.+ +++++.+.+.| .+.++|.|++.+...++||++++|+|++++|++|++++..+ .+|+++++.+...
T Consensus 41 ~~~~~~~~~~~~-i~~~~~~~n~g-~~~~~n~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~-~~~~~~~~~~~~~ 117 (202)
T cd04185 41 AEWLTSLGDLDN-IVYLRLPENLG-GAGGFYEGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYA-DKDNPQFLAPLVL 117 (202)
T ss_pred HHHHHHhcCCCc-eEEEECccccc-hhhHHHHHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHH-hcCCceEecceeE
Confidence 345666655443 78888888888 68889999987643379999999999999999999999999 4899999988654
Q ss_pred e
Q 037406 83 F 83 (162)
Q Consensus 83 ~ 83 (162)
.
T Consensus 118 ~ 118 (202)
T cd04185 118 D 118 (202)
T ss_pred c
Confidence 3
No 50
>PLN02189 cellulose synthase
Probab=98.90 E-value=3.1e-09 Score=100.64 Aligned_cols=74 Identities=27% Similarity=0.449 Sum_probs=64.1
Q ss_pred CCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCCCCC-hHHHHHHHHHHhcCC----CeEEEecceee
Q 037406 14 INIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDFRLE-PDYLRRAIPYLVQNS----DIALVQARWRF 83 (162)
Q Consensus 14 ~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~~~~-pd~L~~lv~~f~~dp----~vg~V~~~~~~ 83 (162)
|++.|+.|++++|+ ||||||..+..+ ...+++||+.+|+|+.+. |++|++.+.+| -|| ++++||.||+|
T Consensus 498 P~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCff-lDp~~g~~vAfVQFPQrF 576 (1040)
T PLN02189 498 PRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFL-MDPQIGRKVCYVQFPQRF 576 (1040)
T ss_pred ceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhh-cCCccCceeEEEeCcccc
Confidence 67999999998874 999999999543 233899999999999995 69999999999 688 89999999999
Q ss_pred ecCCc
Q 037406 84 AKEAK 88 (162)
Q Consensus 84 ~N~~~ 88 (162)
.|.+.
T Consensus 577 ~~i~k 581 (1040)
T PLN02189 577 DGIDT 581 (1040)
T ss_pred CCCCC
Confidence 98644
No 51
>PLN02195 cellulose synthase A
Probab=98.89 E-value=3e-09 Score=100.20 Aligned_cols=75 Identities=31% Similarity=0.445 Sum_probs=63.5
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCCCCCh-HHHHHHHHHHhcCC----CeEEEeccee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDFRLEP-DYLRRAIPYLVQNS----DIALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~~~~p-d~L~~lv~~f~~dp----~vg~V~~~~~ 82 (162)
-|++.|+.|++++|+ ||||+|..+..+ ...+++||+.+|+|+.+.+ ++|++.+.+| .|| ++++||.||.
T Consensus 418 lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~-~D~~~g~~va~VQ~PQ~ 496 (977)
T PLN02195 418 LPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFL-MDPVVGRDVCYVQFPQR 496 (977)
T ss_pred CceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhc-cCcccCCeeEEEcCCcc
Confidence 378999999998875 999999999754 1337999999999976655 7999999999 688 6789999999
Q ss_pred eecCCc
Q 037406 83 FAKEAK 88 (162)
Q Consensus 83 ~~N~~~ 88 (162)
|+|.+.
T Consensus 497 F~~i~~ 502 (977)
T PLN02195 497 FDGIDR 502 (977)
T ss_pred cCCCCC
Confidence 998643
No 52
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.88 E-value=9.7e-09 Score=79.85 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=70.4
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHHH
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTEA 93 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~~ 93 (162)
++++++. .+.| +++++|.|++.+ ++|||+++|+|+.++|+++++++..+ .++...++.....+.+.. .....
T Consensus 49 ~~~~~~~--~~~g-~~~a~n~g~~~a---~~~~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~~-~~~~~ 120 (221)
T cd02522 49 AGVVVIS--SPKG-RARQMNAGAAAA---RGDWLLFLHADTRLPPDWDAAIIETL-RADGAVAGAFRLRFDDPG-PRLRL 120 (221)
T ss_pred CCeEEEe--CCcC-HHHHHHHHHHhc---cCCEEEEEcCCCCCChhHHHHHHHHh-hcCCcEEEEEEeeecCCc-cchhh
Confidence 4555553 3456 899999999999 99999999999999999999998887 455554444443333322 22111
Q ss_pred HHHHHHHHHHhhhhccc-ccCCchhHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcchhhHH
Q 037406 94 RANNEAKAELESRLRDA-QEHETMLVQALEELRQTLSRIKQQVFALFIEIVGLNLANLQNDV 154 (162)
Q Consensus 94 ~~~~ey~~~~~~~~~~a-i~~g~m~~gal~~~r~~~~~~~~~~~~~~~~~~gf~~~~~~~d~ 154 (162)
. ++..+........ ....+| .+|+. ++.++|||++....||.
T Consensus 121 ~---~~~~~~~~~~~~~~~~~~~~------~~r~~----------~~~~~G~fd~~~~~ED~ 163 (221)
T cd02522 121 L---ELGANLRSRLFGLPYGDQGL------FIRRE----------LFEELGGFPELPLMEDV 163 (221)
T ss_pred h---hhcccceecccCCCcCCceE------EEEHH----------HHHHhCCCCccccccHH
Confidence 1 1111111100011 111122 34555 77789999999988885
No 53
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=84.94 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHh--cCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 5 ECQRWAA--KGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 5 ~v~~l~~--~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
+++++.+ .++++++++.+.+.| ++.|+|.|++.+ +||||+++|+|..++|++|++++.++...+..+++.+..
T Consensus 49 ~~~~~~~~~~~~ri~~i~~~~n~G-~~~a~N~gi~~a---~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~ 123 (279)
T PRK10018 49 QLQQYVTALNDPRITYIHNDINSG-ACAVRNQAIMLA---QGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYAND 123 (279)
T ss_pred HHHHHHHHcCCCCEEEEECCCCCC-HHHHHHHHHHHc---CCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccc
Confidence 4455544 467899998887777 899999999999 999999999999999999999999986657777776653
No 54
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.82 E-value=5.9e-08 Score=82.47 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=64.0
Q ss_pred HHHHHHHhcC----CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhc--CCCeEEE
Q 037406 4 QECQRWAAKG----INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQ--NSDIALV 77 (162)
Q Consensus 4 ~~v~~l~~~~----~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~--dp~vg~V 77 (162)
++++++.+++ +++++++.+.|.| |++|+|.|++.+ +||||+++|+|..++|+.+.+++..+.. ++++++|
T Consensus 123 ~i~~~~~~~~~~~~~~i~vi~~~~N~G-~~~A~~~Gi~~a---~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV 198 (333)
T PTZ00260 123 KVAKDFWRQNINPNIDIRLLSLLRNKG-KGGAVRIGMLAS---RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIV 198 (333)
T ss_pred HHHHHHHHhcCCCCCcEEEEEcCCCCC-hHHHHHHHHHHc---cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceE
Confidence 4566666543 4699998888888 999999999999 9999999999999999999999999854 5788899
Q ss_pred ecceee
Q 037406 78 QARWRF 83 (162)
Q Consensus 78 ~~~~~~ 83 (162)
.|....
T Consensus 199 ~GsR~~ 204 (333)
T PTZ00260 199 FGSRNH 204 (333)
T ss_pred Eeeccc
Confidence 887543
No 55
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=98.82 E-value=7.3e-09 Score=98.47 Aligned_cols=75 Identities=28% Similarity=0.437 Sum_probs=64.2
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCCCCC-hHHHHHHHHHHhcCCC----eEEEeccee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDFRLE-PDYLRRAIPYLVQNSD----IALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~~~~-pd~L~~lv~~f~~dp~----vg~V~~~~~ 82 (162)
-|++.|+.|++++|+ ||||||..+..+ ...+++||+.+|+|+.+. |+++++.+.+| -||+ +++||.||+
T Consensus 515 lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~-lDp~~g~~vafVQFPQr 593 (1079)
T PLN02638 515 LPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFL-MDPNLGKSVCYVQFPQR 593 (1079)
T ss_pred ccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhh-cCcccCCeeEEecCCcc
Confidence 378899999998874 999999999543 234899999999998776 99999999999 6886 889999999
Q ss_pred eecCCc
Q 037406 83 FAKEAK 88 (162)
Q Consensus 83 ~~N~~~ 88 (162)
|.|.+.
T Consensus 594 F~~i~k 599 (1079)
T PLN02638 594 FDGIDR 599 (1079)
T ss_pred cCCCCC
Confidence 998643
No 56
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.79 E-value=1e-08 Score=91.55 Aligned_cols=88 Identities=22% Similarity=0.335 Sum_probs=76.0
Q ss_pred HHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeec
Q 037406 6 CQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAK 85 (162)
Q Consensus 6 v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N 85 (162)
|++...+ -+|-|.+|.+|.|-|+||+..-... +++.|+|++++|||+++.+|.+.++++.|++||+.|.+|+-....|
T Consensus 205 ~~e~~g~-~~ifYRrRr~n~~RKaGNIaDfcrR-wG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~g 282 (736)
T COG2943 205 CRELGGE-GNIFYRRRRRNVKRKAGNIADFCRR-WGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASG 282 (736)
T ss_pred HHHhCCC-CceeeehHhhhhcccccCHHHHHHH-hCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcC
Confidence 4444332 4677777777878899999999999 6889999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHH
Q 037406 86 EAKELTEARA 95 (162)
Q Consensus 86 ~~~~l~~~~~ 95 (162)
.++...+.|.
T Consensus 283 g~TL~AR~qQ 292 (736)
T COG2943 283 GDTLYARCQQ 292 (736)
T ss_pred cchHHHHHHH
Confidence 9887777764
No 57
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=98.75 E-value=1.8e-07 Score=79.24 Aligned_cols=72 Identities=14% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHHHHhc-CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 4 QECQRWAAK-GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 4 ~~v~~l~~~-~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
++++++.++ +++++.+..+++.| |++|+|.|++++ +|||++++|||.+.+|+++.+++..++. +..+|.+..
T Consensus 54 ~il~~~~~~~~~~v~~i~~~~n~G-~~~A~~~G~~~A---~gd~vv~~DaD~q~~p~~i~~l~~~~~~--~~DvV~~~r 126 (325)
T PRK10714 54 EMLVEAAQAPDSHIVAILLNRNYG-QHSAIMAGFSHV---TGDLIITLDADLQNPPEEIPRLVAKADE--GYDVVGTVR 126 (325)
T ss_pred HHHHHHHhhcCCcEEEEEeCCCCC-HHHHHHHHHHhC---CCCEEEEECCCCCCCHHHHHHHHHHHHh--hCCEEEEEE
Confidence 455666554 56777777777777 999999999999 9999999999999999999999999953 345676643
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.68 E-value=2.3e-07 Score=65.92 Aligned_cols=73 Identities=27% Similarity=0.386 Sum_probs=58.1
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 4 QECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
+.+.++......+.++..+.+.| +++++|.+++.+ ++|+++++|+|..+.|+++..++..+..+++.+++++.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~---~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (156)
T cd00761 42 EILEEYAKKDPRVIRVINEENQG-LAAARNAGLKAA---RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP 114 (156)
T ss_pred HHHHHHHhcCCCeEEEEecCCCC-hHHHHHHHHHHh---cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc
Confidence 34444444334456666665555 899999999999 99999999999999999999996666688999999886
No 59
>PLN02248 cellulose synthase-like protein
Probab=98.65 E-value=3.5e-08 Score=94.04 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=63.0
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcC---CCeEEEecceee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQN---SDIALVQARWRF 83 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~d---p~vg~V~~~~~~ 83 (162)
-|.+.|+.|++++|+ ||||||.-+..+ ...+++||+.+|+|+.+ +|.+|++.+.+| -| +++++||.||+|
T Consensus 584 lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~-lD~~g~~vAfVQFPQrF 662 (1135)
T PLN02248 584 LPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFM-MDRGGDRICYVQFPQRF 662 (1135)
T ss_pred cceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchhe-ecCCCCceEEEcCCccc
Confidence 478999999998774 999999877632 23389999999999886 567999999999 56 799999999999
Q ss_pred ecCCc
Q 037406 84 AKEAK 88 (162)
Q Consensus 84 ~N~~~ 88 (162)
+|.+.
T Consensus 663 ~~I~k 667 (1135)
T PLN02248 663 EGIDP 667 (1135)
T ss_pred CCCCC
Confidence 98643
No 60
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.58 E-value=9.8e-08 Score=79.60 Aligned_cols=72 Identities=24% Similarity=0.355 Sum_probs=61.3
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeec
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAK 85 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N 85 (162)
.++++++..++|.|+ |++.|.|++.+..+..+|+++++-|..++|++|++++..++.+|.++++++......
T Consensus 55 ~~~v~~i~~~~NlG~-agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~ 126 (305)
T COG1216 55 FPNVRLIENGENLGF-AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYD 126 (305)
T ss_pred CCcEEEEEcCCCccc-hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCC
Confidence 689999999999997 888999999983222239999999999999999999999998999999988765443
No 61
>PLN02436 cellulose synthase A
Probab=98.55 E-value=1.6e-07 Score=89.46 Aligned_cols=75 Identities=29% Similarity=0.420 Sum_probs=64.8
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCC----CeEEEeccee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNS----DIALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp----~vg~V~~~~~ 82 (162)
-|++.|+.|++++|+ ||||+|..+..+ ...++.||+-+|+|. +-.|+++++.+.+| -|| ++++||.||+
T Consensus 531 LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfl-lD~~~g~~~afVQFPQr 609 (1094)
T PLN02436 531 LPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQFPQR 609 (1094)
T ss_pred CceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhh-cCCccCCeeEEEcCCcc
Confidence 378999999998874 999999998754 244899999999997 77899999999999 577 8999999999
Q ss_pred eecCCc
Q 037406 83 FAKEAK 88 (162)
Q Consensus 83 ~~N~~~ 88 (162)
|.|.+.
T Consensus 610 F~gi~k 615 (1094)
T PLN02436 610 FDGIDR 615 (1094)
T ss_pred cCCCCC
Confidence 988644
No 62
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.54 E-value=2.1e-07 Score=78.42 Aligned_cols=55 Identities=25% Similarity=0.393 Sum_probs=49.5
Q ss_pred CCCCCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcCCCeEEEecc
Q 037406 22 ENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 22 ~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
+.+.| |++|+|.|++.+ ++|||+++|+|.+ ++|++|.+++.++..+|++++|.+.
T Consensus 98 ~~n~G-kg~A~~~g~~~a---~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~ 153 (306)
T PRK13915 98 PPRPG-KGEALWRSLAAT---TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAF 153 (306)
T ss_pred ccCCC-HHHHHHHHHHhc---CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 34556 999999999999 9999999999997 8999999999999668999999884
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.50 E-value=1e-06 Score=71.82 Aligned_cols=70 Identities=11% Similarity=0.190 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEec
Q 037406 4 QECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~ 79 (162)
++++++..+ .++++++.+ +.| +++|+|.|++.+ +||||+++|+|+.+.|+.++.+......+|...++++
T Consensus 49 ~i~~~~~~~-~~i~~i~~~-~~G-~~~A~N~Gi~~a---~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~ 118 (248)
T PRK10063 49 EFLENLNGI-FNLRFVSEP-DNG-IYDAMNKGIAMA---QGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGD 118 (248)
T ss_pred HHHHHhccc-CCEEEEECC-CCC-HHHHHHHHHHHc---CCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEee
Confidence 456666443 358888754 557 899999999999 9999999999999999987655444433444444444
No 64
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=98.48 E-value=2e-07 Score=86.00 Aligned_cols=75 Identities=33% Similarity=0.452 Sum_probs=64.1
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCC----eEEEeccee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSD----IALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~----vg~V~~~~~ 82 (162)
=|++.|+.|++++|+ ||||+|.-+..+ ...++.||+.+|+|. ...|+.+++.+.+| -||+ +++||.||+
T Consensus 165 lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~-~d~~~g~~~~~vQfpq~ 243 (720)
T PF03552_consen 165 LPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFF-MDPKIGKKIAFVQFPQR 243 (720)
T ss_pred CCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhh-ccCCCCCeeEEEeCCce
Confidence 378999999998774 999999987643 244899999999997 66799999999999 6887 999999999
Q ss_pred eecCCc
Q 037406 83 FAKEAK 88 (162)
Q Consensus 83 ~~N~~~ 88 (162)
|.|.+.
