Query 037409
Match_columns 603
No_of_seqs 791 out of 3352
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 11:55:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.9E-72 1.3E-76 592.4 56.5 519 58-602 133-652 (857)
2 PLN03218 maturation of RBCL 1; 100.0 1.7E-68 3.6E-73 553.5 65.9 507 59-575 383-915 (1060)
3 PLN03218 maturation of RBCL 1; 100.0 4.6E-68 1E-72 550.3 68.1 527 64-602 355-907 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 3.1E-67 6.8E-72 556.4 56.8 521 58-601 164-717 (857)
5 PLN03081 pentatricopeptide (PP 100.0 6.2E-64 1.3E-68 518.6 54.5 474 79-571 85-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 7.6E-61 1.6E-65 495.6 52.6 470 113-602 84-555 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-37 4.2E-42 338.4 70.2 523 59-602 376-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-36 8E-41 328.3 70.5 524 58-602 341-864 (899)
9 PRK11447 cellulose synthase su 100.0 4.5E-29 9.7E-34 271.6 67.2 537 51-602 33-738 (1157)
10 PRK09782 bacteriophage N4 rece 100.0 2.3E-26 4.9E-31 238.7 63.6 524 48-602 46-704 (987)
11 PRK11447 cellulose synthase su 100.0 2.4E-26 5.2E-31 250.3 65.7 503 84-602 31-698 (1157)
12 KOG2002 TPR-containing nuclear 100.0 5.6E-25 1.2E-29 213.2 50.4 545 43-601 161-742 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 4E-23 8.7E-28 214.7 62.1 521 50-601 82-737 (987)
14 KOG4626 O-linked N-acetylgluco 100.0 1E-24 2.3E-29 200.9 38.7 384 186-586 116-501 (966)
15 KOG4626 O-linked N-acetylgluco 100.0 1E-24 2.2E-29 201.0 36.7 437 58-513 60-499 (966)
16 KOG2002 TPR-containing nuclear 100.0 8.9E-23 1.9E-27 198.1 49.9 511 59-585 212-760 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 5.3E-22 1.1E-26 203.3 50.9 256 308-568 308-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 1.1E-20 2.3E-25 193.7 53.1 432 83-534 129-572 (615)
19 PRK11788 tetratricopeptide rep 99.9 5.9E-22 1.3E-26 193.2 34.8 305 50-364 39-353 (389)
20 PRK10049 pgaA outer membrane p 99.9 7.7E-20 1.7E-24 190.7 51.8 415 113-571 12-459 (765)
21 PRK14574 hmsH outer membrane p 99.9 2.4E-19 5.1E-24 182.9 53.9 465 48-547 36-525 (822)
22 PRK10049 pgaA outer membrane p 99.9 3.2E-20 6.9E-25 193.5 48.1 421 82-549 16-470 (765)
23 PRK15174 Vi polysaccharide exp 99.9 3.2E-20 7E-25 189.2 46.1 361 161-533 15-381 (656)
24 PRK15174 Vi polysaccharide exp 99.9 1.7E-20 3.7E-25 191.3 43.3 368 194-571 13-384 (656)
25 PRK11788 tetratricopeptide rep 99.9 3.8E-21 8.3E-26 187.5 34.7 301 86-395 40-349 (389)
26 PRK14574 hmsH outer membrane p 99.9 1.3E-18 2.7E-23 177.7 53.4 458 81-571 34-516 (822)
27 KOG2076 RNA polymerase III tra 99.9 1.4E-17 3E-22 161.4 54.0 545 51-602 144-847 (895)
28 KOG0495 HAT repeat protein [RN 99.9 1.5E-16 3.4E-21 148.4 54.1 508 65-600 365-876 (913)
29 KOG2003 TPR repeat-containing 99.9 1E-18 2.2E-23 155.9 35.9 490 52-554 155-709 (840)
30 KOG1915 Cell cycle control pro 99.9 8.7E-16 1.9E-20 138.1 50.5 470 80-567 72-584 (677)
31 KOG0495 HAT repeat protein [RN 99.9 2.1E-15 4.6E-20 141.0 53.5 496 60-581 390-891 (913)
32 KOG2076 RNA polymerase III tra 99.8 1.1E-15 2.4E-20 148.5 48.3 370 82-459 140-551 (895)
33 KOG1915 Cell cycle control pro 99.8 7.1E-15 1.5E-19 132.4 47.6 480 103-601 61-582 (677)
34 KOG4422 Uncharacterized conser 99.8 7.2E-15 1.6E-19 130.7 42.7 341 81-445 116-479 (625)
35 KOG4422 Uncharacterized conser 99.8 2.2E-14 4.7E-19 127.6 43.3 430 116-571 116-593 (625)
36 KOG2003 TPR repeat-containing 99.8 2.9E-15 6.3E-20 134.1 35.1 463 119-598 204-716 (840)
37 KOG1155 Anaphase-promoting com 99.8 2.3E-14 4.9E-19 128.9 39.8 364 222-602 162-534 (559)
38 KOG0547 Translocase of outer m 99.8 8.3E-15 1.8E-19 132.5 31.7 215 377-600 339-562 (606)
39 PF13429 TPR_15: Tetratricopep 99.7 8E-18 1.7E-22 155.0 12.2 261 334-602 13-275 (280)
40 KOG1155 Anaphase-promoting com 99.7 4.3E-13 9.4E-18 120.8 40.0 367 182-568 160-536 (559)
41 TIGR00540 hemY_coli hemY prote 99.7 1.6E-14 3.4E-19 140.0 33.7 288 307-601 97-396 (409)
42 PRK10747 putative protoheme IX 99.7 3.7E-14 8.1E-19 136.6 35.6 293 50-357 88-389 (398)
43 TIGR00540 hemY_coli hemY prote 99.7 3.3E-14 7.2E-19 137.8 34.8 298 51-355 89-396 (409)
44 KOG0547 Translocase of outer m 99.7 1.5E-13 3.2E-18 124.6 35.8 224 304-533 336-566 (606)
45 PRK10747 putative protoheme IX 99.7 4E-14 8.7E-19 136.4 34.0 283 272-567 97-389 (398)
46 KOG1173 Anaphase-promoting com 99.7 2.9E-13 6.3E-18 125.1 36.7 471 80-569 15-519 (611)
47 KOG2047 mRNA splicing factor [ 99.7 2.2E-11 4.8E-16 114.4 49.0 503 81-598 102-681 (835)
48 KOG1126 DNA-binding cell divis 99.7 7.7E-15 1.7E-19 138.3 24.1 288 274-571 334-623 (638)
49 PF13429 TPR_15: Tetratricopep 99.7 1.6E-16 3.5E-21 146.3 12.9 256 56-321 18-275 (280)
50 KOG3785 Uncharacterized conser 99.7 3.2E-12 7E-17 111.2 37.2 456 47-542 29-497 (557)
51 COG2956 Predicted N-acetylgluc 99.7 3.6E-13 7.9E-18 115.7 30.2 268 61-338 50-324 (389)
52 KOG1173 Anaphase-promoting com 99.7 5.1E-12 1.1E-16 117.1 39.6 463 59-547 29-530 (611)
53 KOG1126 DNA-binding cell divis 99.7 2E-14 4.3E-19 135.6 24.5 278 309-598 334-614 (638)
54 KOG2047 mRNA splicing factor [ 99.7 4.2E-10 9.1E-15 106.1 52.2 522 58-598 114-717 (835)
55 COG2956 Predicted N-acetylgluc 99.7 9.9E-13 2.1E-17 113.1 29.1 302 83-392 38-346 (389)
56 COG3071 HemY Uncharacterized e 99.6 2.2E-12 4.8E-17 114.6 32.2 286 271-566 96-388 (400)
57 KOG4162 Predicted calmodulin-b 99.6 4.2E-11 9E-16 115.3 42.9 477 93-601 239-780 (799)
58 COG3071 HemY Uncharacterized e 99.6 8.5E-12 1.9E-16 110.9 34.4 286 94-392 97-389 (400)
59 KOG1156 N-terminal acetyltrans 99.6 2E-10 4.3E-15 108.5 44.6 424 59-499 20-469 (700)
60 KOG3785 Uncharacterized conser 99.6 3.1E-11 6.7E-16 105.3 35.9 449 88-571 29-493 (557)
61 KOG1156 N-terminal acetyltrans 99.6 5.6E-10 1.2E-14 105.5 45.4 428 52-497 47-510 (700)
62 KOG4162 Predicted calmodulin-b 99.6 4.8E-11 1E-15 114.8 39.0 412 149-571 321-786 (799)
63 PRK12370 invasion protein regu 99.6 2.1E-12 4.6E-17 130.1 27.7 269 77-358 252-535 (553)
64 KOG1129 TPR repeat-containing 99.6 1.1E-12 2.3E-17 112.9 20.8 225 368-599 227-453 (478)
65 KOG4318 Bicoid mRNA stability 99.5 6.5E-11 1.4E-15 115.5 33.5 493 71-599 15-589 (1088)
66 KOG0548 Molecular co-chaperone 99.5 1E-10 2.2E-15 108.1 32.4 443 55-550 11-471 (539)
67 PF12569 NARP1: NMDA receptor- 99.5 1.4E-09 3E-14 105.8 41.8 53 546-600 463-516 (517)
68 PRK12370 invasion protein regu 99.5 2.1E-11 4.5E-16 123.1 30.5 251 130-393 275-535 (553)
69 KOG1129 TPR repeat-containing 99.5 2.5E-12 5.4E-17 110.7 19.7 234 332-571 226-461 (478)
70 TIGR02521 type_IV_pilW type IV 99.5 1.7E-11 3.7E-16 110.5 26.3 198 399-601 31-229 (234)
71 KOG1174 Anaphase-promoting com 99.5 2.4E-09 5.2E-14 95.7 37.8 299 237-544 209-510 (564)
72 KOG1174 Anaphase-promoting com 99.5 6.4E-09 1.4E-13 93.0 40.5 401 150-571 96-503 (564)
73 KOG2376 Signal recognition par 99.5 8E-09 1.7E-13 96.8 42.7 451 86-565 17-517 (652)
74 TIGR02521 type_IV_pilW type IV 99.5 3.6E-11 7.8E-16 108.4 25.9 199 81-286 31-230 (234)
75 KOG2376 Signal recognition par 99.5 1.1E-08 2.4E-13 95.9 41.6 452 119-601 15-517 (652)
76 KOG1127 TPR repeat-containing 99.4 5.9E-09 1.3E-13 103.4 38.1 186 60-252 472-658 (1238)
77 KOG0548 Molecular co-chaperone 99.4 1.2E-09 2.7E-14 101.2 31.2 239 332-587 227-472 (539)
78 PRK11189 lipoprotein NlpI; Pro 99.4 3.8E-10 8.2E-15 104.1 28.3 218 60-289 40-266 (296)
79 KOG4318 Bicoid mRNA stability 99.4 2.5E-09 5.5E-14 104.7 33.5 465 102-601 11-554 (1088)
80 PF12569 NARP1: NMDA receptor- 99.4 3.9E-08 8.5E-13 95.9 41.3 46 518-564 471-516 (517)
81 KOG1840 Kinesin light chain [C 99.4 1.6E-10 3.4E-15 110.8 24.4 166 436-601 285-476 (508)
82 COG3063 PilF Tfp pilus assembl 99.4 1.1E-09 2.3E-14 90.4 23.8 198 368-569 39-237 (250)
83 COG3063 PilF Tfp pilus assembl 99.4 7.9E-10 1.7E-14 91.2 22.7 195 401-600 37-232 (250)
84 KOG3617 WD40 and TPR repeat-co 99.3 7.1E-07 1.5E-11 87.3 43.7 230 59-321 741-994 (1416)
85 PRK11189 lipoprotein NlpI; Pro 99.3 2.6E-09 5.6E-14 98.6 26.8 237 344-590 41-286 (296)
86 KOG1127 TPR repeat-containing 99.3 4.1E-08 8.8E-13 97.7 35.9 478 96-602 473-994 (1238)
87 KOG1840 Kinesin light chain [C 99.3 1E-09 2.3E-14 105.3 24.6 241 117-357 200-478 (508)
88 KOG0985 Vesicle coat protein c 99.3 1.1E-06 2.5E-11 87.8 45.1 38 306-344 850-887 (1666)
89 cd05804 StaR_like StaR_like; a 99.3 1.7E-08 3.6E-13 97.3 33.0 195 51-251 11-213 (355)
90 KOG3616 Selective LIM binding 99.3 2.2E-07 4.8E-12 89.5 37.1 131 59-211 719-849 (1636)
91 KOG4340 Uncharacterized conser 99.3 2.7E-08 5.8E-13 85.2 26.7 290 85-389 14-335 (459)
92 cd05804 StaR_like StaR_like; a 99.2 7.1E-08 1.5E-12 92.9 33.7 197 260-461 7-213 (355)
93 KOG0985 Vesicle coat protein c 99.2 1.3E-06 2.8E-11 87.4 41.2 187 374-599 1058-1244(1666)
94 PRK04841 transcriptional regul 99.2 2.2E-06 4.8E-11 93.8 47.7 58 510-567 697-759 (903)
95 KOG4340 Uncharacterized conser 99.2 3.9E-08 8.4E-13 84.3 26.0 351 119-496 13-373 (459)
96 KOG3616 Selective LIM binding 99.2 5.7E-07 1.2E-11 86.8 36.4 429 59-561 457-930 (1636)
97 KOG0624 dsRNA-activated protei 99.2 1.6E-06 3.5E-11 76.2 35.6 86 271-358 167-252 (504)
98 KOG2053 Mitochondrial inherita 99.2 5.7E-06 1.2E-10 82.2 43.1 495 59-595 22-561 (932)
99 KOG1125 TPR repeat-containing 99.2 1.9E-08 4E-13 94.4 24.7 228 49-287 288-526 (579)
100 PF13041 PPR_2: PPR repeat fam 99.2 1.1E-10 2.4E-15 74.6 6.5 47 258-304 2-48 (50)
101 KOG0624 dsRNA-activated protei 99.2 2.7E-07 5.9E-12 80.8 29.0 199 80-288 37-252 (504)
102 PF13041 PPR_2: PPR repeat fam 99.2 9.7E-11 2.1E-15 74.9 6.2 50 222-271 1-50 (50)
103 KOG3617 WD40 and TPR repeat-co 99.2 7.4E-06 1.6E-10 80.5 41.2 53 519-571 1306-1362(1416)
104 PF04733 Coatomer_E: Coatomer 99.1 4.6E-09 1E-13 95.2 18.4 250 305-570 12-267 (290)
105 KOG1914 mRNA cleavage and poly 99.1 6.5E-06 1.4E-10 77.1 41.5 433 71-533 11-501 (656)
106 PLN02789 farnesyltranstransfer 99.1 1.4E-07 3E-12 86.9 26.2 204 377-587 50-267 (320)
107 KOG1125 TPR repeat-containing 99.1 1.7E-08 3.7E-13 94.6 20.1 252 339-597 295-564 (579)
108 PRK04841 transcriptional regul 99.1 1.1E-06 2.5E-11 96.0 37.7 336 196-534 384-761 (903)
109 PF04733 Coatomer_E: Coatomer 99.1 9.9E-09 2.1E-13 93.1 17.4 248 337-601 9-262 (290)
110 KOG1128 Uncharacterized conser 99.1 1E-07 2.3E-12 91.9 24.5 239 326-585 395-633 (777)
111 KOG1128 Uncharacterized conser 99.0 7.2E-08 1.6E-12 93.0 22.3 217 364-602 398-614 (777)
112 TIGR03302 OM_YfiO outer membra 99.0 5.3E-08 1.1E-12 87.4 20.1 184 398-601 32-229 (235)
113 PLN02789 farnesyltranstransfer 99.0 3.6E-07 7.8E-12 84.1 25.4 212 50-271 42-267 (320)
114 COG5010 TadD Flp pilus assembl 99.0 2.3E-07 4.9E-12 78.8 20.0 160 403-566 70-229 (257)
115 PRK10370 formate-dependent nit 99.0 1.2E-07 2.6E-12 81.1 19.0 151 406-571 23-176 (198)
116 KOG1070 rRNA processing protei 98.9 1.1E-06 2.4E-11 91.0 26.7 216 67-291 1445-1666(1710)
117 PRK15359 type III secretion sy 98.9 1.3E-07 2.9E-12 76.4 16.6 110 471-584 26-135 (144)
118 KOG1914 mRNA cleavage and poly 98.9 5.9E-05 1.3E-09 70.9 44.4 433 108-568 13-501 (656)
119 PRK15179 Vi polysaccharide bio 98.9 4.3E-07 9.2E-12 92.4 23.6 136 431-569 83-218 (694)
120 PRK10370 formate-dependent nit 98.9 5.4E-07 1.2E-11 77.2 20.6 155 371-541 23-180 (198)
121 KOG2053 Mitochondrial inherita 98.9 0.00012 2.5E-09 73.3 50.9 205 44-255 41-257 (932)
122 COG5010 TadD Flp pilus assembl 98.9 1E-06 2.3E-11 74.9 20.6 157 368-528 70-226 (257)
123 TIGR03302 OM_YfiO outer membra 98.9 5.6E-07 1.2E-11 80.8 20.6 61 50-110 37-99 (235)
124 KOG1070 rRNA processing protei 98.9 2.9E-06 6.4E-11 88.0 26.9 232 150-388 1457-1695(1710)
125 PRK15359 type III secretion sy 98.8 4.5E-07 9.8E-12 73.4 16.1 123 420-549 14-136 (144)
126 KOG3060 Uncharacterized conser 98.8 4.4E-06 9.6E-11 70.4 21.6 190 377-570 25-222 (289)
127 KOG3081 Vesicle coat complex C 98.8 1.1E-05 2.4E-10 68.6 23.1 247 57-323 19-271 (299)
128 PRK15179 Vi polysaccharide bio 98.7 6.4E-06 1.4E-10 84.0 25.3 217 327-566 26-243 (694)
129 KOG3081 Vesicle coat complex C 98.7 7.2E-06 1.6E-10 69.8 21.1 254 301-571 15-274 (299)
130 TIGR02552 LcrH_SycD type III s 98.7 9.9E-07 2.1E-11 71.2 15.7 113 456-571 5-117 (135)
131 TIGR02552 LcrH_SycD type III s 98.7 4.1E-07 8.9E-12 73.5 12.9 108 491-602 5-112 (135)
132 PRK14720 transcript cleavage f 98.7 3.5E-05 7.5E-10 79.5 28.1 237 150-445 30-268 (906)
133 PRK14720 transcript cleavage f 98.6 3E-05 6.5E-10 80.0 26.5 222 78-340 28-268 (906)
134 COG4783 Putative Zn-dependent 98.6 6.6E-06 1.4E-10 76.4 19.1 166 396-567 271-436 (484)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 2.4E-06 5.2E-11 80.2 16.1 123 473-602 173-295 (395)
136 PF09976 TPR_21: Tetratricopep 98.5 7.5E-06 1.6E-10 66.7 16.0 128 471-602 14-145 (145)
137 KOG3060 Uncharacterized conser 98.5 0.00013 2.9E-09 61.8 22.9 201 341-546 24-232 (289)
138 COG4783 Putative Zn-dependent 98.5 4.8E-05 1E-09 70.9 22.0 184 362-569 272-455 (484)
139 PF12854 PPR_1: PPR repeat 98.5 1.7E-07 3.6E-12 53.5 3.8 32 254-285 2-33 (34)
140 PF12854 PPR_1: PPR repeat 98.5 3.1E-07 6.7E-12 52.4 4.1 32 146-177 2-33 (34)
141 PF09976 TPR_21: Tetratricopep 98.4 2.1E-05 4.5E-10 64.0 15.5 126 436-565 14-144 (145)
142 PRK15363 pathogenicity island 98.4 2E-05 4.4E-10 62.5 14.4 100 468-569 34-133 (157)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 2.2E-05 4.8E-10 73.9 16.1 123 403-531 173-295 (395)
144 PRK15363 pathogenicity island 98.3 3.6E-05 7.8E-10 61.1 14.6 96 436-533 37-132 (157)
145 KOG0550 Molecular chaperone (D 98.3 0.00072 1.6E-08 61.7 23.1 287 194-533 57-350 (486)
146 PF12895 Apc3: Anaphase-promot 98.3 1.5E-06 3.3E-11 63.0 5.3 81 517-600 2-83 (84)
147 cd00189 TPR Tetratricopeptide 98.2 1.9E-05 4.1E-10 59.2 10.7 94 472-567 3-96 (100)
148 PLN03088 SGT1, suppressor of 98.2 5.4E-05 1.2E-09 71.8 15.5 92 441-534 9-100 (356)
149 COG3898 Uncharacterized membra 98.2 0.0043 9.2E-08 56.5 32.0 285 53-358 91-392 (531)
150 KOG0550 Molecular chaperone (D 98.2 0.0003 6.4E-09 64.1 18.9 93 477-570 257-352 (486)
151 COG3898 Uncharacterized membra 98.2 0.0045 9.7E-08 56.3 27.0 267 46-327 120-396 (531)
152 TIGR02795 tol_pal_ybgF tol-pal 98.2 3.9E-05 8.5E-10 60.3 12.2 102 470-571 3-108 (119)
153 cd00189 TPR Tetratricopeptide 98.2 3.5E-05 7.7E-10 57.7 11.6 92 507-601 3-94 (100)
154 PF12895 Apc3: Anaphase-promot 98.2 3.5E-06 7.5E-11 61.1 5.3 81 482-564 2-83 (84)
155 TIGR02795 tol_pal_ybgF tol-pal 98.1 0.00011 2.4E-09 57.6 13.8 105 435-540 3-111 (119)
156 KOG2041 WD40 repeat protein [G 98.1 0.011 2.3E-07 58.0 30.0 62 469-530 1021-1083(1189)
157 COG4235 Cytochrome c biogenesi 98.1 0.00018 3.9E-09 63.4 15.4 116 62-180 138-256 (287)
158 COG4235 Cytochrome c biogenesi 98.1 0.00012 2.5E-09 64.5 14.2 120 449-571 137-259 (287)
159 PRK10866 outer membrane biogen 98.1 0.0012 2.6E-08 58.7 19.9 183 49-251 35-239 (243)
160 PRK02603 photosystem I assembl 98.1 0.00031 6.8E-09 59.2 15.5 113 471-589 37-165 (172)
161 PLN03088 SGT1, suppressor of 98.1 0.0002 4.2E-09 68.0 15.8 92 407-500 10-101 (356)
162 KOG0553 TPR repeat-containing 98.0 5.8E-05 1.3E-09 65.9 10.9 96 90-189 90-185 (304)
163 COG4700 Uncharacterized protei 98.0 0.0014 3E-08 52.9 17.6 133 80-214 88-221 (251)
164 PF14938 SNAP: Soluble NSF att 98.0 0.001 2.2E-08 61.2 19.8 170 88-288 42-225 (282)
165 CHL00033 ycf3 photosystem I as 98.0 0.00011 2.4E-09 61.7 12.5 96 469-565 35-139 (168)
166 PF07079 DUF1347: Protein of u 98.0 0.013 2.8E-07 54.6 43.2 51 549-602 472-522 (549)
167 KOG0553 TPR repeat-containing 98.0 0.00014 3E-09 63.6 12.2 98 441-542 88-185 (304)
168 COG4700 Uncharacterized protei 98.0 0.0045 9.7E-08 50.1 19.4 134 431-566 86-220 (251)
169 PRK10153 DNA-binding transcrip 98.0 0.00074 1.6E-08 67.0 18.9 137 432-571 335-485 (517)
170 PF13414 TPR_11: TPR repeat; P 97.9 5.9E-05 1.3E-09 52.2 7.0 63 504-567 3-66 (69)
171 PF12688 TPR_5: Tetratrico pep 97.9 0.00047 1E-08 53.0 12.1 94 473-567 5-103 (120)
172 TIGR00756 PPR pentatricopeptid 97.9 3.2E-05 6.8E-10 44.9 4.5 33 261-293 2-34 (35)
173 PF13414 TPR_11: TPR repeat; P 97.9 6.9E-05 1.5E-09 51.8 6.8 63 538-602 2-65 (69)
174 PRK02603 photosystem I assembl 97.9 0.00083 1.8E-08 56.6 14.7 94 80-174 34-129 (172)
175 PF13432 TPR_16: Tetratricopep 97.9 8.6E-05 1.9E-09 50.6 7.1 58 511-569 4-61 (65)
176 TIGR00756 PPR pentatricopeptid 97.9 3.1E-05 6.7E-10 44.9 4.2 33 226-258 2-34 (35)
177 CHL00033 ycf3 photosystem I as 97.8 0.00038 8.3E-09 58.4 12.5 86 60-145 13-101 (168)
178 PRK10153 DNA-binding transcrip 97.8 0.0012 2.6E-08 65.6 17.6 62 187-253 421-482 (517)
179 COG5107 RNA14 Pre-mRNA 3'-end 97.8 0.026 5.7E-07 52.6 38.3 435 73-533 35-531 (660)
180 PF13432 TPR_16: Tetratricopep 97.8 6.6E-05 1.4E-09 51.2 6.3 57 544-602 2-58 (65)
181 PF05843 Suf: Suppressor of fo 97.8 0.00061 1.3E-08 62.3 14.5 131 152-288 2-136 (280)
182 PRK10866 outer membrane biogen 97.8 0.015 3.4E-07 51.7 22.4 56 265-320 181-238 (243)
183 PF14559 TPR_19: Tetratricopep 97.8 7.4E-05 1.6E-09 51.5 6.3 54 515-569 2-55 (68)
184 PF13812 PPR_3: Pentatricopept 97.8 4.1E-05 8.8E-10 44.0 4.1 33 152-184 2-34 (34)
185 PF05843 Suf: Suppressor of fo 97.8 0.00062 1.4E-08 62.2 13.8 131 82-215 2-136 (280)
186 PF13812 PPR_3: Pentatricopept 97.8 4.8E-05 1E-09 43.7 4.3 30 261-290 3-32 (34)
187 PF12688 TPR_5: Tetratrico pep 97.8 0.0025 5.4E-08 49.0 14.4 93 440-532 7-103 (120)
188 PF10037 MRP-S27: Mitochondria 97.8 0.00063 1.4E-08 64.6 13.4 122 290-411 62-185 (429)
189 PF14938 SNAP: Soluble NSF att 97.7 0.0051 1.1E-07 56.6 19.1 19 373-391 44-62 (282)
190 PF10037 MRP-S27: Mitochondria 97.7 0.00068 1.5E-08 64.4 13.1 116 185-301 65-180 (429)
191 KOG2041 WD40 repeat protein [G 97.7 0.063 1.4E-06 53.0 28.7 205 183-425 689-904 (1189)
192 PF14559 TPR_19: Tetratricopep 97.7 0.0001 2.2E-09 50.8 5.6 51 550-602 2-52 (68)
193 KOG1130 Predicted G-alpha GTPa 97.7 0.00092 2E-08 60.9 12.4 132 436-567 197-343 (639)
194 PRK11906 transcriptional regul 97.7 0.004 8.8E-08 58.8 17.0 82 450-533 320-401 (458)
195 PRK15331 chaperone protein Sic 97.7 0.0015 3.2E-08 52.4 12.1 89 477-567 45-133 (165)
196 PRK10803 tol-pal system protei 97.7 0.00093 2E-08 59.8 12.4 102 470-571 144-249 (263)
197 KOG1130 Predicted G-alpha GTPa 97.6 0.00053 1.2E-08 62.4 10.1 131 331-461 197-342 (639)
198 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.064 1.4E-06 50.1 37.2 446 102-570 30-533 (660)
199 KOG2796 Uncharacterized conser 97.5 0.046 9.9E-07 47.2 20.4 131 402-533 180-315 (366)
200 PF13371 TPR_9: Tetratricopept 97.5 0.00044 9.5E-09 48.4 6.8 59 512-571 3-61 (73)
201 PRK10803 tol-pal system protei 97.5 0.003 6.6E-08 56.6 13.5 98 436-533 145-246 (263)
202 KOG0543 FKBP-type peptidyl-pro 97.5 0.0025 5.4E-08 58.6 12.8 93 506-601 259-352 (397)
203 PF08579 RPM2: Mitochondrial r 97.5 0.0021 4.6E-08 47.4 9.6 76 230-305 31-115 (120)
204 PF01535 PPR: PPR repeat; Int 97.5 0.0002 4.3E-09 40.0 3.7 26 262-287 3-28 (31)
205 PF13525 YfiO: Outer membrane 97.4 0.019 4.2E-07 49.7 17.5 22 88-109 12-33 (203)
206 PRK15331 chaperone protein Sic 97.4 0.012 2.5E-07 47.4 14.4 88 443-532 46-133 (165)
207 COG4785 NlpI Lipoprotein NlpI, 97.4 0.014 3E-07 48.7 15.0 194 50-253 69-266 (297)
208 PF01535 PPR: PPR repeat; Int 97.4 0.00022 4.8E-09 39.8 3.5 29 226-254 2-30 (31)
209 PF08579 RPM2: Mitochondrial r 97.4 0.004 8.6E-08 46.0 10.4 78 263-340 29-115 (120)
210 PF07079 DUF1347: Protein of u 97.4 0.12 2.7E-06 48.5 46.0 145 418-566 361-522 (549)
211 COG1729 Uncharacterized protei 97.4 0.0026 5.6E-08 55.5 11.1 100 471-571 144-247 (262)
212 PF13371 TPR_9: Tetratricopept 97.4 0.00053 1.1E-08 48.0 5.9 55 546-602 2-56 (73)
213 PF13525 YfiO: Outer membrane 97.4 0.028 6.1E-07 48.7 17.7 58 122-179 11-70 (203)
214 PF13424 TPR_12: Tetratricopep 97.4 0.0006 1.3E-08 48.5 5.9 61 506-566 7-73 (78)
215 KOG1538 Uncharacterized conser 97.2 0.066 1.4E-06 52.4 19.3 83 469-564 747-829 (1081)
216 KOG4555 TPR repeat-containing 97.2 0.012 2.7E-07 44.5 11.1 94 52-146 49-145 (175)
217 PF03704 BTAD: Bacterial trans 97.2 0.018 3.9E-07 47.0 13.5 71 506-578 64-139 (146)
218 PF10300 DUF3808: Protein of u 97.2 0.025 5.5E-07 55.9 16.8 117 483-602 247-374 (468)
219 PF04840 Vps16_C: Vps16, C-ter 97.2 0.21 4.6E-06 46.4 30.6 105 367-491 180-284 (319)
220 KOG2796 Uncharacterized conser 97.1 0.15 3.2E-06 44.2 23.4 130 368-498 181-315 (366)
221 PF03704 BTAD: Bacterial trans 97.1 0.028 6.1E-07 45.8 14.2 73 470-543 63-140 (146)
222 KOG2114 Vacuolar assembly/sort 97.1 0.41 8.9E-06 48.8 24.9 178 84-285 337-516 (933)
223 KOG2280 Vacuolar assembly/sort 97.1 0.38 8.2E-06 48.4 27.1 338 180-561 426-792 (829)
224 COG3118 Thioredoxin domain-con 97.1 0.12 2.6E-06 45.9 18.1 154 443-599 143-296 (304)
225 COG3118 Thioredoxin domain-con 97.1 0.1 2.2E-06 46.3 17.7 149 88-241 141-289 (304)
226 KOG2280 Vacuolar assembly/sort 97.1 0.38 8.3E-06 48.3 31.4 368 194-598 397-793 (829)
227 COG4105 ComL DNA uptake lipopr 97.1 0.17 3.7E-06 44.1 19.7 81 82-162 35-117 (254)
228 PF04840 Vps16_C: Vps16, C-ter 97.1 0.27 5.8E-06 45.7 28.1 104 263-386 181-284 (319)
229 PF13512 TPR_18: Tetratricopep 97.0 0.031 6.7E-07 43.9 12.7 54 480-533 21-76 (142)
230 PF06239 ECSIT: Evolutionarily 97.0 0.021 4.6E-07 48.1 12.0 34 310-343 119-152 (228)
231 PF13281 DUF4071: Domain of un 97.0 0.32 7E-06 45.7 21.9 76 369-444 146-227 (374)
232 PF13424 TPR_12: Tetratricopep 97.0 0.0022 4.8E-08 45.5 5.6 60 541-600 7-71 (78)
233 PF06239 ECSIT: Evolutionarily 97.0 0.027 5.9E-07 47.4 12.5 98 223-320 46-165 (228)
234 KOG0543 FKBP-type peptidyl-pro 96.9 0.02 4.4E-07 52.9 12.7 98 469-568 257-355 (397)
235 KOG1258 mRNA processing protei 96.9 0.48 1E-05 46.5 34.4 133 80-215 44-180 (577)
236 PRK11906 transcriptional regul 96.9 0.083 1.8E-06 50.3 16.6 158 50-213 259-434 (458)
237 PF13281 DUF4071: Domain of un 96.9 0.24 5.1E-06 46.5 19.4 164 120-288 145-334 (374)
238 PLN03098 LPA1 LOW PSII ACCUMUL 96.9 0.0054 1.2E-07 57.9 8.7 64 503-568 74-141 (453)
239 KOG1538 Uncharacterized conser 96.9 0.15 3.2E-06 50.1 18.0 89 434-533 747-846 (1081)
240 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.021 4.6E-07 54.0 12.2 65 80-145 74-141 (453)
241 COG0457 NrfG FOG: TPR repeat [ 96.8 0.34 7.4E-06 43.3 28.5 226 342-569 36-266 (291)
242 KOG1258 mRNA processing protei 96.7 0.68 1.5E-05 45.5 34.3 118 61-180 60-180 (577)
243 KOG1941 Acetylcholine receptor 96.7 0.043 9.4E-07 49.7 12.2 228 339-567 16-274 (518)
244 KOG4555 TPR repeat-containing 96.7 0.046 1E-06 41.5 10.4 91 478-569 52-145 (175)
245 KOG2610 Uncharacterized conser 96.6 0.062 1.3E-06 48.2 12.6 150 376-529 115-272 (491)
246 KOG2610 Uncharacterized conser 96.6 0.075 1.6E-06 47.7 13.0 153 126-284 113-272 (491)
247 PF10300 DUF3808: Protein of u 96.6 0.27 5.9E-06 48.8 18.5 118 447-566 246-374 (468)
248 PF13428 TPR_14: Tetratricopep 96.5 0.0074 1.6E-07 36.9 4.8 40 541-582 3-42 (44)
249 PF13512 TPR_18: Tetratricopep 96.5 0.096 2.1E-06 41.2 11.8 86 78-163 7-94 (142)
250 PF04184 ST7: ST7 protein; In 96.4 0.38 8.1E-06 46.2 17.1 61 473-533 263-324 (539)
251 KOG1941 Acetylcholine receptor 96.4 0.15 3.2E-06 46.5 13.7 229 304-532 16-274 (518)
252 COG1729 Uncharacterized protei 96.4 0.08 1.7E-06 46.5 11.8 97 436-533 144-244 (262)
253 COG2976 Uncharacterized protei 96.3 0.2 4.4E-06 41.4 12.7 91 477-569 97-189 (207)
254 KOG1585 Protein required for f 96.2 0.67 1.5E-05 39.9 17.0 208 83-317 33-250 (308)
255 PF09205 DUF1955: Domain of un 96.2 0.38 8.3E-06 36.9 14.4 68 503-571 85-152 (161)
256 COG4649 Uncharacterized protei 96.2 0.27 5.8E-06 39.7 12.7 131 49-179 61-195 (221)
257 COG0457 NrfG FOG: TPR repeat [ 96.2 0.88 1.9E-05 40.6 29.8 225 307-534 36-266 (291)
258 PF09205 DUF1955: Domain of un 96.1 0.42 9.2E-06 36.7 14.1 63 437-500 89-151 (161)
259 PF13428 TPR_14: Tetratricopep 96.1 0.023 5E-07 34.7 5.3 38 507-545 4-41 (44)
260 KOG0890 Protein kinase of the 96.1 4.2 9E-05 47.3 25.5 319 264-602 1388-1729(2382)
261 PF08631 SPO22: Meiosis protei 96.0 1.2 2.7E-05 40.8 25.8 161 436-599 86-270 (278)
262 PF13431 TPR_17: Tetratricopep 96.0 0.011 2.4E-07 33.5 3.2 32 69-101 2-33 (34)
263 KOG2114 Vacuolar assembly/sort 95.9 2.4 5.2E-05 43.6 26.9 73 509-590 710-786 (933)
264 PF13431 TPR_17: Tetratricopep 95.9 0.0087 1.9E-07 34.0 2.7 32 562-595 2-33 (34)
265 KOG4234 TPR repeat-containing 95.8 0.11 2.5E-06 42.9 9.3 96 475-571 101-200 (271)
266 PF04053 Coatomer_WDAD: Coatom 95.7 0.47 1E-05 46.4 15.1 158 195-389 270-427 (443)
267 PF04053 Coatomer_WDAD: Coatom 95.7 0.28 6E-06 48.0 13.4 97 162-282 329-425 (443)
268 PF12921 ATP13: Mitochondrial 95.6 0.27 5.7E-06 38.4 10.6 97 434-550 2-99 (126)
269 PF12921 ATP13: Mitochondrial 95.5 0.49 1.1E-05 37.0 11.8 97 398-514 1-98 (126)
270 COG4649 Uncharacterized protei 95.5 1.1 2.3E-05 36.5 15.3 124 91-214 68-195 (221)
271 PRK15180 Vi polysaccharide bio 95.4 2.6 5.7E-05 40.3 28.9 122 91-215 299-420 (831)
272 PF04184 ST7: ST7 protein; In 95.4 0.9 1.9E-05 43.8 14.9 144 412-570 181-326 (539)
273 KOG1920 IkappaB kinase complex 95.3 5.1 0.00011 43.2 28.9 104 443-566 948-1053(1265)
274 PF08631 SPO22: Meiosis protei 95.3 2.3 5.1E-05 39.0 25.7 18 339-356 256-273 (278)
275 PF09613 HrpB1_HrpK: Bacterial 95.2 1.3 2.7E-05 35.9 13.2 53 445-498 21-73 (160)
276 KOG1920 IkappaB kinase complex 95.2 5.8 0.00013 42.8 21.7 27 226-252 792-820 (1265)
277 PF13176 TPR_7: Tetratricopept 95.1 0.033 7.2E-07 32.1 3.3 24 578-601 2-25 (36)
278 PF09613 HrpB1_HrpK: Bacterial 95.1 1.4 3.1E-05 35.6 13.2 53 58-111 22-74 (160)
279 KOG4234 TPR repeat-containing 94.9 0.79 1.7E-05 38.2 11.5 93 441-534 102-198 (271)
280 COG4785 NlpI Lipoprotein NlpI, 94.8 2.2 4.7E-05 36.3 17.1 181 377-571 78-269 (297)
281 KOG2396 HAT (Half-A-TPR) repea 94.8 4.1 8.9E-05 39.4 39.3 96 470-567 461-558 (568)
282 smart00299 CLH Clathrin heavy 94.8 1.7 3.7E-05 34.9 15.7 84 299-390 12-95 (140)
283 COG3629 DnrI DNA-binding trans 94.8 0.39 8.5E-06 43.1 10.4 79 469-548 153-236 (280)
284 COG4105 ComL DNA uptake lipopr 94.6 2.9 6.2E-05 36.8 21.5 23 476-498 174-196 (254)
285 PF02259 FAT: FAT domain; Int 94.5 4.8 0.0001 38.6 22.7 65 433-497 145-212 (352)
286 COG3629 DnrI DNA-binding trans 94.0 0.88 1.9E-05 40.9 10.8 79 504-584 153-236 (280)
287 PF13176 TPR_7: Tetratricopept 93.9 0.15 3.3E-06 29.3 4.1 22 543-564 3-24 (36)
288 smart00299 CLH Clathrin heavy 93.9 2.8 6.1E-05 33.7 15.8 43 334-377 12-54 (140)
289 COG2976 Uncharacterized protei 93.5 3.9 8.5E-05 34.2 14.6 86 513-601 98-185 (207)
290 PF13170 DUF4003: Protein of u 93.5 6.2 0.00013 36.4 20.0 87 168-256 79-175 (297)
291 PF04097 Nic96: Nup93/Nic96; 93.5 11 0.00024 39.2 20.6 16 586-601 516-531 (613)
292 PF07719 TPR_2: Tetratricopept 93.4 0.25 5.4E-06 27.8 4.5 28 541-568 3-30 (34)
293 PF07719 TPR_2: Tetratricopept 93.4 0.15 3.3E-06 28.7 3.5 28 575-602 1-28 (34)
294 KOG4648 Uncharacterized conser 93.3 0.19 4.2E-06 45.3 5.6 114 474-595 102-215 (536)
295 PF00515 TPR_1: Tetratricopept 93.3 0.27 5.7E-06 27.7 4.5 27 541-567 3-29 (34)
296 PF10602 RPN7: 26S proteasome 93.2 1.5 3.2E-05 36.9 10.5 97 470-566 37-140 (177)
297 KOG3941 Intermediate in Toll s 93.1 1.1 2.5E-05 39.5 9.7 104 433-555 66-174 (406)
298 KOG1585 Protein required for f 92.9 6 0.00013 34.5 18.9 49 407-456 198-249 (308)
299 KOG4648 Uncharacterized conser 92.8 0.71 1.5E-05 41.8 8.3 96 439-538 102-197 (536)
300 KOG0276 Vesicle coat complex C 92.8 2.2 4.7E-05 42.2 11.9 132 401-565 616-747 (794)
301 PRK09687 putative lyase; Provi 92.7 7.9 0.00017 35.5 25.9 233 79-339 35-277 (280)
302 KOG3941 Intermediate in Toll s 92.6 1.3 2.8E-05 39.1 9.4 33 312-344 141-173 (406)
303 PF00515 TPR_1: Tetratricopept 92.5 0.25 5.4E-06 27.9 3.5 27 576-602 2-28 (34)
304 PF08424 NRDE-2: NRDE-2, neces 92.4 9.7 0.00021 35.9 16.4 115 486-602 48-181 (321)
305 KOG1586 Protein required for f 92.4 6.7 0.00015 33.9 18.3 17 339-355 24-40 (288)
306 PF10345 Cohesin_load: Cohesin 92.1 17 0.00037 38.0 41.5 191 410-601 372-603 (608)
307 PF10602 RPN7: 26S proteasome 92.0 2.6 5.6E-05 35.4 10.5 98 505-602 37-140 (177)
308 PF06552 TOM20_plant: Plant sp 92.0 3.7 8.1E-05 33.9 10.8 28 520-549 96-123 (186)
309 PF02259 FAT: FAT domain; Int 92.0 12 0.00026 35.9 25.1 66 398-463 145-213 (352)
310 PF07721 TPR_4: Tetratricopept 91.9 0.28 6E-06 25.7 3.0 23 577-599 3-25 (26)
311 PF06552 TOM20_plant: Plant sp 91.9 1.7 3.6E-05 35.8 8.7 62 521-586 52-124 (186)
312 KOG1550 Extracellular protein 91.9 17 0.00036 37.4 25.9 113 97-216 228-358 (552)
313 KOG1550 Extracellular protein 91.7 18 0.00038 37.2 27.2 180 61-255 227-428 (552)
314 PF10345 Cohesin_load: Cohesin 91.7 19 0.00041 37.6 40.8 189 62-251 37-252 (608)
315 PF08424 NRDE-2: NRDE-2, neces 91.6 12 0.00026 35.2 17.8 119 451-571 48-186 (321)
316 TIGR02561 HrpB1_HrpK type III 91.0 5.9 0.00013 31.6 10.5 53 58-111 22-74 (153)
317 COG2909 MalT ATP-dependent tra 90.9 24 0.00052 37.2 27.7 222 340-564 426-684 (894)
318 KOG2066 Vacuolar assembly/sort 90.8 22 0.00048 36.8 25.3 75 231-311 363-440 (846)
319 PF13374 TPR_10: Tetratricopep 90.6 0.45 9.8E-06 28.3 3.6 25 577-601 4-28 (42)
320 PF13174 TPR_6: Tetratricopept 90.5 0.33 7.2E-06 27.0 2.7 26 577-602 2-27 (33)
321 PF11207 DUF2989: Protein of u 90.5 8.3 0.00018 32.7 11.6 73 133-206 123-198 (203)
322 PRK09687 putative lyase; Provi 90.2 15 0.00032 33.8 27.1 122 433-568 141-263 (280)
323 KOG4570 Uncharacterized conser 90.1 7 0.00015 35.4 11.4 48 379-426 115-162 (418)
324 PF11207 DUF2989: Protein of u 90.1 4.6 0.0001 34.2 9.9 76 168-244 123-198 (203)
325 KOG2471 TPR repeat-containing 90.0 7.4 0.00016 37.6 12.1 307 237-550 30-380 (696)
326 PF09986 DUF2225: Uncharacteri 89.9 2 4.3E-05 37.4 8.1 28 575-602 165-192 (214)
327 PRK10941 hypothetical protein; 89.9 5.1 0.00011 36.2 10.9 79 507-586 184-262 (269)
328 PF07035 Mic1: Colon cancer-as 89.9 10 0.00022 31.3 15.0 21 404-424 94-114 (167)
329 TIGR02561 HrpB1_HrpK type III 89.6 9.2 0.0002 30.6 12.9 51 447-498 23-73 (153)
330 PF13181 TPR_8: Tetratricopept 89.5 0.7 1.5E-05 25.9 3.5 25 577-601 3-27 (34)
331 PF13174 TPR_6: Tetratricopept 89.3 0.7 1.5E-05 25.6 3.4 28 542-569 3-30 (33)
332 PF13374 TPR_10: Tetratricopep 88.8 1.2 2.5E-05 26.4 4.4 26 506-531 4-29 (42)
333 COG1747 Uncharacterized N-term 88.5 27 0.00058 34.3 24.8 165 363-534 65-235 (711)
334 KOG4507 Uncharacterized conser 88.4 3.4 7.3E-05 40.7 8.9 103 93-197 619-721 (886)
335 KOG4642 Chaperone-dependent E3 88.1 13 0.00027 32.5 11.1 118 444-564 20-142 (284)
336 KOG0276 Vesicle coat complex C 88.0 6.8 0.00015 38.9 10.7 27 224-250 666-692 (794)
337 KOG4570 Uncharacterized conser 87.7 9.6 0.00021 34.6 10.6 100 291-392 61-163 (418)
338 KOG3364 Membrane protein invol 87.6 12 0.00026 29.3 9.8 66 503-569 31-101 (149)
339 KOG2066 Vacuolar assembly/sort 87.6 39 0.00084 35.2 27.7 75 124-202 364-439 (846)
340 PF04097 Nic96: Nup93/Nic96; 87.5 40 0.00086 35.2 19.9 43 156-199 116-158 (613)
341 COG1747 Uncharacterized N-term 87.3 31 0.00068 33.9 24.6 96 258-358 65-160 (711)
342 PF13181 TPR_8: Tetratricopept 87.0 2 4.4E-05 23.9 4.4 29 540-568 2-30 (34)
343 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 5.9 0.00013 28.7 7.2 45 417-461 25-69 (103)
344 PRK11619 lytic murein transgly 86.7 44 0.00096 35.0 40.5 147 47-203 34-180 (644)
345 KOG4642 Chaperone-dependent E3 86.7 17 0.00036 31.8 11.1 119 409-530 20-143 (284)
346 PF07035 Mic1: Colon cancer-as 86.6 17 0.00037 30.0 15.7 29 141-169 19-47 (167)
347 PF07163 Pex26: Pex26 protein; 86.5 11 0.00024 33.6 10.2 26 506-531 120-145 (309)
348 KOG4507 Uncharacterized conser 86.1 3.7 8.1E-05 40.4 7.9 101 480-583 618-718 (886)
349 PF02284 COX5A: Cytochrome c o 86.0 7.9 0.00017 28.5 7.6 46 417-462 28-73 (108)
350 COG4455 ImpE Protein of avirul 86.0 6.5 0.00014 33.6 8.2 77 471-548 3-81 (273)
351 COG2909 MalT ATP-dependent tra 85.5 54 0.0012 34.8 31.2 231 159-389 423-684 (894)
352 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 8.1 0.00018 28.1 7.3 47 169-215 25-71 (103)
353 KOG0551 Hsp90 co-chaperone CNS 85.2 6.5 0.00014 36.0 8.4 98 469-567 81-181 (390)
354 KOG1464 COP9 signalosome, subu 85.2 27 0.00058 31.0 18.3 208 289-496 21-258 (440)
355 TIGR03504 FimV_Cterm FimV C-te 85.2 1.3 2.7E-05 26.9 2.9 23 580-602 4-26 (44)
356 PF14561 TPR_20: Tetratricopep 84.9 12 0.00026 27.1 8.4 55 536-590 19-73 (90)
357 KOG1464 COP9 signalosome, subu 84.8 28 0.0006 30.9 18.9 210 322-531 19-258 (440)
358 COG4455 ImpE Protein of avirul 84.1 8.9 0.00019 32.8 8.2 77 436-513 3-81 (273)
359 KOG1308 Hsp70-interacting prot 83.7 1.4 3.1E-05 40.2 3.8 119 445-567 125-243 (377)
360 COG3947 Response regulator con 83.5 22 0.00047 32.1 10.6 60 506-566 281-340 (361)
361 KOG2396 HAT (Half-A-TPR) repea 83.5 48 0.001 32.6 38.6 96 501-600 456-555 (568)
362 KOG1308 Hsp70-interacting prot 83.1 1.9 4.2E-05 39.4 4.4 87 412-500 127-213 (377)
363 PRK11619 lytic murein transgly 82.7 67 0.0015 33.7 37.8 119 376-497 253-374 (644)
364 KOG3364 Membrane protein invol 82.4 17 0.00036 28.5 8.4 66 536-602 29-98 (149)
365 PF14561 TPR_20: Tetratricopep 81.6 18 0.00038 26.3 8.9 64 68-132 10-74 (90)
366 PF09986 DUF2225: Uncharacteri 81.3 36 0.00078 29.7 11.8 68 504-571 118-197 (214)
367 PF00637 Clathrin: Region in C 80.8 0.82 1.8E-05 36.9 1.2 86 474-566 12-97 (143)
368 KOG0890 Protein kinase of the 80.6 1.4E+02 0.003 36.0 36.8 154 191-353 1388-1542(2382)
369 PF13170 DUF4003: Protein of u 80.2 50 0.0011 30.6 21.9 21 243-263 81-101 (297)
370 KOG2063 Vacuolar assembly/sort 80.0 64 0.0014 34.8 14.5 28 401-428 506-533 (877)
371 TIGR03504 FimV_Cterm FimV C-te 79.3 4.5 9.7E-05 24.5 3.7 26 544-569 4-29 (44)
372 smart00777 Mad3_BUB1_I Mad3/BU 78.3 30 0.00065 27.0 9.1 45 556-600 80-124 (125)
373 KOG0545 Aryl-hydrocarbon recep 78.1 25 0.00055 30.8 9.0 102 469-571 178-296 (329)
374 PF10579 Rapsyn_N: Rapsyn N-te 77.6 6 0.00013 27.5 4.3 47 516-562 18-66 (80)
375 PF08311 Mad3_BUB1_I: Mad3/BUB 77.3 26 0.00056 27.5 8.5 44 557-600 81-124 (126)
376 PF02284 COX5A: Cytochrome c o 77.2 27 0.00058 25.8 9.8 47 169-215 28-74 (108)
377 smart00028 TPR Tetratricopepti 76.9 3.1 6.6E-05 22.2 2.6 25 577-601 3-27 (34)
378 KOG1586 Protein required for f 76.8 51 0.0011 28.9 20.7 23 233-255 163-185 (288)
379 KOG0376 Serine-threonine phosp 76.7 4.9 0.00011 38.7 5.1 105 441-549 11-115 (476)
380 smart00028 TPR Tetratricopepti 76.4 6 0.00013 20.9 3.8 26 542-567 4-29 (34)
381 TIGR02508 type_III_yscG type I 76.3 28 0.00061 25.6 8.6 51 125-181 48-98 (115)
382 PF00637 Clathrin: Region in C 76.1 1.7 3.7E-05 35.1 1.8 53 88-140 14-66 (143)
383 PF07163 Pex26: Pex26 protein; 75.5 38 0.00083 30.5 9.7 87 123-209 90-181 (309)
384 PF14853 Fis1_TPR_C: Fis1 C-te 75.4 10 0.00022 24.1 4.7 25 544-568 6-30 (53)
385 KOG0530 Protein farnesyltransf 74.0 66 0.0014 28.8 14.3 175 409-589 53-236 (318)
386 PRK10941 hypothetical protein; 73.7 60 0.0013 29.5 11.0 61 472-533 184-244 (269)
387 KOG2063 Vacuolar assembly/sort 73.7 1.4E+02 0.003 32.4 19.3 40 194-236 599-638 (877)
388 COG3947 Response regulator con 72.7 76 0.0016 28.9 16.5 60 471-531 281-340 (361)
389 PF04910 Tcf25: Transcriptiona 72.5 94 0.002 29.9 20.1 43 61-108 25-67 (360)
390 TIGR02508 type_III_yscG type I 72.0 25 0.00054 25.8 6.4 82 58-146 17-98 (115)
391 KOG2062 26S proteasome regulat 71.4 1.4E+02 0.003 31.3 37.3 179 64-253 41-239 (929)
392 COG0790 FOG: TPR repeat, SEL1 70.6 90 0.0019 28.9 22.9 116 449-571 128-269 (292)
393 smart00386 HAT HAT (Half-A-TPR 70.3 11 0.00025 20.3 3.9 29 60-89 1-29 (33)
394 KOG2062 26S proteasome regulat 70.2 1.5E+02 0.0031 31.1 33.1 183 98-288 40-239 (929)
395 KOG4077 Cytochrome c oxidase, 70.0 44 0.00095 25.9 7.6 46 488-533 68-113 (149)
396 KOG2034 Vacuolar sorting prote 69.8 1.6E+02 0.0035 31.5 25.0 176 86-285 363-556 (911)
397 COG5159 RPN6 26S proteasome re 69.5 88 0.0019 28.3 20.7 54 264-317 8-68 (421)
398 PRK12798 chemotaxis protein; R 69.4 1.1E+02 0.0024 29.5 22.3 156 377-533 125-286 (421)
399 PF11817 Foie-gras_1: Foie gra 69.3 23 0.00051 31.8 7.5 58 543-600 182-243 (247)
400 PF10255 Paf67: RNA polymerase 69.1 24 0.00052 34.1 7.7 100 468-567 74-192 (404)
401 PF10579 Rapsyn_N: Rapsyn N-te 67.4 18 0.00039 25.2 4.7 46 481-526 18-65 (80)
402 COG0790 FOG: TPR repeat, SEL1 67.2 1.1E+02 0.0023 28.4 23.6 150 58-216 53-221 (292)
403 PF12862 Apc5: Anaphase-promot 67.1 41 0.00089 24.6 7.2 22 545-566 47-68 (94)
404 KOG4521 Nuclear pore complex, 67.0 2.1E+02 0.0046 31.8 14.3 156 160-317 929-1125(1480)
405 PF07575 Nucleopor_Nup85: Nup8 66.4 86 0.0019 32.5 11.8 59 226-286 407-465 (566)
406 KOG0376 Serine-threonine phosp 66.0 17 0.00036 35.4 5.9 105 406-515 11-116 (476)
407 KOG0551 Hsp90 co-chaperone CNS 65.4 54 0.0012 30.4 8.6 98 434-532 81-181 (390)
408 PF14689 SPOB_a: Sensor_kinase 65.1 21 0.00046 23.6 4.8 46 168-215 7-52 (62)
409 KOG2659 LisH motif-containing 64.9 78 0.0017 27.7 9.1 103 465-567 22-131 (228)
410 PF09477 Type_III_YscG: Bacter 64.8 57 0.0012 24.5 9.9 79 96-181 21-99 (116)
411 PF14853 Fis1_TPR_C: Fis1 C-te 64.7 12 0.00027 23.8 3.4 26 577-602 3-28 (53)
412 PRK12798 chemotaxis protein; R 64.6 1.4E+02 0.0031 28.9 18.9 50 94-143 125-175 (421)
413 PF04190 DUF410: Protein of un 64.3 1.1E+02 0.0025 27.7 19.6 102 60-176 4-115 (260)
414 KOG4077 Cytochrome c oxidase, 64.3 56 0.0012 25.3 7.2 44 419-462 69-112 (149)
415 PF04910 Tcf25: Transcriptiona 63.3 1.5E+02 0.0032 28.6 18.4 92 510-601 109-219 (360)
416 PF12862 Apc5: Anaphase-promot 62.9 41 0.0009 24.6 6.5 21 231-251 48-68 (94)
417 PF04762 IKI3: IKI3 family; I 62.0 1E+02 0.0022 34.2 11.7 15 587-601 913-927 (928)
418 PF14689 SPOB_a: Sensor_kinase 61.4 22 0.00048 23.5 4.3 25 542-566 26-50 (62)
419 PF07720 TPR_3: Tetratricopept 61.1 20 0.00043 20.6 3.5 24 576-599 2-25 (36)
420 KOG2908 26S proteasome regulat 61.1 94 0.002 29.0 9.3 76 194-269 83-166 (380)
421 PF00244 14-3-3: 14-3-3 protei 59.8 1.3E+02 0.0028 26.9 10.8 48 521-568 143-198 (236)
422 PF09477 Type_III_YscG: Bacter 59.8 72 0.0016 24.0 9.6 79 165-253 20-98 (116)
423 PF09670 Cas_Cas02710: CRISPR- 59.1 1.8E+02 0.0039 28.3 11.8 57 88-145 138-198 (379)
424 PF07575 Nucleopor_Nup85: Nup8 56.8 2.5E+02 0.0054 29.2 18.8 42 316-357 392-433 (566)
425 PF08311 Mad3_BUB1_I: Mad3/BUB 56.5 95 0.0021 24.3 8.4 44 522-565 81-125 (126)
426 KOG0128 RNA-binding protein SA 56.5 2.8E+02 0.006 29.7 38.3 113 63-179 96-218 (881)
427 KOG1839 Uncharacterized protei 56.5 2.1E+02 0.0046 32.3 12.5 158 441-598 939-1122(1236)
428 KOG2908 26S proteasome regulat 56.4 1.3E+02 0.0029 28.1 9.4 53 445-497 86-143 (380)
429 PF04190 DUF410: Protein of un 56.3 1.6E+02 0.0034 26.8 16.9 82 467-568 88-170 (260)
430 PF09670 Cas_Cas02710: CRISPR- 56.2 1.8E+02 0.004 28.2 11.3 55 408-463 140-198 (379)
431 PF11846 DUF3366: Domain of un 56.2 46 0.001 28.5 6.7 45 523-569 130-174 (193)
432 KOG2422 Uncharacterized conser 55.5 2.4E+02 0.0052 28.7 18.4 94 159-252 350-447 (665)
433 KOG3677 RNA polymerase I-assoc 54.6 1.3E+02 0.0027 29.1 9.2 60 119-178 238-299 (525)
434 KOG0686 COP9 signalosome, subu 54.1 2.1E+02 0.0046 27.6 14.7 63 295-357 151-215 (466)
435 KOG4521 Nuclear pore complex, 53.8 3.6E+02 0.0079 30.2 16.0 19 90-108 929-947 (1480)
436 KOG0403 Neoplastic transformat 53.6 2.3E+02 0.0049 27.8 28.8 77 86-165 55-133 (645)
437 cd00280 TRFH Telomeric Repeat 52.1 1.2E+02 0.0025 25.6 7.7 20 478-497 120-139 (200)
438 PRK14700 recombination factor 52.0 1.8E+02 0.0038 26.9 9.7 36 95-130 140-175 (300)
439 PF11846 DUF3366: Domain of un 51.9 77 0.0017 27.1 7.4 33 501-533 141-173 (193)
440 COG4976 Predicted methyltransf 51.3 52 0.0011 28.7 5.9 58 58-117 7-64 (287)
441 cd02679 MIT_spastin MIT: domai 51.2 47 0.001 23.3 4.7 13 553-565 22-34 (79)
442 COG4259 Uncharacterized protei 51.2 54 0.0012 24.0 5.0 56 520-578 53-108 (121)
443 PF10516 SHNi-TPR: SHNi-TPR; 50.2 26 0.00056 20.5 2.8 25 577-601 3-27 (38)
444 KOG0991 Replication factor C, 49.7 1.9E+02 0.004 25.6 15.3 92 409-503 169-272 (333)
445 cd00280 TRFH Telomeric Repeat 49.5 1.1E+02 0.0024 25.7 7.2 20 160-179 120-139 (200)
446 COG4976 Predicted methyltransf 49.0 32 0.00069 29.9 4.3 54 480-534 6-59 (287)
447 KOG3824 Huntingtin interacting 48.8 78 0.0017 28.9 6.8 51 93-144 128-178 (472)
448 PF15297 CKAP2_C: Cytoskeleton 48.7 2.3E+02 0.0049 26.8 9.8 44 542-586 143-186 (353)
449 KOG0292 Vesicle coat complex C 48.3 65 0.0014 34.2 7.0 72 445-531 654-725 (1202)
450 PF13929 mRNA_stabil: mRNA sta 48.2 2.2E+02 0.0048 26.1 21.1 64 361-424 199-263 (292)
451 PF13929 mRNA_stabil: mRNA sta 48.1 2.2E+02 0.0048 26.1 17.6 63 396-458 199-262 (292)
452 KOG0403 Neoplastic transformat 47.2 2.9E+02 0.0062 27.1 19.7 61 403-464 513-573 (645)
453 PRK15180 Vi polysaccharide bio 46.6 3E+02 0.0066 27.2 30.7 87 196-287 333-419 (831)
454 KOG0292 Vesicle coat complex C 46.5 2.6E+02 0.0056 30.2 10.7 177 198-427 605-781 (1202)
455 PF10366 Vps39_1: Vacuolar sor 45.9 1.3E+02 0.0028 22.8 7.7 26 189-214 42-67 (108)
456 COG5191 Uncharacterized conser 45.8 72 0.0016 29.3 6.1 78 432-511 105-183 (435)
457 PF10475 DUF2450: Protein of u 45.5 2.5E+02 0.0055 26.0 12.1 53 157-215 104-156 (291)
458 KOG0128 RNA-binding protein SA 45.5 4.1E+02 0.009 28.5 36.0 97 150-252 112-218 (881)
459 PF11663 Toxin_YhaV: Toxin wit 44.7 30 0.00066 27.1 3.3 32 235-268 106-137 (140)
460 PRK13800 putative oxidoreducta 44.7 4.9E+02 0.011 29.1 29.9 93 467-566 787-879 (897)
461 KOG4567 GTPase-activating prot 44.2 1.6E+02 0.0035 27.1 8.0 57 454-515 263-319 (370)
462 PRK10564 maltose regulon perip 44.1 50 0.0011 30.2 5.0 36 507-542 260-295 (303)
463 COG0735 Fur Fe2+/Zn2+ uptake r 43.7 1.6E+02 0.0035 23.8 7.5 48 84-131 23-70 (145)
464 PF11817 Foie-gras_1: Foie gra 43.6 1.2E+02 0.0026 27.3 7.6 56 509-564 183-243 (247)
465 COG5191 Uncharacterized conser 43.6 72 0.0016 29.3 5.8 80 465-546 103-183 (435)
466 COG5159 RPN6 26S proteasome re 43.2 2.6E+02 0.0057 25.5 21.7 52 229-280 8-66 (421)
467 PRK10564 maltose regulon perip 42.7 54 0.0012 30.0 5.0 38 84-121 260-297 (303)
468 PHA02875 ankyrin repeat protei 42.7 3.4E+02 0.0074 26.7 13.2 207 234-469 9-230 (413)
469 KOG2297 Predicted translation 41.2 2.9E+02 0.0064 25.5 19.0 19 436-454 323-341 (412)
470 COG0735 Fur Fe2+/Zn2+ uptake r 40.5 1.7E+02 0.0036 23.7 7.1 29 475-503 26-54 (145)
471 COG5108 RPO41 Mitochondrial DN 40.3 2.7E+02 0.0059 28.9 9.6 75 439-516 33-115 (1117)
472 KOG0686 COP9 signalosome, subu 40.0 3.6E+02 0.0078 26.2 13.9 63 400-462 151-215 (466)
473 COG4941 Predicted RNA polymera 39.9 3.3E+02 0.0071 25.7 10.2 121 448-571 270-397 (415)
474 KOG2300 Uncharacterized conser 39.1 4.1E+02 0.0088 26.5 43.1 157 411-567 335-513 (629)
475 KOG4567 GTPase-activating prot 38.0 3.4E+02 0.0073 25.2 8.9 43 385-427 264-306 (370)
476 PF00244 14-3-3: 14-3-3 protei 36.7 3.1E+02 0.0067 24.5 9.5 37 267-303 9-45 (236)
477 cd08819 CARD_MDA5_2 Caspase ac 36.7 1.6E+02 0.0035 21.2 7.2 12 344-355 51-62 (88)
478 PF11848 DUF3368: Domain of un 36.5 1.1E+02 0.0023 19.0 5.1 32 92-123 13-44 (48)
479 PF11123 DNA_Packaging_2: DNA 36.3 98 0.0021 21.2 4.1 31 519-550 12-42 (82)
480 PF13762 MNE1: Mitochondrial s 36.1 2.3E+02 0.0051 22.9 10.2 80 403-482 43-128 (145)
481 PF02184 HAT: HAT (Half-A-TPR) 35.9 82 0.0018 17.6 3.4 12 521-532 4-15 (32)
482 PF11838 ERAP1_C: ERAP1-like C 35.7 3.8E+02 0.0082 25.2 19.8 81 240-323 146-230 (324)
483 KOG0991 Replication factor C, 35.4 3.2E+02 0.0069 24.2 13.1 36 431-467 236-271 (333)
484 PHA02875 ankyrin repeat protei 35.3 4.4E+02 0.0096 25.9 13.0 201 206-434 15-230 (413)
485 PF10366 Vps39_1: Vacuolar sor 35.3 1.1E+02 0.0024 23.2 5.0 26 367-392 42-67 (108)
486 KOG1839 Uncharacterized protei 35.2 6.9E+02 0.015 28.6 12.4 156 409-564 942-1124(1236)
487 KOG3824 Huntingtin interacting 35.2 89 0.0019 28.6 5.1 56 514-570 126-181 (472)
488 COG2912 Uncharacterized conser 35.0 2.6E+02 0.0056 25.4 7.9 57 513-570 190-246 (269)
489 COG5108 RPO41 Mitochondrial DN 34.2 3.6E+02 0.0077 28.1 9.3 90 229-321 33-130 (1117)
490 COG4941 Predicted RNA polymera 34.1 4.1E+02 0.0088 25.1 11.1 83 166-253 311-394 (415)
491 KOG2297 Predicted translation 34.0 3.9E+02 0.0084 24.8 15.7 70 410-489 266-341 (412)
492 PF09454 Vps23_core: Vps23 cor 33.9 1.1E+02 0.0025 20.5 4.3 44 504-548 8-51 (65)
493 PF11663 Toxin_YhaV: Toxin wit 33.4 43 0.00094 26.3 2.6 30 59-90 108-137 (140)
494 PRK11639 zinc uptake transcrip 32.7 2.9E+02 0.0062 23.1 7.6 50 84-133 28-77 (169)
495 KOG0989 Replication factor C, 32.3 4.2E+02 0.0092 24.7 14.6 51 514-565 265-316 (346)
496 cd08819 CARD_MDA5_2 Caspase ac 32.2 2E+02 0.0042 20.8 7.4 14 483-496 50-63 (88)
497 KOG3807 Predicted membrane pro 32.1 4.3E+02 0.0093 24.7 13.1 170 404-588 189-359 (556)
498 KOG2422 Uncharacterized conser 32.0 5.8E+02 0.013 26.2 20.6 157 59-215 251-448 (665)
499 KOG2659 LisH motif-containing 32.0 3.6E+02 0.0078 23.8 11.7 101 430-532 22-131 (228)
500 PF13934 ELYS: Nuclear pore co 31.2 3.7E+02 0.0081 23.8 14.9 81 126-214 88-168 (226)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.9e-72 Score=592.44 Aligned_cols=519 Identities=23% Similarity=0.305 Sum_probs=503.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|+++.|+++|++| +.||+.+|+.++.+|.+.|++++|+++|++|...|+.||..+|+.++.+|...++++.+.+
T Consensus 133 ~~g~~~~A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 133 RFGELVHAWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred hCCChHHHHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 578999999999999 6789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
++..+.+.|+.|+..++|.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g- 283 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELS- 283 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-
Confidence 99999999999999999999999999999999999999997 6799999999999999999999999999999987
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
..||..+|+.++.+|.+.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|
T Consensus 284 --~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~ 357 (857)
T PLN03077 284 --VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSW 357 (857)
T ss_pred --CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeH
Confidence 8999999999999999999999999999999999999999999999999999999999999999986 5799999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.++..+++.|+.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+++.+.+++
T Consensus 438 g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~ 512 (857)
T PLN03077 438 KCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIH 512 (857)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHH
Confidence 999999999999875 5889999999999999999999999999986 58999999999999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
..+.+.|+.++..+++.|+.+|+++|++++|.++|+.+ .||..+|+.++.+|+++|+.++|+++|++|.+.|+.|
T Consensus 513 ~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999987 4799999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMA-AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|..||..++.+|.+.|++++|.++++.|. +.++. |+..+|..++++|.+.|+++||.+++++|+
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 99999999999999999999999999999 67888 999999999999999999999999999985
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-68 Score=553.51 Aligned_cols=507 Identities=19% Similarity=0.297 Sum_probs=429.2
Q ss_pred CCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 59 NITSNEAVYFFDCMIKMKP-SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
.|++++|+++|++|...+. .++...++.++..|.+.|..++|..+|+.|.. ||..+|+.++.+|++.|+++.|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 5788888888888877663 35666777888888888888888888888863 788888888888888888888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
+|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G- 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN- 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC-
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888776
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh--CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKD--RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVV 295 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 295 (603)
..||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..
