Query 037409
Match_columns 603
No_of_seqs 791 out of 3352
Neff 11.8
Searched_HMMs 29240
Date Mon Mar 25 20:30:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-44 1E-48 371.7 43.9 506 59-586 66-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.4E-42 1.2E-46 356.3 40.6 493 92-602 64-577 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-30 1.3E-34 250.6 47.4 380 195-589 8-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.1E-29 3.7E-34 247.4 48.1 381 160-554 8-388 (388)
5 2gw1_A Mitochondrial precursor 100.0 1E-26 3.5E-31 235.7 39.9 452 81-571 6-481 (514)
6 2gw1_A Mitochondrial precursor 100.0 4.6E-27 1.6E-31 238.3 37.1 435 153-602 8-476 (514)
7 4g26_A Pentatricopeptide repea 100.0 3.5E-28 1.2E-32 239.6 24.7 201 138-341 12-222 (501)
8 4g26_A Pentatricopeptide repea 100.0 4.2E-28 1.4E-32 239.0 24.4 184 227-410 29-221 (501)
9 3fp2_A TPR repeat-containing p 100.0 3.3E-25 1.1E-29 225.9 35.8 437 116-571 25-494 (537)
10 3fp2_A TPR repeat-containing p 100.0 1.1E-24 3.8E-29 222.0 39.1 437 81-534 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.6E-24 8.9E-29 214.0 40.4 317 65-393 11-358 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 4.4E-24 1.5E-28 212.4 40.1 392 168-595 9-445 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 5.5E-21 1.9E-25 183.7 39.8 334 223-588 2-353 (359)
14 2xm6_A Protein corresponding t 99.9 1.2E-19 4.1E-24 181.8 49.5 356 150-569 38-433 (490)
15 3ieg_A DNAJ homolog subfamily 99.9 9.5E-21 3.3E-25 182.1 37.5 314 258-602 2-333 (359)
16 2xm6_A Protein corresponding t 99.9 6.6E-19 2.3E-23 176.4 50.3 365 98-498 24-432 (490)
17 2ooe_A Cleavage stimulation fa 99.9 4.1E-19 1.4E-23 179.8 45.1 436 68-568 1-492 (530)
18 3hym_B Cell division cycle pro 99.9 2.5E-20 8.6E-25 176.8 32.3 292 293-592 21-322 (330)
19 2ooe_A Cleavage stimulation fa 99.9 7E-19 2.4E-23 178.1 44.6 430 139-602 2-490 (530)
20 3hym_B Cell division cycle pro 99.9 6.3E-20 2.1E-24 174.1 33.2 293 257-556 20-322 (330)
21 1xi4_A Clathrin heavy chain; a 99.9 9.8E-18 3.4E-22 175.0 51.0 424 113-599 982-1440(1630)
22 1fch_A Peroxisomal targeting s 99.9 1.2E-20 4.2E-25 182.0 25.7 266 331-602 66-357 (368)
23 1xi4_A Clathrin heavy chain; a 99.9 1.2E-16 4.2E-21 166.9 54.3 411 80-553 984-1415(1630)
24 1fch_A Peroxisomal targeting s 99.9 1.4E-19 4.8E-24 174.6 25.4 308 233-566 34-357 (368)
25 4eqf_A PEX5-related protein; a 99.9 1.6E-19 5.5E-24 173.9 25.2 267 330-601 66-353 (365)
26 3cv0_A Peroxisome targeting si 99.8 5.6E-19 1.9E-23 167.3 26.7 262 334-602 26-313 (327)
27 1b89_A Protein (clathrin heavy 99.8 5.9E-19 2E-23 165.3 23.4 284 58-387 15-305 (449)
28 4eqf_A PEX5-related protein; a 99.8 7.6E-19 2.6E-23 169.1 24.6 264 80-353 64-351 (365)
29 4g1t_A Interferon-induced prot 99.8 2.1E-17 7.1E-22 165.2 36.0 202 116-323 51-276 (472)
30 4g1t_A Interferon-induced prot 99.8 3.7E-17 1.3E-21 163.3 36.6 344 61-428 30-401 (472)
31 3mkr_A Coatomer subunit epsilo 99.8 6.5E-18 2.2E-22 155.6 26.5 276 304-598 9-288 (291)
32 3cv0_A Peroxisome targeting si 99.8 2.3E-18 7.9E-23 163.0 24.2 269 56-355 31-312 (327)
33 1b89_A Protein (clathrin heavy 99.8 8.5E-18 2.9E-22 157.4 25.3 221 93-357 15-235 (449)
34 3mkr_A Coatomer subunit epsilo 99.8 2.1E-17 7.1E-22 152.2 26.9 273 267-560 7-286 (291)
35 2pl2_A Hypothetical conserved 99.8 2.2E-17 7.7E-22 145.3 22.7 198 397-601 3-211 (217)
36 3uq3_A Heat shock protein STI1 99.8 1.8E-16 6.2E-21 144.3 24.1 225 331-569 7-237 (258)
37 3e4b_A ALGK; tetratricopeptide 99.8 2.9E-16 1E-20 154.5 27.1 346 87-464 9-388 (452)
38 3uq3_A Heat shock protein STI1 99.8 2.3E-16 7.8E-21 143.6 23.6 224 364-602 5-234 (258)
39 3e4b_A ALGK; tetratricopeptide 99.8 4.2E-16 1.4E-20 153.3 26.9 188 366-569 178-388 (452)
40 3u4t_A TPR repeat-containing p 99.7 1.5E-15 5.2E-20 139.4 25.8 228 370-601 9-247 (272)
41 2pl2_A Hypothetical conserved 99.7 6.2E-16 2.1E-20 136.0 22.0 199 362-566 3-212 (217)
42 2h6f_A Protein farnesyltransfe 99.7 1.6E-15 5.5E-20 144.2 24.6 229 365-601 98-344 (382)
43 2h6f_A Protein farnesyltransfe 99.7 3.6E-15 1.2E-19 141.9 26.6 205 58-272 109-322 (382)
44 3u4t_A TPR repeat-containing p 99.7 3.4E-15 1.2E-19 137.0 25.8 252 331-588 5-268 (272)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 1.3E-15 4.4E-20 140.1 20.2 248 57-317 16-269 (275)
46 2q7f_A YRRB protein; TPR, prot 99.7 3.3E-15 1.1E-19 134.5 21.7 216 363-585 22-237 (243)
47 2ho1_A Type 4 fimbrial biogene 99.7 1.3E-14 4.6E-19 131.3 25.3 204 364-571 37-241 (252)
48 4e6h_A MRNA 3'-END-processing 99.7 3.1E-12 1.1E-16 129.9 44.9 152 61-214 47-222 (679)
49 3spa_A Mtrpol, DNA-directed RN 99.7 1.4E-16 4.7E-21 161.4 12.9 115 224-338 127-245 (1134)
50 4e6h_A MRNA 3'-END-processing 99.7 1.2E-12 4.2E-17 132.8 41.7 433 96-533 47-570 (679)
51 1ouv_A Conserved hypothetical 99.7 1.1E-13 3.9E-18 126.8 31.2 225 328-570 5-253 (273)
52 2q7f_A YRRB protein; TPR, prot 99.7 3.3E-15 1.1E-19 134.5 20.5 199 398-602 22-220 (243)
53 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-16 4.4E-21 161.7 11.5 122 185-306 126-248 (1134)
54 1ouv_A Conserved hypothetical 99.7 1.8E-13 6.3E-18 125.4 31.4 224 80-324 5-252 (273)
55 2ho1_A Type 4 fimbrial biogene 99.7 3.9E-14 1.3E-18 128.2 26.2 200 330-533 38-238 (252)
56 2vq2_A PILW, putative fimbrial 99.7 3.9E-14 1.3E-18 125.7 24.6 205 363-571 7-214 (225)
57 2vq2_A PILW, putative fimbrial 99.7 6.1E-14 2.1E-18 124.4 25.1 203 80-288 7-211 (225)
58 3vtx_A MAMA; tetratricopeptide 99.6 3.7E-14 1.3E-18 121.4 22.1 168 398-569 4-171 (184)
59 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.5E-14 5E-19 133.0 19.7 223 92-323 16-244 (275)
60 2ond_A Cleavage stimulation fa 99.6 2.5E-13 8.6E-18 126.7 27.4 218 63-288 33-270 (308)
61 4a1s_A PINS, partner of inscut 99.6 4.5E-15 1.5E-19 145.3 15.4 118 296-414 50-181 (411)
62 4abn_A Tetratricopeptide repea 99.6 3.2E-14 1.1E-18 140.9 21.4 213 380-600 84-317 (474)
63 3sf4_A G-protein-signaling mod 99.6 1.3E-14 4.4E-19 141.8 18.3 302 258-591 8-363 (406)
64 3sf4_A G-protein-signaling mod 99.6 1.4E-14 4.6E-19 141.6 17.7 270 332-602 12-334 (406)
65 3vtx_A MAMA; tetratricopeptide 99.6 2.6E-13 8.8E-18 116.0 22.4 163 434-601 5-167 (184)
66 3ro2_A PINS homolog, G-protein 99.6 1.8E-14 6.2E-19 136.7 16.2 274 297-602 8-330 (338)
67 4a1s_A PINS, partner of inscut 99.6 3.5E-14 1.2E-18 138.9 17.3 279 258-567 47-371 (411)
68 2ond_A Cleavage stimulation fa 99.6 1.5E-12 5.3E-17 121.3 26.9 238 330-571 9-273 (308)
69 3ulq_A Response regulator aspa 99.6 4.1E-13 1.4E-17 129.7 23.1 230 370-602 109-366 (383)
70 3ro2_A PINS homolog, G-protein 99.6 5.8E-14 2E-18 133.1 16.8 202 50-251 9-250 (338)
71 4abn_A Tetratricopeptide repea 99.6 1.7E-13 5.9E-18 135.6 19.6 216 96-320 83-318 (474)
72 4gyw_A UDP-N-acetylglucosamine 99.5 3.3E-13 1.1E-17 138.7 20.5 162 435-601 10-171 (723)
73 3nf1_A KLC 1, kinesin light ch 99.5 4.4E-14 1.5E-18 132.4 10.9 242 330-601 28-304 (311)
74 3as5_A MAMA; tetratricopeptide 99.5 1.5E-12 5.2E-17 111.3 19.2 167 400-570 9-175 (186)
75 3ulq_A Response regulator aspa 99.5 2.6E-12 9E-17 124.1 22.8 235 265-532 109-367 (383)
76 4i17_A Hypothetical protein; T 99.5 3.8E-12 1.3E-16 113.0 21.9 208 363-584 6-223 (228)
77 1hz4_A MALT regulatory protein 99.5 1.8E-11 6.1E-16 117.8 26.4 235 50-286 18-280 (373)
78 3nf1_A KLC 1, kinesin light ch 99.5 2.9E-13 9.9E-18 126.7 13.4 248 292-568 25-307 (311)
79 3q15_A PSP28, response regulat 99.5 7E-12 2.4E-16 120.8 22.9 229 370-602 107-363 (378)
80 4gyw_A UDP-N-acetylglucosamine 99.5 3.7E-12 1.3E-16 131.0 20.8 166 398-567 8-173 (723)
81 4i17_A Hypothetical protein; T 99.4 8.1E-12 2.8E-16 110.8 19.9 194 397-602 5-207 (228)
82 3as5_A MAMA; tetratricopeptide 99.4 1.1E-11 3.8E-16 105.9 20.1 163 435-602 9-171 (186)
83 1hz4_A MALT regulatory protein 99.4 8.6E-11 3E-15 113.0 27.2 161 265-425 20-200 (373)
84 3q15_A PSP28, response regulat 99.4 5.7E-11 1.9E-15 114.4 23.9 234 265-532 107-364 (378)
85 3edt_B KLC 2, kinesin light ch 99.4 5.4E-12 1.8E-16 116.2 13.9 228 375-602 12-279 (283)
86 1qqe_A Vesicular transport pro 99.4 6E-11 2.1E-15 109.4 20.2 175 344-533 32-228 (292)
87 2r5s_A Uncharacterized protein 99.3 2.2E-11 7.5E-16 102.9 13.9 163 436-602 8-171 (176)
88 2pzi_A Probable serine/threoni 99.3 3E-11 1E-15 125.1 17.2 171 410-587 402-580 (681)
89 4ga2_A E3 SUMO-protein ligase 99.3 7.6E-12 2.6E-16 102.3 10.0 145 441-590 4-149 (150)
90 3edt_B KLC 2, kinesin light ch 99.3 2.2E-11 7.7E-16 112.0 13.9 227 340-567 12-280 (283)
91 3qky_A Outer membrane assembly 99.3 1.3E-10 4.3E-15 105.5 18.6 60 543-602 152-222 (261)
92 3qky_A Outer membrane assembly 99.3 1.6E-10 5.4E-15 104.9 19.1 192 402-596 18-253 (261)
93 3qou_A Protein YBBN; thioredox 99.3 7E-11 2.4E-15 108.5 16.8 166 433-602 116-282 (287)
94 2fo7_A Synthetic consensus TPR 99.3 1.9E-10 6.5E-15 92.2 16.9 125 473-601 5-129 (136)
95 3urz_A Uncharacterized protein 99.3 8.8E-11 3E-15 102.1 15.9 176 399-582 4-197 (208)
96 3dra_A Protein farnesyltransfe 99.3 2.3E-09 7.9E-14 97.6 24.4 219 344-567 48-286 (306)
97 3dra_A Protein farnesyltransfe 99.3 9.5E-09 3.2E-13 93.6 28.3 232 60-299 47-298 (306)
98 3mv2_B Coatomer subunit epsilo 99.3 5.5E-09 1.9E-13 93.9 26.0 242 56-324 23-283 (310)
99 2uy1_A Cleavage stimulation fa 99.3 2.3E-08 7.8E-13 98.7 32.9 378 93-532 6-412 (493)
100 2pzi_A Probable serine/threoni 99.2 1E-10 3.5E-15 121.2 16.1 185 92-285 402-602 (681)
101 3urz_A Uncharacterized protein 99.2 1.8E-10 6.2E-15 100.2 15.2 159 52-215 10-186 (208)
102 2fo7_A Synthetic consensus TPR 99.2 7.2E-10 2.5E-14 88.7 17.3 132 436-570 3-134 (136)
103 4ga2_A E3 SUMO-protein ligase 99.2 1E-10 3.6E-15 95.5 11.7 145 406-554 4-149 (150)
104 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.1E-09 3.7E-14 96.6 19.1 183 399-601 4-210 (225)
105 3mv2_B Coatomer subunit epsilo 99.2 4.4E-09 1.5E-13 94.5 23.0 144 418-566 85-238 (310)
106 1qqe_A Vesicular transport pro 99.2 7.6E-10 2.6E-14 102.0 18.5 209 96-321 32-267 (292)
107 2vsy_A XCC0866; transferase, g 99.2 4.1E-10 1.4E-14 114.8 17.7 164 412-581 2-168 (568)
108 2uy1_A Cleavage stimulation fa 99.2 3.2E-08 1.1E-12 97.7 30.3 381 128-567 6-412 (493)
109 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.2E-09 1.4E-13 92.8 21.0 188 364-571 4-216 (225)
110 2r5s_A Uncharacterized protein 99.2 3.9E-10 1.3E-14 95.1 13.5 158 53-214 13-172 (176)
111 2vsy_A XCC0866; transferase, g 99.2 1E-09 3.6E-14 111.8 18.7 154 59-216 2-158 (568)
112 3qou_A Protein YBBN; thioredox 99.2 2.2E-09 7.6E-14 98.4 18.9 179 61-251 101-282 (287)
113 3rjv_A Putative SEL1 repeat pr 99.1 6.2E-09 2.1E-13 90.6 20.0 177 63-254 3-198 (212)
114 4gco_A Protein STI-1; structur 99.1 1.9E-09 6.6E-14 84.7 14.9 112 469-584 13-124 (126)
115 3gyz_A Chaperone protein IPGC; 99.1 1.7E-10 5.8E-15 93.5 7.6 101 468-570 35-135 (151)
116 3rjv_A Putative SEL1 repeat pr 99.1 9.3E-09 3.2E-13 89.5 19.1 174 99-289 4-198 (212)
117 2ifu_A Gamma-SNAP; membrane fu 99.1 3.3E-09 1.1E-13 98.5 16.6 174 342-531 29-222 (307)
