Query 037407
Match_columns 216
No_of_seqs 54 out of 56
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 20:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bmz_A Putative uncharacterize 69.4 26 0.00088 29.9 8.7 121 34-156 5-161 (199)
2 3buu_A Uncharacterized LOLA su 44.6 63 0.0022 25.4 6.7 42 118-159 116-165 (229)
3 3bk5_A Putative outer membrane 43.9 64 0.0022 25.7 6.7 51 118-168 125-185 (237)
4 3m4f_A Endo-1,4-beta-xylanase; 41.4 39 0.0013 29.0 5.2 59 80-153 50-115 (205)
5 3m4w_A Sigma-E factor regulato 39.2 66 0.0022 28.0 6.5 125 51-177 29-174 (295)
6 3s79_A Cytochrome P450 19A1; o 20.5 35 0.0012 29.1 1.3 13 28-40 43-55 (503)
7 3plv_C 66 kDa U4/U6.U5 small n 13.1 66 0.0023 18.5 0.9 12 69-80 7-19 (21)
8 3hrd_A Nicotinate dehydrogenas 9.7 1.3E+02 0.0046 27.1 2.1 25 148-172 257-289 (425)
9 2jxw_A WW domain-binding prote 9.4 4.7E+02 0.016 17.8 5.2 51 86-150 13-66 (75)
10 1bmw_A PHL P II, pollen allerg 8.6 1.2E+02 0.004 22.5 1.1 17 108-124 79-95 (96)
No 1
>3bmz_A Putative uncharacterized protein; violacein, biosynthetic protein; HET: PG4 PGE; 1.21A {Chromobacterium violaceum} PDB: 2zf3_A 2zf4_A*
Probab=69.41 E-value=26 Score=29.89 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=75.6
Q ss_pred CCCCCchhhhheeee-----cCCCCCcceeeeeeCCCCcchhhhhhhh--------cCeeeeeee---cCCeeEE----E
Q 037407 34 VPAPWPPQFHAILFM-----NNSGTLQKVDLWYDWPNGRNFNIIQNQL--------GKLTYDLEW---DNGTSYI----Y 93 (216)
Q Consensus 34 ~Pp~WP~qFHa~l~~-----N~~G~l~~~dlyYDwp~gRn~niiq~Ql--------~~~lyD~Ew---~NgTsfy----~ 93 (216)
+||-=|.|+.+.... -....+.-.--|+||. ||.=-|-+-+ |..|+--|- +-|-||= |
T Consensus 5 ~pPLLP~qWSSaYiSYW~PMq~dD~iTSGYCWFDY~--rniCRIDGlFNPWsE~~~GhrLWMSEIg~a~~~~s~KqKVaY 82 (199)
T 3bmz_A 5 EPPLLPARWSSAYVSYWSPMLPDDQLTSGYCWFDYE--RDICRIDGLFNPWSERDTGYRLWMSEVGNAASGRTWKQKVAY 82 (199)
T ss_dssp CCCCCCSEEEEEEEEEEESCCTTCCCEEEEEEEETT--TTEEEEEEECSSCCHHHHSEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCcChhhhhhhhhhhccCCCcccccccceeeeecc--cCeeeeccccCCCcccccchhhhhhhhcCcccchhHHHHHHH
Confidence 688888899887662 2334444457899998 6655553333 555553221 1222221 1
Q ss_pred ecC----Ccccee-ee-----ccCccCCCCCcc--ccceecCeeeeCceeeeeee--ecC--cEEEEEeeccCCceEEe
Q 037407 94 TLD----ANKECR-VL-----HFPVGILRPSWL--DGAEYLGQKYVDKFLCNVWT--KVD--FIWYYEDVVTKRPVHWA 156 (216)
Q Consensus 94 ~l~----~~~~Cr-~~-----~~~vGiL~PdWL--~gA~YlG~~~v~G~~C~vW~--K~d--fi~Yyedv~t~rPVrw~ 156 (216)
.-. -.+-|. +. -|-.=+|+.+=| -+|.|.|+++|=|..-+.|- +++ -..||-+.+++++||=+
T Consensus 83 aRe~~~~g~~l~~~~L~DEv~PfheLfLpq~vL~~~~Ar~~Gr~tVLG~~ad~W~~qRpgK~ps~~Yl~ag~n~llRMv 161 (199)
T 3bmz_A 83 GRERTALGEQLCERPLDDETGPFAELFLPRDVLRRLGARHIGRRVVLGREADGWRYQRPGKGPSTLYLDAASGTPLRMV 161 (199)
T ss_dssp EEEEETTEEEEEEEECCCEEEECCSCSSCTTHHHHTTCEEEEEEEETTEEEEEEEEEETTTEEEEEEEETTTCCEEEEE
T ss_pred HhhhhhhHHHHHHhhhccccCcHHHHhccHHHHHhccccccceeeeeccccceeeeecCCCCCeeEEEEcCCCeEEEEe
Confidence 100 011121 11 122338888888 49999999999999999996 333 47999999999999954
No 2