T Consensus 538 --v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 538 --VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 788888888888888888888888888888875 5678888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 037409 296 TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANC 375 (603)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (603)
+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.+|.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHH
Q 037409 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQ 455 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 455 (603)
+.|++++|.++|++|...+..||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHh----C-------------------CChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 456 VFQAIRNCKCELRIETYNCLINGLCK----M-------------------GRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
++++|.+.|+.|+..+|+.++..|.+ + +..+.|..+|++|.+.|+.||..+|+.++.
T Consensus 776 l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 776 LLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLG 855 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence 88888888888888888888765432 1 123568888888888888888888888887
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDL 575 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 575 (603)
+++..+..+.+..+++.|...+..|+..+|..++.++.+. .++|..++++|.+.|+. |+.
T Consensus 856 cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~-p~~ 915 (1060)
T PLN03218 856 CLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV-PSV 915 (1060)
T ss_pred HhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC-CCc
Confidence 7777788888888888887777778888888888877322 35788888888888877 554
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.6e-68 Score=550.26 Aligned_cols=527 Identities=17% Similarity=0.250 Sum_probs=492.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 037409 64 EAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGL-FPDLFVLNLLINCLCKMGITSGAFVVLGRI 142 (603)
Q Consensus 64 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 142 (603)
.++...+.... +.++...|..++..+.+.|++++|+++|++|.+.|+ +++..++..++..|.+.|..++|..+++.|
T Consensus 355 ~~~~~~~~~~~--~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M 432 (1060)
T PLN03218 355 NSLAAYNGGVS--GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432 (1060)
T ss_pred hhHHHhccccC--CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc
Confidence 34444444433 456778899999999999999999999999999985 467778888999999999999999999888
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
.. |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.+ ..|
T Consensus 433 ~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G---v~P 505 (1060)
T PLN03218 433 RN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG---VEA 505 (1060)
T ss_pred CC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC---CCC
Confidence 64 89999999999999999999999999999999999999999999999999999999999999999987 889
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD--NGVQPDVVTFNAM 300 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l 300 (603)
|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.+
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaL 585 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 5789999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
+.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
++|.++|++|.+.|..|+..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|
T Consensus 666 eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 666 DKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----c-------------------
Q 037409 461 RNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----E------------------- 517 (603)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------------------- 517 (603)
.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n 825 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIEN 825 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999866432 1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
+..++|..+|++|++.|+.||..+|..++.++...+..+.+..+++.|...+.. |+..+|..+++.+.+. .++|..+
T Consensus 826 ~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~-~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 826 KWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADS-QKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred chHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCC-cchhhhHHHHHhhccC--hHHHHHH
Confidence 123679999999999999999999999998888999999999999988766666 8899999999988432 3689999
Q ss_pred HHhhc
Q 037409 598 FRHLL 602 (603)
Q Consensus 598 ~~~~l 602 (603)
++.|.
T Consensus 903 ~~em~ 907 (1060)
T PLN03218 903 LEEAA 907 (1060)
T ss_pred HHHHH
Confidence 99885
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-67 Score=556.42 Aligned_cols=521 Identities=19% Similarity=0.273 Sum_probs=418.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++++|+.+|++|...+..||..+|+.++.++.+.+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|..
T Consensus 164 ~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
+|++|. .+|..+||.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.|.+++..+.+.+
T Consensus 244 lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g- 318 (857)
T PLN03077 244 VFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG- 318 (857)
T ss_pred HHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-
Confidence 999985 468899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|
T Consensus 319 --~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 319 --FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred --CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 889999999999999999999999999999864 58899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
+.++.+|++.|+++.+.++++.+.+.|..|+..+++.++.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999864 4788999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
|+.++|+.+|++|.. +..||..+|+.++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|++.|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999975 4888888888888777777777777777777766666555555555555555555555555554
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH-HCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME-AKNCV 536 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 536 (603)
+.+ ++|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 443 344455555555555555555555555555555555555555555555555555555555555554 33445
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH--------------------------------HHHCCCCCCCHHHHHHHHHH
Q 037409 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHK--------------------------------MAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------------------------------~~~~~~~~~~~~~~~~l~~~ 584 (603)
|+..+|..++.+|.+.|++++|.+++++ +.+..+ .+...|..+.++
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p--~~~~~y~ll~n~ 700 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDP--NSVGYYILLCNL 700 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCcchHHHHHHH
Confidence 5555555555555555555555555544 444322 356667777777
Q ss_pred HHcCCcHHHHHHHHHhh
Q 037409 585 LSKDKKYRECLNQFRHL 601 (603)
Q Consensus 585 ~~~~g~~~eA~~~~~~~ 601 (603)
|.+.|+|++|.++.+.|
T Consensus 701 ya~~g~~~~a~~vr~~M 717 (857)
T PLN03077 701 YADAGKWDEVARVRKTM 717 (857)
T ss_pred HHHCCChHHHHHHHHHH
Confidence 77788888887777766
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=6.2e-64 Score=518.60 Aligned_cols=474 Identities=18% Similarity=0.267 Sum_probs=454.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 79 PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG-LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
.+..+|+.++..+.+.|++++|+++|+.|...+ +.||..+|+.++.+|.+.++++.+.+++..+.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 456689999999999999999999999998764 6799999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.+ ..|+..+|+.++.++.+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~~t~~~ll~a~~~~ 237 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTFVVMLRASAGL 237 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCChhhHHHHHHHHhcC
Confidence 999999999999999999997 6899999999999999999999999999999887 889999999999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. ++|..+|+.++.+|++.|++++|.++|
T Consensus 238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf 313 (697)
T PLN03081 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLY 313 (697)
T ss_pred CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999996 569999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037409 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRP 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 397 (603)
++|.+.|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+++.|+.+|++.|++++|.++|++|.+ |
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----K 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999965 6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN-CKCELRIETYNCLI 476 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~ 476 (603)
|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .++.|+..+|++++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986 69999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
.+|++.|++++|.+++++|. ..|+..+|+.++.+|..+|+++.|..+++++.+.+ +.+..+|..+++.|.+.|+++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHH
Confidence 99999999999999998764 67999999999999999999999999999998764 445778999999999999999
Q ss_pred HHHHHHHHHHHCCCC
Q 037409 557 KVVVLLHKMAAEKLV 571 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~ 571 (603)
+|.++++.|.+.|+.
T Consensus 546 ~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 546 EAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHcCCc
Confidence 999999999998875
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.6e-61 Score=495.63 Aligned_cols=470 Identities=18% Similarity=0.246 Sum_probs=449.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHH
Q 037409 113 FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSC-FTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNT 191 (603)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 191 (603)
..+...++.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.++.+.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4456689999999999999999999999998865 679999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 037409 192 LINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC 271 (603)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (603)
++..|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.+++.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 9999999999999999999995 479999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037409 272 VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 272 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 351 (603)
.|..+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|+.++|.++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~l 312 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCL 312 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 35889999999999999999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV 431 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (603)
|++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|..||..+++.++.+|++.|++++|.++|++|.+
T Consensus 313 f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---- 388 (697)
T PLN03081 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---- 388 (697)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh-CCCCCCHhHHHHH
Q 037409 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH-KGPIPDVVTCSTM 510 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 510 (603)
||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 688999999999999999999999999999999999999999999999999999999999999986 6899999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
+.+|++.|++++|.+++++| ++.|+..+|..|+.+|...|+++.|..+++++.+.++ .+...|..++++|.+.|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p--~~~~~y~~L~~~y~~~G~ 543 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP--EKLNNYVVLLNLYNSSGR 543 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC--CCCcchHHHHHHHHhCCC
Confidence 99999999999999999876 4689999999999999999999999999999986544 477899999999999999
Q ss_pred HHHHHHHHHhhc
Q 037409 591 YRECLNQFRHLL 602 (603)
Q Consensus 591 ~~eA~~~~~~~l 602 (603)
+++|.++++.|.
T Consensus 544 ~~~A~~v~~~m~ 555 (697)
T PLN03081 544 QAEAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHHHH
Confidence 999999999874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-37 Score=338.35 Aligned_cols=523 Identities=12% Similarity=0.055 Sum_probs=389.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|++++|...|++++..+|. +...|..+...+...|++++|+..|+.+.+.+ +........++..+.+.|++++|..+
T Consensus 376 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 453 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAA 453 (899)
T ss_pred CCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHH
Confidence 34455555555554444332 34444444444445555555555555544432 22223333444455555555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
++.+.... +.+..++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++...
T Consensus 454 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 528 (899)
T TIGR02917 454 AKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--- 528 (899)
T ss_pred HHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 55555442 2355566777777777777777777777766543 334556666677777777777777777777765
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 037409 219 ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFN 298 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 298 (603)
.+.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...|++++|..+++.+.+.. +.+...|.
T Consensus 529 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 605 (899)
T TIGR02917 529 -DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWL 605 (899)
T ss_pred -CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHH
Confidence 34566677777777777777777877777776653 3355667777788888888888888888877653 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (603)
.+...+...|++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 888888888888888888888876643 355667778888888888888888888887763 335667778888888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 037409 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
++++|..+++.+..... .+...+..+...+...|++++|...++.+.... |+..++..++.++...|++++|.+.++
T Consensus 684 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888888888877643 466777888888889999999999999888764 344667778888999999999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 037409 459 AIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS 538 (603)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 538 (603)
.+.+.. +.+...+..++..|...|++++|...|+++.+.++. +...++.++..+...|+ ++|+.+++++.+.. +.+
T Consensus 761 ~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~ 836 (899)
T TIGR02917 761 AWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNI 836 (899)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCC
Confidence 988765 668889999999999999999999999999988665 78889999999999999 88999999999874 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 539 EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.++..++.++...|++++|.++++++++.++. ++.++..++.+|.+.|++++|++++++|+
T Consensus 837 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 837 PAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 778889999999999999999999999997765 89999999999999999999999999986
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-36 Score=328.31 Aligned_cols=524 Identities=13% Similarity=0.052 Sum_probs=388.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++++|+..+++++...|. +...+..++..+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHH
Confidence 345555555555555554332 44555555555666666666666666655543 3344455555555556666666666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
.++.+.+..+. +......++..+.+.|++++|..+++++.... +++..+|..+...+...|++++|.+.|+++.+.
T Consensus 419 ~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 494 (899)
T TIGR02917 419 DLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSI-- 494 (899)
T ss_pred HHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--
Confidence 66655554332 23344445556666666666766666665542 445667777777788888888888888887765
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
.+.+...+..++..+...|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|..+++++...+ +.+...+
T Consensus 495 --~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 570 (899)
T TIGR02917 495 --EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPA 570 (899)
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHH
Confidence 24556667777777788888888888888877653 3366777778888888888888888888877664 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
..++..+.+.|++++|..+++.+.+.. +.+...+..++..+...|++++|.+.++.+.+.. +.+...+..+..++.+.
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 778888888888888888888887654 3466778888888888888888888888887764 33556677788888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
|++++|...|+++....+ .+..++..++..+...|++++|..+++.+....+ .+...+..+...+...|++++|...|
T Consensus 649 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 649 KNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred CCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888888877533 3567788888888888889999888888877653 36667777888888899999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
+.+.... |+..++..++.++.+.|++++|...++++.+..+. +...+..++..|...|++++|...|+++.+.+ ++
T Consensus 727 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~ 802 (899)
T TIGR02917 727 RKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PD 802 (899)
T ss_pred HHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CC
Confidence 8888754 34467778888899999999999999998887665 78888889999999999999999999999875 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..++..++..+...|+ .+|+.+++++.+..+. ++..+..++.++...|++++|.+++++++
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN--IPAILDTLGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888899999999999 8899999999886554 77788889999999999999999998875
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.5e-29 Score=271.57 Aligned_cols=537 Identities=14% Similarity=0.051 Sum_probs=389.2
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH-----------
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVL----------- 119 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------- 119 (603)
-+.++-...++.+.|.+.+++++..+|. ++..+..++..+.+.|+.++|.+.++++.+.. |.+....
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~-~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPN-NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCC
Confidence 3344455678999999999999998776 78888999999999999999999999998875 4444432
Q ss_pred -----HHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 037409 120 -----NLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLIN 194 (603)
Q Consensus 120 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
......+...|++++|.+.++++.+..++........+.......|+.++|++.++++.+.. +.+...+..+..
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 23345688899999999999999877543222222222222334689999999999998863 446667888888
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCc-------------cC----------------CChhhH------------------
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAI-------------CK----------------PDVVTY------------------ 227 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~----------------~~~~~~------------------ 227 (603)
.+...|+.++|++.++++....... .+ |+....
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 9999999999999998876432000 00 000000
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH------
Q 037409 228 ---NSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP-DVVTF------ 297 (603)
Q Consensus 228 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~------ 297 (603)
......+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....|
T Consensus 270 ~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 270 FRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 012345677899999999999988763 3377888999999999999999999999988764221 11112
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHH-
Q 037409 298 ------NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNIL- 370 (603)
Q Consensus 298 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l- 370 (603)
......+.+.|++++|...++++.+..+ .+...+..+...+...|++++|++.|+++++... .+...+..+
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 1224467788999999999999988753 3566777888899999999999999999887631 122222222
Q ss_pred -----------------------------------------HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037409 371 -----------------------------------------INANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409 (603)
Q Consensus 371 -----------------------------------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (603)
...+...|++++|++.|++.++..+. +...+..+...|
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~ 505 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDL 505 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 23345678888888888888876433 556677788888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH--------------------------------------------HH
Q 037409 410 FQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG--------------------------------------------LC 445 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------------------------------------------~~ 445 (603)
.+.|++++|...++++.+..+. +...+..+... +.
T Consensus 506 ~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 506 RQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 8899999999999888764332 23222222222 33
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 037409 446 KNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
..|+.++|.++++ ..+.++..+..+...+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|++
T Consensus 585 ~~G~~~eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 585 DSGKEAEAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HCCCHHHHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 3444444444443 12556667788888899999999999999999987665 78888899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVV-S---DLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.++++.+.. +.+..++..++.++...|++++|.+++++++...... | +...+..++.++.+.|++++|++.|++.
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888764 4456677888889999999999999999998754431 2 2346667788999999999999998876
Q ss_pred c
Q 037409 602 L 602 (603)
Q Consensus 602 l 602 (603)
+
T Consensus 738 l 738 (1157)
T PRK11447 738 M 738 (1157)
T ss_pred H
Confidence 4
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.3e-26 Score=238.67 Aligned_cols=524 Identities=12% Similarity=0.010 Sum_probs=363.3
Q ss_pred HHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037409 48 AKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 48 ~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (603)
..|..+......|++++|+..|++++..+|. +..++..++..|.+.|++++|+..++++++.+ |.|...+..+ ..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i- 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI- 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh-
Confidence 3467777777789999999999999999988 59999999999999999999999999999885 4445555444 222
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH--------HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH-HHHHHh
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLING--------LCAEGRIMEAARLFKKLNVFACDPNVVTFNTL-INGLCR 198 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~ 198 (603)
+++++|..+++++.+..+. +..++..+... |.+.+...++++ .......|+..+.... ...|.+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred --ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHH
Confidence 9999999999999998655 55666666555 555544444444 2222223345544444 888888
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK-DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKE 277 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (603)
.|++++|++.++++.+.+ +.+......+...|.. .++ +++..+++. ..+.++..+..++..|.+.|+.++
T Consensus 195 l~dw~~Ai~lL~~L~k~~----pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~ 265 (987)
T PRK09782 195 LKQWSQADTLYNEARQQN----TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKAR 265 (987)
T ss_pred HhCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999888863 3444445566666666 355 666666443 222466777777777777777777
Q ss_pred HHHHHHHHHHCCCC-CCHH-------------------------------------------------------------
Q 037409 278 AKCLFIEMMDNGVQ-PDVV------------------------------------------------------------- 295 (603)
Q Consensus 278 A~~~~~~~~~~~~~-~~~~------------------------------------------------------------- 295 (603)
|..+++++...-.. |...
T Consensus 266 A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (987)
T PRK09782 266 LQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEML 345 (987)
T ss_pred HHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHH
Confidence 77777665422100 1111
Q ss_pred --------------------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHHh
Q 037409 296 --------------------------------TFNAMINYNCKDGKMDKVNRLLELMIQR-G-VNPDTVTYNSLMDGFCL 341 (603)
Q Consensus 296 --------------------------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~ 341 (603)
....+.....+.|+.++|.++++..... + ..++.....-++..|.+
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 425 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLES 425 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHh
Confidence 1111111223344445555555544431 0 11122233345555555
Q ss_pred cCC---HHHHHHH----------------------HHHHHHc-CC-CC--CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 342 VGR---ISRAREL----------------------FVSMVSK-GC-RH--DVYSYNILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 342 ~~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
.+. ..++..+ +...... +. ++ +...+..+..++.. ++.++|+..+.+...
T Consensus 426 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~ 504 (987)
T PRK09782 426 HPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ 504 (987)
T ss_pred CCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH
Confidence 443 2222221 1111111 11 22 44556666666665 788889998887776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHH
Q 037409 393 ERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETY 472 (603)
Q Consensus 393 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 472 (603)
.. |+......+...+...|++++|...++++... .|+...+..+...+.+.|++++|...++...+.. +.+...+
T Consensus 505 ~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~ 579 (987)
T PRK09782 505 RQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALY 579 (987)
T ss_pred hC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHH
Confidence 53 45443334445556899999999999987654 3344455667778889999999999999998765 4445555
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..+.....+.|++++|...+++.++.. |+...|..++.++.+.|++++|+..++++++.. |.+...+..++.++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 555555566799999999999999864 467788999999999999999999999999986 66778889999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 553 NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 553 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|++++|+..++++++..+. ++..+..++.++...|++++|+..+++.+
T Consensus 657 G~~eeAi~~l~~AL~l~P~--~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPD--DPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999987765 88999999999999999999999999864
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-26 Score=250.34 Aligned_cols=503 Identities=14% Similarity=0.061 Sum_probs=366.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhh----------
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVT---------- 153 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---------- 153 (603)
....++.....++.+.|.+.+.++.... +.++.++..++..+...|+.++|.+.++++.+..+. +...
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhc
Confidence 5566777888999999999999999876 668889999999999999999999999999998654 2222
Q ss_pred ------HHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhh
Q 037409 154 ------FNFLINGLCAEGRIMEAARLFKKLNVFACDPNVV-TFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVT 226 (603)
Q Consensus 154 ------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (603)
...+...+.+.|++++|.+.|+++.... +|+.. ............|+.++|++.++++.+. .|.+...
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~----~P~~~~~ 183 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD----YPGNTGL 183 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh----CCCCHHH
Confidence 2334557888999999999999998763 34432 1112222233469999999999999997 3567778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCC------------------C--------------CChhhH------------
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMKDRNI------------------N--------------PNVITY------------ 262 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~------------ 262 (603)
+..+...+...|+.++|++.++++..... . |+....
T Consensus 184 ~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~ 263 (1157)
T PRK11447 184 RNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQK 263 (1157)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHH
Confidence 88999999999999999999998754310 0 110000
Q ss_pred ---------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhH
Q 037409 263 ---------NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDT-VTY 332 (603)
Q Consensus 263 ---------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 332 (603)
......+...|++++|+..|++.++.. +.+...+..+..++.+.|++++|...|++..+....... ..+
T Consensus 264 ~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~ 342 (1157)
T PRK11447 264 QLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKW 342 (1157)
T ss_pred hccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHH
Confidence 012345667899999999999998874 447888999999999999999999999999876543211 111
Q ss_pred ------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh
Q 037409 333 ------------NSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI 400 (603)
Q Consensus 333 ------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 400 (603)
......+.+.|++++|++.|+++++.. +.+...+..+..++...|++++|++.|+++++.... +..
T Consensus 343 ~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~ 420 (1157)
T PRK11447 343 ESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTN 420 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH
Confidence 122456778999999999999999874 335567778889999999999999999999876332 233
Q ss_pred hHHHHH------------------------------------------HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHH
Q 037409 401 TYNTLL------------------------------------------SGLFQVGNLGDALKLIDKMQLNDVVPDSFTFA 438 (603)
Q Consensus 401 ~~~~l~------------------------------------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (603)
.+..+. ..+...|++++|++.+++..+..+. +...+.
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~ 499 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTY 499 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 333222 2344567788888888887765433 455666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh---------------------
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH--------------------- 497 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------- 497 (603)
.+...|.+.|++++|...++++.+.. +.++..+..+...+...++.++|...++.+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 77777888888888888888877644 33444444333334444444444444433211
Q ss_pred -------------------CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 498 -------------------KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 498 -------------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
..+ ++...+..+...+.+.|++++|+..|+++++.. |.+...+..++..+...|++++|
T Consensus 579 ~a~~l~~~G~~~eA~~~l~~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLRQQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 111 244456677778888888888888888888875 55677888888888888999999
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.++++.+..+. ++.....++.++.+.|++++|.+++++++
T Consensus 657 ~~~l~~ll~~~p~--~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 657 RAQLAKLPATAND--SLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHhccCCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9888888765443 66777788888888899999988888764
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=5.6e-25 Score=213.22 Aligned_cols=545 Identities=14% Similarity=0.080 Sum_probs=417.8
Q ss_pred CchhHHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 037409 43 DGTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLL 122 (603)
Q Consensus 43 ~~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 122 (603)
++..+.-+..+++....++|..|+.+|..++...|..-+.....+...+++.|+.+.|+..|.++++.+ |.++.++..|
T Consensus 161 p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L 239 (1018)
T KOG2002|consen 161 PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVAL 239 (1018)
T ss_pred CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHH
Confidence 344444567777888899999999999999888776555555666777889999999999999999886 4445555444
Q ss_pred HHHHHh---cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC--CcHHHHHHHHHHHH
Q 037409 123 INCLCK---MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACD--PNVVTFNTLINGLC 197 (603)
Q Consensus 123 ~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 197 (603)
...-.. ...+..+.+++.+....... |+.+.+.|...|.-.|++..++.+...+...... .-..+|..+.++|.
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~-nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNE-NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCC-CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 433322 23466788888888777544 8889999999999999999999999988764311 12345888999999
Q ss_pred hcCChHHHHHHHHHHHHhcCCccCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---
Q 037409 198 RTRNTLVALKLFEEMVNEFGAICKPD-VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD--- 273 (603)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 273 (603)
..|++++|..+|.+..... +.+ +..+..+...+.+.|+++.+...|+.+.+. .+-+..+...|...|...+
T Consensus 319 a~Gd~ekA~~yY~~s~k~~----~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~ 393 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKAD----NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQ 393 (1018)
T ss_pred hhccHHHHHHHHHHHHccC----CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhh
Confidence 9999999999999999864 222 445567889999999999999999999886 3446778888888887775
Q ss_pred -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037409 274 -DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMI----QRGVNPDTVTYNSLMDGFCLVGRISRA 348 (603)
Q Consensus 274 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (603)
..+.|..++.+....- +.|...|-.+...+....-+.. +..|..+. ..+..+.+...|.+...+...|+++.|
T Consensus 394 ~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 394 EKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred HHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 5577888888877664 5577788888777766554443 66665443 445557788899999999999999999
Q ss_pred HHHHHHHHHc---CCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHH
Q 037409 349 RELFVSMVSK---GCRHDV------YSYNILINANCKDQKVEDAVCLYREMLSERIRPS-VITYNTLLSGLFQVGNLGDA 418 (603)
Q Consensus 349 ~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a 418 (603)
...|...... ...++. .+-..+...+-..++.+.|.++|..++... |+ +..|.-++......+...+|
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHH
Confidence 9999998775 122232 123345666777889999999999998862 33 23344443333445788899
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHh------------CCCh
Q 037409 419 LKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC-KCELRIETYNCLINGLCK------------MGRL 485 (603)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~ 485 (603)
...++.....+ ..++..+..+...+.....+..|.+-|+.+.+. ...+|+.+...|++.|.+ .+..
T Consensus 550 ~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 550 SLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHH
Confidence 99999887653 335666767777888888888888877776653 224677777777776643 2457
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
++|+.+|.+.++.+|. |...-|.++-+++..|++.+|..+|.+..+.. .....+|..++.+|...|+|..|+++|+..
T Consensus 629 ~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999998777 88888999999999999999999999999875 456778999999999999999999999998
Q ss_pred HHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 566 AAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.+.-....+.++...|+.++.+.|++.+|.+++.+.
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a 742 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA 742 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 866554478999999999999999999999887654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4e-23 Score=214.68 Aligned_cols=521 Identities=10% Similarity=0.004 Sum_probs=370.4
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC---- 125 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---- 125 (603)
+..++.....|++++|+..+++++..+|. |...+..+... +++++|..+++++.... |.+..++..+...
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~La~i----~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~ 155 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSLAAI----PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQ 155 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHh----ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhcc
Confidence 44444555689999999999999998774 66655555322 88999999999999875 5556666666665
Q ss_pred ----HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH-HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-c
Q 037409 126 ----LCKMGITSGAFVVLGRILRSCFTPNTVTFNFL-INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-T 199 (603)
Q Consensus 126 ----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 199 (603)
|.+. ++|...++ .....+.|+..+.... ...|.+.|++++|+.++.++.+.+ +.+......+..+|.. .
T Consensus 156 ~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 156 NALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred chhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Confidence 5544 45555554 3333334444444444 788888999999999999888875 3344556666667776 3
Q ss_pred CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCC-CChhhH----------------
Q 037409 200 RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNIN-PNVITY---------------- 262 (603)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~---------------- 262 (603)
++ +++..+++.. .+.+...+..++..|.+.|+.++|.++++++...-.. |...+|
T Consensus 231 ~~-~~a~al~~~~-------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~ 302 (987)
T PRK09782 231 LD-DRLLALQSQG-------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALA 302 (987)
T ss_pred CH-HHHHHHhchh-------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhcc
Confidence 55 6666664431 3356777778888888888888888777776443111 111111
Q ss_pred --------------HHHHHH------------------------------------------------------------
Q 037409 263 --------------NSLICG------------------------------------------------------------ 268 (603)
Q Consensus 263 --------------~~l~~~------------------------------------------------------------ 268 (603)
..++..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~ 382 (987)
T PRK09782 303 NYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQL 382 (987)
T ss_pred chhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHH
Confidence 000111
Q ss_pred ---HHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HH
Q 037409 269 ---FCCVDDWKEAKCLFIEMMDN-G-VQPDVVTFNAMINYNCKDGK---MDKVNRL----------------------LE 318 (603)
Q Consensus 269 ---~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~----------------------~~ 318 (603)
..+.|+.++|..+|+..... + -.++......++..|.+.+. ..++..+ ++
T Consensus 383 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 462 (987)
T PRK09782 383 TWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCP 462 (987)
T ss_pred HHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHH
Confidence 22345555566666555442 1 12234455577788877765 3333222 11
Q ss_pred HHHHC-CC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037409 319 LMIQR-GV-NP--DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER 394 (603)
Q Consensus 319 ~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 394 (603)
..... +. ++ +...+..+..++.. ++.++|...+.+.... .|+......+...+...|++++|...|+++...
T Consensus 463 ~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~- 538 (987)
T PRK09782 463 AIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH- 538 (987)
T ss_pred HHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 11111 11 23 55677777777766 8888999988888876 355443334455557899999999999998664
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 037409 395 IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNC 474 (603)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (603)
+|+...+..+...+.+.|++++|...+++..+..+. ....+..+...+...|++++|...+++..+.. |+...+..
T Consensus 539 -~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~ 614 (987)
T PRK09782 539 -DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVA 614 (987)
T ss_pred -CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 344455667778889999999999999999876422 33334344445556799999999999999765 46889999
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
+..++.+.|++++|+..+++..+..|. +...++.++.++...|++++|+..++++++.. |.+...+..++.++...|+
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd 692 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDD 692 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 999999999999999999999998776 78889999999999999999999999999975 5678889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 555 KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 555 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+++|+..++++++..+. ...+....++...+..+++.|.+-+++-
T Consensus 693 ~~eA~~~l~~Al~l~P~--~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 693 MAATQHYARLVIDDIDN--QALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHHHhcCCC--CchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987654 7788888999999999999999887764
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1e-24 Score=200.87 Aligned_cols=384 Identities=13% Similarity=0.067 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh-HHH
Q 037409 186 VVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT-YNS 264 (603)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 264 (603)
..+|..+.+.+-..|+++.|+..++.+++. .+..+..|..+..++...|+.+.|.+.|.+..+. .|+... .+.
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel----~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL----KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc----CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 344444555555555555555555555543 1333444555555555555555555555544443 222111 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
+.......|++++|...|.+.++.. +--...|..|...+..+|+...|+..|++..+..+. -...|..|...|...+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARI 267 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhc
Confidence 2233333455555555554444431 111234555555555555555555555555544211 12345555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 345 ISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (603)
+++|...|.+..... +.....+..+...|...|..+-|+..+++.++..+. =...|+.+..++-..|+..+|...+.+
T Consensus 268 ~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred chHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 555555555555442 112344444555555556666666666655554221 234556666666666666666666665
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC-
Q 037409 425 MQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD- 503 (603)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 503 (603)
....... .....+.|..++...|.+++|..+|....... +.-....+.|...|.++|++++|+..+++.+.. .|+
T Consensus 346 aL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~f 421 (966)
T KOG4626|consen 346 ALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTF 421 (966)
T ss_pred HHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchH
Confidence 5543221 33445556666666666666666666555433 333455566666666666666666666666653 333
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVD 583 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 583 (603)
...|+.++..|-..|+.+.|++.+.+++..+ +.=...+..|+..|-.+|+..+|+.-|+.+++..++ -++.+..++.
T Consensus 422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD--fpdA~cNllh 498 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD--FPDAYCNLLH 498 (966)
T ss_pred HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC--CchhhhHHHH
Confidence 4456666666666666666666666666543 222445566666666666666666666666654443 3344444444
Q ss_pred HHH
Q 037409 584 LLS 586 (603)
Q Consensus 584 ~~~ 586 (603)
++.
T Consensus 499 ~lq 501 (966)
T KOG4626|consen 499 CLQ 501 (966)
T ss_pred HHH
Confidence 443
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=1e-24 Score=200.95 Aligned_cols=437 Identities=15% Similarity=0.085 Sum_probs=293.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++.+|.+.-..+-+.+|. +....-.+...+.+..+++.....-....+.. +.-.++|+.+.+.+-..|++++|+.
T Consensus 60 q~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~ 137 (966)
T KOG4626|consen 60 QGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALA 137 (966)
T ss_pred hccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHH
Confidence 356777777777766666554 34444455556666666666666555555443 4456677777777777788888888
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVT-FNTLINGLCRTRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (603)
.++.+++..++ .+..|..+..++...|+.+.|.+.|.+..+. .|+... .+.+...+-..|+.++|...|.+.++.
T Consensus 138 ~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~- 213 (966)
T KOG4626|consen 138 LYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET- 213 (966)
T ss_pred HHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhh-
Confidence 88777776543 6677777777777778877787777777665 454443 334555555677777777777777775
Q ss_pred CCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 037409 217 GAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN-VITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVV 295 (603)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 295 (603)
.+--...|+.|...+-..|+...|+.-|++..+. .|+ ...|..|...|...+.+++|+..|.+..... +....
T Consensus 214 ---qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 214 ---QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred ---CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 2334566777777777777777777777777765 232 4567777777777777777777777776653 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 037409 296 TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANC 375 (603)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (603)
.+..+...|-.+|.++.|+..+++.++..+. =+..|+.|..++-..|+..+|...|.+.+... +......+.|...|.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 6666777777777777777777777765322 34567777777777777777777777777653 224456677777777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHhHHHHHHHHHhCCCHHHHH
Q 037409 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD-SFTFATYIDGLCKNGFVLEAV 454 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 454 (603)
..|.++.|..+|....+..+. -...++.|...|-++|++++|+..+++.+. +.|+ ...++.+...|-..|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 777777777777777664211 245567777777777777777777777765 3443 346666777777777777777
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 455 QVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
+.+.+.+..+ |.-.+.++.|...|...|++.+|+.-++..++..+. -+..+..++.+
T Consensus 443 q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD-fpdA~cNllh~ 499 (966)
T KOG4626|consen 443 QCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD-FPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC-CchhhhHHHHH
Confidence 7777776554 444567777777777777777777777777775443 23344444444
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=8.9e-23 Score=198.15 Aligned_cols=511 Identities=14% Similarity=0.102 Sum_probs=396.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK---QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGA 135 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 135 (603)
.|+.+.|+..|.++++.+|. ++.++..|...-.... .+..++..+.++-... +.++.+.+.|.+.+.-.|+++.+
T Consensus 212 l~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v 289 (1018)
T KOG2002|consen 212 LGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERV 289 (1018)
T ss_pred ccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHH
Confidence 47888999999999999884 6776666665544444 4666777777776655 67888999999999999999999
Q ss_pred HHHHHHHHHCCCCC--CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH--HHHHHHHHHHHhcCChHHHHHHHHH
Q 037409 136 FVVLGRILRSCFTP--NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV--VTFNTLINGLCRTRNTLVALKLFEE 211 (603)
Q Consensus 136 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (603)
..+...++...... -...|-.+.++|-..|++++|...|.+..+. .++. ..+..+++.+...|+.+.+...|+.
T Consensus 290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 99999998864221 2335778999999999999999999998876 4444 4456788999999999999999999
Q ss_pred HHHhcCCccCCChhhHHHHHHHHHhcC----ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 037409 212 MVNEFGAICKPDVVTYNSIIDGLCKDG----FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM- 286 (603)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 286 (603)
+... .|.+..+...+...|...+ ..+.|..++....+. .+.|...|..+...+...+-+.. +..|....
T Consensus 368 v~k~----~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 368 VLKQ----LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHh----CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 9997 4667778888888888775 456777777777665 35578888888888866655544 77776554
Q ss_pred ---HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 287 ---DNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQR---GVNPDT------VTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 287 ---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
..+-++.+...|.+...+...|++++|...|...... ...+|. .+-..+....-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3455678889999999999999999999999988765 122222 2334456666778899999999999
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCC
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN-DVVPD 433 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 433 (603)
+++.. +.-+..|-.++.+....+...+|...+++....+- .++..++.+...+.....+..|.+-|..+.+. ...+|
T Consensus 522 Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D 599 (1018)
T KOG2002|consen 522 ILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTD 599 (1018)
T ss_pred HHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCc
Confidence 99873 22334444454444456788999999999887633 36777888888888888888888877766543 23357
Q ss_pred HHhHHHHHHHHHh------------CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 434 SFTFATYIDGLCK------------NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 434 ~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
..+...|.+.|.. .+..++|+++|.++++.. |-|...-|.++-+++..|++.+|..+|.+..+....
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~ 678 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD 678 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh
Confidence 7777777776543 245788999999999876 778889999999999999999999999999986443
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSK 580 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 580 (603)
+..+|-.++++|..+|+|..|+++|+...+.-. ..+..+...|++++.+.|++.+|.+.+..+....+. ++.....
T Consensus 679 -~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~--~~~v~FN 755 (1018)
T KOG2002|consen 679 -FEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS--NTSVKFN 755 (1018)
T ss_pred -CCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc--cchHHhH
Confidence 567899999999999999999999999887633 346788999999999999999999999999987765 5444444
Q ss_pred HHHHH
Q 037409 581 VVDLL 585 (603)
Q Consensus 581 l~~~~ 585 (603)
++-.+
T Consensus 756 ~a~v~ 760 (1018)
T KOG2002|consen 756 LALVL 760 (1018)
T ss_pred HHHHH
Confidence 44433
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.94 E-value=5.3e-22 Score=203.31 Aligned_cols=256 Identities=14% Similarity=0.074 Sum_probs=154.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 037409 308 GKMDKVNRLLELMIQRG-VNP-DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVC 385 (603)
Q Consensus 308 ~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 385 (603)
+++++|...|+...+.+ ..| ....+..+...+...|++++|+..+++.++.. +.....|..+...+...|++++|+.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 56667777777666543 112 33445566666666777777777777766652 1223455566666666777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037409 386 LYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC 465 (603)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 465 (603)
.|+++++... .+...|..+...+...|++++|+..|++.....+. +...+..+...+.+.|++++|+..+++..+..
T Consensus 387 ~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~- 463 (615)
T TIGR00990 387 DFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF- 463 (615)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 7776665532 24556666666667777777777777766655322 44555556666666777777777777666543
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHh------HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVV------TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
+.+...++.+..++...|++++|...|++..+..+..+.. .++..+..+...|++++|+++++++++.+ +.+.
T Consensus 464 P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~ 542 (615)
T TIGR00990 464 PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECD 542 (615)
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence 4456666667777777777777777777766653321111 11111122233567777777777766653 3344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 540 VTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
..+..++..+.+.|++++|++.++++.+.
T Consensus 543 ~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 543 IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45666677777777777777777776654
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.93 E-value=1.1e-20 Score=193.74 Aligned_cols=432 Identities=13% Similarity=0.060 Sum_probs=308.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (603)
.+...+..+.+.|++++|+..|++++.. .|++..+..+..+|...|++++|+..+..+++..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4567788889999999999999998876 467788888889999999999999999999887543 6678888899999
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhH
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK 242 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (603)
..|++++|+..|......+ ..+......++..... ..+........+. .+++...+..+.. +......+.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----~~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILET----KPENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhc----CCCCCCCHHHHHH-HHHHccCCc
Confidence 9999999998887765542 1121211222221111 2333334444443 2233333333333 222222222
Q ss_pred HHHHHHHHhhCCCCCC-hhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 243 AKELLLQMKDRNINPN-VITYNSLICGF---CCVDDWKEAKCLFIEMMDNG-V-QPDVVTFNAMINYNCKDGKMDKVNRL 316 (603)
Q Consensus 243 a~~~~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (603)
...-+....+. .+. ...+..+...+ ...+++++|.+.|+...+.+ . +.....+..+...+...|++++|...
T Consensus 276 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~ 353 (615)
T TIGR00990 276 RPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALAD 353 (615)
T ss_pred chhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22222221111 111 11111111111 23478999999999998764 2 23455678888888999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037409 317 LELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIR 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 396 (603)
+++.++..+. ....|..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|+..|++.+...+
T Consensus 354 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P- 430 (615)
T TIGR00990 354 LSKSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP- 430 (615)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence 9999877432 45678888888999999999999999998874 34567888899999999999999999999988643
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChH------
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE------ 470 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------ 470 (603)
.+...+..+...+.+.|++++|+..+++.....+ .+...+..+...+...|++++|...|++........+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 3567778888899999999999999999887543 357788889999999999999999999988754221111
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
.++..+..+...|++++|..++++..+.++. +...+..++..+...|++++|+++|+++.+..
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1222223344579999999999999887655 56678999999999999999999999998864
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=5.9e-22 Score=193.18 Aligned_cols=305 Identities=15% Similarity=0.122 Sum_probs=181.2
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD---LFVLNLLINCL 126 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~ 126 (603)
|..+......|++++|+..|.+++..+|. +..++..++..+.+.|++++|..+++.+...+..++ ...+..++..+
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 44455455567777777777777776553 556677777777777777777777777765431111 13455566666
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHhcCCh
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPN----VVTFNTLINGLCRTRNT 202 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 202 (603)
...|+++.|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++++.+.+..+. ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 66777777777777666542 23455666666666677777777777776665432211 11234455566666666
Q ss_pred HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 203 LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 282 (603)
++|...|+++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...+
T Consensus 197 ~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l 272 (389)
T PRK11788 197 DAARALLKKALAAD----PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL 272 (389)
T ss_pred HHHHHHHHHHHhHC----cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66766666666542 33445555666666666666666666666665432222344566666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 037409 283 IEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL---VGRISRARELFVSMVSKG 359 (603)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~ 359 (603)
+++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.+
T Consensus 273 ~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 273 RRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 666654 244444455666666666666666666666554 3455555555554443 335666666666666554
Q ss_pred CCCCc
Q 037409 360 CRHDV 364 (603)
Q Consensus 360 ~~~~~ 364 (603)
+.+++
T Consensus 349 ~~~~p 353 (389)
T PRK11788 349 LKRKP 353 (389)
T ss_pred HhCCC
Confidence 44444
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=7.7e-20 Score=190.68 Aligned_cols=415 Identities=11% Similarity=-0.029 Sum_probs=232.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH
Q 037409 113 FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTL 192 (603)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 192 (603)
+.++......+.+....|+.++|++++.+..... +.+...+..+...+.+.|++++|..++++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4455556666666667777777777776666532 2344456666667777777777777777766542 3344556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 193 INGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
+..+...|++++|+..++++.+. .|.+.. +..+...+...|+.++|+..++++.+... .+...+..+...+...
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHC
Confidence 66666777777777777777665 244445 66666666677777777777777666522 2444455556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVV------TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRI- 345 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 345 (603)
+..++|+..++.... .|+.. ....++......+ ....+++
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~ 210 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYA 210 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHH
Confidence 666666666655442 12200 0000111110000 0111112
Q ss_pred --HHHHHHHHHHHHc-CCCCCcc-hHH----HHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHhcCCHH
Q 037409 346 --SRARELFVSMVSK-GCRHDVY-SYN----ILINANCKDQKVEDAVCLYREMLSERIR-PSVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 346 --~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 416 (603)
++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+++...+.+ |+. ....+...|...|+++
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcH
Confidence 4455555555543 1111111 110 0022334456666666666666554321 221 1122344566666666
Q ss_pred HHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----------CCC---hHHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVP---DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC-----------ELR---IETYNCLINGL 479 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~ 479 (603)
+|+..|+++....... .......+..++...|++++|.++++.+..... .|+ ...+..++..+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 6666666655432111 122333444455666666666666666654321 112 22445566667
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
...|++++|+.+++++....|. +...+..++..+...|++++|++.++++++.. |.+...+...+..+...|++++|.
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~ 447 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMD 447 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHH
Confidence 7777777777777777776555 56677777777777777777777777777754 444556666666777777777777
Q ss_pred HHHHHHHHCCCC
Q 037409 560 VLLHKMAAEKLV 571 (603)
Q Consensus 560 ~~~~~~~~~~~~ 571 (603)
..++++++..+.
T Consensus 448 ~~~~~ll~~~Pd 459 (765)
T PRK10049 448 VLTDDVVAREPQ 459 (765)
T ss_pred HHHHHHHHhCCC
Confidence 777777765544
No 21
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2.4e-19 Score=182.93 Aligned_cols=465 Identities=13% Similarity=0.053 Sum_probs=284.4
Q ss_pred HHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037409 48 AKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 48 ~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (603)
..|.++.+....|+++.|+..|++++..+|......+ .++..+...|+.++|+..++++... .+........++..+.
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 3577777888899999999999999998876333344 7888888999999999999999821 1333444444567889
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALK 207 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (603)
..|++++|+++++++.+..+. +..++..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999998766 5777788889999999999999999999876 6666666555555555677767999
Q ss_pred HHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
.++++.+. .|.+...+..+..++.+.|-...|.++..+-... +.+....+ | . .+.|.+..+.
T Consensus 191 ~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l-~-------~~~~a~~vr~--- 252 (822)
T PRK14574 191 ASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L-E-------RDAAAEQVRM--- 252 (822)
T ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H-H-------HHHHHHHHhh---
Confidence 99999997 3567788888999999999999999887765432 11111111 0 0 0011111100
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH-h----hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037409 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQR-GVNPDT-V----TYNSLMDGFCLVGRISRARELFVSMVSKGCR 361 (603)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~-~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (603)
+..++..- . . +---.+.|..-++.+... +..|.. . ...-.+-++...+++.++++.|+.+...+.+
T Consensus 253 -a~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 253 -AVLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred -cccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 00000000 0 0 000112222222332221 000110 0 1112222344444555555555555444433
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-------
Q 037409 362 HDVYSYNILINANCKDQKVEDAVCLYREMLSER-----IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLND------- 429 (603)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 429 (603)
....+-..+.++|...+++++|..+|+.+.... .+++......|.-++...+++++|..+++.+.+..
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 333344444455555555555555555543321 11122223445555555555555555555554421
Q ss_pred ------CCCCH-HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC
Q 037409 430 ------VVPDS-FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP 502 (603)
Q Consensus 430 ------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 502 (603)
+.||- .....++..+...|++.+|++.++++.... |-|......+...+...|.+.+|+..++.+....+.
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~- 482 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR- 482 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-
Confidence 12222 223344556677788888888888776655 667777778888888888888888888766665444
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+..+....+.++...|++++|..+.+.+.+.. |+......|-+
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~l~r 525 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQELDR 525 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHHHHH
Confidence 56666677777777788888888877777753 44444444433
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.92 E-value=3.2e-20 Score=193.54 Aligned_cols=421 Identities=12% Similarity=0.012 Sum_probs=275.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGL 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (603)
....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|..+++++++..+. +...+..++..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 333445667788999999999999998643 566777999999999999999999999999987543 577788899999
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+. .|.+...+..+...+...|..+
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChH
Confidence 99999999999999998873 44556 888899999999999999999999997 3556777777888888999999
Q ss_pred HHHHHHHHHhhCCCCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HHHHHHHHHH
Q 037409 242 KAKELLLQMKDRNINPNV------ITYNSLICGFC-----CVDDW---KEAKCLFIEMMDN-GVQPDVV-TFNAMINYNC 305 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~~~-~~~~l~~~~~ 305 (603)
+|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+...
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a----- 239 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRA----- 239 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHH-----
Confidence 99999987664 2221 01111111111 11112 3444444444432 1111111 00000
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHH
Q 037409 306 KDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
....+..+...|++++|+..|+.+.+.+.+ |+ .....+...|...|++++|+
T Consensus 240 --------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~ 292 (765)
T PRK10049 240 --------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQ 292 (765)
T ss_pred --------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHH
Confidence 000011223334455555555554443211 11 11111334444555555555
Q ss_pred HHHHHHHhCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----------CCC---HHhHHHHHHHHHhC
Q 037409 385 CLYREMLSERIRP---SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV-----------VPD---SFTFATYIDGLCKN 447 (603)
Q Consensus 385 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~ 447 (603)
..|+++....... .......+..++...|++++|..+++.+....+ .|+ ...+..+...+...
T Consensus 293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~ 372 (765)
T PRK10049 293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS 372 (765)
T ss_pred HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence 5555544322110 012233334444555555555555555543311 223 22445667778888
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|++.++++.... |.+...+..++..+...|++++|+..++++.+..|. +...+...+..+...|++++|+.++
T Consensus 373 g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 373 NDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988765 667889999999999999999999999999987655 5667777888888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH
Q 037409 528 LDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 528 ~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+++++. .|+......+-+.+
T Consensus 451 ~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 451 DDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHh--CCCCHHHHHHHHHH
Confidence 999986 36555444444443
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=3.2e-20 Score=189.22 Aligned_cols=361 Identities=12% Similarity=0.013 Sum_probs=251.5
Q ss_pred HHhcCCHhHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcC
Q 037409 161 LCAEGRIMEAARLFKKLNVFA--CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDG 238 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (603)
+.+..+++.-.-+|....+.. -..+......++..+.+.|++++|..+++..+.. .+.+...+..++.+....|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~----~p~~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT----AKNGRDLLRRWVISPLASS 90 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh----CCCchhHHHHHhhhHhhcC
Confidence 345666666666666554321 0112223445566777788888888888888876 3455666666777777788
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 239 FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLE 318 (603)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (603)
++++|...++++.... +.+...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 8888888888887763 3356677777888888888888888888887753 3456677777888888888888888888
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 037409 319 LMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPS 398 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 398 (603)
.+....+. +...+..+ ..+...|++++|...++.+.+....++......+...+.+.|++++|+..++++..... .+
T Consensus 169 ~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~ 245 (656)
T PRK15174 169 TQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DG 245 (656)
T ss_pred HHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CC
Confidence 77665433 22233333 23677788888888888877664333334444556677788888888888888777643 35
Q ss_pred HhhHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHH
Q 037409 399 VITYNTLLSGLFQVGNLGD----ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNC 474 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 474 (603)
...+..+...+...|++++ |...+++.....+. +...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 6667777778888888775 67778877765433 56677777778888888888888888877765 556667777
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+..++.+.|++++|...++++.+.++. +...+..++.++...|++++|+..|+++++.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 788888888888888888888775443 2333444566777888888888888888775
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.92 E-value=1.7e-20 Score=191.26 Aligned_cols=368 Identities=10% Similarity=-0.012 Sum_probs=291.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (603)
..+.+..+++.-.-+|....+.... ...+..-...++..+.+.|++++|..+++........ +...+..++.+....|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g 90 (656)
T PRK15174 13 TTLLKQEDWEGLCLYFSQHPEKVRD-SAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASS 90 (656)
T ss_pred hhhhhhhchhhHhHHhhcccHhhhh-hcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcC
Confidence 4456667777766666666654211 1122334455677788999999999999999887433 5566667777788899
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
++++|...++++.... +.+...+..+...+...|++++|...++++.+..+. +...+..++..+...|++++|...++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9999999999999874 456778888889999999999999999999987433 56778888999999999999999999
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037409 354 SMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD 433 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (603)
.+...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|+..++++....+. +
T Consensus 169 ~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~ 245 (656)
T PRK15174 169 TQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G 245 (656)
T ss_pred HHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 88776422 23333333 347889999999999999887654445555566677888999999999999999876543 6
Q ss_pred HHhHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLE----AVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST 509 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 509 (603)
...+..+...+...|++++ |...++++.+.. |.+...+..++..+.+.|++++|...+++..+..+. +...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHH
Confidence 7777888999999999986 899999998865 667889999999999999999999999999997666 6777888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
++.++...|++++|+..++++.+.+ +.+...+..++.++...|++++|...++++.+..+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 9999999999999999999999864 233344555678899999999999999999987655
No 25
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=3.8e-21 Score=187.49 Aligned_cols=301 Identities=14% Similarity=0.079 Sum_probs=168.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC---HhhHHHHHHHHH
Q 037409 86 ILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPN---TVTFNFLINGLC 162 (603)
Q Consensus 86 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 162 (603)
..+..+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+......++ ...+..++..|.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33445566777777888888777764 44555677777777777777777777777766432211 234566667777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC---hhhHHHHHHHHHhcCC
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD---VVTYNSIIDGLCKDGF 239 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 239 (603)
+.|++++|..+|+++.+.. +++..++..++..+...|++++|++.++.+.+.... ++. ...+..++..+.+.|+
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--SLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHhCCC
Confidence 7777777777777776542 345566667777777777777777777776654310 000 1123345555556666
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLEL 319 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (603)
+++|...|+++.+.. +.+...+..++..+.+.|++++|.++++++...+......++..++.+|.+.|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665542 2234455555556666666666666666655442111123445555555555555555555555
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCC
Q 037409 320 MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK---DQKVEDAVCLYREMLSERI 395 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~ 395 (603)
+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.+++++.+.++
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 55442 23333344555555555555555555555444 3444444444444332 2345555555555554433
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=1.3e-18 Score=177.66 Aligned_cols=458 Identities=14% Similarity=0.026 Sum_probs=297.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
+.+...-+....++|+++.|+..|+++++.. |.+......++..+...|+.++|+..+++.... ..........++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 4444444555667777777777777777664 222222226666677777777777777777621 11123333333556
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++.... |+...+..++..+...++.
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-----p~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD-----PTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-----cchHHHHHHHHHHHhcchH
Confidence 667777777777777777653 3344555666667777777777777777776642 3444443333333334555
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320 (603)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (603)
.+|++.++++.+.. +.+...+..+.....+.|-...|.++.++- |+..+-..... =+.+.+.+..+..
T Consensus 186 ~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~vr~a 253 (822)
T PRK14574 186 YDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHHhhc
Confidence 45777777777653 225555666666666666666666555442 22111110000 0011111111111
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-cchH----HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 037409 321 IQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK-GCRHD-VYSY----NILINANCKDQKVEDAVCLYREMLSER 394 (603)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~ 394 (603)
..++.. - -. +.--.+.|+.-++.+... +..|. ...| .-.+-++...+++.++++.|+.+...+
T Consensus 254 ----~~~~~~-~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 254 ----VLPTRS-E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred ----cccccc-c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 111000 0 00 001235566666666653 11122 1222 234556788999999999999999887
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Q 037409 395 IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV-----VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---- 465 (603)
Q Consensus 395 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---- 465 (603)
.+....+-..+.++|...+++++|+.+++.+..... .++......|.-++...+++++|..+++.+.+...
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 665666888999999999999999999999865431 22333356788899999999999999999987321
Q ss_pred -------CCC---hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 466 -------ELR---IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 466 -------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.|+ ...+..++..+...|++.+|++.++++....|. |...+..+...+...|.+.+|++.++.+....
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~- 480 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA- 480 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-
Confidence 122 234455677788999999999999999998777 99999999999999999999999998888764
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.+..+....+.++...|++++|..+.+.+.+..+.
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRSPE 516 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCC
Confidence 556777888999999999999999999999987765
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=1.4e-17 Score=161.43 Aligned_cols=545 Identities=12% Similarity=0.062 Sum_probs=362.7
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG 130 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 130 (603)
-.+......|++++|..++.+++..+|. +...|..|...|-+.|+.+++...+-.+.... +.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 3444455569999999999999999876 78899999999999999999999888887765 678889999999999999
Q ss_pred CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHhcCChHHHH
Q 037409 131 ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTF----NTLINGLCRTRNTLVAL 206 (603)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~ 206 (603)
++++|.-.|.++++..+. +....---+..|-+.|+...|...|.++.....+.|..-. -..+..+...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999998654 4444444567788999999999999999886321122222 23456677788889999
Q ss_pred HHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH------------------------
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITY------------------------ 262 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------------------ 262 (603)
+.++....... ...+...++.++..+.+...++.+......+..+...+|..-|
T Consensus 301 ~~le~~~s~~~--~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l 378 (895)
T KOG2076|consen 301 KALEGALSKEK--DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL 378 (895)
T ss_pred HHHHHHHhhcc--ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence 99999987432 3455667889999999999999999888777663222222111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 263 --NSLICGFCCVDDWKEAKCLFIEMMDNG--VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDG 338 (603)
Q Consensus 263 --~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
..+.-++...+..+....+...+.+.. +.-+...|.-+..++.+.|++.+|..+|..+......-+...|..+..+
T Consensus 379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 122233334444444444444444444 3334567788888899999999999999988877655567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHhhHHHHHHHHH
Q 037409 339 FCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE--------RIRPSVITYNTLLSGLF 410 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~ 410 (603)
|...|..+.|.+.|..++... +.+...-..|...+.+.|+.++|.+.+..+... +..|+..........+.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHH
Confidence 999999999999999888763 234455566777788899999999888875432 12233333333444555
Q ss_pred hcCCHHHHHHHHHHHhhCC-----C---------------------------------------------CC--------
Q 037409 411 QVGNLGDALKLIDKMQLND-----V---------------------------------------------VP-------- 432 (603)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~-----~---------------------------------------------~~-------- 432 (603)
+.|+.++-+.....|.... + .+
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 6666554333222221100 0 00
Q ss_pred -----C--HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCh---HHHHHHHHHHHhCCChhHHHHHHHHHhhC-C
Q 037409 433 -----D--SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRI---ETYNCLINGLCKMGRLKTACKLFHRLQHK-G 499 (603)
Q Consensus 433 -----~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 499 (603)
+ ...+..++..+++.+++++|+.+...+..... .++. ..-...+.+....+++..|...++.+... +
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 0 01234455677788888888888877765321 2221 23344555667788888888888877764 1
Q ss_pred C--CC-CHhHHHHHHH-----------------------------------HHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 037409 500 P--IP-DVVTCSTMIH-----------------------------------WLCKEGQMDKANDLLLDMEAKNCVPSEVT 541 (603)
Q Consensus 500 ~--~p-~~~~~~~l~~-----------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 541 (603)
. .| -...|+.... -+...+.+.-|+..+-++...+ |.++.+
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~Pl~ 776 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDSPLI 776 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCCcHH
Confidence 0 11 1223332111 1223456667777766666654 223433
Q ss_pred HHHHHHHHHh----------cCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 542 FCTLLRGFVQ----------NNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 542 ~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
-..++.++.. .-..-++..++++..+........+++..++++|...|-..-|..+|++.|
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL 847 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL 847 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 3333333321 112355666776666533221256888999999999999999999999987
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.5e-16 Score=148.44 Aligned_cols=508 Identities=10% Similarity=0.007 Sum_probs=358.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 037409 65 AVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 65 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 144 (603)
-.++++++++..|. ++..|...+ ...+.++|+.++.++++.- +.+.. +..+|.+...|+.|..++....+
T Consensus 365 K~RVlRKALe~iP~-sv~LWKaAV----elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 365 KKRVLRKALEHIPR-SVRLWKAAV----ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHHhCCc-hHHHHHHHH----hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455555555443 444444322 3344555666666666542 22322 23345555666777777777666
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH----HHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCcc
Q 037409 145 SCFTPNTVTFNFLINGLCAEGRIMEAARLFKK----LNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAIC 220 (603)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 220 (603)
. ++.+..+|.+-...--.+|+.+...+++++ +...|+.-+...|..=...+-..|..-.+..+....+..+-. .