118 2ifu_A Gamma-SNAP; membrane fu 99.1 1.6E-09 5.4E-14 100.7 13.8 228 341-597 3-254 (307)
119 1a17_A Serine/threonine protei 99.0 5.6E-09 1.9E-13 87.0 15.0 125 472-600 16-142 (166)
120 2vgx_A Chaperone SYCD; alterna 99.0 1E-09 3.5E-14 89.2 9.7 114 455-571 8-121 (148)
121 3gyz_A Chaperone protein IPGC; 99.0 2.1E-09 7E-14 87.1 11.2 103 434-540 36-138 (151)
122 3q7a_A Farnesyltransferase alp 99.0 1.9E-07 6.5E-12 85.8 25.3 175 58-240 66-258 (349)
123 2vgx_A Chaperone SYCD; alterna 99.0 2E-09 6.7E-14 87.5 10.8 111 421-534 9-119 (148)
124 3u3w_A Transcriptional activat 99.0 1.1E-07 3.8E-12 87.5 24.0 161 441-601 82-263 (293)
125 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.4E-08 4.7E-13 88.7 16.7 127 471-602 8-148 (213)
126 3q7a_A Farnesyltransferase alp 99.0 9.4E-08 3.2E-12 87.8 22.2 224 340-568 65-331 (349)
127 1hh8_A P67PHOX, NCF-2, neutrop 99.0 3E-08 1E-12 86.5 18.4 126 402-533 9-150 (213)
128 4gco_A Protein STI-1; structur 99.0 1.7E-08 6E-13 79.2 15.1 111 435-548 14-124 (126)
129 4f3v_A ESX-1 secretion system 99.0 1.1E-08 3.8E-13 90.6 15.0 187 58-253 18-237 (282)
130 2lni_A Stress-induced-phosphop 99.0 1.3E-08 4.4E-13 81.1 14.0 121 466-590 13-133 (133)
131 1p5q_A FKBP52, FK506-binding p 99.0 1E-08 3.5E-13 96.2 15.3 129 470-601 148-291 (336)
132 2qfc_A PLCR protein; TPR, HTH, 98.9 1.8E-07 6.2E-12 86.1 22.8 165 437-601 78-263 (293)
133 1na0_A Designed protein CTPR3; 98.9 3.5E-08 1.2E-12 77.4 15.5 116 469-588 9-124 (125)
134 2vyi_A SGTA protein; chaperone 98.9 2.3E-08 7.9E-13 79.2 14.3 120 468-591 11-130 (131)
135 1a17_A Serine/threonine protei 98.9 5.3E-08 1.8E-12 81.0 16.7 129 435-566 14-144 (166)
136 2c2l_A CHIP, carboxy terminus 98.9 5.2E-09 1.8E-13 95.6 11.0 95 366-462 6-100 (281)
137 2e2e_A Formate-dependent nitri 98.9 2.2E-08 7.7E-13 84.4 14.0 124 445-571 21-147 (177)
138 2xcb_A PCRH, regulatory protei 98.9 7.6E-09 2.6E-13 83.5 10.5 103 467-571 16-118 (142)
139 2e2e_A Formate-dependent nitri 98.9 9.2E-09 3.1E-13 86.8 11.3 119 480-602 21-142 (177)
140 3gw4_A Uncharacterized protein 98.9 1.3E-08 4.4E-13 88.1 12.5 161 410-571 3-179 (203)
141 3upv_A Heat shock protein STI1 98.9 3.5E-08 1.2E-12 77.7 13.6 114 469-584 4-121 (126)
142 4f3v_A ESX-1 secretion system 98.9 9.8E-08 3.4E-12 84.6 17.4 189 93-288 18-237 (282)
143 2xcb_A PCRH, regulatory protei 98.9 8.7E-09 3E-13 83.2 10.0 99 434-534 18-116 (142)
144 3u3w_A Transcriptional activat 98.9 4E-07 1.4E-11 83.8 22.2 163 405-567 81-265 (293)
145 2fbn_A 70 kDa peptidylprolyl i 98.9 3.8E-09 1.3E-13 91.0 7.7 123 470-595 39-176 (198)
146 1na0_A Designed protein CTPR3; 98.9 1.1E-07 3.7E-12 74.5 15.6 116 434-552 9-124 (125)
147 3dss_A Geranylgeranyl transfer 98.9 2.1E-06 7.1E-11 78.6 25.5 237 340-584 40-318 (331)
148 3sz7_A HSC70 cochaperone (SGT) 98.9 4.8E-08 1.7E-12 81.0 13.7 97 435-533 12-108 (164)
149 2vyi_A SGTA protein; chaperone 98.8 1.1E-07 3.6E-12 75.3 15.0 119 434-555 12-130 (131)
150 1elw_A TPR1-domain of HOP; HOP 98.8 1.9E-07 6.4E-12 72.2 15.6 112 469-584 4-115 (118)
151 2lni_A Stress-induced-phosphop 98.8 8.2E-08 2.8E-12 76.3 13.6 118 433-553 15-132 (133)
152 3dss_A Geranylgeranyl transfer 98.8 2.8E-06 9.5E-11 77.8 24.9 168 62-237 46-240 (331)
153 3upv_A Heat shock protein STI1 98.8 6.5E-08 2.2E-12 76.1 12.6 97 503-602 3-99 (126)
154 2qfc_A PLCR protein; TPR, HTH, 98.8 5.8E-07 2E-11 82.7 20.5 166 402-567 78-265 (293)
155 1p5q_A FKBP52, FK506-binding p 98.8 1.3E-07 4.6E-12 88.6 16.0 130 435-566 148-292 (336)
156 2c2l_A CHIP, carboxy terminus 98.8 4.6E-08 1.6E-12 89.3 12.4 97 117-215 5-101 (281)
157 4gcn_A Protein STI-1; structur 98.8 6.6E-08 2.2E-12 76.0 11.1 109 469-581 8-122 (127)
158 3gw4_A Uncharacterized protein 98.8 7.2E-08 2.5E-12 83.3 12.5 157 58-215 4-176 (203)
159 1hxi_A PEX5, peroxisome target 98.8 7.4E-08 2.5E-12 74.9 11.2 96 472-569 20-115 (121)
160 3q49_B STIP1 homology and U bo 98.8 1.4E-07 4.7E-12 75.5 13.1 101 466-568 6-106 (137)
161 4gcn_A Protein STI-1; structur 98.7 1.8E-07 6.2E-12 73.5 13.2 108 435-545 9-122 (127)
162 3sz7_A HSC70 cochaperone (SGT) 98.7 1.4E-07 4.9E-12 78.2 12.5 119 467-587 9-127 (164)
163 2dba_A Smooth muscle cell asso 98.7 5E-07 1.7E-11 73.2 15.5 116 467-586 26-144 (148)
164 2fbn_A 70 kDa peptidylprolyl i 98.7 2.3E-08 7.7E-13 86.1 7.7 130 435-567 39-185 (198)
165 3q49_B STIP1 homology and U bo 98.7 2.5E-07 8.7E-12 73.9 13.4 98 502-602 7-104 (137)
166 2kck_A TPR repeat; tetratricop 98.7 2E-07 6.9E-12 71.3 12.3 102 468-571 5-109 (112)
167 1elw_A TPR1-domain of HOP; HOP 98.7 7.3E-07 2.5E-11 68.8 15.5 112 434-548 4-115 (118)
168 1hxi_A PEX5, peroxisome target 98.7 1.9E-07 6.6E-12 72.5 11.1 92 507-601 20-111 (121)
169 2kck_A TPR repeat; tetratricop 98.6 3.3E-07 1.1E-11 70.1 11.5 99 503-602 5-104 (112)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 4.5E-07 1.5E-11 89.0 14.9 123 434-559 268-405 (457)
171 1elr_A TPR2A-domain of HOP; HO 98.6 3.7E-07 1.3E-11 72.1 11.8 112 470-585 5-122 (131)
172 2xev_A YBGF; tetratricopeptide 98.6 1.1E-06 3.7E-11 69.3 14.1 96 473-570 6-107 (129)
173 1wao_1 Serine/threonine protei 98.6 1.5E-07 5E-12 92.9 10.1 119 477-599 14-134 (477)
174 1ihg_A Cyclophilin 40; ppiase 98.6 3.9E-07 1.3E-11 86.4 12.5 92 503-597 272-363 (370)
175 3rkv_A Putative peptidylprolyl 98.6 4.5E-07 1.5E-11 74.9 11.2 80 504-586 63-143 (162)
176 2dba_A Smooth muscle cell asso 98.5 2.8E-06 9.5E-11 68.7 15.3 114 433-549 27-143 (148)
177 2xev_A YBGF; tetratricopeptide 98.5 7.8E-07 2.7E-11 70.1 11.5 93 507-602 5-103 (129)
178 4b4t_Q 26S proteasome regulato 98.5 2E-06 6.7E-11 84.3 16.7 95 506-600 137-241 (434)
179 2hr2_A Hypothetical protein; a 98.5 9.6E-07 3.3E-11 70.4 11.5 93 507-602 14-129 (159)
180 1dce_A Protein (RAB geranylger 98.5 4.3E-06 1.5E-10 83.9 18.8 174 414-593 44-244 (567)
181 1elr_A TPR2A-domain of HOP; HO 98.5 1.1E-06 3.6E-11 69.4 11.7 112 435-549 5-122 (131)
182 3ro3_A PINS homolog, G-protein 98.5 4.4E-07 1.5E-11 74.9 9.5 95 506-600 51-154 (164)
183 3k9i_A BH0479 protein; putativ 98.5 2.1E-07 7E-12 72.0 7.0 88 482-571 3-93 (117)
184 3rkv_A Putative peptidylprolyl 98.5 9.7E-07 3.3E-11 72.9 10.5 97 504-602 11-124 (162)
185 2if4_A ATFKBP42; FKBP-like, al 98.5 4.4E-07 1.5E-11 85.1 9.0 146 435-602 180-326 (338)
186 2l6j_A TPR repeat-containing p 98.5 2.3E-07 7.9E-12 70.9 5.9 97 503-602 3-105 (111)
187 1wao_1 Serine/threonine protei 98.4 9.2E-07 3.1E-11 87.2 10.8 118 55-175 15-134 (477)
188 1ihg_A Cyclophilin 40; ppiase 98.4 2.9E-06 1E-10 80.4 13.8 92 467-560 271-362 (370)
189 4b4t_Q 26S proteasome regulato 98.4 2.1E-05 7.1E-10 76.9 20.2 197 336-532 11-244 (434)
190 3k9i_A BH0479 protein; putativ 98.4 5.4E-07 1.9E-11 69.6 7.0 88 446-534 2-91 (117)
191 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.7E-06 1.3E-10 82.5 14.6 133 398-532 267-414 (457)
192 2hr2_A Hypothetical protein; a 98.4 4.7E-06 1.6E-10 66.5 11.9 97 471-568 13-131 (159)
193 1dce_A Protein (RAB geranylger 98.4 1.1E-05 3.8E-10 80.9 17.5 175 60-242 43-244 (567)
194 2kat_A Uncharacterized protein 98.4 1.8E-06 6.2E-11 66.3 9.2 80 487-568 3-82 (115)
195 3ro3_A PINS homolog, G-protein 98.3 2.8E-06 9.7E-11 69.9 10.6 132 436-567 11-157 (164)
196 2if4_A ATFKBP42; FKBP-like, al 98.3 2E-06 6.8E-11 80.6 9.0 153 398-571 178-331 (338)
197 1na3_A Designed protein CTPR2; 98.2 1.4E-05 4.6E-10 58.1 10.2 82 504-588 9-90 (91)
198 2kat_A Uncharacterized protein 98.2 8.8E-06 3E-10 62.4 9.1 79 521-602 2-80 (115)
199 1klx_A Cysteine rich protein B 98.1 0.0001 3.5E-09 58.5 14.6 110 449-569 10-127 (138)
200 3n71_A Histone lysine methyltr 98.1 3.2E-05 1.1E-09 75.5 13.9 127 442-569 317-465 (490)
201 1zu2_A Mitochondrial import re 98.1 8.3E-06 2.8E-10 64.9 7.8 67 448-516 16-92 (158)
202 3ma5_A Tetratricopeptide repea 98.1 9.6E-06 3.3E-10 60.2 7.4 64 503-567 6-69 (100)
203 2l6j_A TPR repeat-containing p 98.1 1.4E-05 4.8E-10 60.7 8.5 93 468-562 3-101 (111)
204 1na3_A Designed protein CTPR2; 98.1 3.5E-05 1.2E-09 55.8 10.3 84 468-553 8-91 (91)
205 1klx_A Cysteine rich protein B 98.0 0.00011 3.6E-09 58.4 13.1 111 60-181 9-127 (138)
206 1zu2_A Mitochondrial import re 98.0 1.6E-05 5.4E-10 63.3 7.8 89 480-570 13-122 (158)
207 3n71_A Histone lysine methyltr 98.0 2.5E-05 8.4E-10 76.4 10.1 128 406-533 316-464 (490)
208 3ma5_A Tetratricopeptide repea 97.9 3.9E-05 1.3E-09 56.9 8.5 65 536-602 4-68 (100)
209 2kc7_A BFR218_protein; tetratr 97.8 0.0001 3.4E-09 54.5 9.1 60 511-571 7-67 (99)
210 3ly7_A Transcriptional activat 97.6 0.0015 5.2E-08 59.9 14.0 144 77-228 190-347 (372)
211 3qww_A SET and MYND domain-con 97.5 0.00019 6.3E-09 69.0 8.2 87 481-567 310-410 (433)
212 2kc7_A BFR218_protein; tetratr 97.5 0.00013 4.6E-09 53.8 5.3 59 475-534 6-65 (99)
213 3ly7_A Transcriptional activat 97.5 0.0025 8.4E-08 58.6 14.1 143 113-263 191-347 (372)
214 3bee_A Putative YFRE protein; 97.4 0.0032 1.1E-07 45.3 11.5 67 503-570 5-74 (93)
215 3bee_A Putative YFRE protein; 97.4 0.00087 3E-08 48.4 8.3 65 536-602 3-70 (93)
216 3qwp_A SET and MYND domain-con 97.4 0.00079 2.7E-08 64.7 10.4 97 471-567 289-399 (429)
217 1pc2_A Mitochondria fission pr 97.3 0.00076 2.6E-08 53.0 7.8 86 484-571 13-103 (152)
218 1pc2_A Mitochondria fission pr 97.3 0.0023 7.8E-08 50.3 10.0 86 448-534 12-101 (152)
219 3u64_A Protein TP_0956; tetrat 97.2 0.1 3.5E-06 45.9 20.3 85 167-256 179-272 (301)
220 3qwp_A SET and MYND domain-con 97.0 0.0038 1.3E-07 60.0 10.8 98 436-533 289-400 (429)
221 3qww_A SET and MYND domain-con 97.0 0.0036 1.2E-07 60.1 10.6 61 261-321 342-409 (433)
222 1wy6_A Hypothetical protein ST 97.0 0.068 2.3E-06 40.2 15.0 85 481-571 73-157 (172)
223 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0037 1.3E-07 46.3 7.8 76 503-580 4-85 (104)
224 3lvg_A Clathrin heavy chain 1; 96.9 6.3E-07 2.2E-11 83.3 -15.5 265 115-419 53-324 (624)
225 2v5f_A Prolyl 4-hydroxylase su 96.9 0.014 4.9E-07 43.0 10.8 76 466-542 2-83 (104)
226 1nzn_A CGI-135 protein, fissio 96.7 0.016 5.4E-07 43.7 9.8 87 483-571 15-106 (126)
227 3lvg_A Clathrin heavy chain 1; 96.6 2.3E-05 7.7E-10 73.2 -7.4 206 81-307 54-276 (624)
228 3mkq_A Coatomer beta'-subunit; 96.6 0.032 1.1E-06 59.3 15.4 154 373-565 608-762 (814)
229 3u64_A Protein TP_0956; tetrat 96.6 0.029 9.8E-07 49.4 12.0 87 485-571 179-272 (301)
230 4ady_A RPN2, 26S proteasome re 96.6 0.94 3.2E-05 47.4 36.0 263 269-542 384-664 (963)
231 1nzn_A CGI-135 protein, fissio 96.5 0.01 3.4E-07 44.8 7.7 84 517-602 14-101 (126)
232 3mkq_A Coatomer beta'-subunit; 96.5 0.089 3.1E-06 55.8 18.3 193 337-594 607-802 (814)
233 3mkq_B Coatomer subunit alpha; 96.4 0.082 2.8E-06 42.7 12.5 103 442-565 13-115 (177)
234 4h7y_A Dual specificity protei 96.3 0.073 2.5E-06 41.1 11.1 54 517-571 73-126 (161)
235 3mkq_B Coatomer subunit alpha; 96.3 0.17 5.9E-06 40.8 13.9 130 406-565 12-141 (177)
236 4h7y_A Dual specificity protei 96.3 0.091 3.1E-06 40.6 11.4 102 78-181 10-124 (161)
237 3ffl_A Anaphase-promoting comp 96.1 0.023 8E-07 44.9 7.7 30 573-602 120-149 (167)