T Consensus 244 f~~i~~ 249 (720)
T PF03552_consen 244 FDGIDK 249 (720)
T ss_pred eCCCCc
Confidence 998654
No 65
>PLN02400 cellulose synthase
Probab=98.41 E-value=4.9e-07 Score=86.30 Aligned_cols=75 Identities=27% Similarity=0.385 Sum_probs=64.2
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeEEEeccee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNS----DIALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp----~vg~V~~~~~ 82 (162)
=|++.|+.|++++|+ ||||+|.-+..+ ...++.||+-+|+|... .|.++++.+.+| -|| ++++||.||+
T Consensus 522 LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~-lD~~~g~~~afVQFPQr 600 (1085)
T PLN02400 522 LPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAIGKKTCYVQFPQR 600 (1085)
T ss_pred CceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhhe-eccCCCceeEEEeCCcc
Confidence 378999999999874 999999988843 24489999999999777 899999999999 576 7999999999
Q ss_pred eecCCc
Q 037406 83 FAKEAK 88 (162)
Q Consensus 83 ~~N~~~ 88 (162)
|.|.+.
T Consensus 601 F~gi~~ 606 (1085)
T PLN02400 601 FDGIDL 606 (1085)
T ss_pred cCCCCC
Confidence 987643
No 66
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=98.33 E-value=3.4e-06 Score=67.20 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEe
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQ 78 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~ 78 (162)
.++++++. .+.| .+.++|.|++.+ ++|||+++|+|..++|++++++...+..+|..+...
T Consensus 47 ~~~~v~~~-~~~g-~~~~~n~~~~~a---~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~~ 106 (229)
T cd02511 47 YGAKVYQR-WWDG-FGAQRNFALELA---TNDWVLSLDADERLTPELADEILALLATDDYDGYYV 106 (229)
T ss_pred cCCEEEEC-CCCC-hHHHHHHHHHhC---CCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEEE
Confidence 35677776 5566 788999999999 999999999999999999999999997777644433
No 67
>PLN02190 cellulose synthase-like protein
Probab=98.28 E-value=1.7e-06 Score=80.23 Aligned_cols=72 Identities=31% Similarity=0.405 Sum_probs=60.3
Q ss_pred CCCEEEEEeCCCCC----ChHHHHHHHHHhc-cCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCC-----CeEEEecce
Q 037406 13 GINIRYESRENRTG----YKAGALKEGLKRS-YVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNS-----DIALVQARW 81 (162)
Q Consensus 13 ~~~v~~i~~~~~~G----~KagAlN~gl~~a-~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp-----~vg~V~~~~ 81 (162)
=|++.|+.|++++| +||||+|.-+..+ ...++.||+-+|+|... .|+.+++.+.+|. || ++++||.||
T Consensus 251 lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~l-d~~~~~~~~~fVQfPQ 329 (756)
T PLN02190 251 VPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFL-QKSKNSNHCAFVQFPQ 329 (756)
T ss_pred CceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhc-CCCCCCCeeEEEeCch
Confidence 37899999998877 4999999988653 23489999999999755 7999999999994 43 589999999
Q ss_pred eeec
Q 037406 82 RFAK 85 (162)
Q Consensus 82 ~~~N 85 (162)
.+.+
T Consensus 330 ~F~D 333 (756)
T PLN02190 330 EFYD 333 (756)
T ss_pred hhcc
Confidence 8864
No 68
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=98.24 E-value=1.5e-06 Score=82.88 Aligned_cols=75 Identities=28% Similarity=0.441 Sum_probs=63.6
Q ss_pred CCCEEEEEeCCCCCC----hHHHHHHHHHhc-cCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeEEEeccee
Q 037406 13 GINIRYESRENRTGY----KAGALKEGLKRS-YVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNS----DIALVQARWR 82 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~----KagAlN~gl~~a-~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp----~vg~V~~~~~ 82 (162)
=|++.|+.|++++|+ ||||+|.-+..+ ...++.||+-+|+|... .|..+++.+-+| -|| ++++||-||+
T Consensus 453 lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~-lD~~~g~~~afVQFPQr 531 (1044)
T PLN02915 453 LPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFL-MDPQLGKKLCYVQFPQR 531 (1044)
T ss_pred cceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhhceee-ecCCCCCeeEEEeCCcc
Confidence 378999999999874 999999988764 34589999999999655 799999999999 566 7999999999
Q ss_pred eecCCc
Q 037406 83 FAKEAK 88 (162)
Q Consensus 83 ~~N~~~ 88 (162)
|.|.+.
T Consensus 532 F~gidk 537 (1044)
T PLN02915 532 FDGIDR 537 (1044)
T ss_pred cCCCCC
Confidence 987643
No 69
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.00 E-value=4.3e-06 Score=75.37 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=61.9
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHHHHHHHHHHHHHhhh-hcccccCC-chhHH
Q 037406 42 KHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTEARANNEAKAELESR-LRDAQEHE-TMLVQ 119 (162)
Q Consensus 42 ~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~~~~~~ey~~~~~~~-~~~ai~~g-~m~~g 119 (162)
+.+|||+.+|||+.+.|+.+.+++..|.+||++++|+|.....|...++.......||....+.. ..+.+.+. +.+.|
T Consensus 200 ~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~ish~l~Ka~Es~fG~VtCLPG 279 (527)
T PF03142_consen 200 DFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAISHHLQKAFESVFGSVTCLPG 279 (527)
T ss_pred cceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHHHHHHHHHHHHhCceeecCC
Confidence 36899999999999999999999999989999999999988889888864444444675554443 11223222 22227
Q ss_pred HHHHHHh
Q 037406 120 ALEELRQ 126 (162)
Q Consensus 120 al~~~r~ 126 (162)
+...+|=
T Consensus 280 cfsmyR~ 286 (527)
T PF03142_consen 280 CFSMYRI 286 (527)
T ss_pred cceeeee
Confidence 6666663
No 70
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=97.91 E-value=8.4e-05 Score=59.29 Aligned_cols=73 Identities=19% Similarity=0.341 Sum_probs=61.5
Q ss_pred HHHHHHHh--cCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 4 QECQRWAA--KGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 4 ~~v~~l~~--~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
++++.+++ ..++|.+..|.+..| -..|.-+|+.++ +|+|++++|||..-+|.++.++++.. ++.+.++|.|..
T Consensus 51 ~~a~~L~k~yg~d~i~l~pR~~klG-LgtAy~hgl~~a---~g~fiviMDaDlsHhPk~ipe~i~lq-~~~~~div~GTR 125 (238)
T KOG2978|consen 51 EVAKALQKIYGEDNILLKPRTKKLG-LGTAYIHGLKHA---TGDFIVIMDADLSHHPKFIPEFIRLQ-KEGNYDIVLGTR 125 (238)
T ss_pred HHHHHHHHHhCCCcEEEEeccCccc-chHHHHhhhhhc---cCCeEEEEeCccCCCchhHHHHHHHh-hccCcceeeeee
Confidence 45666664 367899998887777 577899999999 99999999999999999999999987 666778888864
No 71
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=97.85 E-value=4.5e-05 Score=61.37 Aligned_cols=60 Identities=15% Similarity=0.384 Sum_probs=45.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeEEEe
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNSDIALVQ 78 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp~vg~V~ 78 (162)
-+.++.+++..+ -+.+.|.|++.+ +++|++++.-|..+ .++|+..++..|+++|++|+++
T Consensus 30 ~i~i~~~~~~~s-~~~~yN~a~~~a---~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iG 90 (217)
T PF13712_consen 30 LIEIDNVRNAKS-MAAAYNEAMEKA---KAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIG 90 (217)
T ss_dssp EEEEE-SSS-S--TTTHHHHHGGG-----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEE
T ss_pred EEEEeccCCCcC-HHHHHHHHHHhC---CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEE
Confidence 456666554455 688999999999 99999999999766 6999999999998899987776
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.75 E-value=0.00015 Score=62.90 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=67.2
Q ss_pred HHHHHHHhcCCCE--EEEEeCCCCC--ChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEec
Q 037406 4 QECQRWAAKGINI--RYESRENRTG--YKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 4 ~~v~~l~~~~~~v--~~i~~~~~~G--~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~ 79 (162)
+.|+++-+++|+| +++--....| .|-+|+--|.+.+ ++|+|.|.|+|..+.||.+..+...|.++.+.|.|++
T Consensus 130 ~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a---~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq 206 (431)
T KOG2547|consen 130 EVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAA---KYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQ 206 (431)
T ss_pred HHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHh---cCCEEEEecCCeeecCchHHHHHHhhhcccceeeecC
Confidence 5688888888875 4443333333 3777777799999 9999999999999999999999999988899999998
Q ss_pred ceeeecCCcc
Q 037406 80 RWRFAKEAKE 89 (162)
Q Consensus 80 ~~~~~N~~~~ 89 (162)
-..+..++..
T Consensus 207 ~py~~dr~Gf 216 (431)
T KOG2547|consen 207 TPYCKDRQGF 216 (431)
T ss_pred Cceeeccccc
Confidence 8777776653
No 73
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=97.69 E-value=6e-05 Score=71.06 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=67.1
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeecCCccHHHHHHHHHHHHHHhhhh
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAKEAKELTEARANNEAKAELESRL 107 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~l~~~~~~~ey~~~~~~~~ 107 (162)
+--.++...... .+.-+||.++|+|+.+.|+.|.+++..|+.||+||+++| ++.|...++..+...-||........
T Consensus 426 ~r~~~y~~~~~L-~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG--~I~~~~~~w~v~~Q~FEY~Ish~l~K 502 (862)
T KOG2571|consen 426 HRWVMYTAFKAL-MPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG--RILNKGGSWVVAYQNFEYAISHNLQK 502 (862)
T ss_pred HHHHHHHHHHHh-cCcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc--ccccCCCceEEeHHHHHHHHHHHHHH
Confidence 444556666664 667789999999999999999999999988999999999 45666666543344446655554431
Q ss_pred c-ccccC-CchhHHHHHHHHh
Q 037406 108 R-DAQEH-ETMLVQALEELRQ 126 (162)
Q Consensus 108 ~-~ai~~-g~m~~gal~~~r~ 126 (162)
. +...+ -+.+.|++...|=
T Consensus 503 a~ESvFG~VsclPGcfs~yR~ 523 (862)
T KOG2571|consen 503 ATESVFGCVSCLPGCFSLYRA 523 (862)
T ss_pred hhhhhceeEEecCchhHHHHH
Confidence 1 11222 2333399999996
No 74
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.49 E-value=0.00062 Score=48.81 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.++++++..+.+++.....+.+.| ++.|+|.++..+ .+|+++++|+|.+ +|+.+..+....
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~---~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 47 TEIAIEYGAKDVRVIRLINERNGG-LGAARNAGLEYA---RGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHHHHHHhhhcceEEEeecccCCC-hHHHHHhhHHhc---cCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 356677766544566665566667 899999999999 8999999999999 988888855544
No 75
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=97.46 E-value=0.00073 Score=57.95 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=43.0
Q ss_pred HHHHHHHhccCCCccEEEEEcCCCCCChH---HHHHHHHHHhcCCCeEEEecc
Q 037406 31 ALKEGLKRSYVKHCEYVAIFDVDFRLEPD---YLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 31 AlN~gl~~a~~~~ge~i~i~DAD~~~~pd---~L~~lv~~f~~dp~vg~V~~~ 80 (162)
|+|.+++.. ++++++|+|.|.++.|| +++++++.++.||.+.+|++-
T Consensus 88 aln~vF~~~---~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~ 137 (334)
T cd02514 88 ALTQTFNLF---GYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAW 137 (334)
T ss_pred HHHHHHHhc---CCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEee
Confidence 789988887 89999999999999999 568999999899999999984
No 76
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.033 Score=51.06 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=62.8
Q ss_pred HHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeec
Q 037406 6 CQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAK 85 (162)
Q Consensus 6 v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N 85 (162)
++++.++...+++++.+++.| +..|+..|-..| +||+++|+||=+.....||+-++.... ...-.+|++-....+
T Consensus 193 Ld~y~k~~~~v~i~r~~~R~G-LIrARl~GA~~A---~geVL~FLDsHcE~n~gWLePLL~~I~-~~r~tvv~PvID~Id 267 (578)
T KOG3736|consen 193 LEEYVKRFSKVRILRTKKREG-LIRARLLGASMA---TGEVLTFLDSHCEVNVGWLEPLLARIA-EDRKTVVCPVIDVID 267 (578)
T ss_pred hHHHHhhhcceeEEeecchhh-hHHHHhhhhhhh---hchheeeeecceeEecCcchHHHHHhh-hcCceeecceEEeec
Confidence 444444445599999998888 899999999999 999999999999999999999999994 445556666666665
Q ss_pred CCc
Q 037406 86 EAK 88 (162)
Q Consensus 86 ~~~ 88 (162)
.++
T Consensus 268 ~~t 270 (578)
T KOG3736|consen 268 DNT 270 (578)
T ss_pred CcC
Confidence 544
No 77
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=95.12 E-value=0.072 Score=45.04 Aligned_cols=61 Identities=21% Similarity=0.340 Sum_probs=48.3
Q ss_pred HHHHHHHh--cCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCC--CCC-ChHHHHHHHHHH
Q 037406 4 QECQRWAA--KGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVD--FRL-EPDYLRRAIPYL 68 (162)
Q Consensus 4 ~~v~~l~~--~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD--~~~-~pd~L~~lv~~f 68 (162)
+.+-+++. .+.+++++....|+| |.||.-.|+-.+ +|+++++.||| +.+ +-+.|++.+...
T Consensus 120 ~~a~k~s~K~~~d~irV~~l~~nrg-KGgAvR~g~l~~---rG~~ilfadAdGaTkf~d~ekLe~al~~~ 185 (323)
T KOG2977|consen 120 EVALKFSRKLGDDNIRVIKLKKNRG-KGGAVRKGMLSS---RGQKILFADADGATKFADLEKLEKALNDK 185 (323)
T ss_pred HHHHHHHHHcCcceEEEeehhccCC-CCcceehhhHhc---cCceEEEEcCCCCccCCCHHHHHHHHHhh
Confidence 34556663 346899999988888 999999999999 99999999999 444 457788777754
No 78
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.78 E-value=0.066 Score=47.34 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=48.0
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCe
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDI 74 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~v 74 (162)
.+++++.+++.| --.|+..|.+.+ .||+++++||-+.+..+||--++++...|-.|
T Consensus 216 lVkV~Rne~REG-LI~aRSiGA~~a---tGeV~ifLDAHCEVntNWlpPLlAPI~rdRtv 271 (603)
T KOG3737|consen 216 LVKVFRNERREG-LIQARSIGAQKA---TGEVLIFLDAHCEVNTNWLPPLLAPISRDRTV 271 (603)
T ss_pred EEEEEecchhhh-hhhhhccchhhc---cccEEEEEecceeeecccccccccccccCceE
Confidence 488888887778 577888899998 99999999999999999999999998555443
No 79
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.12 Score=45.73 Aligned_cols=77 Identities=9% Similarity=0.127 Sum_probs=62.7
Q ss_pred HHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceeeec
Q 037406 6 CQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRFAK 85 (162)
Q Consensus 6 v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~~N 85 (162)
++.+.+ -+++++++..++.| --..++.|.+.| ++.++.|+|+-+.+..+||+-++.....|+ --+|++-..++|
T Consensus 172 ~~~L~r-i~kvr~LRN~~ReG-LirSRvrGAdvA---~a~vltFLDSHcEvN~~WLePLL~Rvaed~-trvVsPiiDvIn 245 (559)
T KOG3738|consen 172 GKLLKR-IPKVRVLRNNEREG-LIRSRVRGADVA---QATVLTFLDSHCEVNEGWLEPLLERVAEDT-TRVVSPIIDVIN 245 (559)
T ss_pred HHHHhh-hheeeeecccchhh-hhhhhccccccc---cceEEEEEecceeecchhhHHHHHHHhhcc-cceeeccccccc
Confidence 444433 47899998888888 577899999999 999999999999999999999999995554 456777778888
Q ss_pred CCc
Q 037406 86 EAK 88 (162)
Q Consensus 86 ~~~ 88 (162)
.++
T Consensus 246 ~dn 248 (559)
T KOG3738|consen 246 LDN 248 (559)
T ss_pred ccc
Confidence 765
No 80
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=93.23 E-value=0.81 Score=34.60 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=40.8
Q ss_pred CEEEEEeCCC-CCChHHHHHHHHH-hccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCCeE
Q 037406 15 NIRYESRENR-TGYKAGALKEGLK-RSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSDIA 75 (162)
Q Consensus 15 ~v~~i~~~~~-~G~KagAlN~gl~-~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~vg 75 (162)
++.++..+.. .| -.+++..|++ .. +.|+++++++|. .++|+.+++++..+..++...