>3buu_A Uncharacterized LOLA superfamily protein NE2245; PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.20A {Nitrosomonas europaea atcc 19718}
Probab=44.56 E-value=63 Score=25.42 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=34.5
Q ss_pred cceecCeeeeCceeeeeeee---cC---c--EEEEEeeccCCceEEeeeC
Q 037407 118 GAEYLGQKYVDKFLCNVWTK---VD---F--IWYYEDVVTKRPVHWAFYT 159 (216)
Q Consensus 118 gA~YlG~~~v~G~~C~vW~K---~d---f--i~Yyedv~t~rPVrw~F~~ 159 (216)
..+++|+++++|..|.|=+- .+ + +.+|=|..|..|++-.+++
T Consensus 116 ~~~l~g~~~v~g~~~~vl~~~pk~~~~~y~k~~lwiD~~t~~p~k~~~~d 165 (229)
T 3buu_A 116 HPQLLRNESIDDEDYYVLELTGIDRSVTYQKVLLWVNQSNFRPYKAEFYS 165 (229)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESSTTSSCSEEEEEEETTTCCEEEEEEEC
T ss_pred ceEEeeeeeeCCeeEEEEEEEecCCCCceEEEEEEEECCCCcEEEEEEEc
Confidence 45789999999999988762 22 2 6789999999999998885
No 3
>3bk5_A Putative outer membrane lipoprotein-sorting prote; putative outer membrane protein domain, PSI-2, protein struc initiative; HET: MSE; 2.00A {Vibrio parahaemolyticus rimd 2210633}
Probab=43.89 E-value=64 Score=25.68 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=38.6
Q ss_pred cceecCeeeeCceeeeeee---ecC---c--EEEEEeeccCCceEEeeeC--CccceEEEE
Q 037407 118 GAEYLGQKYVDKFLCNVWT---KVD---F--IWYYEDVVTKRPVHWAFYT--GYTADVITF 168 (216)
Q Consensus 118 gA~YlG~~~v~G~~C~vW~---K~d---f--i~Yyedv~t~rPVrw~F~~--G~~~hvmtF 168 (216)
..+++|++.++|..|.|=+ |.+ + +.+|=|..|..|++-.+++ |...-.++|
T Consensus 125 ~~~l~g~~~~~g~~~~vl~~~pk~~~~~y~k~~~wiD~~t~~~~k~~~~d~~G~l~~~~~~ 185 (237)
T 3bk5_A 125 RFNHLKDEKFNGQDVFVLEQIPTDKNSGYTKQVVWLDKAHYRPLKVEFYDRKGALLKTLTF 185 (237)
T ss_dssp EEEEEEEEEETTEEEEEEEEEESCTTSSEEEEEEEEETTTCCEEEEEEEETTSCEEEEEEE
T ss_pred ceEEeeeeEECCeeEEEEEEEECCCCCCceEEEEEEECCCCeEEEEEEEcCCCCEEEEEEE
Confidence 4688999999999998876 222 1 6789999999999999884 543444444
No 4
>3m4f_A Endo-1,4-beta-xylanase; family 11 endoxylanase, acidophilic adaptation, structure/FU relationship, glycosidase, hydrolase; HET: CXS; 1.89A {Scytalidium acidophilum}
Probab=41.42 E-value=39 Score=29.04 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=38.0
Q ss_pred eeeeeecCCeeEEEecC-CccceeeeccCccCCCCCccccceecCeeeeCc----eeeeeeeecCcEEEE--EeeccCCc
Q 037407 80 TYDLEWDNGTSYIYTLD-ANKECRVLHFPVGILRPSWLDGAEYLGQKYVDK----FLCNVWTKVDFIWYY--EDVVTKRP 152 (216)
Q Consensus 80 lyD~Ew~NgTsfy~~l~-~~~~Cr~~~~~vGiL~PdWL~gA~YlG~~~v~G----~~C~vW~K~dfi~Yy--edv~t~rP 152 (216)
-|.++|+|.-.|..-.. ..-.=| --+|.|.-..+| .-.-+|.+...|-|| |+-.+-+|
T Consensus 50 ~fsv~Wsn~gnfv~GKGW~~G~~r---------------~i~Ysg~~~p~G~nsyL~vYGWt~nPLvEYYIve~~g~~~P 114 (205)
T 3m4f_A 50 TYTCGWDGSTDFVVGLGWSTGAAR---------------DITYSATYNAGGSGSYLAVYGWVNSPQAEYYIVESYGDYNP 114 (205)
T ss_dssp EEEEEEESSSCEEEEEEESSCCSC---------------EEEEEEEEECTTSEEEEEEEEEETTTTEEEEEEEEESSCCT
T ss_pred eEEEEEecCCCEEEeccccCCCCE---------------EEEEEEEEccCCCcEEEEEEEeccCCcEEEEEEeeecccCC
Confidence 38888988766654421 000011 235666666555 445699999999999 67778888
Q ss_pred e
Q 037407 153 V 153 (216)
Q Consensus 153 V 153 (216)
.