238 4gns_B Protein CSD3, chitin bi 95.6 0.062 2.1E-06 54.9 10.4 51 514-565 347-397 (754)
239 1wy6_A Hypothetical protein ST 95.4 0.64 2.2E-05 35.2 14.7 57 267-324 99-155 (172)
240 1y8m_A FIS1; mitochondria, unk 95.0 0.58 2E-05 35.9 11.8 71 501-571 36-109 (144)
241 3o48_A Mitochondria fission 1 95.0 0.22 7.6E-06 37.6 9.4 73 499-571 35-110 (134)
242 1y8m_A FIS1; mitochondria, unk 95.0 0.43 1.5E-05 36.6 10.9 66 536-602 36-104 (144)
243 4ady_A RPN2, 26S proteasome re 94.7 4.9 0.00017 42.2 38.5 27 226-252 232-258 (963)
244 3o48_A Mitochondria fission 1 94.6 0.22 7.4E-06 37.7 8.4 67 535-602 36-105 (134)
245 4b4t_P 26S proteasome regulato 94.1 4.3 0.00015 39.0 19.3 50 308-357 30-84 (445)
246 4gns_B Protein CSD3, chitin bi 93.9 0.43 1.5E-05 48.8 11.7 130 118-251 250-398 (754)
247 4b4t_P 26S proteasome regulato 93.4 5.5 0.00019 38.3 18.0 95 263-357 141-246 (445)
248 2ff4_A Probable regulatory pro 93.1 0.73 2.5E-05 43.5 11.3 77 507-585 174-255 (388)
249 3txn_A 26S proteasome regulato 92.2 7.4 0.00025 36.4 19.5 245 330-578 20-292 (394)
250 3ffl_A Anaphase-promoting comp 92.2 0.92 3.1E-05 35.9 8.7 21 157-177 128-148 (167)
251 2ff4_A Probable regulatory pro 91.7 1.2 4.1E-05 42.0 10.9 73 472-545 174-251 (388)
252 4fhn_B Nucleoporin NUP120; pro 90.8 8.6 0.00029 42.3 17.8 193 368-567 816-1049(1139)
253 4fhn_B Nucleoporin NUP120; pro 90.6 5.7 0.00019 43.7 16.2 190 87-286 818-1048(1139)
254 2wpv_A GET4, UPF0363 protein Y 90.1 10 0.00035 34.1 18.7 26 328-353 133-158 (312)
255 2wpv_A GET4, UPF0363 protein Y 88.0 15 0.0005 33.0 20.9 81 467-566 132-215 (312)
256 1v54_E Cytochrome C oxidase po 87.8 5.8 0.0002 28.2 9.2 63 414-477 25-87 (109)
257 1qsa_A Protein (soluble lytic 85.6 32 0.0011 34.6 34.5 116 378-497 228-347 (618)
258 1zbp_A Hypothetical protein VP 84.7 4.8 0.00017 34.9 8.7 116 477-601 5-126 (273)
259 1qsa_A Protein (soluble lytic 84.0 37 0.0013 34.0 36.1 403 49-493 9-437 (618)
260 3lpz_A GET4 (YOR164C homolog); 83.8 25 0.00085 31.8 22.2 81 467-566 134-214 (336)
261 3esl_A Checkpoint serine/threo 82.6 8.2 0.00028 31.8 8.8 59 517-576 92-151 (202)
262 2p58_C Putative type III secre 82.5 11 0.00037 26.7 8.3 77 96-181 22-99 (116)
263 2y69_E Cytochrome C oxidase su 81.5 15 0.00052 27.8 9.9 62 415-477 69-130 (152)
264 1zbp_A Hypothetical protein VP 81.3 26 0.0009 30.4 14.5 116 89-215 5-129 (273)
265 3lpz_A GET4 (YOR164C homolog); 81.3 31 0.0011 31.2 21.4 26 327-352 134-159 (336)
266 2uwj_G Type III export protein 80.8 10 0.00036 26.7 7.4 77 96-181 21-98 (115)
267 1v54_E Cytochrome C oxidase po 80.8 13 0.00044 26.5 9.8 62 167-232 26-87 (109)
268 4b4t_R RPN7, 26S proteasome re 78.2 24 0.00083 33.6 12.2 63 153-215 133-197 (429)
269 4b4t_R RPN7, 26S proteasome re 78.0 18 0.00063 34.4 11.3 99 365-463 132-237 (429)
270 2uwj_G Type III export protein 75.6 19 0.00064 25.5 7.5 77 166-253 21-97 (115)
271 4a1g_A Mitotic checkpoint seri 75.4 18 0.0006 28.3 8.3 55 521-576 82-137 (152)
272 2y69_E Cytochrome C oxidase su 75.3 24 0.00083 26.7 9.8 60 169-232 71-130 (152)
273 2p58_C Putative type III secre 75.1 19 0.00067 25.5 8.4 77 166-253 22-98 (116)
274 1bpo_A Protein (clathrin); cla 72.2 50 0.0017 31.3 11.8 112 447-563 342-453 (494)
275 3esl_A Checkpoint serine/threo 70.5 44 0.0015 27.5 11.5 58 482-539 92-150 (202)
276 2wvi_A Mitotic checkpoint seri 68.0 31 0.0011 27.4 8.3 75 502-580 61-136 (164)
277 4b4t_S RPN3, 26S proteasome re 66.8 50 0.0017 32.0 11.0 65 81-145 231-299 (523)
278 3txn_A 26S proteasome regulato 60.0 1.1E+02 0.0038 28.5 26.0 93 369-461 104-208 (394)
279 2ijq_A Hypothetical protein; s 59.0 29 0.001 27.4 6.6 61 49-109 35-103 (161)
280 4b4t_S RPN3, 26S proteasome re 56.2 1.3E+02 0.0043 29.3 11.7 65 151-215 231-299 (523)
281 4aez_C MAD3, mitotic spindle c 52.7 23 0.00078 29.7 5.3 55 521-576 131-186 (223)
282 2r9g_A AAA ATPase, central reg 52.1 97 0.0033 25.4 9.7 52 43-95 10-62 (204)
283 2d2s_A Exocyst complex compone 51.2 66 0.0023 27.4 8.2 90 474-566 23-118 (235)
284 3eiq_C Programmed cell death p 51.0 1.5E+02 0.0051 27.2 13.5 25 227-251 57-81 (358)
285 3bge_A Predicted ATPase; struc 47.4 1.1E+02 0.0038 25.0 8.2 48 44-91 4-52 (201)
286 2ynq_A ESSB; membrane protein, 47.3 70 0.0024 25.0 6.8 19 547-565 81-99 (161)
287 4a1g_A Mitotic checkpoint seri 46.2 1E+02 0.0035 24.0 11.1 55 486-540 82-137 (152)
288 3ltm_A Alpha-REP4; protein eng 45.9 1.2E+02 0.0042 24.8 20.5 17 80-96 32-48 (211)
289 3eiq_C Programmed cell death p 45.6 1.8E+02 0.0062 26.6 11.5 73 472-545 220-294 (358)
290 3ctd_A Putative ATPase, AAA fa 44.5 1.3E+02 0.0046 24.8 9.1 39 43-81 31-70 (213)
291 4ets_A Ferric uptake regulatio 44.1 56 0.0019 25.8 6.3 49 84-132 35-85 (162)
292 1bpo_A Protein (clathrin); cla 43.6 1.8E+02 0.0063 27.6 10.2 83 95-181 343-425 (494)
293 2ijq_A Hypothetical protein; s 43.1 1.2E+02 0.0041 23.9 8.4 53 480-532 43-103 (161)
294 2wvi_A Mitotic checkpoint seri 40.7 1.3E+02 0.0046 23.7 11.2 56 486-541 77-133 (164)
295 4aez_C MAD3, mitotic spindle c 40.1 1.7E+02 0.0057 24.6 9.0 55 485-539 130-185 (223)
296 2d2s_A Exocyst complex compone 39.6 1.8E+02 0.006 24.8 9.1 21 336-356 25-45 (235)
297 2qx5_A Nucleoporin NIC96; mRNA 38.8 3.2E+02 0.011 27.6 20.6 16 586-601 549-564 (661)
298 1wdy_A 2-5A-dependent ribonucl 38.7 1.6E+02 0.0055 25.3 9.4 10 481-490 228-237 (285)
299 2nsz_A Programmed cell death p 38.5 1.2E+02 0.0042 22.7 7.9 23 438-460 11-33 (129)
300 2crb_A Nuclear receptor bindin 37.6 41 0.0014 23.3 3.7 23 578-600 18-40 (97)
301 3kae_A CDC27, possible protein 36.5 1.6E+02 0.0055 23.4 10.8 53 548-600 71-139 (242)
302 4gq2_M Nucleoporin NUP120; bet 35.7 1.5E+02 0.0052 31.7 9.8 48 540-588 898-949 (950)
303 2ion_A PDCD4, programmed cell 35.6 1.1E+02 0.0037 23.9 6.6 25 437-461 12-36 (152)
304 4gq2_M Nucleoporin NUP120; bet 35.0 2.6E+02 0.0091 29.9 11.5 48 506-553 899-950 (950)
305 3e3v_A Regulatory protein RECX 34.8 1.8E+02 0.006 23.4 10.2 28 452-479 51-78 (177)
306 2b7e_A PRE-mRNA processing pro 34.3 24 0.0008 22.2 2.0 29 63-91 3-31 (59)
307 2fe3_A Peroxide operon regulat 34.2 1.5E+02 0.005 22.8 7.2 48 84-131 24-71 (145)
308 3eyy_A Putative iron uptake re 34.1 1.4E+02 0.0048 22.9 7.0 47 84-131 21-67 (145)
309 3eu9_A Huntingtin-interacting 34.0 1.4E+02 0.0048 24.8 8.0 6 482-487 220-225 (240)
310 3ltj_A Alpharep-4; protein eng 33.6 1.9E+02 0.0064 23.3 21.6 142 79-239 26-167 (201)
311 2cos_A Serine/threonine protei 32.2 73 0.0025 19.4 3.7 36 560-601 11-48 (54)
312 1ya0_A SMG-7 transcript varian 31.3 3.1E+02 0.01 26.6 10.3 78 437-516 155-232 (497)
313 3bu8_A Telomeric repeat-bindin 30.8 2.2E+02 0.0075 23.7 7.5 49 62-110 88-143 (235)
314 3ltm_A Alpha-REP4; protein eng 30.4 2.2E+02 0.0075 23.1 21.5 170 114-306 31-200 (211)
315 2xig_A Ferric uptake regulatio 30.2 1.9E+02 0.0065 22.3 7.9 51 82-132 27-77 (150)
316 3ubw_A 14-3-3E, 14-3-3 protein 28.2 2.9E+02 0.0099 23.8 11.3 47 521-567 173-227 (261)
317 2zu6_B Programmed cell death p 28.2 3.2E+02 0.011 24.3 9.9 25 227-251 6-30 (307)
318 4ets_A Ferric uptake regulatio 28.0 1.8E+02 0.0063 22.8 6.9 25 229-253 37-61 (162)
319 3ltj_A Alpharep-4; protein eng 28.0 2.4E+02 0.0081 22.7 21.0 153 114-286 26-178 (201)
320 1wdy_A 2-5A-dependent ribonucl 27.1 2.9E+02 0.01 23.5 11.7 12 411-422 228-239 (285)
321 1ya0_A SMG-7 transcript varian 27.1 2.3E+02 0.008 27.4 8.6 72 55-128 161-232 (497)
322 3hra_A Ankyrin repeat family p 26.1 2.5E+02 0.0086 22.4 8.1 12 236-247 14-25 (201)
323 3t8k_A Uncharacterized protein 25.5 2.6E+02 0.0089 22.4 8.8 21 196-216 45-65 (186)
324 3bu8_A Telomeric repeat-bindin 25.3 2.9E+02 0.01 22.9 7.9 23 476-498 121-143 (235)
325 2f6m_A Suppressor protein STP2 23.5 1.5E+02 0.005 19.1 4.3 42 507-549 5-46 (65)
326 3jxi_A Vanilloid receptor-rela 23.3 78 0.0027 27.1 4.4 23 304-326 12-34 (260)
327 3pvs_A Replication-associated 23.2 4.9E+02 0.017 24.7 13.6 152 344-497 166-358 (447)
328 2o03_A Probable zinc uptake re 22.9 1.7E+02 0.0058 21.9 5.6 48 85-132 14-61 (131)
329 3hra_A Ankyrin repeat family p 22.7 2.9E+02 0.0099 22.0 8.7 12 306-317 14-25 (201)
330 2pm7_A Protein WEB1, protein t 22.7 4.7E+02 0.016 24.4 11.8 26 577-602 338-363 (399)
331 2xig_A Ferric uptake regulatio 22.5 2.7E+02 0.0091 21.5 7.9 34 518-551 40-73 (150)
332 2br9_A 14-3-3E, 14-3-3 protein 21.8 3.7E+02 0.013 22.8 9.7 47 521-567 147-201 (234)
333 1mzb_A Ferric uptake regulatio 21.6 2.2E+02 0.0075 21.4 6.0 60 388-448 7-67 (136)
334 3d5l_A Regulatory protein RECX 21.5 3.6E+02 0.012 22.5 12.3 50 485-535 92-141 (221)
335 3c1d_A Protein ORAA, regulator 21.5 2.9E+02 0.01 21.5 10.7 99 485-589 46-144 (159)
336 3mwm_A ZUR, putative metal upt 21.2 1.5E+02 0.0051 22.5 5.0 49 84-132 16-64 (139)
337 2fv2_A RCD1 required for cell 20.9 1.7E+02 0.006 25.1 5.5 58 509-566 178-236 (268)
338 2ion_A PDCD4, programmed cell 20.8 3E+02 0.01 21.3 8.1 21 230-250 15-35 (152)
339 2w57_A Ferric uptake regulatio 20.5 2.3E+02 0.008 21.8 6.1 45 405-449 22-67 (150)
340 3iqu_A 14-3-3 protein sigma; s 20.4 3.9E+02 0.013 22.6 9.5 47 521-567 150-204 (236)
341 2cwy_A Hypothetical protein TT 20.3 1.3E+02 0.0046 21.0 4.1 48 59-108 14-66 (94)
342 3t5v_B Nuclear mRNA export pro 20.2 2.1E+02 0.0071 27.3 6.7 61 472-532 179-248 (455)
343 3eyy_A Putative iron uptake re 20.1 2.5E+02 0.0086 21.5 6.1 43 157-200 24-66 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-44 Score=371.68 Aligned_cols=506 Identities=9% Similarity=-0.049 Sum_probs=424.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|....+...|+.+ |.+++..|+.++..+.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 45666677777665 6678899999999999999999999999999865 57889999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhc---------------CCCCcHHHHHHHHHHHHhcCChH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVF---------------ACDPNVVTFNTLINGLCRTRNTL 203 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~ 203 (603)
++++... .++..+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988654 568899999999999999999999999954321 22346889999999999999999
Q ss_pred HHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHH--HH-HHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037409 204 VALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAK--EL-LLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC 280 (603)
Q Consensus 204 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 280 (603)
+|++.|+++.+.+ +.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.+
T Consensus 218 ~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 218 RAKECYKEALMVD----AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHC----TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 9999999999873 445666666665554433322221 11 4445554444556677778899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037409 281 LFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGC 360 (603)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 360 (603)
+|+++.+. +++..+++.++..|.+.|++++|..+|+++.+.++. +..++..++.++...|++++|.++++.+.+..