T Consensus 63 ~v~~v~~~~~~~g-~~~si~~~l~~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 122 (188)
T TIGR03310 63 NITLVHNPQYAEG-QSSSIKLGLELPV---QSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEI 122 (188)
T ss_pred CeEEEECcChhcC-HHHHHHHHhcCCC---CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcE
Confidence 4666654432 34 4667888887 33 678999999998 568999999999875555533
No 81
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.10 E-value=1.3 Score=33.11 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=39.6
Q ss_pred EEEEEeCCC-CCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCC
Q 037406 16 IRYESRENR-TGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 16 v~~i~~~~~-~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~ 73 (162)
+.++..+.. .| -..++..|++.+ ....|+++++.+|. .++++.+++++..+..++.
T Consensus 64 ~~~~~~~~~~~G-~~~~i~~al~~~-~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 121 (186)
T cd04182 64 VVVVINPDWEEG-MSSSLAAGLEAL-PADADAVLILLADQPLVTAETLRALIDAFREDGA 121 (186)
T ss_pred eEEEeCCChhhC-HHHHHHHHHHhc-cccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCC
Confidence 444443322 34 567889999887 11279999999998 6789999999998843333
No 82
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=91.99 E-value=1.8 Score=33.79 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=41.8
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhc
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~ 70 (162)
.+++++..+...| .++++-.|+... ..+.+.++++++|. .+.++.+.+++..+..
T Consensus 62 ~~~~~~~~~~~~g-~~~ai~~a~~~~-~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 62 PNVEFVLQEEQLG-TGHAVKQALPAL-KDFEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred CCcEEEECCCCCC-CHHHHHHHHHhh-ccCCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 3567776655556 688899999876 21268999999998 5688999999988854
No 83
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=91.48 E-value=1.9 Score=35.25 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=47.6
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEE--cCCCCCChHHHHHHHHHH
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIF--DVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~--DAD~~~~pd~L~~lv~~f 68 (162)
++.++++.+..|+++++..+. +....++..++.....+.+++++.+ |+|.-+..||++++-.++
T Consensus 74 ~~rL~~l~~~~p~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~dFV~rlr~~a 139 (234)
T PF11316_consen 74 RERLRDLLADYPQFRIVFRPP--GPHRDAMRRAINAARRDGADPVLQFRLDDDDALHRDFVARLRRAA 139 (234)
T ss_pred HHHHHHHhccCCCcEEEecCC--chHHHHHHHHHhhhccCCCCEEEEEEECCcchhhHHHHHHHHHHH
Confidence 566777877888888887653 3345677777754434466766665 999999999999999997
No 84
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=90.74 E-value=0.99 Score=40.71 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcCC--CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHH
Q 037406 2 VEQECQRWAAKGI--NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPY 67 (162)
Q Consensus 2 i~~~v~~l~~~~~--~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~ 67 (162)
|++.++++..+++ ++.++......-.++.+|..|++.. +..+++.+.|.|..+++++|.++-..
T Consensus 300 ik~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~--~~d~L~f~~Dvd~~f~~~fL~rcR~n 365 (499)
T PF05679_consen 300 IKELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKF--PPDSLLFFCDVDMVFTSDFLNRCRMN 365 (499)
T ss_pred HHHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccC--CCCcEEEEEeCCcccCHHHHHHHHHh
Confidence 4667888888754 6788877622223788899999864 35679999999999999999998654
No 85
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=89.10 E-value=2.4 Score=31.97 Aligned_cols=49 Identities=18% Similarity=0.372 Sum_probs=38.4
Q ss_pred EEEEEeCC-CCCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHH
Q 037406 16 IRYESREN-RTGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYL 68 (162)
Q Consensus 16 v~~i~~~~-~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f 68 (162)
++++..+. ..| ..+++..|++.. +.++++++.+|.- +.++.+++++..+
T Consensus 59 ~~~v~~~~~~~G-~~~si~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 59 VPVIPDEPPGKG-PLAGILAALRAA---PADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CcEeeCCCCCCC-CHHHHHHHHHhc---CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 44454332 234 567899999988 7899999999984 6899999999987
No 86
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=88.19 E-value=4.1 Score=30.80 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhc
Q 037406 25 TGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 25 ~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~ 70 (162)
.| -.+++-.|++.. +.|+++++++|. .+.++.+++++..+..
T Consensus 73 ~g-~~~si~~al~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 73 PG-PLAGILAGLRWA---GTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred CC-CHHHHHHHHHhc---CCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 45 567888899887 789999999997 6799999999999843
No 87
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=87.86 E-value=3.5 Score=31.63 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=36.8
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.++.++..+...| -++++..+++.. ..+.++++++|.+..+++.+.+ ..+
T Consensus 70 ~~i~~~~~~~~~g-~~~al~~~~~~~---~~~~~lv~~~D~~~~~~~~~~~-~~~ 119 (217)
T cd04181 70 VNIEYVVQEEPLG-TAGAVRNAEDFL---GDDDFLVVNGDVLTDLDLSELL-RFH 119 (217)
T ss_pred ceEEEEeCCCCCc-cHHHHHHhhhhc---CCCCEEEEECCeecCcCHHHHH-HHH
Confidence 4566665544456 578899999886 7789999999999888865544 444
No 88
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=86.97 E-value=3.6 Score=31.50 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~ 73 (162)
-.+++..|++.. +.|+++++++|. .++++.+++++..+..++.
T Consensus 76 ~~~~i~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 119 (193)
T PRK00317 76 PLAGILAGLKQA---RTEWVLVVPCDTPFIPPDLVARLAQAAGKDDA 119 (193)
T ss_pred CHHHHHHHHHhc---CCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCC
Confidence 356788889876 789999999998 6699999999998743433
No 89
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=86.77 E-value=1.2 Score=37.33 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHHhccCCCccEEEEEcCCCCC-ChHHHHHHHHH
Q 037406 29 AGALKEGLKRSYVKHCEYVAIFDVDFRL-EPDYLRRAIPY 67 (162)
Q Consensus 29 agAlN~gl~~a~~~~ge~i~i~DAD~~~-~pd~L~~lv~~ 67 (162)
|.|+|..|..++.+..+||+.+|||.+- ||+.|+.++.+
T Consensus 128 AraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~ 167 (269)
T PF03452_consen 128 ARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH 167 (269)
T ss_pred HHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhC
Confidence 4788999998877789999999999554 67888888664
No 90
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=86.60 E-value=0.78 Score=38.95 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=39.9
Q ss_pred HHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhc---CCCeEEEecceeee
Q 037406 30 GALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQ---NSDIALVQARWRFA 84 (162)
Q Consensus 30 gAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~---dp~vg~V~~~~~~~ 84 (162)
--+|.|+..+ +.+|++++|+|..|.+++-+.+...... .+....|-+...+.
T Consensus 117 ~LRNvAr~~a---~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~ 171 (317)
T PF13896_consen 117 LLRNVARSGA---RTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETR 171 (317)
T ss_pred HHHHHHHHhc---CcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecc
Confidence 4589999999 9999999999999999887777666533 35566666655443
No 91
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=86.28 E-value=5.9 Score=34.79 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhc
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~ 70 (162)
+..+.++..+...| -++++..+++.. .+..|.++++++|. .+.+..+++++..+..
T Consensus 67 ~~~i~~~~~~~~~G-t~~al~~a~~~l-~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 67 DGDVSFALQEEQLG-TGHAVACAAPAL-DGFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred CCceEEEecCCCCC-HHHHHHHHHHHh-hccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 33577766555556 578898898875 22257999999998 6788999999988743
No 92
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=86.04 E-value=5.8 Score=34.48 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=38.9
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCCe
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSDI 74 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~v 74 (162)
++.++......| -++++-.+++.. ....|.++++++|. .++++.+++++.+++.+.++
T Consensus 72 ~~~~~~~~~~~G-~~~sl~~a~~~l-~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~ 130 (446)
T PRK14353 72 DAEIFVQKERLG-TAHAVLAAREAL-AGGYGDVLVLYGDTPLITAETLARLRERLADGADV 130 (446)
T ss_pred CceEEEcCCCCC-cHHHHHHHHHHH-hccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE
Confidence 444444444456 467788787764 21247788899998 78899999999977443343
No 93
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=85.59 E-value=6.4 Score=28.88 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=44.3
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcC-CCeEEEe
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQN-SDIALVQ 78 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~d-p~vg~V~ 78 (162)
.+++++..+....+-..++-.|+... . ..+.++++-+|.. ++++.+++++..+..+ +++.++.
T Consensus 58 ~~~~~v~~~~~~~G~~~sl~~a~~~~-~-~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 58 YGIKVVVDPEPGQGPLASLLAALSQL-P-SSEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp TTSEEEE-STSSCSHHHHHHHHHHTS-T-TSSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred cCceEEEeccccCChHHHHHHHHHhc-c-cCCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 35777766533233577888888874 2 6899999999995 6999999999999643 4455444
No 94
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=85.17 E-value=5.7 Score=30.48 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHh
Q 037406 16 IRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLV 69 (162)
Q Consensus 16 v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~ 69 (162)
+.+.......| .++++-.+++.. ..+.++++++|...+++ +.+++..+.
T Consensus 72 ~~~~~~~~~~G-~~~~l~~a~~~~---~~~~~lv~~~D~~~~~~-~~~~l~~~~ 120 (223)
T cd06915 72 IYYVIEPEPLG-TGGAIKNALPKL---PEDQFLVLNGDTYFDVD-LLALLAALR 120 (223)
T ss_pred EEEEECCCCCc-chHHHHHHHhhc---CCCCEEEEECCcccCCC-HHHHHHHHH
Confidence 43444333455 577888899887 67889999999988766 556666663
No 95
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=84.70 E-value=6 Score=30.83 Aligned_cols=51 Identities=22% Similarity=0.311 Sum_probs=38.7
Q ss_pred CEEEEEeCCC-CCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHh
Q 037406 15 NIRYESRENR-TGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLV 69 (162)
Q Consensus 15 ~v~~i~~~~~-~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~ 69 (162)
++.++..+.. .| -.+++-.|++.. +.++++++++|.- ++++.+++++..+.
T Consensus 67 ~~~~i~~~~~~~G-~~~si~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 67 GCHWLREPPPSQG-PLVAFAQGLPQI---KTEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred CCeEecCCCCCCC-hHHHHHHHHHhC---CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 3555544333 35 456899999987 7799999999965 58999999999874
No 96
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=84.01 E-value=8.3 Score=30.37 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCCe
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSDI 74 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~v 74 (162)
.++ +-.++... ....|.++++++|. .++++.|.+++..+..+|+.
T Consensus 76 t~~-~~~~~~~~-~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~ 121 (239)
T cd02517 76 TDR-IAEVAEKL-DADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGV 121 (239)
T ss_pred hHH-HHHHHHhc-CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 343 45556554 11238999999998 78899999999988545333
No 97
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=83.80 E-value=6.4 Score=30.64 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=35.6
Q ss_pred CCEEEEEeC-CCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 14 INIRYESRE-NRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 14 ~~v~~i~~~-~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.++.+...+ ...| -++++..++... ..+.++++.+|.+...|+.+.+..+-
T Consensus 70 ~~i~~~~~~~~~~g-~~~~l~~~~~~~---~~~~~lv~~~D~i~~~~~~~~~~~~~ 121 (221)
T cd06422 70 LRITISDEPDELLE-TGGGIKKALPLL---GDEPFLVVNGDILWDGDLAPLLLLHA 121 (221)
T ss_pred ceEEEecCCCcccc-cHHHHHHHHHhc---CCCCEEEEeCCeeeCCCHHHHHHHHH
Confidence 344444333 2345 478899999886 55889999999999988776555443
No 98
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=83.45 E-value=3.7 Score=34.83 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCC--hHHHHHHHHHhccCC-CccEEEEEcCCCCCChHHHHHHH-----HHHhcCCCeE
Q 037406 4 QECQRWAAKGINIRYESRENRTGY--KAGALKEGLKRSYVK-HCEYVAIFDVDFRLEPDYLRRAI-----PYLVQNSDIA 75 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~--KagAlN~gl~~a~~~-~ge~i~i~DAD~~~~pd~L~~lv-----~~f~~dp~vg 75 (162)
..+.++.++.+++.|+......-+ -+-..|.|...++.. ..++|+++|+|+....|-..+++ ..+..+=+ +
T Consensus 52 ~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~-a 130 (346)
T COG4092 52 RLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNID-A 130 (346)
T ss_pred HHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccC-c
Confidence 456777777888888876443322 133456777666211 38999999999999966666655 33322222 2
Q ss_pred EEecceeeecCCcc
Q 037406 76 LVQARWRFAKEAKE 89 (162)
Q Consensus 76 ~V~~~~~~~N~~~~ 89 (162)
..--|+.+.|...+
T Consensus 131 ~~vlPV~~LNk~~~ 144 (346)
T COG4092 131 PLVLPVYHLNKADT 144 (346)
T ss_pred ceeeeeeecchhhh
Confidence 23345667777654
No 99
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=82.93 E-value=14 Score=28.05 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=34.7
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~ 73 (162)
..+++-.|++.+...+.|+++++++|. .++++.+++++..+...|.
T Consensus 80 ~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~ 126 (190)
T TIGR03202 80 QAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPD 126 (190)
T ss_pred HHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCC
Confidence 456788888865222579999999995 4589999999999854444
No 100
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=82.46 E-value=2.6 Score=34.73 Aligned_cols=70 Identities=11% Similarity=0.060 Sum_probs=45.9
Q ss_pred HHHHHHHhcCC-CEEEEEeCCC-CCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEec
Q 037406 4 QECQRWAAKGI-NIRYESRENR-TGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 4 ~~v~~l~~~~~-~v~~i~~~~~-~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~ 79 (162)
+.++.+-.+++ +.++++.+.- .+--...|-.|.+.+ +++ ++++|+|++.+|.++++++.. ..+.++++..
T Consensus 59 ~lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~---~~~-fii~~sD~vye~~~~e~l~~a--~~~~li~d~~ 130 (239)
T COG1213 59 DLVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYM---DGR-FILVMSDHVYEPSILERLLEA--PGEGLIVDRR 130 (239)
T ss_pred HHHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhh---cCc-EEEEeCCEeecHHHHHHHHhC--cCCcEEEecc
Confidence 34455555555 7788866532 110012466678887 666 888999999999999999885 2555655544
No 101
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=81.61 E-value=9.8 Score=29.76 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=35.7
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCC-ccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEE
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKH-CEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALV 77 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~-ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V 77 (162)
.++.++..+...| -++++-.|+... + .++ +++.+|....+++...+..+...+.++.++
T Consensus 72 ~~i~~~~~~~~~g-~~~sl~~a~~~i---~~~~~-li~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 131 (236)
T cd04189 72 VRITYILQEEPLG-LAHAVLAARDFL---GDEPF-VVYLGDNLIQEGISPLVRDFLEEDADASIL 131 (236)
T ss_pred CeEEEEECCCCCC-hHHHHHHHHHhc---CCCCE-EEEECCeecCcCHHHHHHHHHhcCCceEEE
Confidence 3455554443456 478888888876 4 454 558899998888665444443333444333
No 102
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=79.87 E-value=16 Score=31.51 Aligned_cols=60 Identities=17% Similarity=0.193 Sum_probs=42.2
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCCeEEEe
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSDIALVQ 78 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~vg~V~ 78 (162)
++.++..+...| -++++..+++.. . ..|.++++++|. ...++.+++++..+.+ ..+.++.