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE-e 512 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE-E 512 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc-c
Confidence 5 333666666666655667777777666655 334566666677777677777777777777777766655411 1
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 221 KPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 221 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
..-..+|..-...|.+.+.++-|..+|....+. ++.+...|......--..|..++-..+|++.... ++.....|...
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ 590 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMY 590 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHH
Confidence 223456777778888888888888888887765 3446677777777767778888888888888876 34455667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
...+-..|++..|..++.++.+..+. +...|..-+..-....+++.|..+|.+.... .++..+|..-+..---.++.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 77778888999998888888877543 6677777777778888889999888888775 45677777666666677888
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
++|++++++.++. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. ++.....|..+...--+.|.+-+|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 8999888888775 2223456777778888888888888888776553 2224445666666666778888899888888
Q ss_pred HHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 461 RNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 461 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
.-.+ |.+...|...|++-.+.|+.+.|..+..++++.-+. +...|..-|+...+.++-......+++. .-|++
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence 7655 668888888888888999999998888888886444 6677777777777766655554444433 46777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++..++..+....++++|.++|++.++.+++ ..++|.-+...+.+.|.-++-.+++++
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d--~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPD--NGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--cchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8888888999999999999999999987765 677888888888999987777777765
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1e-18 Score=155.87 Aligned_cols=490 Identities=14% Similarity=0.067 Sum_probs=337.8
Q ss_pred hhhhhccCCCHHHHHHHHHHHH-----------hCCC------CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMI-----------KMKP------SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFP 114 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~-----------~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 114 (603)
..+++..+|++.+|+.--..+- +.+. .-.-.+...+.+.|..+....+|+..|+-.++....|
T Consensus 155 es~ian~~~~~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~ 234 (840)
T KOG2003|consen 155 ESCIANECGDFKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFP 234 (840)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccC
Confidence 3446667888888776544331 1110 0112334566777888888999999999999887777
Q ss_pred CHHHHH-HHHHHHHhcCCcchHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHH
Q 037409 115 DLFVLN-LLINCLCKMGITSGAFVVLGRILRSCFTPNT----VTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTF 189 (603)
Q Consensus 115 ~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 189 (603)
+...+. .+.+.+.+..++..|++.++..+..-+..+. ...+.+...+.+.|++++|+..|+...+. .|+..+-
T Consensus 235 nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~ 312 (840)
T KOG2003|consen 235 NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAA 312 (840)
T ss_pred CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhh
Confidence 765443 3567888999999999999888776443333 34555566788999999999999998876 7888887
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCc---------cCCChhhHHHHH-----HHHHhcCC--hhHHHHHHHHHhhC
Q 037409 190 NTLINGLCRTRNTLVALKLFEEMVNEFGAI---------CKPDVVTYNSII-----DGLCKDGF--VDKAKELLLQMKDR 253 (603)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~~~~~~~~~~l~-----~~~~~~g~--~~~a~~~~~~~~~~ 253 (603)
..|+-++...|+.++..+.|.+++...+.. ..|+....+..+ .-+.+.+. .++++-.--.+..-
T Consensus 313 ~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap 392 (840)
T KOG2003|consen 313 LNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP 392 (840)
T ss_pred hhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 777777778899999999999998754210 112222222222 22222211 12222221222221
Q ss_pred CCCCChh-------------hH--------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCH
Q 037409 254 NINPNVI-------------TY--------NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNC-K-DGKM 310 (603)
Q Consensus 254 ~~~~~~~-------------~~--------~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~ 310 (603)
-+.|+.. .+ ..-..-|.++|+++.|+++++-+.+..-+.....-+.|-..+. + -.++
T Consensus 393 vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~ 472 (840)
T KOG2003|consen 393 VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDF 472 (840)
T ss_pred ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccch
Confidence 1222211 00 0112346788999999999988876543322223333332222 2 3467
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHH---HHHHhcCChHHHHHHH
Q 037409 311 DKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILI---NANCKDQKVEDAVCLY 387 (603)
Q Consensus 311 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~ 387 (603)
..|.++-+..+... ..++.....-.+.....|++++|.+.|.+.+.. |.....+|. -.+-..|++++|++.|
T Consensus 473 ~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f 547 (840)
T KOG2003|consen 473 ADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCF 547 (840)
T ss_pred hHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHH
Confidence 77877777766442 223333333334445679999999999999876 444333333 3467789999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037409 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL 467 (603)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (603)
-++... ...+......+...|....+..+|++++-+.... ++.|+..+..|...|-+.|+-..|.+.+-+--+ .+|.
T Consensus 548 ~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~ 624 (840)
T KOG2003|consen 548 LKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPC 624 (840)
T ss_pred HHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCc
Confidence 876543 2236777778888899999999999999887765 455888999999999999999999888766554 3488
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH-HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL-CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
+.++...|...|....-+++++.+|++..- ++|+..-|..++..| .+.|++++|.+++++.-.+ ++.|..++..|+
T Consensus 625 nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflv 701 (840)
T KOG2003|consen 625 NIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLV 701 (840)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHH
Confidence 999999999999999999999999998876 678999999887765 5689999999999998876 588999999999
Q ss_pred HHHHhcCC
Q 037409 547 RGFVQNNK 554 (603)
Q Consensus 547 ~~~~~~g~ 554 (603)
+.+...|.
T Consensus 702 ri~~dlgl 709 (840)
T KOG2003|consen 702 RIAGDLGL 709 (840)
T ss_pred HHhccccc
Confidence 99887774
No 30
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=8.7e-16 Score=138.14 Aligned_cols=470 Identities=13% Similarity=0.112 Sum_probs=312.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+...|...+.-=..++++..|.++|++++..+ ..+...|...+.+-.+......|+.++++++..-+..|. .|...+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 45566666666666777888888888887655 455666767777777778888888888887776443332 3444444
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
+--..|++..|.++|++.... .|+..+|.+.++.-.+-++.+.|..+|+..+- +.|++.+|.-....-.+.|.
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-----~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-----VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----ecccHHHHHHHHHHHHhcCc
Confidence 445567888888888887765 78888888888888888888888888888775 45778788777777778888
Q ss_pred hhHHHHHHHHHhhC-CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 037409 240 VDKAKELLLQMKDR-NI-NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD--VVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 240 ~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
...+..+|+...+. |- ..+...+.++...-.++..++.|.-+|+-.++. ++.+ ...|..+...--+-|+......
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 88888888776653 10 112234444444445667777787777777765 2222 3344444443334454333222
Q ss_pred --------HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--chHHHHHHH--------HHhc
Q 037409 316 --------LLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV--YSYNILINA--------NCKD 377 (603)
Q Consensus 316 --------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~ 377 (603)
-++.+++.+ +.|-.+|-..+..-...|+.+...++|+.++..- +|-. ..|...|.. -...
T Consensus 302 ~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234444443 3366677777777777888888888888887652 3311 122222211 1236
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHH----HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSG----LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
.+.+.+.++|+..++. ++....||..+--. -.++.+...|.+++...+ |..|...+|...|..-.+.++++..
T Consensus 380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHH
Confidence 7788888888887774 44445555444333 346778888888887765 4567777888888888888888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG-PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
..++++.+..+ |.+..+|......-...|+.+.|..+|+-+++.. .......|...|..-...|.++.|..+++++++
T Consensus 457 RkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 457 RKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 88888888776 6677888888888888888888888888887642 122344567777777788888888888888887
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 037409 533 KNCVPSEVTFCTLLRGFV-----QNN-----------KKSKVVVLLHKMAA 567 (603)
Q Consensus 533 ~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~a~~~~~~~~~ 567 (603)
.. +...+|...+.--. +.| ....|..+|+++..
T Consensus 536 rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 536 RT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 63 44446655544332 333 45677888887753
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=2.1e-15 Score=140.98 Aligned_cols=496 Identities=10% Similarity=0.043 Sum_probs=404.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVL 139 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 139 (603)
.+.++|+.++.++.+.-|. +...|.+ |.+..-|+.|..++..+.+. ++.++..|......--..|+.+....++
T Consensus 390 E~~~darilL~rAveccp~-s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQ-SMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHhccc-hHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 3456799999999888665 6776655 45566789999999998765 5889999998888888999999988888
Q ss_pred HHHH----HCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 140 GRIL----RSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDP--NVVTFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 140 ~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
.+.+ ..|+..+...|..=...+-+.|..-.+..+.......|+.. ...+|..-...|.+.+.++-|..+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 7644 46788888899888889999999999999999888887653 34689999999999999999999999999
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+. .+.+...|...+..--..|..++-..+|++.... ++-....|......+...|+...|..++....+.. +.+
T Consensus 544 qv----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 544 QV----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred hh----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 87 4667788888888888899999999999999886 44466677777788889999999999999999875 447
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINA 373 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (603)
...|..-+..-..+.+++.|..+|.+.... .|+..+|..-+..-...+..++|++++++.++. ++.-...|-.+.+.
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 789999999999999999999999998765 567788877777777889999999999999887 22233567777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 374 NCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
+-+.++.+.|...|..-... .+..+-.|..+...--+.|++-.|..+++.....++. +...|...++.-.+.|+.+.|
T Consensus 695 ~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a 772 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQA 772 (913)
T ss_pred HHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHH
Confidence 88899999999888765544 3345667888888888889999999999999877655 778899999999999999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..+..+.+.. ++.+...|..-|....+.++-..+...+++.. -|+...-.+...+....+++.|.+.|.++++.
T Consensus 773 ~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce-----~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 773 ELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE-----HDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhcc-----CCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999888763 36677888888887777776555554444433 37778888889999999999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 534 NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
+ +.+..+|..+...+.+.|.-++-.+++++.....+. ....|..+
T Consensus 847 d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~--hG~~W~av 891 (913)
T KOG0495|consen 847 D-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT--HGELWQAV 891 (913)
T ss_pred C-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC--CCcHHHHH
Confidence 6 566788999999999999999999999998875554 33444433
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=1.1e-15 Score=148.47 Aligned_cols=370 Identities=13% Similarity=0.062 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGL 161 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (603)
...-..+..+...|+.++|..++.+.++.. +.....|..|..+|-..|+.+++...+-.+....+. |...|..+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 334444555666799999999999999987 778899999999999999999999888777766554 668999999999
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhH----HHHHHHHHhc
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTY----NSIIDGLCKD 237 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~ 237 (603)
.+.|++++|.-.|.+..+.. +++....-.-...|-+.|+...|.+.|.++.... .+.|..-+ -.++..+...
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~---p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD---PPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999875 5666666667788999999999999999999874 12222222 2345667777
Q ss_pred CChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------------------------
Q 037409 238 GFVDKAKELLLQMKDR-NINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGV-------------------------- 290 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------------------- 290 (603)
++-+.|.+.++..... +-..+...++.++..+.+...++.+......+.....
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 8889999988887663 2334567788999999999999999988877766222
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 291 -QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 291 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.++... -.+.-++......+...-+........ +.-+...|.-+..++...|.+..|+.+|..+.......+...|
T Consensus 374 ~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 222222 122223334444444444455555555 3335567888999999999999999999999988555567789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--------CCCCCCHHhHHH
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQL--------NDVVPDSFTFAT 439 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~ 439 (603)
-.+..+|...|.++.|.+.|+..+...+ .+...-..|...+.+.|++++|.+.+..+.. ....|+......
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~ 531 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAH 531 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHH
Confidence 9999999999999999999999988633 2556667788889999999999999998642 223444444455
Q ss_pred HHHHHHhCCCHHHHHHHHHH
Q 037409 440 YIDGLCKNGFVLEAVQVFQA 459 (603)
Q Consensus 440 l~~~~~~~g~~~~a~~~~~~ 459 (603)
....+...|+.++-..+...
T Consensus 532 r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 532 RCDILFQVGKREEFINTAST 551 (895)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 55666677776665444433
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=7.1e-15 Score=132.35 Aligned_cols=480 Identities=10% Similarity=0.058 Sum_probs=358.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCC
Q 037409 103 LFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC 182 (603)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 182 (603)
-|+.-++.+ ..+...|....+--..++++..|+.+|++++.... .+...|...+.+-.++..+..|..++++....-
T Consensus 61 efEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l- 137 (677)
T KOG1915|consen 61 EFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL- 137 (677)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-
Confidence 344333332 44556666666677778899999999999998763 478899999999999999999999999987651
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhH
Q 037409 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITY 262 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 262 (603)
+.-...|.-.+-.--..|+...|.++|+...+ ..|+..+|++.|..-.+-..++.|..++++.+-. .|++.+|
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~-----w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~w 210 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWME-----WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNW 210 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHH
Confidence 33334566566556668999999999999998 5799999999999999999999999999998864 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHH
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDN-G-VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPD-TVTYNSLMDGF 339 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 339 (603)
......--+.|....|..+|+...+. | -.-+...+.+....-.++..++.|.-+|+-.++.-+... ...|..+...-
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99998888999999999999988764 1 011233455555555667889999999999987733322 23454554444
Q ss_pred HhcCCHHHHHHH--------HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--hhHHHHHHH-
Q 037409 340 CLVGRISRAREL--------FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSV--ITYNTLLSG- 408 (603)
Q Consensus 340 ~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~- 408 (603)
-+-|+....... ++..++.+ +.|-.+|-..+..-...|+.+...++|++++.. ++|-. ..|.-.|-.
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 455664443332 33444443 456777888888888899999999999999876 44422 222222221
Q ss_pred -------HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 409 -------LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI----DGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 409 -------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
-....+.+.+.++++..++. ++-...||.-+- .--.++.++..|.+++...+ |..|...++-..|.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 13468899999999988873 333445554443 33457889999999998877 66888999999999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 556 (603)
.-.+.++++.+..++++.++.+|. |..+|...+..-...|+.+.|..+|+-+++... ......|...+..-...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 999999999999999999998877 888999888888899999999999999997531 123445677777778899999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHH-----cCC-----------cHHHHHHHHHhh
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDLLS-----KDK-----------KYRECLNQFRHL 601 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~eA~~~~~~~ 601 (603)
+|..+|+++++... ...++...+..-. +.| ++..|+.+|++.
T Consensus 525 kaR~LYerlL~rt~---h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 525 KARALYERLLDRTQ---HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred HHHHHHHHHHHhcc---cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 99999999998653 4446666665444 445 566777777754
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.82 E-value=7.2e-15 Score=130.67 Aligned_cols=341 Identities=16% Similarity=0.188 Sum_probs=243.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCcchH-HHHHHHHHHCCCCCCHhhHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC--LCKMGITSGA-FVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l 157 (603)
+.+-+.++. +..+|...++--+|++|...|++.++..-..+++. |....++.-+ .+.|-.|.+.|.. +..+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 445566655 44588899999999999999888787777776653 3333333322 2333334443322 33333
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.|...+ ++-+.. +.+..++..+|.++|+--..+.|.+++++..... .+.+..+||.+|.+-.-.
T Consensus 191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k---~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAK---GKVYREAFNGLIGASSYS 255 (625)
T ss_pred -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh---heeeHHhhhhhhhHHHhh
Confidence 3444433 333332 5677899999999999999999999999988765 567889999998764432
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKE----AKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDK- 312 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 312 (603)
...++..+|......||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|...+|..+|..+.+.++..+
T Consensus 256 ----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 ----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred ----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 227889999999999999999999999999998765 56788899999999999999999999998887644
Q ss_pred HHHHHHHHHH----CCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---cchHHHHHHHHHhc
Q 037409 313 VNRLLELMIQ----RGVN----PDTVTYNSLMDGFCLVGRISRARELFVSMVSKG----CRHD---VYSYNILINANCKD 377 (603)
Q Consensus 313 a~~~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 377 (603)
+..++.++.. ...+ -|...|...+..|....+.+.|.++..-..... +.++ ..-|..+....|+.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 2222 244567778888889999999988876654431 1222 12356677778888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
...+.-...|+.|.-.-.-|+..+...++++....+.++-.-++|..++..|..-+......++..++
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 88999999999998877778888888899999889999999999988887764444433333333333
No 35
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=2.2e-14 Score=127.64 Aligned_cols=430 Identities=16% Similarity=0.173 Sum_probs=312.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCC-HhHHHHHHHHHHhcCCCCcHHHHHHH
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA--EGR-IMEAARLFKKLNVFACDPNVVTFNTL 192 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l 192 (603)
+.+-+.+++ ....|.+.++.-+|+.|...|.+.+..+...|.+..+- ..+ +-.-++.|-.|...| +.+..+|.
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK-- 191 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK-- 191 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc--
Confidence 345555655 45678899999999999999888888777776654332 222 223345566666655 44555553
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 193 INGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
.|+..+ ++-+. .|....++..+|.++++-...+.|.+++++......+.+..+||.+|.+-.-.
T Consensus 192 ------~G~vAd---L~~E~-------~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 192 ------SGAVAD---LLFET-------LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred ------cccHHH---HHHhh-------cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 344333 22222 45677899999999999999999999999999888888999999999765433
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH-
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDK----VNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISR- 347 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 347 (603)
. ..+++.+|....+.||..|+|+++.+..+-|+++. |.+++.+|++.|+.|...+|..++..+++.++..+
T Consensus 256 ~----~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 256 V----GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred c----cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 2 27889999999999999999999999999998765 55788899999999999999999998888777643
Q ss_pred HHHHHHHHHHc----CCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC---HhhHHHHHHHHHhc
Q 037409 348 ARELFVSMVSK----GCRH----DVYSYNILINANCKDQKVEDAVCLYREMLSE----RIRPS---VITYNTLLSGLFQV 412 (603)
Q Consensus 348 a~~~~~~~~~~----~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~ 412 (603)
+..++.++... .++| |...|...+..|.+..+.+-|.++-.-+... .+.|+ ..-|..+....++.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 45555555432 2222 3455666777888888888888876655432 12222 23356677778888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-Ch--h---
Q 037409 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-RL--K--- 486 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--~--- 486 (603)
...+.....|+.|.-.-.-|+..+...++++....+.++-.-+++..+...|...+......+...+++.. +. .
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 88999999999998877788999999999999999999999999999888776666666666666665544 21 0
Q ss_pred -------H-HHHHH-------HHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 037409 487 -------T-ACKLF-------HRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CVPSEVTFCTLLR 547 (603)
Q Consensus 487 -------~-A~~~~-------~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~ 547 (603)
+ |..++ .++.+. .-.....+.++..+.+.|+.++|.+++.-+.+.+ ..|......-+..
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 0 11111 122222 2345567788888899999999999999987653 2344445567777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.-.+..+...|...++-|...+..
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCch
Confidence 778889999999999999876653
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=2.9e-15 Score=134.09 Aligned_cols=463 Identities=13% Similarity=0.089 Sum_probs=312.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHhHHHHHHHHHHhcCCCCc------HHHHHH
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTF-NFLINGLCAEGRIMEAARLFKKLNVFACDPN------VVTFNT 191 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 191 (603)
+..+.+-|.....+.+|+..++-+++...-|+.-.. ..+...+.+...+.+|++.++-.... .|+ ....+.
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rikil~n 281 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHHHhh
Confidence 344555666677778888888888887666665432 23556778888999999998876654 232 234566
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh--------HH
Q 037409 192 LINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT--------YN 263 (603)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~ 263 (603)
+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|...-..||..- -.
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~-----~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE-----APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh-----CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 667788999999999999999986 46766655666677778999999999999976532222211 12
Q ss_pred HHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHH---H------------------HHHHHHHHhcCCHH
Q 037409 264 SLICGFCCVD-----------DWKEAKCLFIEMMDNGVQPDVVT---F------------------NAMINYNCKDGKMD 311 (603)
Q Consensus 264 ~l~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~---~------------------~~l~~~~~~~~~~~ 311 (603)
.|+.--.+.. +.++++-.-.+++.--+.|+-.. | ..-...+.++|+++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 2222222111 12222222222222112222110 0 01123477899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHH-HHh-cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 037409 312 KVNRLLELMIQRGVNPDTVTYNSLMDG-FCL-VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYRE 389 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 389 (603)
.|.++++-..+..-+.....-+.|-.. |.+ ..++..|.++-+..+... ..+......-...-...|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 999999888766433222222322222 222 346777877777766542 11222222222334457999999999999
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Q 037409 390 MLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI 469 (603)
Q Consensus 390 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 469 (603)
.+..... .....-.+.-.+-..|+.++|++.|-++... ...+...+..+...|....+...|++++.+.... +|.++
T Consensus 516 al~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 9875322 1222222333567889999999999877543 1236677778888999999999999999877653 47899
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG- 548 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 548 (603)
.++..|...|-+.|+-..|....-.--..-+ -|..+...|...|....-+++++.+|+++.- +.|+..-|..++..
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp-~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFP-CNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccC-cchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 9999999999999999999988766555433 3788888899889999999999999999876 57999999776654
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+.+.|++++|..+|+....+-+ .+.+...-|+++....| ..+|.++-
T Consensus 670 ~rrsgnyqka~d~yk~~hrkfp--edldclkflvri~~dlg-l~d~key~ 716 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRKFP--EDLDCLKFLVRIAGDLG-LKDAKEYA 716 (840)
T ss_pred HHhcccHHHHHHHHHHHHHhCc--cchHHHHHHHHHhcccc-chhHHHHH
Confidence 5679999999999999987655 48888888888888777 33444443
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.3e-14 Score=128.91 Aligned_cols=364 Identities=9% Similarity=-0.009 Sum_probs=242.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--HH
Q 037409 222 PDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF--NA 299 (603)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~ 299 (603)
.|...+-.....+.+.|....|.+.|...... .+-.-..|..|... ..+.+.+ ..... +.+.|...+ -.
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHH----HHHHh-cCcccchHHHHHH
Confidence 34444444555566777888888888777654 22233333333332 2222222 22221 222222222 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCcchHHHHHHHHHhc
Q 037409 300 MINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCR--HDVYSYNILINANCKD 377 (603)
Q Consensus 300 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~ 377 (603)
+..++......+++.+-.+.....|.+.....-+....+.....|++.|+.+|+++.+...- .|..+|+.++..- .
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~ 310 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--N 310 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--h
Confidence 34455566677888888888888777766666666666666778888999999888887210 1445555554332 2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
.+.. +..+-+-...--+--+.|...+.+-|+-.++.++|..+|+...+.++. ....|+.+..-|....+...|.+-+
T Consensus 311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHH
Confidence 2211 111111111101124456677778888888899999999988876544 4567778888888888899999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP 537 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 537 (603)
+.+.+.. |-|-..|-.|+.+|.-.+...-|+-.|+++.+..|. |...|.+|+.+|.+.++.++|+..|.++...| ..
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 9888766 668888889999999888888999999988887555 78889999999999999999999999888876 55
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVS-DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+...+..|+..|-+.++.++|...+++.++. |...| ......-|+.-+.+.+++++|..+..+.+
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 6778888899999999999998888887752 22212 23344446677778888888887765543
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=8.3e-15 Score=132.52 Aligned_cols=215 Identities=14% Similarity=0.012 Sum_probs=114.5
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQV 456 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 456 (603)
.|+.-.|..-|+..+.....++. .|.-+...|....+.++....|++....++. ++.+|..-.+...-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 45555666666655554333222 2444445556666666666666665554433 444555555555555566666666
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 037409 457 FQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCV 536 (603)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 536 (603)
|++..... |.+...|..+..+..+.+.+++++..|++..++-|. .+..|+.....+..+++++.|.+.|+.+++..
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-- 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-- 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--
Confidence 66655544 445555555555555556666666666666555333 44555666666666666666666666665542
Q ss_pred CC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 537 PS-------EVTF--CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 537 ~~-------~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
|+ ...+ ..++..- -.+++..|..+++++++..++ ....+..++....+.|+.++|+++|++
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk--ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK--CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch--HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 21 1111 1111111 125556666666666654443 445555666666666666666666654
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=8e-18 Score=154.97 Aligned_cols=261 Identities=17% Similarity=0.155 Sum_probs=103.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKG-CRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+...+...|++++|++++....... .+.+...|..+.......++.+.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44666677777777777775544332 2334455555666666677788888888777765433 45556666655 577
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 413 GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC-KCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
+++++|.+++...-+.. +++..+...+..+...++++++..+++.+... ..+.+...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888777664432 35556667777778888888888888876643 2345677778888888888888888888
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+++.++..|. |......+++.+...|+.+++.++++...+.. +.|+..+..++.+|...|+.++|..++++..+.++.
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 8888887555 67778888888888888888888888777654 556667778888888888888888888888876654
Q ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 572 VSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 572 ~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|+.....+++++.+.|+.++|.++.++++
T Consensus 247 --d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 247 --DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ---HHHHHHHHHHHT----------------
T ss_pred --ccccccccccccccccccccccccccccc
Confidence 88888888888888888888888877654
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.3e-13 Score=120.84 Aligned_cols=367 Identities=11% Similarity=0.013 Sum_probs=243.3
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh
Q 037409 182 CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT 261 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 261 (603)
...|...+......+-+.|....|++.|...+.. .|..-.+|..|..... +.+.+ ..... |.+.|...
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit---~~e~~----~~l~~-~l~~~~h~ 227 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELIT---DIEIL----SILVV-GLPSDMHW 227 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhc---hHHHH----HHHHh-cCcccchH
Confidence 3556566666666777788888888888887765 3444555544443322 22222 22211 11112111
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHH
Q 037409 262 Y--NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN--PDTVTYNSLMD 337 (603)
Q Consensus 262 ~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 337 (603)
. -.+..++-.....+++..-.+.....|++.+...-+....+.-...++++|+.+|+++.+..+- .|..+|+.++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1 1233555556677788877777777776655555555555666777888888888888877321 14456666553
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (603)
.+..+... ..+.+-...--+--+.|...+.+-|.-.++.++|+..|++.++.++. ....|+.+..-|....+...
T Consensus 308 --v~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 --VKNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred --HHhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 33222111 11111111101224455666777788888888888888888886543 55678888888888888888
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
|++.++...+-.+. |-..|-.+.++|.-.+...=|+-.|++..... |.|...|.+|+.+|.+.++.++|++.|.+...
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 88888888876433 77788888888888888888888888888776 77888888899999888899999998888888
Q ss_pred CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 498 KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 498 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.|-. +...+..++..|-+.++.++|...+++.++. |...+ ..+...|..-+.+.+++++|..+.......
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 6544 6678888888888888888888888877652 31112 223344666677888888887777666643
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.74 E-value=1.6e-14 Score=140.01 Aligned_cols=288 Identities=11% Similarity=-0.002 Sum_probs=134.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcc--hHHHHHHHHHhcCChHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVNPDT-VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVY--SYNILINANCKDQKVEDA 383 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A 383 (603)
.|+++.|.+.+.+..+.. |++ ..+-....+....|+.+.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 455555555554444332 221 112222334444455555555555544431 2221 122234444455555555
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH---HHhCCCHHHHHHHHHHH
Q 037409 384 VCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG---LCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~ 460 (603)
...++.+.+..+. +...+..+...+...|++++|.+++..+.+.++.+.......-..+ ....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 5555555554322 3344455555555555555555555555544332111110100111 11112222222333333
Q ss_pred HHcCC---CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 037409 461 RNCKC---ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC-STMIHWLCKEGQMDKANDLLLDMEAKNCV 536 (603)
Q Consensus 461 ~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 536 (603)
.+... +.++..+..++..+...|+.++|.+.+++..+..+.+....+ ..........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 32211 135566666666666666666666666666664333211111 111111223455566666666666542 3
Q ss_pred CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 537 PSE--VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 537 ~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.|+ .....+++.+.+.|++++|.+.+++....... |+++.+..++..+.+.|+.++|.+++++-
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~-p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQ-LDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344 44556666666666666666666643332233 55555666666666666666666666653
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.74 E-value=3.7e-14 Score=136.56 Aligned_cols=293 Identities=8% Similarity=0.033 Sum_probs=160.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLN--LLINCLC 127 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 127 (603)
+..+.+....|+++.|++......+..+.| ...+.....+..+.|+++.|...+.++.+. .|+..... .....+.
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l 164 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQL 164 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHH
Confidence 455555555677777776666654432221 222333334446677777777777777654 33432222 2345666
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH-------HHHHHHHHHHHhcC
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV-------VTFNTLINGLCRTR 200 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g 200 (603)
..|+++.|...++++.+..+. +..+...+...|.+.|++++|.+++..+.+.+..++. .+|..++.......
T Consensus 165 ~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 165 ARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 677777777777777666543 5566666677777777777777777777665422111 11222222222333
Q ss_pred ChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037409 201 NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC 280 (603)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 280 (603)
+.+...++++...+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++++
T Consensus 244 ~~~~l~~~w~~lp~~----~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 244 GSEGLKRWWKNQSRK----TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred CHHHHHHHHHhCCHH----HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 444444445544433 3445555666666666666666666666666553 2233111 2223334466666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 281 LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
..+...+.. +-|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 316 ~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 666665542 334445556666666666666666666666654 45555555666666666666666666665543
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.73 E-value=3.3e-14 Score=137.78 Aligned_cols=298 Identities=9% Similarity=-0.047 Sum_probs=132.8
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHh
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDL--FVLNLLINCLCK 128 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 128 (603)
..+.+....|+++.|.+.+.+..+..|.| ...+-....+..+.|+++.|.+.+.++.+.. |+. .........+..
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHH
Confidence 34444445566666666666555544332 2233344455555566666666666655432 222 222223555555
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH---HHHHHhcCChHHH
Q 037409 129 MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTL---INGLCRTRNTLVA 205 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A 205 (603)
.|+++.|...++.+.+..+. +..++..+...+.+.|++++|.+.++.+.+.+..+.......- .......+..+++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666666666666555433 4445555555666666666666666666555422111110100 0111122222222
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhh---HHHHHHHHHhcCCHHHHHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVIT---YNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~ 282 (603)
.+.+..+.+......+.+...+..++..+...|+.++|.+++++..+.. |+... ...........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333333332100011244555555555555555555555555555542 12111 011111112234444455555
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 283 IEMMDNGVQPDV--VTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 283 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
+...+.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 323 e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444431 1122 3334444555555555555555553222222344444445555555555555555555543
No 44
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.5e-13 Score=124.59 Aligned_cols=224 Identities=11% Similarity=0.097 Sum_probs=147.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH
Q 037409 304 NCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDA 383 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 383 (603)
+.-.|+.-.+..-|+..+.....++. .|..+..+|...++.++.++.|+.....+ +-++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 44467777777777777776544322 26666667777778888888888777765 33666777777777777778888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 384 VCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
..-|++.+...+. +...|..+.-+..+.+.++++...|++.++. ++..+..|+...+.+...++++.|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888777765332 4455555555556677777777777777665 3335667777777777777777777777777653
Q ss_pred CCC-----CCh--HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 464 KCE-----LRI--ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 464 ~~~-----~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
... .++ .+.-.++..- -.+++..|..++.+..+.+++ ....+..|+..-.+.|+.++|+++|++....
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 211 111 1112222211 236777778888777776665 5566777777777778888888887776653
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=4e-14 Score=136.35 Aligned_cols=283 Identities=10% Similarity=0.005 Sum_probs=167.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHH
Q 037409 272 VDDWKEAKCLFIEMMDNGVQPDVVT-FNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTY--NSLMDGFCLVGRISRA 348 (603)
Q Consensus 272 ~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a 348 (603)
.|++++|.+.+....+.. +++.. +........+.|+++.+...+.++.+. .|+.... ......+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 577777777766655432 12222 222233446777777777777777655 3333222 2335566777777777
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHH
Q 037409 349 RELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI-------TYNTLLSGLFQVGNLGDALKL 421 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~ 421 (603)
.+.++.+.+.. +.+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777777664 3355666677777777777777777777777664432221 222223333333444555555
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 422 IDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++.... ++.+....++.+++.+.+++..+..+.
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~ 326 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD 326 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence 5555332 1235555666666666777777777777666652 3344222 122223446666677777666666554
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
|...+..++..+.+.+++++|.+.|+++.+. .|+...+..+..++.+.|+.++|..++++...
T Consensus 327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5556666666777777777777777777664 46666666666777777777777777666653
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2.9e-13 Score=125.11 Aligned_cols=471 Identities=10% Similarity=-0.047 Sum_probs=276.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+..-+..+.+-+..+.++..|.-+-++.... ..|+.....+.+++.-.|++.+|..++..-.-. ..|.........
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l--~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGL--TNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhc--cCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 4556777777777788888888887777655 366677777888888888898888777554222 336667777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhc--CCCCcHHH----------H-----HH-------HHHHHHhcCChHHHHHHHHHHHHh
Q 037409 160 GLCAEGRIMEAARLFKKLNVF--ACDPNVVT----------F-----NT-------LINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----------~-----~~-------l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
.+.+..++++|..++...... .+.-+..+ + +. -...|....+.++|...|.+.+.
T Consensus 91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~- 169 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL- 169 (611)
T ss_pred HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh-
Confidence 888888899998888732110 00000000 0 00 01122223344444444444433
Q ss_pred cCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 216 FGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI----NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ 291 (603)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 291 (603)
.|...+..+...-.. ..-.+.+.++.+..... ..+......+.........-+.....-++..-.+..
T Consensus 170 ------~D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~ 241 (611)
T KOG1173|consen 170 ------ADAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLA 241 (611)
T ss_pred ------cchhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhh
Confidence 233333322211111 01111111222211100 001111111111100000000000000000011223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHH
Q 037409 292 PDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILI 371 (603)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (603)
.+......-..-+...+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.++++.- |....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHH
Confidence 344445555566667778888888888877764 3344555555566777777766666666666652 44567777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 372 NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
.-|.-.|+..+|.+.|.+....+.. =...|-.+...|+..|..++|+..+...-+.- +-...-+..+.--|.+.++.+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 7777778888888888877654322 13457777778888888888888777664431 112222333445577778888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC----CCC-C-CHhHHHHHHHHHHHcCChhHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK----GPI-P-DVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p-~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
.|.+.|.+..... |.|+..++.+.-.....+.+.+|...|+..+.. +.+ + -..+++.|+++|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 8888888877654 667777777777777778888888888877631 111 1 13457778888888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
.+++.+... +.+..++..++-.|...|+++.|.+.+.+.+...
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 888888774 6678888888888888888888888888887644
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.72 E-value=2.2e-11 Score=114.43 Aligned_cols=503 Identities=12% Similarity=0.121 Sum_probs=289.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSN-GLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+..|...+..+.++|+...-...|++++.. .+......|...+......|-++.+..++++.++. ++..-+-.+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 356778888888888888888888887764 33334557777777777888888888888888876 3344666777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcC------CCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHHhcCCccCCChhhHHHH
Q 037409 160 GLCAEGRIMEAARLFKKLNVFA------CDPNVVTFNTLINGLCRTRNTL---VALKLFEEMVNEFGAICKPDVVTYNSI 230 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~l 230 (603)
.++..++.++|.+.+..+.... .+.+...|..+-....+..+.- ....+++.++.+. ...-...|.+|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC---cHHHHHHHHHH
Confidence 7888888888888888765321 1344455666666666544322 2334444444432 11224567888
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHC
Q 037409 231 IDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD----------------------DWKEAKCLFIEMMDN 288 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~~~~~ 288 (603)
.+.|.+.|.+++|.++|++....- .++.-|+.+.+.|+.-. +++-.+.-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 888888888888888888876641 23444444444443211 123333444444433
Q ss_pred C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHHHHHhcCCHHHHHHH
Q 037409 289 G-----------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPD------TVTYNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 289 ~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~ 351 (603)
+ -+.++..|..-+.. ..|+..+....+.++.+. +.|. ...|..+.+.|-..|+++.|..+
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 1 12233344333332 255666677777777654 2221 24577888888889999999999
Q ss_pred HHHHHHcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-----------------CHhhHHHHHHHHHh
Q 037409 352 FVSMVSKGCRHD---VYSYNILINANCKDQKVEDAVCLYREMLSERIRP-----------------SVITYNTLLSGLFQ 411 (603)
Q Consensus 352 ~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~ 411 (603)
|++..+...+.- ..+|.....+-.+..+++.|+++.++.......| +...|..+++.--.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 988887643321 2344444555556778888888888766532111 22345556666666
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHh-C--CChhH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI-ETYNCLINGLCK-M--GRLKT 487 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~--g~~~~ 487 (603)
.|-++....+++.+....+. ++.........+..+.-++++.++|++-....-.|+. .+|+..+.-+.+ - ..++.
T Consensus 490 ~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 77788888888888766544 3333333333344556677888887776655434443 566665555443 2 26788
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHH--HHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 488 ACKLFHRLQHKGPIPDVVTCSTMI--HWLCKEGQMDKANDLLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLH 563 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (603)
|..+|++.++. .+|...-+-.|+ ..--+.|-...|+.+++++... +++. ...|+..+.--...=-......+|+
T Consensus 569 aRdLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 569 ARDLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 88888888873 334322222222 2222456667777777776543 2222 1223333322222112233444555
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 564 KMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 564 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
++++.-+.....+.....++.-.+.|..+.|+.+|
T Consensus 647 kaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIy 681 (835)
T KOG2047|consen 647 KAIESLPDSKAREMCLRFADLETKLGEIDRARAIY 681 (835)
T ss_pred HHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 55443211011123333444444555555555554
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=7.7e-15 Score=138.28 Aligned_cols=288 Identities=12% Similarity=0.018 Sum_probs=187.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGV--NPDTVTYNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 351 (603)
+..+|...|..+... +.-.......+..+|...++++++.++|+.+.+..+ .-+..+|.+.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 233335556667777777788888887777776531 1244566666543321 223333
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV 431 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (603)
+.+-+-.--+..+.+|.++.++|.-+++++.|++.|++.++.+.. ...+|+.+..-+.....+|.|...|+..+...+.
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 322222212445677777777777777777777777777765322 4566777777777777777777777777653222
Q ss_pred CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 037409 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMI 511 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 511 (603)
+-..|..+...|.+.++++.|+-.|+++.+.+ |.+......++..+-+.|+.++|+.+++++...+++ |+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 33445556667777777777777777777665 556666777777777777777777777777776666 555555566
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..+...+++++|+..++++.+. ++.+..++..++..|.+.|+.+.|+.-+.-+.+..++
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6677777777777777777775 2444556777777777777777777777777765554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.70 E-value=1.6e-16 Score=146.32 Aligned_cols=256 Identities=14% Similarity=0.096 Sum_probs=84.9
Q ss_pred hccCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 037409 56 KSGNITSNEAVYFFDCMIKMK-PSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG 134 (603)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (603)
....|++++|++++++..... ++.+..-|..+.......++++.|+..++++...+ +.++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccc
Confidence 334567777777775544333 33455566666666666777777777777776654 3345555555555 56677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
|..+++...+.. ++...+..++..+.+.++++++..+++++.... .+++...|..+...+.+.|+.++|++.+++++
T Consensus 96 A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 96 ALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666655442 344555566666667777777777777655422 23455566666677777777777777777777
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+. .|.|......++..+...|+.+++.+++....+.. +.|+..+..+..+|...|+.++|+.+|++..... +.|
T Consensus 174 ~~----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 174 EL----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HH-----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred Hc----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 65 24456666666667777777776666666665542 3355566666677777777777777777766643 345
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
......+..++...|+.++|.++.+++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 6666666666667777777766665543
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=3.2e-12 Score=111.24 Aligned_cols=456 Identities=12% Similarity=0.125 Sum_probs=272.0
Q ss_pred HHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037409 47 IAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL 126 (603)
Q Consensus 47 ~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (603)
+..|+.. .|+.+|+.+++-.+..+..-...+-.-+...+.+.|++++|+..|..+.... .++......+.-++
T Consensus 29 Ledfls~------rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 29 LEDFLSN------RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCK 101 (557)
T ss_pred HHHHHhc------ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHH
Confidence 4456654 4899999999988765433222222235667789999999999999988765 56677777777778
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHH
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVAL 206 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 206 (603)
.-.|.+.+|..+-....+ +.---..+.....+.++-++-.+..+.+.. ....-.+|.......-.+.+|+
T Consensus 102 FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAI 171 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAI 171 (557)
T ss_pred HHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHH
Confidence 888999999888766533 233334445555667777666666655542 2233444555555566789999
Q ss_pred HHHHHHHHhcCCccCCChhhHHH-HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNS-IIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
+++..++..+ |+-...|. +.-+|.+..-++-+.+++.-..+. ++.++...|.......+.=.-..|.+-.+++
T Consensus 172 dvYkrvL~dn-----~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~l 245 (557)
T KOG3785|consen 172 DVYKRVLQDN-----PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKEL 245 (557)
T ss_pred HHHHHHHhcC-----hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 9999998753 44444444 445677888888888888877764 4445555665555554443334455555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037409 286 MDNGVQPDVVTFNAMINYNCKD-----GKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360 (603)
Q Consensus 286 ~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 360 (603)
.+.+-.. | ..+.-.++. .+-+.|.+++-.+.+. -|. .-..++--|.+.++..+|..+..++...
T Consensus 246 adN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-- 314 (557)
T KOG3785|consen 246 ADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT-- 314 (557)
T ss_pred Hhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--
Confidence 5543111 1 112222222 2345666666655543 122 2223444477788888887776655321
Q ss_pred CCCcchHHHHHHH-----HHhcCChHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 037409 361 RHDVYSYNILINA-----NCKDQKVEDAVCLYREMLSERIRPSV-ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS 434 (603)
Q Consensus 361 ~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (603)
.|.......++.+ ........-|.+.|+-.-..+..-|+ ..-.++...+.-..++++++.+++.+...-...|.
T Consensus 315 tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~ 394 (557)
T KOG3785|consen 315 TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDD 394 (557)
T ss_pred ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 1111111122111 11122234455555444333332222 12334555555667788888888877765444344
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH-HHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT-CSTMIHW 513 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~ 513 (603)
..+ .+.++.+..|++.+|+++|-.+....++.+..-...|.++|.+++.++.|..++-++-. ..+..+ +..+...
T Consensus 395 Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~ 470 (557)
T KOG3785|consen 395 FNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIAND 470 (557)
T ss_pred hhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHH
Confidence 333 56778888888888888887776544444444456677788888888888777655543 112333 3445556
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
|.+.+.+=-|.+.|..+... .|++..|
T Consensus 471 CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 471 CYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 77888887777778777764 4666555
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=3.6e-13 Score=115.71 Aligned_cols=268 Identities=15% Similarity=0.097 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCcchHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD---LFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
.++.|+.+|-+|++.+|. ...+.-++++.|-+.|..+.|+.+...+.+..-.+. ..+...+.+-|...|-+++|.+
T Consensus 50 Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455555555555554433 444555555555555556666555555554311111 1123334455555555555555
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHH----HHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVV----TFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
+|..+...+.- -..+...|+..|-...++++|+.+-+++.+.+-++..+ .|.-+...+....+.+.|..++.+..
T Consensus 129 ~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 55555443211 23344445555555555555555555555443222211 23334444444455555555555555
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+.+ +..+.+-..+.+.....|+++.|.+.++.+.+.+..--+.+...|..+|.+.|+.++....+..+.+.. +.
T Consensus 208 qa~----~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g 281 (389)
T COG2956 208 QAD----KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TG 281 (389)
T ss_pred hhC----ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CC
Confidence 542 223333334445555555555555555555554333333444455555555555555555555555442 22
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDG 338 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
...-..+...-....-.+.|...+.+-+.. .|+...+..++..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 222223333223333334444444333333 3444444444443
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.1e-12 Score=117.09 Aligned_cols=463 Identities=16% Similarity=0.109 Sum_probs=288.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
..++..|.-+-+++....- ++..-.-+++++.-.|+++.|..+...-.-. ..|.........++.+..++++|..+
T Consensus 29 q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~v 104 (611)
T KOG1173|consen 29 QHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLV 104 (611)
T ss_pred HHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888877653 3344445778888888888888877765332 45666777778888888899998888
Q ss_pred HHHHHHC--CCCCCHhh-HH--------------HHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRS--CFTPNTVT-FN--------------FLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN 201 (603)
Q Consensus 139 ~~~~~~~--~~~~~~~~-~~--------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (603)
+...... .+.-+... -+ .-...|.-.|.+-.|.+-+++... ......++.+.+
T Consensus 105 l~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~------~Y~~Al~~D~~c---- 174 (611)
T KOG1173|consen 105 LGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARD------KYKEALLADAKC---- 174 (611)
T ss_pred hcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHH------HHHHHHhcchhh----
Confidence 8743111 01101111 00 001111222333333333333221 111111112211
Q ss_pred hHHHHHHHHHHHHhcCC----------------ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHH
Q 037409 202 TLVALKLFEEMVNEFGA----------------ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSL 265 (603)
Q Consensus 202 ~~~A~~~~~~~~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 265 (603)
.+.|+.++...-- ....+......+.........-++....-.+..-.+..-+.......
T Consensus 175 ----~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 175 ----FEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred ----HHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 1112222211000 00011111111111110000111111111111111233455666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 266 ICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRI 345 (603)
Q Consensus 266 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 345 (603)
.+-+...+++.+..++++.+.+.. +++...+..-|..+...|+..+-..+=.++.+.- +..+.+|-.+.--|...|..
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCc
Confidence 777788899999999999988874 6666677777778888888877777777777663 33667888888888888999
Q ss_pred HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 346 SRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKM 425 (603)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (603)
++|.+.|.+....+ +.-...|-.+...|.-.+..++|+..+..+.+.-. -....+--+.--|.+.++.+.|.+.|.+.
T Consensus 329 seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 329 SEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred HHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999887763 11345788888889999999999998887766411 11122333444578889999999999888
Q ss_pred hhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC-C-ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 426 QLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KCE-L-RIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
.... +.|+...+.+.-.....+.+.+|..+|+..+.. ..+ + ...+++.|+.+|.+++.+++|+..+++.+...
T Consensus 407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 7653 336777777777777788999999999877621 111 1 24568889999999999999999999999876
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 500 PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 500 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
++ +..++.+++..|...|+++.|++.|.+.+.. .|+..+...++.
T Consensus 486 ~k-~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 486 PK-DASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLK 530 (611)
T ss_pred CC-chhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHH
Confidence 66 8889999999999999999999999998875 577655555544
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=2e-14 Score=135.57 Aligned_cols=278 Identities=11% Similarity=0.018 Sum_probs=165.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCcchHHHHHHHHHhcCChHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC--RHDVYSYNILINANCKDQKVEDAVCL 386 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 386 (603)
+..+|...|..+..+ +..+..+...+..+|...+++++|+++|+.+.+... -.+...|...+.-+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 345666666663333 333445556666677777777777777777665420 113344444433221 1 112222
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037409 387 Y-REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC 465 (603)
Q Consensus 387 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 465 (603)
+ +.+... -+..+.+|.++..+|.-+++++.|++.|++....+.. ...+|+.+..-+.....++.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 2235566777777777777777777777776654322 45666666666666667777777777666433
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+-+..+|..++-.|.+.++++.|+-.|+++.+.+|. +.+....++..+-+.|+.++|+++++++...+ +.|+..-..-
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 223445555666677777777777777777776655 56666666666667777777777777777664 4555555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+..+...+++++|+..++++.+.-+ .+..++..++..|-+.|+.+.|+.-|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP--~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVP--QESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCc--chHHHHHHHHHHHHHHccchHHHHhh
Confidence 6666667777777777777766443 36666677777777777776666544
No 54
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.68 E-value=4.2e-10 Score=106.08 Aligned_cols=522 Identities=10% Similarity=0.053 Sum_probs=347.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPS-PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
-+|++..-+..|++++..=|- .....|...+.-....|-++-++.+|++.++. ++....--+..++..++.++|.
T Consensus 114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence 368889999999999876543 34567999999888999999999999999965 4455777788899999999999
Q ss_pred HHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHhHHH---HHHHHHHhcCCCCcH--HHHHHHHHHHHhcCChHHH
Q 037409 137 VVLGRILRSC------FTPNTVTFNFLINGLCAEGRIMEAA---RLFKKLNVFACDPNV--VTFNTLINGLCRTRNTLVA 205 (603)
Q Consensus 137 ~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A 205 (603)
+.+..++... .+.+-..|..+-....+..+.-..+ .+++.+... -+|. ..|++|..-|.+.|.+++|
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka 267 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA 267 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence 9998877542 2345667777777666654433322 333333322 3444 4689999999999999999
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhc----------------C------ChhHHHHHHHHHhhCC---------
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD----------------G------FVDKAKELLLQMKDRN--------- 254 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a~~~~~~~~~~~--------- 254 (603)
.++|++.+..- ..+.-|..+.+.|+.. | +++-....|+.+..+.
T Consensus 268 rDvyeeai~~v-----~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 268 RDVYEEAIQTV-----MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHhh-----eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 99999988752 3333444444444321 1 1222333444443331
Q ss_pred --CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 255 --INPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD------VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 255 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
-+.++..|..-+. +..|+..+-...|.+.... +.|. -..|..+...|-..|+++.|..+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 1223444443333 2456777888888888765 2222 246888999999999999999999998876433
Q ss_pred CC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------C------CcchHHHHHHHHHhcCChHHHHHH
Q 037409 327 PD---TVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-----------H------DVYSYNILINANCKDQKVEDAVCL 386 (603)
Q Consensus 327 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~A~~~ 386 (603)
-- ..+|..-..+-.+..+++.|.++++.+...... + +...|...++.--..|-++....+
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~v 499 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAV 499 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHH
Confidence 11 234555555556777889999988887643211 1 223345555555667888888899
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHh---CCCHHHHHHHHHHHHH
Q 037409 387 YREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS-FTFATYIDGLCK---NGFVLEAVQVFQAIRN 462 (603)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 462 (603)
++++++..+. ++.......-.+-.+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++.|..+|++.++
T Consensus 500 YdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 500 YDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD 578 (835)
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence 9999887654 3333333333455666788999999988776555654 355555544433 3468999999999998
Q ss_pred cCCCCChH--HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 037409 463 CKCELRIE--TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS 538 (603)
Q Consensus 463 ~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 538 (603)
+.||... .|......--+.|-...|+.+++++... +.+. ...||.+|.--...=-......+|+++++. -|+
T Consensus 579 -~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~ 654 (835)
T KOG2047|consen 579 -GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPD 654 (835)
T ss_pred -cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CCh
Confidence 6565432 2333333334568888999999997664 3322 346777776554444455667889999886 466
Q ss_pred HHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 539 EVTF---CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 539 ~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
...- ...+..-.+.|..+.|..+|....+...+-.+.+.|...-..-.+-|+-+.-.+++
T Consensus 655 ~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 655 SKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5443 33455567899999999999988765332267888888888888999955544443
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=9.9e-13 Score=113.09 Aligned_cols=302 Identities=17% Similarity=0.135 Sum_probs=190.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCC---CHhhHHHHHH
Q 037409 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTP---NTVTFNFLIN 159 (603)
Q Consensus 83 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~ 159 (603)
.|..-++.+. +++.++|.+.|-+|++.+ +....+...+++.|.+.|..++|+.+++.+.+.---+ ...+...|..
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 3444444443 677899999999999865 5556677888999999999999999999888752111 1224555777
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC-hhhHHHHHHHHHhcC
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD-VVTYNSIIDGLCKDG 238 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 238 (603)
-|...|-++.|..+|..+.+.+ ..-..+...|+..|-...++++|++.-+++.+.++...... ...|.-+...+....
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~ 194 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASS 194 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhh
Confidence 7888999999999999887644 33455677888888888999999998888887652111111 122334455555566
Q ss_pred ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 239 FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLE 318 (603)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 318 (603)
+++.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++....+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 195 DVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred hHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 777777777777665322 3444455566677777777777777777766443334556666677777777777777777
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHh
Q 037409 319 LMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK---DQKVEDAVCLYREMLS 392 (603)
Q Consensus 319 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~ 392 (603)
.+.+....+ ..-..+........-.+.|...+.+-+.. +|+...+..++..... .|...+.+.++++|..
T Consensus 274 ~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 274 RAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 766653222 22233333333333345555554444444 4566666666655433 2234444444555443
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=2.2e-12 Score=114.61 Aligned_cols=286 Identities=14% Similarity=0.086 Sum_probs=179.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (603)
..|+|.+|+++..+-.+.+-. ....|..-..+.-..|+.+.+-+++.++-+....++....-+........|+.+.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 467888888887776666522 2334444555566677888888888777766444555666666677777777788877
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHH
Q 037409 351 LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI-------TYNTLLSGLFQVGNLGDALKLID 423 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 423 (603)
-++++.+.+ +..+........+|.+.|++.....++..+.+.+.-.+.. +|..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 777777764 3355666777777777888888887777777776554432 34444444444444444444555
Q ss_pred HHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC
Q 037409 424 KMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD 503 (603)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 503 (603)
..... .+.++..-.+++.-+..+|+.++|.++.++..+....++ ....-.+.+-++.+.-++..++..+..+. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 54332 223444555666666677777777777766666554444 11122344555666666666665554443 4
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+..+.+|+..|.+++.|.+|.+.|+..++. .|+..+|..++.++.+.|+.++|.+..++.+
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 556666777777777777777777766664 4666777777777777777777776666665
No 57
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.65 E-value=4.2e-11 Score=115.27 Aligned_cols=477 Identities=11% Similarity=0.015 Sum_probs=284.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLIN---CLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIME 169 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (603)
..+....++.-+......+++.++.++..+-. .|...++.++. .++. .+.. .+....+.++
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lll-li~e--------------s~i~Re~~~d 302 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLL-LIEE--------------SLIPRENIED 302 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHH-HHHh--------------hccccccHHH
Confidence 34566777777777777776666666555432 22333333333 1111 1111 1222233333
Q ss_pred HHHH----HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHH
Q 037409 170 AARL----FKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKE 245 (603)
Q Consensus 170 A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 245 (603)
+... +.++....+.-|...|..+.-++.+.|+++.+.+.|++.... .-.....|..+...+...|.-..|..
T Consensus 303 ~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~----~~~~~e~w~~~als~saag~~s~Av~ 378 (799)
T KOG4162|consen 303 AILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF----SFGEHERWYQLALSYSAAGSDSKAVN 378 (799)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh----hhhhHHHHHHHHHHHHHhccchHHHH
Confidence 3221 222222223456677777777778888888888888887654 23445677788888888888888888
Q ss_pred HHHHHhhCCCCCChhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------C
Q 037409 246 LLLQMKDRNINPNVITYNSLI-CGFC-CVDDWKEAKCLFIEMMDN--GV--QPDVVTFNAMINYNCKD-----------G 308 (603)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~ 308 (603)
+++........|+..+-..++ ..|. +.+.+++++++-.+..+. +. ......+..+.-+|... .
T Consensus 379 ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~ 458 (799)
T KOG4162|consen 379 LLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDA 458 (799)
T ss_pred HHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHH
Confidence 887765543234333333333 3333 346667777666666552 11 11223333333333321 1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 388 (603)
...++.+.+++..+.+.. |+.+...+.--|+..++.+.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+
T Consensus 459 ~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 459 LHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 245677777777766543 3333333444477788888888888888887656677888888888888888888888887
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----------------------------CCCCCHHhHHHH
Q 037409 389 EMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN----------------------------DVVPDSFTFATY 440 (603)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------------------------~~~~~~~~~~~l 440 (603)
.....-.. |......-+..-..-++.++++.....+... .......++..+
T Consensus 538 ~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l 616 (799)
T KOG4162|consen 538 AALEEFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL 616 (799)
T ss_pred HHHHHhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH
Confidence 76654111 1111111111112234444444333322110 000011111111
Q ss_pred HHHHHhCC---CHHHHHHHHHHHHHcCCC--CC------hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH
Q 037409 441 IDGLCKNG---FVLEAVQVFQAIRNCKCE--LR------IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST 509 (603)
Q Consensus 441 ~~~~~~~g---~~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 509 (603)
..-....+ ..+.. +.+.... |+ ...|......+.+.++.++|...+.+.....+. ....|..
T Consensus 617 s~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~ 689 (799)
T KOG4162|consen 617 SSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYL 689 (799)
T ss_pred HHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHH
Confidence 11111000 00000 1111111 11 234556667788889999999888888886544 6677888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV--LLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
.+..+...|.+.+|.+.|..+...+ |.+..+...++.++.+.|+..-|.. ++..+++.++. +++.|..++..+-+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKK 766 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHH
Confidence 8888899999999999999999875 5567788999999999999888877 99999987775 89999999999999
Q ss_pred CCcHHHHHHHHHhh
Q 037409 588 DKKYRECLNQFRHL 601 (603)
Q Consensus 588 ~g~~~eA~~~~~~~ 601 (603)
.|+.++|.+.|...
T Consensus 767 ~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 767 LGDSKQAAECFQAA 780 (799)
T ss_pred ccchHHHHHHHHHH
Confidence 99999999888653
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.64 E-value=8.5e-12 Score=110.92 Aligned_cols=286 Identities=12% Similarity=0.045 Sum_probs=154.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHH
Q 037409 94 NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARL 173 (603)
Q Consensus 94 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 173 (603)
.|+|.+|.+...+..+.+ +-....|..-+.+-...|+.+.+-.++.++.+.-.+++..+..+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 455666666555555544 1122233333445555556666666665555554444455555555555556666666555
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC-------hhhHHHHHHHHHhcCChhHHHHH
Q 037409 174 FKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD-------VVTYNSIIDGLCKDGFVDKAKEL 246 (603)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~ 246 (603)
.+++.+.+ +.+........++|.+.|++.+...++.++.+.+ .-.+ ..+|..+++-....+..+.-...
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~---~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~ 251 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAG---LLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTW 251 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHcc---CCChHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence 55555543 4444555555566666666666666666555543 1111 23445555554444444444444
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 247 LLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
++..... ..-++..-.+++.-+.++|+.++|.++.++..+.+..|+ -.....+.+-++...-++..+.-.+.. +
T Consensus 252 W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~ 325 (400)
T COG3071 252 WKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-P 325 (400)
T ss_pred HHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-C
Confidence 5444332 233455555566666666666666666666666544333 112223444555555555555544432 2
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 327 PDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
.++..+.+|...|.+.+.+.+|.+.|+...+. .|+..+|+.+..++.+.|+..+|.+++++.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 24455666666666666677776666665554 45666666666666667776666666666543
No 59
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.63 E-value=2e-10 Score=108.50 Aligned_cols=424 Identities=13% Similarity=0.058 Sum_probs=208.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.+.+..-++..+.++...|. ...+....+-.+...|+.++|....+..++.+ .-+...|..++-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~~e-HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPE-HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCc-cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45666666666666665443 34455555555566677777777777766654 34455666666666666777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
|..+.+.+.+ |...|.-+.-.-++.|+++.....-.++.+.. +.....|..+..+..-.|++..|..++++..+...
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~- 174 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN- 174 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-
Confidence 7777776543 66666666655666677766666666655542 33445666666677777777777777777666532
Q ss_pred ccCCChhhHHHHHHHH------HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037409 219 ICKPDVVTYNSIIDGL------CKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP 292 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 292 (603)
..|+...+......+ .+.|..++|.+.+...... +......-..-...+.+.+++++|..++..++.. .|
T Consensus 175 -~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 175 -TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 234444444333322 2355556665555444332 1112222233445566667777777777777665 35
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 037409 293 DVVTFNAMINYNC-KDGKMDKVN-RLLELMIQRGVNPDTVT-YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNI 369 (603)
Q Consensus 293 ~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
|...|...+..+. +-.+.-++. .+|....+. .|.... ...-+.......-.+..-+++....+.|+++ ++..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhh
Confidence 5554444433332 222222222 444443332 111111 1111111111122333344455555555332 3333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh----CC----------CCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 037409 370 LINANCKDQKVEDAVCLYREMLS----ER----------IRPSVITYN--TLLSGLFQVGNLGDALKLIDKMQLNDVVPD 433 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~----~~----------~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (603)
+...|-.....+-..++...+.. .+ -+|....|+ .++..+-..|+++.|..+++..... .|+
T Consensus 326 l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPT 403 (700)
T KOG1156|consen 326 LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPT 403 (700)
T ss_pred hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cch
Confidence 43333222211111111111111 00 123333332 2334455556666666655555543 222
Q ss_pred -HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 434 -SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 434 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
...|..-.+.+...|++++|..++++..+.+ .+|..+-.--+.-..+.++.++|.++.....+.|
T Consensus 404 liEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 404 LIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 2233333345555556666666655555544 2333333334444445555566655555555543
No 60
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.1e-11 Score=105.28 Aligned_cols=449 Identities=11% Similarity=0.052 Sum_probs=286.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRI 167 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 167 (603)
+.-+..+.++..|+.+++-....+-.-...+-..+.-++...|++++|...+..+... ..++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4456678899999999988775542222234445667888999999999999988875 456777888888888888999
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL 247 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 247 (603)
.+|.++-.+.. .++.--..+...-.+.++-++-....+.+... ..--.++.......-.+++|++++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~--------~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--------LEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--------HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99998877653 23334444556666777776666665555442 233345566555666799999999
Q ss_pred HHHhhCCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 248 LQMKDRNINPNVITYNS-LICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
.++... .|+....|. +.-+|.+.+-++-+.++++..++. ++.+....|..+....+.=+-..|.+-...+.+.+-.
T Consensus 175 krvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 175 KRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc
Confidence 999875 344444444 345677888889899999888776 2334444554444444433333333444444443321
Q ss_pred CCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh
Q 037409 327 PDTVTYNSLMDGFCLV-----GRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVIT 401 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 401 (603)
. | ..+.-.++. ..-+.|++++-.+.+. -+..--.|+--|.+.+++++|..+..++... ++.-
T Consensus 252 ~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~E 318 (557)
T KOG3785|consen 252 E----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYE 318 (557)
T ss_pred c----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHH
Confidence 1 1 112222222 2446788877776654 2233344666788999999999998876431 2222
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHH
Q 037409 402 YNTLLSGLFQVGN-------LGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYN 473 (603)
Q Consensus 402 ~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 473 (603)
|..-.-.++..|+ ..-|...|+..-..+..-|.. --.++...+.-..++++.+..++.+.......|... .