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998865 589999999999999999999999999999987644 77889999999999999999999999998764
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHH
Q 037409 361 RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATY 440 (603)
Q Consensus 361 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (603)
+.+..++..++.+|.+.|++++|.++|+++.+... .+..+|+.++..|.+.|++++|+++|+++.+.+. .+..++..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHH
Confidence 45778899999999999999999999999987533 3678999999999999999999999999987653 377889999
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC----CCCCC--HhHHHHHHHHH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHK----GPIPD--VVTCSTMIHWL 514 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~ 514 (603)
+.+|.+.|++++|.++|+++.+.. +.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999876 668999999999999999999999999999886 55677 78999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
.+.|++++|++.++++.+.+ +.+..+|..++.+|.+.|++++|.+.++++.+..+. ++..+..++.+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN--EIMASDLLKRALE 595 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHh
Confidence 99999999999999999886 668999999999999999999999999999997765 8888888887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.4e-42 Score=356.29 Aligned_cols=493 Identities=10% Similarity=0.031 Sum_probs=408.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHH
Q 037409 92 AKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAA 171 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 171 (603)
...|....+...+..+. .++...++.++..+.+.|++++|..+++++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34455555555555443 467889999999999999999999999999865 457788999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc------------CCccCCChhhHHHHHHHHHhcCC
Q 037409 172 RLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEF------------GAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
.+|+++... +++..+++.++.+|.+.|++++|+++|+++.... ....+.+..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999998654 7889999999999999999999999999532211 00123458899999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKC--L-FIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRL 316 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 316 (603)
+++|.++|+++.+.+. .+...+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++
T Consensus 216 ~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 216 FDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999999988642 255666666665554433332221 1 44454444444555677778889999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 037409 317 LELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIR 396 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 396 (603)
|+++.+. +++..++..++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +
T Consensus 295 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 295 LSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence 9999876 5789999999999999999999999999999876 4478889999999999999999999999998653 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
.+..++..++..|.+.|++++|.++|+++.+... .+..++..++..+.+.|++++|.++|+++.+.+ +.+..++..++
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 448 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLG 448 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 4788999999999999999999999999987543 367899999999999999999999999999876 66889999999
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVPS--EVTFCTLLRGFV 550 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 550 (603)
.+|.+.|++++|.++|+++.+..+. +..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.
T Consensus 449 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 449 MQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999999997665 8899999999999999999999999999876 55676 789999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 551 QNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.|++++|.+.++++.+.++ .++..+..++.+|.+.|++++|.+++++++
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLST--NDANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999998765 489999999999999999999999999875
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.7e-30 Score=250.65 Aligned_cols=380 Identities=9% Similarity=0.011 Sum_probs=227.7
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
.+.+.|++++|++.++++.+. .|.+...+..+...+...|++++|...++...+. .+.+..+|..++..|.+.|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ----EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCC
Confidence 334445555555555544443 2333334444444444555555555555444433 12244445555555555555
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
+++|+..|+++.... +.+...+..+..++.+.|++++|...++++.+..+. +...+..+...+...|++++|.+.|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555554432 223344555555555555555555555555544321 233444555555555666666666666
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS 434 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (603)
+.+.. +.+..++..+...+.+.|++++|+..|+++...++ .+...+..+...+...|++++|...+++.....+. +.
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence 55542 22345555566666666666666666666655432 24555666666666677777777777666554322 45
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
.++..+...+...|++++|...++++.+.. +.++.++..++.++.+.|++++|...|+++.+..+. +..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHH
Confidence 666667777777777777777777777654 445667777777777777777777777777776443 667777777777
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK 589 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 589 (603)
...|++++|++.++++++.. +.+..++..++.++.+.|++++|...++++++..+ .....+..++.++...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p--~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHhHHHHHHHcc
Confidence 77778888888777777753 45567777777777788888888888887776544 36677777777776655
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.1e-29 Score=247.36 Aligned_cols=381 Identities=14% Similarity=0.067 Sum_probs=246.2
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCC
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGF 239 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 239 (603)
.+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+. .|.+..+|..+...+.+.|+
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~----~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ----NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHHCCC
Confidence 3444555555555555554432 223334444445555555555555555555544 23444555555555555555
Q ss_pred hhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 240 VDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLEL 319 (603)
Q Consensus 240 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 319 (603)
+++|.+.|+++.+.. +.+...|..++..+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555554431 1233445555555555555555555555555442 22333444555555555666666666666
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 037409 320 MIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSV 399 (603)
Q Consensus 320 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 399 (603)
+.+..+ .+..++..+...+...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|+..|++.....+ .+.
T Consensus 161 al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~ 237 (388)
T 1w3b_A 161 AIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 237 (388)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCH
Confidence 555432 244556666666666666666666666666653 22445566667777777777777777777766532 256
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 037409 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGL 479 (603)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (603)
.++..+...+...|++++|+..++++.+..+. +..++..+...+.+.|++++|...++++.+.. +.+..++..++..+
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 67777777888888888888888887775433 56677788888888888888888888888765 66788888888888
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
.+.|++++|...++++.+..+. +..++..++.++.+.|++++|+..++++++.. |.+...+..++..+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 8899999999999988886544 67788888888999999999999999988864 4567778888877766653
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1e-26 Score=235.75 Aligned_cols=452 Identities=12% Similarity=0.009 Sum_probs=264.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
+..|...+..+.+.|++++|+..|++++..+ |+..++..++.++...|++++|...++++.+..+. +..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4556677777777777777777777777664 56677777777777777777777777777766433 55666667777
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
+...|++++|...|+++...+ +++......++..+........+.+.+..+.... ..++...+..-..........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTAT---ATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC------------------------------CC
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhhccCChhhHHHhhccCC
Confidence 777777777777777766654 3333333333333333222222222222222111 011111111100000011111
Q ss_pred hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 037409 241 DKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK---DGKMDKVNRLL 317 (603)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 317 (603)
.....+...+......+. . .....+.+...+......+.. .|++++|...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~----------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 212 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELT----------------F----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESF 212 (514)
T ss_dssp CCHHHHHHHHTTSCCCCC----------------C----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHH----------------H----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHH
Confidence 111111111111100000 0 000001123333333333333 56666666666
Q ss_pred HHHHH-----CCC--------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 318 ELMIQ-----RGV--------NPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 318 ~~~~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
+++.+ ... +.+..++..+...+...|++++|.+.++++.+.... ...+..+...+...|++++|.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~ 290 (514)
T 2gw1_A 213 TKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYY 290 (514)
T ss_dssp HHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGG
T ss_pred HHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHH
Confidence 66665 211 112345566666777777777777777777766422 566666777777777777777
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
..++++..... .+...+..+...+...|++++|...++++...... +...+..+...+...|++++|...++++.+..
T Consensus 291 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 368 (514)
T 2gw1_A 291 NYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368 (514)
T ss_dssp GHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 77777766533 25566777777777777777777777777665433 45566677777777788888888887777654
Q ss_pred CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC-C----HhHHHHHHHHHHH---cCChhHHHHHHHHHHHCCCC
Q 037409 465 CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIP-D----VVTCSTMIHWLCK---EGQMDKANDLLLDMEAKNCV 536 (603)
Q Consensus 465 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 536 (603)
+.+...+..++.++.+.|++++|...++++.+..+.. + ...|..++.++.. .|++++|...++++++.. +
T Consensus 369 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 446 (514)
T 2gw1_A 369 -PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-P 446 (514)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-T
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-c
Confidence 4466777777888888888888888887777643321 1 2367777777877 788888888888887764 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.+..++..++.++.+.|++++|...++++.+..+.
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 56777777888888888888888888888776554
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-27 Score=238.26 Aligned_cols=435 Identities=10% Similarity=-0.056 Sum_probs=292.7
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHH
Q 037409 153 TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIID 232 (603)
Q Consensus 153 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (603)
.+......+.+.|++++|+..|+++... .|+..+|..+..++...|++++|+..++++++. .|.+..++..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~ 81 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL----KPDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc----ChHHHHHHHHHHH
Confidence 4444555555566666666666665554 245555666666666666666666666666554 2344555555666
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 233 GLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDK 312 (603)
Q Consensus 233 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (603)
++...|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 66666666666666666555432 23333333333333322222222222222111111111111110000001111111
Q ss_pred HHHHHHHHHHCCC---------CCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCcchH
Q 037409 313 VNRLLELMIQRGV---------NPDTVTYNSLMDGFCL---VGRISRARELFVSMVS-----KGC--------RHDVYSY 367 (603)
Q Consensus 313 a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~ 367 (603)
...+...+..... +.+...+......+.. .|++++|...++++.+ ... +.+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1124445455554554 8999999999999988 311 1234567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN 447 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (603)
..+...+...|++++|...|+++...... ...+..+...+...|++++|...++++...... +...+..+...+...
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHh
Confidence 78888999999999999999999886543 888899999999999999999999999876533 567888899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++|+..+
T Consensus 318 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999866 557889999999999999999999999999987555 6778999999999999999999999
Q ss_pred HHHHHCCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 528 LDMEAKNCVPS------EVTFCTLLRGFVQ---NNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 528 ~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+++.+.. +.+ ...+..++.++.. .|++++|...++++.+..+. +...+..++.+|.+.|++++|.+.+
T Consensus 396 ~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~ 472 (514)
T 2gw1_A 396 DLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SEQAKIGLAQMKLQQEDIDEAITLF 472 (514)
T ss_dssp HHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998753 222 3388999999999 99999999999999987654 7889999999999999999999999
Q ss_pred Hhhc
Q 037409 599 RHLL 602 (603)
Q Consensus 599 ~~~l 602 (603)
++.+
T Consensus 473 ~~a~ 476 (514)
T 2gw1_A 473 EESA 476 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9865
No 7
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=3.5e-28 Score=239.60 Aligned_cols=201 Identities=16% Similarity=0.239 Sum_probs=136.2
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC---------hHHHHH
Q 037409 138 VLGRILRSCFTPN-TVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN---------TLVALK 207 (603)
Q Consensus 138 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A~~ 207 (603)
+.+++.+.+.... ..+++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .++|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 3344444443333 234666777777777777777777777777777777777777777765543 466777
Q ss_pred HHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 208 LFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMD 287 (603)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 287 (603)
+|++|...+ ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 92 lf~~M~~~G---~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 92 IFKQMIVDK---VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHTT---CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 777777665 66777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 288 NGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL 341 (603)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 341 (603)
.|+.||..+|+.|+.+|++.|++++|.+++++|.+.+..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777777777777777777777766654
No 8
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.2e-28 Score=239.03 Aligned_cols=184 Identities=16% Similarity=0.201 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD---------WKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
++.+|.+|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. +++|.++|++|...|+.||..+|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty 108 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF 108 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence 444555555555555555555555555555555555555555544332 34455555555555555555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKD 377 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (603)
+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.
T Consensus 109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~ 188 (501)
T 4g26_A 109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT 188 (501)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (603)
|++++|.++|++|.+.+..|+..||+.++..|.
T Consensus 189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 555555555555555445555555554444443
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=3.3e-25 Score=225.94 Aligned_cols=437 Identities=12% Similarity=0.040 Sum_probs=328.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLING 195 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (603)
...+..++..+.+.|++++|...|+++++..+. +..++..+...|.+.|++++|++.|+++.+.. +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456778888999999999999999999988644 78899999999999999999999999998875 5567888999999
Q ss_pred HHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcC
Q 037409 196 LCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN--INPNVITYNSLICGFCCVD 273 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 273 (603)
+...|++++|+..|+ .... .|+. ....+..+...+...+|...++.+.... ..+........+..+....
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~-----~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL-----NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHH-HHhc-----CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999996 4332 1221 2223445556666788999998886641 1111122234455566677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHH
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVV-TFNAMINYNCKD--------GKMDKVNRLLELMIQRGVNPDT-------VTYNSLMD 337 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~ 337 (603)
+.+.+...+...... .+... ....+...+... |++++|..+++++.+..+. +. .++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHH
Confidence 777666555443322 22222 333333333322 3788999999999876433 22 24666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGD 417 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 417 (603)
.+...|++++|.+.++.+.+.. |+...+..+...+...|++++|...|+++..... .+..++..+...+...|++++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHH
Confidence 8888999999999999999874 4577788888899999999999999999887643 367889999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
|...++++....+. +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+
T Consensus 329 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 329 AKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999876433 45678888999999999999999999998875 66788999999999999999999999999887
Q ss_pred CCCCC-----CHhHHHHHHHHHHHc----------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 498 KGPIP-----DVVTCSTMIHWLCKE----------GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 498 ~~~~p-----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 562 (603)
..+.. ....+..++.++... |++++|+..++++++.. +.+..++..++.+|.+.|++++|.+.+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 485 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELF 485 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 53221 122345556778888 99999999999999875 567888999999999999999999999
Q ss_pred HHHHHCCCC
Q 037409 563 HKMAAEKLV 571 (603)
Q Consensus 563 ~~~~~~~~~ 571 (603)
+++++..+.
