BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037407
         (216 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EBH|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
          Length = 746

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 136 TKVDFIWY-YEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPK---------WQAPVYC 185
           +  D I +  +D V   P     Y G   + I F V  V+ED           W+ P Y 
Sbjct: 170 STADLIRFALQDTVISAPFRG--YAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYE 227

Query: 186 FGNEGEERPLLNSVVTDSSSGKLI 209
             NEG    LL  ++ +S S  ++
Sbjct: 228 SWNEGSNSALLPGLLRESQSKGML 251


>pdb|2EC5|A Chain A, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
 pdb|2EC5|B Chain B, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
          Length = 746

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 136 TKVDFIWY-YEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPK---------WQAPVYC 185
           +  D I +  +D V   P     Y G   + I F V  V+ED           W+ P Y 
Sbjct: 170 STADLIRFALQDTVISAPFRG--YAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYE 227

Query: 186 FGNEGEERPLLNSVVTDSSSGKLI 209
             NEG    LL  ++ +S S  ++
Sbjct: 228 SWNEGSNSALLPGLLRESQSKGML 251


>pdb|2EBF|X Chain X, Crystal Structures Reveal A Thiol-Protease Like Catalytic
           Triad In The C-Terminal Region Of Pasteurella Multocida
           Toxin
          Length = 746

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 136 TKVDFIWY-YEDVVTKRPVHWAFYTGYTADVITFEVGAVLEDPK---------WQAPVYC 185
           +  D I +  +D V   P     Y G   + I F V  V+ED           W+ P Y 
Sbjct: 170 STADLIRFALQDTVISAPFRG--YAGAIPEAIDFPVKYVIEDISVFDKIQTNYWELPAYE 227

Query: 186 FGNEGEERPLLNSVVTDSSSGKLI 209
             NEG    LL  ++ +S S  ++
Sbjct: 228 SWNEGSNSALLPGLLRESQSKGML 251


>pdb|2C8I|A Chain A, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
           Its Receptor Decay Accelerating Factor (Cd55) By Cryo
           Electron Microscopy At 16 A
          Length = 289

 Score = 26.6 bits (57), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 15/50 (30%), Positives = 22/50 (44%)

Query: 22  FLITSKSTDAAPVPAPWPPQFHAILFMNNSGTLQKVDLWYDWPNGRNFNI 71
           F+ITSK      +    PP  H I+++   G + K    Y W    N +I
Sbjct: 121 FVITSKQDQGTQLGQDMPPLTHQIMYIPPGGPIPKSVTDYTWQTSTNPSI 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.459 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,338,552
Number of Sequences: 62578
Number of extensions: 333634
Number of successful extensions: 634
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 632
Number of HSP's gapped (non-prelim): 6
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)