Query 037407
Match_columns 216
No_of_seqs 54 out of 56
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 20:27:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037407.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037407hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1h8ga_ b.109.1.1 (A:) Choline 35.2 15 0.0011 24.8 3.3 55 86-154 1-57 (95)
2 d1sg1x1 g.24.1.1 (X:2-56) Low 21.1 7.3 0.00054 25.8 -0.6 18 97-114 11-28 (55)
3 d2gdga1 d.80.1.3 (A:1-114) Mic 14.7 30 0.0022 24.0 1.4 23 69-91 80-113 (114)
4 d2byoa1 b.125.1.3 (A:20-207) P 13.4 2.1E+02 0.015 21.1 6.3 20 117-136 110-129 (188)
5 d1hfoa_ d.80.1.3 (A:) Micropha 12.7 38 0.0027 23.3 1.5 23 69-91 80-113 (113)
6 d2f2ha3 b.71.1.4 (A:586-665) P 12.5 51 0.0037 21.6 2.1 19 58-76 5-23 (80)
7 d1wzaa1 b.71.1.1 (A:437-515) B 12.0 93 0.0068 21.0 3.3 45 137-185 21-72 (79)
8 d1n10a1 b.7.3.1 (A:1146-1240) 10.7 32 0.0023 23.6 0.5 16 107-122 79-94 (95)
9 d1brta_ c.69.1.12 (A:) Bromope 10.2 81 0.0059 21.4 2.6 17 142-160 15-31 (277)
10 d1uiza_ d.80.1.3 (A:) Micropha 10.2 50 0.0037 22.7 1.5 23 69-91 81-114 (115)
No 1
>d1h8ga_ b.109.1.1 (A:) Choline binding domain of autolysin C-LytA {Streptococcus pneumoniae [TaxId: 1313]}
Probab=35.19 E-value=15 Score=24.83 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=38.2
Q ss_pred cCCeeEEEecCCccceeeeccCccCCCCCccc--cceecCeeeeCceeeeeeeecCcEEEEEeeccCCceE
Q 037407 86 DNGTSYIYTLDANKECRVLHFPVGILRPSWLD--GAEYLGQKYVDKFLCNVWTKVDFIWYYEDVVTKRPVH 154 (216)
Q Consensus 86 ~NgTsfy~~l~~~~~Cr~~~~~vGiL~PdWL~--gA~YlG~~~v~G~~C~vW~K~dfi~Yyedv~t~rPVr 154 (216)
+||.-|||+- + |.+.-.|.. |..|.=.+ +|.....|.+.+-.|||-+-.++..++
T Consensus 1 ~dG~wYy~d~--~----------G~~~tGw~~i~g~wYyfd~--~G~m~tGw~~~~g~~YYf~~~~G~~~~ 57 (95)
T d1h8ga_ 1 TDGNWYWFDN--S----------GEMATGWKKIADKWYYFNE--EGAMKTGWVKYKDTWYYLDAKEGAMVS 57 (95)
T ss_dssp CCEEEEEEET--T----------CCBCCEEEEETTEEEEECT--TSCBCCEEEEETTEEEEECTTTCCBCC
T ss_pred CCCcEEEECC--C----------CCEEEeeEEECCEEEEECC--CCCeEEeEEEECCeEEEEECCCCcEee
Confidence 4777788872 1 444446773 54444222 588888999999999999988887765
No 2
>d1sg1x1 g.24.1.1 (X:2-56) Low affinity neurotrophin receptor p75NTR {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.12 E-value=7.3 Score=25.78 Aligned_cols=18 Identities=17% Similarity=0.554 Sum_probs=16.0
Q ss_pred CccceeeeccCccCCCCC
Q 037407 97 ANKECRVLHFPVGILRPS 114 (216)
Q Consensus 97 ~~~~Cr~~~~~vGiL~Pd 114 (216)
+..+|..+..+.|+.+|=
T Consensus 11 sGeCCs~C~~GeGV~~pC 28 (55)
T d1sg1x1 11 SGECCKACNLGEGVAQPC 28 (55)
T ss_dssp TSCBCCCBCTTEEEEECS
T ss_pred CCceeccCCCCCceeecc
Confidence 677999999999999984
No 3
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.71 E-value=30 Score=23.95 Aligned_cols=23 Identities=22% Similarity=0.536 Sum_probs=15.7
Q ss_pred hhhhhhhhc---Ceee----eee---e-cCCeeE
Q 037407 69 FNIIQNQLG---KLTY----DLE---W-DNGTSY 91 (216)
Q Consensus 69 ~niiq~Ql~---~~ly----D~E---w-~NgTsf 91 (216)
.++|+.+|| +..| |++ | .|||+|
T Consensus 80 ~~~l~~~LgI~~~RiyI~f~d~~~~~~G~nG~TF 113 (114)
T d2gdga1 80 CGLLSDRLHISPDRVYINYYDMNAANVGWNGSTF 113 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHhCCCcceEEEEEEECCHHHeeECcEeC
Confidence 567788887 3344 554 7 888887
No 4
>d2byoa1 b.125.1.3 (A:20-207) Putative lipoprotein LppX {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.43 E-value=2.1e+02 Score=21.15 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=18.2
Q ss_pred ccceecCeeeeCceeeeeee
Q 037407 117 DGAEYLGQKYVDKFLCNVWT 136 (216)
Q Consensus 117 ~gA~YlG~~~v~G~~C~vW~ 136 (216)
.+++..|+|++||..|..+.