T Consensus 486 ~~al~~~~~ 494 (537)
T 3fp2_A 486 EDSAILART 494 (537)
T ss_dssp HHHHHHC--
T ss_pred HHHHHhCCC
Confidence 999987665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.95 E-value=1.1e-24 Score=222.00 Aligned_cols=437 Identities=11% Similarity=0.052 Sum_probs=324.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
...|..++..+.+.|++++|+..|+++++.. |.++.++..++.++...|++++|...++++++..+. +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4667888899999999999999999998876 678888999999999999999999999999887644 77888889999
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
+...|++++|+..|+.+ .. .|+.. ...+..+...+...+|...++++...... ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEG-RGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC--------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCcc-ccccccchHhHHHHHHHhcCh
Confidence 99999999999999644 22 23322 22244555566667888888888764211 011111223445555666666
Q ss_pred hHHHHHHHHHhhCCCCCCh-hhHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHH
Q 037409 241 DKAKELLLQMKDRNINPNV-ITYNSLICGFCC--------VDDWKEAKCLFIEMMDNGVQPD-------VVTFNAMINYN 304 (603)
Q Consensus 241 ~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 304 (603)
+.+...+...... .+.. .....+...+.. .|++++|..+++++.+.. +.+ ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHH
Confidence 6665554443322 1121 123333333322 247889999999988764 223 23466677788
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHH
Q 037409 305 CKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAV 384 (603)
Q Consensus 305 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 384 (603)
...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|+
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 88999999999999998874 447788888999999999999999999998874 346678888999999999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK 464 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 464 (603)
..|+++...... +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999886433 5678888999999999999999999999876433 56678888999999999999999999987542
Q ss_pred C-----CCChHHHHHHHHHHHhC----------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 037409 465 C-----ELRIETYNCLINGLCKM----------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLD 529 (603)
Q Consensus 465 ~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 529 (603)
. ......+.....++.+. |++++|...|+++.+..+. +...+..++.++...|++++|.+.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1 11223355566778787 9999999999999997665 788899999999999999999999999
Q ss_pred HHHCC
Q 037409 530 MEAKN 534 (603)
Q Consensus 530 ~~~~~ 534 (603)
+++..
T Consensus 488 al~~~ 492 (537)
T 3fp2_A 488 SAILA 492 (537)
T ss_dssp HHHHC
T ss_pred HHHhC
Confidence 99875
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.6e-24 Score=214.00 Aligned_cols=317 Identities=13% Similarity=0.066 Sum_probs=232.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 037409 65 AVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 65 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 144 (603)
+...|.+++..+|. +...|..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|...++++.+
T Consensus 11 ~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34444455554443 67788888889999999999999999888764 56788888888889999999999999998888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH---HHHHHH------------HHHHHhcCChHHHHHHH
Q 037409 145 SCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV---VTFNTL------------INGLCRTRNTLVALKLF 209 (603)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~ 209 (603)
.++. +..++..++..|.+.|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|+..|
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7544 67788888889999999999999999988763 2333 455544 44478889999999999
Q ss_pred HHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 210 EEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNG 289 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 289 (603)
+++.+. .+.+...+..++.+|...|++++|.+.|+++.+.. +.+..++..++..|...|++++|+..|+++....
T Consensus 167 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 241 (450)
T 2y4t_A 167 DKILEV----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD 241 (450)
T ss_dssp HHHHHH----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHh----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999886 35677888889999999999999999999887753 3467888889999999999999999999888753
Q ss_pred CCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 290 VQPDVVTFNAM------------INYNCKDGKMDKVNRLLELMIQRGVNPD----TVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 290 ~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
+.+...+..+ ...+.+.|++++|...++++.+..+. + ...+..+...+.+.|++++|++.++
T Consensus 242 -p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444443 66677777777777777777765322 2 2356666677777777777777777
Q ss_pred HHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 037409 354 SMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE 393 (603)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 393 (603)
.+.+.. +.+...+..+..+|...|++++|...|+++.+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 776653 334566777777777777777777777777664
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=4.4e-24 Score=212.39 Aligned_cols=392 Identities=11% Similarity=0.009 Sum_probs=256.2
Q ss_pred hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHH
Q 037409 168 MEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELL 247 (603)
Q Consensus 168 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 247 (603)
..+...+.++.... +.+...+..++..+.+.|++++|+.+|+++.+. .+.+..++..++.++...|++++|...|
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 83 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDG----DPDNYIAYYRRATVFLAMGKSKAALPDL 83 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 34445555555442 445667788888888888888888888888876 3556778888888888888888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 248 LQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV---VTFNAMINYNCKDGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (603)
+++.+.+ +.+...+..++..|...|++++|...|+++.+.. +.+. ..+..+...+..
T Consensus 84 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~------------------ 143 (450)
T 2y4t_A 84 TKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM------------------ 143 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH------------------
Confidence 8887763 3356777888888888888888888888887753 2233 445554433111
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHH
Q 037409 325 VNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNT 404 (603)
Q Consensus 325 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 404 (603)
..+..+...+...|++++|.+.++.+.+.. +.+...+..++.+|.+.|++++|+..|+++..... .+..++..
T Consensus 144 -----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~ 216 (450)
T 2y4t_A 144 -----QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYK 216 (450)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 012223334555666666666666666553 23455566666666677777777777766665422 25566666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHH------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC----
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATY------------IDGLCKNGFVLEAVQVFQAIRNCKCELR---- 468 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~---- 468 (603)
+...|...|++++|+..++++....+. +...+..+ +..+...|++++|...|+++.+.. +.+
T Consensus 217 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~ 294 (450)
T 2y4t_A 217 ISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYT 294 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHH
Confidence 667777777777777777766654222 23333332 677888888999988888888754 223
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
..++..++.++.+.|++++|...++++.+..+. +...|..++.+|...|++++|+..++++++.. +.+...+..+..+
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 347788888888899999999999888876544 67888888888999999999999999888864 4456677766633
Q ss_pred ------------HHhcC-----CHHHHHHHHHH-HHHCCCCC-CC-------HHHHHHHHHHHHcCCcHHHHH
Q 037409 549 ------------FVQNN-----KKSKVVVLLHK-MAAEKLVV-SD-------LSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 549 ------------~~~~g-----~~~~a~~~~~~-~~~~~~~~-~~-------~~~~~~l~~~~~~~g~~~eA~ 595 (603)
|...| +.+++.+.+++ ..+..+.. ++ ...+..+..+|...|+.+.+.
T Consensus 373 ~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 373 QRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 44444 56777888887 44443321 12 225667777777777765543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=5.5e-21 Score=183.74 Aligned_cols=334 Identities=10% Similarity=0.017 Sum_probs=229.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 223 DVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMIN 302 (603)
Q Consensus 223 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 302 (603)
++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556667777777777777777777776653 2356677777777777777777777777777653 335566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 037409 303 YNCKDGKMDKVNRLLELMIQRGVN--PDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKV 380 (603)
Q Consensus 303 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 380 (603)
.+...|++++|...++++.+..+. .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777777665320 12222222211100 00122234566677777
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
++|+..++++....+ .+...+..+...+...|++++|...++++....+ .+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766533 3556677777777777777777777777766532 25666777777777777777777777777
Q ss_pred HHcCCCCChHHHH------------HHHHHHHhCCChhHHHHHHHHHhhCCCCCCH----hHHHHHHHHHHHcCChhHHH
Q 037409 461 RNCKCELRIETYN------------CLINGLCKMGRLKTACKLFHRLQHKGPIPDV----VTCSTMIHWLCKEGQMDKAN 524 (603)
Q Consensus 461 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~ 524 (603)
.+.. +.+...+. .++..+.+.|++++|...++++.+..+. +. ..+..++.++...|++++|+
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7654 33444332 3366788899999999999998886544 33 23556778889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
..++++++.. +.+..++..++.++...|++++|...++++++..+. +......+..+....
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN--DQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHH
Confidence 9999998874 557888999999999999999999999999986654 677777777665543
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1.2e-19 Score=181.79 Aligned_cols=356 Identities=10% Similarity=0.004 Sum_probs=171.8
Q ss_pred CHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccC
Q 037409 150 NTVTFNFLINGLCA----EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICK 221 (603)
Q Consensus 150 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 221 (603)
+...+..+...|.. .+++++|+..|++..+.| +..++..|...|.. .+++++|+++|++..+.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----- 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----- 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----
Confidence 44555555555555 555666666665555432 34455555555555 555566666665555432
Q ss_pred CChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 037409 222 PDVVTYNSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 222 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +
T Consensus 110 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 110 -LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 34444455555554 455555555555555443 34445555555544 445555555555555443 3
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCcc
Q 037409 294 VVTFNAMINYNCK----DGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCL----VGRISRARELFVSMVSKGCRHDVY 365 (603)
Q Consensus 294 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 365 (603)
...+..+...|.. .++.++|..+|++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +..
T Consensus 183 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 256 (490)
T 2xm6_A 183 VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSI 256 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHH
T ss_pred HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 4444445555544 455555555555554443 23344444444443 445555555555544432 233
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 366 SYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
.+..+..+|... ....+++++|+..|++..+.+ +...+..+...+.
T Consensus 257 a~~~lg~~y~~g-------------------------------~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 257 AQFRLGYILEQG-------------------------------LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHHHHHHHHHT-------------------------------TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-------------------------------CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 333444444440 000444444544444444332 2233333444444
Q ss_pred hC-----CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC---ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH-
Q 037409 446 KN-----GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG---RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK- 516 (603)
Q Consensus 446 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 516 (603)
.. +++++|...|++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 43 45555555555544432 2344444444444433 4455555555555431 34444555555554
Q ss_pred ---cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 517 ---EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 517 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 569 (603)
.+++++|+.+|+++.+.+ +...+..|+..|.. .+++++|..+++++.+.+
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 455555555555555432 34444455555544 455555555555555444
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=9.5e-21 Score=182.09 Aligned_cols=314 Identities=11% Similarity=0.066 Sum_probs=231.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMD 337 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 337 (603)
++..+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34556666666667777777777777666553 334566666666666666666666666666655322 4455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 338 GFCLVGRISRARELFVSMVSKGCR--HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
.+...|++++|.+.++++.+.... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666666654210 01111111111100 11233346788899999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
++|+..++++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987643 367888899999999999999999999999865 668899999999999999999999999999
Q ss_pred hhCCCCCCHhHHH------------HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHH
Q 037409 496 QHKGPIPDVVTCS------------TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV----TFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 496 ~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~ 559 (603)
.+..+. +...+. .++..+...|++++|+..++++.+.. +.+.. .+..++.++...|++++|.
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence 987554 444443 23667899999999999999999875 33442 3556889999999999999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..++++++..+. ++..+..++.+|...|++++|.+.+++.+
T Consensus 293 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 333 (359)
T 3ieg_A 293 RICSEVLQMEPD--NVNALKDRAEAYLIEEMYDEAIQDYEAAQ 333 (359)
T ss_dssp HHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999987654 88999999999999999999999999875
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.90 E-value=6.6e-19 Score=176.37 Aligned_cols=365 Identities=12% Similarity=0.006 Sum_probs=264.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhH
Q 037409 98 DTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA----EGRIME 169 (603)
Q Consensus 98 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 169 (603)
..++..++...+.| ++.....+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 24 ~~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 44567777776654 78888889999988 899999999999999874 67888889999998 899999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh----cCChh
Q 037409 170 AARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK----DGFVD 241 (603)
Q Consensus 170 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 241 (603)
|.+.|++..+.| +..++..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .++++
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~------~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG------RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999998864 67788888899988 889999999999998763 67788888888887 88999
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 037409 242 KAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK----DGKMDKV 313 (603)
Q Consensus 242 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 313 (603)
+|.+.|++..+.| +...+..+...|.. .++.++|..+|++..+.| +...+..+...|.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999998875 77889999999988 899999999999999875 66788888888886 7899999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhc-----CChHHHH
Q 037409 314 NRLLELMIQRGVNPDTVTYNSLMDGFCL----VGRISRARELFVSMVSKGCRHDVYSYNILINANCKD-----QKVEDAV 384 (603)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~ 384 (603)
..++++..+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|... +++++|+
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 99999998775 45666777777777 788888888888887664 445566666666665 6666666
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----CCCHHHHHHHH
Q 037409 385 CLYREMLSERIRPSVITYNTLLSGLFQVG---NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK----NGFVLEAVQVF 457 (603)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 457 (603)
..|++..+.+ +...+..+...|...| ++++|++.+++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 6666666542 3344444444444433 4455555555544432 33344444444444 44444444444
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHh----CCChhHHHHHHHHHhhC
Q 037409 458 QAIRNCKCELRIETYNCLINGLCK----MGRLKTACKLFHRLQHK 498 (603)
Q Consensus 458 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~ 498 (603)
++..+.+ ++..+..+...|.+ .+++++|...|++..+.
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4444432 23444444444444 44444444444444443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=4.1e-19 Score=179.81 Aligned_cols=436 Identities=11% Similarity=0.061 Sum_probs=230.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCC
Q 037409 68 FFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCF 147 (603)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 147 (603)
+|++++..+|. +..+|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|++++...
T Consensus 1 ~le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 1 MAEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp CHHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred ChhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 36777777765 8889999998 478899999999999999874 6678889999999999999999999999998874
Q ss_pred CCCHhhHHHHHHHH-HhcCCHhHHHH----HHHHHHh-cCCCC-cHHHHHHHHHHHHh---------cCChHHHHHHHHH
Q 037409 148 TPNTVTFNFLINGL-CAEGRIMEAAR----LFKKLNV-FACDP-NVVTFNTLINGLCR---------TRNTLVALKLFEE 211 (603)
Q Consensus 148 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~g~~~~A~~~~~~ 211 (603)
|+...|..++... ...|++++|.+ +|++... .|..| +...|...+....+ .|+++.|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 4777777777533 35677777665 6666554 24333 45677777776654 5667777777777
Q ss_pred HHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----
Q 037409 212 MVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMM----- 286 (603)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----- 286 (603)
.++.. .......|..........|. ..+. .++. ...+++..|..+++...
T Consensus 156 al~~P---~~~~~~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~ 210 (530)
T 2ooe_A 156 GCVNP---MINIEQLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKG 210 (530)
T ss_dssp HTTSC---CTTHHHHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhch---hhhHHHHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence 76520 00001222221111100110 0000 0000 02233444544444321
Q ss_pred -HCC---CCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH----HHHHH
Q 037409 287 -DNG---VQPD--------VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRI----SRARE 350 (603)
Q Consensus 287 -~~~---~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~ 350 (603)
+.. ++|+ ...|...+......+. ..++. +.+..
T Consensus 211 l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~-------------------------------~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 211 LDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL-------------------------------RTEDQTLITKRVMF 259 (530)
T ss_dssp CCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS-------------------------------CCSCSHHHHHHHHH
T ss_pred hccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc-------------------------------cCCcchhHHHHHHH
Confidence 110 1222 1222222221111100 00111 23444
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 037409 351 LFVSMVSKGCRHDVYSYNILINANCK-------DQKVE-------DAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 416 (603)
+|++++... +.+...|..++..+.+ .|+++ +|..+|++.+..-.+.+...|..++..+.+.|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 444444431 2233444444444433 45544 55555555554212223455555555555556666
Q ss_pred HHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhCCChhHHHHHHHH
Q 037409 417 DALKLIDKMQLNDVVPDS-FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLING-LCKMGRLKTACKLFHR 494 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 494 (603)
+|..+|+++.+..+. +. ..|...+..+.+.|++++|..+|++..+.. +.+...+...+.. +...|+.++|..+|++
T Consensus 339 ~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 339 KVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 666666555553211 21 345555555555556666666666655432 2222333222222 2245666666666666
Q ss_pred HhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 495 LQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VP--SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 495 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
.++..+. +...|..++..+.+.|+.++|..+|++++..+. .| ....|...+......|+.+.+..+.+++.+.