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~ 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-L 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-h
Confidence 2222222333333 445566665554333222221 122344445555678889988888887654444444 4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC-STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV-TFCTLLRGFVQ 551 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~ 551 (603)
.+..+++..|++.+|+++|-++....++ |..+| ..+.++|.+.++.+.|+.++-++.. +.+.- .+..+++-|.+
T Consensus 398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYK 473 (557)
T ss_pred HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHH
Confidence 6788999999999999999988876556 55565 4667889999999999887665532 22333 34556677888
Q ss_pred cCCHHHHHHHHHHHHHCCCC
Q 037409 552 NNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+.+=-|.+.+..+....+.
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC
Confidence 89887777777777665544
No 61
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.61 E-value=5.6e-10 Score=105.52 Aligned_cols=428 Identities=14% Similarity=0.119 Sum_probs=284.6
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
-|.....-|+.++|.......+..++. +.++|..++-.+-...++++|++.|+.++..+ +.+...+..+.-.-++.|+
T Consensus 47 kGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd 124 (700)
T KOG1156|consen 47 KGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRD 124 (700)
T ss_pred ccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHh
Confidence 344445678999999999999887655 88899999988888889999999999999887 6778888888888889999
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHHHHH------HHHHhcCChHH
Q 037409 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFNTLI------NGLCRTRNTLV 204 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~ 204 (603)
++.....-.+..+..+. ....|..++.++.-.|++..|..+.++..+.. -.|+...+.... ......|..++
T Consensus 125 ~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ 203 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQK 203 (700)
T ss_pred hhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 99988888888776433 55678888888888999999999999887653 246666655443 34456788888
Q ss_pred HHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCCHHHHH-HHH
Q 037409 205 ALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN-SLICGFCCVDDWKEAK-CLF 282 (603)
Q Consensus 205 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~-~~~ 282 (603)
|++.+...... +-.....-..-...+.+.+++++|..++..+..+ .||..-|. .+..++.+-.+.-+++ .+|
T Consensus 204 ale~L~~~e~~----i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly 277 (700)
T KOG1156|consen 204 ALEHLLDNEKQ----IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALY 277 (700)
T ss_pred HHHHHHhhhhH----HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 88887776554 2222333345677888999999999999999987 34555444 4445554333444444 666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-
Q 037409 283 IEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK--G- 359 (603)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~- 359 (603)
....+. .+.....-..=+.......-.+....++..+.+.|+++ ++..+...|-.....+-..++.-.+... |
T Consensus 278 ~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~ 353 (700)
T KOG1156|consen 278 AILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGT 353 (700)
T ss_pred HHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccc
Confidence 665543 11111111111112212222445556777777888764 4445554443322222222222222111 1
Q ss_pred -----------CCCCcch--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 360 -----------CRHDVYS--YNILINANCKDQKVEDAVCLYREMLSERIRPS-VITYNTLLSGLFQVGNLGDALKLIDKM 425 (603)
Q Consensus 360 -----------~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (603)
-+|.... +..++..+-+.|+++.|...++..+.. .|+ +..|..-.+.+...|++++|...+++.
T Consensus 354 ~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea 431 (700)
T KOG1156|consen 354 GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEA 431 (700)
T ss_pred cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 1344433 345667788899999999999998875 333 345556668888999999999999999
Q ss_pred hhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHH----H------HHHHHHhCCChhHHHHHHHHH
Q 037409 426 QLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYN----C------LINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~------l~~~~~~~g~~~~A~~~~~~~ 495 (603)
.+.+ .+|...-..-..-..+.++.++|.++.....+.|. +..... + =+.+|.+.|++..|++-|..+
T Consensus 432 ~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 432 QELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred Hhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8875 34665554566667788999999999988887664 221111 1 134566667777777766665
Q ss_pred hh
Q 037409 496 QH 497 (603)
Q Consensus 496 ~~ 497 (603)
.+
T Consensus 509 ~k 510 (700)
T KOG1156|consen 509 EK 510 (700)
T ss_pred HH
Confidence 54
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.61 E-value=4.8e-11 Score=114.85 Aligned_cols=412 Identities=13% Similarity=0.028 Sum_probs=231.6
Q ss_pred CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH
Q 037409 149 PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN 228 (603)
Q Consensus 149 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (603)
.+..+|..|.-++..+|+++.+.+.|++....- -.....|+.+...+...|....|+.++++...... .+++...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~--~ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE--QPSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc--CCCcchHHH
Confidence 355555555556666666666666666654321 22344566666666666666666666665554321 123333333
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHhhC--C--CCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 037409 229 SIIDGLC-KDGFVDKAKELLLQMKDR--N--INPNVITYNSLICGFCCV-----------DDWKEAKCLFIEMMDNGVQP 292 (603)
Q Consensus 229 ~l~~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~~~~~~~~~ 292 (603)
.....|. +.+..+++++.-.+.... + -...+..|..+.-+|... ....++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333332 344555555544444331 1 111233344444333221 11245556666665553 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 037409 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILIN 372 (603)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (603)
|......+.--|+..++++.|.+..++..+.+...+...|..+.-.+...+++.+|+.+.+.....- ..|-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333344455566666666666666665445555666666666666666666666666555430 001111111111
Q ss_pred HHHhcCChHHHHHHHHHHHhC----------------------------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 373 ANCKDQKVEDAVCLYREMLSE----------------------------RIRPSVITYNTLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (603)
.-...++.++++.....++.. .......++..+.......+ ..+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL--KSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh--hhcccccc-
Confidence 112234444443333222210 01111122222221111100 00000000
Q ss_pred HhhCCCC--CC------HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037409 425 MQLNDVV--PD------SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 425 ~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (603)
+...... |+ ...|......+.+.+..++|...+.+..+.. +.....|...+..+...|.+++|...|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 1111111 22 1234455667788899999998888887754 6677888888888999999999999999999
Q ss_pred hCCCCCCHhHHHHHHHHHHHcCChhHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 497 HKGPIPDVVTCSTMIHWLCKEGQMDKAND--LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 497 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..+|. ++.+..+++.++.+.|+..-|.. ++..+++.+ +.++..|..++..+.+.|+.++|.+.|..+.+....
T Consensus 712 ~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 712 ALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred hcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 97776 77889999999999998887777 999999987 778999999999999999999999999999875443
No 63
>PRK12370 invasion protein regulator; Provisional
Probab=99.57 E-value=2.1e-12 Score=130.13 Aligned_cols=269 Identities=10% Similarity=0.009 Sum_probs=159.2
Q ss_pred CCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCcchHHHHHHHH
Q 037409 77 PSPGMTSFTILLTMLAK-----NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK---------MGITSGAFVVLGRI 142 (603)
Q Consensus 77 ~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~ 142 (603)
+..+..+|...+++... .+++++|+..|+++++.. |.+...+..+..++.. .+++++|...++++
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 33455555555554311 235777777777777664 4445555555544432 23366777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
++..+. +..++..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|+..++++.+.. |.
T Consensus 331 l~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~----P~ 404 (553)
T PRK12370 331 TELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD----PT 404 (553)
T ss_pred HhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CC
Confidence 777544 56677777777777777888888877777663 3345567777777777788888888887777753 22
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 302 (603)
+...+..++..+...|++++|...+++......+-++..+..+..++...|+.++|...+.++.... +.+....+.+..
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~ 483 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYA 483 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHH
Confidence 3333333444556677777777777776654322244456666777777788888887777765541 223334445555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037409 303 YNCKDGKMDKVNRLLELMIQRGV-NPDTVTYNSLMDGFCLVGRISRARELFVSMVSK 358 (603)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 358 (603)
.+...| +.+...++.+.+..- .+....+ +-..+.-.|+.+.+... +++.+.
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 566666 366666665544311 1111112 33345556666665555 666554
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=112.91 Aligned_cols=225 Identities=10% Similarity=-0.015 Sum_probs=137.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
+.+..+|.+.|-+.+|.+-|+..+.. .|-+.||..|-..|.+..++..|+.++.+..+.- +-+........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 44556666666666666666665554 2344555566666666666666666666665531 11333333444555556
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
++.++|.++|+...+.. +.+++...++...|.-.++++.|.++++++++.|.. ++..|+.++-+|...+++|-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 66666666666666654 555666666666666666666666666666666665 6666666666666666666666666
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 528 LDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 528 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
++++...-.|+ ..+|..++......||+..|.+.++-++..+.. +.+.++.|+-.-.+.|++++|+.+++
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~--h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ--HGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc--hHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 66665432333 345666666666666666666666666655443 56666666666666666666666664
No 65
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=6.5e-11 Score=115.48 Aligned_cols=493 Identities=10% Similarity=0.029 Sum_probs=261.6
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 037409 71 CMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPN 150 (603)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 150 (603)
.+...+..|+-++|..+|..|+..|+.+.|- +|.-|.-...+.....++.++......++.+.+. .|.
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3444556678899999999999999999998 9998887777778888899988888888877665 567
Q ss_pred HhhHHHHHHHHHhcCCHhH---HHHHHHHHH----hcCCC-CcHHH-------------HHHHHHHHHhcCChHHHHHHH
Q 037409 151 TVTFNFLINGLCAEGRIME---AARLFKKLN----VFACD-PNVVT-------------FNTLINGLCRTRNTLVALKLF 209 (603)
Q Consensus 151 ~~~~~~l~~~~~~~g~~~~---A~~~~~~~~----~~~~~-~~~~~-------------~~~l~~~~~~~g~~~~A~~~~ 209 (603)
..+|..|..+|...|+... ..+.++.+. ..|+- |.... -...+....-.|-++.+++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998654 222222221 11211 11111 112223333344555555555
Q ss_pred HHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 210 EEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG 289 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 289 (603)
..+.... ... +....++-+... .....++....+...-.|++.+|..++.+-...|+.+.|..++.+|.+.|
T Consensus 163 ~~~Pvsa----~~~--p~~vfLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 163 AKVPVSA----WNA--PFQVFLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred hhCCccc----ccc--hHHHHHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 4443221 001 111112222221 12222333222222114677788888888778888888888888888888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 037409 290 VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNI 369 (603)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
++-+.+-|-.++-+ .++...+..+++-|...|+.|+..|+...+-.+.+.|....+.+ |.+ ....+.+
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~sq-~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GSQ-LAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------ccc-hhhhhhH
Confidence 77777766666654 66777777777777778888888777766665555443222111 111 1111111
Q ss_pred HHHHHHhcC-----Ch-----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCC-CHHh
Q 037409 370 LINANCKDQ-----KV-----EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN--DVVP-DSFT 436 (603)
Q Consensus 370 l~~~~~~~~-----~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~-~~~~ 436 (603)
-+..-.-.| +. .-....+.+..-.|+.....+|...+.. ..+|.-+++..+...+... ...+ +...
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 111111111 11 1111111111112222223334333332 2245555555554444211 1111 1122
Q ss_pred HHHHHHHHHh----------------------CCCHHHHHHHHHHH------------HH----cCCCCC-------hHH
Q 037409 437 FATYIDGLCK----------------------NGFVLEAVQVFQAI------------RN----CKCELR-------IET 471 (603)
Q Consensus 437 ~~~l~~~~~~----------------------~g~~~~a~~~~~~~------------~~----~~~~~~-------~~~ 471 (603)
+..++.-|.+ ..+..+..+..... .. ..+.+- -..
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 2222222111 11111111111111 10 001110 011
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPSEVTFCTLLRGF 549 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 549 (603)
-+.++..+++.-+..+++..-++.... . =...|..|+.-+....+.+.|..+.++..... ...|..-+..+.+.+
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 234445555555555555444444332 1 12567888888888888888888888876432 233555667788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 550 VQNNKKSKVVVLLHKMAAEKLVVS-DLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
.+.+....+.++++++.+.-...+ ...+...+.+.....|+.+.-.+..+
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d 589 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLAD 589 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHH
Confidence 888999999999998876322211 23455556666667777665555443
No 66
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1e-10 Score=108.14 Aligned_cols=443 Identities=14% Similarity=0.032 Sum_probs=230.1
Q ss_pred hhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 037409 55 HKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG 134 (603)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (603)
.+...|+++.|+..|.+++..+|+ |-..|..-..+|++.|++++|++=-.+-++.. |.-+..|+..+.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHH
Confidence 455789999999999999999987 88889999999999999999999888877765 4457789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHH-----HHHHhcCChHHHHHHH
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLI-----NGLCRTRNTLVALKLF 209 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~ 209 (603)
|+..|..-++..+. |...++.+..++. .+.+. +.. ..++..|..+. +.+.....+..-++
T Consensus 89 A~~ay~~GL~~d~~-n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~-- 153 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS-NKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE-- 153 (539)
T ss_pred HHHHHHHHhhcCCc-hHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH--
Confidence 99999999887544 6777887877761 11111 111 11222222221 11111111111111
Q ss_pred HHHHHhcCCccCCChhhH---HHHHHHHHhcCChhHH-HHHHHHHh-hCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHH
Q 037409 210 EEMVNEFGAICKPDVVTY---NSIIDGLCKDGFVDKA-KELLLQMK-DRNINPNVITYNSLICGFCCVDDW-KEAKCLFI 283 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a-~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~ 283 (603)
.+..+ +.+...| ..++.+.......+.- ...-..+. ..+..|... .....-..++. ++.. .
T Consensus 154 --~~~~~----p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~-~-- 220 (539)
T KOG0548|consen 154 --IIQKN----PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERR-V-- 220 (539)
T ss_pred --HhhcC----cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----cCCCCCccchhHHHHH-H--
Confidence 11111 0111111 0111111110000000 00000000 000111000 00000000000 0000 0
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037409 284 EMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHD 363 (603)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (603)
.--..-...+.....+..+++.+.+-+....... -+..-++....+|...|.....+......++.|.. .
T Consensus 221 -------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~ 290 (539)
T KOG0548|consen 221 -------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-L 290 (539)
T ss_pred -------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-H
Confidence 0011122334444444455555555555544443 23333344444455555444444444443333211 0
Q ss_pred cch-------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh
Q 037409 364 VYS-------YNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFT 436 (603)
Q Consensus 364 ~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 436 (603)
... +..+..+|.+.++++.++..|.+.+.....|+. ..+....+++........-.++.. ..-
T Consensus 291 rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e 360 (539)
T KOG0548|consen 291 RADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEE 360 (539)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHH
Confidence 011 111333555566777777777776654333322 222333444444444333222211 111
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
...-...+.+.|++..|+..|.++++.. |.|...|.+...+|.+.|++..|+.-.+..++.++. ....|..-+.++..
T Consensus 361 ~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~ 438 (539)
T KOG0548|consen 361 EREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRA 438 (539)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHH
Confidence 1222455667788888888888877766 667778888888888888888888777777776443 45556656666667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 517 EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
..+|++|.+.|++.++.+ +.+......+.++..
T Consensus 439 mk~ydkAleay~eale~d-p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 439 MKEYDKALEAYQEALELD-PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHH
Confidence 777888888888877764 333444444444443
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.53 E-value=1.4e-09 Score=105.84 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=43.2
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 546 LRGFVQNNKK-SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 546 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
+..+.+..++ ++|.++++-+.+.... +..++..-.++|.+.|++--|++.+++
T Consensus 463 GekL~~t~dPLe~A~kfl~pL~~~a~~--~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 463 GEKLLKTEDPLEEAMKFLKPLLELAPD--NIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCcc--chhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 3444555554 8899999999988775 888999999999999999999988765
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.53 E-value=2.1e-11 Score=123.06 Aligned_cols=251 Identities=11% Similarity=0.014 Sum_probs=183.8
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---------cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 037409 130 GITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA---------EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTR 200 (603)
Q Consensus 130 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (603)
+++++|...+++.++..+. +...|..+..++.. .+++++|...+++..+.. +.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 3467899999999988554 56667666655442 345899999999999874 456778888889999999
Q ss_pred ChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037409 201 NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC 280 (603)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 280 (603)
++++|...|+++++.+ |.+...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|..
T Consensus 353 ~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 353 EYIVGSLLFKQANLLS----PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred CHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHH
Confidence 9999999999999873 556778888999999999999999999999887433 23333444555677899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-
Q 037409 281 LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKG- 359 (603)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 359 (603)
.+++......+.+...+..+..++...|+.++|...++++..... .+....+.+...|...| +.|...++.+.+..
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 999988764233455677788888999999999999998766522 23344555666677777 47777777766641
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037409 360 CRHDVYSYNILINANCKDQKVEDAVCLYREMLSE 393 (603)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 393 (603)
..+....+ +-..+.-.|+.+.+..+ +++.+.
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 12222222 34445556777777666 777665
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.5e-12 Score=110.70 Aligned_cols=234 Identities=12% Similarity=0.001 Sum_probs=198.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (603)
-+.+.++|.+.|-+.+|.+.++..++. .|-+.+|..|-.+|.+..+++.|+.+|.+-++. .+.++....-+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 467888999999999999999999887 567778888999999999999999999988775 33344445566778888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.++.++|.++++...+.... +.....++...|.-.++++.|+.+|++++..| ..+++.|+++.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999999876433 66677777778888899999999999999999 45899999999999999999999999
Q ss_pred HHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 492 FHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 492 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
|++.+..--.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+...++.|+-.-.+.|++++|..+++.+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 999887543343 5678889999999999999999999999876 5677889999999999999999999999998765
Q ss_pred CC
Q 037409 570 LV 571 (603)
Q Consensus 570 ~~ 571 (603)
+.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 43
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.51 E-value=1.7e-11 Score=110.54 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=131.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 037409 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLING 478 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (603)
...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455566666667777777777766655432 234555666666777777777777777776654 4455666677777
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
+...|++++|...++++.+....| ....+..++.++...|++++|...+++..+.. +.+...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777777777777777776642211 34456666777777777777777777777654 4455667777777777788888
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 558 VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
|...++++.+..+ .++..+..++.++...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTYN--QTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8777777776522 45666667777777777777777776654
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.4e-09 Score=95.74 Aligned_cols=299 Identities=11% Similarity=0.046 Sum_probs=194.4
Q ss_pred cCChhHHHHHHHHHhhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 237 DGFVDKAKELLLQMKDR-NINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 237 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
.++...+...+-.+... -++.|+.....+..++...|+..+|+..|++....+ +-+..........+.+.|+.+....
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~ 287 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSA 287 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHH
Confidence 44444444444333322 255577788888888888888888888888877653 2223333344445567788887777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 037409 316 LLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERI 395 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 395 (603)
+...+.... +.+...|..-+.......+++.|+.+-++.++.+ +.+...+-.-...+...+++++|.-.|+......
T Consensus 288 L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La- 364 (564)
T KOG1174|consen 288 LMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA- 364 (564)
T ss_pred HHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-
Confidence 777776542 1123333333444456677888888877777653 2244444444566778888888888888876642
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH-HHHH-hCCCHHHHHHHHHHHHHcCCCCChHHHH
Q 037409 396 RPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI-DGLC-KNGFVLEAVQVFQAIRNCKCELRIETYN 473 (603)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 473 (603)
+-+..+|.-++.+|...|.+.+|...-+...+. ...+..+...+. ..|. ...--++|.++++...+.. |.-....+
T Consensus 365 p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~ 442 (564)
T KOG1174|consen 365 PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVN 442 (564)
T ss_pred hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHH
Confidence 236778888888888888888887776665433 122444444442 2222 2234577888887777654 44456777
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCT 544 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 544 (603)
.+...+...|..++++.++++.+.. .||....+.|+..+...+.+++|.+.|..++..+ |.|..+...
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~G 510 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLRG 510 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHHH
Confidence 7888888888888888888888773 5677788888888888888888888888888765 445444443
No 72
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=6.4e-09 Score=93.05 Aligned_cols=401 Identities=12% Similarity=0.031 Sum_probs=263.1
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhcCCccCCChhhHH
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEFGAICKPDVVTYN 228 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (603)
+...-...+..|...++-+.|+....+..... ...--+.++..+.+ .++..++.--+.+.+.. .+.....
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvre----cp~aL~~-- 166 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRE----CPMALQV-- 166 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHh----cchHHHH--
Confidence 44455556777888888888888877765321 11122333333333 33333444445555443 1222211
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC--VDDWKEAKCLFIEMMDN-GVQPDVVTFNAMINYNC 305 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 305 (603)
|.+..+.+ +..+...=..|-....+|+..+....+.++++ .++...|...+-.+... -++-|+.....+...+.
T Consensus 167 --i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~ 243 (564)
T KOG1174|consen 167 --IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY 243 (564)
T ss_pred --HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh
Confidence 22222211 11111111223333345555555555555543 34444444444333332 25667888999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 306 KDGKMDKVNRLLELMIQRGVNPDT-VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
..|+.+++...|+.....+ |+. .......-.+...|+.+....+...+.... +.....|-.-.......++++.|+
T Consensus 244 ~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL 320 (564)
T KOG1174|consen 244 YNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERAL 320 (564)
T ss_pred hhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHH
Confidence 9999999999999987653 322 222222333457888888888888877652 112233333344455678899999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
.+-++.++.... +...+-.-...+...+++++|.-.|+..+...+ -+...|..|+.+|...|.+.+|...-+...+.-
T Consensus 321 ~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~ 398 (564)
T KOG1174|consen 321 NFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRLF 398 (564)
T ss_pred HHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh
Confidence 999988876433 455566666778899999999999999887542 367899999999999999999998888776642
Q ss_pred CCCChHHHHHHH-HHHHh-CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 037409 465 CELRIETYNCLI-NGLCK-MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 465 ~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
+.+..++..+. ..|.- -.--++|.+++++.+...|. -....+.+...+...|+.++++.++++.+.. .||....
T Consensus 399 -~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH 474 (564)
T KOG1174|consen 399 -QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLH 474 (564)
T ss_pred -hcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHH
Confidence 55666665553 33322 22357899999999886444 3556778888899999999999999999984 6899999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..|+..+...+.+++|.+.|..++..+++
T Consensus 475 ~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 475 NHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999986654
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=8e-09 Score=96.85 Aligned_cols=451 Identities=13% Similarity=0.101 Sum_probs=253.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHH--HHHHHH-
Q 037409 86 ILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNF--LINGLC- 162 (603)
Q Consensus 86 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~- 162 (603)
+=+..+.++|++++|.+...+++.-+ +.|...+.+=+.++++.+.|++|+.+.+.-... .+++. +=.+|+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~------~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL------LVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh------hhcchhhHHHHHHH
Confidence 34556677888888888888888765 666777777777888888888888655432211 11111 233333
Q ss_pred -hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 163 -AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 163 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
+.+..++|+..++-+. +.+..+...-...+.+.|++++|+++|+.+.+.+.. ..+...-..++..-. .-
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d--d~d~~~r~nl~a~~a----~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD--DQDEERRANLLAVAA----AL 159 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHH----hh
Confidence 6788888888887332 223346666677888888999999999888776411 111111111211110 01
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CH-HHHHHHHHHHHhc
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG-------VQP------DV-VTFNAMINYNCKD 307 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~ 307 (603)
.+ .+.+..... ...+...+......++..|++.+|+++++...+.+ -.- .. ..-..+..++-..
T Consensus 160 ~~-~~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~ 237 (652)
T KOG2376|consen 160 QV-QLLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQ 237 (652)
T ss_pred hH-HHHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHh
Confidence 11 122222221 11122233334556677888988888888873221 000 01 1122345566778
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCCHH-HHHHHHHHHHHc-----------CCCCCcchHHHHH
Q 037409 308 GKMDKVNRLLELMIQRGVNPDTVT----YNSLMDGFCLVGRIS-RARELFVSMVSK-----------GCRHDVYSYNILI 371 (603)
Q Consensus 308 ~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~l~ 371 (603)
|+.++|..++...++.... |... .|.++.+-....-++ .++..++..... ...-....-+.++
T Consensus 238 Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL 316 (652)
T KOG2376|consen 238 GQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALL 316 (652)
T ss_pred cchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888887543 4322 222222111111111 122222221111 0000111112233
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC
Q 037409 372 NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLF--QVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF 449 (603)
Q Consensus 372 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (603)
.+| .+..+.+.++-..... ..|. ..+..++.... +...+..+.+++...-+....-...+....++.....|+
T Consensus 317 ~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn 391 (652)
T KOG2376|consen 317 ALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGN 391 (652)
T ss_pred HHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCC
Confidence 333 2333444443333222 1222 33444443322 223577888888877665444445566677777888999
Q ss_pred HHHHHHHHH--------HHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC--CCCCCHh----HHHHHHHHHH
Q 037409 450 VLEAVQVFQ--------AIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK--GPIPDVV----TCSTMIHWLC 515 (603)
Q Consensus 450 ~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~----~~~~l~~~~~ 515 (603)
++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++++.... .-.+... ++..++..-.
T Consensus 392 ~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~l 469 (652)
T KOG2376|consen 392 PEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKL 469 (652)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHH
Confidence 999999998 4444433 3455666777788888888788888776652 1111222 3333444445
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 516 KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
+.|+.++|..+++++.+.+ ++|..+...++.+|++. +.++|..+-+.+
T Consensus 470 r~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 470 RHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 7799999999999999976 78888888898888765 467777665554
No 74
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.48 E-value=3.6e-11 Score=108.43 Aligned_cols=199 Identities=12% Similarity=-0.023 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555555566666666666666555443 334445555555555555555555555555554322 33445555555
Q ss_pred HHhcCCHhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC
Q 037409 161 LCAEGRIMEAARLFKKLNVFAC-DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
+...|++++|.+.+++...... +.....+..+...+...|++++|...+++..... +.+...+..+...+...|+
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID----PQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cCChHHHHHHHHHHHHcCC
Confidence 5555666666666665544211 1122344445555555666666666666655542 2334445555555555566
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM 286 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 286 (603)
+++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 185 ~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 185 YKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66665555555544 22234444444555555555555555554443
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.1e-08 Score=95.88 Aligned_cols=452 Identities=15% Similarity=0.085 Sum_probs=264.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR 198 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (603)
+.+=+..+...|++++|.+...+++..+++ +..++..-+.++.+.+++++|+.+.+.-... ..+.+-+.--.-+..+
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHH
Confidence 333455677889999999999999988744 5666666667788999999999666553211 1111111111223447
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCCHHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC-CVDDWKE 277 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~ 277 (603)
.+..++|+..++-. .+.+..+...-...+.+.|++++|+++|+.+.+.+.+ .+...+.+-+ ..+-...
T Consensus 92 lnk~Dealk~~~~~-------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 92 LNKLDEALKTLKGL-------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAALQ 160 (652)
T ss_pred cccHHHHHHHHhcc-------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhhh
Confidence 89999999999832 2234556677788899999999999999999876432 2222221110 1110011
Q ss_pred HHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHHCC-------CCC------CH-hhHHHHHHHHH
Q 037409 278 AKCLFIEMMDNGVQPDVVTFN---AMINYNCKDGKMDKVNRLLELMIQRG-------VNP------DT-VTYNSLMDGFC 340 (603)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~ 340 (603)
+. +.+ .....| ..+|. ...-.+...|++.+|+++++...+.+ -.. +. .+-..+.-++.
T Consensus 161 ~~-~~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ-LLQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH-HHH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122 222222 22333 33445678899999999999883221 110 11 11233455667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCcch----HHHHHHHHHhcCCh-H-HHHHHHHHHHhCCC----------CCCHhhH-H
Q 037409 341 LVGRISRARELFVSMVSKGCRHDVYS----YNILINANCKDQKV-E-DAVCLYREMLSERI----------RPSVITY-N 403 (603)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~-~-~A~~~~~~~~~~~~----------~~~~~~~-~ 403 (603)
..|+..+|.+++..+++... +|... -|.|+.+ ....++ + .++..++....... ....... +
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999998853 34322 2333322 111111 1 22223322211100 0001111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 037409 404 TLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK--NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481 (603)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (603)
.++..| .+..+.+.++...... ..|.. .+..++..+.+ ......+..++...-+........+...++.....
T Consensus 314 ~lL~l~--tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 314 ALLALF--TNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHH--hhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 222222 2444455554444332 22333 33344443322 22467777777776664433345677778888899
Q ss_pred CCChhHHHHHHH--------HHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHH
Q 037409 482 MGRLKTACKLFH--------RLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK--NCVPS----EVTFCTLLR 547 (603)
Q Consensus 482 ~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~ 547 (603)
.|+++.|.+++. .+.+.+.. +.+...+...+.+.++.+.|..++.+++.. ...+. ..++..++.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999999 55554333 345566667777878777788887777643 00111 223444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.-.+.|+-++|...++++++.++ ++..+...++-+|.+.. .+.|..+-+++
T Consensus 467 f~lr~G~~~ea~s~leel~k~n~--~d~~~l~~lV~a~~~~d-~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFNP--NDTDLLVQLVTAYARLD-PEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhCC--chHHHHHHHHHHHHhcC-HHHHHHHhhcC
Confidence 55678999999999999998666 59999999999998765 66666655544
No 76
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.43 E-value=5.9e-09 Score=103.43 Aligned_cols=186 Identities=11% Similarity=-0.041 Sum_probs=130.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVL 139 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 139 (603)
.+...|...|-+++..++. -...|..|+..|....+...|.+.|+.+.+.+ ..|..........|.+..+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 4567788888888887655 45678888888888888888888888888876 667778888888888888888888874
Q ss_pred HHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 140 GRILRSCFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 140 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
-...+.... .-...|-...-.|...++...|+.-|+...+.. +.|...|..++.+|.+.|++..|+++|.++...+
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-- 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-- 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--
Confidence 333222110 011223334455667788888888888877654 5577788888888888888888888888887642
Q ss_pred ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 037409 219 ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
|.+...---.....+..|.+.+|+..+.....
T Consensus 627 --P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 --PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22222222233345667888888888776654
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-09 Score=101.16 Aligned_cols=239 Identities=12% Similarity=0.013 Sum_probs=171.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH-------
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNT------- 404 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------- 404 (603)
...+.++..+..+++.+++.+....... .+..-++....+|...|.+.++...-....+.|.. ....|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777778888999999999888874 45566677777888888888877777666665432 2222332
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
+..+|.+.++++.++..|.+.......|+.. .+....+++....+...-.+... ..-.-.-+..+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3335666788888999988876554443321 22334444544444433222111 2222223677889999
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
+..|.+.+.+++..+|. |...|.....+|.+.|.+..|+.-.+..++.+ ++....|..=+.++....+|++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 89999999999999999999999999999985 55566777778888888999999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHc
Q 037409 565 MAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
.++.++. +.+....+.+++..
T Consensus 452 ale~dp~--~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 452 ALELDPS--NAEAIDGYRRCVEA 472 (539)
T ss_pred HHhcCch--hHHHHHHHHHHHHH
Confidence 9987754 66776666666654
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.42 E-value=3.8e-10 Score=104.10 Aligned_cols=218 Identities=13% Similarity=-0.006 Sum_probs=159.5
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 60 ITSNEAVYFFDCMIKMK---PSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
+..+.++..+.+++... |......|..++..+.+.|++++|...|+++++.. |.++..++.++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 46678889999998643 33335678889999999999999999999999886 667889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc
Q 037409 137 VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 216 (603)
..|+++++..+. +..+|..+...+...|++++|.+.|++..+. .|+..............++.++|...|++.....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999988654 5678888888999999999999999999876 4443322222233445778999999997766542
Q ss_pred CCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 217 GAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR---NI---NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG 289 (603)
Q Consensus 217 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 289 (603)
+++...+ .......|+...+ +.+..+.+. .. +.....|..+...+.+.|++++|...|++....+
T Consensus 196 ----~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 ----DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ----CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2332222 2223345665544 344444321 11 1123578888888888888888888888888765
No 79
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.41 E-value=2.5e-09 Score=104.69 Aligned_cols=465 Identities=13% Similarity=0.105 Sum_probs=276.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 102 SLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
.++-.+...|+.|+..+|..++..|+..|+.+.|- +|..|.-.....+..+++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777899999999999999999999999998 9998888877778889999999888888876665
Q ss_pred CCCcHHHHHHHHHHHHhcCChHH---HHHHHHHHHHhcC---Cc------------cCCChhhHHHHHHHHHhcCChhHH
Q 037409 182 CDPNVVTFNTLINGLCRTRNTLV---ALKLFEEMVNEFG---AI------------CKPDVVTYNSIIDGLCKDGFVDKA 243 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~---~~------------~~~~~~~~~~l~~~~~~~g~~~~a 243 (603)
.|...+|..|..+|.+.||... ..+.++.+..... .+ .+.....-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 6788899999999999998654 3333333332210 00 000001112233334445556666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCC-VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ 322 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 322 (603)
++++..+...... .+... +++-+.. ...+++-....+...+ .|++.++..++..-...|+++.|..++..|.+
T Consensus 159 lkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 6666555433111 11111 2333322 2334444444444443 58999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 037409 323 RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITY 402 (603)
Q Consensus 323 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 402 (603)
.|.+.+..-|-.|+-+ .++...++.++.-|...|+.|+..|+...+..+.++|....+.. + .+....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~-sq~~hg~ 300 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------G-SQLAHGF 300 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------c-cchhhhh
Confidence 9998888766666544 78888899999999999999999999888877777554222211 1 1222223
Q ss_pred HHHHHHHHhcC-----CH-----HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCCh
Q 037409 403 NTLLSGLFQVG-----NL-----GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---ELRI 469 (603)
Q Consensus 403 ~~l~~~~~~~~-----~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~ 469 (603)
++-...-.-.| +. .-....+++..-.|+......|.... -...+|.-++..++-..+..... +.++
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V 379 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNV 379 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchH
Confidence 33332222223 11 11122222222223333333343332 23346666666666655543111 2233
Q ss_pred HHHHHHHHHHHhCC----------------------ChhHHHHHHHHHhhC-C---------------CCC-------CH
Q 037409 470 ETYNCLINGLCKMG----------------------RLKTACKLFHRLQHK-G---------------PIP-------DV 504 (603)
Q Consensus 470 ~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~-~---------------~~p-------~~ 504 (603)
..+..++.-|.+.- +..+..+++...... + ..| -.
T Consensus 380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 44444444433221 111222222211100 0 000 01
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCCHHHHHHHH
Q 037409 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK--LVVSDLSLSSKVV 582 (603)
Q Consensus 505 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~ 582 (603)
..-+.++..++..-+..+++..-++....-+ + ..|..|+.-+....+.+.|..+..+..... .. -+...+..+.
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~-Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIH-LDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhh-cccHhHHHHH
Confidence 1123444445555555555544444443322 1 567788888888888888888888876422 22 3455678888
Q ss_pred HHHHcCCcHHHHHHHHHhh
Q 037409 583 DLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~~~~~ 601 (603)
+.+.+-+...++..+++.+
T Consensus 536 dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhh
Confidence 9999999999998888764
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.40 E-value=3.9e-08 Score=95.89 Aligned_cols=46 Identities=13% Similarity=0.096 Sum_probs=38.0
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
.=.++|.++++.+.+.+ +.+..+|..-...|.+.|++-.|++.+++
T Consensus 471 dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 471 DPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 35588999999999876 66788899999999999999888877664
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=1.6e-10 Score=110.79 Aligned_cols=166 Identities=14% Similarity=0.060 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-hHHHHHHHHHHHhCCChhHHHHHHHHHhhC---CCCCC--
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNC-----K-CELR-IETYNCLINGLCKMGRLKTACKLFHRLQHK---GPIPD-- 503 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~-- 503 (603)
++..|..+|.+.|++++|...++++.+. + ..+. ...++.++..|...+++++|..++++..+. -+.++
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 3444444555555555555555444321 0 0111 123445555555666666666666554431 11111
Q ss_pred --HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCC
Q 037409 504 --VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----N-CVP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMA----AEKL 570 (603)
Q Consensus 504 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~ 570 (603)
..+++.|...|...|++++|.+++++++.. | ..+ ....+..++..|.+.+++++|.++|.+.. ..|+
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 345666666666666666666666666543 1 011 13345566666666666666666555543 2233
Q ss_pred CCCC-HHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 571 VVSD-LSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 571 ~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
..|+ ..+|..|+..|.+.|++++|.++.+++
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 3222 345666666666666666666666554
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=1.1e-09 Score=90.42 Aligned_cols=198 Identities=13% Similarity=-0.015 Sum_probs=150.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
..|.-.|.+.|+...|..-+++.++.++. +..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|....-+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhC
Confidence 34556677888888888888888776433 5667777888888888888888888888776543 556777777778888
Q ss_pred CCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCK-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDL 526 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 526 (603)
|.+++|...|++..... ......+|.+++-+..+.|+++.|...|++.++.++. ...+...+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 88888888888877632 2334567888888888888888888888888887665 556677788888888888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 527 LLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++.....+ .++...+...++.--..|+.+.+.++=.++.+.-
T Consensus 196 ~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 196 LERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888776 4788887777888888888887777766666543
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=7.9e-10 Score=91.16 Aligned_cols=195 Identities=15% Similarity=0.037 Sum_probs=167.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (603)
+...+.-.|...|+...|..-+++.++.++. +..++..+...|.+.|..+.|.+.|++..+.. +.+..+.|+....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 3455667899999999999999999987543 66788888899999999999999999999877 678899999999999
Q ss_pred hCCChhHHHHHHHHHhhCCC-CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGP-IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
..|++++|...|++....-. .-...+|..++.+..+.|+.+.|...|++.++.. +..+.....+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 99999999999999997521 1135689999999999999999999999999985 556778889999999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.++++....+. ++.+.....+.+--..|+-+.|-++=.+
T Consensus 194 ~~~~~~~~~~~--~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 194 LYLERYQQRGG--AQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHhccc--ccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999987765 5888888888888899998888766443
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=7.1e-07 Score=87.26 Aligned_cols=230 Identities=16% Similarity=0.103 Sum_probs=153.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcC
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN--------GLFPDLFVLNLLINCLCKMG 130 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g 130 (603)
.|+.|.|.+...-+ .+...|..+.+.+.+..+.+-|.-.+-.|... ....+..+-..+.......|
T Consensus 741 iG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred eccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 58889888877765 25678999999999999888887666554321 11111133444555567889
Q ss_pred CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 037409 131 ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFE 210 (603)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (603)
-.++|..+|.+..+. ..|=..|...|.+++|.++-+.-.+.. =..||.....-+-..++.+.|++.|+
T Consensus 815 MlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 815 MLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHH
Confidence 999999999887654 234455677899999999877644322 12466666777777889999999887
Q ss_pred HHH----------HhcCC------ccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 211 EMV----------NEFGA------ICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 211 ~~~----------~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
+.. ..+.+ ....|...|.--...+...|+.+.|+.+|...++ |.++++..|-.|+
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk 953 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGK 953 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccC
Confidence 642 11100 0011233333344445556777777777766554 5566677777888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
.++|-.+-++- -|......+.+.|-..|++.+|...|.+..
T Consensus 954 ~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 954 TDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred chHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88887776553 266677788888888888888888887654
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.32 E-value=2.6e-09 Score=98.58 Aligned_cols=237 Identities=12% Similarity=-0.046 Sum_probs=132.5
Q ss_pred CHHHHHHHHHHHHHcC-CCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 344 RISRARELFVSMVSKG-CRH--DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALK 420 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 420 (603)
..+.++..+.+++... ..| ....|..+...|...|+.++|...|++.++..+ .+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555431 111 123455566666777777777777777766533 256667777777777777777777
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
.|+...+..+. +...+..+..++...|++++|.+.++...+.. +.+.. .......+...++.++|...|.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-PNDPY-RALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777664333 34556666666777777777777777776644 22321 1111222334566777777776554321
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK---NC---VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD 574 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 574 (603)
.|+ .|. ........|+..++ +.++.+.+. .. +.....|..++..+.+.|++++|+..|+++++.++. ..
T Consensus 196 ~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~-~~ 270 (296)
T PRK11189 196 DKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY-NF 270 (296)
T ss_pred Ccc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-hH
Confidence 122 122 12233344555443 234444321 00 112346777777778888888888888887776553 34
Q ss_pred HHHHHHHHHHHHcCCc
Q 037409 575 LSLSSKVVDLLSKDKK 590 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~ 590 (603)
.++...++......++
T Consensus 271 ~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 271 VEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4555555554444333
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.32 E-value=4.1e-08 Score=97.71 Aligned_cols=478 Identities=12% Similarity=-0.024 Sum_probs=285.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFK 175 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 175 (603)
+...|+..|-+.++.+ +.-...|..++..|+..-+..+|.+.|+.+...+.. +...+......|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4677777777777665 334557888888888888888999999999888654 77788888999999999999988843
Q ss_pred HHHhcC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 037409 176 KLNVFA-CDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN 254 (603)
Q Consensus 176 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 254 (603)
...+.. ...-...|....-.+...++...|+..|+...+. .|.|...|..++.+|.++|++..|.++|.+....
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~----dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L- 625 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT----DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL- 625 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC----CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence 332221 0011223455566677888999999999999886 4678889999999999999999999999888765
Q ss_pred CCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----
Q 037409 255 INPNVITYNS--LICGFCCVDDWKEAKCLFIEMMDNG------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ---- 322 (603)
Q Consensus 255 ~~~~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 322 (603)
.|+ ..|.. ....-+..|.+.+|+..+....... ..--..++..+...+.-.|-..++...++..++
T Consensus 626 -rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 -RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred -CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 222 22322 2334457788999998888776431 011122333333333334433344444433322
Q ss_pred ---CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh---H---HHHHHHHHHHhC
Q 037409 323 ---RGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV---E---DAVCLYREMLSE 393 (603)
Q Consensus 323 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~ 393 (603)
+....+...|..+..+ ..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-+.
T Consensus 704 ~l~h~~~~~~~~Wi~asda----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls- 770 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDA----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS- 770 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHH----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH-
Confidence 2111122222222222 22222221 00 11111111111111111111 1 11111111111
Q ss_pred CCCCCHhhHHHHHHHHHh----c----CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 037409 394 RIRPSVITYNTLLSGLFQ----V----GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC 465 (603)
Q Consensus 394 ~~~~~~~~~~~l~~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 465 (603)
...+..+|..++..|.+ . .+...|+..+++..+.. ..+..+|+.|.-. ...|++.-+.-.|-.-....
T Consensus 771 -l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se- 846 (1238)
T KOG1127|consen 771 -LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE- 846 (1238)
T ss_pred -HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-
Confidence 11234445444444333 1 22346777777766543 2255666666544 55577777766665544433
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH--HH--CCCCCCHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM--EA--KNCVPSEVT 541 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~--~~~~~~~~~ 541 (603)
+....+|.++.-.+.+..+++-|...|...+...|. |...|-.........|+.-++..+|..- .. .|--++..-
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Y 925 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQY 925 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhH
Confidence 556778888888888999999999999999887665 7777777777777888888888877662 22 233445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH----------HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMA----------AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|.........+|+.++-+...+++. ...+ .....|...+..+-+.+.+++|.+...+++
T Consensus 926 w~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p--~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP--QLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc--chhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5555555667777766555444433 3333 466778888888888888888888877653
No 87
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.32 E-value=1e-09 Score=105.25 Aligned_cols=241 Identities=18% Similarity=0.116 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHC-----C-CCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhc-----C-CC
Q 037409 117 FVLNLLINCLCKMGITSGAFVVLGRILRS-----C-FTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVF-----A-CD 183 (603)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~ 183 (603)
.+...+...|...|+++.|..++++.++. | ..|.+. ..+.+...|...+++.+|..+|+++... | ..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35555666777777777777777666554 1 112222 2334666777777777777777776432 2 11
Q ss_pred Cc-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC---ccCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHhhC---CC
Q 037409 184 PN-VVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA---ICKPDV-VTYNSIIDGLCKDGFVDKAKELLLQMKDR---NI 255 (603)
Q Consensus 184 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 255 (603)
|. ..+++.|..+|.+.|++++|..+++.+.+.... ...+.+ ..++.++..+...+++++|..++....+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 234666667777777777777776665543211 122333 23556677777777777777777655432 11
Q ss_pred CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 037409 256 NP----NVITYNSLICGFCCVDDWKEAKCLFIEMMDNG-------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQ-- 322 (603)
Q Consensus 256 ~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 322 (603)
.+ -..+++.|...|...|++++|.+++++.+... ..-....++.+...|.+.+.+.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 11 23567778888888888888888887766431 111234567777777777777777777766543
Q ss_pred --CCC--CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 323 --RGV--NPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 323 --~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
.|+ +-...+|..|...|...|+++.|+++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 222 22346678888888888888888888877764
No 88
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.1e-06 Score=87.77 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=23.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 306 KDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 306 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
+.++..--..+++..+..|.. |+.+++.+...|..+++
T Consensus 850 kRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 850 KRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred hhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 334444445555666666655 77777777777765543
No 89
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.31 E-value=1.7e-08 Score=97.26 Aligned_cols=195 Identities=10% Similarity=-0.034 Sum_probs=101.0
Q ss_pred hhhhhhccCCCHHHHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 51 LNDRHKSGNITSNEAVYFFDCMIKMKPSP-G-MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 51 l~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
..+.+....|+.++|...+....+..+.. + ..........+...|++++|...++++.+.. |.+...+.. ...+..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~ 88 (355)
T cd05804 11 AAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFG 88 (355)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHH
Confidence 33333334456666666666665544321 1 1222333444566777777777777776653 334433332 222222
Q ss_pred c----CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH
Q 037409 129 M----GITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLV 204 (603)
Q Consensus 129 ~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (603)
. +..+.+.+.+...... ..........+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++
T Consensus 89 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 89 LGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred hcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 2 3333333333321111 11122233344556666777777777777766653 3344556666666777777777
Q ss_pred HHHHHHHHHHhcCCccCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 205 ALKLFEEMVNEFGAICKPDV--VTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 205 A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
|...+++....... .++. ..|..+...+...|++++|..++++..
T Consensus 167 A~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 167 GIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 77777766654210 1121 234456666666777777777776654
No 90
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=2.2e-07 Score=89.55 Aligned_cols=131 Identities=11% Similarity=0.044 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|.++.|+..|-++. .....+.+.....+|.+|+.+++.+..+. .-...|..+...|...|+++.|.++
T Consensus 719 ~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~l 787 (1636)
T KOG3616|consen 719 IGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEEL 787 (1636)
T ss_pred HHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHH
Confidence 456666666665541 12334556667788999999999887663 3445677788899999999999998
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEE 211 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (603)
|-+. ..++-.|.+|.+.|++++|.++-++... .....+.|.+-..-+-..|++.+|.++|-.
T Consensus 788 f~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 788 FTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 8643 3456678899999999999999887653 233445565555666667777776666543
No 91
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=2.7e-08 Score=85.23 Aligned_cols=290 Identities=15% Similarity=0.100 Sum_probs=152.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHH-HHHHHHh
Q 037409 85 TILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNF-LINGLCA 163 (603)
Q Consensus 85 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~ 163 (603)
.+++..+.+..++.+|++++..-.+.. +.+...++.+.-+|....++..|...++++....+ ...-|.. -...+.+
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P--~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP--ELEQYRLYQAQSLYK 90 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHHHHHHH
Confidence 344555556666666666666655553 33455566666666666666666666666655422 2222221 2344455
Q ss_pred cCCHhHHHHHHHHHHhcCCCCcHHHHHHHH--HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 164 EGRIMEAARLFKKLNVFACDPNVVTFNTLI--NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
.+.+.+|+++...|... ++...-..-+ ......+++..+..+.++.... .+..+.+.......+.|+++
T Consensus 91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e------n~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE------NEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC------CccchhccchheeeccccHH
Confidence 66666666666665421 1111111111 2223455666666665555432 23334444444555666666
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------C---------------
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQP-------------D--------------- 293 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------------~--------------- 293 (603)
.|.+-|+...+-+--.....|+..+. ..+.+++..|++...+++++|++. |
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 66666666655432223344444333 335566666666666666654321 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQR-GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILIN 372 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (603)
+..+|.-...+.+.++++.|.+.+-.|..+ ....|+.|...+.-. -..+++....+-+.-++..+. ....+|..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 112233334455677777777777666433 223455554443321 123445555555666665532 34567777777
Q ss_pred HHHhcCChHHHHHHHHH
Q 037409 373 ANCKDQKVEDAVCLYRE 389 (603)
Q Consensus 373 ~~~~~~~~~~A~~~~~~ 389 (603)
.||+..-++.|..++.+
T Consensus 319 lyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhhhHHHhHHHHHHhh
Confidence 78887777777776654
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.25 E-value=7.1e-08 Score=92.91 Aligned_cols=197 Identities=10% Similarity=-0.027 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 260 ITYNSLICGFCCVDDWKEAKCLFIEMMDNGV-QPDVV-TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMD 337 (603)
Q Consensus 260 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
..|..+...+...|+.+.+...+....+... .++.. ........+...|++++|...+++..+..+. +...+.. ..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hH
Confidence 4455555555556666665555555443321 11211 1112223345566666676666666655322 2222221 11
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 338 GFCL----VGRISRARELFVSMVSKGCRHD-VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 338 ~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+.. .+..+.+.+.+.... ...|+ ......+...+...|++++|...+++..+..+. +...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWA--PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhccC--cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 1111 233333333333211 11111 122233344555566666666666666554322 344455555556666
Q ss_pred CCHHHHHHHHHHHhhCCCC-CCH--HhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 413 GNLGDALKLIDKMQLNDVV-PDS--FTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
|++++|...+++....... |+. ..+..+...+...|++++|..+++++.
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6666666666655443211 111 123344555556666666666666554
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.3e-06 Score=87.43 Aligned_cols=187 Identities=14% Similarity=0.237 Sum_probs=124.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 374 NCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 374 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
....+-+++|..+|++.- .+....+.++. ..+..+.|.+.-++.. .+..|..+..+-.+.|...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334445566666665432 13333333333 2344555555444332 456788888888888888888
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+-|-+ ..|+..|..+++...+.|.+++-.+++...++..-+|... ..|+.+|++.++..+-++++.
T Consensus 1124 ieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1124 IESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred HHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-----
Confidence 776533 3467788889999999999999999888888765555443 477888888888777555432
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 534 NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 534 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
-|+......++.-|...|.++.|.-+|... .-|..++..+...|.++.|.+.-+
T Consensus 1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v----------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSNV----------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred --CCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 478888888888888888888777666432 335566666666677766665443
No 94
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=2.2e-06 Score=93.77 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAK----NCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+..++...|++++|...++++... |...+ ..+...++.++.+.|+.++|...+.++++
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334444445555555555444432 11111 12233444444555555555555555544
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=3.9e-08 Score=84.29 Aligned_cols=351 Identities=15% Similarity=0.135 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHH-HHHHHH
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNT-LINGLC 197 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 197 (603)
+.+++..+.+..+++.|++++..-.+..++ +......|...|....++..|-..++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 455666667777788888887776665332 5556667777777788888888888887664 555555443 345666
Q ss_pred hcCChHHHHHHHHHHHHhcCCccCCCh--hhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 037409 198 RTRNTLVALKLFEEMVNEFGAICKPDV--VTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275 (603)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (603)
+.+.+..|+++...+... ++. .+...-.......+++..+..+.++....| +..+.+.......+.|++
T Consensus 90 ~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 778888888887777542 111 111112223345677777777777766432 445555556666678888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHHhcCCHHHHHHH
Q 037409 276 KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVT----YNSLMDGFCLVGRISRAREL 351 (603)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~ 351 (603)
+.|.+-|....+-+--.....|+..+ +..+.++++.|.+...+++++|++..+.. ....+++ ...|+ -..+
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~l 235 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVL 235 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccc---hHHH
Confidence 88888887776653222344455443 34456778888888888877765422211 0001110 00011 0000
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER-IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV 430 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (603)
.... -+..+|.-...+.+.++.+.|.+.+.+|..+. ...|++|...+.-. ...+++.+..+-+.-+....+
T Consensus 236 h~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 236 HQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC
Confidence 0000 11223334445667788888888777775432 23355665554322 223445555555555555444
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChHHHHHHHHHHHh-CCChhHHHHHHHHHh
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCE-LRIETYNCLINGLCK-MGRLKTACKLFHRLQ 496 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 496 (603)
- ...||..++-.||+..-++.|-.++.+-...... .+...|+ |+.++.. .-..++|.+-++.+.
T Consensus 308 f-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 F-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHH
Confidence 3 3457777777888888888887776543221111 1222332 3333333 345666666555443
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.21 E-value=5.7e-07 Score=86.85 Aligned_cols=429 Identities=15% Similarity=0.103 Sum_probs=187.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh--------------------CC-CCCCHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNS--------------------NG-LFPDLF 117 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------------~~-~~~~~~ 117 (603)
.|+++.|..+++.. ..+|. ....|..+.......|+.--|.+.|..+-. -| -..+.+
T Consensus 457 ~~df~ra~afles~-~~~~d-a~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~fy 534 (1636)
T KOG3616|consen 457 DGDFDRATAFLESL-EMGPD-AEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDFY 534 (1636)
T ss_pred cCchHHHHHHHHhh-ccCcc-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHH
Confidence 58899998888764 33332 344588777777777776666665553311 11 011111
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH-HHHHHHHHHH
Q 037409 118 VLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV-VTFNTLINGL 196 (603)
Q Consensus 118 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~ 196 (603)
-...++. .-..++.+|..+|-+- | .-...+.+|....++++|+.+-+.. | .|.. ..-.+.++++
T Consensus 535 kvra~la--il~kkfk~ae~ifleq-------n--~te~aigmy~~lhkwde~i~lae~~---~-~p~~eklk~sy~q~l 599 (1636)
T KOG3616|consen 535 KVRAMLA--ILEKKFKEAEMIFLEQ-------N--ATEEAIGMYQELHKWDEAIALAEAK---G-HPALEKLKRSYLQAL 599 (1636)
T ss_pred HHHHHHH--HHHhhhhHHHHHHHhc-------c--cHHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHHHHHHHHHH
Confidence 1111221 1122444554444221 0 1122345555566666666654432 2 2322 2233455566
Q ss_pred HhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH
Q 037409 197 CRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWK 276 (603)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 276 (603)
...|+-++|-++- .. +..+ .+.|..|.+.|.+..|.+....-.. ...|......+..++.+..-++
T Consensus 600 ~dt~qd~ka~elk----~s-------dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 600 MDTGQDEKAAELK----ES-------DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HhcCchhhhhhhc----cc-------cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHH
Confidence 6666666554331 11 1111 2456777888877776654321111 1224444444445555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------C--------CHhhHH
Q 037409 277 EAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN---------------P--------DTVTYN 333 (603)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------~--------~~~~~~ 333 (603)
+|-++|+++.+ | ...+..|-+-.-+.+|.++-+-.....+. . ......
T Consensus 666 kagdlfeki~d----~-----dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 666 KAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 55555555432 1 11122222222233333332221100000 0 000011
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG 413 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (603)
..+.+.....+|.+|+.+++.+..+. .-..-|..+...|...|+++.|.++|.+.- .++-.|..|.+.|
T Consensus 737 kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 737 KAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 12223333444555555555444431 122223444445555555555555554321 1333444555555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFH 493 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (603)
+|+.|.++-.+.. |+......|..-.+-+-.+|++.+|.++|-.+. .|+. .|..|-+.|..+..+++.+
T Consensus 806 kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 806 KWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred cHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence 5555555544332 122223333333344445555555555543221 2221 2334555555555555444
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 494 RLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL 561 (603)
Q Consensus 494 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (603)
+-... .-..|...+..-+...|+...|...|-++.+ |...++.|-.++.|++|.++
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 43221 1122344445555555666665555544322 33444455555555555443
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.20 E-value=1.6e-06 Score=76.19 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=38.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (603)
..|+...|++....+++.. +.|...+..-..+|...|++..|+.-++...+.... +..++..+-..+...|+.+.++.
T Consensus 167 ~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~ 244 (504)
T KOG0624|consen 167 GSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLK 244 (504)
T ss_pred cCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHH
Confidence 3444444444444444432 234444444444455555555554444444333222 22333333444444555555555
Q ss_pred HHHHHHHc
Q 037409 351 LFVSMVSK 358 (603)
Q Consensus 351 ~~~~~~~~ 358 (603)
..++.++.
T Consensus 245 ~iRECLKl 252 (504)
T KOG0624|consen 245 EIRECLKL 252 (504)
T ss_pred HHHHHHcc
Confidence 55444443
No 98
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.19 E-value=5.7e-06 Score=82.23 Aligned_cols=495 Identities=14% Similarity=0.098 Sum_probs=227.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.+++..|.+..++.+...|+ ...+-..-.-.+.+.|+.++|..+++.....+ ..|..+...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 45667777777777776554 22222222223467777777776666665554 34667777777777777777777777
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CCh---------HHHHHH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT-RNT---------LVALKL 208 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~---------~~A~~~ 208 (603)
|+++... .|+......+..+|.+.+.+.+-.++--++-+. ++.+...+=+++..+.+. ... .-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 7777766 344666666666677766655433333333221 122222222233333221 111 123444
Q ss_pred HHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHH-HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 209 FEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL-LQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
++.+.+..| .-.+..-.......+...|.+++|++++ ....+.-.+-+...-+.-+..+...++|.+..++-.++..
T Consensus 177 ~~~~l~~~g--k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 177 VQKLLEKKG--KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHhccCC--ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 444444321 1111222222333444556666666665 2232322222333334445555566666666666655555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.| +|. |...+.. +++-+......| ... .+...+..+...+..++..... ....|
T Consensus 255 k~--~Dd--y~~~~~s------------v~klLe~~~~~~-a~~------~~s~~~~l~~~~ek~~~~i~~~---~Rgp~ 308 (932)
T KOG2053|consen 255 KG--NDD--YKIYTDS------------VFKLLELLNKEP-AEA------AHSLSKSLDECIEKAQKNIGSK---SRGPY 308 (932)
T ss_pred hC--Ccc--hHHHHHH------------HHHHHHhccccc-chh------hhhhhhhHHHHHHHHHHhhccc---ccCcH
Confidence 53 121 2211111 111111111111 100 0111222333333333332221 11112
Q ss_pred HHHHHH---HHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--HH---hHHH
Q 037409 368 NILINA---NCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD--SF---TFAT 439 (603)
Q Consensus 368 ~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~---~~~~ 439 (603)
-+-+.+ +..-|+.+++...|-+-.. +...|..=+..|...=..+.-..++........... .. .+.+
T Consensus 309 LA~lel~kr~~~~gd~ee~~~~y~~kfg-----~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c 383 (932)
T KOG2053|consen 309 LARLELDKRYKLIGDSEEMLSYYFKKFG-----DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLC 383 (932)
T ss_pred HHHHHHHHHhcccCChHHHHHHHHHHhC-----CCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 222222 2234666665544432211 111122222222222233333333333322110000 00 0111
Q ss_pred HHHHHHhCCC-----HHHHHHHHHHHH---HcC------CCCC---------hHHHHHHHHHHHhCCChh---HHHHHHH
Q 037409 440 YIDGLCKNGF-----VLEAVQVFQAIR---NCK------CELR---------IETYNCLINGLCKMGRLK---TACKLFH 493 (603)
Q Consensus 440 l~~~~~~~g~-----~~~a~~~~~~~~---~~~------~~~~---------~~~~~~l~~~~~~~g~~~---~A~~~~~ 493 (603)
.+..-...|. -+.-..++++.. ..| .-|+ ..+-+.|++.+.+.++.. +|+-+++
T Consensus 384 ~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE 463 (932)
T KOG2053|consen 384 VLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLE 463 (932)
T ss_pred HHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1111111221 122223332222 111 1112 123466778888887654 5666666
Q ss_pred HHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 494 RLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS 573 (603)
Q Consensus 494 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 573 (603)
.-....+. |..+--.+++.|.-.|-+..|.++++.+--+++..|...+ .+...+...|++.-+...++...+.--. .
T Consensus 464 ~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t~g~~~~~s~~~~~~lkfy~~-~ 540 (932)
T KOG2053|consen 464 NGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAETSGRSSFASNTFNEHLKFYDS-S 540 (932)
T ss_pred HHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHhcccchhHHHHHHHHHHHHhh-h
Confidence 66665444 6666667888888889999999999988777666554443 2344566788898888888887653211 2
Q ss_pred CHHHHHHHHHHHHcCCcHHHHH
Q 037409 574 DLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
..++-..++.+ .+.|.+..-.
T Consensus 541 ~kE~~eyI~~A-Yr~g~ySkI~ 561 (932)
T KOG2053|consen 541 LKETPEYIALA-YRRGAYSKIP 561 (932)
T ss_pred hhhhHHHHHHH-HHcCchhhhH
Confidence 22333333333 3455555433
No 99
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1.9e-08 Score=94.42 Aligned_cols=228 Identities=16% Similarity=0.113 Sum_probs=171.1
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
+|-.++.+-..|++.+|.-.|+.+...+|. ++.+|..|+.....+++-..|+..+++.++.+ |.+..++..|...|..
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytN 365 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTN 365 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhh
Confidence 477777777789999999999999988876 88999999999999999999999999999887 7778888889999999
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHH---------HHHHhcCCHhHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHh
Q 037409 129 MGITSGAFVVLGRILRSCFTPNTVTFNFLI---------NGLCAEGRIMEAARLFKKLN-VFACDPNVVTFNTLINGLCR 198 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 198 (603)
.|.-..|...++.-+...++ ..|.... ..+.....+....++|-++. ..+..+|..+...|.-.|.-
T Consensus 366 eg~q~~Al~~L~~Wi~~~p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 366 EGLQNQALKMLDKWIRNKPK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhHHHHHHHHHHHHHhCcc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99888899988887665322 0000000 00111112233344444443 33334677788888888888
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhcCCHHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN-VITYNSLICGFCCVDDWKE 277 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~ 277 (603)
.|++++|++.|+.++.. -|.|...||-|...++...+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++
T Consensus 443 s~efdraiDcf~~AL~v----~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykE 516 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQV----KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKE 516 (579)
T ss_pred chHHHHHHHHHHHHHhc----CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHH
Confidence 89999999999988886 3567788888888888888889999999888875 443 4566667777888888888
Q ss_pred HHHHHHHHHH
Q 037409 278 AKCLFIEMMD 287 (603)
Q Consensus 278 A~~~~~~~~~ 287 (603)
|.+.|-..+.
T Consensus 517 A~~hlL~AL~ 526 (579)
T KOG1125|consen 517 AVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 100
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=1.1e-10 Score=74.56 Aligned_cols=47 Identities=45% Similarity=0.788 Sum_probs=19.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYN 304 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (603)
|..+||+++.+|++.|++++|.++|++|.+.|++||..||+.++.+|
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444433
No 101
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=2.7e-07 Score=80.84 Aligned_cols=199 Identities=13% Similarity=0.042 Sum_probs=139.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh-hHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTV-TFNFLI 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 158 (603)
++.-..-+...+..+|++.+|+.-|..+++.+ +.+-.++..-...|...|+-..|+.=+.++++. +||-. +-..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34445567778888899999999988888653 333335555667888889888888888888887 44422 222234
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHH----HH------------HHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVV----TF------------NTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
..+.+.|.+++|..-|+.+... .|+.. .+ ...+..+...|+...|++....+++. .+.