T Consensus 65 ~i~~~~~~~~~G-~~~ai~~a~~~l-~-~~~~~lv~~~D~p~i~~~~~~~l~~~~~~-~~~~~~~ 125 (451)
T TIGR01173 65 DVNWVLQAEQLG-TGHAVLQALPFL-P-DDGDVLVLYGDVPLISAETLERLLEAHRQ-NGITLLT 125 (451)
T ss_pred CcEEEEcCCCCc-hHHHHHHHHHhc-C-CCCcEEEEECCcCCcCHHHHHHHHHHHhh-CCEEEEE
Confidence 466665544455 577888888875 1 247899999998 6789999999988743 3444443
No 103
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=79.66 E-value=17 Score=31.52 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=45.8
Q ss_pred HHHHHhcCCCEEEEEeCCC--CCC----h--H---HHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCe
Q 037406 6 CQRWAAKGINIRYESRENR--TGY----K--A---GALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDI 74 (162)
Q Consensus 6 v~~l~~~~~~v~~i~~~~~--~G~----K--a---gAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~v 74 (162)
.++++.-..+|.++..+.. .|- . + .+++..+...-...+|+|++.|+|-+|.|+.|+.+-. ....|..
T Consensus 130 ~~~f~~~~~KIiy~~l~~~~~~g~~~~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~-cd~~p~~ 208 (356)
T PF04724_consen 130 KERFAFFHDKIIYVTLDDPPEKGRKDPWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRW-CDGFPEP 208 (356)
T ss_pred HHHHHhhhcceEEEEecCcCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHh-cCCCCCe
Confidence 3444444557877765532 221 0 1 2332222222234799999999999999999987743 3245655
Q ss_pred EEEecceeeec
Q 037406 75 ALVQARWRFAK 85 (162)
Q Consensus 75 g~V~~~~~~~N 85 (162)
--.+.++.+++
T Consensus 209 l~l~lr~y~Ys 219 (356)
T PF04724_consen 209 LHLRLRFYYYS 219 (356)
T ss_pred eEEEeeceEEE
Confidence 44555555544
No 104
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=79.56 E-value=15 Score=28.83 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=30.2
Q ss_pred HHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCC
Q 037406 32 LKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNS 72 (162)
Q Consensus 32 lN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp 72 (162)
+-.++... ..|.++++++|. .+.++.+.+++..+..++
T Consensus 80 ~~~a~~~~---~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 80 LAEVMLKI---EADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred HHHHHHhC---CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 45566665 678999999998 678999999999885444
No 105
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=79.52 E-value=15 Score=28.66 Aligned_cols=51 Identities=18% Similarity=0.129 Sum_probs=34.6
Q ss_pred CCEEEEEeC-CCCCChHHHHHHHHHhccCCC-ccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 14 INIRYESRE-NRTGYKAGALKEGLKRSYVKH-CEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 14 ~~v~~i~~~-~~~G~KagAlN~gl~~a~~~~-ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.++.++..+ ...| -++++-.|+... . .+.++++.+|.+..++....+..+.
T Consensus 70 ~~~~i~~~~~~~~g-~~~~l~~a~~~l---~~~~~~lv~~~D~i~~~~~~~~~~~~~ 122 (231)
T cd04183 70 PNATVVELDGETLG-AACTVLLAADLI---DNDDPLLIFNCDQIVESDLLAFLAAFR 122 (231)
T ss_pred CCCEEEEeCCCCCc-HHHHHHHHHhhc---CCCCCEEEEecceeeccCHHHHHHHhh
Confidence 345544333 3456 478888888775 3 4778899999999988776655443
No 106
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=79.03 E-value=17 Score=31.58 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=38.6
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~d 71 (162)
.+++++..+...| -++++-.+++.. ....+.++++++|. .+.++.+++++..+...
T Consensus 66 ~~i~~v~~~~~~G-~~~sv~~~~~~l-~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 66 PGLEFVEQQPQLG-TGHAVQQLLPVL-KGFEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred CCeEEEEeCCcCC-cHHHHHHHHHHh-hccCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 3577775444455 467777777764 21245678899997 56889999999887543
No 107
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=77.57 E-value=22 Score=28.05 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=32.4
Q ss_pred HHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCC
Q 037406 29 AGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNS 72 (162)
Q Consensus 29 agAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp 72 (162)
..++-.|++.. . ..+++++.|+|. .++|+.+++++..+...+
T Consensus 85 ~~sv~~gl~~~-~-~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 85 QESVAAGLDRI-G-NEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred HHHHHHHHHhc-c-CCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 46777888775 2 357899999995 558999999999985443
No 108
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=77.34 E-value=3.9 Score=36.54 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=28.8
Q ss_pred CccEEEEEcCCCCCChHHHH---HHHHHHhcCCCeEEEec
Q 037406 43 HCEYVAIFDVDFRLEPDYLR---RAIPYLVQNSDIALVQA 79 (162)
Q Consensus 43 ~ge~i~i~DAD~~~~pd~L~---~lv~~f~~dp~vg~V~~ 79 (162)
+++.++|+..|..+.|||++ .+.+.++.||.+-+|++
T Consensus 191 ~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSa 230 (434)
T PF03071_consen 191 KYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISA 230 (434)
T ss_dssp --SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES
T ss_pred CCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEc
Confidence 68999999999999999864 66777778999999985
No 109
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=75.23 E-value=28 Score=26.74 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcCCC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~dp~ 73 (162)
...++..|++..-..+.++++++++|.- ++++.+++++..+...+.
T Consensus 80 ~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (218)
T cd02516 80 RQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYGA 126 (218)
T ss_pred HHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCCc
Confidence 5677888888751125789999999965 689999999998855544
No 110
>PLN02917 CMP-KDO synthetase
Probab=74.08 E-value=30 Score=28.90 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=39.8
Q ss_pred CEEEEEeC-CCCCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcCCCeEE
Q 037406 15 NIRYESRE-NRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQNSDIAL 76 (162)
Q Consensus 15 ~v~~i~~~-~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~dp~vg~ 76 (162)
+++++.++ ...|+-.++ ..|++.. ....|+++++++|.- ++|+.|++++..+..+++..+
T Consensus 108 ~v~vi~~~~~~~~GT~~~-~~a~~~l-~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv 169 (293)
T PLN02917 108 GADVIMTSESCRNGTERC-NEALKKL-EKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVF 169 (293)
T ss_pred CCEEEeCCcccCCchHHH-HHHHHhc-cCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceE
Confidence 35555442 223433443 5777765 334689999999966 689999999998865555433
No 111
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=73.63 E-value=29 Score=30.73 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=38.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~d 71 (162)
.+.++..+...| -++++-.|++..-....+.++++++|. .+.++.+++++..+...
T Consensus 71 ~~~~~~~~~~~G-t~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~ 127 (482)
T PRK14352 71 EVDIAVQDEQPG-TGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE 127 (482)
T ss_pred ccEEEeCCCCCC-cHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 455554444455 477888888875111247899999998 57889999999887443
No 112
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=73.54 E-value=7.5 Score=30.57 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=37.7
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCcc----EEEEEcCCCCCChHHHHHHHHHHhc
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCE----YVAIFDVDFRLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge----~i~i~DAD~~~~pd~L~~lv~~f~~ 70 (162)
++.++..+...| -++|+-.+.... ..+ .++++.+|.+.+.++- .++..+..
T Consensus 74 ~i~~i~~~~~~G-ta~al~~a~~~i---~~~~~~~~~lv~~gD~i~~~~~~-~~l~~~~~ 128 (248)
T PF00483_consen 74 KIEYIVQPEPLG-TAGALLQALDFI---EEEDDDEDFLVLNGDIIFDDDLQ-DMLEFHRE 128 (248)
T ss_dssp EEEEEEESSSSC-HHHHHHHTHHHH---TTSEE-SEEEEETTEEEESTTHH-HHHHHHHH
T ss_pred cceeeecccccc-hhHHHHHHHHHh---hhccccceEEEEeccccccchhh-hHHHhhhc
Confidence 478887777677 599999999987 444 5999999999988554 44444433
No 113
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=72.30 E-value=36 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=24.6
Q ss_pred CccEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 037406 43 HCEYVAIFDVDF-RLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 43 ~ge~i~i~DAD~-~~~pd~L~~lv~~f~~d 71 (162)
..++++++++|. .++++.+++++..+..+
T Consensus 90 ~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 90 DDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 468999999998 78999999999987443
No 114
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=72.18 E-value=29 Score=30.25 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=40.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCCeE
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSDIA 75 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~vg 75 (162)
+++++..+...|. ++++-.+++.....+.|+++++++|. .++++.+++++..+. ..++.
T Consensus 70 ~~~~v~~~~~~Gt-~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~-~~~~~ 129 (456)
T PRK14356 70 DARFVLQEQQLGT-GHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA-GADLA 129 (456)
T ss_pred CceEEEcCCCCCc-HHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh-cCCEE
Confidence 4566655544563 66788887765111358999999998 678999999998773 44443
No 115
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=70.94 E-value=39 Score=27.06 Aligned_cols=35 Identities=11% Similarity=0.207 Sum_probs=27.1
Q ss_pred CccEEEEEcCCCC-CChHHHHHHHHHHhcCCCeEEEe
Q 037406 43 HCEYVAIFDVDFR-LEPDYLRRAIPYLVQNSDIALVQ 78 (162)
Q Consensus 43 ~ge~i~i~DAD~~-~~pd~L~~lv~~f~~dp~vg~V~ 78 (162)
+.|+|+++|+|.- ++|+.|.+++..+ .+++.+++.
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~-~~~~~~~a~ 122 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNL-ATKNVPMAA 122 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHH-hcCCCCEEE
Confidence 4689999999965 7999999999998 444444333
No 116
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=70.78 E-value=20 Score=28.00 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=35.8
Q ss_pred CCEEEEEeCC--CCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHH
Q 037406 14 INIRYESREN--RTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIP 66 (162)
Q Consensus 14 ~~v~~i~~~~--~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~ 66 (162)
+++.++..+. ..| -++++..+++.. . +.++++.+|....++.++.++.
T Consensus 66 ~~~~~~~~~~~~~~g-~~~s~~~~~~~~---~-~~~lv~~~D~~~~~~~~~~~~~ 115 (229)
T cd02523 66 PNIKFVYNPDYAETN-NIYSLYLARDFL---D-EDFLLLEGDVVFDPSILERLLS 115 (229)
T ss_pred CCeEEEeCcchhhhC-cHHHHHHHHHHc---C-CCEEEEeCCEecCHHHHHHHHc
Confidence 5677775543 245 578888888875 3 6788999999999988887764
No 117
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=70.53 E-value=40 Score=26.53 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNS 72 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp 72 (162)
--+++-.||++. .+++++++=+|+-. +++.+.++.+.+..++
T Consensus 74 PL~Gi~~al~~~---~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 74 PLAGILAALRHF---GTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CHHHHHHHHHhC---CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 345789999998 89999999999654 7899999999995555
No 118
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=68.82 E-value=24 Score=30.39 Aligned_cols=54 Identities=24% Similarity=0.364 Sum_probs=45.3
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcC
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~d 71 (162)
+.++.|+..+...|. ++++-.+.+.. ..+-++++-.|....-| +..++.+.+++
T Consensus 72 ~~~I~y~~e~~~lGT-ag~l~~a~~~l---~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 72 GVRITYVVEKEPLGT-AGALKNALDLL---GGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred CCceEEEecCCcCcc-HHHHHHHHHhc---CCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 578888877766784 89999999997 66888999999999999 88888887555
No 119
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=68.36 E-value=55 Score=25.53 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcCCC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~dp~ 73 (162)
...++-.|++.. ++.|+++++|+|.- ++++.+++++..+..++.
T Consensus 82 ~~~sv~~~l~~~--~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 126 (227)
T PRK00155 82 RQDSVLNGLQAL--PDDDWVLVHDAARPFLTPDDIDRLIEAAEETGA 126 (227)
T ss_pred HHHHHHHHHHhC--CCCCEEEEccCccCCCCHHHHHHHHHHHhhCCC
Confidence 466777788764 24789999999965 689999999998854433
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=67.63 E-value=61 Score=31.02 Aligned_cols=96 Identities=23% Similarity=0.295 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhcc------------------CCCccEEEEEcCCCCC-ChHH--
Q 037406 2 VEQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSY------------------VKHCEYVAIFDVDFRL-EPDY-- 60 (162)
Q Consensus 2 i~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~------------------~~~ge~i~i~DAD~~~-~pd~-- 60 (162)
|+++++++ .|..++++.....-.+.++++.-+...- .++...|+++|||..+ .|||
T Consensus 496 ieeeL~~~---FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 496 IEEELKRL---FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHH---CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 45555555 8888888876553334445666555431 1356689999999655 3443
Q ss_pred HHHHHHHHhc---------CCCeEEEecceeeecCCccHHHHHHHHHHHHHHh
Q 037406 61 LRRAIPYLVQ---------NSDIALVQARWRFAKEAKELTEARANNEAKAELE 104 (162)
Q Consensus 61 L~~lv~~f~~---------dp~vg~V~~~~~~~N~~~~l~~~~~~~ey~~~~~ 104 (162)
-+++...+.+ .|.-.++|+ +++++...+....+.|..|+.
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT----~~P~hp~i~~~~~~dy~~F~~ 621 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQT----YNPDHPAIQALKRGDYEAFYE 621 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEe----CCCCcHHHHHHHhcCHHHHHH
Confidence 4444444321 344455554 456665555555556666643
No 121
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=67.56 E-value=35 Score=29.39 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHh
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLV 69 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~ 69 (162)
-.+++-.|++.. +.++++++++|. .++|+.+++++..+.
T Consensus 80 ~~~si~~gl~~~---~~~~vlv~~~D~P~i~~~~i~~L~~~~~ 119 (366)
T PRK14489 80 PLSGILAGLEHA---DSEYLFVVACDTPFLPENLVKRLSKALA 119 (366)
T ss_pred hHHHHHHHHHhc---CCCcEEEeeCCcCCCCHHHHHHHHHHhh
Confidence 566788899987 789999999995 569999999999873
No 122
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=67.32 E-value=9.3 Score=29.71 Aligned_cols=34 Identities=9% Similarity=0.067 Sum_probs=28.2
Q ss_pred HHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 32 LKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 32 lN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.|.-.+.. +.+|.+.+|+-+.|.++.|-++...|
T Consensus 130 Fnaf~~~l---~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 130 FNAFCRQL---QPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred HHHHHhhc---CCcEEEEEecCCCcCchHHHHHHhhC
Confidence 34445555 88999999999999999999998765
No 123
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=66.58 E-value=19 Score=24.25 Aligned_cols=42 Identities=12% Similarity=0.037 Sum_probs=23.8
Q ss_pred CCEEEEEeCCCCC---ChHHHHHHHHHhccCCCccEEEEEcCCCCCC
Q 037406 14 INIRYESRENRTG---YKAGALKEGLKRSYVKHCEYVAIFDVDFRLE 57 (162)
Q Consensus 14 ~~v~~i~~~~~~G---~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~ 57 (162)
+.+.++....... .+...++..++. ..+++|++++|+|-.+.
T Consensus 41 ~~v~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 41 PGVGIIRWVDPYRDERRQRAWRNALIER--AFDADWVLFLDADEFLV 85 (97)
T ss_pred CCcEEEEeCCCccchHHHHHHHHHHHHh--CCCCCEEEEEeeeEEEe
Confidence 5567776543211 123334443333 23789999999995443
No 124
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=66.52 E-value=28 Score=28.10 Aligned_cols=48 Identities=15% Similarity=-0.086 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEE
Q 037406 25 TGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIAL 76 (162)
Q Consensus 25 ~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~ 76 (162)
.| =++|+..+.+.. +.+.++++++|.+...|+-.-+-.+...+.++.+
T Consensus 103 ~g-t~~al~~~~~~i---~~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl 150 (254)
T TIGR02623 103 TQ-TGGRLKRVREYL---DDEAFCFTYGDGVADIDIKALIAFHRKHGKKATV 150 (254)
T ss_pred CC-cHHHHHHHHHhc---CCCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEE
Confidence 45 378898888886 5667779999998776655433334323344433
No 125
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=65.78 E-value=41 Score=25.57 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=38.6
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHh
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLV 69 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~ 69 (162)
+++++..+. .| ...++..|++.+ ...++.++++-+|.- ++++.+++++..+.
T Consensus 65 ~v~~i~~~~-~G-~~~si~~al~~~-~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 65 GAPVLRDPG-PG-LNNALNAALAEA-REPGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCEEEecCC-CC-HHHHHHHHHHHh-hccCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 456665443 35 677888888875 224579999999966 68999999999883
No 126
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=63.87 E-value=25 Score=27.59 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=29.5
Q ss_pred CCCCChHHHHHHHHHhccCC-CccEEEEEcCCCCCChHHHHHHHHHHhc
Q 037406 23 NRTGYKAGALKEGLKRSYVK-HCEYVAIFDVDFRLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 23 ~~~G~KagAlN~gl~~a~~~-~ge~i~i~DAD~~~~pd~L~~lv~~f~~ 70 (162)
...| -++++..+.+.. .. ..+ ++++.+|.+...++ ++++..++.