T Consensus 417 al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 417 GLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6554333 455566666666666666666666666665421 11 1234555555555566666666666665543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.89 E-value=2.5e-20 Score=176.85 Aligned_cols=292 Identities=9% Similarity=-0.117 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 037409 293 DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILIN 372 (603)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (603)
+...+..+...+...|++++|..+++++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444555555555566666666666666554322 33444455555666666666666666666543 224455566666
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 373 ANCKDQ-KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 373 ~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
.+...| ++++|...|+++..... .+...+..+...+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 666666 66666666666665432 24455666666667777777777777766654322 3344555666677777777
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC--------CCCHhHHHHHHHHHHHcCChhHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP--------IPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
+|...++++.+.. +.+...+..++..+...|++++|...++++.+... ..+..++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 7777777776654 45667777777777777777777777777665321 22345677777777788888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HcCCcHH
Q 037409 524 NDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL-SKDKKYR 592 (603)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 592 (603)
+..++++++.. +.+...+..++.++...|++++|.+.++++.+..+. ++..+..++.++ ...|+.+
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD--DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC--CHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC--chHHHHHHHHHHHHHhCchh
Confidence 88888777764 456677777777888888888888888877765543 677777777777 4555543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=7e-19 Score=178.05 Aligned_cols=430 Identities=10% Similarity=0.033 Sum_probs=297.1
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCC
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGA 218 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 218 (603)
+++.++..+. +...|..++. +.+.|++++|..+|+++.+.- +.+...|..++..+.+.|++++|..+|++++..
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--- 75 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--- 75 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence 4555555433 7788888888 477899999999999998762 556778999999999999999999999999875
Q ss_pred ccCCChhhHHHHHHHH-HhcCChhHHHH----HHHHHhhC-CCCC-ChhhHHHHHHHHHh---------cCCHHHHHHHH
Q 037409 219 ICKPDVVTYNSIIDGL-CKDGFVDKAKE----LLLQMKDR-NINP-NVITYNSLICGFCC---------VDDWKEAKCLF 282 (603)
Q Consensus 219 ~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~ 282 (603)
.|+...|..++... ...|+.++|.+ +|+..... |..| +...|...+..... .|++++|..+|
T Consensus 76 --~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y 153 (530)
T 2ooe_A 76 --VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVY 153 (530)
T ss_dssp --CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHH
T ss_pred --CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHH
Confidence 35777777777533 35677777665 66665442 4333 45677777766544 67788888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH------
Q 037409 283 IEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMV------ 356 (603)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------ 356 (603)
++.++....+....|..........|. . +...++. ...+++..|..++....
T Consensus 154 ~~al~~P~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 154 QRGCVNPMINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp HHHTTSCCTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhchhhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 888763111112233222221111110 0 0111110 12334555665555422
Q ss_pred HcC---CCCC--------cchHHHHHHHHHhc----CCh----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh------
Q 037409 357 SKG---CRHD--------VYSYNILINANCKD----QKV----EDAVCLYREMLSERIRPSVITYNTLLSGLFQ------ 411 (603)
Q Consensus 357 ~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------ 411 (603)
+.. ++|+ ...|...+...... ++. +++..+|++++... +.+...|..++..+..
T Consensus 212 ~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~ 290 (530)
T 2ooe_A 212 DRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLA 290 (530)
T ss_dssp CSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhh
Confidence 211 2332 12344433322221 232 37788999988763 3367888888888775
Q ss_pred -cCCHH-------HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhC
Q 037409 412 -VGNLG-------DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI-ETYNCLINGLCKM 482 (603)
Q Consensus 412 -~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 482 (603)
.|+++ +|..++++..+.-.+.+...+..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHh
Confidence 78887 899999999863223367888889999999999999999999999854 3343 5899999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHH-HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHW-LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL 561 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (603)
|++++|..+|++..+..+. +...|...+.. +...|+.++|..+|+++++.. +.+...|..++..+.+.|+.++|..+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHH
Confidence 9999999999999986433 33333333333 346899999999999999874 55788999999999999999999999
Q ss_pred HHHHHHCCCCCCC--HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 562 LHKMAAEKLVVSD--LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 562 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+++++..++.+|+ ..+|...+......|+.+++..+.++++
T Consensus 448 ~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 448 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987654232 4478888888889999999999988764
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=6.3e-20 Score=174.11 Aligned_cols=293 Identities=12% Similarity=-0.007 Sum_probs=200.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 257 PNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLM 336 (603)
Q Consensus 257 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 336 (603)
.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+..+. +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 345555566666666666666666666666543 334445555556666666666666666666655322 455566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 337 DGFCLVG-RISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 337 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
..+...| ++++|.+.++++.+.. +.+...+..+...+...|++++|+..|+++...... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 6777777777766553 224555666677777777777777777776665322 345566677777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--------CCCChHHHHHHHHHHHhCCChhH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK--------CELRIETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 487 (603)
++|...++++.+..+. +...+..+...+...|++++|...++++.+.. .+....++..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 7777777777665432 56677777777888888888888887776531 13346788888888888899999
Q ss_pred HHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHH
Q 037409 488 ACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF-VQNNKKS 556 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 556 (603)
|...++++.+..+. +...|..++.++...|++++|.+.++++++.. +.+...+..++.++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999888886555 67788888888889999999999999888865 55677788888877 4555543
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=9.8e-18 Score=174.99 Aligned_cols=424 Identities=12% Similarity=0.122 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHH
Q 037409 113 FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSC--FTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFN 190 (603)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 190 (603)
..++.-.+..++.|...|.+.+|+++++++...+ +..+....+.++....+. +..+.....+++... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 4567777888999999999999999999998432 123556777777777766 556666666555421 1 33
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 037409 191 TLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC 270 (603)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 270 (603)
.+...+...|.+++|..+|++... .....+.++ ...+++++|.++.++.. ++.+|..+..++.
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~--------~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDV--------NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCC--------HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 477888889999999999998632 122223332 27788999999988662 5788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037409 271 CVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARE 350 (603)
Q Consensus 271 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 350 (603)
..|++++|++.|.+. .|...|..++..+.+.|+++++.+.+....+.. +++...+.++.+|++.++++....
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999999664 477888889999999999999999999887764 333344458888999988885443
Q ss_pred HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 037409 351 LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDV 430 (603)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (603)
+. + .++...+..+...|...|++++|...|..+ ..|..+...+.+.|++++|.+.+++..
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~---- 1248 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN---- 1248 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC----
Confidence 32 2 335566777889999999999999999875 368899999999999999999998773
Q ss_pred CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 431 VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+..+.. ....|..+
T Consensus 1249 --n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-H~gmftEL 1320 (1630)
T 1xi4_A 1249 --STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-HMGMFTEL 1320 (1630)
T ss_pred --CHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-HhHHHHHH
Confidence 567888889999999999998877553 2456778889999999999999999999988876533 56677777
Q ss_pred HHHHHHc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCC
Q 037409 511 IHWLCKE--GQMDKANDLLLDMEAKNCVP------SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----------KLVV 572 (603)
Q Consensus 511 ~~~~~~~--g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~ 572 (603)
...+++. ++..+++++|..-.. +++ +...|..+...|.+.|+++.|...+-+-... =..+
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv 1398 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 1398 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhccc
Confidence 7777764 355566666654433 333 4667888999999999999988432221110 0122
Q ss_pred CCHHHHHHHHHHHHcCC---------------cHHHHHHHHH
Q 037409 573 SDLSLSSKVVDLLSKDK---------------KYRECLNQFR 599 (603)
Q Consensus 573 ~~~~~~~~l~~~~~~~g---------------~~~eA~~~~~ 599 (603)
.++++|...+..|...+ +.+.+.+++.
T Consensus 1399 ~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1399 ANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 57888888888888777 6666666665
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.2e-20 Score=182.00 Aligned_cols=266 Identities=12% Similarity=-0.017 Sum_probs=188.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLF 410 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 410 (603)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|+..|+++....+ .+..++..+...+.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34455555555555555555555555542 22344455555555555555555555555554422 24455555555555
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHhHH---------------HHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChHHHH
Q 037409 411 QVGNLGDALKLIDKMQLNDVVPDSFTFA---------------TYIDGLCKNGFVLEAVQVFQAIRNCKCEL--RIETYN 473 (603)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~ 473 (603)
..|++++|...++++....+.. ...+. ..+..+...|++++|...++++.+.. +. +..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHH
Confidence 5566666666555555433221 11111 02233348899999999999998765 33 688999
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
.++.+|.+.|++++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+..++..++.+|.+.|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999999987555 68899999999999999999999999999875 567888999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC---------CCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 554 KKSKVVVLLHKMAAEKLVV---------SDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++++|...++++++..+.. .....+..++.+|...|++++|..++++-+
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999998755431 127889999999999999999999887643
No 23
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=1.2e-16 Score=166.89 Aligned_cols=411 Identities=13% Similarity=0.130 Sum_probs=311.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNG--LFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFL 157 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 157 (603)
++.--...+++|...|.+.+|++++++..-.+ +..+....+.++.+..+. +..+..++..+.... ....+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHH
Confidence 34444567888999999999999999998443 123455666677666666 556666666665422 23447
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 158 INGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 158 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn---------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHhC
Confidence 788889999999999999963 12223333332 6789999999988652 467899999999999
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|++++|.+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.+++++.....
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI 1190 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI 1190 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH
Confidence 9999999999664 378889999999999999999999999888764 33333445889999999988644442
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 037409 318 ELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRP 397 (603)
Q Consensus 318 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 397 (603)
. .++...+..+...|...|++++|..+|..+ ..|..+...+.+.|++++|++.+++. .
T Consensus 1191 ----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A 1191 ----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred ----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence 2 335566778999999999999999999986 36899999999999999999999987 3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++...... +.+...|..+..
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence 6788999999999999999998876543 3356677789999999999999999999888665 556778878888
Q ss_pred HHHhC--CChhHHHHHHHHHhhCCC----CCCHhHHHHHHHHHHHcCChhHHHHH-------------HHHHHHCCCCCC
Q 037409 478 GLCKM--GRLKTACKLFHRLQHKGP----IPDVVTCSTMIHWLCKEGQMDKANDL-------------LLDMEAKNCVPS 538 (603)
Q Consensus 478 ~~~~~--g~~~~A~~~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~-------------~~~~~~~~~~~~ 538 (603)
+|++- ++..++.+.|..-..... --+...|..+...|.+.|+++.|... |+..+.. ..+
T Consensus 1323 LyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n 1400 (1630)
T 1xi4_A 1323 LYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VAN 1400 (1630)
T ss_pred HHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--ccc
Confidence 87764 356667777665443210 02567799999999999999999832 2222222 457
Q ss_pred HHHHHHHHHHHHhcC
Q 037409 539 EVTFCTLLRGFVQNN 553 (603)
Q Consensus 539 ~~~~~~l~~~~~~~g 553 (603)
...|...+.-|...+
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 788888887777555
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.4e-19 Score=174.57 Aligned_cols=308 Identities=11% Similarity=-0.092 Sum_probs=213.9
Q ss_pred HHHhcCChhHHHH-HHHHHhhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 233 GLCKDGFVDKAKE-LLLQMKDRNI---NPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG 308 (603)
Q Consensus 233 ~~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (603)
++.-.|++++|.+ .+++...... ..+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 4556677888877 7776554321 1134567777888888888888888888887764 446677777778888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYR 388 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 388 (603)
++++|...++++.+..+ .+..++..+...+...|++++|.+.++++...... +...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh------
Confidence 88888888888777643 35667777777777888888888888877776321 22221111000 00
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 037409 389 EMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL 467 (603)
Q Consensus 389 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 467 (603)
. .. ....+..+...+ ..|++++|...++++.+..+.. +..++..+...+...|++++|...++++.+.. +.
T Consensus 178 -~----~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~ 249 (368)
T 1fch_A 178 -G----AG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred -h----hc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence 0 00 001111222233 7788999999999887654332 57788888899999999999999999988765 56
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---------
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS--------- 538 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------- 538 (603)
+...+..++.++...|++++|...++++.+..+. +...+..++.++...|++++|...++++++.. +.+
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 327 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGA 327 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccc
Confidence 7889999999999999999999999999887554 78889999999999999999999999998753 222
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 539 --EVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 539 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
..+|..++.++...|++++|..++++.+
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6889999999999999999998887544
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.6e-19 Score=173.90 Aligned_cols=267 Identities=7% Similarity=-0.078 Sum_probs=190.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (603)
..+..+...+...|++++|++.|+++++.. +.+...+..+..++...|++++|+..|+++....+ .+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 335555566666666666666666666553 23455566666666666666666666666665432 2455666666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC---------CCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--ChHHHHHHHHH
Q 037409 410 FQVGNLGDALKLIDKMQLNDVV---------PDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL--RIETYNCLING 478 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 478 (603)
...|++++|...++++.+..+. .....+..+...+...|++++|...++++.+.. +. +..++..++.+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHH
Confidence 6667777777766666543211 012233345778888999999999999998865 33 68899999999
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
|...|++++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+..++..++.+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999987655 78899999999999999999999999999875 55688899999999999999999
Q ss_pred HHHHHHHHHCCCCC----------CCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 559 VVLLHKMAAEKLVV----------SDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 559 ~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
...++++++..+.. .+..++..++.++...|+.+.|....++-
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 99999998654321 13678899999999999999999887754
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.84 E-value=5.6e-19 Score=167.29 Aligned_cols=262 Identities=10% Similarity=-0.057 Sum_probs=177.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVG 413 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 413 (603)
.+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++..... .+...+..+...+...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444432 11333344444444444444444444444444321 13344444444455555
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHH-------------HH-HH-HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFA-------------TY-ID-GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLING 478 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~-------------~l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 478 (603)
++++|...++++...... +...+. .+ .. .+...|++++|...++++.+.. +.+...+..++..
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 555555555544433211 111111 11 22 3667788999999999988766 5578899999999
Q ss_pred HHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 479 LCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 479 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
+...|++++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+..++..++.++...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999987654 68889999999999999999999999999875 56788899999999999999999
Q ss_pred HHHHHHHHHCCCCCC-----------CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 559 VVLLHKMAAEKLVVS-----------DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.++++.+..+. . +...+..++.++.+.|++++|..++++.+
T Consensus 260 ~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 260 AKQLVRAIYMQVG-GTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTT-SCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCc-cccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999875543 1 57788999999999999999999988654
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=5.9e-19 Score=165.26 Aligned_cols=284 Identities=12% Similarity=0.105 Sum_probs=131.3
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFV 137 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 137 (603)
..|++++|..+++++ +.| .+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~----~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC----NEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC----CCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 458899999999998 333 58999999999999999999999653 577799999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC
Q 037409 138 VLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG 217 (603)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 217 (603)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 88877775 4457888999999999999999887774 467789999999999999999999999965
Q ss_pred CccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 037409 218 AICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTF 297 (603)
Q Consensus 218 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 297 (603)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ..++...
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 36889999999999999999999988 27899999999999999999996655542 2344445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------CcchHHHH
Q 037409 298 NAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK-GCRH------DVYSYNIL 370 (603)
Q Consensus 298 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l 370 (603)
..++..|.+.|.++++..+++..+... +-....|+.+.-.|++- .+++..+.++.-.+. ++++ +...|..+
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 678899999999999999999988664 33556777777777664 333333333322221 2222 45678888
Q ss_pred HHHHHhcCChHHHHHHH
Q 037409 371 INANCKDQKVEDAVCLY 387 (603)
Q Consensus 371 ~~~~~~~~~~~~A~~~~ 387 (603)
...|.+.++++.|....