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~W 187 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPW 187 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----Ccc
Confidence 5677889999999999888876 33211 11 12233445578888888888888876 466
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
|...|..-..+|...|++..|+.-++...+... .+...+.-+-..+...|+.+.++...++.++.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 777777788888888888888877776665532 25566666777777888888888888888775
No 102
>PF13041 PPR_2: PPR repeat family
Probab=99.16 E-value=9.7e-11 Score=74.86 Aligned_cols=50 Identities=52% Similarity=0.927 Sum_probs=41.7
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 037409 222 PDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC 271 (603)
Q Consensus 222 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (603)
||..+|++++.+|++.|++++|.++|++|.+.|++||..||+.+++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67788888888888888888888888888888888888888888888764
No 103
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=7.4e-06 Score=80.48 Aligned_cols=53 Identities=8% Similarity=0.034 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 519 QMDKANDLLLDMEAKNCVPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..+.++-...|++....|+ ...|..|+..+....+|..|-+.++++.++-+.
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCc
Confidence 55556666666666533332 456888899999999999999999999876554
No 104
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.14 E-value=4.6e-09 Score=95.20 Aligned_cols=250 Identities=14% Similarity=0.084 Sum_probs=129.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.... .|.......+...+...++-+.++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34555555554443 111111112233344555666666655433 2222222 344444433333333223444444
Q ss_pred HHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 385 CLYREMLSERIRP-SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 385 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
.-+++.......+ +..........+...|++++|+++++.. .+.......++.+.+.++++.|.+.++.|.+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4444433332221 2222222233455667777777766542 24455556677777777777777777777654
Q ss_pred CCCCChHHHHHHHHHHHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 464 KCELRIETYNCLINGLCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
+ +..+...++.++.. .+.+.+|..+|+++.+. ..+++.+++.++.++...|++++|.++++++++.+ +.++
T Consensus 161 ~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~ 235 (290)
T PF04733_consen 161 D---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDP 235 (290)
T ss_dssp S---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHH
T ss_pred C---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCH
Confidence 3 22333333333322 23577788888777665 34567777777777777888888888777777654 4456
Q ss_pred HHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCC
Q 037409 540 VTFCTLLRGFVQNNKK-SKVVVLLHKMAAEKL 570 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~ 570 (603)
.++..++.+....|+. +.+.+++.++....+
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p 267 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNP 267 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTT
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCC
Confidence 6777777777777776 556667777665443
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.14 E-value=6.5e-06 Score=77.09 Aligned_cols=433 Identities=13% Similarity=0.121 Sum_probs=233.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCC
Q 037409 71 CMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPN 150 (603)
Q Consensus 71 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 150 (603)
+-++.+|. |+.+|..|++-+..+ ..+++...++++... ++..+..|..-+....+..+++....+|.+.+..- .+
T Consensus 11 ~rie~nP~-di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEENPY-DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcCCc-cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 34455555 899999999987666 999999999999876 36678899999999999999999999999988763 35
Q ss_pred HhhHHHHHHHHHh-cCCHh----HHHHHHHHH-HhcCCCCc-HHHHHHHHHHHH---------hcCChHHHHHHHHHHHH
Q 037409 151 TVTFNFLINGLCA-EGRIM----EAARLFKKL-NVFACDPN-VVTFNTLINGLC---------RTRNTLVALKLFEEMVN 214 (603)
Q Consensus 151 ~~~~~~l~~~~~~-~g~~~----~A~~~~~~~-~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~ 214 (603)
...|...+..-.+ .|+.. .-.+.|+-. .+.|+++- -..|+..+..+- .+.+.+...++|++++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 7777777664433 22222 223344433 33444432 234555544332 23355667777777765
Q ss_pred hcCCccCCCh-hhHH------HHHHHH-------HhcCChhHHHHHHHHHhh--CCCCCChhhHHHHHHHHHhcCCHHH-
Q 037409 215 EFGAICKPDV-VTYN------SIIDGL-------CKDGFVDKAKELLLQMKD--RNINPNVITYNSLICGFCCVDDWKE- 277 (603)
Q Consensus 215 ~~~~~~~~~~-~~~~------~l~~~~-------~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~- 277 (603)
.. -.+. ..|+ .-|... -+...+..|.++++++.. +|......+ .-..|..++
T Consensus 166 tP----m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~ 234 (656)
T KOG1914|consen 166 TP----MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEI 234 (656)
T ss_pred Cc----cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHH
Confidence 31 1111 1111 111111 112234445555554432 121111111 001111111
Q ss_pred -HHHHHHHHHH----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhH-----HHHHHHHHhcCC-
Q 037409 278 -AKCLFIEMMD----NGVQ-PDVVTFNAMINYNCKDGKMDKVNRLLELMI-QRGVNPDTVTY-----NSLMDGFCLVGR- 344 (603)
Q Consensus 278 -A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~-----~~l~~~~~~~~~- 344 (603)
..+++...++ .++. .+..... ....-.+++.+ -.+..|+.... ....+.+...|+
T Consensus 235 ~qv~~W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~ 302 (656)
T KOG1914|consen 235 QQVELWKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDV 302 (656)
T ss_pred HHHHHHHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccc
Confidence 1122222211 1111 0000000 00011111111 11111111100 000111222222
Q ss_pred ------HHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 345 ------ISRARELFVSMVSKGCRHDVYSYNILINANCKD---QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 345 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
.+++..+++..+..-...+...|..+...--.. ...+....+++++.......-..+|..+++.-.+..-.
T Consensus 303 ~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 303 PDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGL 382 (656)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhH
Confidence 345555555554432222333333332211111 12555666666666543333345677777777777888
Q ss_pred HHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHR 494 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 494 (603)
..|..+|.+..+.+..+ +....+.++..+| .++..-|.++|+--++.. ..++.--...+..+...++-..+..+|++
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 88888888888776666 5556666666554 477888888888765532 44556666777777888888888888888
Q ss_pred HhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 495 LQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 495 ~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
....+..|+ ..+|..++.--..-|+...+.++-+++...
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 887744443 467888888777788888888777666543
No 106
>PLN02789 farnesyltranstransferase
Probab=99.10 E-value=1.4e-07 Score=86.85 Aligned_cols=204 Identities=12% Similarity=0.079 Sum_probs=113.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCH--HHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG-NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFV--LEA 453 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a 453 (603)
.+..++|+.+..+++...+. +..+|+....++...| ++++++..++++.+.+++ +..+|......+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 44555666666666554222 3344444444444555 456666666666554433 334444444344444442 455
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc---CCh----hHHHHH
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE---GQM----DKANDL 526 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 526 (603)
..+++.+.+.+ +-+..+|+....++.+.|++++++..++++++.++. |...|+....++.+. |.. ++.+.+
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66666666554 446666666666666666677777777777666555 556666665555443 222 345556
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 527 LLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
..+++... +.|...|..+...+.. .+...+|.+.+.+..+.++. ++.....|+++|..
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~--s~~al~~l~d~~~~ 267 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN--HVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC--cHHHHHHHHHHHHh
Confidence 65666654 4455666666666655 23345566666665554433 55666666666654
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.7e-08 Score=94.63 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=168.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037409 339 FCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDA 418 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 418 (603)
+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++..+. +......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 445666666666666666653 234566666666666666666666666666665332 555566666666666666667
Q ss_pred HHHHHHHhhCCCCC--------CHHhHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChHHHHHHHHHHHhCCChhHHH
Q 037409 419 LKLIDKMQLNDVVP--------DSFTFATYIDGLCKNGFVLEAVQVFQAI-RNCKCELRIETYNCLINGLCKMGRLKTAC 489 (603)
Q Consensus 419 ~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 489 (603)
...++.-+...++- +...-.. ........+....++|-++ ...+..+|+.+...|.-.|--.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 76666654432110 0000000 0111111223334444443 34454578889999999999999999999
Q ss_pred HHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 490 KLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 490 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
..|+.++...|. |..+||.|+..++...+.++|+..|.++++. .|. ..+...|+-.|+..|.+++|.+.+-.++..
T Consensus 451 Dcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999997666 7889999999999999999999999999996 565 456788899999999999999988887632
Q ss_pred C--------CCCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 569 K--------LVVSDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 569 ~--------~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
. ...++..+|..|-.++...++.+-+...
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 1112346788888888888887755443
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.09 E-value=1.1e-06 Score=96.00 Aligned_cols=336 Identities=10% Similarity=-0.036 Sum_probs=174.0
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC------CCC--hhhHHHHHH
Q 037409 196 LCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI------NPN--VITYNSLIC 267 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~ 267 (603)
....|+++.+..+++.+.... ...+..........+...|+++++...+......-- .+. ......+..
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~---~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEV---LLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHH---HhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 334556655555555442211 111222233344455567777777777766644310 011 111122234
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHhhHHHHHHH
Q 037409 268 GFCCVDDWKEAKCLFIEMMDNGVQPDV----VTFNAMINYNCKDGKMDKVNRLLELMIQRGVN-----PDTVTYNSLMDG 338 (603)
Q Consensus 268 ~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~ 338 (603)
.+...|++++|...+++....-...+. ...+.+...+...|++++|...+++....... ....+...+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 455677777777777776653111111 23344555566677777777777776542110 111233445556
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHhhHHHHHH
Q 037409 339 FCLVGRISRARELFVSMVSK----GCRH---DVYSYNILINANCKDQKVEDAVCLYREMLSER--IRP--SVITYNTLLS 407 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~ 407 (603)
+...|+++.|...+++.... +... ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 66777777777777766543 1110 11123334445566677777777777654421 111 1223334455
Q ss_pred HHHhcCCHHHHHHHHHHHhhCC--CCCCHH--hH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHH
Q 037409 408 GLFQVGNLGDALKLIDKMQLND--VVPDSF--TF--ATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---IETYNCLING 478 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 478 (603)
.+...|++++|...+....... ...... .. ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 5667777777777777664321 110000 00 0112333446777777777655443111111 1113455666
Q ss_pred HHhCCChhHHHHHHHHHhhC----CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 479 LCKMGRLKTACKLFHRLQHK----GPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
+...|+.++|...+++.... +..+ ...++..+..++...|+.++|...+.++++..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777777777777776652 2111 12345556666777788888888888887764
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.07 E-value=9.9e-09 Score=93.07 Aligned_cols=248 Identities=12% Similarity=0.030 Sum_probs=164.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 037409 337 DGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (603)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++. ++... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchH
Confidence 33456788888886555 2222212223445566788888998776553 33333 3566666666665555445666
Q ss_pred HHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
.++.-+++.......+ +..........+...|++++|++++... .+.+.....+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666654433332 3333333334566789999999887542 46778888899999999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHHH--Hc--CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 496 QHKGPIPDVVTCSTMIHWLC--KE--GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~--~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+. ..|. +...++.++. .. +++.+|..+|+++.+. .++++.+++.++.++...|++++|.++++++.+.++.
T Consensus 158 ~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 985 3343 3333444333 23 3799999999998876 4788999999999999999999999999999877665
Q ss_pred CCCHHHHHHHHHHHHcCCcH-HHHHHHHHhh
Q 037409 572 VSDLSLSSKVVDLLSKDKKY-RECLNQFRHL 601 (603)
Q Consensus 572 ~~~~~~~~~l~~~~~~~g~~-~eA~~~~~~~ 601 (603)
++.+...++-+....|+. +.+.++++++
T Consensus 234 --~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 234 --DPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp --HHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred --CHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 888888899888888888 5566676654
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=1e-07 Score=91.93 Aligned_cols=239 Identities=14% Similarity=0.045 Sum_probs=188.7
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 037409 326 NPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL 405 (603)
Q Consensus 326 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 405 (603)
+|-...-..+...+.+.|-...|..+++++. .|...+.+|+..|+..+|..+..+..+ .+|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444455667778888999999999988764 466788899999999999999888777 46788889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
.+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 88888888889999988875432 11122222334789999999999888766 66788999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
+.|.+.|.......|. +...||.+..+|.+.|+..+|...++++++.+ ..+...|....-...+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 9999999999987665 78899999999999999999999999999987 667778888888889999999999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHH
Q 037409 566 AAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 566 ~~~~~~~~~~~~~~~l~~~~ 585 (603)
........+.++...++...
T Consensus 614 l~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHhhhhcccchhhHHHHHHH
Confidence 75433223555554444443
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.04 E-value=7.2e-08 Score=93.03 Aligned_cols=217 Identities=11% Similarity=0.075 Sum_probs=179.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG 443 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (603)
...-..+...+.+.|-...|+.+|+++.. |...+.+|...|+..+|..+..+..+ -+|++..|..+++.
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 33445677889999999999999987643 67788899999999999999988877 36788899999988
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.++- -..+|-.++.+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHH
Confidence 87777788998888765432 1112222233478999999999999887554 678999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.|....... |.+...|+.+..+|.+.|+..+|...++++.+.+.. +..++....-...+.|.+++|.+.+++++
T Consensus 539 v~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~--~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ--HWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC--CCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999864 556788999999999999999999999999998865 66777777777899999999999999875
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.02 E-value=5.3e-08 Score=87.40 Aligned_cols=184 Identities=9% Similarity=-0.017 Sum_probs=108.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChH---HH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV-PD-SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE---TY 472 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~ 472 (603)
....+..+...+...|++++|...++++....+. |. ...+..+..++...|++++|...++++.+.. +.+.. .+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 3445555566666677777777777766554321 11 1344555666666777777777777766543 22222 34
Q ss_pred HHHHHHHHhC--------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 473 NCLINGLCKM--------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCT 544 (603)
Q Consensus 473 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 544 (603)
..+..++... |+.++|.+.++++.+..+. +...+..+....... . .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~----~-------~~-------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLR----N-------RL-------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHH----H-------HH-------HHHHHH
Confidence 4445555443 5566666666666665333 222222221110000 0 00 001125
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 545 LLRGFVQNNKKSKVVVLLHKMAAEKLV-VSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
++..+.+.|++++|...++++++..+. |..+..+..++.++.+.|++++|.++++.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566788899999999999998876553 234678889999999999999999988775
No 113
>PLN02789 farnesyltranstransferase
Probab=99.02 E-value=3.6e-07 Score=84.11 Aligned_cols=212 Identities=11% Similarity=0.066 Sum_probs=160.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
++++. ....+..+.|+..++++++.+|. +..+|+....++...| ++++++..++++.+.+ +-+..+|+....++.+
T Consensus 42 ~~ra~-l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 42 YFRAV-YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHH-HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 34433 33457889999999999998876 7788988888888888 6899999999999876 5566678777666767
Q ss_pred cCCc--chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CCh-
Q 037409 129 MGIT--SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT---RNT- 202 (603)
Q Consensus 129 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 202 (603)
.|+. +++...++++++..++ |..+|+....++...|+++++++.++++.+.+ +.|..+|+....++.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccc
Confidence 7763 6778888899888655 88899999999999999999999999999876 55778888877666554 222
Q ss_pred ---HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc----CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 037409 203 ---LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD----GFVDKAKELLLQMKDRNINPNVITYNSLICGFCC 271 (603)
Q Consensus 203 ---~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 271 (603)
+++++...+++.. .|.|...|+-+...+... +...+|.+.+.+..+.+ +.+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~----~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILA----NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHh----CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4677788788776 467788888888888773 34456777777766543 2356666777777764
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.97 E-value=2.3e-07 Score=78.77 Aligned_cols=160 Identities=18% Similarity=0.158 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM 482 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (603)
..+-..+...|+-+....+........ ..|.......+....+.|++.+|...+++..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 555566666777777777666654332 2244555556677777788888888887777655 67778888888888888
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
|+++.|..-|.+..+..+. ++...+.++..+.-.|+.+.|..++......+ +-|..+-..|..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888877776444 56667777777777888888888887777654 346666677777777788888777766
Q ss_pred HHHH
Q 037409 563 HKMA 566 (603)
Q Consensus 563 ~~~~ 566 (603)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 5544
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.97 E-value=1.2e-07 Score=81.15 Aligned_cols=151 Identities=9% Similarity=0.023 Sum_probs=122.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3468899998887554432221 11 01223677888888888888766 78999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHH-HHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWL-CKEGQ--MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
++|...|++..+.++. +...+..++.++ ...|+ .++|.++++++++.+ +.+...+..++..+.+.|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998776 888888888874 67777 599999999999986 667888999999999999999999999
Q ss_pred HHHHHCCCC
Q 037409 563 HKMAAEKLV 571 (603)
Q Consensus 563 ~~~~~~~~~ 571 (603)
+++++..+.
T Consensus 168 ~~aL~l~~~ 176 (198)
T PRK10370 168 QKVLDLNSP 176 (198)
T ss_pred HHHHhhCCC
Confidence 999986553
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.92 E-value=1.1e-06 Score=90.97 Aligned_cols=216 Identities=12% Similarity=0.078 Sum_probs=114.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCcchHHHHHHHH
Q 037409 67 YFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN-GLFPD---LFVLNLLINCLCKMGITSGAFVVLGRI 142 (603)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 142 (603)
+-|++.+..+|+ +...|...+....+.++.+.|++++++++.. ++.-. ...|.++++....-|.-+...++|+++
T Consensus 1445 eDferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRA 1523 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERA 1523 (1710)
T ss_pred HHHHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHH
Confidence 344444454444 5666777777777777777777777777653 11111 123444455444455555555566665
Q ss_pred HHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 143 LRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
.+.. ....+|..|...|.+.+.+++|.++++.|.+. +......|...+..+.++++-++|..++.++++.- |.
T Consensus 1524 cqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l----Pk 1596 (1710)
T KOG1070|consen 1524 CQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL----PK 1596 (1710)
T ss_pred HHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc----ch
Confidence 5541 12335555666666666666666666666543 12344556666666666666666666666655542 11
Q ss_pred --ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 223 --DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ 291 (603)
Q Consensus 223 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 291 (603)
......-.+..-.+.|+.+.+..+|+..... .+--...|+..++.-.+.|+.+.+..+|++....++.
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 2222333334444555555555555555543 2223445555555555555555555555555555433
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.92 E-value=1.3e-07 Score=76.44 Aligned_cols=110 Identities=9% Similarity=-0.100 Sum_probs=83.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..+...+...|++++|...|+......+. +...|..++.++...|++++|+..|+++.+.+ +.+...+..++.++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3555677777888888888888888877655 67778888888888888888888888888765 567777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 551 QNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
..|++++|...++++++..+. ++..+...+.+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~--~~~~~~~~~~~ 135 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYA--DASWSEIRQNA 135 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence 888888888888888876654 55555554443
No 118
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.91 E-value=5.9e-05 Score=70.93 Aligned_cols=433 Identities=11% Similarity=0.103 Sum_probs=237.8
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHH
Q 037409 108 NSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVV 187 (603)
Q Consensus 108 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 187 (603)
++.+ |.|..+|+.|++-+..+ -.+++++.++++... ++.....|..-+..-.+.++++...++|.+.... ..+..
T Consensus 13 ie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlD 87 (656)
T KOG1914|consen 13 IEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLD 87 (656)
T ss_pred HhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHh
Confidence 3344 77888999998866555 888999999998876 3336678888888888899999999999988765 34566
Q ss_pred HHHHHHHHHHhc-CCh----HHHHHHHHHHHHhcCCccCCChhhHHHHHHH---------HHhcCChhHHHHHHHHHhhC
Q 037409 188 TFNTLINGLCRT-RNT----LVALKLFEEMVNEFGAICKPDVVTYNSIIDG---------LCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 188 ~~~~l~~~~~~~-g~~----~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~~ 253 (603)
.|...+.--.+. |+. +.-.+.|+-.+...+. ...+...|+..+.. |..+.+++...++++++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~-di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGM-DIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhcc-CcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 666665544332 222 3344455555554321 11223344444433 23344555666677766653
Q ss_pred CCCCChhhHHHH------HHHH-------HhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHH--HH
Q 037409 254 NINPNVITYNSL------ICGF-------CCVDDWKEAKCLFIEMMDN--GVQPDVVTFNAMINYNCKDGKMDKVN--RL 316 (603)
Q Consensus 254 ~~~~~~~~~~~l------~~~~-------~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~--~~ 316 (603)
-+.--...|+-. |+.. -+...+..|..+++++... |......+ .-..|-.++.. ++
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~ 239 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVEL 239 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHH
Confidence 111111111110 0000 0111223333333333211 11100000 00011111111 11
Q ss_pred HHHHH----HCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCcchH-H----HHHHHHHhcCC------
Q 037409 317 LELMI----QRGVN-PDTVTYNSLMDGFCLVGRISRARELFVSMVS-KGCRHDVYSY-N----ILINANCKDQK------ 379 (603)
Q Consensus 317 ~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~-~----~l~~~~~~~~~------ 379 (603)
+...+ ..+.. .+..... ....-.+++.+. .+..|++... . ..-+.+...|+
T Consensus 240 W~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~ 307 (656)
T KOG1914|consen 240 WKNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKS 307 (656)
T ss_pred HHHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchh
Confidence 11111 01111 0000000 001111111111 1111211110 0 00112233333
Q ss_pred -hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhCCCHHHHH
Q 037409 380 -VEDAVCLYREMLSERIRPSVITYNTLLSGLFQ---VGNLGDALKLIDKMQLN-DVVPDSFTFATYIDGLCKNGFVLEAV 454 (603)
Q Consensus 380 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 454 (603)
.+++..++++....-..-+...|..+.+.--. ....+.....++++... ..+| ..+|..++..-.+..-+..|.
T Consensus 308 ~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHH
Confidence 45566666665543222233334333332111 12355666677776543 2333 346778888888888899999
Q ss_pred HHHHHHHHcCCCC-ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 455 QVFQAIRNCKCEL-RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 455 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+|.++.+.+..+ ++.+.++++..|+ .++.+-|.++|+--++.-.. ++..-...+.-+...|+-..+..+|++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999876665 7788888888776 57899999999987775332 4445567778888899999999999999998
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 534 NCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 534 ~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+++++ ..+|..++.--..-|+...+.++-+++...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 66665 467999998889999999999998887643
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.91 E-value=4.3e-07 Score=92.35 Aligned_cols=136 Identities=9% Similarity=0.012 Sum_probs=106.1
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
..+...+..|.....+.|.+++|..+++.+.+.. |.+......++.++.+.+++++|...+++.....+. +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 3356777778888888888888888888888765 556777777888888888888888888888887666 67777778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
..++.+.|++++|..+|+++...+ +.++.++..++.++...|+.++|...|+++.+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 888888888888888888888743 4457778888888888888888888888887653
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.90 E-value=5.4e-07 Score=77.17 Aligned_cols=155 Identities=11% Similarity=0.059 Sum_probs=122.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCH
Q 037409 371 INANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFV 450 (603)
Q Consensus 371 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (603)
+..|...|+++.+....+.+.. |. ..+...++.++++..++...+.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3568889998887554433221 11 0122367778888888888776544 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHH-HhCCC--hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 451 LEAVQVFQAIRNCKCELRIETYNCLINGL-CKMGR--LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
++|...|++..+.. +.+...+..+..++ ...|+ .++|..++++..+.++. +...+..++..+...|++++|+..|
T Consensus 90 ~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999877 66888999988874 67777 59999999999998777 8889999999999999999999999
Q ss_pred HHHHHCCCCCCHHH
Q 037409 528 LDMEAKNCVPSEVT 541 (603)
Q Consensus 528 ~~~~~~~~~~~~~~ 541 (603)
+++++.. +|+..-
T Consensus 168 ~~aL~l~-~~~~~r 180 (198)
T PRK10370 168 QKVLDLN-SPRVNR 180 (198)
T ss_pred HHHHhhC-CCCccH
Confidence 9999886 565443
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.90 E-value=0.00012 Score=73.30 Aligned_cols=205 Identities=14% Similarity=0.073 Sum_probs=141.0
Q ss_pred chhHHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037409 44 GTSIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLI 123 (603)
Q Consensus 44 ~~~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 123 (603)
....+..+.+......|..++|..+++..-...++ |..+...+-..|-..|+.++|..+|+++... -|+......+.
T Consensus 41 n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lF 117 (932)
T KOG2053|consen 41 NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLF 117 (932)
T ss_pred CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 33444566677777889999999888766554444 7888889999999999999999999999876 46688888899
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc-CCHhH---------HHHHHHHHHhcC-CCCcHHHHHHH
Q 037409 124 NCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAE-GRIME---------AARLFKKLNVFA-CDPNVVTFNTL 192 (603)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~---------A~~~~~~~~~~~-~~~~~~~~~~l 192 (603)
.+|.+-+++.+-.++--++.+.-++ +...+-+++..+.+. ...++ |.+.++.+.+.+ ---+..-....
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Ly 196 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILY 196 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHH
Confidence 9999999888766665555554333 445444455555443 22222 445555555543 11122223333
Q ss_pred HHHHHhcCChHHHHHHHH-HHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 037409 193 INGLCRTRNTLVALKLFE-EMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
...+...|.+++|.+++. ...+.. .+.+...-+.-+..+...+++.+..++-.++..+|.
T Consensus 197 l~iL~~~~k~~eal~~l~~~la~~l---~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 197 LLILELQGKYQEALEFLAITLAEKL---TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhc---cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 456667899999999994 444332 334444445667888899999999999999988753
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.87 E-value=1e-06 Score=74.85 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
..+-..+...|+-+....+........ +.+.......+....+.|++..|+..+.+..... ++|...++.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 333444444455444444444433221 1133333334444555555555555555554432 23445555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|..-|.+..+.. +.++..++++.-.+.-.|+++.|..++......+.. |...-..+..+....|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 55555555555554433 334444555555555555555555555555443322 3444444445555555555555444
Q ss_pred H
Q 037409 528 L 528 (603)
Q Consensus 528 ~ 528 (603)
.
T Consensus 226 ~ 226 (257)
T COG5010 226 V 226 (257)
T ss_pred c
Confidence 3
No 123
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.87 E-value=5.6e-07 Score=80.76 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=35.8
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPG--MTSFTILLTMLAKNKQYDTVVSLFKRLNSN 110 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 110 (603)
+-.+......|++++|+..|++++...|... ..++..++.++.+.|++++|+..++++.+.
T Consensus 37 ~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~ 99 (235)
T TIGR03302 37 YEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL 99 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3333444456666667776666666554311 234556666666666666676666666654
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=2.9e-06 Score=87.98 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=144.0
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc-CCC---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChh
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVF-ACD---PNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVV 225 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (603)
+...|...|......++.++|++++++.... ++. --...|.++++....-|.-+...++|+++.+.. ..-.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-----d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-----DAYT 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-----chHH
Confidence 4556666677777777777777777776542 111 112356666666666676677777777777642 1234
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ-PDVVTFNAMINYN 304 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 304 (603)
.|..|...|.+.+.+++|.++++.|.++ +......|...+..+.++++-+.|..++.+.++.-.+ -........+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 5666777777777777777777777665 2345667777777777777777777777776664111 1233444445555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhcCChHH
Q 037409 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDV--YSYNILINANCKDQKVED 382 (603)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~ 382 (603)
.+.|+.+.+..+|+..+...++ ....|+..+++-.++|+.+.++.+|+++...++.+-- ..|...+..--+.|+-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6677777777777777665333 4566777777777777777777777777776554432 344555554444555544
Q ss_pred HHHHHH
Q 037409 383 AVCLYR 388 (603)
Q Consensus 383 A~~~~~ 388 (603)
+..+=.
T Consensus 1690 vE~VKa 1695 (1710)
T KOG1070|consen 1690 VEYVKA 1695 (1710)
T ss_pred HHHHHH
Confidence 444333
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.81 E-value=4.5e-07 Score=73.37 Aligned_cols=123 Identities=10% Similarity=-0.055 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC
Q 037409 420 KLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG 499 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 499 (603)
.++++..+. .|+ .+......+...|++++|...|+.+.... +.+...+..++.++.+.|++++|...|++..+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344555443 233 34456677788888898988888888766 6678888888888888999999999999888876
Q ss_pred CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 500 PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 500 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+. +...+..++.++...|++++|+..|+++++.. +.+...+.....++
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~ 136 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQ 136 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 65 77888888888888899999999999888864 44555555544443
No 126
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=4.4e-06 Score=70.45 Aligned_cols=190 Identities=14% Similarity=0.041 Sum_probs=130.2
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 377 DQKVEDAVCLYREMLSE---R-IRPSV-ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
..+.++.++++.++... + ..++. ..|..++-+....|+.+.|...++.+...- +.+......-..-+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 56778888888777653 2 33333 234445555667788888888888877653 223333222223345568888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+|+++++.+.+.+ |.|..++-.-+...-..|+.-+|++-+....+.-+. |...|..+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~-D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMN-DQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8888888888765 666677766666666777777888888777776443 88888888888888888888888888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCC
Q 037409 532 AKNCVPSEVTFCTLLRGFVQNN---KKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 532 ~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 570 (603)
=.. |.++..+..++..+.-.| +.+.+.++|.+.++.++
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 754 556667777777766555 34667788888877544
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=1.1e-05 Score=68.63 Aligned_cols=247 Identities=15% Similarity=0.085 Sum_probs=137.3
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 57 SGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
.+-|++..++..-...-... .++..-.-+.++|...|++...++-..... .|....+..+...+..-++.+.-.
T Consensus 19 fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~~~~ 92 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKKSIL 92 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhHHHH
Confidence 34566766666555442221 344445556777777777665544322221 233333333333333333333333
Q ss_pred -HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 137 -VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
.+.+.+.......+......-+..|+..|++++|.+...... +......-+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 233333333333333333334455677777888777766622 3333333455666777777777777777764
Q ss_pred cCCccCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 216 FGAICKPDVVTYNSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ 291 (603)
Q Consensus 216 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 291 (603)
. +..+.+.|..+|.+ .+.+.+|.-+|++|.++ .+|++.+.+-...++...|++++|..+++..+... .
T Consensus 167 d------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~ 238 (299)
T KOG3081|consen 167 D------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-A 238 (299)
T ss_pred c------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-C
Confidence 2 45566666666654 34577777777777664 56677777777777777777777777777777664 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 037409 292 PDVVTFNAMINYNCKDGKM-DKVNRLLELMIQR 323 (603)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 323 (603)
.++.+...++..-...|.. +...+.+.++...
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 3455555555544444443 3344455555544
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=6.4e-06 Score=84.00 Aligned_cols=217 Identities=12% Similarity=0.044 Sum_probs=154.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH
Q 037409 327 PDTVTYNSLMDGFCLVGRISRAR-ELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL 405 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 405 (603)
.++.....+=.+.+..|..++|- +++.++.+ ++.....-....+++.-....... ...+...+..|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L 92 (694)
T PRK15179 26 SGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLV 92 (694)
T ss_pred CCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHH
Confidence 34444444445566677666663 34433321 333333333333444333333332 34468889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
.....+.|.+++|..+++...+..+. +......++..+.+.+++++|+..+++..... +.+......+..++.+.|++
T Consensus 93 a~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 93 ARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999999886433 45667778888999999999999999999876 67888999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
++|..+|+++...++. +..++..++.++...|+.++|...|+++.+.. .+....|..++ ++...-...++++
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHc
Confidence 9999999999986554 68889999999999999999999999999873 45545544332 2334444555555
Q ss_pred H
Q 037409 566 A 566 (603)
Q Consensus 566 ~ 566 (603)
-
T Consensus 243 ~ 243 (694)
T PRK15179 243 G 243 (694)
T ss_pred C
Confidence 3
No 129
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=7.2e-06 Score=69.77 Aligned_cols=254 Identities=13% Similarity=0.084 Sum_probs=164.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 301 INYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
++-+.-.|++..++..-....... -+...-..+-++|...|....... .+.... .+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchh
Confidence 344555788887776655544332 344445556677777777554332 222221 23333333333334444454
Q ss_pred HHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHH
Q 037409 381 EDAVC-LYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQA 459 (603)
Q Consensus 381 ~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 459 (603)
++-+. +.+.+.......+......-...|...|++++|++..+... +......=+..+.+..+++-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 34444444333333333444556889999999999887632 223333344556778889999999999
Q ss_pred HHHcCCCCChHHHHHHHHHHHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 460 IRNCKCELRIETYNCLINGLCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 460 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
|.+.. +..+.+.|..++.+ .+.+.+|.-+|+++.++ ..|+..+.+..+.++...|++++|..+++.++...
T Consensus 163 mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 163 MQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred HHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 98633 55677777777654 34789999999999986 45788899999999999999999999999999885
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCC
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSK-VVVLLHKMAAEKLV 571 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~ 571 (603)
..++.++..++-+-...|...+ ..+.+.++....+.
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 6678888777777777777644 45566666654443
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.72 E-value=9.9e-07 Score=71.24 Aligned_cols=113 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 456 VFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.++.+.... +.+......++..+...|++++|...|+.+.+.++. +...|..++.++...|++++|...+++.++.+
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 344444433 334566667777777888888888888887776554 66777778888888888888888888877765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.+...+..++.++...|++++|...+++.++..+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGE 117 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 556777777888888888888888888888776543
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.70 E-value=4.1e-07 Score=73.49 Aligned_cols=108 Identities=12% Similarity=0.008 Sum_probs=93.1
Q ss_pred HHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 491 LFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 491 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
.++++....+. +......++..+...|++++|.+.++++...+ +.+...+..++..+...|++++|..++++..+.++
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46666665444 55667778888999999999999999999876 66888999999999999999999999999988765
Q ss_pred CCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 571 VVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 571 ~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+..++.+|...|++++|.+++++.+
T Consensus 83 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 83 --DDPRPYFHAAECLLALGEPESALKALDLAI 112 (135)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 478888999999999999999999998765
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.67 E-value=3.5e-05 Score=79.54 Aligned_cols=237 Identities=12% Similarity=0.071 Sum_probs=113.6
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV-VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN 228 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 228 (603)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++...+..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~----------------- 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N----------------- 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h-----------------
Confidence 3445556666666666666666666655443 3332 2233333344444443333322 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (603)
++.......++.-...+...+.+. .-+...+..+..+|-+.|+.++|..+++++++.. +.|+...|.+...|...
T Consensus 89 -~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~- 163 (906)
T PRK14720 89 -LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE- 163 (906)
T ss_pred -hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-
Confidence 222222222332222333333332 1133355556666666666666666666666654 44555666666666665
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 388 (603)
+.++|..++.++... +...+++..+.+++.++.... |+ +.+.-..+.+
T Consensus 164 dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~~ 211 (906)
T PRK14720 164 DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIER 211 (906)
T ss_pred hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHHH
Confidence 666666665554433 444445556666666665542 11 1111122222
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 389 EMLSE-RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 389 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
.+... +..--..++-.+...|...+++++++.+++.+.+.... |.....-++.+|.
T Consensus 212 ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 212 KVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22221 11122334444555566667777777777777665433 4444444554443
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=3e-05 Score=79.97 Aligned_cols=222 Identities=9% Similarity=0.077 Sum_probs=113.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 78 SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
+.+...|..|+..+...+++++|.++.+...+.. |.....|..++-.+.+.++++++.-+ .+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~--------------- 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NL--------------- 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hh---------------
Confidence 3467788888888888888999999888777663 33333444444466666665554444 22
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.......++.-..-+...+... .-+..++..+..+|-+.|+.++|..+++++++.+ +.|+.+.|.+.-.|...
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D----~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD----RDNPEIVKKLATSYEEE 163 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHh
Confidence 22222222332222222333332 2233345555555555555555555555555542 44455555555555555
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN-------------------GVQPDVVTFN 298 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~~~~ 298 (603)
++++|++++.+...+ +...+++.++.+++.++... |..--..++.
T Consensus 164 -dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 164 -DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred -hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 555555555554433 22222233333333332222 1111223334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFC 340 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 340 (603)
.+-..|-..++++++..+++.+++.... |.....-++..|.
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 4445556666677777777777666433 4444555555443
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.61 E-value=6.6e-06 Score=76.38 Aligned_cols=166 Identities=11% Similarity=0.045 Sum_probs=118.2
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 037409 396 RPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCL 475 (603)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (603)
.|+...+...+........-..+..++.+..+ ..-...-|...+ .+...|.+++|+..++.+.+.. |.|+..+...
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~ 346 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA 346 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHHH-HHHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence 34555555555554443333333333333332 121233343333 4457789999999999988754 6778888888
Q ss_pred HHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 476 INGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
...+.+.++.++|.+.++++....+. ....+-.+..++.+.|++.+|+.+++...... +.|+..|..|+.+|...|+.
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 88999999999999999999986544 36667788889999999999999999988875 77888999999999999998
Q ss_pred HHHHHHHHHHHH
Q 037409 556 SKVVVLLHKMAA 567 (603)
Q Consensus 556 ~~a~~~~~~~~~ 567 (603)
.++...+.+...
T Consensus 425 ~~a~~A~AE~~~ 436 (484)
T COG4783 425 AEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHHH
Confidence 887766665544
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=2.4e-06 Score=80.23 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|++++.+.++.. +.+...+..-+..+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344455555666666666666666643 23 23345556666666666666666666543 44555555556666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 553 NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 553 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++++.|+++.+++++..+. +...|..|+.+|.+.|++++|+-.++.+|
T Consensus 248 ~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6667777777766664443 66666667777777777777766666655
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.54 E-value=7.5e-06 Score=66.66 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS--EVTFCTLL 546 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 546 (603)
.|..++..+ ..++...+...++.+.+..+.-. ....-.+...+...|++++|...|+.+.+....|+ ......|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 47788888888888887644411 22333455677888999999999998888652222 23455678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..+...|++++|+..++...... ..+..+...+++|.+.|++++|++.|++-+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88888999999998887643221 456677888899999999999999888643
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.00013 Score=61.79 Aligned_cols=201 Identities=14% Similarity=0.087 Sum_probs=151.1
Q ss_pred hcCCHHHHHHHHHHHHHc---C-CCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 341 LVGRISRARELFVSMVSK---G-CRHDVY-SYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
...+.++..+++..+... | ..++.. .+..++-+....|+.+.|...++++...- +.+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 345788999999888754 3 344443 35556667778999999999999988764 32333333333346678999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
++|+++++.+...++. |..++-.-+...-..|..-+|++-+....+.. ..|.+.|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999987643 66677766767777888889999988888754 789999999999999999999999999999
Q ss_pred hhCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 496 QHKGPIPDVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.-..|. ++..+..+...+.-.| +.+-+.++|.+.++.+ +.+...+..+.
T Consensus 181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~-~~~~ral~GI~ 232 (289)
T KOG3060|consen 181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN-PKNLRALFGIY 232 (289)
T ss_pred HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC-hHhHHHHHHHH
Confidence 987555 6777778887765554 6678899999999875 23444444443
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=4.8e-05 Score=70.86 Aligned_cols=184 Identities=15% Similarity=0.125 Sum_probs=135.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 037409 362 HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI 441 (603)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (603)
|+...+...+........-..+...+-+..+ ..-...-|..- ..+...|++++|+..++.+.+..+ .|+.......
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSK--RGGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhC--ccchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3444455555554444333333333333222 11122333333 345677999999999999987643 3677777788
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChh
Q 037409 442 DGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMD 521 (603)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 521 (603)
+.+...++.++|.+.++.+.... |........+..+|.+.|++.+|+++++......+. |+..|..|..+|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchH
Confidence 89999999999999999999865 445788889999999999999999999999998777 8999999999999999987
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++..... ..|.-.|++++|...+..+.++.
T Consensus 426 ~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALLARA------------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 7765444 34667799999999998887653
No 139
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=1.7e-07 Score=53.47 Aligned_cols=32 Identities=47% Similarity=0.728 Sum_probs=14.3
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 254 NINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 140
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=3.1e-07 Score=52.35 Aligned_cols=32 Identities=44% Similarity=0.816 Sum_probs=15.3
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 037409 146 CFTPNTVTFNFLINGLCAEGRIMEAARLFKKL 177 (603)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 177 (603)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.41 E-value=2.1e-05 Score=64.04 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH--hHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDV--VTCSTM 510 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l 510 (603)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+....+.|+. .....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 4677787877788777643 333 334445667777888888888888888886543332 234456
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
..++...|++++|+..++..... ......+...+.+|.+.|++++|...|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77788888888888888664332 334556677888888888888888888765
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.40 E-value=2e-05 Score=62.50 Aligned_cols=100 Identities=8% Similarity=-0.026 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+....-.+...+...|++++|.++|+-+...++. +..-|-.|+.++-..|++++|+..|..+...+ +.|+..+..++.
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~ 111 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455666777778899999999999999887666 77788889999999999999999999999886 677888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++...|+.+.|.+.|+.++...
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999888654
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.35 E-value=2.2e-05 Score=73.87 Aligned_cols=123 Identities=16% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM 482 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 482 (603)
..++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++..+.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 444555556667777777777776653 33 23345556666666677777776666543 44566666666666677
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
++.+.|..+.+++.+..|. +..+|..|+.+|...|+++.|+..+..+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777765443 45567777777777777777776666554
No 144
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.35 E-value=3.6e-05 Score=61.11 Aligned_cols=96 Identities=11% Similarity=-0.066 Sum_probs=69.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
..-.+..-+...|++++|..+|+-+...+ +.+..-|..|.-++-..|++++|+..|......++. |+..+-.++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 34445555667777888887777777655 556677777777777777888888888777776654 6667777777777
Q ss_pred HcCChhHHHHHHHHHHHC
Q 037409 516 KEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~ 533 (603)
..|+.+.|.+.|+.++..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888777777777654
No 145
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=0.00072 Score=61.74 Aligned_cols=287 Identities=12% Similarity=0.054 Sum_probs=145.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (603)
..+.+..++..|+..+..+++. .+.+..-|..-+..+...|++++|.--.+.-.+.... ....+.....++...+
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 3455667777788888887776 3455556666666677777777776555544432110 2223334444555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHH-HHHHHhcCCHHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN-PDTVTYNSL-MDGFCLVGRISRAREL 351 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l-~~~~~~~~~~~~a~~~ 351 (603)
+..+|.+.++.- ..+ ....++..++........ |.-.++..+ ..++...|+.+.|.+.
T Consensus 132 ~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 555555555411 000 111222222222222211 222333333 2344567777887777
Q ss_pred HHHHHHcCCCCCcchHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 037409 352 FVSMVSKGCRHDVYSYNILI--NANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLND 429 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (603)
-..+++.+ ....+..++ .++...++.+.+...|++.+..+ |+...-.. .-.-.+.++.+...
T Consensus 192 a~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~----------~~~~~k~le~~k~~- 255 (486)
T KOG0550|consen 192 AIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKS----------ASMMPKKLEVKKER- 255 (486)
T ss_pred HHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHh----------HhhhHHHHHHHHhh-
Confidence 77766653 112222233 33445677778888887776642 22211110 00111122222221
Q ss_pred CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH
Q 037409 430 VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC---KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT 506 (603)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 506 (603)
.+-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+..+|+.-.+...+.+.. -...
T Consensus 256 -----------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yika 323 (486)
T KOG0550|consen 256 -----------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKA 323 (486)
T ss_pred -----------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHH
Confidence 12234566777777777666643 23344555666666666777777777776666664211 1222
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+..-..++...++|++|.+-++++.+.
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333334455566777777777766654
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=1.5e-06 Score=62.95 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=52.5
Q ss_pred cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 517 EGQMDKANDLLLDMEAKNCV-PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|..++++ .+.+.. +......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777775411 1344555677778888888888777777 333332 4455556677788888888888
Q ss_pred HHHHh
Q 037409 596 NQFRH 600 (603)
Q Consensus 596 ~~~~~ 600 (603)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=1.9e-05 Score=59.20 Aligned_cols=94 Identities=13% Similarity=0.080 Sum_probs=51.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555555566666666666665554332 33445555555555566666666666655543 3334455555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 037409 552 NNKKSKVVVLLHKMAA 567 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~ 567 (603)
.|++++|...+++..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666665555543
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.21 E-value=5.4e-05 Score=71.81 Aligned_cols=92 Identities=12% Similarity=-0.021 Sum_probs=62.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
...+...|++++|+..|+++++.. +.+...|..+..+|.+.|++++|+..++++++.++. +...|..++.+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 344556677777777777776655 456666777777777777777777777777766544 556666677777777777
Q ss_pred hHHHHHHHHHHHCC
Q 037409 521 DKANDLLLDMEAKN 534 (603)
Q Consensus 521 ~~A~~~~~~~~~~~ 534 (603)
++|+..|+++++.+
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 77777777777653
No 149
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.21 E-value=0.0043 Score=56.46 Aligned_cols=285 Identities=15% Similarity=0.091 Sum_probs=168.9
Q ss_pred hhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH----HH
Q 037409 53 DRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTM--LAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLIN----CL 126 (603)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~ 126 (603)
+.+..+.||-..|++.-.+..+.- ..|......++.+ -.-.|+++.|.+-|+.|.. |+++-..-++ .-
T Consensus 91 GliAagAGda~lARkmt~~~~~ll-ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleA 164 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLL-SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEA 164 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhh-hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHH
Confidence 345557788888888877764331 1233333333333 3457888888888888874 2333222222 23
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC-CCCcHHHHH--HHHHH--HH-hcC
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA-CDPNVVTFN--TLING--LC-RTR 200 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~--~l~~~--~~-~~g 200 (603)
.+.|+.+.|++.-+.....-+. -...+..++...+..|+++.|+++.+.-.... +.++..--. .|+.+ .. -..
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 5678888888888777766433 45677788888888888888888888765432 344443211 12211 11 123
Q ss_pred ChHHHHHHHHHHHHhcCCccCCChhh-HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 037409 201 NTLVALKLFEEMVNEFGAICKPDVVT-YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAK 279 (603)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 279 (603)
+...|...-.+..+ ..||... -......+.+.|+..++-.+++.+-+....|+. + .+..+.+.|+. ++
T Consensus 244 dp~~Ar~~A~~a~K-----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdt--a~ 312 (531)
T COG3898 244 DPASARDDALEANK-----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDT--AL 312 (531)
T ss_pred ChHHHHHHHHHHhh-----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCc--HH
Confidence 45666666666655 3455433 233456778888888888888888776444432 2 22334455543 22
Q ss_pred HHHHHH---HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 037409 280 CLFIEM---MDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFC-LVGRISRARELFVSM 355 (603)
Q Consensus 280 ~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 355 (603)
+-++.. .... +.+..+...+..+....|++..|..--+..... .|....|..|.+.-. ..||-.++...+.+.
T Consensus 313 dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 313 DRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 222222 2221 234566666777777778887777666665544 556666666666544 347888888877777
Q ss_pred HHc
Q 037409 356 VSK 358 (603)
Q Consensus 356 ~~~ 358 (603)
++.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 765
No 150
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0003 Score=64.12 Aligned_cols=93 Identities=11% Similarity=-0.006 Sum_probs=73.5
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGP---IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
+-..+.|++..|.+.+.+.+..+| .|+...|.....+..+.|+..+|+.--+++++.+ +.-...+..-+.++...+
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALE 335 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHH
Confidence 345688999999999999998643 4566778888888899999999999999998753 222334555677888899
Q ss_pred CHHHHHHHHHHHHHCCC
Q 037409 554 KKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~ 570 (603)
+|++|++-++++.+...
T Consensus 336 ~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999987544
No 151
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.20 E-value=0.0045 Score=56.31 Aligned_cols=267 Identities=13% Similarity=0.116 Sum_probs=176.8
Q ss_pred hHHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037409 46 SIAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC 125 (603)
Q Consensus 46 ~~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (603)
.+-..|.+......|++++|++-|+-|+.. |..-.--...|.-.--+.|..+.|.++-+++...- +.-+......+..
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~ 197 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEA 197 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHH
Confidence 344466666666789999999999999864 22112223333334457899999999999987764 4556788889999
Q ss_pred HHhcCCcchHHHHHHHHHHCC-CCCCHhh--HHHHHHHHH---hcCCHhHHHHHHHHHHhcCCCCcHHHHH-HHHHHHHh
Q 037409 126 LCKMGITSGAFVVLGRILRSC-FTPNTVT--FNFLINGLC---AEGRIMEAARLFKKLNVFACDPNVVTFN-TLINGLCR 198 (603)
Q Consensus 126 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~ 198 (603)
.+..|+++.|+++.+.-.... +.+++.- --.|+.+-. -.-+...|...-.+..+. .||.+--. .-..++.+
T Consensus 198 r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~ 275 (531)
T COG3898 198 RCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFR 275 (531)
T ss_pred HHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHh
Confidence 999999999999998765432 2333321 222222211 123566666665555544 67765433 33578899
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCC-ChhhHHHHHHHHHhcCCHH
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR-NINP-NVITYNSLICGFCCVDDWK 276 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~ 276 (603)
.|+..++-.+++.+-+.. |....+. +-.+.+.|+ .+++-+++..+. ..+| +......+..+-...|++.
T Consensus 276 d~~~rKg~~ilE~aWK~e-----PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 276 DGNLRKGSKILETAWKAE-----PHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred ccchhhhhhHHHHHHhcC-----CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 999999999999998853 4443332 222345554 344333333221 1222 5566777788888999998
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCC
Q 037409 277 EAKCLFIEMMDNGVQPDVVTFNAMINYNC-KDGKMDKVNRLLELMIQRGVNP 327 (603)
Q Consensus 277 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 327 (603)
.|..--+..... .|....|..|...-. ..|+-.++...+-+..+..-.|
T Consensus 347 ~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 347 AARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 887776666654 678888888888764 4599999999999988764333
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=3.9e-05 Score=60.27 Aligned_cols=102 Identities=16% Similarity=0.065 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC--VPSEVTFCTL 545 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l 545 (603)
.++..++..+.+.|++++|...|..+.+..+.. ....+..++.++.+.|++++|...++++..... +....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466778888899999999999999998764431 134667788899999999999999999987531 1125678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.++.+.|++++|...++++++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 89999999999999999999987654
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.19 E-value=3.5e-05 Score=57.70 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=55.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..+..+. +...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHHH
Confidence 3445555666666666666666666543 334455556666666666666666666666654433 4455566666666
Q ss_pred cCCcHHHHHHHHHhh
Q 037409 587 KDKKYRECLNQFRHL 601 (603)
Q Consensus 587 ~~g~~~eA~~~~~~~ 601 (603)
..|++++|...+++.
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 666666666666554
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.18 E-value=3.5e-06 Score=61.07 Aligned_cols=81 Identities=19% Similarity=0.277 Sum_probs=52.6
Q ss_pred CCChhHHHHHHHHHhhCCCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 482 MGRLKTACKLFHRLQHKGPI-PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
.|+++.|+.+++++.+..+. |+...+..++.++.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46777777777777775442 2444555577778888888888888777 3322 2233455566777888888888887
Q ss_pred HHHH
Q 037409 561 LLHK 564 (603)
Q Consensus 561 ~~~~ 564 (603)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.14 E-value=0.00011 Score=57.63 Aligned_cols=105 Identities=19% Similarity=0.080 Sum_probs=78.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTM 510 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l 510 (603)
.++..++..+...|++++|...++.+..... +.....+..++.++.+.|+++.|...|+.+....+.. ...++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3456677778888999999999988876431 1124567778888889999999999999888764432 24567778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
+.++.+.|++++|...++++++.. +.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~ 111 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY-PGSSA 111 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC-cCChh
Confidence 888888899999999999888874 34433
No 156
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=0.011 Score=58.05 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhh-CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQH-KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 530 (603)
..+|..|..-....|.++.|...--.+.+ .++-|....|..+.-+-+....+.-.-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 34445555555667777777766554444 234566677776666655544444333333333
No 157
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=0.00018 Score=63.36 Aligned_cols=116 Identities=14% Similarity=0.096 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CcchHHHH
Q 037409 62 SNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG---ITSGAFVV 138 (603)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 138 (603)
.+....-++.-++.+|. |...|-.|..+|...|+++.|...|.++.+.. ++++..+..+..++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 44445555555565554 66667777777777777777777777776654 455566666655544332 23345566
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 180 (603)
++++++.++. |+.+...|...+...|++.+|...|+.|.+.
T Consensus 216 l~~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666665433 5555555555666666666666666666654
No 158
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.00012 Score=64.48 Aligned_cols=120 Identities=10% Similarity=-0.008 Sum_probs=97.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC---ChhHHHH
Q 037409 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG---QMDKAND 525 (603)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~ 525 (603)
..+....-++.-...+ |.|...|..|..+|...|+.+.|..-|.+..+..++ |...+..+..++..+. ...++..
T Consensus 137 ~~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 137 EMEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred cHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 3555555555555545 778999999999999999999999999999997555 7888888888765443 4578899
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 526 LLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+|++++..+ +.|..+...|+..+...|++.+|...|+.|++..+.
T Consensus 215 ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 215 LLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 999999976 567788889999999999999999999999986553
No 159
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.06 E-value=0.0012 Score=58.74 Aligned_cols=183 Identities=10% Similarity=0.053 Sum_probs=95.8
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCH-HHHHHHHH
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMT--SFTILLTMLAKNKQYDTVVSLFKRLNSNGLF-PDL-FVLNLLIN 124 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~-~~~~~l~~ 124 (603)
.|-.+......|++++|+..|++++...|.+... +.-.++.++.+.+++++|...|++.++.... |+. .++-.++.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 3455555556788888888888888877764322 2245667778888888888888888876411 221 12222222
Q ss_pred HHHhcC---------------Cc---chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH
Q 037409 125 CLCKMG---------------IT---SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV 186 (603)
Q Consensus 125 ~~~~~g---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 186 (603)
+....+ |. ..|+..|+.+++. |=...-..+|...+..+... =.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la 175 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LA 175 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HH
Confidence 211111 00 1222333333333 22222233333333333210 00
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
.--..+...|.+.|.+..|+.-++.+++..+. .+........++.+|...|..++|.++...+.
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~-t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD-TQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00113455666777777777777777766421 22234445566677777777777766655543
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.05 E-value=0.00031 Score=59.16 Aligned_cols=113 Identities=11% Similarity=-0.021 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.+..++..+...|++++|...|++..+..+.++ ...+..++.++.+.|++++|+..++++++.. +.+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444444445555555555555444322221 2344444555555555555555555555432 2233344444444
Q ss_pred HHhcCC--------------HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Q 037409 549 FVQNNK--------------KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK 589 (603)
Q Consensus 549 ~~~~g~--------------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 589 (603)
+...|+ +++|.++++++...++. .+..++..+...|
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~-----~~~~~~~~~~~~~ 165 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN-----NYIEAQNWLKTTG 165 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch-----hHHHHHHHHHhcC
Confidence 444443 46666667666654332 2444444444444
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.05 E-value=0.0002 Score=68.04 Aligned_cols=92 Identities=16% Similarity=0.041 Sum_probs=57.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh
Q 037409 407 SGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK 486 (603)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 486 (603)
..+...|++++|+..|++++..... +...+..+..++...|++++|+..++++++.. +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 3445566666666666666655433 45555566666666666666666666666654 445566666666666666666
Q ss_pred HHHHHHHHHhhCCC
Q 037409 487 TACKLFHRLQHKGP 500 (603)
Q Consensus 487 ~A~~~~~~~~~~~~ 500 (603)
+|...|++.++.++
T Consensus 88 eA~~~~~~al~l~P 101 (356)
T PLN03088 88 TAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCC
Confidence 66666666666543
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=5.8e-05 Score=65.85 Aligned_cols=96 Identities=20% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhH
Q 037409 90 MLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIME 169 (603)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (603)
-+.+.++|.+|+..|.+++... |.|+..|.--..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 3444555555555555555443 334444444444555555555555544444444221 23345555555555555555
Q ss_pred HHHHHHHHHhcCCCCcHHHH
Q 037409 170 AARLFKKLNVFACDPNVVTF 189 (603)
Q Consensus 170 A~~~~~~~~~~~~~~~~~~~ 189 (603)
|++.|++.++. +|+..+|
T Consensus 168 A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHhhhcc--CCCcHHH
Confidence 55555554443 4444443
No 163
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.04 E-value=0.0014 Score=52.94 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=92.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC-CCHhhHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFT-PNTVTFNFLI 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~ 158 (603)
.+.....+..++...|++.+|...|++...--+-.|......+.++....+++..|...++.+.+..+. .+......+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 445556777888888888888888888876555567777777888888888888888888887765321 1233445566
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
+.+...|++.+|...|+..... -|+...-......+.++|+.+++..-+..+.+
T Consensus 168 R~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 7777888888888888887765 56665555555666677766666555544443
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.04 E-value=0.001 Score=61.16 Aligned_cols=170 Identities=13% Similarity=0.138 Sum_probs=89.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSN----GLFPD-LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (603)
...|-..|++++|...|.++... +-+.+ ...+.....++ +.+++++|...+++ .+..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~---------------A~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEK---------------AIEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHH---------------HHHHHH
Confidence 55667777888888877776432 10000 01122222222 22244444444433 334456
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcCCccC--CChhhHHHHHHHHHhcCC
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT-RNTLVALKLFEEMVNEFGAICK--PDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 239 (603)
..|++..|-+++.++ ...|... |++++|++.|++..+....... .-..++..++..+.+.|+
T Consensus 106 ~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred hcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 666666665555554 3445555 7888888888887765310000 113345566777888888
Q ss_pred hhHHHHHHHHHhhCCCCC-----Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 240 VDKAKELLLQMKDRNINP-----NVI-TYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
+++|.++|+++....... +.. .+...+-++...||...|...+++....
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888888888776542221 121 2233344556677888888888777654
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.00011 Score=61.68 Aligned_cols=96 Identities=9% Similarity=-0.055 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
...+..++..+...|++++|...|++.....+.| ...+|..++.++...|++++|+..+++++... +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4556666677777788888888887777653332 23467777777888888888888888877753 33445555556
Q ss_pred HHHH-------hcCCHHHHHHHHHHH
Q 037409 547 RGFV-------QNNKKSKVVVLLHKM 565 (603)
Q Consensus 547 ~~~~-------~~g~~~~a~~~~~~~ 565 (603)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 777777555554443
No 166
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.01 E-value=0.013 Score=54.62 Aligned_cols=51 Identities=12% Similarity=0.140 Sum_probs=33.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+...|++.++.-.-..+.+ +. |++.+|..++-++....+++||..++..+|
T Consensus 472 Lysqgey~kc~~ys~WL~~--ia-PS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IA-PSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hC-CcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 4566777776665555554 44 577777777777777777777777776654
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=0.00014 Score=63.63 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=77.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
..-..+.+++++|+..|.++++.. |.|...|..-..+|.+.|.++.|++-.+..+..++. ...+|..|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 344567788888888888888776 667888888888888888888888888888886544 566888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
++|++.|++.++. .|+..+|
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESY 185 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHH
Confidence 8888888888885 4665554
No 168
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.99 E-value=0.0045 Score=50.13 Aligned_cols=134 Identities=11% Similarity=0.033 Sum_probs=92.3
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CCHhHHHH
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PDVVTCST 509 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ 509 (603)
.|....-..|..++...|+..+|...|++...--+..|...+..+.++....+++..|...++++.+.++. -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45555566677777888888888888887776545567777777788888888888888888877775321 01223445
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+...+...|++.+|+..|+.+.+. -|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667778888888888888888774 4666665556666777776666655555444
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.98 E-value=0.00074 Score=67.02 Aligned_cols=137 Identities=6% Similarity=-0.102 Sum_probs=74.9
Q ss_pred CCHHhHHHHHHHHHh--C---CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC--------CChhHHHHHHHHHhhC
Q 037409 432 PDSFTFATYIDGLCK--N---GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM--------GRLKTACKLFHRLQHK 498 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 498 (603)
.+...|...+++... . ++...|..+|+++.+.. |.....+..+..++... .++..+.+...+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 344455555444322 1 12445556666655543 33344444433333221 1123333333333332
Q ss_pred C-CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 499 G-PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 499 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
. ...+...|..+.......|++++|...++++++.+ |+...|..++..+...|+.++|.+.++++...++.
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG 485 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 1 11244566666666666777777777777777764 56667777777777777777777777777766555
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.90 E-value=5.9e-05 Score=52.20 Aligned_cols=63 Identities=6% Similarity=0.067 Sum_probs=34.3
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN-KKSKVVVLLHKMAA 567 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 567 (603)
..+|..++..+...|++++|+..|+++++.+ +.+...|..++.++...| ++++|++.++++++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4455555555555555555555555555543 334445555555555555 45555555555554
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.88 E-value=0.00047 Score=52.96 Aligned_cols=94 Identities=17% Similarity=0.073 Sum_probs=63.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP---SEVTFCTLLR 547 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~ 547 (603)
-.+..++-..|+.++|+.+|++....|+... ...+-.+..++...|++++|+.++++..... +. +......+..
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHH
Confidence 3455667777888888888888887766533 3355667777788888888888888777652 22 2333344555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (603)
++...|+.++|++.+-..+.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 67777888888877766553
No 172
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=3.2e-05 Score=44.90 Aligned_cols=33 Identities=48% Similarity=0.842 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 261 TYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 261 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344455555555555555555555544444443
No 173
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.86 E-value=6.9e-05 Score=51.83 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC-cHHHHHHHHHhhc
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK-KYRECLNQFRHLL 602 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~l 602 (603)
++.+|..++..+...|++++|+..++++++.++. ++..+..++.++.+.| ++++|++.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 5678899999999999999999999999998765 8999999999999999 8999999999864
No 174
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00083 Score=56.58 Aligned_cols=94 Identities=11% Similarity=-0.022 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD--LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
....+..++..+...|++++|...|+++++....+. ...+..++.++.+.|++++|...++++.+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 355678888888899999999999999886542222 356777888888999999999999888886443 56667777
Q ss_pred HHHHHhcCCHhHHHHHH
Q 037409 158 INGLCAEGRIMEAARLF 174 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~ 174 (603)
...+...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 77777777755544433
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.85 E-value=8.6e-05 Score=50.59 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+..+...|++++|++.|+++++.. +.+...+..++.++...|++++|...++++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 444555566666666666666553 3345555556666666666666666666655543
No 176
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.85 E-value=3.1e-05 Score=44.94 Aligned_cols=33 Identities=55% Similarity=0.979 Sum_probs=26.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN 258 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 258 (603)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577888888888888888888888887777776
No 177
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.85 E-value=0.00038 Score=58.40 Aligned_cols=86 Identities=8% Similarity=-0.032 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCcchHH
Q 037409 60 ITSNEAVYFFDCMIKMKPS-PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFP--DLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
..+..+...+..+++.... .....|..++..+...|++++|+..|++++.....+ ...++..+..++...|++++|+
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~ 92 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKAL 92 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555432222 224556666666666777777777777766542111 1234555555556666666666
Q ss_pred HHHHHHHHC
Q 037409 137 VVLGRILRS 145 (603)
Q Consensus 137 ~~~~~~~~~ 145 (603)
..++++...
T Consensus 93 ~~~~~Al~~ 101 (168)
T CHL00033 93 EYYFQALER 101 (168)
T ss_pred HHHHHHHHh
Confidence 666555554
No 178
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.84 E-value=0.0012 Score=65.59 Aligned_cols=62 Identities=10% Similarity=-0.048 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
..|..+.......|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L-----~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDL-----EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44444444444455566666666655553 234555555555555566666666655555543
No 179
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.84 E-value=0.026 Score=52.58 Aligned_cols=435 Identities=12% Similarity=0.076 Sum_probs=224.7
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh
Q 037409 73 IKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTV 152 (603)
Q Consensus 73 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 152 (603)
++.+|+ |+.+|..++.-+..+|.+++..+.+++|..- ++--+.+|..-+..-....++.....+|.+.++... +..