T Consensus 82 ~~~G-~~~al~~a~~~~-~~~~~~-~lv~~~D~~~~~~~-~~~~~~~~~ 126 (233)
T cd06425 82 EPLG-TAGPLALARDLL-GDDDEP-FFVLNSDVICDFPL-AELLDFHKK 126 (233)
T ss_pred CCCc-cHHHHHHHHHHh-ccCCCC-EEEEeCCEeeCCCH-HHHHHHHHH
Confidence 3356 478898888876 21 134 57779998887774 677776643
No 127
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=63.61 E-value=13 Score=30.23 Aligned_cols=49 Identities=18% Similarity=0.147 Sum_probs=33.6
Q ss_pred CEEEEEeCCCCCC-hHHHHHHHHHhccC-CCccEEEEEcCCCCCChHHHHH
Q 037406 15 NIRYESRENRTGY-KAGALKEGLKRSYV-KHCEYVAIFDVDFRLEPDYLRR 63 (162)
Q Consensus 15 ~v~~i~~~~~~G~-KagAlN~gl~~a~~-~~ge~i~i~DAD~~~~pd~L~~ 63 (162)
.|-++....+.-+ |+..+|.|...|.. .+.+++++=|.|.+|..+++..
T Consensus 36 ~i~vi~Q~~~~~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y 86 (219)
T cd00899 36 RIFVIEQVGNFRFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY 86 (219)
T ss_pred EEEEEEecCCccchhhhhhhHHHHHHhhcCCccEEEEecccccccCccccc
Confidence 3444544333222 78889998766621 1479999999999999998664
No 128
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=63.30 E-value=41 Score=26.46 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=36.0
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhc-CCCeEE
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQ-NSDIAL 76 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~-dp~vg~ 76 (162)
++.+...+...| -++++..+.+.. +.|-++++.+|..+.+.-+.+++..+.. +.++.+
T Consensus 74 ~i~~~~~~~~~G-~~~al~~a~~~~---~~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~ 132 (240)
T cd02538 74 RITYAVQPKPGG-LAQAFIIGEEFI---GDDPVCLILGDNIFYGQGLSPILQRAAAQKEGATV 132 (240)
T ss_pred eEEEeeCCCCCC-HHHHHHHHHHhc---CCCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEE
Confidence 455554433456 488898888886 5565666688877655556677765532 344443
No 129
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=61.91 E-value=44 Score=27.38 Aligned_cols=44 Identities=9% Similarity=-0.102 Sum_probs=31.0
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccC-CCccEEEEEcCCCCCC
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYV-KHCEYVAIFDVDFRLE 57 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~-~~ge~i~i~DAD~~~~ 57 (162)
.++++++..+...| -++|+-.++..... ...++++++.+|+...
T Consensus 72 ~~~~~ii~ep~~~g-Ta~ai~~a~~~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 72 LPEENIILEPEGRN-TAPAIALAALYLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred CCCceEEECCCCCC-cHHHHHHHHHHHHhcCCCCeEEEecchhccc
Confidence 45677887666667 47788877776411 1257999999998876
No 130
>PLN03153 hypothetical protein; Provisional
Probab=61.73 E-value=48 Score=30.53 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 41 VKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 41 ~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.++.+|+++.|+|+.+.++-|.+.+..+
T Consensus 208 ~pd~kWfVf~DDDTyf~~~NLv~~Ls~Y 235 (537)
T PLN03153 208 LPDVRWFVLGDDDTIFNADNLVAVLSKY 235 (537)
T ss_pred CCCCCEEEEecCCccccHHHHHHHHhhc
Confidence 4578999999999999998888888887
No 131
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=61.65 E-value=4 Score=35.29 Aligned_cols=38 Identities=21% Similarity=0.171 Sum_probs=29.8
Q ss_pred HHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhc
Q 037406 30 GALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 30 gAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~ 70 (162)
+.+|.|.-.+ +-+||+++|.|+.|..|..-+.+..+.+
T Consensus 81 a~R~fGyL~s---~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 81 ACRNFGYLVS---KKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred chhhhHhhhc---ccceEEEEccccccccCCccceehhhhc
Confidence 4566676666 8899999999999999887777666643
No 132
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=61.24 E-value=48 Score=27.88 Aligned_cols=51 Identities=14% Similarity=0.092 Sum_probs=33.7
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHh
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLV 69 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~ 69 (162)
.++.++..+...| -++++-.+++.. ..+-++++.+|...+.+ +.+++..+.
T Consensus 72 ~~~~~~~~~~~~G-~~~al~~a~~~l---~~~~~li~~gD~~~~~~-l~~l~~~~~ 122 (353)
T TIGR01208 72 AKITYIVQGEPLG-LAHAVYTARDFL---GDDDFVVYLGDNLIQDG-ISRFVKSFE 122 (353)
T ss_pred ceEEEEECCCCCC-HHHHHHHHHHhc---CCCCEEEEECCeecCcc-HHHHHHHHH
Confidence 3566665554566 588899888875 33335566799887654 566777663
No 133
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=60.68 E-value=70 Score=25.66 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=44.5
Q ss_pred CCEEEEEeCCC-CCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcC
Q 037406 14 INIRYESRENR-TGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQN 71 (162)
Q Consensus 14 ~~v~~i~~~~~-~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~d 71 (162)
.+++++..+.. .| -+.++-.|++++ ...++.++++=+|.- +.|+.+.+++..|..+
T Consensus 68 ~~~~~v~npd~~~G-ls~Sl~ag~~a~-~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 68 LGVTVVVNPDYAQG-LSTSLKAGLRAA-DAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred CCeEEEeCcchhhh-HhHHHHHHHHhc-ccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 46788877765 55 788999999998 222259999999976 8999999999999544
No 134
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=60.54 E-value=71 Score=27.73 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=37.2
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHh
Q 037406 16 IRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLV 69 (162)
Q Consensus 16 v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~ 69 (162)
+.++..+...| -++++..+++.. ....|.++++++|. .+.++.+++++..++
T Consensus 67 ~~~~~~~~~~g-~~~al~~a~~~l-~~~~d~vlv~~~D~p~i~~~~l~~li~~~~ 119 (458)
T PRK14354 67 SEFALQEEQLG-TGHAVMQAEEFL-ADKEGTTLVICGDTPLITAETLKNLIDFHE 119 (458)
T ss_pred cEEEEcCCCCC-HHHHHHHHHHHh-cccCCeEEEEECCccccCHHHHHHHHHHHH
Confidence 44444443455 477888888775 21247899999998 678999999998874
No 135
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=60.44 E-value=80 Score=27.54 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCC-CCCChHHHHHHHHHHh
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVD-FRLEPDYLRRAIPYLV 69 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD-~~~~pd~L~~lv~~f~ 69 (162)
...++-.|++.. +.|++++.|+| -.++++.+++++..+.
T Consensus 83 r~~SV~~gL~~l---~~d~VLVhdadrPfv~~e~I~~li~~~~ 122 (378)
T PRK09382 83 RQESVRNALEAL---DSEYVLIHDAARPFVPKELIDRLIEALD 122 (378)
T ss_pred HHHHHHHHHHhc---CCCeEEEeeccccCCCHHHHHHHHHHhh
Confidence 345678888887 66999999999 4568999999999884
No 136
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=57.94 E-value=77 Score=24.78 Aligned_cols=35 Identities=11% Similarity=0.280 Sum_probs=27.2
Q ss_pred HHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhc
Q 037406 33 KEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQ 70 (162)
Q Consensus 33 N~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~ 70 (162)
..+++.. +.|+++++++|.- ++|+.+++++..+..
T Consensus 80 ~~~~~~~---~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 80 YQAAEEY---NADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred HHHHHHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 3344444 6799999999965 589999999998854
No 137
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=57.90 E-value=60 Score=26.04 Aligned_cols=51 Identities=22% Similarity=0.160 Sum_probs=33.9
Q ss_pred HHHHHHHHHhccCCCccEEEEEcCCCCCChHH----HHHHHHHHhcC--CCeEEEecc
Q 037406 29 AGALKEGLKRSYVKHCEYVAIFDVDFRLEPDY----LRRAIPYLVQN--SDIALVQAR 80 (162)
Q Consensus 29 agAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~----L~~lv~~f~~d--p~vg~V~~~ 80 (162)
..|.|..+-+. ....+|++++|.|-.+-|.- ...+...++.. +.++.++-.
T Consensus 90 ~~a~~DCl~r~-~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 146 (285)
T PF01697_consen 90 IAAYNDCLLRY-RYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPNISAGAYSFR 146 (285)
T ss_pred HHHHHHHHHHh-hhhceEEEEeccccEEEeccccchhhHHHHHHhhccccceEEEEEe
Confidence 57888888874 55789999999996665433 55555555433 345555533
No 138
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=57.36 E-value=33 Score=27.40 Aligned_cols=38 Identities=16% Similarity=-0.002 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhccCCCc-cEEEEEcCCCCCChHHHHHHHHHHh
Q 037406 28 KAGALKEGLKRSYVKHC-EYVAIFDVDFRLEPDYLRRAIPYLV 69 (162)
Q Consensus 28 KagAlN~gl~~a~~~~g-e~i~i~DAD~~~~pd~L~~lv~~f~ 69 (162)
-++++-.+++.. .. +.++++++|.+...|. ..++..+.
T Consensus 104 t~~al~~a~~~~---~~~~~~lv~~gD~i~~~dl-~~ll~~h~ 142 (253)
T cd02524 104 TGGRLKRVRRYL---GDDETFMLTYGDGVSDVNI-NALIEFHR 142 (253)
T ss_pred cHHHHHHHHHhc---CCCCeEEEEcCCEEECCCH-HHHHHHHH
Confidence 477888888886 54 7899999999998888 78887653
No 139
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=56.18 E-value=46 Score=25.70 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=33.3
Q ss_pred HHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCC
Q 037406 29 AGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 29 agAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~ 73 (162)
..++..|++.. .+.|+++++++|. .++++.+++++..+..++.
T Consensus 78 ~~sl~~~l~~~--~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~~ 121 (217)
T TIGR00453 78 QDSVRNGLKAL--KDAEWVLVHDAARPFVPKELLDRLLEALRKAGA 121 (217)
T ss_pred HHHHHHHHHhC--CCCCEEEEccCccCCCCHHHHHHHHHHHhhCCc
Confidence 45677788764 2468999999997 5799999999998855543
No 140
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.55 E-value=79 Score=28.14 Aligned_cols=55 Identities=18% Similarity=0.276 Sum_probs=37.7
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~d 71 (162)
++.++..+...| -++++-.|++.....+.+ ++++++|. .+.++.+++++..+...
T Consensus 72 ~i~~v~~~~~~G-t~~al~~~~~~l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~ 127 (481)
T PRK14358 72 GVAFARQEQQLG-TGDAFLSGASALTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQ 127 (481)
T ss_pred CcEEecCCCcCC-cHHHHHHHHHHhhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 567776544456 478888888775111234 67799998 67888899998877443
No 141
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.90 E-value=68 Score=27.84 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=38.1
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHHhc
Q 037406 16 IRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 16 v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~ 70 (162)
+.++..+...| -++++..+++.. . +.|.++++++|. .+.+..+++++..+++
T Consensus 64 ~~~~~~~~~~g-~~~ai~~a~~~l-~-~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 64 VKIFLQEEQLG-TAHAVMCARDFI-E-PGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred cEEEecCCCCC-hHHHHHHHHHhc-C-cCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 45554544456 478898898875 1 258999999997 5678888999888743
No 142
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=53.67 E-value=90 Score=24.86 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=36.1
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhc
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~ 70 (162)
+..+.++..+...|. ++|+..+....-....|.++++.+|.....| +..++..+.+
T Consensus 73 ~~~i~~~~~~~~~Gt-~~al~~a~~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~ 128 (257)
T cd06428 73 NVPIRYLQEYKPLGT-AGGLYHFRDQILAGNPSAFFVLNADVCCDFP-LQELLEFHKK 128 (257)
T ss_pred CceEEEecCCccCCc-HHHHHHHHHHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHH
Confidence 345666655545674 7788777766401124778899999887666 6677776643
No 143
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=53.20 E-value=1.2e+02 Score=24.63 Aligned_cols=96 Identities=16% Similarity=0.094 Sum_probs=57.9
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHH---HhccCCCc-c---EEEEEcCCCCCCh---HHHHHHHHHHhc-
Q 037406 2 VEQECQRWAAKGINIRYESRENRTGYKAGALKEGL---KRSYVKHC-E---YVAIFDVDFRLEP---DYLRRAIPYLVQ- 70 (162)
Q Consensus 2 i~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl---~~a~~~~g-e---~i~i~DAD~~~~p---d~L~~lv~~f~~- 70 (162)
+.+.++..++.+.+++++-.-...| -.+-+++-. +.+ ...| + +=+|+|--..+|. .+|+++...+.+
T Consensus 16 l~~~~~~~k~~~~~lHl~GLlSdGG-VHSh~~Hl~al~~~a-~~~gv~~V~vH~f~DGRDt~P~S~~~yl~~l~~~l~~~ 93 (223)
T PF06415_consen 16 LLEAIEHAKKNGGRLHLMGLLSDGG-VHSHIDHLFALIKLA-KKQGVKKVYVHAFTDGRDTPPKSALKYLEELEEKLAEI 93 (223)
T ss_dssp HHHHHHHHCCTT--EEEEEEESS-S-SS--HHHHHHHHHHH-HHTT-SEEEEEEEE-SSSS-TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEEEecCCC-ccccHHHHHHHHHHH-HHcCCCEEEEEEecCCCCCCcchHHHHHHHHHHHHHhh
Confidence 3456677776677899987765545 333455432 222 1122 3 5589999888886 888888888855
Q ss_pred -CCCeEEEecceeeecCCccHHHHHHHHHH
Q 037406 71 -NSDIALVQARWRFAKEAKELTEARANNEA 99 (162)
Q Consensus 71 -dp~vg~V~~~~~~~N~~~~l~~~~~~~ey 99 (162)
.-.++-|+|+.....++..|.+.+..|+.
T Consensus 94 ~~g~IAsv~GRyyaMDRD~rWeRv~~Ay~a 123 (223)
T PF06415_consen 94 GIGRIASVSGRYYAMDRDKRWERVEKAYDA 123 (223)
T ss_dssp TCTEEEEEEECCCCT--TS-HHHHHHHHHH
T ss_pred CCceEEEEeceeeeeccccCHHHHHHHHHH
Confidence 34799999998777888888877765544
No 144
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=51.86 E-value=1.3e+02 Score=26.24 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=37.1
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHHHH
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIPYL 68 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f 68 (162)
++.++..+...| -++++-.+++.. . +.+.++++++|. .+.++.+.+++...
T Consensus 70 ~~~~i~~~~~~G-t~~al~~a~~~l-~-~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 70 PLNWVLQAEQLG-TGHAMQQAAPFF-A-DDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred CcEEEECCCCCC-cHHHHHHHHHhh-c-cCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 466665554456 478888888775 1 357899999997 56788899988765
No 145
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=50.86 E-value=1.1e+02 Score=24.17 Aligned_cols=43 Identities=16% Similarity=0.209 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhccC-CCccEEEEEcCCCCC-ChHHHHHHHHHHhc
Q 037406 28 KAGALKEGLKRSYV-KHCEYVAIFDVDFRL-EPDYLRRAIPYLVQ 70 (162)
Q Consensus 28 KagAlN~gl~~a~~-~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~ 70 (162)
...++..|++..-. ...|+|+++++|.-+ .|+.+.+++..|.+
T Consensus 78 ~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 78 TAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred chHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 45677888776411 247999999999665 78999999999954
No 146
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=48.52 E-value=92 Score=23.80 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=34.0
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcC-CCeEEE
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQN-SDIALV 77 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~d-p~vg~V 77 (162)
.++.++..+...|. ++++-.+.+. ..+.++++.+|.+..++ +.+++..+... ..+.++
T Consensus 70 ~~i~~~~~~~~~g~-~~~l~~~~~~----~~~~~lv~~~D~i~~~~-~~~l~~~~~~~~~~~~~~ 128 (220)
T cd06426 70 VNISYVREDKPLGT-AGALSLLPEK----PTDPFLVMNGDILTNLN-YEHLLDFHKENNADATVC 128 (220)
T ss_pred ccEEEEECCCCCcc-hHHHHHHHhh----CCCCEEEEcCCEeeccC-HHHHHHHHHhcCCCEEEE
Confidence 34555544334553 6777544433 35778888999877665 46777776443 334443
No 147
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=47.46 E-value=45 Score=29.28 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=31.2
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHh-----cCCCeEEEecceeeecC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLV-----QNSDIALVQARWRFAKE 86 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~-----~dp~vg~V~~~~~~~N~ 86 (162)
|+-++=.|+-.|-...-+||.|+|||..+|-- ..+.+..|. +.....+|--+|++...