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 88888888888887643
No 28
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=7.6e-19 Score=169.15 Aligned_cols=264 Identities=10% Similarity=-0.053 Sum_probs=176.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+...|..++..+.+.|++++|+..|+++++.. +.+..++..++.++...|++++|...++++.+..+. +..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45567788888888888888888888888765 566778888888888888888888888888776533 5777888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhcCCCCc-HHH----------HHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC--Chhh
Q 037409 160 GLCAEGRIMEAARLFKKLNVFACDPN-VVT----------FNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP--DVVT 226 (603)
Q Consensus 160 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ 226 (603)
.|...|++++|+..|+++.+.. |+ ... +..+...+...|++++|++.|+++.+.. +. +..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~ 215 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN----GDMIDPDL 215 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS----CSSCCHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC----cCccCHHH
Confidence 8888888888888888877652 22 112 2234667777777777777777777763 22 5667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK 306 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (603)
+..+...+...|++++|.+.|++..+.. +.+..+|..+...|...|++++|+..|+++.+.. +.+..++..+..++.+
T Consensus 216 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 216 QTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 7777777777777777777777776652 3356677777777777777777777777776653 3346667777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCC-----------CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 307 DGKMDKVNRLLELMIQRGVN-----------PDTVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 307 ~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
.|++++|...++++.+.... .+..++..+..++...|+.+.+.++..
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777776654211 013445555555555666555554443
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=2.1e-17 Score=165.17 Aligned_cols=202 Identities=14% Similarity=-0.000 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHC--------CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC------
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRS--------CFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA------ 181 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 181 (603)
...|+.++.++...|++++|++.|++..+. .......+|+.+..+|...|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345566666666666666666666655432 011123455556666666666666666665543310
Q ss_pred CC-CcHHHHHHHHHHHHhc--CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHH---HHhcCChhHHHHHHHHHhhCCC
Q 037409 182 CD-PNVVTFNTLINGLCRT--RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDG---LCKDGFVDKAKELLLQMKDRNI 255 (603)
Q Consensus 182 ~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~~ 255 (603)
.. ....++..+..++... +++++|++.|+++++.. |.+...+..+..+ +...++.++|++.+++..+..
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 00 1223444444444332 34556666666655542 2333333333333 223444555555555554432
Q ss_pred CCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 256 NPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQR 323 (603)
Q Consensus 256 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (603)
+.+...+..+...+.. .+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 276 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY 276 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 1133333333333322 234445555555544432 233444445555555555555555555555444
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.7e-17 Score=163.35 Aligned_cols=344 Identities=10% Similarity=-0.034 Sum_probs=224.0
Q ss_pred CHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCC
Q 037409 61 TSNEAVYFFDCMIKMKP-SPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN--------GLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~ 131 (603)
.+......+...++..+ ......|+.++.++...|++++|++.|+++++. ..+....++..++.+|...|+
T Consensus 30 ~l~~~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~ 109 (472)
T 4g1t_A 30 SLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGR 109 (472)
T ss_dssp CHHHHHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCC
Confidence 34444444443333322 334678999999999999999999999998652 113345678889999999999
Q ss_pred cchHHHHHHHHHHCC------C-CCCHhhHHHHHHHHHhc--CCHhHHHHHHHHHHhcCCCCcHHHHHHHHHH---HHhc
Q 037409 132 TSGAFVVLGRILRSC------F-TPNTVTFNFLINGLCAE--GRIMEAARLFKKLNVFACDPNVVTFNTLING---LCRT 199 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~------~-~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 199 (603)
+++|...++++.+.. . .....++.....++... +++++|+..|++..+.. +.+...+..+..+ +...
T Consensus 110 ~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 110 LSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999887631 1 11345666666666554 57999999999999874 3345566655555 3456
Q ss_pred CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCH
Q 037409 200 RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDW 275 (603)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (603)
++.++|++.+++.++.. +.+..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++
T Consensus 189 ~~~~~al~~~~~al~l~----p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 263 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN----PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEP 263 (472)
T ss_dssp CCCCCTHHHHHHHHHHC----SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhhcC----CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCch
Confidence 88899999999999873 5566677666655554 467889999999988763 34778899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 276 KEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 276 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
++|...+++..+.. +.+..++..+...|...+... .... ...........+..+.|...++.+
T Consensus 264 ~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 264 DKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998864 445666766666554321111 1110 000001111122356777777777
Q ss_pred HHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHh--hHHHHHH-HHHhcCCHHHHHHHHHHHhhC
Q 037409 356 VSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVI--TYNTLLS-GLFQVGNLGDALKLIDKMQLN 428 (603)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 428 (603)
.+.. +.+...+..+...|...|++++|+..|++.+.....+... .+..+.. .....|++++|+..+++..+.
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7664 3355667777788888888888888888877654332211 1122221 223456666666666665553
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=6.5e-18 Score=155.59 Aligned_cols=276 Identities=11% Similarity=0.048 Sum_probs=163.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHH
Q 037409 304 NCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDA 383 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 383 (603)
....|++..|+..++......+.+.......+.++|...|+++.|+..++. ..+|+..++..+...+...++.++|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344566666666655543321111112334455666666666666654433 1233445555666666666666677
Q ss_pred HHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 384 VCLYREMLSERIRP-SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 384 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
++.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77666666554323 344455555666677777777776665 23555666666677777777777777777666
Q ss_pred cCCCCChHH--HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 463 CKCELRIET--YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 463 ~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
.. +.+... ...++..+...|++++|..+|+++.+..+. +...|+.++.++.+.|++++|++.++++++.. +.+..
T Consensus 159 ~~-p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 159 QD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp HC-TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hC-cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 53 222111 112223334456777777777777776443 66777777777777777777777777777764 45666
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSK-VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
++..++..+...|+.++ +.++++++.+..+. ++.+ .+...+.+.+++|..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~--~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS--HPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC--ChHH----HHHHHHHHHHHHHHHHc
Confidence 77777777777777754 45677777765554 4332 34456666666665544
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=2.3e-18 Score=163.02 Aligned_cols=269 Identities=13% Similarity=0.002 Sum_probs=140.5
Q ss_pred hccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 037409 56 KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGA 135 (603)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 135 (603)
....|++++|+..|++++...|. +...|..++..+...|++++|...|+++.+.. +.+..++..++..+...|++++|
T Consensus 31 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 31 MLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence 33455555555555555555443 45555555555555555555555555555443 33444555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHH-HH-HHHhcCChHHHHHHHHHHH
Q 037409 136 FVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTL-IN-GLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~A~~~~~~~~ 213 (603)
...++++.+..+. +...+..+... .|+......+ .. .+...|++++|.+.++++.
T Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 109 LASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp HHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 5555555544222 11122111000 0000000011 11 2445566666666666666
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD 293 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 293 (603)
+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+
T Consensus 166 ~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 239 (327)
T 3cv0_A 166 EMN----PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGY 239 (327)
T ss_dssp HHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 652 3455566666666666666666666666665542 2245556666666666666666666666665543 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 294 VVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNP-----------DTVTYNSLMDGFCLVGRISRARELFVSM 355 (603)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 355 (603)
...+..+...+...|++++|...++++.+..... +...+..+..++...|+.++|..+++..
T Consensus 240 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 240 VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5566666666666666666666666665543221 2445556666666666666666665543
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=8.5e-18 Score=157.45 Aligned_cols=221 Identities=10% Similarity=0.072 Sum_probs=50.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHH
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAAR 172 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 172 (603)
+.|+.++|.++++++ +++.+|+.++.++.+.|++++|++.|.+. +|...|..++..+...|++++|++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344455555555554 12235555555555555555555555331 234455555555555555555555
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhh
Q 037409 173 LFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT----------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 44444332 2334444555555555555555444432 133345555555555555555555555543
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 037409 253 RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTY 332 (603)
Q Consensus 253 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 332 (603)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+ ...+.-.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l 210 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADEL 210 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhH
Confidence 24555555555555555555555544 14455555555555555555553322221 1122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 333 NSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 333 ~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
..++..|.+.|.+++|..+++..+.
T Consensus 211 ~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 211 EELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 2344444444444444444444443
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.81 E-value=2.1e-17 Score=152.21 Aligned_cols=273 Identities=12% Similarity=0.051 Sum_probs=189.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 037409 267 CGFCCVDDWKEAKCLFIEMMDNGVQPDV--VTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGR 344 (603)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 344 (603)
+.....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3344567777777776655432 2332 3445566777777777777765543 124455666777777777778
Q ss_pred HHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 345 ISRARELFVSMVSKGCRH-DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLID 423 (603)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 423 (603)
.+.|++.++++...+..| +...+..+...+.+.|++++|++.+++ +.+...+..++..+.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888877665333 445556666777888888888888776 3467777888888888888888888888
Q ss_pred HHhhCCCCCCHHhH---HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 424 KMQLNDVVPDSFTF---ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 424 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.++..++.++.++.+.|++++|+..|+++++..+
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 887653 332111 122233445588999999999988874 67888999999999999999999999999988766
Q ss_pred CCCHhHHHHHHHHHHHcCChhH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDK-ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
. +..++..++..+...|+.++ +.++++++++.+ |.++.+. ....+.+.++++..
T Consensus 232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVL 286 (291)
T ss_dssp T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHH
Confidence 6 78888889999999998876 568888888864 3333332 23444455555544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.79 E-value=2.2e-17 Score=145.27 Aligned_cols=198 Identities=16% Similarity=0.083 Sum_probs=154.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
++...+..+...+...|++++|+..+++..+..+. +...+..+...+...|++++|...++++.+.. |.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45666777777888888888888888888776433 66777778888888888888888888888766 56777888888
Q ss_pred HHHHhC-----------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 477 NGLCKM-----------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 477 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
.++... |++++|...+++..+.+|. +...|..++.++...|++++|+..|+++++.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888888 9999999999999987666 78888999999999999999999999999886 788889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
+.++...|++++|+..++++++..+. ++..+..++.++.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK--DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999987664 8888899999999999999999988764
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.8e-16 Score=144.25 Aligned_cols=225 Identities=12% Similarity=0.054 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----HhhHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIR--PS----VITYNT 404 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~ 404 (603)
.+..+...+...|++++|.+.++++.+.. .+...+..+..++...|++++|+..++++...... ++ ...+..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34455555555566666666666555554 44555555555666666666666666555543111 11 355666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 484 (603)
+...+...|++++|...++++.... |+. ..+...|++++|...++.+.... +.+...+..++..+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 6677777777777777777766532 332 23455677788888888777654 4466777888888888888
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
+++|...++++.+..+. +..+|..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888876555 67778888888888888888888888888765 55677888888888888888888888888
Q ss_pred HHHCC
Q 037409 565 MAAEK 569 (603)
Q Consensus 565 ~~~~~ 569 (603)
+.+..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87654
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.76 E-value=2.9e-16 Score=154.45 Aligned_cols=346 Identities=12% Similarity=-0.025 Sum_probs=163.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc---chHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 87 LLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT---SGAFVVLGRILRSCFTPNTVTFNFLINGLCA 163 (603)
Q Consensus 87 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (603)
+...+.+.|++++|++.|+++.+.| ++..+..+...+...|+. ++|..+|++.... +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666677777777777766554 233344455555555655 6666666666543 34445555554444
Q ss_pred cC-----CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChH---HHHHHHHHHHHhcCCccCCChhhHHHHHHHHH
Q 037409 164 EG-----RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTL---VALKLFEEMVNEFGAICKPDVVTYNSIIDGLC 235 (603)
Q Consensus 164 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 235 (603)
.+ ++++|+..|++..+.| . ..++..|...|...+..+ ++.+.+...... .+...+..+...|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~------g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA------GYPEAGLAQVLLYR 152 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH------TCTTHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC------CCHHHHHHHHHHHH
Confidence 33 5666777777766654 2 225555566665544433 233334433332 23455556666666
Q ss_pred hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----C
Q 037409 236 KDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD---DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKD----G 308 (603)
Q Consensus 236 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 308 (603)
..+.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.| +++...+..+...|... +
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~ 231 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTP 231 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSC
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCC
Confidence 66655444443332222211223346666666666666 6667777777666665 34444444555555433 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-----Ch
Q 037409 309 KMDKVNRLLELMIQRGVNPDTVTYNSLMDG-F--CLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ-----KV 380 (603)
Q Consensus 309 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~ 380 (603)
++++|..+|++.. .| ++..+..+... + ...+++++|.+.|++..+.| +...+..|..+|. .| ++
T Consensus 232 d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 232 DEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 6666666666665 22 33444444444 2 34566666666666666554 4445555555554 33 55
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----CCCHHH
Q 037409 381 EDAVCLYREMLSERIRPSVITYNTLLSGLFQ----VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK----NGFVLE 452 (603)
Q Consensus 381 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 452 (603)
++|+..|++.. . .+...+..+...|.. ..++++|...|++..+.|. ......+...|.. ..+..+
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 56666555554 1 234444444444443 2255555555555544332 1222333333332 234555
Q ss_pred HHHHHHHHHHcC
Q 037409 453 AVQVFQAIRNCK 464 (603)
Q Consensus 453 a~~~~~~~~~~~ 464 (603)
|...|+...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 555555544433
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.75 E-value=2.3e-16 Score=143.59 Aligned_cols=224 Identities=11% Similarity=0.035 Sum_probs=195.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--CC----HHhH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV--PD----SFTF 437 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 437 (603)
...+..+...+...|++++|+..|+++.... .+...+..+...+...|++++|...++++...... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3457778889999999999999999999876 68889999999999999999999999998764221 12 5788
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE 517 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 517 (603)
..+...+...|++++|...++++.+.. |+ ...+.+.|++++|...++++....+. +...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 889999999999999999999999754 33 24566778899999999999987544 677889999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHH
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~ 597 (603)
|++++|+..++++++.. +.+..++..++.++...|++++|...++++++..+. ++..+..++.+|.+.|++++|.+.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999875 667889999999999999999999999999987654 789999999999999999999999
Q ss_pred HHhhc
Q 037409 598 FRHLL 602 (603)
Q Consensus 598 ~~~~l 602 (603)
+++.+
T Consensus 230 ~~~a~ 234 (258)
T 3uq3_A 230 LDAAR 234 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 39
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.75 E-value=4.2e-16 Score=153.34 Aligned_cols=188 Identities=14% Similarity=0.050 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHhhCCCCCCHHhHH
Q 037409 366 SYNILINANCKDQ---KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV----GNLGDALKLIDKMQLNDVVPDSFTFA 438 (603)
Q Consensus 366 ~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (603)
.+..|..+|...| +.++|++.|++..+.+.. +...+..+...|... +++++|+..|++.. . .++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4444444444444 444455555444444322 222223333333322 34555555555444 1 1222333
Q ss_pred HHHHH-H--HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-----ChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 439 TYIDG-L--CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-----RLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 439 ~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
.+... + ...+++++|...|++..+.+ ++..+..|...|. .| ++++|...|++.. . -+...+..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 33333 2 23445555555555544433 3444444444444 22 5555555555544 1 134444444
Q ss_pred HHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 511 IHWLCK----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 511 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 569 (603)
+..|.. ..++++|..+|++..+.| +......|+..|.. ..+.++|..+++++.+.|
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 444443 225555555555555443 12233344444432 234555555555555443
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=1.5e-15 Score=139.36 Aligned_cols=228 Identities=12% Similarity=0.095 Sum_probs=113.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHhHHHHHHHHHhC
Q 037409 370 LINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVP--DSFTFATYIDGLCKN 447 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 447 (603)
....+...|++++|+..|+++.+..+. +...+..+...+...|++++|+..++++......+ ....+..+...+...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 344444455555555555554443221 23344444445555555555555555554421111 112244555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
|++++|...++++.+.. +.+..++..++.+|...|++++|...+++..+..+. +...|..++..+...+++++|++.+
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555543 334455555556666666666666666655554333 4445555552333334666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCC------HHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 528 LDMEAKNCVPSEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSD------LSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 528 ~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+++++.. +.+...+..++.++...|+ +++|...++++.+.....|+ ...+..++.+|.+.|++++|.+++
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6655543 3344555555555555555 55555555555533211011 134555555666666666666665
Q ss_pred Hhh
Q 037409 599 RHL 601 (603)
Q Consensus 599 ~~~ 601 (603)
++.