T Consensus 115 ~ 115 (205)
T 3m4f_A 115 C 115 (205)
T ss_dssp T
T ss_pred C
Confidence 5
No 5
>3m4w_A Sigma-E factor regulatory protein RSEB; RSEA, RSEB, RSEP, stress response, sigma factor, periplasm, membrane, transmembrane; 2.30A {Escherichia coli} PDB: 2p4b_A 2v43_A 2v42_A
Probab=39.18 E-value=66 Score=27.98 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=74.7
Q ss_pred CCCCcceeeeeeCCCCcchhhhhhhhcCeeeeeeecCCeeEEEecCCccceeeecc-CccCCCC---Ccc------ccce
Q 037407 51 SGTLQKVDLWYDWPNGRNFNIIQNQLGKLTYDLEWDNGTSYIYTLDANKECRVLHF-PVGILRP---SWL------DGAE 120 (216)
Q Consensus 51 ~G~l~~~dlyYDwp~gRn~niiq~Ql~~~lyD~Ew~NgTsfy~~l~~~~~Cr~~~~-~vGiL~P---dWL------~gA~ 120 (216)
+|.++...+.--..+|.-+..|...-| +---+.-.|+...||.++. +.+.+... .++.+++ ..+ -..+
T Consensus 29 ~~~i~s~ri~H~~~~~~~~e~L~~LdG-~~reviR~~~~v~~~~p~~-~~~~~~~~~~~~~~p~~l~~~~~~l~~~Y~~~ 106 (295)
T 3m4w_A 29 KQGVESLRYRHARLDNRPLAQLLQMDG-PRREVVQRGNEISYFEPGL-EPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 106 (295)
T ss_dssp TTEEEEEEEEEEECSSSEEEEEEECSS-SCCEEEEETTEEEEECTTS-CCEEEECSSCTTSSCGGGGCCHHHHTTTEEEE
T ss_pred CCeEEEEEEEEEeeCCEEEEEEEEcCC-CcEEEEEECCEEEEEcCCC-ceEEEecccccccCccccccChhHHhhCceEE
Confidence 445555555544555544444433223 2233444577777887543 45555443 2333332 222 1567
Q ss_pred ecCeeeeCceeeeeee---ecCc---EEEEEeeccCCceEEeeeC--Cccc---eEEEEecCCcCCCC
Q 037407 121 YLGQKYVDKFLCNVWT---KVDF---IWYYEDVVTKRPVHWAFYT--GYTA---DVITFEVGAVLEDP 177 (216)
Q Consensus 121 YlG~~~v~G~~C~vW~---K~df---i~Yyedv~t~rPVrw~F~~--G~~~---hvmtFevGavleD~ 177 (216)
.+|+++++|..|.|=+ |.+. ...|=|..|+.|+|..+++ |..- -+..++++..+++.