T Consensus 144 KgEGMiiGillAk~~g~~YVGFvDADNyiPGa-V~EYvk~yAAGf~ms~spytMVRi~W~~KPK 206 (381)
T PF09488_consen 144 KGEGMIIGILLAKAPGKRYVGFVDADNYIPGA-VNEYVKDYAAGFAMSESPYTMVRIHWRSKPK 206 (381)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--TTBS-HHH-HHHHHHHHHHHHHC-SSSCEEEEEE------
T ss_pred chHHHHHHHHHHHhcCCceEeEeeccCCCcch-HHHHHHHHHhhhcccCCCceEEEEEecCCCc
Confidence 88777777665522356999999999877643 333333332 36778899888887643
No 148
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=46.47 E-value=22 Score=29.03 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHhcCCC
Q 037406 43 HCEYVAIFDVDFRLEPDYLRRAIPYLVQNSD 73 (162)
Q Consensus 43 ~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~ 73 (162)
+.+-|+.+|.|..++++.|+.....-+++|+
T Consensus 75 ~T~AVl~~DDDv~~~~~~l~faF~~W~~~pd 105 (247)
T PF09258_consen 75 ETDAVLSLDDDVMLSCDELEFAFQVWREFPD 105 (247)
T ss_dssp -SSEEEEEETTEEE-HHHHHHHHHHHCCSTT
T ss_pred CcceEEEecCCcccCHHHHHHHHHHHHhChh
Confidence 7899999999999999999998888877776
No 149
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=44.54 E-value=1.2e+02 Score=26.14 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=32.1
Q ss_pred cCCCEEEEEeCCC--CCChHHHHHHHHHhccCCCccEEEEEcCCC-CCChHHHHHHHH
Q 037406 12 KGINIRYESRENR--TGYKAGALKEGLKRSYVKHCEYVAIFDVDF-RLEPDYLRRAIP 66 (162)
Q Consensus 12 ~~~~v~~i~~~~~--~G~KagAlN~gl~~a~~~~ge~i~i~DAD~-~~~pd~L~~lv~ 66 (162)
.+++++++..+.. .| -++++... .. ..|+++++++|. ...++.++++..
T Consensus 65 ~~~~v~~~~~~~~~~~g-t~~al~~~--~~---~~d~vlv~~gD~p~~~~~~l~~l~~ 116 (430)
T PRK14359 65 YFPGVIFHTQDLENYPG-TGGALMGI--EP---KHERVLILNGDMPLVEKDELEKLLE 116 (430)
T ss_pred cCCceEEEEecCccCCC-cHHHHhhc--cc---CCCeEEEEECCccCCCHHHHHHHHh
Confidence 3456777765432 44 46666542 12 468999999998 457888888764
No 150
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=44.42 E-value=1.3e+02 Score=22.88 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=31.5
Q ss_pred hHHHHHHHHHhcc--CCCccEEEEEcCCCC-CChHHHHHHHHHHhc
Q 037406 28 KAGALKEGLKRSY--VKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQ 70 (162)
Q Consensus 28 KagAlN~gl~~a~--~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~ 70 (162)
-..++..+++..- ....|+++++++|.- +.++.+++++..+..
T Consensus 80 ~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 80 SIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred cHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 3556777776540 012489999999975 589999999999854
No 151
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=43.21 E-value=85 Score=25.06 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=37.2
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChH--HHHHHHHHHhc
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPD--YLRRAIPYLVQ 70 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd--~L~~lv~~f~~ 70 (162)
++.++..+...| -++++..+++.. +.+-++++.+|.....+ .+++++..+..
T Consensus 94 ~i~~~~~~~~~G-t~~al~~~~~~i---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~ 147 (267)
T cd02541 94 NIHYVRQKEPLG-LGHAVLCAKPFI---GDEPFAVLLGDDLIDSKEPCLKQLIEAYEK 147 (267)
T ss_pred eEEEEEcCCCCC-hHHHHHHHHHHh---CCCceEEEECCeEEeCCchHHHHHHHHHHH
Confidence 455665555567 588999999886 54667788899877653 68888887743
No 152
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=43.16 E-value=84 Score=26.20 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=34.6
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
+.++.++..+...| -++|+-.|.+.. . +.++++++ .|.++...-+..++..+
T Consensus 75 g~~i~y~~q~~~~G-ta~Al~~a~~~i-~-~~~~~lv~-gD~i~~~~~l~~ll~~~ 126 (292)
T PRK15480 75 GLNLQYKVQPSPDG-LAQAFIIGEEFI-G-GDDCALVL-GDNIFYGHDLPKLMEAA 126 (292)
T ss_pred CceeEEEECCCCCC-HHHHHHHHHHHh-C-CCCEEEEE-CCeeeeccCHHHHHHHH
Confidence 56788887766667 699999998886 1 23666666 66555433466666654
No 153
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=42.29 E-value=27 Score=30.33 Aligned_cols=35 Identities=26% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHhccCCCccEEEEEcCCCCCChH-------HHHHHHHHH
Q 037406 31 ALKEGLKRSYVKHCEYVAIFDVDFRLEPD-------YLRRAIPYL 68 (162)
Q Consensus 31 AlN~gl~~a~~~~ge~i~i~DAD~~~~pd-------~L~~lv~~f 68 (162)
.+|.|+=.+ +.+||+.+|.|+.|..| ++.+.+..+
T Consensus 84 ~R~fGyL~s---~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~NL 125 (346)
T PLN03180 84 CRCFGYLVS---KKKYIFTIDDDCFVAKDPSGKLINALEQHIKNL 125 (346)
T ss_pred chhhhheee---cceEEEEECCCCCCCCCCccccccHHHHHHHhc
Confidence 456676555 78999999999999877 777766644
No 154
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=40.42 E-value=26 Score=30.78 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHh-----cCCCeEEEecceeee
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLV-----QNSDIALVQARWRFA 84 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~-----~dp~vg~V~~~~~~~ 84 (162)
|+-++=.|+-.|-.-.-+||.|+|||..+|--.- +.+..|. +.....+|--.|.+.
T Consensus 145 KgEGMiiG~lLAk~~g~~YVGFiDADNyiPGaV~-EYvk~yAAGf~ma~spytMVRi~W~~K 205 (393)
T PRK14503 145 KGEGMIIGLLLAKALGARYVGFVDADNYIPGAVN-EYVKIYAAGFLMAESPYTMVRIHWRYK 205 (393)
T ss_pred cchHHHHHHHHHHHhCCCeEeEeecccCCCchHH-HHHHHHHhhhcccCCCCceEEEEecCC
Confidence 7777777665541124689999999988764333 3333221 133456676666554
No 155
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=38.20 E-value=86 Score=25.99 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=33.6
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
+.++.++..+...| -++|+-.+.+.. . +.++++++ .|..+.+.-+.+++...
T Consensus 71 g~~i~~~~q~~~~G-ta~al~~a~~~l-~-~~~~~li~-gD~i~~~~~l~~ll~~~ 122 (286)
T TIGR01207 71 GVNLSYAVQPSPDG-LAQAFIIGEDFI-G-GDPSALVL-GDNIFYGHDLSDLLKRA 122 (286)
T ss_pred CceEEEEEccCCCC-HHHHHHHHHHHh-C-CCCEEEEE-CCEeccccCHHHHHHHH
Confidence 44677776655667 588999999886 1 24566665 77655444566666544
No 156
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=37.78 E-value=53 Score=28.80 Aligned_cols=57 Identities=23% Similarity=0.347 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHH---Hh-cCCCeEEEecceeee
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPY---LV-QNSDIALVQARWRFA 84 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~---f~-~dp~vg~V~~~~~~~ 84 (162)
|+-++=.|+-.|-.-.-+||.|+|||..+|--.-+....+ |. +.....+|--.|.+.
T Consensus 144 KgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGaV~EYvk~yAaGf~ma~spy~MVRi~W~~K 204 (381)
T TIGR02460 144 KGEGMLLGLLLAKAIGAEYVGFVDADNYFPGAVNEYVKIYAAGFLMATSPYSMVRIHWRYK 204 (381)
T ss_pred cchHHHHHHHHHHHhCCceEeEeecccCCCchHHHHHHHHHhhhcccCCCCeeEEEEecCC
Confidence 7777777765541124689999999988764333333222 21 133457776666554
No 157
>PRK13236 nitrogenase reductase; Reviewed
Probab=37.72 E-value=67 Score=26.65 Aligned_cols=41 Identities=17% Similarity=0.070 Sum_probs=26.4
Q ss_pred CCEEEEEeCCCCC-ChHH-HHHHHHHhccCCCccEEEEEcCCCCC
Q 037406 14 INIRYESRENRTG-YKAG-ALKEGLKRSYVKHCEYVAIFDVDFRL 56 (162)
Q Consensus 14 ~~v~~i~~~~~~G-~Kag-AlN~gl~~a~~~~ge~i~i~DAD~~~ 56 (162)
.+++++......| +|.- +.|.|...+ ..|.=|+++|+|.+.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La--~~G~rVLliD~D~q~ 46 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMA--EMGQRILIVGCDPKA 46 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHH--HCCCcEEEEEccCCC
Confidence 4566666643222 3764 667666554 257889999999775
No 158
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=37.66 E-value=52 Score=29.81 Aligned_cols=67 Identities=16% Similarity=0.213 Sum_probs=42.5
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhcc-CCCccEEEEEcCCCCC--------------------ChHHHHHHHHHHhcCC
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSY-VKHCEYVAIFDVDFRL--------------------EPDYLRRAIPYLVQNS 72 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~-~~~ge~i~i~DAD~~~--------------------~pd~L~~lv~~f~~dp 72 (162)
++++++..+ |+|-=-+++=.++.... ..++|+|+.+-.---+ ++++..+++..|++||
T Consensus 319 ~~~~v~vv~-NrGRDi~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p 397 (498)
T PF05045_consen 319 KNAEVRVVE-NRGRDILPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDP 397 (498)
T ss_pred CceEEEEeC-CCCccHHHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Confidence 356666554 55643344443333211 2489999988654322 2456788899998899
Q ss_pred CeEEEecce
Q 037406 73 DIALVQARW 81 (162)
Q Consensus 73 ~vg~V~~~~ 81 (162)
++|+|.++.
T Consensus 398 ~lGlv~P~~ 406 (498)
T PF05045_consen 398 RLGLVIPDI 406 (498)
T ss_pred CceEEeCCc
Confidence 999999875
No 159
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=37.47 E-value=57 Score=28.07 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=35.3
Q ss_pred CCccEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeEEEecceeeecC
Q 037406 42 KHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNSDIALVQARWRFAKE 86 (162)
Q Consensus 42 ~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~ 86 (162)
+..+||++++.|..+ ++..+..++..| ...++.++|.+-.+.|.
T Consensus 115 ~~~~yivVlEDDnTi~~~~~~~~~I~~M-~~n~idilQLre~~~~~ 159 (323)
T PHA02688 115 KEDEYIVVVEDDNTLRDITTLHPIIKAM-KEKNIDILQLRETLHNN 159 (323)
T ss_pred cCCCeEEEEcCCCcccccHHHHHHHHHH-HhcCeEEEEeehhhhCC
Confidence 358999999999766 568899999999 56689999987655554
No 160
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=37.17 E-value=1e+02 Score=27.47 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCcc-EEEEEcCCCCCChHHHHHHHHH
Q 037406 4 QECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCE-YVAIFDVDFRLEPDYLRRAIPY 67 (162)
Q Consensus 4 ~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge-~i~i~DAD~~~~pd~L~~lv~~ 67 (162)
+.+..++.+++++..+.....-. .+-||-.|-++. +.+ .+.+.|.|.....+||+++-..
T Consensus 277 e~~tslra~f~~~q~l~lngeFS-Ra~aL~vGAe~~---~~nvLLFfcDVDi~FT~efL~rcr~N 337 (494)
T KOG3588|consen 277 ETITSLRASFIPVQFLGLNGEFS-RAKALMVGAETL---NANVLLFFCDVDIYFTTEFLNRCRLN 337 (494)
T ss_pred hHHHHHhhcCCceEEecccchhh-hhHHHHhhHHHh---ccceeEEEeccceeehHHHHHHHhhc
Confidence 34557778888887775433211 455688888887 555 5566799999999999998544
No 161
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=36.74 E-value=35 Score=29.62 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=43.2
Q ss_pred HHHHHHhc-CCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCC---CCCChHHHHHH
Q 037406 5 ECQRWAAK-GINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVD---FRLEPDYLRRA 64 (162)
Q Consensus 5 ~v~~l~~~-~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD---~~~~pd~L~~l 64 (162)
.+.+.++. ...+||++..+..| -+|+|.+--++.+.++.+-+.++.|| +.|-++.|+..
T Consensus 68 fis~~~~e~~~pvrYL~E~~plG-taGgLyhFrdqIl~g~ps~vFvlnaDVCcsfPl~~ml~ah 130 (407)
T KOG1460|consen 68 FISAIQQEFKVPVRYLREDNPLG-TAGGLYHFRDQILAGSPSAVFVLNADVCCSFPLQDMLEAH 130 (407)
T ss_pred HHHHHHhhcccchhhhccCCCCC-cccceeehhhHHhcCCCceEEEEecceecCCcHHHHHHHH
Confidence 34444443 34589998777777 58889888777777789999999999 45557777766
No 162
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=36.48 E-value=2.7e+02 Score=23.71 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=42.0
Q ss_pred HHHHHH--hcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCC--hHHHHHHHHHHhc
Q 037406 5 ECQRWA--AKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLE--PDYLRRAIPYLVQ 70 (162)
Q Consensus 5 ~v~~l~--~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~--pd~L~~lv~~f~~ 70 (162)
.+++++ ....++.++|.+...| =.+|.-.|=... ..|-++++=.|.+.. +..+++++..++.
T Consensus 86 ~L~~v~~i~~~~~i~~vRQ~e~~G-LGhAVl~A~~~v---g~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~ 151 (291)
T COG1210 86 LLEEVRSIPPLVTISFVRQKEPLG-LGHAVLCAKPFV---GDEPFAVLLPDDLVDSEKPCLKQMIELYEE 151 (291)
T ss_pred HHHHHHhcccCceEEEEecCCCCc-chhHHHhhhhhc---CCCceEEEeCCeeecCCchHHHHHHHHHHH
Confidence 344444 3466889998887778 477777777776 566444444554443 6889999999854
No 163
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=36.43 E-value=29 Score=28.26 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=24.8
Q ss_pred cCCCccEEEEEcCCC-CCChHHHHHHHHHHhcCCCeEEEec
Q 037406 40 YVKHCEYVAIFDVDF-RLEPDYLRRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 40 ~~~~ge~i~i~DAD~-~~~pd~L~~lv~~f~~dp~vg~V~~ 79 (162)
+.++.|+|+++|||. ++.|+- .+..| -+|++.++--
T Consensus 38 ~L~~~~~vlflDaDigVvNp~~---~iEef-id~~~Di~fy 74 (222)
T PF03314_consen 38 ILPEYDWVLFLDADIGVVNPNR---RIEEF-IDEGYDIIFY 74 (222)
T ss_pred HhccCCEEEEEcCCceeecCcc---cHHHh-cCCCCcEEEE
Confidence 356889999999994 556753 34455 3778776543
No 164
>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]
Probab=34.68 E-value=1.9e+02 Score=24.20 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=41.5
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhc-----cCCCccEEEEEcCCCCCChHHHHHHHHHHhcC
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRS-----YVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQN 71 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a-----~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~d 71 (162)
++.=|+-|.+.| |.--|-+...+. +++.+--|+++|-|+.++.--|.+++++=...
T Consensus 39 ~~vEi~Gp~~sg-Kt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q 99 (293)
T KOG2859|consen 39 TLVEISGPGNSG-KTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQ 99 (293)
T ss_pred cEEEEeCCCCcc-HHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHH
Confidence 455566677777 888887766654 34556789999999999999988888774333
No 165
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=33.90 E-value=2.4e+02 Score=23.51 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=36.4
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCCh-------HHHHHHHHHHh
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEP-------DYLRRAIPYLV 69 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~p-------d~L~~lv~~f~ 69 (162)
.++.++..+...|. ++|+-.+.... . +.++++++ .|...++ --+++++..+.