T Consensus 110 ~d~~~~G~EtvdG~~t~~~t 129 (188)
T d2byoa1 110 TNLQAQGTEVIDGISTTKIT 129 (188)
T ss_dssp EEEEEEEEEEETTEEEEEEE
T ss_pred CCceeccceEECCEEEEEEE
Confidence 48889999999999999995
No 5
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]}
Probab=12.67 E-value=38 Score=23.31 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=15.3
Q ss_pred hhhhhhhhc---Ceee----eee---e-cCCeeE
Q 037407 69 FNIIQNQLG---KLTY----DLE---W-DNGTSY 91 (216)
Q Consensus 69 ~niiq~Ql~---~~ly----D~E---w-~NgTsf 91 (216)
.+.|+.+|| +..| |++ | .|||+|
T Consensus 80 ~~~l~~~LgI~~~RiyI~f~d~~~~~~G~nG~TF 113 (113)
T d1hfoa_ 80 FDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113 (113)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHcCCCcceEEEEEEECCHHHeeeCCCcC
Confidence 566788887 3344 443 6 788876
No 6
>d2f2ha3 b.71.1.4 (A:586-665) Putative glucosidase YicI, domain 3 {Escherichia coli [TaxId: 562]}
Probab=12.53 E-value=51 Score=21.56 Aligned_cols=19 Identities=11% Similarity=0.417 Sum_probs=15.0
Q ss_pred eeeeeCCCCcchhhhhhhh
Q 037407 58 DLWYDWPNGRNFNIIQNQL 76 (216)
Q Consensus 58 dlyYDwp~gRn~niiq~Ql 76 (216)
-+||++|+-.+.-.+..|.
T Consensus 5 Pl~~~~p~d~~~~~~~~Qf 23 (80)
T d2f2ha3 5 AMMMEFPDDPACDYLDRQY 23 (80)
T ss_dssp CHHHHSTTCGGGTTCCSCE
T ss_pred CccccCCCChhHhCCCcEE
Confidence 4789999887766677787
No 7
>d1wzaa1 b.71.1.1 (A:437-515) Bacterial alpha-Amylase {Halothermothrix orenii [TaxId: 31909]}
Probab=12.01 E-value=93 Score=20.99 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=27.6
Q ss_pred ecCcEEEEEeeccCCceEEeeeCCccceEEEEecCC----cCCCC---CCcccccc
Q 037407 137 KVDFIWYYEDVVTKRPVHWAFYTGYTADVITFEVGA----VLEDP---KWQAPVYC 185 (216)
Q Consensus 137 K~dfi~Yyedv~t~rPVrw~F~~G~~~hvmtFevGa----vleD~---~wqaP~YC 185 (216)
|-|.+.|-.-|. |||+-..-+|- --+-|.-|. +.||+ .+.+|+|-
T Consensus 21 krdlyvyhnlvn--rpvkikvasgn--wtllfnsgdkeitpvednnklmytipayt 72 (79)
T d1wzaa1 21 KRDLYVYHNLVN--RPVKIKVASGN--WTLLFNSGDKEITPVEDNNKLMYTIPAYT 72 (79)
T ss_dssp SCEEEEEEECSS--SCEEEEEESSC--EEEEEESSSSCCCCEECSSEEEEEECTTC
T ss_pred cccEEEEehhcC--CcEEEEEecCc--EEEEEccCCceecccccCCEEEEEecceE
Confidence 445556655555 99997665553 234577776 34555 46777774
No 8
>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}
Probab=10.73 E-value=32 Score=23.59 Aligned_cols=16 Identities=13% Similarity=0.441 Sum_probs=13.7
Q ss_pred CccCCCCCccccceec
Q 037407 107 PVGILRPSWLDGAEYL 122 (216)
Q Consensus 107 ~vGiL~PdWL~gA~Yl 122 (216)
...++|.||-.|++|-
T Consensus 79 ~~nViP~~W~~G~tY~ 94 (95)
T d1n10a1 79 AEDVIPEGWKADTSYE 94 (95)
T ss_dssp EEEEECSSCCSSEEEE
T ss_pred ECceECCCCCCCCEEe
Confidence 4579999999999993
No 9
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces aureofaciens [TaxId: 1894]}
Probab=10.25 E-value=81 Score=21.43 Aligned_cols=17 Identities=47% Similarity=0.774 Sum_probs=13.0
Q ss_pred EEEEeeccCCceEEeeeCC
Q 037407 142 WYYEDVVTKRPVHWAFYTG 160 (216)
Q Consensus 142 ~Yyedv~t~rPVrw~F~~G 160 (216)
-||++.+++.|| .|.+|
T Consensus 15 i~y~~~G~G~~i--vllHG 31 (277)
T d1brta_ 15 LYYEDHGTGQPV--VLIHG 31 (277)
T ss_dssp EEEEEECSSSEE--EEECC
T ss_pred EEEEEEccCCeE--EEECC
Confidence 489999999997 45554
No 10
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=10.24 E-value=50 Score=22.67 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=15.2
Q ss_pred hhhhhhhhcC---eee----eee---e-cCCeeE
Q 037407 69 FNIIQNQLGK---LTY----DLE---W-DNGTSY 91 (216)
Q Consensus 69 ~niiq~Ql~~---~ly----D~E---w-~NgTsf 91 (216)
.++|+.+||. ..| |++ | .|||+|
T Consensus 81 ~~~l~~~LgI~~~Riyi~f~d~~~~~~G~nG~TF 114 (115)
T d1uiza_ 81 CDILTKQLNIPANRVYINYYDLNAANVGWNGSTF 114 (115)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHcCCCcceEEEEEEECCHHHeeECcEEC
Confidence 5677888973 344 443 6 788876
Done!