T Consensus 107 ~~g~erVaGr~~~vv~l~PkD~~ry~y~lWiD~et~lpLk~e~~d~~G~lleq~~~~~l~~~~~i~~~ 174 (295)
T 3m4w_A 107 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 174 (295)
T ss_dssp EEEEEEETTEEEEEEEEEETTSCSCEEEEEEETTTCCEEEEEEECTTSCEEEEEEEEEEEEESSCCHH
T ss_pred EcCceEECCeEEEEEEEEECCCCceeEEEEEEccCCCEEEEEEEcCCCCEEEEEEEEEEEeCCCcchh
Confidence 7999999999999987 3332 4679999999999999984 5332 34456666655443
No 6
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=20.48 E-value=35 Score=29.05 Aligned_cols=13 Identities=23% Similarity=0.207 Sum_probs=8.4
Q ss_pred CCCCCCCCCCCch
Q 037407 28 STDAAPVPAPWPP 40 (216)
Q Consensus 28 ~~~~~P~Pp~WP~ 40 (216)
....+|-|++||-
T Consensus 43 ~~~~pPGP~~~P~ 55 (503)
T 3s79_A 43 GTSSIPGPGYCMG 55 (503)
T ss_dssp --CCCCSCCCCSS
T ss_pred ccCCCCCCCCCce
Confidence 3456778888985
No 7
>3plv_C 66 kDa U4/U6.U5 small nuclear ribonucleoprotein C; ubiquitin-like, peptide binding protein; 1.90A {Saccharomyces cerevisiae}
Probab=13.14 E-value=66 Score=18.51 Aligned_cols=12 Identities=42% Similarity=0.564 Sum_probs=8.8
Q ss_pred hhhhhhhhc-Cee
Q 037407 69 FNIIQNQLG-KLT 80 (216)
Q Consensus 69 ~niiq~Ql~-~~l 80 (216)
-|-||.||| +|+
T Consensus 7 tnk~r~~lGLkpl 19 (21)
T 3plv_C 7 TNELRASLGLKLI 19 (26)
T ss_dssp HHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCCC
Confidence 477899998 553
No 8
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=9.72 E-value=1.3e+02 Score=27.07 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=16.6
Q ss_pred ccCCceEEeee-------C-CccceEEEEecCC
Q 037407 148 VTKRPVHWAFY-------T-GYTADVITFEVGA 172 (216)
Q Consensus 148 ~t~rPVrw~F~-------~-G~~~hvmtFevGa 172 (216)
.++|||||.+- + .+..+.+.+++|.
T Consensus 257 ~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~ 289 (425)
T 3hrd_A 257 HTKKPVKMVRSREESTTVSSKRHPMTMHCKTGA 289 (425)
T ss_dssp HHCSCEEEECCHHHHHHHSCBCCCEEEEEEEEE
T ss_pred HhCCCEEEEeehHHHhhhcCCCCCeEEEEEEEE
Confidence 46899999743 2 3455566777775
No 9
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=9.37 E-value=4.7e+02 Score=17.77 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=25.8
Q ss_pred cCCeeEEEecCCccceeeeccCccCCCCCccccceecCeeeeCceeeeeeeec---CcEEEEEeeccC
Q 037407 86 DNGTSYIYTLDANKECRVLHFPVGILRPSWLDGAEYLGQKYVDKFLCNVWTKV---DFIWYYEDVVTK 150 (216)
Q Consensus 86 ~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL~gA~YlG~~~v~G~~C~vW~K~---dfi~Yyedv~t~ 150 (216)
.+|..|||+... +.|.-. .+.++..+ .-.+..+..|+.. +-..||-...|+
T Consensus 13 ~~G~~YYyN~~T-~~s~We-~P~~~~~~------------~e~~~~~~~W~~~~~~~Gr~YyyN~~T~ 66 (75)
T 2jxw_A 13 SEGYHYYYDLIS-GASQWE-KPEGFQGD------------LKKTAVKTVWVEGLSEDGFTYYYNTETG 66 (75)
T ss_dssp TTTEEEEEETTT-TEEECS-CCSSCSSC------------CSSSSCCCSEEEEEETTTEEEEEETTTT
T ss_pred CCCCEEEEECCC-CCEeec-CCCccccc------------ccccCCCccEEEEECCCCCEEEEECcCC
Confidence 379999999533 333322 22222111 0123455667653 346677666665
No 10
>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A
Probab=8.59 E-value=1.2e+02 Score=22.55 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=14.5
Q ss_pred ccCCCCCccccceecCe
Q 037407 108 VGILRPSWLDGAEYLGQ 124 (216)
Q Consensus 108 vGiL~PdWL~gA~YlG~ 124 (216)
..++|.+|-.|++|-+.
T Consensus 79 ~nViP~~W~~G~ty~~~ 95 (96)
T 1bmw_A 79 DDVVPEKYTIGATYAPE 95 (96)
T ss_dssp SSCSCSSCCSSSCCCC-
T ss_pred eeEeCCCCCCCCEEeCC
Confidence 56999999999999874
Done!