T Consensus 35 IkdNPt-nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ld 110 (660)
T COG5107 35 IKDNPT-NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLD 110 (660)
T ss_pred hhcCch-hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHh
Confidence 455555 8999999999999999999999999999743 344566777777777778899999999999988744 567
Q ss_pred hHHHHHHHHHhcCCH------hHHHHHHHHHHh-cCCCCcH-HHHHHHHHHHH---hcC------ChHHHHHHHHHHHHh
Q 037409 153 TFNFLINGLCAEGRI------MEAARLFKKLNV-FACDPNV-VTFNTLINGLC---RTR------NTLVALKLFEEMVNE 215 (603)
Q Consensus 153 ~~~~l~~~~~~~g~~------~~A~~~~~~~~~-~~~~~~~-~~~~~l~~~~~---~~g------~~~~A~~~~~~~~~~ 215 (603)
.|...+....+.+.. ....+.|+-... .+++|-. ..|+..+..+- ..| +.+...+.+.+++..
T Consensus 111 LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 111 LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 777777654443311 122334444333 3444433 34554443322 233 344555666666643
Q ss_pred cCCccCCC-h-hhHH------HHHHHHHh-------cCChhHHHHHHHHHhh--CCCC----CChhhHHH----------
Q 037409 216 FGAICKPD-V-VTYN------SIIDGLCK-------DGFVDKAKELLLQMKD--RNIN----PNVITYNS---------- 264 (603)
Q Consensus 216 ~~~~~~~~-~-~~~~------~l~~~~~~-------~g~~~~a~~~~~~~~~--~~~~----~~~~~~~~---------- 264 (603)
|.+ . ..|+ .-+..... .--+-.|...++++.. .|.. .+..+++-
T Consensus 191 -----P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 191 -----PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred -----ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 111 1 1111 11111000 1113345555555432 1221 12222222
Q ss_pred -HHHHHHhc------CCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 265 -LICGFCCV------DDW-KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLM 336 (603)
Q Consensus 265 -l~~~~~~~------~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
.|..-... +.. ...--++++.... +......|..--..+...++-+.|....++.... .|. ....+.
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHH
Confidence 11110000 000 0111112221111 1222333333333344455555555554433221 122 111222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 037409 337 DGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK---DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG 413 (603)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (603)
..|...++.+.....|+...+. ...--..+..-.. .|+++.--+++-+-. ..-...|..++....+..
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHh
Confidence 3333444555555555544321 0000000000000 122222222111111 123456777777777777
Q ss_pred CHHHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHH
Q 037409 414 NLGDALKLIDKMQLND-VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLF 492 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 492 (603)
-.+.|..+|-+..+.+ +.++...++.++..+ ..|+...|..+|+--.... +.+..--+-.+..+...++-+.|..+|
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 7888888888887776 556667777777655 4577888888887655432 334444455666677778888888888
Q ss_pred HHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 493 HRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 493 ~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+..++. +..+ ..+|..++.--..-|+...+..+=+++.+.
T Consensus 490 etsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 490 ETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 865543 1112 456777777777778887777777777664
No 180
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=6.6e-05 Score=51.17 Aligned_cols=57 Identities=14% Similarity=0.208 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+.+.|++++|.+.++++++..+. ++..+..++.++.+.|++++|..+|++++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3577899999999999999999988765 99999999999999999999999999874
No 181
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.84 E-value=0.00061 Score=62.26 Aligned_cols=131 Identities=12% Similarity=0.043 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhcCCccCCChhhHHHH
Q 037409 152 VTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEFGAICKPDVVTYNSI 230 (603)
Q Consensus 152 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 230 (603)
.+|..++....+.+..+.|+++|.+..+.+ .-+...|......-.. .++.+.|.++|+...+. .+.+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCHHHHHHH
Confidence 467777777777777888888888877542 2233444444444233 45666688888888876 46677777788
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 231 IDGLCKDGFVDKAKELLLQMKDRNINPNV---ITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
+..+...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+..+.+++.+.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888887765 33222 46777777667777777777777776654
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.81 E-value=0.015 Score=51.70 Aligned_cols=56 Identities=7% Similarity=0.016 Sum_probs=28.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDN--GVQPDVVTFNAMINYNCKDGKMDKVNRLLELM 320 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 320 (603)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|......+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455556666666666555553 11222334445555555555555555544433
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.81 E-value=7.4e-05 Score=51.52 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=31.7
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
...|++++|+++|+++.+.. |.+...+..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566666666666666553 4455555666666666666666666666666544
No 184
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=4.1e-05 Score=44.03 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC
Q 037409 152 VTFNFLINGLCAEGRIMEAARLFKKLNVFACDP 184 (603)
Q Consensus 152 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 184 (603)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777776665
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.80 E-value=0.00062 Score=62.21 Aligned_cols=131 Identities=11% Similarity=0.036 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK-MGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
.+|..+++..-+.+..+.|..+|.++.+.+ .....+|...+..-.. .++.+.|..+|+...+. +..+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467778888888888888888888887553 3344555555555334 45666688888888776 34477778888888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcH---HHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNV---VTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
+...|+.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887754 23222 46777777777888888888888777765
No 186
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=4.8e-05 Score=43.72 Aligned_cols=30 Identities=40% Similarity=0.474 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 261 TYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290 (603)
Q Consensus 261 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 290 (603)
+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444333
No 187
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.77 E-value=0.0025 Score=49.01 Aligned_cols=93 Identities=17% Similarity=0.079 Sum_probs=56.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHH
Q 037409 440 YIDGLCKNGFVLEAVQVFQAIRNCKCELR--IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLC 515 (603)
Q Consensus 440 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~ 515 (603)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..+|++.....+.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667777777777777776654433 3455666677777777777777777776643321 1122233344566
Q ss_pred HcCChhHHHHHHHHHHH
Q 037409 516 KEGQMDKANDLLLDMEA 532 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~ 532 (603)
..|+.++|++.+-..+.
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 67777777777665554
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00063 Score=64.62 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=75.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 290 VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
.+.+......++..+....+++.+..++.+..... ...-+.|..++++.|.+.|..+.+++++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 34455566666666666666666666666665441 1122334456677777777777777777766666777777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (603)
+.|++.+.+.|++..|.++...|...+...+..++...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777777666665555555555554444444
No 189
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0051 Score=56.58 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=10.5
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 037409 373 ANCKDQKVEDAVCLYREML 391 (603)
Q Consensus 373 ~~~~~~~~~~A~~~~~~~~ 391 (603)
.|...+++++|.+.|.+..
T Consensus 44 ~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHH
Confidence 4555666666666665543
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.72 E-value=0.00068 Score=64.39 Aligned_cols=116 Identities=16% Similarity=0.114 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 037409 185 NVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNS 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 264 (603)
+......+++.+....+.+.+..++.+....... ...-..+..++++.|.+.|..++++.++..=...|+-||..+++.
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~-~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNC-SYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCccc-ccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 3344444444444444445555555444433111 111122333455555555555555555554444455555555555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMI 301 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 301 (603)
|++.+.+.|++..|.++...|...+...+..++..-+
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 5555555555555555555444444333333333333
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.063 Score=53.03 Aligned_cols=205 Identities=11% Similarity=0.058 Sum_probs=116.4
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHH----------HHHHHHhcCChhHHHHHHHHHhh
Q 037409 183 DPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNS----------IIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
.|.+..|..+.......-.++.|...|-+...-. .+..... -...-.--|++++|+++|-++-+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~dr 762 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADR 762 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccch
Confidence 5777788877777666666666666665443221 1111100 11122235788899988888776
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 037409 253 RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG-VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVT 331 (603)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 331 (603)
+. ..+..+.+.|||-...++++.--... -..-...|+.+...+.....+++|.+.+..-...
T Consensus 763 rD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-------- 825 (1189)
T KOG2041|consen 763 RD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-------- 825 (1189)
T ss_pred hh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------
Confidence 52 23566677788877777765421100 0112346777777777777888888777653211
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 411 (603)
...+.++....++++-+.+-..+ +.+....-.+..++.+.|.-++|.+.|-+... | ...+..|..
T Consensus 826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~ 890 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVE 890 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHH
Confidence 12344455555555544433333 33555566677777777777777766644321 1 123445666
Q ss_pred cCCHHHHHHHHHHH
Q 037409 412 VGNLGDALKLIDKM 425 (603)
Q Consensus 412 ~~~~~~a~~~~~~~ 425 (603)
.++|.+|.++-+..
T Consensus 891 LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 891 LNQWGEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHHHHHhc
Confidence 66777776665544
No 192
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.70 E-value=0.0001 Score=50.84 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=46.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 550 VQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 550 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.|++++|.++++++.+..+. +..+...++.+|.+.|++++|.+++++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5789999999999999998775 89999999999999999999999999875
No 193
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.67 E-value=0.00092 Score=60.94 Aligned_cols=132 Identities=11% Similarity=0.008 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCC-CChHHHHHHHHHHHhCCChhHHHHHHHHHhh----CCCC-CCHh
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIR----NCKCE-LRIETYNCLINGLCKMGRLKTACKLFHRLQH----KGPI-PDVV 505 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~ 505 (603)
.|..|...|.-.|+++.|+...+.-+ +.|-. ..-..+..+..++.-.|+++.|.+.++.... .|-. ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 44555556666788888877665432 22211 1234677788888888888888888876543 2211 2334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK----N-CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.-.|+..|.-..++++|+.++.+-+.. + ..-....+..|+.++...|..++|..+.+..++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5556777787778888888887765432 1 122455677888888888888888888777654
No 194
>PRK11906 transcriptional regulator; Provisional
Probab=97.67 E-value=0.004 Score=58.81 Aligned_cols=82 Identities=7% Similarity=-0.049 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 037409 450 VLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLD 529 (603)
Q Consensus 450 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 529 (603)
..+|.+.-+...+.+ +.|+.....+..+..-.++++.|...|++....+|. ...+|...+..+...|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344455555555554 455555555555555555666666666666665443 445555555555566666666666666
Q ss_pred HHHC
Q 037409 530 MEAK 533 (603)
Q Consensus 530 ~~~~ 533 (603)
.++.
T Consensus 398 alrL 401 (458)
T PRK11906 398 SLQL 401 (458)
T ss_pred Hhcc
Confidence 5554
No 195
>PRK15331 chaperone protein SicA; Provisional
Probab=97.66 E-value=0.0015 Score=52.42 Aligned_cols=89 Identities=15% Similarity=-0.046 Sum_probs=66.5
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
.-+...|++++|..+|.-+.-.++. |..-|..|+.++-..+++++|+..|..+...+ ..|+..+...+.++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 3345678888888888877776655 66667777777778888888888887776654 455666677788888888888
Q ss_pred HHHHHHHHHHH
Q 037409 557 KVVVLLHKMAA 567 (603)
Q Consensus 557 ~a~~~~~~~~~ 567 (603)
.|...++..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 88888888776
No 196
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.66 E-value=0.00093 Score=59.82 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPSEVTFCTL 545 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l 545 (603)
..|...+....+.|++++|...|+.+++..|... ...+-.++.+|...|++++|...|+++++.. -+.....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 4455555555667899999999999988655421 3467778888899999999999999998752 11235667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.++...|+.++|.++++++++..+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88888899999999999998876554
No 197
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.61 E-value=0.00053 Score=62.43 Aligned_cols=131 Identities=14% Similarity=0.052 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCHh
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSK----GCR-HDVYSYNILINANCKDQKVEDAVCLYREMLS----ER-IRPSVI 400 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~ 400 (603)
.|..|.+.|.-.|+++.|+...+.-+.. |-. .....+..+.+++.-.|+++.|.+.|..... .| ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4556666667777888887666543321 211 1224566677778888888888887765432 11 112334
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh----C-CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQL----N-DVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
+.-+|...|.-..++++|+.++.+-.. . +..-....+.+|..++...|..++|+.+.+..+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 555677777777778888887765422 1 112244567778888888888888877665544
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.60 E-value=0.064 Score=50.14 Aligned_cols=446 Identities=11% Similarity=0.068 Sum_probs=238.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 102 SLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
++-++.... |.|...|..+++-+..+|.+++.+++++++..- ++--..+|...+.+-...+++.....+|.+....
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 444444433 778889999999999999999999999999764 2224557887787777788999999999998876
Q ss_pred CCCcHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcCCccCCChhhHHHHHHH---HHhcCC------hhHHHHH
Q 037409 182 CDPNVVTFNTLINGLCRTRNT------LVALKLFEEMVNEFGAICKPDVVTYNSIIDG---LCKDGF------VDKAKEL 246 (603)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~------~~~a~~~ 246 (603)
..+...|...+.-..+.+.. ..-.+.|+-.+.... ..+.....|+..+.. .-..|. ++...+.
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~-~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAI-FEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhccc-ccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 44566777766655554321 223344554444211 112233344444332 223344 4455566
Q ss_pred HHHHhhCCCCCChhhHHH------HHHHH---HhcC----CHHHHHHHHHHHHHC--CCC----CCHHHHHH--------
Q 037409 247 LLQMKDRNINPNVITYNS------LICGF---CCVD----DWKEAKCLFIEMMDN--GVQ----PDVVTFNA-------- 299 (603)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~------l~~~~---~~~~----~~~~A~~~~~~~~~~--~~~----~~~~~~~~-------- 299 (603)
+.++...-+..-...|+- =+... --.| -+..|...++++... |.. -+..+++.
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 666665322111112211 11100 0011 134455555555431 211 11122222
Q ss_pred ---HHHHHHhcC-----C--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHH
Q 037409 300 ---MINYNCKDG-----K--MDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNI 369 (603)
Q Consensus 300 ---l~~~~~~~~-----~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (603)
.|..-...| + .....-++++.... +...+..|.-.-.-+...++-+.|++........ .+..--.
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~----spsL~~~ 338 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM----SPSLTMF 338 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC----CCchhee
Confidence 111111110 0 00111111111111 1111222222222233445555665554443322 2221112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 037409 370 LINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQ---VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK 446 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (603)
+-..|.-..+.+.....|+...+. ...--..+.+-+. .|+++.-.+++-.-+ ..-...|..++....+
T Consensus 339 lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r 409 (660)
T COG5107 339 LSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLR 409 (660)
T ss_pred HHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHH
Confidence 223333344444444455544331 0000001111111 122322222211111 1134567778888888
Q ss_pred CCCHHHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH
Q 037409 447 NGFVLEAVQVFQAIRNCK-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND 525 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 525 (603)
..-++.|..+|-++.+.+ ..+++.++++++..++ .|+...|.++|+--...-+. +...-+-.+..+..-++-+.|..
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d-~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD-STLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCcHHHHHH
Confidence 888999999999999887 5678888999998775 68889999999977665332 33333556667778899999999
Q ss_pred HHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 526 LLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 526 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
+|++.+.. +..+ ..+|..++.--..-|+...+..+-+++...-+
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~p 533 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVP 533 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcC
Confidence 99977654 2333 56788888888888999888888888876543
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.046 Score=47.22 Aligned_cols=131 Identities=12% Similarity=0.048 Sum_probs=90.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----ChHHHHHHH
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL-----RIETYNCLI 476 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~ 476 (603)
.+.++..+.-.|.+.-...++++.++...+.++.....++..-.+.|+.+.|...|++..+..-.. +..+..+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345566666677777777888888777666677777777777778888888888888766532222 233333344
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..|.-.+++..|.+.+.++...+.. |+...|.-.-+..-.|+..+|++.++.|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555667788888888888776655 6666676666677778888888888888775
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.51 E-value=0.00044 Score=48.43 Aligned_cols=59 Identities=8% Similarity=-0.000 Sum_probs=34.9
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..|.+.+++++|++.+++++..+ |.+...+...+.++.+.|++++|.+.+++.++.++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 34555666666666666666654 444555555666666666666666666666655443
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.50 E-value=0.003 Score=56.60 Aligned_cols=98 Identities=13% Similarity=0.049 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CCHhHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL--RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PDVVTCSTMI 511 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~ 511 (603)
.|........+.|++++|...|+.+.+..... .+..+..++.+|...|++++|...|+.+.+..+. .....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 34444444455678888888888877654211 1356777888888888888888888888765332 1234455566
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.++...|+.++|..+|+++++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888888888888775
No 202
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0025 Score=58.61 Aligned_cols=93 Identities=8% Similarity=0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
++..+..++.+.+++.+|++...+.+..+ ++|...+..-+.+|...|+++.|+..|+++++..+. +..+-..++.+-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~--Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS--NKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHH
Confidence 34445555555555555555555555554 445555555555555555555555555555554433 444444444444
Q ss_pred HcCCcHHHH-HHHHHhh
Q 037409 586 SKDKKYREC-LNQFRHL 601 (603)
Q Consensus 586 ~~~g~~~eA-~~~~~~~ 601 (603)
.+..++.+. .++|.+|
T Consensus 336 ~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 444433333 4444444
No 203
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0021 Score=47.37 Aligned_cols=76 Identities=16% Similarity=0.264 Sum_probs=44.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 230 IIDGLCKDGFVDKAKELLLQMKDRNI-NPNVITYNSLICGFCCVD--------DWKEAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 230 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
.|..+...+++.....+|+.+++.|+ -|+..+|+.++...++.. +.-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555666666666666666666 666666666666555432 123445556666666666666666665
Q ss_pred HHHHH
Q 037409 301 INYNC 305 (603)
Q Consensus 301 ~~~~~ 305 (603)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55443
No 204
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.46 E-value=0.0002 Score=40.00 Aligned_cols=26 Identities=46% Similarity=0.827 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 262 YNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 262 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.019 Score=49.73 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=9.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNS 109 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~ 109 (603)
+..+...|++.+|+..|+.+..
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~ 33 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLID 33 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 206
>PRK15331 chaperone protein SicA; Provisional
Probab=97.44 E-value=0.012 Score=47.38 Aligned_cols=88 Identities=13% Similarity=-0.035 Sum_probs=68.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
-+...|++++|..+|+-+.-.+ +.+..-+..|..++-..+++++|...|......++. |+..+-..+.++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 3457788888888888877655 456777788888888888888888888877665543 55556667888888888888
Q ss_pred HHHHHHHHHH
Q 037409 523 ANDLLLDMEA 532 (603)
Q Consensus 523 A~~~~~~~~~ 532 (603)
|...|+..++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 8888888887
No 207
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.43 E-value=0.014 Score=48.69 Aligned_cols=194 Identities=13% Similarity=-0.008 Sum_probs=112.3
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM 129 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (603)
|=++.+..+-|-.+-|+--|.+.+...|. -+.++|-++--+...|+++.|.+.|+...+.+ |....+...-+-.+.--
T Consensus 69 fERGvlYDSlGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~ 146 (297)
T COG4785 69 FERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG 146 (297)
T ss_pred HHhcchhhhhhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeec
Confidence 33444455567778888888888887765 57788888888899999999999999998876 44444444444445567
Q ss_pred CCcchHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 037409 130 GITSGAFVVLGRILRSCFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKL 208 (603)
Q Consensus 130 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (603)
|++.-|.+-+.+..+.++. |-...|..+.. +.-++.+|..-+.+--+ ..|..-|...+..+.- |+.. ...+
T Consensus 147 gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l 218 (297)
T COG4785 147 GRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETL 218 (297)
T ss_pred CchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHH
Confidence 8888888877777666433 22334443332 23466666654433222 2344555544433321 2211 1122
Q ss_pred HHHHHHhcC---CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 209 FEEMVNEFG---AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 209 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
++.+..... ...+.-..+|--+...+...|+.++|..+|+-....
T Consensus 219 ~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 219 MERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 333332110 000011345556666667777777777777666543
No 208
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00022 Score=39.82 Aligned_cols=29 Identities=45% Similarity=0.806 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRN 254 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 254 (603)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666554
No 209
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.40 E-value=0.004 Score=45.97 Aligned_cols=78 Identities=18% Similarity=0.323 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhhHH
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDNGV-QPDVVTFNAMINYNCKDG--------KMDKVNRLLELMIQRGVNPDTVTYN 333 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 333 (603)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-..+.+|+.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3345555566888888888888888888 788888888887766543 2334556667777777777777777
Q ss_pred HHHHHHH
Q 037409 334 SLMDGFC 340 (603)
Q Consensus 334 ~l~~~~~ 340 (603)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 7766554
No 210
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.39 E-value=0.12 Score=48.46 Aligned_cols=145 Identities=18% Similarity=0.167 Sum_probs=87.2
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHH---HHhCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHH----HHHh---CCChh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDG---LCKNGF-VLEAVQVFQAIRNCKCELRIETYNCLIN----GLCK---MGRLK 486 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~ 486 (603)
-+.+|......++. .......++.+ +-+.|. -++|+.+++.+.+.. +-|...-|.+.. +|.. ...+.
T Consensus 361 yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 361 YLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 35556666554433 11222223222 333444 788888888888643 444444333322 2221 22334
Q ss_pred HHHHHHHHHhhCCCCC----CHhHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 487 TACKLFHRLQHKGPIP----DVVTCSTMIHW--LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
.-..+-+-+.+.|+.| +...-|.+..+ +..+|++.++.-.-.-+.+ +.|++.++..++-+.....++++|..
T Consensus 439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~ 516 (549)
T PF07079_consen 439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWE 516 (549)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444445556654 33445556555 5578999998877776666 56899999999999999999999999
Q ss_pred HHHHHH
Q 037409 561 LLHKMA 566 (603)
Q Consensus 561 ~~~~~~ 566 (603)
+++.+-
T Consensus 517 ~l~~LP 522 (549)
T PF07079_consen 517 YLQKLP 522 (549)
T ss_pred HHHhCC
Confidence 887754
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.0026 Score=55.51 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-C-CCCHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-C-VPSEVTFCTLL 546 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~ 546 (603)
.|+.-+.. .+.|++..|...|...++..|.- ....+-.|+.++...|++++|..+|..+.+.- - +.-+..+..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45554443 35666777777777777654331 12234456667777777777777777766542 0 11245666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+..+.|+.++|..+|+++.++-+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 7777777777777777777765443
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.39 E-value=0.00053 Score=48.00 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=50.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
...|.+.+++++|.+++++++..++. ++..+...+.++.+.|++++|.+.+++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 46789999999999999999997765 88999999999999999999999999875
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.38 E-value=0.028 Score=48.70 Aligned_cols=58 Identities=10% Similarity=0.055 Sum_probs=25.8
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 037409 122 LINCLCKMGITSGAFVVLGRILRSCFTPN--TVTFNFLINGLCAEGRIMEAARLFKKLNV 179 (603)
Q Consensus 122 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 179 (603)
.+..+...|++.+|...|+.+....+... ..+...++.++.+.|++++|...+++..+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555555554422211 12333344455555555555555555444
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.35 E-value=0.0006 Score=48.47 Aligned_cols=61 Identities=11% Similarity=0.042 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK--NCVPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+++.++.+|...|++++|+..++++++. ...++ ..++..++.++...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445555555555555555555554432 00111 2233444444444555555554444443
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.23 E-value=0.066 Score=52.37 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
.++...+...+.+...+.-|.++|.+|-+ ...+.......++|++|..+.++.-+. .|| +|...++-
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHH
Confidence 34455555555566677777777777753 124455667778888888777766542 233 34445555
Q ss_pred HHhcCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHK 564 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~ 564 (603)
+++..++++|.+.|.+
T Consensus 814 LAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 814 LAENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhhhHHHHHHHHHH
Confidence 6666666666554433
No 216
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.18 E-value=0.012 Score=44.46 Aligned_cols=94 Identities=6% Similarity=-0.084 Sum_probs=74.7
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHh
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF---VLNLLINCLCK 128 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~ 128 (603)
.+-..+..|++++|++.|.+++..-|. +..+||.-..++--+|+.++|++-++++++..-+.... .|..-...|..
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 333445679999999999999998765 78889999999999999999999999998863232322 34444557888
Q ss_pred cCCcchHHHHHHHHHHCC
Q 037409 129 MGITSGAFVVLGRILRSC 146 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~ 146 (603)
.|+-+.|+.-|+...+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 899999999998888876
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.17 E-value=0.018 Score=46.95 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA-----AEKLVVSDLSLS 578 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 578 (603)
+...++..+...|++++|++++++++... |-+...+..++.+|...|+..+|.+.|+++. +.|+. |++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~-Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE-PSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC-cCHHHH
Confidence 45667777888899999999999999876 6678889999999999999999999988875 35777 766654
No 218
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.16 E-value=0.025 Score=55.92 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=62.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHH-HHHHHHHHcCChhHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCS-TMIHWLCKEGQMDKANDLLLDMEAKN--C-VPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
.+.+.|.++++.+.+. -|+...|. .-++.+...|+.++|++.|+++.... . +.....+.-+++.+.-.++|++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3556666666666664 23433333 23344556666667766666554311 0 11233455566666666777777
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcH-------HHHHHHHHhhc
Q 037409 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY-------RECLNQFRHLL 602 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~eA~~~~~~~l 602 (603)
...+.++.+.+-- .....+...+-++...|+. ++|.+++++++
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 7777666654332 1222233344455566666 66666666554
No 219
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.15 E-value=0.21 Score=46.38 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh
Q 037409 367 YNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK 446 (603)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (603)
.+.-+.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++-..+.+. .-++.-|...+.+|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444555555555555544432 24555555666666666666555543321 1123455555666666
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.|+..+|..+...+ + +..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 66666655554431 1 13344455555665555544
No 220
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.15 Score=44.24 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH-----H
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI-----D 442 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~ 442 (603)
+.++.++.-.+.+.-....+++.++...+.++.....+++.-.+.|+.+.|...|+...+..-..+..+.+.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444455555555555555555444455555555555555566666665555444322222222222211 2
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
.+.-.+++..|...+.++...+ +.++...|.-.-+..-.|+..+|.+.++.|.+.
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333445555555555555443 334444444444444455556666666655553
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.12 E-value=0.028 Score=45.79 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTFC 543 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 543 (603)
.+...++..+...|++++|...++.+...+|- |...|..++.+|...|+..+|.+.|+++.+ .|+.|++.+-.
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 35566777788899999999999999998776 888999999999999999999999988753 48888877643
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.11 E-value=0.41 Score=48.82 Aligned_cols=178 Identities=16% Similarity=0.126 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPD--LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGL 161 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 161 (603)
....+..+.+...++-|+.+.+.- +..++ .......+.-+.+.|++++|...|-+.+.. .+|. .++.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence 345677777888888888775443 22222 123444455667889999998888666543 2222 245556
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
....+..+-..+++.+.+.|+. +..--..|+.+|.+.++.++-.+..+... .+ . -..-....+..+.+.+-.+
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g---~--~~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KG---E--WFFDVETALEILRKSNYLD 480 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cc---c--eeeeHHHHHHHHHHhChHH
Confidence 6777777888888888888744 44445678899999999887666655443 11 0 0112445677777777777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
+|..+-..... .......++ -..+++++|+..+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77766655433 233333333 3568888898888765
No 223
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.38 Score=48.39 Aligned_cols=338 Identities=11% Similarity=0.072 Sum_probs=155.5
Q ss_pred cCCCCcHHHHH-----HHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh--hHHHHHH-HHHh
Q 037409 180 FACDPNVVTFN-----TLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV--DKAKELL-LQMK 251 (603)
Q Consensus 180 ~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~~-~~~~ 251 (603)
.|++-+..-|. .++.-+...+.+..|+++-+.+.... . .+...|......+.+..+. +++.+.. +++.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~---~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls 501 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE---S-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLS 501 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc---c-cccHHHHHHHHHHHhccCccchHHHHHHHHHhc
Confidence 35555555554 34566677788888888877765432 1 1244555556555555322 2222222 2332
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 037409 252 DRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ----PDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP 327 (603)
Q Consensus 252 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 327 (603)
.. . ....+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+-...++-.+...-
T Consensus 502 ~~-~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~--- 576 (829)
T KOG2280|consen 502 AK-L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL--- 576 (829)
T ss_pred cc-C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---
Confidence 21 1 34566777777777888888888777542221100 011122233444445555555555444443320
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH--HHHh----CCCCCCHhh
Q 037409 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR--EMLS----ERIRPSVIT 401 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~~----~~~~~~~~~ 401 (603)
+...+. ....+...|..+|.+..++. +.. .+-..|.. ++-..++..|. .... .+..|+
T Consensus 577 ~~s~l~------~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~--- 640 (829)
T KOG2280|consen 577 NRSSLF------MTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA--- 640 (829)
T ss_pred HHHHHH------HHHHhchhhhHHHHHHHHhh---chh---hhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---
Confidence 111111 11123344555555555431 111 11112222 22222222211 1000 111122
Q ss_pred HHHHHHHHHhcCCHHH----------HHHHHHHHh-hCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChH
Q 037409 402 YNTLLSGLFQVGNLGD----------ALKLIDKMQ-LNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIE 470 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~----------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 470 (603)
.......+.+.....- -+.+.+.+. +.+..-...+.+--+.-+...|+..+|.++-.+.. -|+-.
T Consensus 641 lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr 716 (829)
T KOG2280|consen 641 LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKR 716 (829)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Ccchh
Confidence 2222333333222111 111111111 11211222233344445556677777766655443 45666
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.|..-+.+++..+++++-+++-+... ++.-|.-...+|.+.|+.++|..++-+.... . -...+|.
T Consensus 717 ~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~ 781 (829)
T KOG2280|consen 717 LWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYL 781 (829)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHH
Confidence 66666667777777766665544443 2334555666677777777777666554321 1 3445666
Q ss_pred hcCCHHHHHHH
Q 037409 551 QNNKKSKVVVL 561 (603)
Q Consensus 551 ~~g~~~~a~~~ 561 (603)
+.|++.+|.+.
T Consensus 782 ~~~~~~eAad~ 792 (829)
T KOG2280|consen 782 RVGDVKEAADL 792 (829)
T ss_pred HhccHHHHHHH
Confidence 66666666554
No 224
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.12 Score=45.92 Aligned_cols=154 Identities=12% Similarity=0.048 Sum_probs=102.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
.....|++.+|...|+...... +.+......++.+|...|+.+.|..++..+..............-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4556788888888888887655 445677778888888888888888888887654222222222233445555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
...+-++.-.. +.|...-..++..+...|+.++|.+.+=.+++++..-.+...-..++.++..-|.-+.+...++
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 55555555442 4477777788888888899988888877777554333477777788888887775554444433
No 225
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.1 Score=46.30 Aligned_cols=149 Identities=15% Similarity=0.087 Sum_probs=80.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRI 167 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 167 (603)
.......|++.+|...|..+.... +-+......++.+|...|+.+.|..++..+..............-+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344566777777777777776654 3345556666677777777777777776665442221122212223334444444
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
.+...+-.+.... +.|...-..+...+...|+.++|.+.+-.+++.+. -..|...-..++..+...|..+
T Consensus 220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~--~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDR--GFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc--cccCcHHHHHHHHHHHhcCCCC
Confidence 4444433333331 22555556666666677777777776666665532 1233444555555555555333
No 226
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.38 Score=48.35 Aligned_cols=368 Identities=13% Similarity=0.080 Sum_probs=194.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHhc-----CCccCCChhhH-----HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEF-----GAICKPDVVTY-----NSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN 263 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 263 (603)
.++.+..++++-..+.+.+.-.+ +.+.+.+..-| ..++.-+...+.+..|.++-..+...-.. ....|.
T Consensus 397 k~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~ 475 (829)
T KOG2280|consen 397 KASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLL 475 (829)
T ss_pred ccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHH
Confidence 34445556666555554443221 11133333333 34566677778888888887776543222 256666
Q ss_pred HHHHHHHhcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHhhHHHHHH
Q 037409 264 SLICGFCCVDDW--KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN----PDTVTYNSLMD 337 (603)
Q Consensus 264 ~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 337 (603)
.....+.+..+. +++++..++=+.... -+-.+|..+.......|+.+-|..+++.=...+.. .+..-+...+.
T Consensus 476 ~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 476 EWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 667766666332 233333333222212 23456777777777888888888877653222111 01111223333
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (603)
-+...|+.+....++-.+..+- +... .+.-..+...|..+|.+..+.. +.. .+-+.|....+...
T Consensus 555 kaies~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~ 619 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQA 619 (829)
T ss_pred HHHhcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhh
Confidence 3444555555554444443320 1111 1111234445566666555431 111 12222333233222
Q ss_pred HHHH-HHHHhh-CCCCCCHHhHHHHHHHHHhCCCHH---HH-------HHHHHHHHH-cCCCCChHHHHHHHHHHHhCCC
Q 037409 418 ALKL-IDKMQL-NDVVPDSFTFATYIDGLCKNGFVL---EA-------VQVFQAIRN-CKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 418 a~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~---~a-------~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
.-.+ ++.... ..+.+-..........+.+..... +| +.+.+.+.. .+..-..-+.+.-+.-+...|+
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~ 699 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQ 699 (829)
T ss_pred hhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccc
Confidence 2211 111100 001111222333444444433311 11 222222222 2323334455666667788899
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
..+|.++-.+.. -||...|..-+.+++..++|++-+++-+... ++.-|.....+|.+.|+.++|.+++-+
T Consensus 700 ~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYipr 769 (829)
T KOG2280|consen 700 NKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPR 769 (829)
T ss_pred hHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhc
Confidence 999999877776 3688899999999999999988766655443 255677888999999999999988865
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 565 MAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
.-. .. ..+.+|.+.|++.||.+.-
T Consensus 770 v~~------l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 770 VGG------LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cCC------hH----HHHHHHHHhccHHHHHHHH
Confidence 431 11 5788999999999997653
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.08 E-value=0.17 Score=44.06 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNG--LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
..|-.-+..-.+.|++++|.+.|+.+.... -+....+...++-++.+.++++.|+..+++.++..+......|-..+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344444555566777777777777776553 112233455556666777777777777777776654433334444444
Q ss_pred HHH
Q 037409 160 GLC 162 (603)
Q Consensus 160 ~~~ 162 (603)
+++
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 433
No 228
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.27 Score=45.74 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLV 342 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 342 (603)
+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-.++... .-.+.-|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444445555555555544432 34555555555555555555554443221 11234455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 037409 343 GRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCL 386 (603)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 386 (603)
|+..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 5555555544441 113344455555555555443
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.04 E-value=0.031 Score=43.94 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=23.4
Q ss_pred HhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+.|++++|.+.|+.+...-+.. ....--.++.+|.+.|++++|+..+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34445555555555444432211 1222333444444455555555555544444
No 230
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.99 E-value=0.021 Score=48.06 Aligned_cols=34 Identities=32% Similarity=0.314 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 037409 310 MDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVG 343 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 343 (603)
-+-|++++++|...|+.||..++..+++.+.+.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 3456667777777777777777777766665544
No 231
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.99 E-value=0.32 Score=45.65 Aligned_cols=76 Identities=14% Similarity=0.023 Sum_probs=36.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 369 ILINANCKDQKVEDAVCLYREMLSER---IRPSVITYNTLLSGLFQ---VGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|+.++..+......+++.++..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33344555666666666666655431 11111111222333444 5666666666665444344455555555555
Q ss_pred HH
Q 037409 443 GL 444 (603)
Q Consensus 443 ~~ 444 (603)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 232
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.97 E-value=0.0022 Score=45.52 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCC-HHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVSD-LSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++..++.+|...|++++|+..++++++. +...|. ..++..++.++...|++++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444444421 111011 23444444444444444444444444
No 233
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.97 E-value=0.027 Score=47.42 Aligned_cols=98 Identities=24% Similarity=0.293 Sum_probs=63.8
Q ss_pred ChhhHHHHHHHHHh-----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc----------------CCHHHHHHH
Q 037409 223 DVVTYNSIIDGLCK-----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCV----------------DDWKEAKCL 281 (603)
Q Consensus 223 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~A~~~ 281 (603)
+..+|..+++.|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 44455555555543 344555555566666666666666666666655321 234678999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHH
Q 037409 282 FIEMMDNGVQPDVVTFNAMINYNCKDGK-MDKVNRLLELM 320 (603)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~ 320 (603)
+++|...|+-||..++..++..+.+.+. ..+..+++-.|
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999999999999999999999987765 33344443333
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.02 Score=52.87 Aligned_cols=98 Identities=15% Similarity=0.053 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...++++..+|.+.+++..|+....+.++.++. |...+-.-+.++...|+++.|+..|+++++.. |.|..+-..|+.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 346788888999999999999999999998765 88888888999999999999999999999964 4455555556555
Q ss_pred HHhcCCH-HHHHHHHHHHHHC
Q 037409 549 FVQNNKK-SKVVVLLHKMAAE 568 (603)
Q Consensus 549 ~~~~g~~-~~a~~~~~~~~~~ 568 (603)
--+.... ++..++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 5444444 4557888888754
No 235
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.92 E-value=0.48 Score=46.51 Aligned_cols=133 Identities=12% Similarity=0.141 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDL-FVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLI 158 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 158 (603)
+...|..++.---...+.+.+..++..++.. -|-. -.|......-.+.|..+.+..+|++.+.. ++.+...|....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 3445666665444444555566666666643 2322 24444455556667777777777766654 334555555554
Q ss_pred HHHH-hcCCHhHHHHHHHHHHhc-CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 159 NGLC-AEGRIMEAARLFKKLNVF-ACD-PNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 159 ~~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
..+. ..|+.+.....|+..... |.+ .+...|...+..-...+++.....+++.+++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4333 345666666666665542 211 23345666666666666666666666666653
No 236
>PRK11906 transcriptional regulator; Provisional
Probab=96.90 E-value=0.083 Score=50.33 Aligned_cols=158 Identities=10% Similarity=0.074 Sum_probs=109.5
Q ss_pred hhhhhhhccCC---CHHHHHHHHHHHH---hCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCC
Q 037409 50 FLNDRHKSGNI---TSNEAVYFFDCMI---KMKPSPGMTSFTILLTMLAK---------NKQYDTVVSLFKRLNSNGLFP 114 (603)
Q Consensus 50 ~l~~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~ 114 (603)
+++++.....+ +.+.|+.+|.+++ ..+|. ...+|..+...+.. ..+..+|....+++++.+ +.
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~ 336 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TV 336 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CC
Confidence 56666443333 4568999999999 65554 34555544444332 234567788888888887 78
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHH---HHH
Q 037409 115 DLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVT---FNT 191 (603)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~ 191 (603)
|+.+...++.+..-.++++.|..+|++.....+. ...+|........-+|+.++|.+.+++..+. .|.... ...
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~ 413 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKE 413 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHH
Confidence 9999999999888889999999999999988544 4556666666677799999999999997765 443322 222
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 037409 192 LINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
.+..|+. ...+.|+++|-+-.
T Consensus 414 ~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 414 CVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHHHcC-CchhhhHHHHhhcc
Confidence 3335554 44677777765543
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.90 E-value=0.24 Score=46.54 Aligned_cols=164 Identities=9% Similarity=-0.025 Sum_probs=85.8
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHCC---CCCCHhhHHHHHHHHHh---cCCHhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 120 NLLINCLCKMGITSGAFVVLGRILRSC---FTPNTVTFNFLINGLCA---EGRIMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 120 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
..++-+|....+++.-+++.+.+.... ......+--..+-++.+ .|+.++|++++..+......++..+|..++
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666666666666665541 11122222333444445 566666666666644333355556666555
Q ss_pred HHHHh---------cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh-h---HHHHHH---H-HHhhCC--
Q 037409 194 NGLCR---------TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV-D---KAKELL---L-QMKDRN-- 254 (603)
Q Consensus 194 ~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~---~a~~~~---~-~~~~~~-- 254 (603)
+.|-. ....++|+..|.+.-+. .++...--.++..+...|.. + +..++- . .+.+.|
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~-----~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI-----EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC-----CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 54432 12356777777777664 24433322233333333321 1 112222 1 122233
Q ss_pred -CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 255 -INPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 255 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
-..+-..+.+++.+..-.|+.++|.+..++|...
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 2234555677788888888999999988888876
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.88 E-value=0.0054 Score=57.90 Aligned_cols=64 Identities=11% Similarity=0.078 Sum_probs=57.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS-E---VTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+...|+.++.+|...|++++|+..|++.++.+ |+ . .+|..++.+|...|+.++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57789999999999999999999999999975 55 3 35999999999999999999999999985
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.86 E-value=0.15 Score=50.10 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=52.9
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHh--------
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVV-------- 505 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------- 505 (603)
..+...+...+.+...+.-|.++|..+-+. ..++......+++.+|..+.++..+. .||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 334444444555556666677776665432 24555666677777777777766653 22321
Q ss_pred ---HHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 506 ---TCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 506 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
-|...-.+|.+.|+-.+|.++++++...
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1233345667778888888888877654
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.84 E-value=0.021 Score=54.04 Aligned_cols=65 Identities=12% Similarity=-0.079 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDL---FVLNLLINCLCKMGITSGAFVVLGRILRS 145 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 145 (603)
+...|+.+..+|.+.|++++|+..|+++++.+ +.+. .+|..+..+|...|++++|+..++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555555443 2222 23455555555555555555555555543
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.82 E-value=0.34 Score=43.34 Aligned_cols=226 Identities=18% Similarity=0.106 Sum_probs=147.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 342 VGRISRARELFVSMVSKGCRH-DVYSYNILINANCKDQKVEDAVCLYREMLSE-RIRPSVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
.+....+...+.......... ...........+...+....+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355666666666666553221 2455666777788888888888888777652 22335556666677777778888888
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHH-HHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037409 420 KLIDKMQLNDVVPDSFTFATYID-GLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLINGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (603)
..+.........+. ........ .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 88888776544431 12222222 67788888888888888765221 1233444445555667788888888888888
Q ss_pred hCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 497 HKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 497 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
..........+..+...+...++++.|...+....... +.....+..+...+...|..+++...+++.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 75322135667777778888888888888888888753 2234555556666666677888888888877643
No 242
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.73 E-value=0.68 Score=45.53 Aligned_cols=118 Identities=9% Similarity=0.030 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCcchHHHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL-CKMGITSGAFVVL 139 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~ 139 (603)
+.+.++..++.++..-|. ----|......=.+.|..+.+.++|++.+. +++.+...|...+..+ ...|+.+..+..|
T Consensus 60 ~~~~~r~~y~~fL~kyPl-~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPL-CYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 457788888888876543 233577777777889999999999999985 4566777777666544 3567777788888
Q ss_pred HHHHHC-CCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc
Q 037409 140 GRILRS-CFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVF 180 (603)
Q Consensus 140 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 180 (603)
+++... |.. .+...|...+..-..++++.....+++++.+.
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 887764 211 24567888888888899999999999999864
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.67 E-value=0.043 Score=49.68 Aligned_cols=228 Identities=7% Similarity=-0.001 Sum_probs=127.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHhCC-CCCCHhhHHHHHHHHHh
Q 037409 339 FCLVGRISRARELFVSMVSKG--CRHDVYSYNILINANCKDQKVEDAVCLY----REMLSER-IRPSVITYNTLLSGLFQ 411 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~-~~~~~~~~~~l~~~~~~ 411 (603)
+...++.++|+..+.+.+.+- ...--.++..+..+.+..|.+++++..- +-..+.. -..-...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887776641 1112234555666777777777665432 2222210 00011234444445555
Q ss_pred cCCHHHHHHHHHHHhh-CCCCCC---HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---C--CChHHHHHHHHHHHhC
Q 037409 412 VGNLGDALKLIDKMQL-NDVVPD---SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---E--LRIETYNCLINGLCKM 482 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~ 482 (603)
..++.+++.+-+.-.. .|..|. ......+..+....+.++++++.|+...+.-. . ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 5555555555443332 222221 12333455566666778888888887764211 1 1235677788888888
Q ss_pred CChhHHHHHHHHHhhC----CCCCCH------hHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHK----GPIPDV------VTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVP-SEVTFCTLLR 547 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~----~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~ 547 (603)
.++++|.-+..++.+. ++. |. .+.-.|.-++...|+.-+|.+.-++..+. |-.+ .......++.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 8888887777666542 222 21 12233445666778777777777766543 3122 2334556777
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (603)
.|...|+.+.|..-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 78888888888777777763
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.046 Score=41.51 Aligned_cols=91 Identities=15% Similarity=0.047 Sum_probs=54.2
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCC
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE---VTFCTLLRGFVQNNK 554 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~ 554 (603)
+....|+++.|++.|.+.+..-|+ +...||.-..++.-+|+.++|++-++++++..-+... ..|..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 445566666666666666665444 5666666666666667777776666666665212221 123334445666666
Q ss_pred HHHHHHHHHHHHHCC
Q 037409 555 KSKVVVLLHKMAAEK 569 (603)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (603)
.+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 667766666666554
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.61 E-value=0.062 Score=48.18 Aligned_cols=150 Identities=13% Similarity=0.081 Sum_probs=77.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhCCCHH
Q 037409 376 KDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS----FTFATYIDGLCKNGFVL 451 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 451 (603)
..|+..+|...++++++. .+.|...+...=.+|...|+.+.-...++++... ..++. ..-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 355566666666666654 3335555555556666666666666666665432 11221 11122223344566666
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC----CCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI----PDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
+|++.-++..+.+ +.|.-.-.+....+...|++.++.++..+-... .+ .-...|-...-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 6666666665544 445555555666666666666666665544321 11 00111222233344556666666666
Q ss_pred HH
Q 037409 528 LD 529 (603)
Q Consensus 528 ~~ 529 (603)
+.
T Consensus 271 D~ 272 (491)
T KOG2610|consen 271 DR 272 (491)
T ss_pred HH
Confidence 54
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.075 Score=47.67 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=76.1
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHhcCC
Q 037409 126 LCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTF----NTLINGLCRTRN 201 (603)
Q Consensus 126 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~ 201 (603)
+...|+..+|...++++++..++ |...++..=.++...|+.+.-...++++.-.- .+|...| ..+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhcc
Confidence 34455566666666666555332 55555555555555666665555555554321 1222111 122233445566
Q ss_pred hHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 037409 202 TLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR---NINPNVITYNSLICGFCCVDDWKEA 278 (603)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A 278 (603)
+++|.+.-++..+.+ +.|...-.++...+.-.|+..++.+...+-... +.-.-...|--..-.+...+.++.|
T Consensus 191 y~dAEk~A~ralqiN----~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN----RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred chhHHHHHHhhccCC----CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 666666666665543 345555555555566666666666655443221 1111122333334444555666666
Q ss_pred HHHHHH
Q 037409 279 KCLFIE 284 (603)
Q Consensus 279 ~~~~~~ 284 (603)
+++|+.
T Consensus 267 leIyD~ 272 (491)
T KOG2610|consen 267 LEIYDR 272 (491)
T ss_pred HHHHHH
Confidence 666654
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.56 E-value=0.27 Score=48.76 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=82.7
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC---CCCCHhHHHHHHHHHHHcCChhHH
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG---PIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
..+.+.|.++++.+.+.- |....-...-.+.+...|++++|.+.|++..... .+.....+-.+++++.-..+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~y-P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY-PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 456788888888888643 3333334445566777899999999998766421 112344566778888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCH-------HHHHHHHHHHH
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTL-LRGFVQNNKK-------SKVVVLLHKMA 566 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~-------~~a~~~~~~~~ 566 (603)
...|..+.+.+ ..+..+|..+ +.++...|+. ++|.+++++..
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 99999999875 4555555444 3445677877 88888888775
No 248
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.52 E-value=0.0074 Score=36.87 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
++..++.+|.+.|++++|.++++++++..+. ++..+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHHhh
Confidence 4455556666666666666666666655443 455444443
No 249
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.50 E-value=0.096 Score=41.23 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHH
Q 037409 78 SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG--LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFN 155 (603)
Q Consensus 78 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (603)
..+...+..-+....+.|++++|.+.|+.+...- -+-...+-..++-++.+.++++.|...+++.++..+......|-
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3344455555666777888888888888877652 02233455667777888888888888888888876654444455
Q ss_pred HHHHHHHh
Q 037409 156 FLINGLCA 163 (603)
Q Consensus 156 ~l~~~~~~ 163 (603)
..+.+++.
T Consensus 87 ~Y~~gL~~ 94 (142)
T PF13512_consen 87 YYMRGLSY 94 (142)
T ss_pred HHHHHHHH
Confidence 55555443
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.41 E-value=0.38 Score=46.19 Aligned_cols=61 Identities=23% Similarity=0.254 Sum_probs=34.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPI-PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..+..++.+.|+.++|.+.++++.+..+. .+......|+.++...+.+.++..++.+..+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 44555555666666666666666553222 12334555666666666666666666665443
No 251
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.40 E-value=0.15 Score=46.46 Aligned_cols=229 Identities=10% Similarity=0.032 Sum_probs=137.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---cchHHHHHHHHHh
Q 037409 304 NCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK--GCRHD---VYSYNILINANCK 376 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 376 (603)
+....+.++++..+...+.+- ......++..+..+.++.|.+++++..--..+.. ..... ...|..+..++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887766541 1112345667778888888877766543222211 00111 1233444444544
Q ss_pred cCChHHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-----CCCCHHhHHHHHHHHHhC
Q 037409 377 DQKVEDAVCLYREMLSE-RIRP---SVITYNTLLSGLFQVGNLGDALKLIDKMQLND-----VVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~ 447 (603)
..++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.- ......++..+...+.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 45555555544433332 2222 11233456677788889999999999875421 112345677888889999
Q ss_pred CCHHHHHHHHHHHHH----cCCCCChH-----HHHHHHHHHHhCCChhHHHHHHHHHhhC----CCCC-CHhHHHHHHHH
Q 037409 448 GFVLEAVQVFQAIRN----CKCELRIE-----TYNCLINGLCKMGRLKTACKLFHRLQHK----GPIP-DVVTCSTMIHW 513 (603)
Q Consensus 448 g~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~ 513 (603)
.++++|.-+..+..+ .++..-.. +..-+.-++...|++-.|.+..++..+. |-.+ .......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999888776553 23222122 2233445677888888888888876653 3221 23345667788
Q ss_pred HHHcCChhHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~ 532 (603)
|...|+.+.|..-|+++..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999988887654
No 252
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.36 E-value=0.08 Score=46.51 Aligned_cols=97 Identities=23% Similarity=0.188 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMI 511 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 511 (603)
.|+..+.. .+.|++..|...|...++... .-.+..+-+|+.++...|++++|..+|..+.+.-++- -+..+--++
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444333 355666666666666665321 1124455566666666666666666666666542221 134455556
Q ss_pred HHHHHcCChhHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+..+.|+.++|...|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666666666666666666665
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.26 E-value=0.2 Score=41.44 Aligned_cols=91 Identities=8% Similarity=0.001 Sum_probs=41.8
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
..+..+|++++|+.-++.....-..-+ ..+--.|.......|.+++|+..++.....+ -.......-+.++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHcCc
Confidence 344555555555555555443211101 1111223344555555555555555544322 122223344555555555
Q ss_pred HHHHHHHHHHHHHCC
Q 037409 555 KSKVVVLLHKMAAEK 569 (603)
Q Consensus 555 ~~~a~~~~~~~~~~~ 569 (603)
.++|+.-|++.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 555555555555543
No 254
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.67 Score=39.94 Aligned_cols=208 Identities=10% Similarity=0.079 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 037409 83 SFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC 162 (603)
Q Consensus 83 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (603)
.|..-..+|-...++++|...+..+.+.. ..+... +.....++.|..+.+++.+. .--+..++.-...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrsl-------fhAAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSL-------FHAAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccH-------HHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34444556667778888888777776321 112111 22233445555555555543 112335566666777
Q ss_pred hcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC--ccCCChhhHHHHHHHHHhcCCh
Q 037409 163 AEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA--ICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 163 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
.+|.++.|-..+++.-+. ...-++++|+++|++....... ..+.-...+....+.+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 888877777777665431 1234555566666555433100 0011122334444556666666
Q ss_pred hHHHHHHHHHhhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHH
Q 037409 241 DKAKELLLQMKDR-----NINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG---VQPDVVTFNAMINYNCKDGKMDK 312 (603)
Q Consensus 241 ~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~ 312 (603)
++|-..+.+-... ....-...|...|-.|....|+..|...++..-+.+ -+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665544332211 011111234455555666677777777777644332 122344555666655 3456665
Q ss_pred HHHHH
Q 037409 313 VNRLL 317 (603)
Q Consensus 313 a~~~~ 317 (603)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55544
No 255
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.22 E-value=0.38 Score=36.90 Aligned_cols=68 Identities=10% Similarity=0.153 Sum_probs=48.0
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+....+..+..+..+|+-+.-.+++..+.+.+ .+++..+..++.+|.+.|+..++.++++++.+.|+.
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33445666777888888888888888887654 788888889999999999999999999999888865
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.19 E-value=0.27 Score=39.73 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=68.1
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHH--HH
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSP-GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF-VLNLL--IN 124 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~ 124 (603)
.|+.+.-....+..++|+.-|......+-.. .+-..........+.|+...|...|++.-.....|-.. ....| .-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3555554456677777777777765544321 12223334445667777777777777776543222221 11111 11
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 037409 125 CLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNV 179 (603)
Q Consensus 125 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 179 (603)
.+...|.|++.....+.+...+-+.....-..|.-+-.+.|++.+|.++|..+..
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445566665555555544433333333444555555566666666666666543
No 257
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.17 E-value=0.88 Score=40.57 Aligned_cols=225 Identities=18% Similarity=0.083 Sum_probs=151.4
Q ss_pred cCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVNP-DTVTYNSLMDGFCLVGRISRARELFVSMVSK-GCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
.+....+...+.......... ...........+...++...+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355666666666666553321 2456667777788888888888888887752 22334455666667777788888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHhhCCC--CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 385 CLYREMLSERIRPSVITYNTLLS-GLFQVGNLGDALKLIDKMQLNDV--VPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887754333 222223333 67888999999999988855322 1233344444444667788899998888888
Q ss_pred HcCCCC-ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 462 NCKCEL-RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 462 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
... +. ....+..+...+...++++.|...+.......+. ....+..+...+...+..+++...+.+.....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 754 33 4677888888888888889999988888875332 24455555555556677888888888888753
No 258
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.14 E-value=0.42 Score=36.67 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
....+..+...|.-+.-.+++.++.+.+ ++++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344445555555555555555555422 45555555556666666666666666555555543
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.10 E-value=0.023 Score=34.67 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
|..+...|...|++++|+++|+++++.. |.|...+..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 4444555555555555555555555543 3334444333
No 260
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.06 E-value=4.2 Score=47.33 Aligned_cols=319 Identities=9% Similarity=0.035 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 264 SLICGFCCVDDWKEAKCLFIEMMDNGV--QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL 341 (603)
Q Consensus 264 ~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
.+..+-.+++.+.+|.-.++.-..... .-....+..+...|...+++|....+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 455566788899999999888411110 11223344444589999999988877764111 22233 33445778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCCHHHHHH
Q 037409 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL-LSGLFQVGNLGDALK 420 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~ 420 (603)
.|++..|...|+.+.+.+ ++....++.++......|.++..+...+-.... ..+....++.+ +.+--+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 334667887887777888888888766655443 22233333332 333356677776666
Q ss_pred HHHHHhhCCCCCCHHhHHH--HHHHHHhC--CCHHHHHHHHHHHHH--------cCCC-CChHHHHHHHHHHHhCCChhH
Q 037409 421 LIDKMQLNDVVPDSFTFAT--YIDGLCKN--GFVLEAVQVFQAIRN--------CKCE-LRIETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~a~~~~~~~~~--------~~~~-~~~~~~~~l~~~~~~~g~~~~ 487 (603)
... .. +..+|.. ++....+. .+.-.-.+..+.+.+ .... .-...|..++..+.-..- +.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-EN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HH
Confidence 554 11 1111111 22222221 111111112222221 1111 111334444443332211 11
Q ss_pred HHHHHHHHhh-CCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH-HHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 488 ACKLFHRLQH-KGPIPDVVTCSTMIHWLCKEGQMDKANDLLLD-MEAKNCV-----PSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 488 A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
-.+.+..... ....-+..-|..-+.--....+..+-+--+++ +...... .-..+|...++.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111110 00111112222222211111122222222222 2222112 235678888998889999999988
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 561 LLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+-++.+.+ -++++...++.++..|+-..|+.++++.+
T Consensus 1692 all~A~e~r----~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1692 ALLNAKESR----LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHhhhhcc----cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 887777655 34677788899999999999999988765
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.01 E-value=1.2 Score=40.83 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhCCCHH---HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVL---EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
++..++.++...+..+ +|..+++.+.+. .+..+.++..-+..+.+.++.+.+.+.+.+|...-.. ....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHH
Confidence 4555666666665543 445555555432 2334555555566666677888888888888775221 2233444444
Q ss_pred HH---HHcCChhHHHHHHHHHHHCCCCCCHH-HHHH--HHHHH--HhcCC------HHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 513 WL---CKEGQMDKANDLLLDMEAKNCVPSEV-TFCT--LLRGF--VQNNK------KSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 513 ~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~--l~~~~--~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
.+ ... ....|...+..++...+.|... .... +...+ ...++ .+....++....+....+.+..+.
T Consensus 164 ~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 164 HIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 43 332 3345666665555443344433 1111 11111 12111 333333444322221111233322
Q ss_pred HHH-------HHHHHcCCcHHHHHHHHH
Q 037409 579 SKV-------VDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 579 ~~l-------~~~~~~~g~~~eA~~~~~ 599 (603)
..+ +....++++|++|.++|+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 222 344567899999999988
No 262
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.96 E-value=0.011 Score=33.52 Aligned_cols=32 Identities=13% Similarity=0.446 Sum_probs=27.2
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 037409 69 FDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVV 101 (603)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 101 (603)
|+++++.+|. +..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 6677887776 8899999999999999999886
No 263
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.94 E-value=2.4 Score=43.63 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=45.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCCHHHHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA----AEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~ 584 (603)
-++..+.+..+.+.++.+.+..-+ .++..|..++..+.+.+..+.-.++..+.+ ....- |- ..++++
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~----~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~i-pp----l~VL~~ 780 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGK----EDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERI-PP----LHVLQI 780 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCc----cChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccC-CH----HHHHHH
Confidence 345566677777777777666543 477888888888888886655444444443 33333 22 335666
Q ss_pred HHcCCc
Q 037409 585 LSKDKK 590 (603)
Q Consensus 585 ~~~~g~ 590 (603)
+.+.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 776654
No 264
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.93 E-value=0.0087 Score=33.96 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=21.0
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 562 LHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
++++++.+|. ++..|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~--n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN--NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC--CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555543 6777777777777777777765
No 265
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.79 E-value=0.11 Score=42.87 Aligned_cols=96 Identities=15% Similarity=0.035 Sum_probs=75.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPD----VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
=..-+.+.|++++|..-|..+++.-+... ...|..-+.++.+.+.++.|+.-..++++.+ +.....+..-+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 35567788999999999999998643322 3346666677889999999999999999976 445566666678899
Q ss_pred hcCCHHHHHHHHHHHHHCCCC
Q 037409 551 QNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..++++|++-|+++++..+.
T Consensus 180 k~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999986654
No 266
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.71 E-value=0.47 Score=46.38 Aligned_cols=158 Identities=15% Similarity=0.080 Sum_probs=81.2
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
...-.++++++.++.+.-.-. ..-...-.+.++..+.+.|..+.|+++-.+-..+ .+...+.|+
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll----~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~ 333 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLL----PNIPKDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGN 333 (443)
T ss_dssp HHHHTT-HHH-----HHHHTG----GG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-
T ss_pred HHHHcCChhhhhhhhhhhhhc----ccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCC
Confidence 334456666665555411100 0011333566667777777777777665443222 344456677
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
++.|.++.++ ..+...|..|.....+.|+++-|.+.|.+... +..|+-.|...|+.+.-.++.+.
T Consensus 334 L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 334 LDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHH
Confidence 7777665433 23566777777777777777777777665431 34455556667776666666665
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYRE 389 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 389 (603)
....| -++....++...|+.++..+++.+
T Consensus 399 a~~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 399 AEERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 55543 144444555556666666666544
No 267
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.69 E-value=0.28 Score=47.96 Aligned_cols=97 Identities=16% Similarity=0.156 Sum_probs=41.9
Q ss_pred HhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChh
Q 037409 162 CAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVD 241 (603)
Q Consensus 162 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 241 (603)
.+.|+.+.|.++.++. .+...|..|.....+.|+++-|.+.|++... +..|+-.|...|+.+
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------------~~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD------------FSGLLLLYSSTGDRE 390 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------------ccccHHHHHHhCCHH
Confidence 3455555554443332 2344555555555555555555555554322 233444444555554
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 282 (603)
.-.++.+....+| -++....++.-.|+.++..+++
T Consensus 391 ~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 391 KLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHH
Confidence 4444444444332 1333333344445544444444
No 268
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.60 E-value=0.27 Score=38.40 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=56.4
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
..++..++.++++.|+.+....+.+..-. +..+... ..+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 44566666666777776666666655442 1111100 0000 01112345777778888888
Q ss_pred HHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAK-NCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 550 (603)
|+..|++..|+++++...+. +++.+...|..|+.-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 88888888888887777654 55556777777665443
No 269
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.55 E-value=0.49 Score=36.95 Aligned_cols=97 Identities=12% Similarity=0.056 Sum_probs=58.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
|..++..++.++++.|+.+....+++..=. +.++... ..+. --......|+..++.+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 456788999999999999999999876532 2111100 0000 1112244566666667777
Q ss_pred HHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIHWL 514 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~ 514 (603)
+|+..|++..|.++++...+. +++.+...|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 776667777777776666653 4444455666665543
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.51 E-value=1.1 Score=36.47 Aligned_cols=124 Identities=15% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCC
Q 037409 91 LAKNKQYDTVVSLFKRLNSNGLFPDLF-VLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTV---TFNFLINGLCAEGR 166 (603)
Q Consensus 91 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 166 (603)
+.+.+..++|+..|..+.+.|...-+. ............|+...|...|.++-+....|-.. .-..-.-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 345666677777777666655332221 22233445566666666666666666553333222 01111123445666
Q ss_pred HhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 167 IMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
+++.....+.+...+-+.....-..|.-+-.+.|++..|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666666655444333444445555566666666666666666655
No 271
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.40 E-value=2.6 Score=40.27 Aligned_cols=122 Identities=8% Similarity=0.003 Sum_probs=61.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHH
Q 037409 91 LAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEA 170 (603)
Q Consensus 91 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 170 (603)
-...|+...|-+-....++.. +.++.........+...|+++.+.+.+..+.+. ......+...+++.....|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 344566555544444433331 223333333334455667777777666554433 122334455566666666777777
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 171 ARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
..+-+-|....++ +...........-..|-++++.-.++++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 7766666554333 2222222222223345566676666666654
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.37 E-value=0.9 Score=43.77 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
..+...-++.-++..+ +.|+..+...++ +--......++.+++++..+.+-. .+.+....+..-..