T Consensus 97 ~~i~~~~q~~~lGt-g~Av~~a~~~l-~-~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 97 VTIMNVRQAQPLGL-GHSILCARPVV-G-DNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred ceEEEeeCCCcCch-HHHHHHHHHHh-C-CCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence 45777777766784 89999999886 1 34566666 8877654 36777877663
No 166
>PF12516 DUF3719: Protein of unknown function (DUF3719); InterPro: IPR022194 This domain family is found in eukaryotes, and is approximately 70 amino acids in length. There is a conserved HLR sequence motif. There are two completely conserved residues (W and H) that may be functionally important.
Probab=32.66 E-value=50 Score=21.87 Aligned_cols=20 Identities=25% Similarity=0.702 Sum_probs=17.3
Q ss_pred HHHHHHHHHhcCCCEEEEEe
Q 037406 2 VEQECQRWAAKGINIRYESR 21 (162)
Q Consensus 2 i~~~v~~l~~~~~~v~~i~~ 21 (162)
++++|++|....|.+|++-+
T Consensus 14 L~~Ec~eW~~~fpHLRv~G~ 33 (68)
T PF12516_consen 14 LQEECQEWTSRFPHLRVLGK 33 (68)
T ss_pred HHHHHHHHHHhCCeEEEecc
Confidence 57899999999999988854
No 167
>PF06718 DUF1203: Protein of unknown function (DUF1203); InterPro: IPR009593 This family consists of several hypothetical bacterial proteins of around 155 residues in length. Family members are present in Rhizobium, Agrobacterium and Streptomyces species.
Probab=32.35 E-value=62 Score=23.69 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=25.7
Q ss_pred cCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 40 YVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 40 ~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
|+.++-++ +++.....+.-..+-..| +||+|..|.-+
T Consensus 68 Y~a~~~iv---~g~v~~g~~~~~~l~~~f-a~p~VayVHvr 104 (117)
T PF06718_consen 68 YDADGRIV---TGRVVEGADIEARLAELF-ADPEVAYVHVR 104 (117)
T ss_pred EcCCCCEE---eeeEEcchhHHHHHHHHh-cCCCceEEEee
Confidence 44444444 888777777555555666 89999999765
No 168
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=32.16 E-value=1.4e+02 Score=23.65 Aligned_cols=51 Identities=18% Similarity=0.071 Sum_probs=34.6
Q ss_pred CEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChH--HHHHHHHHHh
Q 037406 15 NIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPD--YLRRAIPYLV 69 (162)
Q Consensus 15 ~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd--~L~~lv~~f~ 69 (162)
++.+.......| -++++-.+++.. ..+-++++-+|.....+ -+.+++..+.
T Consensus 94 ~i~~~~~~~~~G-~~~al~~~~~~~---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 94 TIFYVRQKEQKG-LGHAVLCAEPFV---GDEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred eEEEEecCCCCC-HHHHHHHHHHhh---CCCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 455554444466 588999888876 44556777788776543 6788888774
No 169
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=30.52 E-value=82 Score=27.15 Aligned_cols=65 Identities=12% Similarity=0.160 Sum_probs=44.7
Q ss_pred CCCccEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeEEEecceeeecCCcc----HHHHHHHHHHHHHHhhh
Q 037406 41 VKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQNSDIALVQARWRFAKEAKE----LTEARANNEAKAELESR 106 (162)
Q Consensus 41 ~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~dp~vg~V~~~~~~~N~~~~----l~~~~~~~ey~~~~~~~ 106 (162)
.+.-+||++++.|..+ ++..|..++..| ...++.++|-+-.+.|.... ......++-|.+.+++.
T Consensus 116 ~~~~~yivVvEddnT~~~~~~l~~~I~aM-~~k~idilQLre~~~~~~~rt~~~~~~~p~~~~Y~GGyD~S 185 (325)
T PF03213_consen 116 DPEDKYIVVVEDDNTLRDITTLHPIIKAM-KKKNIDILQLRETYHNSNVRTLLPQEGNPSMYSYTGGYDVS 185 (325)
T ss_pred cCCCCeEEEEeCCCcccccHHHHHHHHHH-HHcCceEEEEehhhhccccccccccccCcceeeecCcccee
Confidence 3367899999999666 579999999999 67799999988766654221 12223344555555543
No 170
>PRK05580 primosome assembly protein PriA; Validated
Probab=30.00 E-value=4.5e+02 Score=24.71 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=10.6
Q ss_pred ccEEEEEcCCCCCC
Q 037406 44 CEYVAIFDVDFRLE 57 (162)
Q Consensus 44 ge~i~i~DAD~~~~ 57 (162)
-..|+++|||..+.
T Consensus 499 v~lV~il~aD~~l~ 512 (679)
T PRK05580 499 VTLVGVLDADLGLF 512 (679)
T ss_pred cCEEEEEcCchhcc
Confidence 36799999996653
No 171
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=29.03 E-value=51 Score=24.89 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=28.1
Q ss_pred CEEEEEeCCCCCC-hHHHHHHHHHhccC-CCccEEEEEcCCCCCChHH
Q 037406 15 NIRYESRENRTGY-KAGALKEGLKRSYV-KHCEYVAIFDVDFRLEPDY 60 (162)
Q Consensus 15 ~v~~i~~~~~~G~-KagAlN~gl~~a~~-~~ge~i~i~DAD~~~~pd~ 60 (162)
.|-++....+.-| |+.-+|.|...|.. ...|.+++=|.|.+|..|.
T Consensus 81 ~I~vieQ~~~~~FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~~ 128 (136)
T PF13733_consen 81 RIFVIEQVDNGPFNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPENDR 128 (136)
T ss_dssp EEEEEEE-SSS---HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBTT
T ss_pred EEEEEeeccCCCCchhhhhhHHHHHHhhccCCCEEEEecccccccCCC
Confidence 4555655544333 77788988776632 2589999999999987653
No 172
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=28.88 E-value=88 Score=29.78 Aligned_cols=57 Identities=19% Similarity=0.329 Sum_probs=33.9
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHh----cCCCeEEEecceeee
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLV----QNSDIALVQARWRFA 84 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~----~dp~vg~V~~~~~~~ 84 (162)
|+-++=.|+-.|-...-+||.|+|||..+|--..+....+.. +.....+|--.|.+.
T Consensus 149 k~egm~~g~~la~~~g~~yvgfidadny~pg~v~ey~~~yaag~~~~~~~~~mvri~w~~k 209 (694)
T PRK14502 149 KAEGMILGIILTMFSGRDYVGFIDTDNYIPGAVWEYAKHFATGFNLAQSPYSMVRILWKYK 209 (694)
T ss_pred cchHHHHHHHHHHhcCCceEeEeeccCCCCchHHHHHHHHHhhhcccCCCCeeEEEEecCC
Confidence 777777776655223568999999998887544433333221 122356665555543
No 173
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=28.86 E-value=2.6e+02 Score=21.25 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=34.7
Q ss_pred EEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCC-CChHHHHHHHHHHhcCCCe
Q 037406 16 IRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFR-LEPDYLRRAIPYLVQNSDI 74 (162)
Q Consensus 16 v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~-~~pd~L~~lv~~f~~dp~v 74 (162)
+.++.++.....-......++........++++.+.+|+. .+|..+.+++..+.+.+..
T Consensus 61 ~~v~~~~~~~~~~~~r~~~~~~~~~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 61 AKVIFRRGSLADDTDRFIEAIKHFLADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp SEEEE--TTSSSHHHHHHHHHHHHTCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred CeeEEcChhhcCCcccHHHHHHHhhhhHHhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 3444443332222344566676651112349999999955 4899999999999776543
No 174
>PRK05434 phosphoglyceromutase; Provisional
Probab=28.13 E-value=4.7e+02 Score=23.93 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHH---HHhcc---CCCccEEEEEcCCCCCCh---HHHHHHHHHHhcCC-
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEG---LKRSY---VKHCEYVAIFDVDFRLEP---DYLRRAIPYLVQNS- 72 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~g---l~~a~---~~~ge~i~i~DAD~~~~p---d~L~~lv~~f~~dp- 72 (162)
.+.+++.++.+..++++-.-...| -.+-+++- ++.+. .++--+=+|+|--..+|. .||+++...+.+..
T Consensus 99 ~~~~~~~~~~~~~lHl~GL~Sdgg-VHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~i~~l~~~~~~~~~ 177 (507)
T PRK05434 99 LDAIDKAKKNGGALHLMGLLSDGG-VHSHIDHLFALLELAKEEGVKKVYVHAFLDGRDTPPKSALGYLEELEAKLAELGV 177 (507)
T ss_pred HHHHHHHHhcCCeEEEEEeccCCC-cccHHHHHHHHHHHHHHcCCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHHhCC
Confidence 456666666677899887765545 34445553 22221 112235689999888886 88888888885433
Q ss_pred -CeEEEecceeeecCCccHHHHHHHHHH
Q 037406 73 -DIALVQARWRFAKEAKELTEARANNEA 99 (162)
Q Consensus 73 -~vg~V~~~~~~~N~~~~l~~~~~~~ey 99 (162)
.++-|+||.....++..|.+.+..|+.
T Consensus 178 ~~iasv~GRyyamDRd~rw~rv~~a~~~ 205 (507)
T PRK05434 178 GRIASVSGRYYAMDRDKRWDRVEKAYDA 205 (507)
T ss_pred eeEEEEeccccccccccchHHHHHHHHH
Confidence 688889987777787778777765544
No 175
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=27.64 E-value=2.6e+02 Score=20.82 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=30.4
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCC-ChHHHHHHHHHHhcC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRL-EPDYLRRAIPYLVQN 71 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~-~pd~L~~lv~~f~~d 71 (162)
-..++-.|++.+...+.|+++++=+|.-. +++.+++++..+...
T Consensus 59 pl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 59 PLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 34555555654312257999999999655 899999999877433
No 176
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=26.93 E-value=2.8e+02 Score=21.00 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCC--ChHHHHHHHHHhccCCCccEEEEEcCC--CCCChHHHHHHHHHH
Q 037406 3 EQECQRWAAKGINIRYESRENRTG--YKAGALKEGLKRSYVKHCEYVAIFDVD--FRLEPDYLRRAIPYL 68 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G--~KagAlN~gl~~a~~~~ge~i~i~DAD--~~~~pd~L~~lv~~f 68 (162)
.+.+++|++++.++-++....... .+......++.. ..+.|+..+.. ..|.|+.+..++..+
T Consensus 100 ~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~----~fd~v~~s~~~~~~KP~p~~~~~~~~~~ 165 (211)
T TIGR02247 100 MAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMA----LFDAVVESCLEGLRKPDPRIYQLMLERL 165 (211)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHh----hCCEEEEeeecCCCCCCHHHHHHHHHHc
Confidence 456677776665555554321111 111111122221 23455444332 467777777777776
No 177
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=26.67 E-value=2.6e+02 Score=23.77 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=38.9
Q ss_pred CCCEEEEEeCCCCCChHHHHHHHHHhccCCC-ccEEEEEcCCCCCChHHHHHHHHHHhc
Q 037406 13 GINIRYESRENRTGYKAGALKEGLKRSYVKH-CEYVAIFDVDFRLEPDYLRRAIPYLVQ 70 (162)
Q Consensus 13 ~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~-ge~i~i~DAD~~~~pd~L~~lv~~f~~ 70 (162)
++++.|...++..| -|.|+-.|-++. . .++++++. |.++.- =|++.+.+|.+
T Consensus 72 gv~itY~~Q~~p~G-lA~Av~~a~~fv---~~~~f~l~LG-DNi~~~-~l~~~~~~~~~ 124 (286)
T COG1209 72 GVDITYAVQPEPDG-LAHAVLIAEDFV---GDDDFVLYLG-DNIFQD-GLSELLEHFAE 124 (286)
T ss_pred CcceEEEecCCCCc-HHHHHHHHHhhc---CCCceEEEec-Cceecc-ChHHHHHHHhc
Confidence 77999999998888 588998888887 5 55666665 555555 67777777743
No 178
>PRK10122 GalU regulator GalF; Provisional
Probab=26.38 E-value=2.7e+02 Score=23.14 Aligned_cols=52 Identities=12% Similarity=0.134 Sum_probs=36.1
Q ss_pred CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChH-------HHHHHHHHHh
Q 037406 14 INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPD-------YLRRAIPYLV 69 (162)
Q Consensus 14 ~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd-------~L~~lv~~f~ 69 (162)
.++.++..+...|. ++|+-.+.... ++.+++++. .|....++ -+.+++..+.
T Consensus 97 ~~i~~~~q~~~lGt-g~al~~a~~~l--~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~ 155 (297)
T PRK10122 97 VTIMNVRQGQPLGL-GHSILCARPAI--GDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFN 155 (297)
T ss_pred ceEEEeecCCcCch-HHHHHHHHHHc--CCCCEEEEE-CCeeccCccccccchhHHHHHHHHH
Confidence 45777777666774 99999999885 235677777 88777543 3677777653
No 179
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=26.11 E-value=1.3e+02 Score=17.97 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=13.3
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q 037406 119 QALEELRQTLSRIKQQVFAL 138 (162)
Q Consensus 119 gal~~~r~~~~~~~~~~~~~ 138 (162)
--|.++|+++.+..+.+-.+
T Consensus 11 EIL~EvrkEl~K~K~EIIeA 30 (40)
T PF08776_consen 11 EILEEVRKELQKVKEEIIEA 30 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34678888888777764433
No 180
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=25.63 E-value=3.2e+02 Score=21.09 Aligned_cols=50 Identities=10% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhc-CCCeEEEe
Q 037406 23 NRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQ-NSDIALVQ 78 (162)
Q Consensus 23 ~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~-dp~vg~V~ 78 (162)
...| -++++-.+.+.. ..+ ++++.+|.+.+.+. ..++..+.. +..+.++.
T Consensus 85 ~~~g-t~~al~~~~~~i---~~d-~lv~~~D~i~~~~l-~~~l~~h~~~~~~~t~~~ 135 (214)
T cd04198 85 EDMG-TADSLRHIRKKI---KKD-FLVLSCDLITDLPL-IELVDLHRSHDASLTVLL 135 (214)
T ss_pred CCcC-hHHHHHHHHhhc---CCC-EEEEeCccccccCH-HHHHHHHhccCCcEEEEE
Confidence 3356 578888888875 544 78889997766554 555555533 33444443
No 181
>COG1671 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=1.3e+02 Score=23.12 Aligned_cols=34 Identities=15% Similarity=0.020 Sum_probs=27.3
Q ss_pred EEEcCCCCCChHHHHHHHHHHhcCCCeEEEecceee
Q 037406 48 AIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARWRF 83 (162)
Q Consensus 48 ~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~~~ 83 (162)
+++|||..|-.+.+.+....+ .-.|-+|.....+
T Consensus 4 I~VDADACPVk~~i~r~A~r~--~~~v~~Van~~~~ 37 (150)
T COG1671 4 IWVDADACPVKDEIYRVAERM--GLKVTFVANFPHR 37 (150)
T ss_pred EEEeCCCCchHHHHHHHHHHh--CCeEEEEeCCCcc
Confidence 689999999999999998887 4577788765433
No 182
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=25.46 E-value=1.1e+02 Score=25.00 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecc
Q 037406 43 HCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQAR 80 (162)
Q Consensus 43 ~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~ 80 (162)
+.+|+++.|.|+.+.++-|.+++..| ||.-...-|.