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~-----------~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA-----------SLGKSQFLQHHGHF 246 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH-----------hhchhhhhhcccch
Confidence 3444444555555544 234433222222 223455688999999888765411 01111000111111
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
++.....+..|-..+-..+..++.+.|+.++|++.++++.+.. +. +..+...|+.++...+.+.++..++.+..+..
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 2222222222333444567888889999999999999998764 33 34567899999999999999999999986544
Q ss_pred C
Q 037409 570 L 570 (603)
Q Consensus 570 ~ 570 (603)
.
T Consensus 326 l 326 (539)
T PF04184_consen 326 L 326 (539)
T ss_pred C
Confidence 4
No 273
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.34 E-value=5.1 Score=43.20 Aligned_cols=104 Identities=13% Similarity=0.177 Sum_probs=53.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHh--HHHHHHHHHHHcCCh
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVV--TCSTMIHWLCKEGQM 520 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~ 520 (603)
.+...+.+++|.-.|+..-+ ..--+.+|..+|+|.+|..+..++... -+.. +-..|+.-+..+++.
T Consensus 948 hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 948 HLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccc
Confidence 33445556666555544321 122345566666666666666655431 1211 124555566667777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
-+|-+++.+.... |. .. +..|++...|++|..+.....
T Consensus 1016 ~eAa~il~e~~sd---~~-~a----v~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1016 YEAAKILLEYLSD---PE-EA----VALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred hhHHHHHHHHhcC---HH-HH----HHHHhhHhHHHHHHHHHHhcc
Confidence 7776666666532 21 11 223445556666666555443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.28 E-value=2.3 Score=39.00 Aligned_cols=18 Identities=11% Similarity=0.038 Sum_probs=10.8
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 037409 339 FCLVGRISRARELFVSMV 356 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~ 356 (603)
+.+.++++.|.+.|+-..
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445666666666666443
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.21 E-value=1.3 Score=35.91 Aligned_cols=53 Identities=17% Similarity=0.004 Sum_probs=28.7
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
...++.+.+..++..+.-.. |.....-..-...+...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665443 223333333344455666666666666666554
No 276
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.17 E-value=5.8 Score=42.84 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcC--ChhHHHHHHHHHhh
Q 037409 226 TYNSIIDGLCKDG--FVDKAKELLLQMKD 252 (603)
Q Consensus 226 ~~~~l~~~~~~~g--~~~~a~~~~~~~~~ 252 (603)
....++.+|.+.+ .++.++....+...
T Consensus 792 ~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 792 FNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred hhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3445666777666 56666666555553
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.14 E-value=0.033 Score=32.11 Aligned_cols=24 Identities=4% Similarity=0.274 Sum_probs=15.6
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 578 SSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 578 ~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+..++.+|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456677777777777777777664
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.06 E-value=1.4 Score=35.57 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=36.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG 111 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 111 (603)
..++.+++..+++-+.-..|. ....-..-...+.++|++.+|+.+|+++....
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 456788888888877766555 33333444556677888888888888876553
No 279
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.91 E-value=0.79 Score=38.16 Aligned_cols=93 Identities=16% Similarity=0.049 Sum_probs=74.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCEL----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
..-+...|++++|..-|..++..-.+. ....|..-..++.+.+.++.|+.-..+.++.++. ....+..-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 455778999999999999998754222 2345666677888999999999999999998765 45555666778999
Q ss_pred cCChhHHHHHHHHHHHCC
Q 037409 517 EGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~ 534 (603)
..++++|++-|+++++..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 999999999999999964
No 280
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.84 E-value=2.2 Score=36.26 Aligned_cols=181 Identities=17% Similarity=0.079 Sum_probs=99.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPS-VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQ 455 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 455 (603)
.|-+.-|.--|.+.+.. .|+ +..||.+.--+...|+++.|.+.|+...+.++.-+-...+.-+. +.--|+++-|.+
T Consensus 78 lGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 34444444445554443 233 46677777777888888888888888877655444333333332 334578888877
Q ss_pred HHHHHHHcCCCCCh--HHHHHHHHHHHhCCChhHHHHHH-HHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 456 VFQAIRNCKCELRI--ETYNCLINGLCKMGRLKTACKLF-HRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 456 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
-+...-..+ +.|+ ..|..+.. ..-++.+|..-+ ++... .|..-|...+-.+.- |+.. ...+++++..
T Consensus 155 d~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a 224 (297)
T COG4785 155 DLLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMERLKA 224 (297)
T ss_pred HHHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHh
Confidence 766665543 3232 22222221 223555665443 33433 244455544433322 2221 1233344433
Q ss_pred CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 533 KNCVPS-------EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 533 ~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
-. ..+ ..+|..|+.-+...|+.++|..+++-++..++-
T Consensus 225 ~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 225 DA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred hc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 21 111 346778888888999999999999988865543
No 281
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.83 E-value=4.1 Score=39.41 Aligned_cols=96 Identities=9% Similarity=0.068 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH--HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC--KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
..-+.+++.+.+.|-.++|...+..+... |+|+...|..++..-. ..-+..-+..+++.|... +-.|+..|.....
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLWMDYMK 538 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence 33456677777778888888888888776 4557777776665422 122366677777777754 1266677766666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~ 567 (603)
--...|..+.+-.++.++.+
T Consensus 539 ~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhccCCCcccccHHHHHHHH
Confidence 55677777777777666653
No 282
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.83 E-value=1.7 Score=34.95 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 037409 299 AMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ 378 (603)
Q Consensus 299 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 378 (603)
.++..+.+.+.......+++.+...+. .+....+.++..|++.+. ....+.+.. . .+.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 344444555555666666666555542 345555666666554422 222233321 1 12333344555555555
Q ss_pred ChHHHHHHHHHH
Q 037409 379 KVEDAVCLYREM 390 (603)
Q Consensus 379 ~~~~A~~~~~~~ 390 (603)
.++++..++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555543
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.78 E-value=0.39 Score=43.07 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTFC 543 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 543 (603)
..++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 345667777788888888888888888887766 777888888888888888888888887765 47777776665
Q ss_pred HHHHH
Q 037409 544 TLLRG 548 (603)
Q Consensus 544 ~l~~~ 548 (603)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55544
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.64 E-value=2.9 Score=36.78 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=10.7
Q ss_pred HHHHHhCCChhHHHHHHHHHhhC
Q 037409 476 INGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
.+.|.+.|.+..|..-++++++.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc
Confidence 33444444444444444444443
No 285
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.46 E-value=4.8 Score=38.58 Aligned_cols=65 Identities=12% Similarity=0.021 Sum_probs=47.8
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL---RIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
...++..++..+.+.|.++.|...+..+...+... .+.+....+......|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777888888888888888888877643221 445555667777788888888888888777
No 286
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.96 E-value=0.88 Score=40.89 Aligned_cols=79 Identities=11% Similarity=0.168 Sum_probs=67.4
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCCHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA-----EKLVVSDLSLS 578 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 578 (603)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+. |.+.+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~-P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID-PAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC-ccHHHH
Confidence 3467788889999999999999999999986 67899999999999999999999999999875 5777 777766
Q ss_pred HHHHHH
Q 037409 579 SKVVDL 584 (603)
Q Consensus 579 ~~l~~~ 584 (603)
.....+
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 555554
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.88 E-value=0.15 Score=29.33 Aligned_cols=22 Identities=18% Similarity=0.160 Sum_probs=10.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
..|+..|.+.|++++|++++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
No 288
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.88 E-value=2.8 Score=33.67 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=21.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
.++..+...+.......+++.+...+ ..+....+.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444555555555555555544 23444555555555543
No 289
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.54 E-value=3.9 Score=34.24 Aligned_cols=86 Identities=16% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
.+...|++++|+..++..+......+ ..+-..|++.....|.+++|...+......+. .+.....-++++...|+
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w---~~~~~elrGDill~kg~ 174 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW---AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH---HHHHHHHhhhHHHHcCc
Confidence 34455555555555555554210001 11112344455555555555555555544332 22233444555555555
Q ss_pred HHHHHHHHHhh
Q 037409 591 YRECLNQFRHL 601 (603)
Q Consensus 591 ~~eA~~~~~~~ 601 (603)
.++|+.-|++-
T Consensus 175 k~~Ar~ay~kA 185 (207)
T COG2976 175 KQEARAAYEKA 185 (207)
T ss_pred hHHHHHHHHHH
Confidence 55555555543
No 290
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.49 E-value=6.2 Score=36.41 Aligned_cols=87 Identities=10% Similarity=0.166 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--cC----ChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC--
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCR--TR----NTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF-- 239 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 239 (603)
++...+++.+.+.|+..+..+|.+....... .. ....|..+|+.|.+.......++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445677777777777776555443222222 22 234677777777776544444444555544433 2222
Q ss_pred --hhHHHHHHHHHhhCCCC
Q 037409 240 --VDKAKELLLQMKDRNIN 256 (603)
Q Consensus 240 --~~~a~~~~~~~~~~~~~ 256 (603)
.+.++.+|+.+.+.|+.
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~ 175 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFK 175 (297)
T ss_pred HHHHHHHHHHHHHHHhCCC
Confidence 23445555555554443
No 291
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.46 E-value=11 Score=39.20 Aligned_cols=16 Identities=19% Similarity=0.407 Sum_probs=10.2
Q ss_pred HcCCcHHHHHHHHHhh
Q 037409 586 SKDKKYRECLNQFRHL 601 (603)
Q Consensus 586 ~~~g~~~eA~~~~~~~ 601 (603)
...|++++|++.++++
T Consensus 516 ~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 516 YHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHTT-HHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 4567777777777665
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.38 E-value=0.25 Score=27.79 Aligned_cols=28 Identities=11% Similarity=0.119 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.+..++.++...|++++|++.++++++.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555555555555555555555543
No 293
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.36 E-value=0.15 Score=28.69 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..+..++.++...|++++|++.+++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3568889999999999999999999865
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.32 E-value=0.19 Score=45.26 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=83.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.-++-|.++|.+++|+..+.+.....+. |++++..-..+|.+..++..|+.-...++..+ ..-...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3466789999999999999998886443 88889889999999999999998888888764 333445666666667788
Q ss_pred CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 554 KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
+..+|.+-++..+...+. +.+ |-..+.+.....|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~--~~E----LkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK--NIE----LKKSLARINSLRERK 215 (536)
T ss_pred hHHHHHHhHHHHHhhCcc--cHH----HHHHHHHhcchHhhh
Confidence 888888888888875543 333 333444444444443
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.30 E-value=0.27 Score=27.74 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+|..++.+|...|++++|+..++++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344445555555555555555555544
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.21 E-value=1.5 Score=36.91 Aligned_cols=97 Identities=14% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHH--HH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP-SEVTF--CT 544 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~--~~ 544 (603)
..+..++..|.+.|+.+.|.+.+.++.+....+. ...+-.++......+++..+...+.++...--.. |...- ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4566778888888888888888888877544433 3345667777778888888888877766541111 12111 11
Q ss_pred --HHHHHHhcCCHHHHHHHHHHHH
Q 037409 545 --LLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 545 --l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
-+-.+...|++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 1223456788888887776654
No 297
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.14 E-value=1.1 Score=39.46 Aligned_cols=104 Identities=18% Similarity=0.152 Sum_probs=62.3
Q ss_pred CHHhHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHH
Q 037409 433 DSFTFATYIDGLCK-----NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTC 507 (603)
Q Consensus 433 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 507 (603)
|..+|...+..+.. .+.++=....++.|.+.|+.-|..+|+.|++.+-+.. ..|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 55566666555533 2344444455566666777777777777766553321 11111 11
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 508 STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 508 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
....--|- .+-+-++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 11111121 22345789999999999999999999999999766653
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.86 E-value=6 Score=34.46 Aligned_cols=49 Identities=14% Similarity=0.021 Sum_probs=21.1
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHhCCCHHHHHHH
Q 037409 407 SGLFQVGNLGDALKLIDKMQLN---DVVPDSFTFATYIDGLCKNGFVLEAVQV 456 (603)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 456 (603)
-.+....++..|...++.--+. .-..+..+...|+.+| ..|+.+++..+
T Consensus 198 lv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 198 LVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3344444555555555542211 1112334444555544 34555554444
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.83 E-value=0.71 Score=41.84 Aligned_cols=96 Identities=13% Similarity=-0.085 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG 518 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 518 (603)
.-..-|.++|.+++|+..|...+... +.++..+..-..+|.+..++..|+.-...++..+-. -...|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHh
Confidence 34567889999999999999887654 558889999999999999999999888888764211 2344555555555677
Q ss_pred ChhHHHHHHHHHHHCCCCCC
Q 037409 519 QMDKANDLLLDMEAKNCVPS 538 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~ 538 (603)
+..+|.+-++..++. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 888888888888875 465
No 300
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.78 E-value=2.2 Score=42.16 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=84.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLC 480 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 480 (603)
..+.++..+..+|-.++|+++ .+|+..- .....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 445566666666766666654 2232221 22334678888887775543 25567888888888
Q ss_pred hCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
+.+++..|.+.|.+... |..|+-.+...|+.+....+-....+.| ..| ....+|...|++++..+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHH
Confidence 88888888888877764 4556666667777766666666666655 222 23346778888888877
Q ss_pred HHHHH
Q 037409 561 LLHKM 565 (603)
Q Consensus 561 ~~~~~ 565 (603)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 76554
No 301
>PRK09687 putative lyase; Provisional
Probab=92.73 E-value=7.9 Score=35.51 Aligned_cols=233 Identities=14% Similarity=0.117 Sum_probs=140.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHCCCCCCHhhH
Q 037409 79 PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITS----GAFVVLGRILRSCFTPNTVTF 154 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~a~~~~~~~~~~~~~~~~~~~ 154 (603)
++.......+.++...|. +++......+.. .+|+..-...+.++...|+.+ ++...+..+... +++..+.
T Consensus 35 ~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 355666667777777764 444444455543 346666666777777777643 466666666443 3456666
Q ss_pred HHHHHHHHhcCCH-----hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHH
Q 037409 155 NFLINGLCAEGRI-----MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNS 229 (603)
Q Consensus 155 ~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 229 (603)
...+.++...+.. ..+...+..... +++..+-...+.++.+.++ ++++..+-.+.+. +|...-..
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d------~~~~VR~~ 178 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD------PNGDVRNW 178 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC------CCHHHHHH
Confidence 6666666655422 233344433332 4566666677777777776 5677777777653 34445555
Q ss_pred HHHHHHhcC-ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 230 IIDGLCKDG-FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308 (603)
Q Consensus 230 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (603)
.+.++.+.+ ....+...+..+.. .++..+-...+.++.+.++ ..|+..+-+..+.+ + .....+.+....|
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig 249 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELG 249 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcC
Confidence 555555543 23456666655553 3466777777888888887 46666666666543 2 2345667777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGF 339 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 339 (603)
+. ++...+..+.+. .+|..+....+.++
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 75 677778777764 33666555555554
No 302
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=92.63 E-value=1.3 Score=39.13 Aligned_cols=33 Identities=27% Similarity=0.260 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 312 KVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 312 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
=++.++++|...|+.||..+-..+++++.+.+-
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 456778888888888888887788887766654
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.46 E-value=0.25 Score=27.86 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 576 SLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 576 ~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..|..++.+|...|++++|+..+++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 578899999999999999999999875
No 304
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.44 E-value=9.7 Score=35.85 Aligned_cols=115 Identities=13% Similarity=-0.010 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ---NNKKSKVVVLL 562 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~ 562 (603)
+.-+.+++++++.++. +...+..++..+.+..+.++..+-+++++..+ +-+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 3445555555555443 45555555555555555555566666666553 3345555554444322 22344555544
Q ss_pred HHHHHC------CC---CCCC-------HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 563 HKMAAE------KL---VVSD-------LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 563 ~~~~~~------~~---~~~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.++. +. ..+. ..++..+...+.++|..+.|+..++-++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~l 181 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALL 181 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHH
Confidence 444321 10 0001 1234455556677899999988888765
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.39 E-value=6.7 Score=33.91 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=9.6
Q ss_pred HHhcCCHHHHHHHHHHH
Q 037409 339 FCLVGRISRARELFVSM 355 (603)
Q Consensus 339 ~~~~~~~~~a~~~~~~~ 355 (603)
+.-.+.+++|-++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 33445666666666554
No 306
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.15 E-value=17 Score=37.99 Aligned_cols=191 Identities=10% Similarity=-0.046 Sum_probs=95.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CCC-------HHhHHHHHHHHHhCCCHHHHHHHHH--------HHHHcCCCCChHHHH
Q 037409 410 FQVGNLGDALKLIDKMQLNDV-VPD-------SFTFATYIDGLCKNGFVLEAVQVFQ--------AIRNCKCELRIETYN 473 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 473 (603)
.-.+++..|...++.+..... .|+ +..+....-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999998865311 111 2222222333456799999999998 333333333333332
Q ss_pred H--HHHHHHhCC--ChhH--HHHHHHHHhhC---CCCCCHhHHHHHH-HHHHHc--CChhHHHHHHHHHHHCC---CCCC
Q 037409 474 C--LINGLCKMG--RLKT--ACKLFHRLQHK---GPIPDVVTCSTMI-HWLCKE--GQMDKANDLLLDMEAKN---CVPS 538 (603)
Q Consensus 474 ~--l~~~~~~~g--~~~~--A~~~~~~~~~~---~~~p~~~~~~~l~-~~~~~~--g~~~~A~~~~~~~~~~~---~~~~ 538 (603)
. ++..+...+ ..++ +..+++.+... .+..+..++..++ .++... -...++...+.+.++.- ...+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 222233223 2333 67777766552 1222333444443 333221 12235555554443221 1111
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CCHHHH-----HHHHHHHHcCCcHHHHHHHHHhh
Q 037409 539 ---EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVV--SDLSLS-----SKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 539 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~-----~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
..++..+...+. .|+..+..+......+...+. .....| ..+.+.|...|+.++|.....+.
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 122333444444 788877666665544322220 133344 23445577889999998877653
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.04 E-value=2.6 Score=35.44 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH--HH
Q 037409 505 VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE--VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS--SK 580 (603)
Q Consensus 505 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 580 (603)
..+..++..|.+.|+.++|.+.+.++.+....+.. ..+..+++.....|++..+...+.++...--...+.+.. ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788999999999999999999999987544443 356788999999999999999998886432111122211 11
Q ss_pred --HHHHHHcCCcHHHHHHHHHhhc
Q 037409 581 --VVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 581 --l~~~~~~~g~~~eA~~~~~~~l 602 (603)
-+-.+...|++.+|-+.|-..+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2223456789999988876554
No 308
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=92.03 E-value=3.7 Score=33.90 Aligned_cols=28 Identities=14% Similarity=0.182 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 520 MDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 520 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
+++|...|+++.+. .|+...|..-+...
T Consensus 96 F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 96 FEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 34455555555553 46666666555444
No 309
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=92.02 E-value=12 Score=35.90 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP---DSFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
...+|..+...+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678888899999999999999999987644221 2334444556667789999999999888873
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.94 E-value=0.28 Score=25.68 Aligned_cols=23 Identities=13% Similarity=0.026 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHH
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
....++.++...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556777777777777777665
No 311
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.92 E-value=1.7 Score=35.84 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN-----------KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
++|+.-|++++..+ |....++..++.+|...+ .+++|...|+++.+.. |+.+.|..-.....
T Consensus 52 edAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~---P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 52 EDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED---PNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHH
Confidence 34444445555543 223456666666665433 2456666666666544 56666666554443
No 312
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.90 E-value=17 Score=37.40 Aligned_cols=113 Identities=11% Similarity=-0.011 Sum_probs=54.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCCcchHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHhc
Q 037409 97 YDTVVSLFKRLNSNGLFPDLFVLNLLINC-----LCKMGITSGAFVVLGRILR-------SCFTPNTVTFNFLINGLCAE 164 (603)
Q Consensus 97 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 164 (603)
...|.++++...+.| +......++.+ +....|.+.|..+++.+.+ .+ .......+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 356777777776665 22332222222 2344566667777766655 33 223444455555443
Q ss_pred C-----CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHHhc
Q 037409 165 G-----RIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 165 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~ 216 (603)
. +.+.|..++.+....| .|+.......+..... ..+...|.++|......+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 2 4455666666665554 2332222211111111 134456666666666544
No 313
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.71 E-value=18 Score=37.25 Aligned_cols=180 Identities=11% Similarity=0.010 Sum_probs=113.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----HhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHh
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTML-----AKNKQYDTVVSLFKRLNS-------NGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 128 (603)
+..+|.++|+..-..+ ++..-..++..+ ....+.+.|+.+|+.+.+ .| .+.....+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678999999887654 344444444433 345699999999999977 55 44466778888877
Q ss_pred cC-----CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH----h
Q 037409 129 MG-----ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA-EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC----R 198 (603)
Q Consensus 129 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 198 (603)
.. +.+.|..++.+....|.. +.......+..... ..+...|.++|......| . ..+...+...|. .
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~--~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-H--ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-C--hHHHHHHHHHHHhCCCc
Confidence 54 556699999999988743 44433333222222 246789999999998887 2 233333332222 2
Q ss_pred cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 037409 199 TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
..+...|..++.+..+.+ .+....-...+..+.. ++++.+.-.+..+.+.|.
T Consensus 377 ~r~~~~A~~~~k~aA~~g----~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG----NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCCHHHHHHHHHHHHHcc----ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 447889999999998875 1111111122233333 777777777777766653
No 314
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.68 E-value=19 Score=37.61 Aligned_cols=189 Identities=18% Similarity=0.185 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHH-hCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCc
Q 037409 62 SNEAVYFFDCMI-KMKPSPG--MTSFTILLTMLA-KNKQYDTVVSLFKRLNSNGLFPDLF-----VLNLLINCLCKMGIT 132 (603)
Q Consensus 62 ~~~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~ 132 (603)
...|++.++-+. +..++|. +.++..++..+. ...+++.|...+++....--.++-. ....++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 345666676666 3333333 445566677665 5677888888888775432222211 122345555555544
Q ss_pred chHHHHHHHHHHCCCC----CCHhhHHHH-HHHHHhcCCHhHHHHHHHHHHhcC---CCCcHHHHHHHHHHHH--hcCCh
Q 037409 133 SGAFVVLGRILRSCFT----PNTVTFNFL-INGLCAEGRIMEAARLFKKLNVFA---CDPNVVTFNTLINGLC--RTRNT 202 (603)
Q Consensus 133 ~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~ 202 (603)
. |...+++.++.--. +-...+..+ +..+...+++..|.+.++.+.... .+|...++..++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4 77777776654222 122233333 222223368888888887765432 2444445555544443 34556
Q ss_pred HHHHHHHHHHHHhcC------CccCCChhhHHHHHHHH--HhcCChhHHHHHHHHHh
Q 037409 203 LVALKLFEEMVNEFG------AICKPDVVTYNSIIDGL--CKDGFVDKAKELLLQMK 251 (603)
Q Consensus 203 ~~A~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~ 251 (603)
+.+++.++.+..... ....|-..+|..+++.+ ...|+++.+...++++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666633211 01233445555555544 34666666666555543
No 315
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.60 E-value=12 Score=35.20 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH---cCChhHHHHHH
Q 037409 451 LEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK---EGQMDKANDLL 527 (603)
Q Consensus 451 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 527 (603)
+.-+.+++++++.+ +.+......++..+.+..+.++..+.++++....+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 34455666666553 456666666666666666666666777777665444 55666665554433 22445555555
Q ss_pred HHHHHC------CC------CCC--H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 528 LDMEAK------NC------VPS--E---VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 528 ~~~~~~------~~------~~~--~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+.++. +. .++ . .++..+...+.+.|..+.|..+++.+++.++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 544422 10 001 1 12233344456778888888888888776653
No 316
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.02 E-value=5.9 Score=31.59 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=38.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG 111 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 111 (603)
..++++++..+++-+.-..|. ....-..-...+...|++++|+++|++..+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 367888888888888776665 33333334456778899999999999988764
No 317
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.86 E-value=24 Score=37.24 Aligned_cols=222 Identities=18% Similarity=0.126 Sum_probs=117.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCcc-------hHHHHH-HHHHhcCChHHHHHHHHHHHhC----CCCCCHhhHHHHHH
Q 037409 340 CLVGRISRARELFVSMVSKGCRHDVY-------SYNILI-NANCKDQKVEDAVCLYREMLSE----RIRPSVITYNTLLS 407 (603)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~ 407 (603)
....++++|..++.++...-..|+.. .++.+- ......|+++.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45678888888888876642222221 223322 2234578888888888776654 22334556677777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHH--HHHHhCCCH--HHHHHHHHHHHHc---CCC---CChHHHHH
Q 037409 408 GLFQVGNLGDALKLIDKMQLNDVVPDSFT---FATYI--DGLCKNGFV--LEAVQVFQAIRNC---KCE---LRIETYNC 474 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~--~~~~~~g~~--~~a~~~~~~~~~~---~~~---~~~~~~~~ 474 (603)
+..-.|++++|..+.++..+..-.-+... +..+. ..+...|.. .+....+...... ..+ +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 78888999999988877654311222222 22222 234556632 2333333333221 001 11233444
Q ss_pred HHHHHHhCCChhHHHHHHHHH----hhCCCCCCHhHH--HHHHHHHHHcCChhHHHHHHHHHHHCCCCC----CHHHHHH
Q 037409 475 LINGLCKMGRLKTACKLFHRL----QHKGPIPDVVTC--STMIHWLCKEGQMDKANDLLLDMEAKNCVP----SEVTFCT 544 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~----~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~ 544 (603)
+..++.+ ++.+..-...- ....+.|-.... ..|+......|+.++|...+.++......+ +..+-..
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4455544 33333322222 222223222222 266777888899999998888887653222 2222222
Q ss_pred HHH--HHHhcCCHHHHHHHHHH
Q 037409 545 LLR--GFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 545 l~~--~~~~~g~~~~a~~~~~~ 564 (603)
.+. .....|+.+++.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 222 33567888877777666
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=22 Score=36.77 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=39.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 231 IDGLCKDGFVDKAKELLLQMKDRNINP---NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKD 307 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 307 (603)
++.+.+.+.+++|+++.+..... .| ....+...+..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455556666666655543322 22 2334555566666666666666666665532 444555555555554
Q ss_pred CCHH
Q 037409 308 GKMD 311 (603)
Q Consensus 308 ~~~~ 311 (603)
++..
T Consensus 437 ~~l~ 440 (846)
T KOG2066|consen 437 DQLT 440 (846)
T ss_pred cccc
Confidence 4443
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.62 E-value=0.45 Score=28.28 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
++..++..|...|++++|.+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 4455556666666666666655554
No 320
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.54 E-value=0.33 Score=26.97 Aligned_cols=26 Identities=19% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+..++.++.+.|++++|.+.+++++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34566777777777777777777664
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.47 E-value=8.3 Score=32.69 Aligned_cols=73 Identities=10% Similarity=-0.074 Sum_probs=49.4
Q ss_pred chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC---CCCcHHHHHHHHHHHHhcCChHHHH
Q 037409 133 SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA---CDPNVVTFNTLINGLCRTRNTLVAL 206 (603)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~ 206 (603)
+.|+..|-++...+.-.++.....|+..|. ..+.+++++++-+..+.. -.+|+..+.+|+..+.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 556666666666654446666666666655 567778888777766532 2466777888888888888887763
No 322
>PRK09687 putative lyase; Provisional
Probab=90.23 E-value=15 Score=33.77 Aligned_cols=122 Identities=9% Similarity=-0.039 Sum_probs=67.3
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-ChhHHHHHHHHHhhCCCCCCHhHHHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-RLKTACKLFHRLQHKGPIPDVVTCSTMI 511 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 511 (603)
+..+-...+.++.+.++ +++...+-.+.+ .++..+-...+.++.+.+ +.+.+...+..+.. .+|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444555666666555 345555555554 334445555555555443 23455555555553 24555556666
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.++.+.|+ ..|+..+-+.++.+ + .....+.++.+.|+. +|+..+.++.+.
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 66666666 45666665555532 2 234566666677764 577777777653
No 323
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.10 E-value=7 Score=35.40 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 037409 379 KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQ 426 (603)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (603)
++++++.++..-++.|+-||..+++.+++.+.+.+++.+|..+.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444555555555555555565556666666655555555555554443
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.09 E-value=4.6 Score=34.17 Aligned_cols=76 Identities=14% Similarity=-0.026 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHH
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAK 244 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 244 (603)
++|.+.|-++...+.--++.....|. .|....+.++++.++..+++.......+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 45566666665544222333333333 33335566666666666666544333555666666666666666666553
No 325
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.05 E-value=7.4 Score=37.61 Aligned_cols=307 Identities=11% Similarity=-0.034 Sum_probs=0.0
Q ss_pred cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH-------------HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 237 DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW-------------KEAKCLFIEMMDNGVQPDVVTFNAMINY 303 (603)
Q Consensus 237 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (603)
.+.++...+.+..+..+|.......++.-...|.+.|.. ..+...-+.+-..........+....-+
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~yn~aVi 109 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDYNFAVI 109 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhhhhhee
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 037409 304 NCKDGKMDKVNRLLELMIQR----GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK--GCRHDVYSYNILINANCKD 377 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 377 (603)
|.....+..|+++....... .-..-..+.......+....+.++|+.++..+.+. ........-+.-.....+.
T Consensus 110 ~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt 189 (696)
T KOG2471|consen 110 FYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKT 189 (696)
T ss_pred eeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhccc
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVF 457 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 457 (603)
+....|..-+.... +....-..-+..|.+..+...+..-.+......-. ++.....--+.+.-.|++.+|.+++
T Consensus 190 ~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~-s~~~l~LKsq~eY~~gn~~kA~KlL 263 (696)
T KOG2471|consen 190 LSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQD-SSMALLLKSQLEYAHGNHPKAMKLL 263 (696)
T ss_pred CCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCC-CcHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHcCCCC--------ChHHHHHHHHHHHhCCChhHHHHHHHHHhh-------CCCCC----------CHhHHHHHHH
Q 037409 458 QAIRNCKCEL--------RIETYNCLINGLCKMGRLKTACKLFHRLQH-------KGPIP----------DVVTCSTMIH 512 (603)
Q Consensus 458 ~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p----------~~~~~~~l~~ 512 (603)
...--...+- ....+|.+...+.+.|.+..+..+|.++++ .|.+| .-.+.-..+-
T Consensus 264 ~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~ 343 (696)
T KOG2471|consen 264 LVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGL 343 (696)
T ss_pred HhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhH
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.|...|+.-.|.+.|.+.... +..++..|..++.+|.
T Consensus 344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
No 326
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=89.91 E-value=2 Score=37.36 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..+...++.+..+.|++++|.++|.+++
T Consensus 165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 165 ATLLYLIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666677777777777776654
No 327
>PRK10941 hypothetical protein; Provisional
Probab=89.91 E-value=5.1 Score=36.23 Aligned_cols=79 Identities=10% Similarity=-0.084 Sum_probs=55.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
.+.+-.+|.+.++++.|++..+.++... |.++.-+.--+-.|.+.|.+..|..-++..++..+..|+.......+..+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3455566778888888888888888764 455666666777788888888888888888877776566665555554443
No 328
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.89 E-value=10 Score=31.33 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 037409 404 TLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~ 424 (603)
.++..+...|++-+|+++.+.
T Consensus 94 ~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 333444444454444444444
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.64 E-value=9.2 Score=30.56 Aligned_cols=51 Identities=16% Similarity=0.041 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
.++++++..++..+.-.. |.....-..-...+...|++++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555544332 212222222233344455555555555555543
No 330
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.49 E-value=0.7 Score=25.92 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
++..++.+|...|++++|.+.|++.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556666666667777776666654
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=89.33 E-value=0.7 Score=25.60 Aligned_cols=28 Identities=7% Similarity=0.203 Sum_probs=18.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+..++.++.+.|++++|.+.++++++.-
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 4455666666777777777777766543
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.80 E-value=1.2 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+++.++..|...|++++|..++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444555555555555555554443
No 333
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.46 E-value=27 Score=34.33 Aligned_cols=165 Identities=15% Similarity=0.039 Sum_probs=82.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
|....-.++..+.....+.-...+..+++..| .+...+..++++|... ..+.-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666543 2455566666666665 445556666666554433 3333334444
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHHHH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELR-----IETYNCLINGLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~ 516 (603)
.|.+ ++.+.+...|.++...-++-. .+.|.-+...- ..+.+....+..++... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 666666666666554332211 12333333211 23445555555554442 222223333444444555
Q ss_pred cCChhHHHHHHHHHHHCC
Q 037409 517 EGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~ 534 (603)
..++++|++++..+++.+
T Consensus 218 ~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 218 NENWTEAIRILKHILEHD 235 (711)
T ss_pred ccCHHHHHHHHHHHhhhc
Confidence 556666666666655543
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.37 E-value=3.4 Score=40.74 Aligned_cols=103 Identities=19% Similarity=0.086 Sum_probs=62.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAAR 172 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 172 (603)
..|+...|...+..+......-.......+.+.+.+.|-...|-.++.+.+... ....-++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 467777777777776654311122234455666667777777777776666654 2244556667777777777778877
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHH
Q 037409 173 LFKKLNVFACDPNVVTFNTLINGLC 197 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (603)
.|++..+.. +.+.+.-+.|...-|
T Consensus 698 ~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcC-CCChhhHHHHHHHHH
Confidence 777766553 334444555554444
No 335
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=88.09 E-value=13 Score=32.47 Aligned_cols=118 Identities=10% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH-hHHHHHHHHHHHcCChhH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDV-VTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 522 (603)
|.....+..|...|.+.+..+ |..+.-|..-+.++.+..+++.+..--.+.++. .||. .....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~n-P~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICIN-PTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhcC-CCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccH
Confidence 444556777777666665433 223345566666777777777777777766664 3443 334455566667777777
Q ss_pred HHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 523 ANDLLLDMEAK----NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 523 A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
|+..++++.+. .+++...+...|..+--..=...+..++.++
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77777777433 2333444555554443333233444444433
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.99 E-value=6.8 Score=38.93 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=13.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQM 250 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 250 (603)
..-|..|.++..+.|++..|.+.|...
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 334555555555555555555555443
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.73 E-value=9.6 Score=34.58 Aligned_cols=100 Identities=14% Similarity=0.181 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchH
Q 037409 291 QPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG---VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSY 367 (603)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (603)
+....+...++..-....+++.+..++-.+.... ..++. +-.+.++.+ -.-++++++.++..-+.-|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344444444444444455555555555444321 01111 111222222 222445666666555566666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 368 NILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
+.+++.+.+.+++.+|.++...|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666555544
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=87.63 E-value=12 Score=29.32 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=31.0
Q ss_pred CHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 503 DVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+..+--.+.+++.+.. +..+.+.++++..+.. +| .......|+-++.+.|+++++.++++.+++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3444444555555443 2334445555555422 22 12233444445555555555555555555443
No 339
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.57 E-value=39 Score=35.18 Aligned_cols=75 Identities=16% Similarity=0.035 Sum_probs=39.4
Q ss_pred HHHHhcCCcchHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCCh
Q 037409 124 NCLCKMGITSGAFVVLGRILRSCFT-PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNT 202 (603)
Q Consensus 124 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (603)
..+.+.+.+++|+.+.+.....-.. .-..++..++..+...|++++|-...-.|.. -+..-|..-+..+...++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 3455556666666655443322110 0233555566666666777777666666652 2445555555555555443
No 340
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=87.46 E-value=40 Score=35.22 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc
Q 037409 156 FLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT 199 (603)
Q Consensus 156 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (603)
.++-.+.|+|++++|.++..+.... .......+...+..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3666788999999999998555432 234445566666777654
No 341
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.32 E-value=31 Score=33.87 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=51.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMD 337 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
|.....+++..+.++..+.-...+..+|+.-| .+...+..++.+|... ..++-..+++++.+.... |...-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 45555566666666666666666666666543 3455566666666655 445555566655555332 2332333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 037409 338 GFCLVGRISRARELFVSMVSK 358 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~ 358 (603)
.| ..++.+.+...|.++...
T Consensus 141 ~y-Ekik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KY-EKIKKSKAAEFFGKALYR 160 (711)
T ss_pred HH-HHhchhhHHHHHHHHHHH
Confidence 33 335556666666655543
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.99 E-value=2 Score=23.93 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 540 VTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.+|..++..|...|++++|.+.+++.++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677788888888888888888887764
No 343
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.90 E-value=5.9 Score=28.73 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
++.+-++.+...+..|++......+.+|.+.+++..|.++++.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555556666666666666666666666666666555
No 344
>PRK11619 lytic murein transglycosylase; Provisional
Probab=86.74 E-value=44 Score=35.01 Aligned_cols=147 Identities=12% Similarity=0.001 Sum_probs=81.8
Q ss_pred HHHhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037409 47 IAKFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL 126 (603)
Q Consensus 47 ~~~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (603)
-..|..+.-....|+...+..+-.++- ..|-..-..|..+...+ ....+++...++++.. +.+.....-...+..+
T Consensus 34 r~~f~~A~~a~~~g~~~~~~~~~~~l~-d~pL~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~--~~P~~~~Lr~~~l~~L 109 (644)
T PRK11619 34 RQRYQQIKQAWDNRQMDVVEQLMPTLK-DYPLYPYLEYRQLTQDL-MNQPAVQVTNFIRANP--TLPPARSLQSRFVNEL 109 (644)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcc-CCCcHhHHHHHHHHhcc-ccCCHHHHHHHHHHCC--CCchHHHHHHHHHHHH
Confidence 345777777778899998888877652 22322222333332221 1224554444444432 1122233333445556
Q ss_pred HhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH
Q 037409 127 CKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTL 203 (603)
Q Consensus 127 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (603)
.+.+++......+ .. .+.+.........+....|+.++|......+-..| .........++..+.+.|...
T Consensus 110 a~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 110 ARREDWRGLLAFS----PE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHccCHHHHHHhc----CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCC
Confidence 6666666555422 11 23466666777778888888888877777765544 445566777777777665543
No 345
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=17 Score=31.75 Aligned_cols=119 Identities=9% Similarity=-0.078 Sum_probs=72.8
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhH
Q 037409 409 LFQVGNLGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 487 (603)
|.....++.|+..+.+.+.. .|... -|+.-+..+.+..+++.+..--.+.++.. +..+.....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccccH
Confidence 55666788888877776654 45553 34455566677888888877776666543 3334455566677778888999
Q ss_pred HHHHHHHHhhC----CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 037409 488 ACKLFHRLQHK----GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530 (603)
Q Consensus 488 A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 530 (603)
|+..+.+.... .+.|-...+..|..+=-+.=...+..++.++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 99999887542 23334445555554433222334444444443
No 346
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.60 E-value=17 Score=30.04 Aligned_cols=29 Identities=14% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHhH
Q 037409 141 RILRSCFTPNTVTFNFLINGLCAEGRIME 169 (603)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 169 (603)
.+.+.+..++...+..+++.+.+.|++..
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344445555555555555555554433
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=86.51 E-value=11 Score=33.63 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+....|-.|.+.++...+.++-..-+
T Consensus 120 IleLCILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.06 E-value=3.7 Score=40.44 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=76.0
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
.-.|+...|...+..+....+.-..+....|...+.+.|-..+|-.++.+.+... ...+.++..+++++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 3468888888888887765444444556677778888888888888888888775 566778888899999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHH
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVD 583 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~ 583 (603)
+.++++.+..++ ++++-..|..
T Consensus 697 ~~~~~a~~~~~~--~~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTK--CPECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCC--ChhhHHHHHH
Confidence 999998887665 5554444443
No 349
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=86.04 E-value=7.9 Score=28.46 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
+..+-++.+...+..|++......+.+|.+.+++..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555566667777777777777777777777777766653
No 350
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.00 E-value=6.5 Score=33.58 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPSEVTFCTLLRG 548 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 548 (603)
+.+..+..+.+.+.+.+++...+.-++.+|. |..+-..++..++-.|+|++|..-++-.-... ..+....|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455567778889999999999988887666 77788889999999999999998888776642 12234456666544
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.48 E-value=54 Score=34.82 Aligned_cols=231 Identities=13% Similarity=0.001 Sum_probs=121.2
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHH-------HHHHHH-HHHHhcCChHHHHHHHHHHHHhcC-CccCCChhhHHH
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVV-------TFNTLI-NGLCRTRNTLVALKLFEEMVNEFG-AICKPDVVTYNS 229 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 229 (603)
.......++++|..++.++...-..|+.. .|+.+- ......|++++|.++.+.....-. ....+....+..
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv 502 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV 502 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence 34456789999999998876532222221 344432 333457899999999988877531 112234556677
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHH-----HHHHhcCCHH--HHHHHHHHHHHCC---CC---CCHHH
Q 037409 230 IIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLI-----CGFCCVDDWK--EAKCLFIEMMDNG---VQ---PDVVT 296 (603)
Q Consensus 230 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~--~A~~~~~~~~~~~---~~---~~~~~ 296 (603)
+..+..-.|++++|..+..+..+..-.-++..+..+. ..+...|+.. +.+..|....... .+ +-..+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~ 582 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI 582 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence 7788888999999998887765542222333333222 3344556332 2223333222210 01 12233
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----cchHHH
Q 037409 297 FNAMINYNCKD-GKMDKVNRLLELMIQRGVNPDTVTY--NSLMDGFCLVGRISRARELFVSMVSKGCRHD----VYSYNI 369 (603)
Q Consensus 297 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 369 (603)
...++.++.+. +...++..-++.-......|-.... ..|+......|+.+.|...++++......++ ..+...
T Consensus 583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 44444455441 1222222222222222222222222 3667777889999999998888876533322 112222
Q ss_pred HHHH--HHhcCChHHHHHHHHH
Q 037409 370 LINA--NCKDQKVEDAVCLYRE 389 (603)
Q Consensus 370 l~~~--~~~~~~~~~A~~~~~~ 389 (603)
.+.. ....|+.+.+.....+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 2222 3346777777666654
No 352
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.40 E-value=8.1 Score=28.07 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 169 EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
++.+-++.+....+-|++....+.++++.+.+++..|+++|+.+...
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44445555555555666666666666666666666666666666543
No 353
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=85.20 E-value=6.5 Score=35.96 Aligned_cols=98 Identities=13% Similarity=-0.003 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhC---CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHK---GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
...|--=++-|.+..++..|...|.+-++. ++..+...|+.-..+-...|++..|+.-...++... +.....+..=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 345555566677777777888877776653 233345667766666667777777777777777653 3344556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.++.....+.+|..+.+....
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 6677777777777777776653
No 354
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.18 E-value=27 Score=31.05 Aligned_cols=208 Identities=12% Similarity=0.073 Sum_probs=118.3
Q ss_pred CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC-
Q 037409 289 GVQPDVVTFNAMINY-NCKDGKMDKVNRLLELMIQRGVNPDT---VTYNSLMDGFCLVGRISRARELFVSMVSK---GC- 360 (603)
Q Consensus 289 ~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 360 (603)
+..||+..-|..-.. -.+..+.++|+.-|...++....... .....++..+.+.+++++..+.+.+++.- .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 345665544432221 12344788899999888876433222 34456677888899999988888887642 11
Q ss_pred -CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C
Q 037409 361 -RHDVYSYNILINANCKDQKVEDAVCLYREMLSE-----RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLND----V 430 (603)
Q Consensus 361 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~ 430 (603)
..+..+.|.++..-....+.+-....++.-+.. +-..-..+-+.+...|...+.+.+..++++++...- -
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 224456677776666566665555555443221 111111233556677778888888888888875431 1
Q ss_pred CCC-------HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChHHHHHHH----HHHHhCCChhHHHHHHHHHh
Q 037409 431 VPD-------SFTFATYIDGLCKNGFVLEAVQVFQAIRNCK-CELRIETYNCLI----NGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 431 ~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 496 (603)
..| ...|..-++.|....+-..-..+|++..... --|.+.+...+- ....+.|++++|..-|-++-
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 111 2345555666777777777777777665321 134444433322 23456677877765444433
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.16 E-value=1.3 Score=26.86 Aligned_cols=23 Identities=0% Similarity=0.021 Sum_probs=13.2
Q ss_pred HHHHHHHcCCcHHHHHHHHHhhc
Q 037409 580 KVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 580 ~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++.+|...|+.+.|+++++.++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 35556666666666666655543
No 356
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.93 E-value=12 Score=27.13 Aligned_cols=55 Identities=7% Similarity=0.020 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
|.|......++..+...|++++|.+.+-.+++......+...-..++.++...|.
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4455555666666666666666666666666544332233444445555544443
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.83 E-value=28 Score=30.95 Aligned_cols=210 Identities=13% Similarity=0.104 Sum_probs=124.9
Q ss_pred HCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCcchH---HHHHHHHHhcCChHHHHHHHHHHHhC----
Q 037409 322 QRGVNPDTVTYNSLMDG-FCLVGRISRARELFVSMVSKGCRHDVYSY---NILINANCKDQKVEDAVCLYREMLSE---- 393 (603)
Q Consensus 322 ~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~---- 393 (603)
+.+..||...-+..-.+ -.+..++++|+.-|+++++.........| ..++..+.+.+++++....+.+++..
T Consensus 19 ds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSA 98 (440)
T KOG1464|consen 19 DSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSA 98 (440)
T ss_pred ccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 34456666554433221 12345788999999998886433333433 44567788899999998888887642
Q ss_pred -CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh----hC-CCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Q 037409 394 -RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQ----LN-DVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC-- 465 (603)
Q Consensus 394 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-- 465 (603)
...-+..+.+.+++..+...+.+--.+.++.-. .. +-..-..|-..+...|...|.+.+-.++++++...--
T Consensus 99 VTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 99 VTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred HhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 112244566777776666666665555554322 11 1111112344567777778888888888887764211
Q ss_pred --CCC-------hHHHHHHHHHHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHH----HHHHcCChhHHHHHHHHHH
Q 037409 466 --ELR-------IETYNCLINGLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIH----WLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 466 --~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~ 531 (603)
..| .++|..-+..|....+-.+-..++++.+.. ..-|.+.+...+-. ...+.|++++|-.-|-++.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 112 345666677788888888888888877652 23345554443322 2456788888876544443
No 358
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.11 E-value=8.9 Score=32.81 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=59.2
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CCHhHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PDVVTCSTMIHW 513 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~ 513 (603)
|....+..+.+.+.+.+++...++-.+.+ |.+...-..++..++-.|++++|..-++-.-+..+. +-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34556677888899999999998877766 667778888999999999999999888877764333 235566666655
No 359
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.67 E-value=1.4 Score=40.17 Aligned_cols=119 Identities=12% Similarity=-0.039 Sum_probs=78.8
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAN 524 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 524 (603)
...|.++.|++.|...+..+ ++....|..-..++.+.+....|++-++...+.++. ...-|-.-..+....|+|++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHH
Confidence 35677888888888777765 666677777777788888888888888888776544 3444555555666778888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
..+..+.+.++.+.... .+-...-..+..++-...+++..+
T Consensus 203 ~dl~~a~kld~dE~~~a--~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSA--TLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHhccccHHHHH--HHHHhccchhhhhhchhHHHHHHH
Confidence 88888888765444333 333344445555555555555543
No 360
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.55 E-value=22 Score=32.13 Aligned_cols=60 Identities=12% Similarity=0.038 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+++.....|..+|.+.+|.++.++.+..+ +.+...+..|++.+...|+--.+.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 45566677888999999999999998876 6788888889999999999888888887775
No 361
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.49 E-value=48 Score=32.61 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH-CCCCCCCHH
Q 037409 501 IPDVVTC-STMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF--VQNNKKSKVVVLLHKMAA-EKLVVSDLS 576 (603)
Q Consensus 501 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 576 (603)
.|+..++ +.+...+.+.|-..+|...+..+.... +|+...|..++..- ..+-+...+.++|+.|+. .| . ++.
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~--d~~ 531 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-A--DSD 531 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-C--ChH
Confidence 3455555 567777888899999999999999874 67777777766542 222337788899999874 45 3 777
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.|......-...|+.+.+-.++-+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHH
Confidence 776666555577776655554443
No 362
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.12 E-value=1.9 Score=39.35 Aligned_cols=87 Identities=11% Similarity=-0.014 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.|.++.|++.+...+... ++....|..-..++.+.+.+..|++-+......+ +....-|-.-..+..-.|++++|...
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHHHHH
Confidence 344555555554444432 1233333333344444445555544444444332 11222222222333334555555555
Q ss_pred HHHHhhCCC
Q 037409 492 FHRLQHKGP 500 (603)
Q Consensus 492 ~~~~~~~~~ 500 (603)
|....+.+.
T Consensus 205 l~~a~kld~ 213 (377)
T KOG1308|consen 205 LALACKLDY 213 (377)
T ss_pred HHHHHhccc
Confidence 555554443
No 363
>PRK11619 lytic murein transglycosylase; Provisional
Probab=82.68 E-value=67 Score=33.73 Aligned_cols=119 Identities=11% Similarity=0.034 Sum_probs=73.8
Q ss_pred hcCChHHHHHHHHHHHhCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHH
Q 037409 376 KDQKVEDAVCLYREMLSER-IRPSV--ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLE 452 (603)
Q Consensus 376 ~~~~~~~A~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (603)
...+.+.|..++....... ..+.. ..+..+.......+..+++...++...... .+......-+......++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 3556788999998775442 22121 223344333333333566777766654332 233344444555568899998
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 453 AVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 453 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
+...+..|.... .....-.-.+.+++...|+.++|...|+.+..
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888875422 33455666788888889999999999998754
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.37 E-value=17 Score=28.55 Aligned_cols=66 Identities=15% Similarity=0.095 Sum_probs=52.0
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAA-EKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.++..+-..+++++.++.+. .+.+.+++...+ ..+. ...+....|+-.+.+.|+++.++++++.+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~-~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPE-RRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcc-cchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 57778888899999887655 667889999886 3333 456667778888999999999999998765
No 365
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=81.60 E-value=18 Score=26.30 Aligned_cols=64 Identities=13% Similarity=0.127 Sum_probs=39.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCc
Q 037409 68 FFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFP-DLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 132 (603)
-++..+..+|. |......+...+...|++++|++.+-.+++.+... +...-..++..+...|.-
T Consensus 10 al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 10 ALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 34445555555 77888888888899999999999888888764222 334445555555555543
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.35 E-value=36 Score=29.71 Aligned_cols=68 Identities=9% Similarity=0.050 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHHHcCChh-------HHHHHHHHHHHCCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 504 VVTCSTMIHWLCKEGQMD-------KANDLLLDMEAKNCVP----S-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~-------~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
...+-.++|.|...|+.+ .|.+.|.+..+..-.| + ......++....+.|++++|.+++.+++..+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 344556677777777744 3555555555442121 2 345567788889999999999999999865443
No 367
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.76 E-value=0.82 Score=36.95 Aligned_cols=86 Identities=12% Similarity=0.082 Sum_probs=59.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.... +. ...++..|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD-----LDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC-----HHHHHHHHHhcc
Confidence 35566677788888888888888766555677888888888888877887777772211 12 235566777788
Q ss_pred CHHHHHHHHHHHH
Q 037409 554 KKSKVVVLLHKMA 566 (603)
Q Consensus 554 ~~~~a~~~~~~~~ 566 (603)
.++++.-++.++-
T Consensus 85 l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 85 LYEEAVYLYSKLG 97 (143)
T ss_dssp SHHHHHHHHHCCT
T ss_pred hHHHHHHHHHHcc
Confidence 8888877776643
No 368
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.56 E-value=1.4e+02 Score=36.01 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=87.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 037409 191 TLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC 270 (603)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (603)
.+..+-.+.+.+..|+..++.-.... .........+..+...|...++++...-+...... +...+. -|....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e-k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE-KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHH
Confidence 33445556778888888888741110 00011223344455588888888887777664221 222232 344455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHhcCCHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYN-SLMDGFCLVGRISRAR 349 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~ 349 (603)
..|++..|...|+.+.+.+ ++....++.++......|.++...-..+...... .+....++ .-+.+--+.++++..+
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7788888889998888774 3346667777777667777777766555554432 22222222 2233335566666666
Q ss_pred HHHH
Q 037409 350 ELFV 353 (603)
Q Consensus 350 ~~~~ 353 (603)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5554
No 369
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.25 E-value=50 Score=30.63 Aligned_cols=21 Identities=10% Similarity=0.214 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCCCCChhhHH
Q 037409 243 AKELLLQMKDRNINPNVITYN 263 (603)
Q Consensus 243 a~~~~~~~~~~~~~~~~~~~~ 263 (603)
...+++.+.+.|+.-+..+|.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~l 101 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYL 101 (297)
T ss_pred HHHHHHHHHHhccCccChHHH
Confidence 344555555555554444443
No 370
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.01 E-value=64 Score=34.80 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037409 401 TYNTLLSGLFQVGNLGDALKLIDKMQLN 428 (603)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (603)
-|..|+..|...|+.++|+++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 3888899999999999999999888753
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.32 E-value=4.5 Score=24.52 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
.|+.+|...|+.+.|.+++++.+..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57888999999999999999988643
No 372
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=78.31 E-value=30 Score=26.98 Aligned_cols=45 Identities=9% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 556 SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 556 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++..++|+.|...++-...+..|...+..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 346677888887777645667777888888888888888888763
No 373
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=78.06 E-value=25 Score=30.80 Aligned_cols=102 Identities=12% Similarity=0.048 Sum_probs=74.0
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhC------CCCCC-----------HhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHK------GPIPD-----------VVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+.+...-.+-+.+.|++.+|..-+.+++.. .-+|- ...+..+..++...|++-++++.-.+.+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 445555667778899999999988876421 11232 2234455566777889999999999988
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 532 AKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 532 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
... +.+...|..-+.+....=+.++|..-+.+.++..+.
T Consensus 258 ~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 258 RHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 875 667888888888887777888999989888876543
No 374
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=77.61 E-value=6 Score=27.48 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=26.1
Q ss_pred HcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 516 KEGQMDKANDLLLDMEAKNCVPS--EVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
..++.++|+..|+.+++.-..+. -.++-.++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777776666521211 123445556666666666665544
No 375
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.30 E-value=26 Score=27.46 Aligned_cols=44 Identities=5% Similarity=0.083 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.+.++|+.|...++....+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 78888888887777656777888888888888888888888765
No 376
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.17 E-value=27 Score=25.84 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 169 EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
+..+-++.+....+-|++....+.+.++.+.+++..|+++|+.+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555566666666677777777777777777777777777777665
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.88 E-value=3.1 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
.+..++.++...|++++|...+++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455666666666666666666554
No 378
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.84 E-value=51 Score=28.86 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=14.2
Q ss_pred HHHhcCChhHHHHHHHHHhhCCC
Q 037409 233 GLCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 233 ~~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
.-...+++.+|.++|+++.....
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456667777777777665433
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.69 E-value=4.9 Score=38.72 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=64.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
+......+.++.|..++.++++.. +.....|..-..++.+.+++..|..-+.++++..+. ....|-.-+.++.+.+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 344455677777888777777654 334444444446777777777777777777775433 344454555566666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.+|...|+..... .|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 7777777777663 46555444444333
No 380
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.43 E-value=6 Score=20.90 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+..++..+...|++++|...+++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444555555555555555555543
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.30 E-value=28 Score=25.61 Aligned_cols=51 Identities=14% Similarity=0.072 Sum_probs=24.0
Q ss_pred HHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 125 CLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 125 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
.+...|+|++|..+.+.. +.||...|.+|-.. +.|-.+++..-+.++...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 444555555555544433 24455555444332 4444444444444444443
No 382
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.06 E-value=1.7 Score=35.09 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=25.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLG 140 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 140 (603)
+..+.+.+.+.....+++.+...+...++...+.++..|++.+..+.....++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444455555555555555544333344455555555555544444444443
No 383
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.48 E-value=38 Score=30.46 Aligned_cols=87 Identities=8% Similarity=-0.076 Sum_probs=42.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-----
Q 037409 123 INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC----- 197 (603)
Q Consensus 123 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 197 (603)
|++++..+++.++....-+....-.+....+...-|-.|.+.|.+..+.++-.......-..+...|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 455555666655555444333322222334444455556666666666666555544211122223444443333
Q ss_pred hcCChHHHHHHH
Q 037409 198 RTRNTLVALKLF 209 (603)
Q Consensus 198 ~~g~~~~A~~~~ 209 (603)
-.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 356666666555
No 384
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=75.39 E-value=10 Score=24.13 Aligned_cols=25 Identities=12% Similarity=-0.013 Sum_probs=11.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.++-++.+.|++++|.+..+.+++.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444445555555555555555543
No 385
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.04 E-value=66 Score=28.77 Aligned_cols=175 Identities=6% Similarity=-0.076 Sum_probs=104.2
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh-
Q 037409 409 LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK-NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK- 486 (603)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~- 486 (603)
+.+....+.|+.+....+..++. +-..+..--..+.. ..++.+-++.+.++.... +.+-.+|.--=......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpA-nYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPA-NYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCccc
Confidence 45566777888888877764322 22222211111111 234666777777777655 445555543333334456666
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCH-----HHHHH
Q 037409 487 TACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ-NNKK-----SKVVV 560 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~-----~~a~~ 560 (603)
.-+++.+.|...+-+ |-..|..--+++..-+.++.=+.+..++++.++ -+..+|+.-.-.... .|-. +.-+.
T Consensus 131 rELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDI-RNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh-hccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 667778888876555 777888888888888889999999999988764 344445432211112 2222 33344
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHc-CC
Q 037409 561 LLHKMAAEKLVVSDLSLSSKVVDLLSK-DK 589 (603)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g 589 (603)
+..+++..-+ .+...++.|...+.. .|
T Consensus 209 yt~~~I~~vP--~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 209 YTKDKILLVP--NNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHHhCC--CCccHHHHHHHHHHhccC
Confidence 5555555433 588889888888875 55
No 386
>PRK10941 hypothetical protein; Provisional
Probab=73.74 E-value=60 Score=29.55 Aligned_cols=61 Identities=13% Similarity=-0.029 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.+.+-.+|.+.++++.|.++.+.+....|. ++.-+.--+..|.+.|.+..|..-++..++.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 345556677778888888888888776555 5656666677777888888888777777665
No 387
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.71 E-value=1.4e+02 Score=32.41 Aligned_cols=40 Identities=3% Similarity=0.105 Sum_probs=27.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK 236 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 236 (603)
-.++.....+-++.+++.+.... ..++....+.++..|++
T Consensus 599 l~~l~~~~~~l~I~YLE~li~~~---~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 599 LNYLKSKEPKLLIPYLEHLISDN---RLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHHhhhhCcchhHHHHHHHhHhc---cccchHHHHHHHHHHHH
Confidence 34566777888888888888765 34455666667766654
No 388
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.66 E-value=76 Score=28.89 Aligned_cols=60 Identities=13% Similarity=0.095 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+++.....|..+|.+.+|..+.++.+..++- +...|-.++..+...|+--.+...++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3445556677777777777777777776544 66667777777777777666766666654
No 389
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=72.45 E-value=94 Score=29.88 Aligned_cols=43 Identities=12% Similarity=0.181 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLN 108 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 108 (603)
|++.-+.++.+ .|- .+.++..+..++.++|+.+.|.++.++++
T Consensus 25 Dp~~l~~ll~~----~Py-HidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 25 DPNALINLLQK----NPY-HIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CHHHHHHHHHH----CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55544444432 243 78888999999999999999999998875
No 390
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.03 E-value=25 Score=25.85 Aligned_cols=82 Identities=24% Similarity=0.229 Sum_probs=49.9
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
+....++|.-+-++.-..+.. ...+--.-+..+..+|+|++|..+.+... .||...+..+. -.+.|--+.+..
T Consensus 17 G~HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc--e~rlGl~s~l~~ 89 (115)
T TIGR02508 17 GHHCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALC--EWRLGLGSALES 89 (115)
T ss_pred cchHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHH--HHhhccHHHHHH
Confidence 344567888777776443211 22222233445778899999988776663 67777766554 345666666666
Q ss_pred HHHHHHHCC
Q 037409 138 VLGRILRSC 146 (603)
Q Consensus 138 ~~~~~~~~~ 146 (603)
.+.++...|
T Consensus 90 rl~rla~sg 98 (115)
T TIGR02508 90 RLNRLAASG 98 (115)
T ss_pred HHHHHHhCC
Confidence 666666664
No 391
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.44 E-value=1.4e+02 Score=31.31 Aligned_cols=179 Identities=11% Similarity=0.118 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhc---------CC-
Q 037409 64 EAVYFFDCMIKMKPSPGMT-SFTILLTMLAKNKQYDTVVSLFKRLN-SNGLFPDLFVLNLLINCLCKM---------GI- 131 (603)
Q Consensus 64 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---------g~- 131 (603)
+.+...+.+.+.+..|+-. +--.+-.+|...|++++|+.+--.+- ...+.++...+..++.-|... +.
T Consensus 41 d~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~ 120 (929)
T KOG2062|consen 41 DSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNP 120 (929)
T ss_pred hhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCc
Confidence 3444444444433333222 22344567888899999988765553 223455555555555444322 10
Q ss_pred ------cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHH-HHhcCCCCcHHHHHHHHHHHHhcCC-hH
Q 037409 132 ------TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKK-LNVFACDPNVVTFNTLINGLCRTRN-TL 203 (603)
Q Consensus 132 ------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~-~~ 203 (603)
-++-..++++|+..... ..-|..++.......+ ..++++ +.+. ..+....+.++..+....+ .+
T Consensus 121 ~~~~~iD~rL~~iv~rmi~kcl~--d~e~~~aiGia~E~~r----ld~ie~Ail~~--d~~~~~~~yll~l~~s~v~~~e 192 (929)
T KOG2062|consen 121 EQKSPIDQRLRDIVERMIQKCLD--DNEYKQAIGIAFETRR----LDIIEEAILKS--DSVIGNLTYLLELLISLVNNRE 192 (929)
T ss_pred cccCCCCHHHHHHHHHHHHHhhh--hhHHHHHHhHHhhhhh----HHHHHHHhccc--cccchHHHHHHHHHHHHHhhHH
Confidence 12233444444443221 1111112211111111 222333 1111 1122233444444443332 33
Q ss_pred HHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 204 VALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
--.+++..+.+.......|| |..+..+|.-..+.+.+.++++.+.+.
T Consensus 193 fR~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 193 FRNKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 34455555555443334444 445777788888888888888888874
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.58 E-value=90 Score=28.87 Aligned_cols=116 Identities=12% Similarity=-0.006 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC----C---ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----c
Q 037409 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKM----G---RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----E 517 (603)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 517 (603)
+..+|...|+.+.+.|..+.......+...|..- + +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5566666666665555322222233333333322 1 2235677777766654 33344444444432 2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCCC
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN---------------KKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~~~~ 571 (603)
.+.++|...|.+..+.|. ......+. .+...| +...|...+......+..
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 366777777777777662 33444444 444444 667777777777766654
No 393
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=70.30 E-value=11 Score=20.26 Aligned_cols=29 Identities=7% Similarity=0.051 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLT 89 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 89 (603)
|+.+.|..+|++++...| .+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~-~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFP-KSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCC-CChHHHHHHHH
Confidence 456778888888877655 36667766554
No 394
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=70.23 E-value=1.5e+02 Score=31.13 Aligned_cols=183 Identities=13% Similarity=0.105 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCcchHHHHHHHHH-HCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 037409 98 DTVVSLFKRLNSNGLFPDLFVL-NLLINCLCKMGITSGAFVVLGRIL-RSCFTPNTVTFNFLINGLCAEGRIMEAARLFK 175 (603)
Q Consensus 98 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 175 (603)
.+.+...+.+.+....|+..+- ..+-+.|...|++++|+..--..- ...+.++...+.+++.-|... -.+++.+.++
T Consensus 40 sd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~ 118 (929)
T KOG2062|consen 40 SDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYK 118 (929)
T ss_pred hhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhc
Confidence 3444555566655544544443 334568999999999987654432 222344555555544333211 1112222222
Q ss_pred HHH-hcCCCCcHH-HHHHHHHHHHhcCChHHHH---------HHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC-hhHH
Q 037409 176 KLN-VFACDPNVV-TFNTLINGLCRTRNTLVAL---------KLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF-VDKA 243 (603)
Q Consensus 176 ~~~-~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a 243 (603)
.-. ..++++... ....++..+...+++..|+ .++++.+-.. ..+....+.++..+..... -+--
T Consensus 119 ~~~~~~~iD~rL~~iv~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~----d~~~~~~~yll~l~~s~v~~~efR 194 (929)
T KOG2062|consen 119 NPEQKSPIDQRLRDIVERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKS----DSVIGNLTYLLELLISLVNNREFR 194 (929)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccc----cccchHHHHHHHHHHHHHhhHHHH
Confidence 111 111111111 1222333333333333332 3334422110 1112223333333333222 2222
Q ss_pred HHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 244 KELLLQMKD---RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 244 ~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
.++++.+.+ ....|| |..+..+|....+.+.+.++++++.+.
T Consensus 195 ~~vlr~lv~~y~~~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 195 NKVLRLLVKTYLKLPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHccCCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 233333332 223344 556788888999999999999999874
No 395
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=69.99 E-value=44 Score=25.86 Aligned_cols=46 Identities=13% Similarity=0.105 Sum_probs=24.4
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 488 ACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
..+-+......++.|++.....-+.+|.+-+++.-|+++|+-...+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444444444455555555555555555555555555555555443
No 396
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.84 E-value=1.6e+02 Score=31.51 Aligned_cols=176 Identities=14% Similarity=0.136 Sum_probs=89.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 86 ILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF--VLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA 163 (603)
Q Consensus 86 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (603)
.+-..|...|+++.|+++-+. +|+.. ++..-...|.+.++|..|.+++.+..+ .+..+.--+..
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~------~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~ 428 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIART------RPDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLE 428 (911)
T ss_pred HHHHHHHhcchHHHHHHhccC------CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHh
Confidence 445567888888888876443 23322 233334567788899999999888733 23333333444
Q ss_pred cCCHhHHHHHHHHHHhcCCCCcHHHHHH-----HHHHHH-hcCC----hHHHHHHHHHHHHhcC------CccCCChhhH
Q 037409 164 EGRIMEAARLFKKLNVFACDPNVVTFNT-----LINGLC-RTRN----TLVALKLFEEMVNEFG------AICKPDVVTY 227 (603)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----l~~~~~-~~g~----~~~A~~~~~~~~~~~~------~~~~~~~~~~ 227 (603)
..+.+.-..++.+-.+ .++|...+-.. ++..+. +.++ .+++.+-++.-.+... .....+...+
T Consensus 429 ~~~~~~L~~~L~KKL~-~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nr 507 (911)
T KOG2034|consen 429 INQERALRTFLDKKLD-RLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNR 507 (911)
T ss_pred cCCHHHHHHHHHHHHh-hCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhH
Confidence 4554433333332222 12333222211 222222 1222 2333333322221100 0001122223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 228 NSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 228 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
.+....+...|+.++...+-.-+.+ |..++..+.+.+.+++|++++..-
T Consensus 508 etv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 508 ETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555667777777666555543 566778888888899988887653
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.53 E-value=88 Score=28.33 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCCHHHHHHHH
Q 037409 264 SLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF-------NAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 264 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~ 317 (603)
.+.+...+.+++++|+..+.+++..|+..+..+. ..+...|...|+.....+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 4556667788889999999998888877765543 34555666666665544443
No 398
>PRK12798 chemotaxis protein; Reviewed
Probab=69.38 E-value=1.1e+02 Score=29.53 Aligned_cols=156 Identities=11% Similarity=0.042 Sum_probs=64.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 377 DQKVEDAVCLYREMLSERIRPSVITYNTLLSG-LFQVGNLGDALKLIDKMQLN--DVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 377 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
.|+.+++.+.+..+.....++....+-.|+.+ .....++.+|+++|+...-. |.-........-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 45555555555555444444444444444443 23344555666666554321 1001112222233344455666555
Q ss_pred HHHHHHHHHc-CCCCChH-HHHHHHHHHHhCCChhHHHHHHHHHhhC-CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 037409 454 VQVFQAIRNC-KCELRIE-TYNCLINGLCKMGRLKTACKLFHRLQHK-GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDM 530 (603)
Q Consensus 454 ~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 530 (603)
..+-...... ...|-.. .+..+.....+..+-..-.. +..+... .+.--...|-.+...-.-.|+.+-|.-.-+++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 5444333321 1112111 11222223333222111111 2222221 11112345555555556666666666555555
Q ss_pred HHC
Q 037409 531 EAK 533 (603)
Q Consensus 531 ~~~ 533 (603)
+..
T Consensus 284 ~~L 286 (421)
T PRK12798 284 LKL 286 (421)
T ss_pred HHh
Confidence 544
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=69.30 E-value=23 Score=31.78 Aligned_cols=58 Identities=10% Similarity=0.049 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMA----AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
..++..|.+.|++++|.++++.+. +.|.......+...+..++.+.|+.++.+.+.=+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455666666666666666666664 2233323445555666666666776666655433
No 400
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.07 E-value=24 Score=34.07 Aligned_cols=100 Identities=9% Similarity=0.125 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhh-------CCCCCC-----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC--
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQH-------KGPIPD-----VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-- 533 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 533 (603)
+......++..+....++.+..+..+.... .|..|- -.+...|++.++-.|++..|++.++.+.-.
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Confidence 444445555566666666655555444211 111111 112345566667778888887777655311
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 534 ----NCVP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 534 ----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
.+++ ...++..++-+|...+++.+|.+.+...+-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122 234567777777777777777777777663
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.37 E-value=18 Score=25.24 Aligned_cols=46 Identities=9% Similarity=0.021 Sum_probs=23.1
Q ss_pred hCCChhHHHHHHHHHhhCCCCCC--HhHHHHHHHHHHHcCChhHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGPIPD--VVTCSTMIHWLCKEGQMDKANDL 526 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 526 (603)
...+.++|+..|...++.-..|. -.++..++.+|+..|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666555432221 12344445555555555555554
No 402
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.17 E-value=1.1e+02 Score=28.39 Aligned_cols=150 Identities=10% Similarity=-0.010 Sum_probs=85.5
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAK----NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----M 129 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 129 (603)
..+++..|...+...-..+ +......+...|.. ..+...|..+|+.+...| .+.....+...+.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4567888888888775422 22444445555543 235777888888777665 33344445555544 3
Q ss_pred CCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-------CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----
Q 037409 130 GITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG-------RIMEAARLFKKLNVFACDPNVVTFNTLINGLCR---- 198 (603)
Q Consensus 130 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 198 (603)
.+..+|..+++++.+.|..+.......+...|..-. +...|...+.+....+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 377778888888887765432222444444443321 2235777777766654 33344444433322
Q ss_pred cCChHHHHHHHHHHHHhc
Q 037409 199 TRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 199 ~g~~~~A~~~~~~~~~~~ 216 (603)
..+.++|...|....+.+
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 336677777777776654
No 403
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=67.07 E-value=41 Score=24.60 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=11.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 037409 545 LLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 545 l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
++......|++++|...+++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHH
Confidence 3444445555555555555554
No 404
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.01 E-value=2.1e+02 Score=31.85 Aligned_cols=156 Identities=9% Similarity=0.060 Sum_probs=87.7
Q ss_pred HHHhcCCHhHHHHHHHHHHhc-----------------------CCCCc-----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 037409 160 GLCAEGRIMEAARLFKKLNVF-----------------------ACDPN-----VVTFNTLINGLCRTRNTLVALKLFEE 211 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (603)
+|...|...+|+..|.+.... |-.|. ..-|...++.+-+.+-.+.+.++-..
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 466677888888777664321 21111 12255677888888888888888888
Q ss_pred HHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHH------------HHH
Q 037409 212 MVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWK------------EAK 279 (603)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~A~ 279 (603)
+++.-+...+.-..+++.+.......|.+-+|...+-.-... ..-......++..++.+|.++ +..
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npds--errrdcLRqlvivLfecg~l~~L~~fpfigl~~eve 1086 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDS--ERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVE 1086 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHH
Confidence 887643222222445667777777788887777665443221 112234445556666666653 333
Q ss_pred H-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 280 C-LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 280 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
. +++..-+....-....|+.|-..+...+++.+|--++
T Consensus 1087 ~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1087 DFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred HHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 3 3332222221122334555556667778877765543
No 405
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=66.40 E-value=86 Score=32.51 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM 286 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 286 (603)
.-.-++..|.+.|-.+.+.++.+.+-.+-. ...-|..-+..+.+.|+....-.+-..+.
T Consensus 407 ~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 407 DAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334455555555555555555554433311 12234444555555555555444444443
No 406
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.97 E-value=17 Score=35.36 Aligned_cols=105 Identities=14% Similarity=0.023 Sum_probs=74.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
+..+...+.++.|..++.++++. .|+.. .+..-..++.+.+++..|+.-+..+++.. +.....|..=..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 45566778899999999999875 44433 33334477888999999998888888765 4344555555666777788
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
+.+|...|+.... ..|+..-...++.-|-
T Consensus 88 ~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 8889988888877 4566666666655543
No 407
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.36 E-value=54 Score=30.38 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=75.8
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCK---CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
...|.-=.+-|.+..++..|...|.+-++.. ...+...|++-..+-...|++..|+.-....+..++. ....|-.=
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhh
Confidence 3456666777888899999999998877543 2335677888888888889999999999999987665 55666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
..++....++++|....++...
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhh
Confidence 7778888888999888887754
No 408
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.07 E-value=21 Score=23.63 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
++..++++.+... .-|..-.-.++.++...|++++|.++++++...
T Consensus 7 ~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 7 EELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344444444332 224444445667777777777777777766553
No 409
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=64.87 E-value=78 Score=27.65 Aligned_cols=103 Identities=16% Similarity=0.165 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC-CCCHhHHH--HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 037409 465 CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP-IPDVVTCS--TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVT 541 (603)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 541 (603)
+.+...-++.|+--|.-...+.+|...|..-....+ .++..+++ .-+......|+.++|++...++-..-+..|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 355566666766666655556666665554433222 33444444 345567788999999888877654433445544
Q ss_pred HHHHHH----HHHhcCCHHHHHHHHHHHHH
Q 037409 542 FCTLLR----GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 542 ~~~l~~----~~~~~g~~~~a~~~~~~~~~ 567 (603)
+..|.. -..+.|..++|+++.+.-+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 444432 24577888888887776554
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=64.82 E-value=57 Score=24.45 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=36.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFK 175 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 175 (603)
..++|-.+.+.+...+. ....+....+..+..+|+|++|.. .......||...|-+|.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45666666666665541 122222222345566666666611 111223455555554433 35666666666666
Q ss_pred HHHhcC
Q 037409 176 KLNVFA 181 (603)
Q Consensus 176 ~~~~~~ 181 (603)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665444
No 411
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.66 E-value=12 Score=23.76 Aligned_cols=26 Identities=15% Similarity=-0.074 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
....++-++.+.|++++|+++++.+|
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL 28 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALL 28 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34567778999999999999999876
No 412
>PRK12798 chemotaxis protein; Reviewed
Probab=64.63 E-value=1.4e+02 Score=28.92 Aligned_cols=50 Identities=14% Similarity=0.037 Sum_probs=22.4
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCcchHHHHHHHHH
Q 037409 94 NKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC-LCKMGITSGAFVVLGRIL 143 (603)
Q Consensus 94 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~ 143 (603)
+|+..+|.+.+..+.....++....+..|+.+ .....+...|+.+|+.+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aR 175 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQAR 175 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 45555555555554444333444444444332 223334555555555443
No 413
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.34 E-value=1.1e+02 Score=27.70 Aligned_cols=102 Identities=19% Similarity=0.101 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhcCCcc-h
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRL----NSNGLFPDLFVLNLLINCLCKMGITS-G 134 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~-~ 134 (603)
+++++|++++.+. ...+.+.|+...|-++..-+ .+.+.+.+......++..+...+.-+ .
T Consensus 4 kky~eAidLL~~G---------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~ 68 (260)
T PF04190_consen 4 KKYDEAIDLLYSG---------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE 68 (260)
T ss_dssp T-HHHHHHHHHHH---------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT
T ss_pred ccHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch
Confidence 4566666665543 23344555555444443332 23455556655556665555443222 2
Q ss_pred HHHHHHHHHH---CC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHH
Q 037409 135 AFVVLGRILR---SC--FTPNTVTFNFLINGLCAEGRIMEAARLFKK 176 (603)
Q Consensus 135 a~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 176 (603)
-..+...+++ .+ ..-+......+...|.+.|++.+|...|-.
T Consensus 69 r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 69 RKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp HHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 2222233322 11 223566777788888888888887766543
No 414
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=64.25 E-value=56 Score=25.31 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=28.0
Q ss_pred HHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 419 LKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
.+-++.+...++.|++......+.+|.+.+++..|.++|+-+..
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444555556666776666677777777777777777766553
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.34 E-value=1.5e+02 Score=28.62 Aligned_cols=92 Identities=7% Similarity=-0.044 Sum_probs=55.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCC---CCHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF-VQNNKKSKVVVLLHKMAAEKLVV---SDLSLSSKVVDLL 585 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~ 585 (603)
.+..+.+.|-+.-|.++.+-+...+..-|+......+..| .+.++++--+++++.......+. .-|......+-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 3455677888888888888888876333666666666655 46777777777777655411110 0122333444455
Q ss_pred HcCCcH---------------HHHHHHHHhh
Q 037409 586 SKDKKY---------------RECLNQFRHL 601 (603)
Q Consensus 586 ~~~g~~---------------~eA~~~~~~~ 601 (603)
...++- ++|...+.+.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHH
Confidence 555555 6777766654
No 416
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.90 E-value=41 Score=24.58 Aligned_cols=21 Identities=14% Similarity=0.031 Sum_probs=11.1
Q ss_pred HHHHHhcCChhHHHHHHHHHh
Q 037409 231 IDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 231 ~~~~~~~g~~~~a~~~~~~~~ 251 (603)
.......|++++|.+.+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445555565555555544
No 417
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=61.98 E-value=1e+02 Score=34.19 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=11.3
Q ss_pred cCCcHHHHHHHHHhh
Q 037409 587 KDKKYRECLNQFRHL 601 (603)
Q Consensus 587 ~~g~~~eA~~~~~~~ 601 (603)
..|+++.|+..+.++
T Consensus 913 hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 913 HLKRYEKALRHLSAC 927 (928)
T ss_pred hhCCHHHHHHHHHhh
Confidence 468899998887653
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.41 E-value=22 Score=23.54 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
...++.++...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445555555566666655555554
No 419
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=61.07 E-value=20 Score=20.60 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHH
Q 037409 576 SLSSKVVDLLSKDKKYRECLNQFR 599 (603)
Q Consensus 576 ~~~~~l~~~~~~~g~~~eA~~~~~ 599 (603)
+.+..++..+...|++++|+++++
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345567777888889999988844
No 420
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.05 E-value=94 Score=28.96 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=42.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH--HHHHHHHhcCChhHHHHHHHHHhh-----CCCCCChh-hHHHH
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN--SIIDGLCKDGFVDKAKELLLQMKD-----RNINPNVI-TYNSL 265 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~-~~~~l 265 (603)
...-+.++.++|++.++++.+.-.....|+.+.|. ...+.+...|+..++.+++++..+ .+++|++. .|+.+
T Consensus 83 ~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~l 162 (380)
T KOG2908|consen 83 VVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSL 162 (380)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHH
Confidence 33344556777777777776654333445555443 344556667777777777776665 35555433 34444
Q ss_pred HHHH
Q 037409 266 ICGF 269 (603)
Q Consensus 266 ~~~~ 269 (603)
-.-|
T Consensus 163 ssqY 166 (380)
T KOG2908|consen 163 SSQY 166 (380)
T ss_pred HHHH
Confidence 4333
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=59.84 E-value=1.3e+02 Score=26.85 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHC---CCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHC
Q 037409 521 DKANDLLLDMEAK---NCVPSEVTFCTLL-----RGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 521 ~~A~~~~~~~~~~---~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+.|.+.|+++.+. .++|...+...|+ -.|-..|+.++|.++.+++.+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4566666665432 2456555543332 2345689999999988887753
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=59.83 E-value=72 Score=23.95 Aligned_cols=79 Identities=15% Similarity=0.117 Sum_probs=36.6
Q ss_pred CCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHH
Q 037409 165 GRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAK 244 (603)
Q Consensus 165 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 244 (603)
...++|..+.+.+...+ .....+--..+..+.+.|++++| +..-... ..||...|..|.. .+.|.-+++.
T Consensus 20 HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~----~~pdL~p~~AL~a--~klGL~~~~e 89 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCH----CYPDLEPWAALCA--WKLGLASALE 89 (116)
T ss_dssp T-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS------GGGHHHHHHHH--HHCT-HHHHH
T ss_pred HHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccC----CCccHHHHHHHHH--HhhccHHHHH
Confidence 34566666666665543 12222223334455566666666 1111111 3456665554433 3566666666
Q ss_pred HHHHHHhhC
Q 037409 245 ELLLQMKDR 253 (603)
Q Consensus 245 ~~~~~~~~~ 253 (603)
..+.++...
T Consensus 90 ~~l~rla~~ 98 (116)
T PF09477_consen 90 SRLTRLASS 98 (116)
T ss_dssp HHHHHHCT-
T ss_pred HHHHHHHhC
Confidence 666655544
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.05 E-value=1.8e+02 Score=28.27 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=36.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCcchHHHHHHHHHHC
Q 037409 88 LTMLAKNKQYDTVVSLFKRLNSNGLFPDLF--VLNLLINCLC--KMGITSGAFVVLGRILRS 145 (603)
Q Consensus 88 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 145 (603)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|...++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456788888888888888776 444443 3444444443 455677788777776654
No 424
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=56.76 E-value=2.5e+02 Score=29.21 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=19.9
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 316 LLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
.++.++.+-+-.+......++..|.+.|-.+.+.++.+.+-.
T Consensus 392 ~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 392 RIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333333332333444455566666666666666666655433
No 425
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.52 E-value=95 Score=24.32 Aligned_cols=44 Identities=5% Similarity=-0.041 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 522 KANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
++.++|+.|...|+-.. +..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 66667777666654333 444566666666777777777766653
No 426
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=56.47 E-value=2.8e+02 Score=29.66 Aligned_cols=113 Identities=8% Similarity=0.026 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCcchHHHHH
Q 037409 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCL---CKMGITSGAFVVL 139 (603)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~ 139 (603)
+.-+.-+++-+..+ ..+......|+..+.+.|++++....-..|.+.- +..+..|...+... ...++...+..+|
T Consensus 96 ~~ei~t~~ee~ai~-~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ 173 (881)
T KOG0128|consen 96 NQEIRTLEEELAIN-SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELF 173 (881)
T ss_pred hhHHHHHHHHhccc-ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHH
Confidence 33344444444443 3467778889999999999988888777777653 55666666555433 3346777788888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHh-------cCCHhHHHHHHHHHHh
Q 037409 140 GRILRSCFTPNTVTFNFLINGLCA-------EGRIMEAARLFKKLNV 179 (603)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~ 179 (603)
++.+.... ++..|.-.+..+.. .++++.-..+|++...
T Consensus 174 ekal~dy~--~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 174 EKALGDYN--SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHhcccc--cchHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 88776543 34445444444332 3556666777776654
No 427
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=56.47 E-value=2.1e+02 Score=32.29 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=97.4
Q ss_pred HHHHHhCCCHHHHHH------HHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHh-------hCCCCCCHhHH
Q 037409 441 IDGLCKNGFVLEAVQ------VFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQ-------HKGPIPDVVTC 507 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~ 507 (603)
.+.....|.+.++.+ ++......-.+.....|..+...+-+.|+.++|...-.+.. ..+..-+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455666666666 55544433335566778888888888898888887765432 11111234456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCC
Q 037409 508 STMIHWLCKEGQMDKANDLLLDMEAK-----N--CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE-----KLV-VSD 574 (603)
Q Consensus 508 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~ 574 (603)
..+.......++...|...+.++... | -||...++..+...+...++++.|.++.+.+.+. ++. ...
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~ 1098 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELET 1098 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhh
Confidence 66666666667777888777776643 1 2334445555655566668888898888888753 211 124
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
...+..++......|++..|....
T Consensus 1099 ~~~~~~~a~l~~s~~dfr~al~~e 1122 (1236)
T KOG1839|consen 1099 ALSYHALARLFESMKDFRNALEHE 1122 (1236)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHH
Confidence 556677777777777777665543
No 428
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=56.39 E-value=1.3e+02 Score=28.07 Aligned_cols=53 Identities=19% Similarity=0.083 Sum_probs=23.8
Q ss_pred HhCCCHHHHHHHHHHHHHc---CCCCChHHH--HHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 445 CKNGFVLEAVQVFQAIRNC---KCELRIETY--NCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
.+.++.++|+++++++.+. .-.|+...| ..+++++...|+.+++.+.+++..+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344555665555555431 112233222 2333444445555555555554444
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=56.35 E-value=1.6e+02 Score=26.79 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=44.1
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH-HHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTF-CTL 545 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 545 (603)
-++.....++..|.+.|++.+|+..|-.-.. |+...+..++..+...|...++ ..| ...
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~----~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTD----PSAFAYVMLLEEWSTKGYPSEA----------------DLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-H----HHHHHHHHHHHHHHHHTSS--H----------------HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCC----hhHHHHHHHHHHHHHhcCCcch----------------hHHHHHH
Confidence 3677888888888899988888876543321 2333332234333333433332 222 223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+--|.-.|+...|...+....+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 33466677788888777766644
No 430
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.24 E-value=1.8e+02 Score=28.21 Aligned_cols=55 Identities=13% Similarity=0.171 Sum_probs=36.1
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHH--hHHHHHHHHH--hCCCHHHHHHHHHHHHHc
Q 037409 408 GLFQVGNLGDALKLIDKMQLNDVVPDSF--TFATYIDGLC--KNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 463 (603)
.+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345778888888888888775 444443 3444444443 356778888888877653
No 431
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.19 E-value=46 Score=28.48 Aligned_cols=45 Identities=4% Similarity=-0.093 Sum_probs=35.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
..+..++..+ ..|++.++..++.++...|+.++|..+.+++...-
T Consensus 130 ~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 130 YIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3344455554 46999999999999999999999999999998754
No 432
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.46 E-value=2.4e+02 Score=28.66 Aligned_cols=94 Identities=18% Similarity=0.053 Sum_probs=52.1
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC-RTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
..+.+.|.+..|+++.+-+.......|+.....+|..|+ +..+++--+++++.....+.-..-||-.--.+++..|...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 445667888888888777776643335666666666654 5667777777777765443222234332223344444444
Q ss_pred CC---hhHHHHHHHHHhh
Q 037409 238 GF---VDKAKELLLQMKD 252 (603)
Q Consensus 238 g~---~~~a~~~~~~~~~ 252 (603)
.. -+.|...+.+...
T Consensus 430 ~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALK 447 (665)
T ss_pred CChhhHHHHHHHHHHHHH
Confidence 33 2344444444443
No 433
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.60 E-value=1.3e+02 Score=29.06 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHC--CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 037409 119 LNLLINCLCKMGITSGAFVVLGRILRS--CFTPNTVTFNFLINGLCAEGRIMEAARLFKKLN 178 (603)
Q Consensus 119 ~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 178 (603)
+..|++...-.|++....+.++.+.+. |..|...+--.+.-+|.-.|++.+|.+.|-.+.
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655555555443 222222222334455666667777776666543
No 434
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.10 E-value=2.1e+02 Score=27.60 Aligned_cols=63 Identities=10% Similarity=-0.028 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 295 VTFNAMINYNCKDGKMDKVNRLLELMIQRG--VNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
..+.-+...|...|+++.|.+.|.+...-- .......+..+|..-...|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 355667777777778877777777754321 011122344444445556666666666655544
No 435
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.84 E-value=3.6e+02 Score=30.22 Aligned_cols=19 Identities=5% Similarity=-0.040 Sum_probs=9.9
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 037409 90 MLAKNKQYDTVVSLFKRLN 108 (603)
Q Consensus 90 ~~~~~g~~~~A~~~~~~~~ 108 (603)
+|...|...+|+..|.++.
T Consensus 929 ~yl~tge~~kAl~cF~~a~ 947 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSAL 947 (1480)
T ss_pred eeecCCchHHHHHHHHHHh
Confidence 3455555555555555544
No 436
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.59 E-value=2.3e+02 Score=27.77 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=36.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 86 ILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG--AFVVLGRILRSCFTPNTVTFNFLINGLCA 163 (603)
Q Consensus 86 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (603)
.++.-|...|+..-|..-+.++-.. ...++....++.+....++.+. |--++..+...-+.|+ .++..++..+..
T Consensus 55 sii~eyfstgdv~vaa~dl~elg~s--eyhpyfvkrlvsmamdrhdkekemasvlls~lyadvi~p~-qir~gf~~ll~s 131 (645)
T KOG0403|consen 55 SIIDEYFSTGDVVVAASDLKELGSS--EYHPYFVKRLVSMAMDRHDKEKEMASVLLSALYADVIDPD-QIRDGFIRLLES 131 (645)
T ss_pred HHHHHHccCCCchhhHHHHHHhccc--cccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcChH-HHHHHHHHHHHh
Confidence 5666677777777666555444322 2234444455555555544332 3344444444433433 233334444433
Q ss_pred cC
Q 037409 164 EG 165 (603)
Q Consensus 164 ~g 165 (603)
.+
T Consensus 132 ~d 133 (645)
T KOG0403|consen 132 AD 133 (645)
T ss_pred cc
Confidence 33
No 437
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.08 E-value=1.2e+02 Score=25.62 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=10.4
Q ss_pred HHHhCCChhHHHHHHHHHhh
Q 037409 478 GLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~ 497 (603)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44555555555555555544
No 438
>PRK14700 recombination factor protein RarA; Provisional
Probab=52.05 E-value=1.8e+02 Score=26.92 Aligned_cols=36 Identities=17% Similarity=0.219 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037409 95 KQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG 130 (603)
Q Consensus 95 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 130 (603)
.+.+.|+-++.+|++.|-.|....-..++-+.-.-|
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 356666666666666653333333333333333334
No 439
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.88 E-value=77 Score=27.11 Aligned_cols=33 Identities=18% Similarity=0.102 Sum_probs=22.2
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.|++..+..++.++...|+.++|.+..+++...
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456666666666777777777777776666664
No 440
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=51.33 E-value=52 Score=28.68 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=48.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLF 117 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 117 (603)
..|+.+.|.+++.+++..-|. ....|..+...--+.|+++.|.+.|++.++.+ ++|..
T Consensus 7 ~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld-p~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD-PEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC-ccccc
Confidence 468899999999999987655 67889999999999999999999999999876 44443
No 441
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.15 E-value=47 Score=23.35 Aligned_cols=13 Identities=15% Similarity=0.161 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHHH
Q 037409 553 NKKSKVVVLLHKM 565 (603)
Q Consensus 553 g~~~~a~~~~~~~ 565 (603)
|+.++|+..|++.
T Consensus 22 g~~e~Al~~Y~~g 34 (79)
T cd02679 22 GDKEQALAHYRKG 34 (79)
T ss_pred CCHHHHHHHHHHH
Confidence 4444444444443
No 442
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.15 E-value=54 Score=24.04 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 520 MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 520 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
.++-.+.++++...+....+-...+|+-.|.+.|+.+.|.+-|+.-... - |....|
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--F-PES~~f 108 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--F-PESGVF 108 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--C-ccchhH
Confidence 3444566777776654444445567777899999999999888876543 3 455544
No 443
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=50.23 E-value=26 Score=20.45 Aligned_cols=25 Identities=0% Similarity=0.278 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+|..|+++-...++|++|.+-|++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~a 27 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKA 27 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555666666666666665555543
No 444
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=49.68 E-value=1.9e+02 Score=25.62 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc-C-----------CCCChHHHHHHH
Q 037409 409 LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC-K-----------CELRIETYNCLI 476 (603)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-----------~~~~~~~~~~l~ 476 (603)
|.+..+..--.++.+-....++.-+...+..++ +...|+..+|+..++.-... | -.|++.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444333333333333344443333333333 34567777776666554321 1 145566666666
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCC
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPD 503 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~ 503 (603)
..|. .+++++|.+++.++-+.|..|.
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 5543 4567777777777777776643
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.54 E-value=1.1e+02 Score=25.74 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=10.4
Q ss_pred HHHhcCCHhHHHHHHHHHHh
Q 037409 160 GLCAEGRIMEAARLFKKLNV 179 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~ 179 (603)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 44555555555555555543
No 446
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.05 E-value=32 Score=29.90 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=32.6
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
.+.++.+.+.+++.++.+.-++ ....|-.+...-.+.|+++.|.+.|++.++.+
T Consensus 6 ~~~~D~~aaaely~qal~lap~-w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPE-WAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCch-hhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 4455666666666666664333 45556666666666666666666666666653
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.85 E-value=78 Score=28.95 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=23.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 144 (603)
+.|+.++|..+|+.++... +.++..+..++...-..++.-+|-++|-+++.
T Consensus 128 ~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt 178 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALT 178 (472)
T ss_pred hccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeee
Confidence 3455555555555555443 33444444444433333444444444444443
No 448
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=48.72 E-value=2.3e+02 Score=26.81 Aligned_cols=44 Identities=16% Similarity=0.131 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
|..+++.....|.++.++.+|++++..|.. |-.+.-..+++++-
T Consensus 143 WIC~Arl~~~~~~~e~vi~iyEeAi~agAq-PieElR~~l~diL~ 186 (353)
T PF15297_consen 143 WICLARLEPRTGPIEDVIAIYEEAILAGAQ-PIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHH
Confidence 444555555555555555555555555555 44455555555544
No 449
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.28 E-value=65 Score=34.22 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=40.7
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHH
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAN 524 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 524 (603)
...|+++.|++.-..+ .+..+|..|+....+.|+.+-|+..|++... |+.|...|.-.|+.++-.
T Consensus 654 Le~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred hhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 3456666665553322 2456666777766677777766666665543 333444455556666655
Q ss_pred HHHHHHH
Q 037409 525 DLLLDME 531 (603)
Q Consensus 525 ~~~~~~~ 531 (603)
++.+.+.
T Consensus 719 Km~~iae 725 (1202)
T KOG0292|consen 719 KMMKIAE 725 (1202)
T ss_pred HHHHHHH
Confidence 5544443
No 450
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.23 E-value=2.2e+02 Score=26.11 Aligned_cols=64 Identities=6% Similarity=0.082 Sum_probs=34.1
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 361 RHDVYSYNILINANCKDQKVEDAVCLYREMLSE-RIRPSVITYNTLLSGLFQVGNLGDALKLIDK 424 (603)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (603)
.++..+....+..++..+++.+-.+.+...... +...|...|..++......|+..-...+.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 344445555555555566666555555554433 3344555566666665666665555444443
No 451
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.12 E-value=2.2e+02 Score=26.10 Aligned_cols=63 Identities=11% Similarity=0.069 Sum_probs=35.1
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 037409 396 RPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN-DVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 396 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
.++..+...++..++..+++.+-.++++..... +...|...|..++..-...|+..-...+.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344445555566666666666666666555433 344455556666666666666555555443
No 452
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=47.18 E-value=2.9e+02 Score=27.11 Aligned_cols=61 Identities=11% Similarity=0.105 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
..|+.-|...|+..+|...++++---.+. ....+..++.+..+.|+-...+.++++.-+.|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFh-HEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFH-HEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcch-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 34555666667777777666665322111 33455566666666666666666665555443
No 453
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.57 E-value=3e+02 Score=27.20 Aligned_cols=87 Identities=7% Similarity=-0.072 Sum_probs=40.1
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 037409 196 LCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (603)
+...|+++.+...+...... ......+...+++...+.|++++|..+-.-|....++ ++..........-..|-+
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~----~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~ 407 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKI----IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLF 407 (831)
T ss_pred HHHhhhHHHHHHHhhchhhh----hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHH
Confidence 33455666655555444332 2223344455555555566666666555555544332 222222222222233445
Q ss_pred HHHHHHHHHHHH
Q 037409 276 KEAKCLFIEMMD 287 (603)
Q Consensus 276 ~~A~~~~~~~~~ 287 (603)
+++.-.++++..
T Consensus 408 d~~~~~wk~~~~ 419 (831)
T PRK15180 408 DKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhc
Confidence 555555555543
No 454
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.51 E-value=2.6e+02 Score=30.16 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=110.3
Q ss_pred hcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037409 198 RTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKE 277 (603)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 277 (603)
-+.++++.+.+.+...-.+ .++|..+.+.|-.+-|+...+.-..+ ......+|+++.
T Consensus 605 i~k~ydeVl~lI~ns~LvG-----------qaiIaYLqKkgypeiAL~FVkD~~tR------------F~LaLe~gnle~ 661 (1202)
T KOG0292|consen 605 LNKKYDEVLHLIKNSNLVG-----------QAIIAYLQKKGYPEIALHFVKDERTR------------FELALECGNLEV 661 (1202)
T ss_pred HhhhhHHHHHHHHhcCccc-----------HHHHHHHHhcCCcceeeeeecCcchh------------eeeehhcCCHHH
Confidence 3456777666655443221 34566677788888887766543322 223457789998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 278 AKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 278 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
|++.-+++ .+..+|..|......+|+.+-|...|++... |..|--.|.-.|+.++-.++...+..
T Consensus 662 ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~ 726 (1202)
T KOG0292|consen 662 ALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI 726 (1202)
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh
Confidence 88776554 2678899999999999999999988887653 33333446677888887777666654
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037409 358 KGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQL 427 (603)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (603)
++ |... ......-.|+.++-.+++...-.. | ..|. .-...|.-++|.++.++...
T Consensus 727 r~---D~~~---~~qnalYl~dv~ervkIl~n~g~~---~--layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 727 RN---DATG---QFQNALYLGDVKERVKILENGGQL---P--LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred hh---hhHH---HHHHHHHhccHHHHHHHHHhcCcc---c--HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 32 2211 111222367777777777654321 1 1221 12345777888888887755
No 455
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=45.88 E-value=1.3e+02 Score=22.78 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=18.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 189 FNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56667777777777777777776665
No 456
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=45.81 E-value=72 Score=29.26 Aligned_cols=78 Identities=10% Similarity=0.109 Sum_probs=42.1
Q ss_pred CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHH-HHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 432 PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNC-LINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
.|+..|...+....+.+.+.+...++.+..... |.++..|-. -..-+...++++.+..+|.+.+..++. ++..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHHHH
Confidence 355555555554455566666666666665543 445554432 222334556666666666666665554 45555443
Q ss_pred H
Q 037409 511 I 511 (603)
Q Consensus 511 ~ 511 (603)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 457
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.53 E-value=2.5e+02 Score=26.01 Aligned_cols=53 Identities=13% Similarity=0.114 Sum_probs=32.3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 157 LINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 157 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
++....+.++..+..+.+..+. ....-...+..+...|++..|++++.+..+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4455555555555555555554 2333445566677788888888887776653
No 458
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=45.52 E-value=4.1e+02 Score=28.47 Aligned_cols=97 Identities=11% Similarity=0.103 Sum_probs=55.4
Q ss_pred CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHH---HhcCChHHHHHHHHHHHHhcCCccCCChhh
Q 037409 150 NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGL---CRTRNTLVALKLFEEMVNEFGAICKPDVVT 226 (603)
Q Consensus 150 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (603)
+...++.||..+.+.|+.++....-.+|.+.- +.+...|..-+.-. ...++..++...|++.+... .++..
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy-----~~v~i 185 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY-----NSVPI 185 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc-----ccchH
Confidence 45566777777888888777666666665542 44455555444332 23466677777777777542 34445
Q ss_pred HHHHHHHHHhc-------CChhHHHHHHHHHhh
Q 037409 227 YNSIIDGLCKD-------GFVDKAKELLLQMKD 252 (603)
Q Consensus 227 ~~~l~~~~~~~-------g~~~~a~~~~~~~~~ 252 (603)
|.-.+..+... ++++....+|.+...
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 55555544432 334555555555443
No 459
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=44.72 E-value=30 Score=27.09 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=20.2
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHH
Q 037409 235 CKDGFVDKAKELLLQMKDRNINPNVITYNSLICG 268 (603)
Q Consensus 235 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 268 (603)
...|.-.+|..+|..|++.|.+||. |+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3445566777777777777776653 5555543
No 460
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.69 E-value=4.9e+02 Score=29.07 Aligned_cols=93 Identities=9% Similarity=-0.069 Sum_probs=39.5
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
++...-...+.++.+.|..+.+...+..+++. ++...-...+.++...+. +++...+..+++ .|+..+-...+
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~ 859 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEALT---DPHLDVRKAAV 859 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHH
Confidence 34555555555555555544333333333321 233333334444444433 334444444443 34444444444
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037409 547 RGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~ 566 (603)
.++.+.+....+...+..+.
T Consensus 860 ~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 860 LALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHhccCCCHHHHHHHHHHH
Confidence 44444322234444444444
No 461
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=44.20 E-value=1.6e+02 Score=27.11 Aligned_cols=57 Identities=11% Similarity=0.165 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
.++++.+.+.++.|.-.++..+.-.+.+.=.+.+.+.+|+.+.. |..-+..++..|+
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCc 319 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICC 319 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHH
Confidence 45666666667777777777777777777777777777777765 3333566665554
No 462
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.06 E-value=50 Score=30.21 Aligned_cols=36 Identities=31% Similarity=0.364 Sum_probs=21.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
|+..|....+.||+++|+.+++++.+.|+.--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 456666666666666666666666666644333333
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=43.66 E-value=1.6e+02 Score=23.78 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
...++..+.+.+++-.|..+|+++.+.+.+.+..|....+..+...|-
T Consensus 23 R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 23 RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 456677777777777777777777776655555665556666666553
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.64 E-value=1.2e+02 Score=27.27 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=30.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAK----N-CVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
.++.-|...|++++|.++|+.+... | ..+...+...+..++.+.|+.+..+.+.=+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4555566666666666666666422 1 012233445555666666666665554433
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.64 E-value=72 Score=29.27 Aligned_cols=80 Identities=11% Similarity=0.035 Sum_probs=54.0
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH-HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 465 CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST-MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
...|+..|...+..-.+.|.+.+...++.+..+.+|. |+..|-. ...-+...++++.+..+|.+.+..+ +.++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~-nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPL-NVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHH
Confidence 3556777777776666677777788888888777665 6666654 3344566778888888888877766 45566665
Q ss_pred HHH
Q 037409 544 TLL 546 (603)
Q Consensus 544 ~l~ 546 (603)
...
T Consensus 181 eyf 183 (435)
T COG5191 181 EYF 183 (435)
T ss_pred HHH
Confidence 443
No 466
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.19 E-value=2.6e+02 Score=25.51 Aligned_cols=52 Identities=13% Similarity=0.144 Sum_probs=37.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH-------HHHHHHHhcCCHHHHHH
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN-------SLICGFCCVDDWKEAKC 280 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~~~~~~A~~ 280 (603)
-+.+-..+.+++++|+..+.++...|+..+..+.+ .+...|...|+...--+
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 35666788899999999999999999888765543 34556666666554433
No 467
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.71 E-value=54 Score=30.02 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNL 121 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 121 (603)
|+..|....+.||.++|+++++++.+.|...-..++..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56888888888999999999999888886544444433
No 468
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.68 E-value=3.4e+02 Score=26.67 Aligned_cols=207 Identities=15% Similarity=0.136 Sum_probs=96.1
Q ss_pred HHhcCChhHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC
Q 037409 234 LCKDGFVDKAKELLLQMKDRNINPNVIT--YNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVV--TFNAMINYNCKDGK 309 (603)
Q Consensus 234 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~ 309 (603)
.+..|+.+-+ +.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3456666544 44445676665432 233444555667765 444455666555432 12334556667788
Q ss_pred HHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcch--HHHHHHHHHhcCChHHHH
Q 037409 310 MDKVNRLLELMIQRGVNPDTV---TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYS--YNILINANCKDQKVEDAV 384 (603)
Q Consensus 310 ~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~ 384 (603)
.+.+..+++ .|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+.
T Consensus 81 ~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 81 VKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 776655553 33221110 1112333344566654 4444555565544321 122334445567665444
Q ss_pred HHHHHHHhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHh---HHHHHHHHHhCCCHHHHHHHHH
Q 037409 385 CLYREMLSERIRPS---VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFT---FATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 385 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
.++ +.|..++ ....+.+. ..+..|+.+-+ +.+.+.|..++... ....+...+..|+.+ +.+
T Consensus 153 ~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~eiv----~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~ 219 (413)
T PHA02875 153 LLI----DHKACLDIEDCCGCTPLI-IAMAKGDIAIC----KMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVR 219 (413)
T ss_pred HHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHH
Confidence 443 3433322 22233333 33445665433 33444555444321 123344334556554 334
Q ss_pred HHHHcCCCCCh
Q 037409 459 AIRNCKCELRI 469 (603)
Q Consensus 459 ~~~~~~~~~~~ 469 (603)
.+.+.|..++.
T Consensus 220 ~Ll~~gad~n~ 230 (413)
T PHA02875 220 LFIKRGADCNI 230 (413)
T ss_pred HHHHCCcCcch
Confidence 45556656554
No 469
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.21 E-value=2.9e+02 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhCCCHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAV 454 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~ 454 (603)
+|..|+.+++..|+.+..+
T Consensus 323 ~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhhHHHHHHhcCChHHHHH
Confidence 5677777777777766553
No 470
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.45 E-value=1.7e+02 Score=23.70 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=13.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPD 503 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 503 (603)
++..+.+.++.-.|..+++.+.+.++..+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~is 54 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGIS 54 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCC
Confidence 33444444444555555555555444433
No 471
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.32 E-value=2.7e+02 Score=28.88 Aligned_cols=75 Identities=15% Similarity=0.203 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhCCChh------HHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCK--CELRIETYNCLINGLCKMGRLK------TACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
+++++|...|++..+.++++.+...+ -+.-...+|..++-..+.|+++ .|.+.++... ..-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78999999999999999999988643 2334577888888888888754 3444554444 33466777777
Q ss_pred HHHHHH
Q 037409 511 IHWLCK 516 (603)
Q Consensus 511 ~~~~~~ 516 (603)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665443
No 472
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=39.98 E-value=3.6e+02 Score=26.17 Aligned_cols=63 Identities=11% Similarity=-0.038 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLND--VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
..+.-+.+.|...|+++.|++.+.+....- .+-....+..+|..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 345666677777888888888877754321 011123344444445556777777777666654
No 473
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=39.92 E-value=3.3e+02 Score=25.67 Aligned_cols=121 Identities=11% Similarity=0.085 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-h-----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChh
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLC-K-----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMD 521 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 521 (603)
+-++++..++++...++ .|.+......|.++- + .-+|..-..+|+.+....+.| .++.|--+ +..+..-.+
T Consensus 270 ~lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP-vV~LNRAV-Ala~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP-VVTLNRAV-ALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC-eEeehHHH-HHHHhhhHH
Confidence 45788888888888877 477777777666553 2 236777788888887765553 34455433 344444456
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 522 KANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.++...+-+.+.+--.+ ...+..-+..+.+.|..++|..-|++.+.....
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 77777777776531112 222333456678899999999999998875443
No 474
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.10 E-value=4.1e+02 Score=26.54 Aligned_cols=157 Identities=10% Similarity=0.013 Sum_probs=85.4
Q ss_pred hcCCHHHHHHHHHHHhhC-CCCCC--H------HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHH--HHHHHHHH
Q 037409 411 QVGNLGDALKLIDKMQLN-DVVPD--S------FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIET--YNCLINGL 479 (603)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~-~~~~~--~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~ 479 (603)
-.|++.+|++-+..|..- .-.|. . ..-..+...|+..+.++.|...|....+.-...+... -..+...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 457777777777776531 11122 1 1111223334556778888888877765433333332 23455667
Q ss_pred HhCCChhHHHHHHHHHhhCCCCC-CH-----hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-----CHHHHHHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIP-DV-----VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP-----SEVTFCTLLRG 548 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~ 548 (603)
.+.|+-+.-.++++.+-..+-.+ .. ..+-..+-....++++.||..++.+-++..-.. ..-.+..|...
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v 494 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV 494 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 77777776666666654321110 00 011111222346788889888888776542111 12233455566
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~ 567 (603)
....|+..++.+...-..+
T Consensus 495 ~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 495 FLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHhcchHHHHhccchHHH
Confidence 6778888888777766553
No 475
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.96 E-value=3.4e+02 Score=25.23 Aligned_cols=43 Identities=23% Similarity=0.281 Sum_probs=27.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQL 427 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (603)
++++.+...++.|.-.++..+.-.+.+.=.+.+++.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4555555666666666666666566666666666666666654
No 476
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=36.69 E-value=3.1e+02 Score=24.47 Aligned_cols=37 Identities=3% Similarity=-0.118 Sum_probs=15.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 267 CGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINY 303 (603)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (603)
..+-+.++++++...++++...+...+..-.+.+..+
T Consensus 9 klaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsva 45 (236)
T PF00244_consen 9 KLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVA 45 (236)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHH
Confidence 3334444455555555544444433343333333333
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.66 E-value=1.6e+02 Score=21.21 Aligned_cols=12 Identities=42% Similarity=0.448 Sum_probs=4.4
Q ss_pred CHHHHHHHHHHH
Q 037409 344 RISRARELFVSM 355 (603)
Q Consensus 344 ~~~~a~~~~~~~ 355 (603)
+.+.|.+++..+
T Consensus 51 ~~~~ar~LL~~L 62 (88)
T cd08819 51 NESGARELLKRI 62 (88)
T ss_pred cHHHHHHHHHHh
Confidence 333333333333
No 478
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.49 E-value=1.1e+02 Score=19.02 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=18.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037409 92 AKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLI 123 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 123 (603)
.+.|-.+++..++++|...|+.-++..+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666555555555444
No 479
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=36.33 E-value=98 Score=21.20 Aligned_cols=31 Identities=13% Similarity=0.176 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 519 QMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 519 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
+.+.|..++..+.... +-++..|+.+...+.
T Consensus 12 DtEmA~~mL~DLr~de-kRsPQLYnAI~k~L~ 42 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDE-KRSPQLYNAIGKLLD 42 (82)
T ss_pred HHHHHHHHHHHhcchh-hcChHHHHHHHHHHH
Confidence 4455555555555432 345555555554443
No 480
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=36.08 E-value=2.3e+02 Score=22.87 Aligned_cols=80 Identities=18% Similarity=0.362 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDV-----VPDSFTFATYIDGLCKNGF-VLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
+.++.-....+++...+.+++.+..... ..+...+..++.+..+... --.+..+|.-+.+.+.+.++..|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4444444444555555555544421100 1233455566666544444 334455555555555566666666666
Q ss_pred HHHHhC
Q 037409 477 NGLCKM 482 (603)
Q Consensus 477 ~~~~~~ 482 (603)
.++.+-
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 665443
No 481
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=35.93 E-value=82 Score=17.59 Aligned_cols=12 Identities=17% Similarity=0.246 Sum_probs=5.2
Q ss_pred hHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEA 532 (603)
Q Consensus 521 ~~A~~~~~~~~~ 532 (603)
+.|..+|++.+.
T Consensus 4 dRAR~IyeR~v~ 15 (32)
T PF02184_consen 4 DRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 482
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.69 E-value=3.8e+02 Score=25.16 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHhhCCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 240 VDKAKELLLQMKDRNI----NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
.+.|.+.|+.....+. ..++.....+.....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHH
Confidence 3445555555544211 22333344444444455554433333333332 2244444455555555555555555
Q ss_pred HHHHHHHC
Q 037409 316 LLELMIQR 323 (603)
Q Consensus 316 ~~~~~~~~ 323 (603)
+++.+...
T Consensus 223 ~l~~~l~~ 230 (324)
T PF11838_consen 223 LLDLLLSN 230 (324)
T ss_dssp HHHHHHCT
T ss_pred HHHHHcCC
Confidence 55555543
No 483
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.36 E-value=3.2e+02 Score=24.25 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=20.8
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL 467 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (603)
.|.+.....++..|. .+++++|.+++.++.+.|+.|
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 345555555555543 356666666666666666544
No 484
>PHA02875 ankyrin repeat protein; Provisional
Probab=35.33 E-value=4.4e+02 Score=25.87 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=99.7
Q ss_pred HHHHHHHHHhcCCccCCChhh--HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCCHHHHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVT--YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVI--TYNSLICGFCCVDDWKEAKCL 281 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~ 281 (603)
.++++.+.+.+ ..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+..+
T Consensus 15 ~~iv~~Ll~~g---~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~L 87 (413)
T PHA02875 15 LDIARRLLDIG---INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEEL 87 (413)
T ss_pred HHHHHHHHHCC---CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHH
Confidence 67778888775 4444322 233445556677765 444555566555432 122344555677887765555
Q ss_pred HHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 282 FIEMMDNGVQPDVV---TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVT--YNSLMDGFCLVGRISRARELFVSMV 356 (603)
Q Consensus 282 ~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~ 356 (603)
+ +.|...+.. .-.+.+...+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+.+..+ .
T Consensus 88 l----~~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l 155 (413)
T PHA02875 88 L----DLGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----I 155 (413)
T ss_pred H----HcCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----H
Confidence 5 333221111 1123344455667664 4455556676654321 12334445567776654444 4
Q ss_pred HcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037409 357 SKGCRHD---VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVIT---YNTLLSGLFQVGNLGDALKLIDKMQLNDV 430 (603)
Q Consensus 357 ~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (603)
+.|..++ ..-.+.+. ..+..|+.+ +.+.+.+.|..++... ..+.+......|+.+ +.+.+.+.|.
T Consensus 156 ~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ga 226 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGA 226 (413)
T ss_pred hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCc
Confidence 4444332 22233333 334456654 3444555665554322 123444344556654 4445556677
Q ss_pred CCCH
Q 037409 431 VPDS 434 (603)
Q Consensus 431 ~~~~ 434 (603)
.++.
T Consensus 227 d~n~ 230 (413)
T PHA02875 227 DCNI 230 (413)
T ss_pred Ccch
Confidence 6664
No 485
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.27 E-value=1.1e+02 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 037409 367 YNILINANCKDQKVEDAVCLYREMLS 392 (603)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 392 (603)
|..|+..|...|.+++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 44555555555555555555555444
No 486
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=35.19 E-value=6.9e+02 Score=28.61 Aligned_cols=156 Identities=15% Similarity=0.042 Sum_probs=95.0
Q ss_pred HHhcCCHHHHHH------HHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHH-------HcCCCCChHHHHHH
Q 037409 409 LFQVGNLGDALK------LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIR-------NCKCELRIETYNCL 475 (603)
Q Consensus 409 ~~~~~~~~~a~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 475 (603)
....|.+.++.+ ++...-..-.++....|..+...+.+.|+.++|...-.... ....+.+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344455555555 44422211123345567777777888899988887654432 22323345667777
Q ss_pred HHHHHhCCChhHHHHHHHHHhhC-----CC-CCCH-hHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CC---CCHHH
Q 037409 476 INGLCKMGRLKTACKLFHRLQHK-----GP-IPDV-VTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CV---PSEVT 541 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~---~~~~~ 541 (603)
...+...++...|...+.+.... |. .|.. .+++.+-..+...++++.|+++++.+.+.. .+ +...+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 76777777888888888777653 22 2333 344444444555588899999998887642 11 23455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
+..+.+.+...|++..|....+.
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhh
Confidence 67777777777777776655444
No 487
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.18 E-value=89 Score=28.59 Aligned_cols=56 Identities=14% Similarity=-0.008 Sum_probs=42.4
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
..+.|+.++|.++|+.++... +.++.++..++.......+.-+|-.+|-+++...+
T Consensus 126 ~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 457889999999999998875 55677777777777777777888888877775433
No 488
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=34.95 E-value=2.6e+02 Score=25.42 Aligned_cols=57 Identities=12% Similarity=-0.136 Sum_probs=28.7
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
.+...++++.|....++.+..+ +.|+.-+.--+-+|.+.|...-|.+-++..++.-+
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~-P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLN-PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhC-CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 3445555555555555555543 33444444444455555555555555555544433
No 489
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.15 E-value=3.6e+02 Score=28.09 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=55.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC--CCCCChhhHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDR--NINPNVITYNSLICGFCCVDDWK------EAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
++..+|..+|++-.+.++++..... |-+.-...+|..++...+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888899999999999888887764 22333456777788888888753 4444444444 33466777776
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 037409 301 INYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 301 ~~~~~~~~~~~~a~~~~~~~~ 321 (603)
+.+....-+-....-++.+.+
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 665544333333333344433
No 490
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.12 E-value=4.1e+02 Score=25.08 Aligned_cols=83 Identities=17% Similarity=0.125 Sum_probs=36.9
Q ss_pred CHhHHHHHHHHHHhcCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHH
Q 037409 166 RIMEAARLFKKLNVFACDPNVV-TFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAK 244 (603)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 244 (603)
++.....+|+.+... .|+++ +.|. ..+.....-.+.++...+-+...+. .......+..-...+.+.|+.++|.
T Consensus 311 DW~~I~aLYdaL~~~--apSPvV~LNR-AVAla~~~Gp~agLa~ve~L~~~~~--L~gy~~~h~~RadlL~rLgr~~eAr 385 (415)
T COG4941 311 DWPAIDALYDALEQA--APSPVVTLNR-AVALAMREGPAAGLAMVEALLARPR--LDGYHLYHAARADLLARLGRVEEAR 385 (415)
T ss_pred ChHHHHHHHHHHHHh--CCCCeEeehH-HHHHHHhhhHHhHHHHHHHhhcccc--cccccccHHHHHHHHHHhCChHHHH
Confidence 444555555555444 23332 2222 2223333344555555555554421 1111122233344555666666666
Q ss_pred HHHHHHhhC
Q 037409 245 ELLLQMKDR 253 (603)
Q Consensus 245 ~~~~~~~~~ 253 (603)
..|++....
T Consensus 386 ~aydrAi~L 394 (415)
T COG4941 386 AAYDRAIAL 394 (415)
T ss_pred HHHHHHHHh
Confidence 666665544
No 491
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.03 E-value=3.9e+02 Score=24.80 Aligned_cols=70 Identities=10% Similarity=0.251 Sum_probs=37.3
Q ss_pred HhcCCHHHHHHHHHH-HhhCCCCCCHH----hHHHHHHHHHhCCCHHHHHHHH-HHHHHcCCCCChHHHHHHHHHHHhCC
Q 037409 410 FQVGNLGDALKLIDK-MQLNDVVPDSF----TFATYIDGLCKNGFVLEAVQVF-QAIRNCKCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~-~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 483 (603)
.+...+++.....++ |++.+ -|++. .|..++.+ ..|.+-.++. +.+.+ ....|..|+.+++..|
T Consensus 266 s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~af~s~g 335 (412)
T KOG2297|consen 266 SEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAAFCSQG 335 (412)
T ss_pred ccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHHHhcCC
Confidence 344456666666654 44444 44553 45555544 3333222221 22222 2346888999999999
Q ss_pred ChhHHH
Q 037409 484 RLKTAC 489 (603)
Q Consensus 484 ~~~~A~ 489 (603)
+.+..+
T Consensus 336 ~sEL~L 341 (412)
T KOG2297|consen 336 QSELEL 341 (412)
T ss_pred hHHHHH
Confidence 877553
No 492
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=33.91 E-value=1.1e+02 Score=20.51 Aligned_cols=44 Identities=9% Similarity=0.046 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...++.++...++..-.++++..+.++.+.| ..+..+|..-.+.
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~ 51 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRS 51 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 3344555555555555555555555555555 3344444433333
No 493
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.41 E-value=43 Score=26.29 Aligned_cols=30 Identities=20% Similarity=0.269 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTM 90 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (603)
.|+-.+|-.+|.+|++.|.+|+ .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3555667777777777665553 46666543
No 494
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.74 E-value=2.9e+02 Score=23.09 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITS 133 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (603)
...++..+...++.-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 28 R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 28 RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 44556666656666677777777776665555556555666666665443
No 495
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=32.32 E-value=4.2e+02 Score=24.73 Aligned_cols=51 Identities=6% Similarity=0.004 Sum_probs=30.5
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN-NKKSKVVVLLHKM 565 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~ 565 (603)
.+..+++.+..+..+++.+.|..| ......|....... |..+.-...+...
T Consensus 265 ~a~S~d~~~~v~~~Rei~~sg~~~-~~lmsQLa~vi~~~~g~~d~~k~~~~~k 316 (346)
T KOG0989|consen 265 LALSADTPNTVKRVREIMRSGYSP-LQLMSQLAEVIMDIIGLSDEQKAQISLK 316 (346)
T ss_pred HHHccChHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 456788888888888888877433 23345555555554 5554444444433
No 496
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=32.19 E-value=2e+02 Score=20.81 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=6.3
Q ss_pred CChhHHHHHHHHHh
Q 037409 483 GRLKTACKLFHRLQ 496 (603)
Q Consensus 483 g~~~~A~~~~~~~~ 496 (603)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 497
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.13 E-value=4.3e+02 Score=24.74 Aligned_cols=170 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC
Q 037409 404 TLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 483 (603)
.+++.--+..+..+-++.-....+ +.|.-.+-..++ +-.....+.+|.++|++..+.+-. .|.+..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALe--IN~eCA~AyvLL-AEEEa~Ti~~AE~l~k~ALka~e~-----------~yr~sq 254 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALE--INNECATAYVLL-AEEEATTIVDAERLFKQALKAGET-----------IYRQSQ 254 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHh--cCchhhhHHHhh-hhhhhhhHHHHHHHHHHHHHHHHH-----------HHhhHH
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 484 RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK-NCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 484 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
....--...+.+.+.+...-..+-..+..+..+.|+..+|.+.++.+.+. .+..--.+...|+.++....-+.+...++
T Consensus 255 q~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 255 QCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 563 HKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
-+.-+.... .+..+...-+-.-.++
T Consensus 335 akYDdislP-kSA~icYTaALLK~RA 359 (556)
T KOG3807|consen 335 AKYDDISLP-KSAAICYTAALLKTRA 359 (556)
T ss_pred HhhccccCc-chHHHHHHHHHHHHHH
No 498
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.03 E-value=5.8e+02 Score=26.20 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=104.5
Q ss_pred CCCHHHHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHHHH-------hCCCCC------
Q 037409 59 NITSNEAVYFFDCMIKMKPS-----------PGMTSFTILLTMLAKNKQYDTVVSLFKRLN-------SNGLFP------ 114 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~------ 114 (603)
...+.+|..-|.-+....++ -.+.+...+..++-.+|+.+-|..+.++.+ .-.+.|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34677888888766544322 235566777788889998888777666543 222211
Q ss_pred -------CHHHHHHH---HHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHH-hcCCHhHHHHHHHHHHhcC--
Q 037409 115 -------DLFVLNLL---INCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLC-AEGRIMEAARLFKKLNVFA-- 181 (603)
Q Consensus 115 -------~~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~-- 181 (603)
+...|.++ +..+.+.|-+..|.++-.-+.+..+.-|+.....+|+.|+ ++.+++-.+++++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 33334443 3466789999999999999999877767888888888776 6778888888888775432
Q ss_pred -CCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHh
Q 037409 182 -CDPNVVTFNTLINGLCRTRN---TLVALKLFEEMVNE 215 (603)
Q Consensus 182 -~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 215 (603)
.-|+..--.++...|.+... ...|...+.++...
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~ 448 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKH 448 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh
Confidence 23554444455566665554 45677777777664
No 499
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=31.99 E-value=3.6e+02 Score=23.78 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=60.4
Q ss_pred CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---ChHHH--HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH
Q 037409 430 VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL---RIETY--NCLINGLCKMGRLKTACKLFHRLQHKGPIPDV 504 (603)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 504 (603)
+.+...-++.|+--|.-...+.+|...|..-. ++.+ +...+ ..-|......|++++|+.....+-..-+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 44555556666666666666666666664433 3333 33333 34566678999999999998877653333343
Q ss_pred hHHHHHHH----HHHHcCChhHHHHHHHHHHH
Q 037409 505 VTCSTMIH----WLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 505 ~~~~~l~~----~~~~~g~~~~A~~~~~~~~~ 532 (603)
..+-.+.. -+.+.|..++|+++.+.=+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 33322222 24577888888888776554
No 500
>PF13934 ELYS: Nuclear pore complex assembly
Probab=31.15 E-value=3.7e+02 Score=23.76 Aligned_cols=81 Identities=11% Similarity=0.007 Sum_probs=39.8
Q ss_pred HHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHH
Q 037409 126 LCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVA 205 (603)
Q Consensus 126 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 205 (603)
+...+++++|...+-.- ......-..++.++...|+.+.|..+++...-. ..+......++.. ...+...+|
T Consensus 88 ~LD~~~~~~A~~~L~~p-----s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~--l~s~~~~~~~~~~-La~~~v~EA 159 (226)
T PF13934_consen 88 LLDHGDFEEALELLSHP-----SLIPWFPDKILQALLRRGDPKLALRYLRAVGPP--LSSPEALTLYFVA-LANGLVTEA 159 (226)
T ss_pred HhChHhHHHHHHHhCCC-----CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCC--CCCHHHHHHHHHH-HHcCCHHHH
Confidence 34455666666655211 111122234666666677777777777665321 1112222222333 455677777
Q ss_pred HHHHHHHHH
Q 037409 206 LKLFEEMVN 214 (603)
Q Consensus 206 ~~~~~~~~~ 214 (603)
...-+...+
T Consensus 160 f~~~R~~~~ 168 (226)
T PF13934_consen 160 FSFQRSYPD 168 (226)
T ss_pred HHHHHhCch
Confidence 666555443
Done!