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~--~~~~~~yiG~ 121 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKY--DPSEPIYIGR 121 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS---TTS--EEE-
T ss_pred CceEEEEEeCCceecHHHHHHHHhhC--CCccCEEeee
Confidence 67999999999999999999999998 4443333344
No 183
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=24.78 E-value=2.2e+02 Score=22.89 Aligned_cols=41 Identities=12% Similarity=-0.076 Sum_probs=25.1
Q ss_pred CCEEEEEeCCCCCChHH-HHHHHHHhccCCCccEEEEEcCCCCC
Q 037406 14 INIRYESRENRTGYKAG-ALKEGLKRSYVKHCEYVAIFDVDFRL 56 (162)
Q Consensus 14 ~~v~~i~~~~~~G~Kag-AlN~gl~~a~~~~ge~i~i~DAD~~~ 56 (162)
.++..+.-.+..-+|+- +.|.|...+ ..|.=++++|+|..-
T Consensus 103 ~~vi~vts~~~g~Gktt~a~nLA~~la--~~g~~VllID~D~~~ 144 (274)
T TIGR03029 103 RKALAVVSAKSGEGCSYIAANLAIVFS--QLGEKTLLIDANLRD 144 (274)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCCCCC
Confidence 34444433332223775 778777766 247788899999654
No 184
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=24.63 E-value=2.8e+02 Score=23.66 Aligned_cols=71 Identities=21% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcCCCeEEEecce
Q 037406 2 VEQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQNSDIALVQARW 81 (162)
Q Consensus 2 i~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~dp~vg~V~~~~ 81 (162)
+.+.+..-++++.+++++-.+.++++-...+-..|+++ .=+..++.|+ .+.+|.++-+.-+|++.-
T Consensus 132 v~~~l~~A~~~~k~~~V~VtESRP~~eG~~~ak~L~~~---gI~~~~I~Ds-----------a~~~~~~~vd~VivGad~ 197 (301)
T COG1184 132 VLEVLKTAADRGKRFKVIVTESRPRGEGRIMAKELRQS---GIPVTVIVDS-----------AVGAFMSRVDKVLVGADA 197 (301)
T ss_pred HHHHHHHhhhcCCceEEEEEcCCCcchHHHHHHHHHHc---CCceEEEech-----------HHHHHHHhCCEEEECccc
Confidence 34566666667777888877777665455566677776 5588888885 444554556666777766
Q ss_pred eeecC
Q 037406 82 RFAKE 86 (162)
Q Consensus 82 ~~~N~ 86 (162)
...|.
T Consensus 198 I~~nG 202 (301)
T COG1184 198 ILANG 202 (301)
T ss_pred eecCC
Confidence 55553
No 185
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=24.33 E-value=72 Score=26.24 Aligned_cols=31 Identities=23% Similarity=0.185 Sum_probs=20.7
Q ss_pred HHHHHHhccCCCccEEEEEcCCCCC--ChHHHHH
Q 037406 32 LKEGLKRSYVKHCEYVAIFDVDFRL--EPDYLRR 63 (162)
Q Consensus 32 lN~gl~~a~~~~ge~i~i~DAD~~~--~pd~L~~ 63 (162)
.+..++.. ..+.|=|+++|||.+| +|+.|-.
T Consensus 80 ~~K~lA~l-~ssFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 80 QNKWLALL-FSSFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred hhhhhhhh-hCCcceEEEEcCCcccccCHHHHhc
Confidence 34444432 3488999999999988 4555443
No 186
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif. This family includes a number of Caenorhabditis elegans homologues where the DXD is replaced by DXH. Some members of this family are included in glycosyltransferase family 34.; GO: 0016758 transferase activity, transferring hexosyl groups, 0016021 integral to membrane; PDB: 2P72_B 2P73_A 2P6W_A.
Probab=24.17 E-value=68 Score=26.02 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhccCCCccEEEEEcCCCCCC
Q 037406 28 KAGALKEGLKRSYVKHCEYVAIFDVDFRLE 57 (162)
Q Consensus 28 KagAlN~gl~~a~~~~ge~i~i~DAD~~~~ 57 (162)
|..++..+|..- +++|||..+|+|+++.
T Consensus 63 K~~~lr~~m~~~--P~~~wv~~lD~Dali~ 90 (239)
T PF05637_consen 63 KIPALRAAMKKY--PEAEWVWWLDSDALIM 90 (239)
T ss_dssp HHHHHHHHHHH---TT-SEEEEE-TTEEE-
T ss_pred HHHHHHHHHHhC--CCCCEEEEEcCCeEEE
Confidence 888888888662 3789999999997653
No 187
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=23.75 E-value=1.7e+02 Score=25.90 Aligned_cols=46 Identities=28% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHhccCCCccEEEEEcCCCCCChHHH---HHHHHHHhcCCCeEEEec
Q 037406 31 ALKEGLKRSYVKHCEYVAIFDVDFRLEPDYL---RRAIPYLVQNSDIALVQA 79 (162)
Q Consensus 31 AlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L---~~lv~~f~~dp~vg~V~~ 79 (162)
|+|+.+... +++.++++-.|--..|||. +.....++.||.+-+|+.
T Consensus 158 AL~q~F~~~---~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsa 206 (411)
T KOG1413|consen 158 ALNQLFIVF---RESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSA 206 (411)
T ss_pred HHhhHHhhc---CCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeee
Confidence 455555443 8899999999999999875 456677778999999953
No 188
>TIGR00140 hupD hydrogenase expression/formation protein. C at 64 and 67 are believed to be metal binding. Postulated to be involved in processing or hydrogenase. Superfamily suggests that it is a peptidase/protease.
Probab=23.62 E-value=2.1e+02 Score=20.47 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=28.1
Q ss_pred HHHHHHhcC---CCEEEEEeCCCCCChHHHHHHHHHhccCCCccEEEEEcC-CCCCChHHH
Q 037406 5 ECQRWAAKG---INIRYESRENRTGYKAGALKEGLKRSYVKHCEYVAIFDV-DFRLEPDYL 61 (162)
Q Consensus 5 ~v~~l~~~~---~~v~~i~~~~~~G~KagAlN~gl~~a~~~~ge~i~i~DA-D~~~~pd~L 61 (162)
.++++++.+ +++.++.- | ....+..-... .+|.++|+|| +.--+|..+
T Consensus 3 v~~~L~~~~~~~~~v~vid~----g--t~~~~l~~~l~---~~d~viiVDA~~~g~~PG~v 54 (134)
T TIGR00140 3 LVEALQQRYAFPDNVTLLDG----G--TQGLYLLPLIE---SADRLIILDAVDYGLEPGTL 54 (134)
T ss_pred HHHHHHHhCCCCCCeEEEec----C--ccHHHHHHHHh---cCCeEEEEecccCCCCCceE
Confidence 456665542 36777732 2 12356655555 7899999997 333345443
No 189
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=23.53 E-value=1.4e+02 Score=25.99 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=38.8
Q ss_pred HHHHHHHHhcCCCEEEEEeC-----CCCC----ChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHH
Q 037406 3 EQECQRWAAKGINIRYESRE-----NRTG----YKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRA 64 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~-----~~~G----~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~l 64 (162)
++++.++++++|...-+.-| .+.- .+.+=.|+++... ++++|++-+|+|.+..++-|-+.
T Consensus 128 ~Eiil~fckkyP~fip~~Ypy~v~~~n~~~~~n~l~~YYNy~ls~i--pk~~w~iKID~DhIy~~~KL~ks 196 (347)
T PF06306_consen 128 EEIILEFCKKYPSFIPIKYPYEVIIKNPKSEENSLYNYYNYVLSFI--PKNEWAIKIDADHIYDTKKLYKS 196 (347)
T ss_pred HHHHHHHHHhCcccccccCcchhhccCCchhhhhhhhhhhhhhccc--ccceEEEEeccceeecHHHHhhh
Confidence 57888888887753211111 1111 1344456676664 47999999999999999987544
No 190
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=23.51 E-value=99 Score=31.51 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=19.4
Q ss_pred HHHhccCCCccEEEEEcCCCCCChHHH
Q 037406 35 GLKRSYVKHCEYVAIFDVDFRLEPDYL 61 (162)
Q Consensus 35 gl~~a~~~~ge~i~i~DAD~~~~pd~L 61 (162)
||..+ .+|=|+|||+|--|.-|.=
T Consensus 765 GINLa---tADTVIIFDSDWNPQNDLQ 788 (1373)
T KOG0384|consen 765 GINLA---TADTVIIFDSDWNPQNDLQ 788 (1373)
T ss_pred ccccc---ccceEEEeCCCCCcchHHH
Confidence 45566 7799999999999987743
No 191
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=23.05 E-value=85 Score=27.94 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=28.7
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHHHHhc
Q 037406 2 VEQECQRWAAKGINIRYESRENRTGYKAGALKEGLKRS 39 (162)
Q Consensus 2 i~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~gl~~a 39 (162)
++|+.+++++++.++||--.|- .|--+|-+|--|..+
T Consensus 328 v~E~~~~L~~~Gv~VrfaIHPV-AGRmPGHMNVLLAEA 364 (463)
T COG1282 328 VAEITEKLRARGVNVRFAIHPV-AGRMPGHMNVLLAEA 364 (463)
T ss_pred HHHHHHHHHhcCCeeeEeeccc-ccCCCcchhhhhhhc
Confidence 6788899999999999976663 344566789888777
No 192
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=22.98 E-value=60 Score=31.42 Aligned_cols=69 Identities=19% Similarity=0.205 Sum_probs=45.3
Q ss_pred ChHHHHHHHHHhccCCCccEEEEEcCCCC--CC-hHHHHHHHHHHhc-----------------CCCeEEEecceeeecC
Q 037406 27 YKAGALKEGLKRSYVKHCEYVAIFDVDFR--LE-PDYLRRAIPYLVQ-----------------NSDIALVQARWRFAKE 86 (162)
Q Consensus 27 ~KagAlN~gl~~a~~~~ge~i~i~DAD~~--~~-pd~L~~lv~~f~~-----------------dp~vg~V~~~~~~~N~ 86 (162)
+|+-|-|+|+-.. +||++=.+|+..- ++ -=-++.++..|+. .+.+.+|+.|-.+...
T Consensus 275 GK~eNQNhaiiF~---rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~ 351 (817)
T PF02364_consen 275 GKPENQNHAIIFT---RGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSE 351 (817)
T ss_pred CCccccceeEEEE---ccccccccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecC
Confidence 4999999999998 9999999999732 21 1224556677753 2467888887555544
Q ss_pred Ccc-HHHHHHHHH
Q 037406 87 AKE-LTEARANNE 98 (162)
Q Consensus 87 ~~~-l~~~~~~~e 98 (162)
+.+ |....+..|
T Consensus 352 ~vg~L~~~aa~qE 364 (817)
T PF02364_consen 352 NVGSLGDFAAGQE 364 (817)
T ss_pred CcchHHHHhhhhh
Confidence 433 444444433
No 193
>KOG3765 consensus Predicted glycosyltransferase [Carbohydrate transport and metabolism]
Probab=22.88 E-value=1e+02 Score=27.18 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=25.6
Q ss_pred HHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHH
Q 037406 30 GALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRA 64 (162)
Q Consensus 30 gAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~l 64 (162)
-..|.|...+ +++|+.+.|.|..|...+-+.+
T Consensus 181 l~RNvAr~ga---~t~~~l~sD~dm~~S~gl~~~~ 212 (386)
T KOG3765|consen 181 LMRNVARKGA---NTDYMLMSDIDMVPSYGLADML 212 (386)
T ss_pred HHHHHHHhhc---CCCcEEEEeeeeeeccchHHHH
Confidence 4578888888 9999999999999976554444
No 194
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=22.39 E-value=67 Score=24.60 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=29.6
Q ss_pred HHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHH
Q 037406 30 GALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYL 68 (162)
Q Consensus 30 gAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f 68 (162)
.+++.+.+.. ++.+|++..|.|..+.++.|.+.+...
T Consensus 69 ~~~~w~~~~c--~~~~~v~k~DDD~~vn~~~l~~~L~~~ 105 (195)
T PF01762_consen 69 AGLKWASKHC--PNAKYVLKVDDDVFVNPDRLVSFLKSL 105 (195)
T ss_pred HHHHHHHhhC--CchhheeecCcEEEEehHHhhhhhhhc
Confidence 4567777765 248999999999999998888877765
No 195
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=22.00 E-value=3.6e+02 Score=20.41 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=32.4
Q ss_pred CCChHHHHHHHHHhccCCCccEEEEEcCCCCCChHHHHHHHHHHhcC-CCeEE
Q 037406 25 TGYKAGALKEGLKRSYVKHCEYVAIFDVDFRLEPDYLRRAIPYLVQN-SDIAL 76 (162)
Q Consensus 25 ~G~KagAlN~gl~~a~~~~ge~i~i~DAD~~~~pd~L~~lv~~f~~d-p~vg~ 76 (162)
.| -++++..|.+..-..+.|.++++-+|.+.+ .-+++++..+... ..+.+
T Consensus 93 ~G-ta~al~~a~~~i~~~~~~~~lv~~gD~v~~-~~~~~~l~~~~~~~~~~t~ 143 (200)
T cd02508 93 RG-TADAIYQNLDYIERSDPEYVLILSGDHIYN-MDYREMLDFHIESGADITV 143 (200)
T ss_pred cC-cHHHHHHHHHHHHhCCCCEEEEecCCEEEe-cCHHHHHHHHHHcCCCEEE
Confidence 56 488898888875111257888999998654 4566777765443 34444
No 196
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=21.40 E-value=1.8e+02 Score=23.34 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=19.3
Q ss_pred hHH-HHHHHHHhccCCCccEEEEEcCCCCCC
Q 037406 28 KAG-ALKEGLKRSYVKHCEYVAIFDVDFRLE 57 (162)
Q Consensus 28 Kag-AlN~gl~~a~~~~ge~i~i~DAD~~~~ 57 (162)
|.- +.|.|...+ .+|.=++++|+|.+-+
T Consensus 15 KTT~a~nLA~~la--~~G~~VlliD~DpQ~s 43 (231)
T PRK13849 15 KTTALMGLCAALA--SDGKRVALFEADENRP 43 (231)
T ss_pred HHHHHHHHHHHHH--hCCCcEEEEeCCCCCC
Confidence 663 666665544 2677889999997765
No 197
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=21.37 E-value=6.4e+02 Score=23.11 Aligned_cols=96 Identities=11% Similarity=0.091 Sum_probs=64.1
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCChHHHHHHH---HHhcc---CCCccEEEEEcCCCCCCh---HHHHHHHHHHhcC--
Q 037406 3 EQECQRWAAKGINIRYESRENRTGYKAGALKEG---LKRSY---VKHCEYVAIFDVDFRLEP---DYLRRAIPYLVQN-- 71 (162)
Q Consensus 3 ~~~v~~l~~~~~~v~~i~~~~~~G~KagAlN~g---l~~a~---~~~ge~i~i~DAD~~~~p---d~L~~lv~~f~~d-- 71 (162)
.+.+++.++.+..++++-.-...| -.+-+++- ++.+. .++-=+=+|+|--..+|. .||+++...+..-
T Consensus 95 ~~~~~~~~~~~~~lHl~GL~SdGg-VHsh~~hl~~l~~~a~~~g~~~v~vH~~~DGRD~~p~s~~~~~~~l~~~~~~~~~ 173 (501)
T TIGR01307 95 LGAIDRAKDNNGKLHLMGLVSDGG-VHSHIDHLIALIELAAERGIEKVVLHAFTDGRDTAPKSAESYLEQLQAFLKEIGN 173 (501)
T ss_pred HHHHHHHHhcCCceEEEEeccCCC-CcchHHHHHHHHHHHHHcCCCeEEEEEecCCCCCCchhHHHHHHHHHHHHHHhCC
Confidence 456666666677899987765544 33344543 22221 112236689999988886 8888888888531
Q ss_pred CCeEEEecceeeecCCccHHHHHHHHHH
Q 037406 72 SDIALVQARWRFAKEAKELTEARANNEA 99 (162)
Q Consensus 72 p~vg~V~~~~~~~N~~~~l~~~~~~~ey 99 (162)
-.++-|+||.....++..|.+.+..|+.
T Consensus 174 ~~iasv~GRyyaMDRd~rw~rv~~ay~~ 201 (501)
T TIGR01307 174 GRIATISGRYYAMDRDQRWDRVEIAYKA 201 (501)
T ss_pred EEEEEEeCcceeecCccchHHHHHHHHH
Confidence 3788899998777888788777766544
No 198
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.20 E-value=3.3e+02 Score=20.66 Aligned_cols=27 Identities=15% Similarity=0.088 Sum_probs=17.7
Q ss_pred hHH-HHHHHHHhccCCCccEEEEEcCCCCC
Q 037406 28 KAG-ALKEGLKRSYVKHCEYVAIFDVDFRL 56 (162)
Q Consensus 28 Kag-AlN~gl~~a~~~~ge~i~i~DAD~~~ 56 (162)
|+- +.|.|...+ ..|.=++++|+|.+-
T Consensus 31 KTt~a~~LA~~la--~~G~rVllID~D~~~ 58 (204)
T TIGR01007 31 KSTTSANIAVAFA--QAGYKTLLIDGDMRN 58 (204)
T ss_pred HHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 763 556555544 246669999999764
Done!