T Consensus 245 ~~a 247 (272)
T 3u4t_A 245 KNI 247 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=6.2e-16 Score=135.99 Aligned_cols=199 Identities=10% Similarity=-0.037 Sum_probs=144.0
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHH
Q 037409 362 HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYI 441 (603)
Q Consensus 362 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (603)
++...+..+...+.+.|++++|+..|++.+...+ .+...+..+...+.+.|++++|+..+++..+..+. +...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence 3555566666667777777777777777666533 25566666777777777777777777777665432 455666666
Q ss_pred HHHHhC-----------CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHH
Q 037409 442 DGLCKN-----------GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTM 510 (603)
Q Consensus 442 ~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 510 (603)
..+... |++++|...+++..+.. |.+...+..+..++...|++++|+..|+++.+.+ .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 677777 99999999999998876 6678889999999999999999999999999877 588889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+.++...|++++|+..++++++.. |.+...+..++.++...|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999875 5678888999999999999999999888764
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.72 E-value=1.6e-15 Score=144.22 Aligned_cols=229 Identities=12% Similarity=0.040 Sum_probs=196.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 037409 365 YSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGN-LGDALKLIDKMQLNDVVPDSFTFATYIDG 443 (603)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (603)
..+..+...+.+.|++++|+..+++++..... +...|..+..++...|+ +++|+..++++....+. +...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45677778888899999999999998886443 67888889999999996 99999999999886544 77888899999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH-cCChhH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK-EGQMDK 522 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~ 522 (603)
+...|++++|+..|+++++.. +.+...|..+..++.+.|++++|+..++++++.++. +...|+.++.++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 999999999999999999877 678899999999999999999999999999998777 88899999999999 666588
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCC------
Q 037409 523 A-----NDLLLDMEAKNCVPSEVTFCTLLRGFVQNN--KKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDK------ 589 (603)
Q Consensus 523 A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------ 589 (603)
| +..++++++.. +.+...|..++.++...| ++++|.+.++++ +..+ .++..+..++++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p--~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH--SSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC--CCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC--CCHHHHHHHHHHHHHHhcccccc
Confidence 8 58899999875 567888999999999988 689999999888 4433 58889999999999874
Q ss_pred ---cHHHHHHHHHhh
Q 037409 590 ---KYRECLNQFRHL 601 (603)
Q Consensus 590 ---~~~eA~~~~~~~ 601 (603)
.+++|+++|+++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 369999999886
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=3.6e-15 Score=141.86 Aligned_cols=205 Identities=11% Similarity=-0.005 Sum_probs=102.6
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHH
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQ-YDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAF 136 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 136 (603)
..|++++|+..|++++..+|. +..+|+.+..++...|+ +++|+..|+++++.. +.+...|..+..++...|++++|+
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl 186 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQEL 186 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHH
Confidence 345555555555555555443 45555555555555554 555555555555543 334455555555555555555555
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-cCChHHH-----HHHHH
Q 037409 137 VVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR-TRNTLVA-----LKLFE 210 (603)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~ 210 (603)
..++++++..+. +..+|..+..++.+.|++++|+..|+++.+.. +.+..+|+.+..++.. .|..++| ++.|+
T Consensus 187 ~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 187 EFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 555555554333 44555555555555555555555555555442 2344455555555555 3333444 34555
Q ss_pred HHHHhcCCccCCChhhHHHHHHHHHhcC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 037409 211 EMVNEFGAICKPDVVTYNSIIDGLCKDG--FVDKAKELLLQMKDRNINPNVITYNSLICGFCCV 272 (603)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 272 (603)
+++.. .+.+...|+.+...+...| ++++|++.+.++ +. .+.+...+..++.+|.+.
T Consensus 265 ~Al~l----~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 265 EMIKL----VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHH----STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHH----CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 55544 2334445555555555544 345555555444 21 122344444455555443
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=3.4e-15 Score=136.96 Aligned_cols=252 Identities=11% Similarity=-0.051 Sum_probs=154.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHH
Q 037409 331 TYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPS--VITYNTLLSG 408 (603)
Q Consensus 331 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~ 408 (603)
.+......+...|++++|++.++++.+.. +.+...+..+..++...|++++|+..++++......++ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34445555666666666666666666653 22344566666666666777777776666665321111 2235666666
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHH
Q 037409 409 LFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTA 488 (603)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 488 (603)
+...|++++|+..+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776654322 44566667777777777777777777766553 44566666666333344577777
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 037409 489 CKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQ---MDKANDLLLDMEAKN-CVPS------EVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 489 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a 558 (603)
...|+++.+..+. +...+..++.++...|+ +++|+..++++++.. -.|+ ..++..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777775444 46666667777777776 677777777766541 0122 24566777777778888888
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 559 VVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
...++++++..+. ++.....+.......
T Consensus 241 ~~~~~~al~~~p~--~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPT--NKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTT--CHHHHHHHC------
T ss_pred HHHHHHHHhcCcc--HHHHHHHhhhhhccc
Confidence 8888888776554 666665555544443
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=1.3e-15 Score=140.07 Aligned_cols=248 Identities=12% Similarity=-0.054 Sum_probs=179.4
Q ss_pred ccCCCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcc
Q 037409 57 SGNITSNEAVYFFDCMIKMKPS---PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITS 133 (603)
Q Consensus 57 ~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (603)
...|++++|+..|++++...+. .+..+|..++..+...|++++|+..|+++++.+ +.+..++..++.++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 3468899999999999987432 247788999999999999999999999999875 667888999999999999999
Q ss_pred hHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037409 134 GAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMV 213 (603)
Q Consensus 134 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (603)
+|...++++.+..+. +..++..+...+...|++++|...|+++.+. .|+.......+..+...|++++|...+++..
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999887543 6778888889999999999999999998876 4554444445555567789999999998888
Q ss_pred HhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 214 NEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINP---NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGV 290 (603)
Q Consensus 214 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 290 (603)
... +++...+ .++..+...++.++|.+.+.......... +...+..+...|...|++++|...|++.....
T Consensus 172 ~~~----~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 172 EKS----DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHS----CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred hcC----CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 763 3444444 36667777778888888888776542110 14566666777777777777777777776553
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037409 291 QPDVVTFNAMINYNCKDGKMDKVNRLL 317 (603)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~a~~~~ 317 (603)
|+. +.....++...|++++|...+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 221 122233444555555555444
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.69 E-value=3.3e-15 Score=134.51 Aligned_cols=216 Identities=15% Similarity=0.082 Sum_probs=155.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
....+..+...+...|++++|...|+++..... .+...+..+...+...|++++|+..++++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 345566667777778888888888888776533 3567777788888888888888888888776543 26677778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
.+...|++++|...++++.+.. +.+...+..++..+.+.|++++|...++++.+..+. +...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888899999999988888765 557788888888899999999999999988886554 67788888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
|+..++++.+.. +.+..++..++.++...|++++|...++++.+..+. +...+..+..+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD--HMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT--CHHHHHHHTC--
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc--hHHHHHHHHHHH
Confidence 999999988875 566788888999999999999999999999886654 666655554433
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.68 E-value=1.3e-14 Score=131.27 Aligned_cols=204 Identities=13% Similarity=-0.059 Sum_probs=160.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDG 443 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (603)
...+..+...+...|++++|...|+++..... .+...+..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 45677777888888888888888888877532 35677888888888888888888888888765432 56777778888
Q ss_pred HHhCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH
Q 037409 444 LCKNGFVLEAVQVFQAIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK 522 (603)
Q Consensus 444 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 522 (603)
+...|++++|.+.++++.+.+. +.+...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888876222 335677788888888888888888888888876554 67778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 523 ANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 523 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
|...++++.+.. +.+...+..++..+...|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 888888888764 566777888888888888888888888888876554
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=3.1e-12 Score=129.88 Aligned_cols=152 Identities=15% Similarity=0.135 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---cchHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI---TSGAFV 137 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~ 137 (603)
...+-+..|++.+..+|. |..+|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 345677788888888775 89999999999999999999999999998874 7777888888888888888 999999
Q ss_pred HHHHHHHCCC-CCCHhhHHHHHHHHHhcCCH--------hHHHHHHHHHHh-cCC-CCc-HHHHHHHHHHHHh-------
Q 037409 138 VLGRILRSCF-TPNTVTFNFLINGLCAEGRI--------MEAARLFKKLNV-FAC-DPN-VVTFNTLINGLCR------- 198 (603)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~------- 198 (603)
+|++.+...+ +|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 9999988742 36788888887766665543 234467776554 455 443 4677777776543
Q ss_pred --cCChHHHHHHHHHHHH
Q 037409 199 --TRNTLVALKLFEEMVN 214 (603)
Q Consensus 199 --~g~~~~A~~~~~~~~~ 214 (603)
.++.+.+..+|+.++.
T Consensus 205 eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 2345566677777664
No 49
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=161.42 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKD---RNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAM 300 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 300 (603)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 301 INYNCKDGK-MDKVNRLLELMIQRGVNPDTVTYNSLMDG 338 (603)
Q Consensus 301 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 338 (603)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~ 245 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccCh
Confidence 666666655 34556666666666666666666655543
No 50
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.68 E-value=1.2e-12 Score=132.77 Aligned_cols=433 Identities=9% Similarity=0.040 Sum_probs=253.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC---HhHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR---IMEAAR 172 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~ 172 (603)
...+.+..|++.+..+ +.|...|..++..+.+.+.++.++.+|++++..- +.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3455666667776665 6788899999998888889999999999988873 4467788888888888888 999999
Q ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHhcCCh--------HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHH--------
Q 037409 173 LFKKLNVFA-CDPNVVTFNTLINGLCRTRNT--------LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLC-------- 235 (603)
Q Consensus 173 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 235 (603)
+|++..... .+|++..|...+....+.++. +...++|+.++..-+...+.+...|...+....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 999987753 137888888887766665543 334578888776543201234567877776543
Q ss_pred -hcCChhHHHHHHHHHhhCCCCCChhhHHH---HHHHHH----------hcCCHHHHHHHHHHHHHC--CC----C----
Q 037409 236 -KDGFVDKAKELLLQMKDRNINPNVITYNS---LICGFC----------CVDDWKEAKCLFIEMMDN--GV----Q---- 291 (603)
Q Consensus 236 -~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~----------~~~~~~~A~~~~~~~~~~--~~----~---- 291 (603)
..++++.+..+|++........-..+|.. +...+. ...+++.|...+.++... ++ +
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~ 284 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN 284 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence 34567888888888875311111223322 111110 011233344444433211 11 0
Q ss_pred -------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 292 -------P-----D---VVTFNAMINYNCKDG-------KMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRAR 349 (603)
Q Consensus 292 -------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 349 (603)
| + ...|...+..--..+ ..+.+..+|++++..- +-....|...+..+...|+.+.|.
T Consensus 285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~ 363 (679)
T 4e6h_A 285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVI 363 (679)
T ss_dssp TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHH
Confidence 0 0 123444443322222 1223445666666552 235666666666666667766775
Q ss_pred -HHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCC------------CHhhHHHHHH
Q 037409 350 -ELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER---------IRP------------SVITYNTLLS 407 (603)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------~~~------------~~~~~~~l~~ 407 (603)
++|+..... ++.+...+-..+....+.|++++|.++|++++... ..| ....|...+.
T Consensus 364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~ 442 (679)
T 4e6h_A 364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN 442 (679)
T ss_dssp HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence 777777654 23344445556666666777777777777766421 002 1234566666
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh
Q 037409 408 GLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKN-GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK 486 (603)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 486 (603)
...+.|+.+.|..+|....+.........|...+..-.+. ++.+.|..+|+..++. .+.+...+...+......|+.+
T Consensus 443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence 6666677777777777766541111222332222222233 3467777777776664 2445566666666666677777
Q ss_pred HHHHHHHHHhhCCCCC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 487 TACKLFHRLQHKGPIP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.|..+|++.....+.+ ....|..++..-...|+.+.+..+.+++.+.
T Consensus 522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777654321 2345666666666677777777777777765
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.1e-13 Score=126.76 Aligned_cols=225 Identities=11% Similarity=-0.035 Sum_probs=187.4
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHhhHH
Q 037409 328 DTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCK----DQKVEDAVCLYREMLSERIRPSVITYN 403 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 403 (603)
++..+..+...+...|++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56677788888888999999999999988843 55677788888888 899999999999988864 677788
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCChHHHHHH
Q 037409 404 TLLSGLFQ----VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK----NGFVLEAVQVFQAIRNCKCELRIETYNCL 475 (603)
Q Consensus 404 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 475 (603)
.+...|.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 899999999999888764 66778888888888 899999999999888765 56778888
Q ss_pred HHHHHh----CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 476 INGLCK----MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 476 ~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
...|.. .+++++|...|++..+.+ +...+..++..|.. .+++++|+..++++.+.+ +...+..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888888 889999999999888863 56778888888888 899999999999988864 2677788888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHCCC
Q 037409 548 GFVQ----NNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 548 ~~~~----~g~~~~a~~~~~~~~~~~~ 570 (603)
.|.. .+++++|.++++++.+.++
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888 8899999999999888764
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.68 E-value=3.3e-15 Score=134.53 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=162.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
....|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556777888899999999999999999876433 67888889999999999999999999999876 567899999999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++.+.. +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999987655 78889999999999999999999999999875 5678899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 558 VVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 558 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
|...++++.+..+. +...+..++.+|.+.|++++|.+.+++++
T Consensus 178 A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 178 ALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999999987654 78899999999999999999999999864
No 53
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.3e-16 Score=161.66 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHH
Q 037409 185 NVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNS 264 (603)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 264 (603)
-..+|+++|.+|++.|+.++|.++|++|.+....+..||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776665321111567777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 265 LICGFCCVDD-WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK 306 (603)
Q Consensus 265 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (603)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 7777777776 46677777777777777777777766654433
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.67 E-value=1.8e-13 Score=125.35 Aligned_cols=224 Identities=10% Similarity=-0.072 Sum_probs=160.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHCCCCCCHhhHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGAFVVLGRILRSCFTPNTVTFN 155 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (603)
++.++..+...+...|++++|+..|+++.+. .+..++..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777777788888888888888887763 355667777777777 777888888887777764 566777
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCChhhH
Q 037409 156 FLINGLCA----EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDVVTY 227 (603)
Q Consensus 156 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 227 (603)
.+...|.. .+++++|+..|++..+.+ +..++..+...+.. .+++++|++.|++..+.+ +...+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~------~~~a~ 149 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN------DGDGC 149 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT------CHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC------cHHHH
Confidence 77777777 777888888877777653 56677777777777 777778887777777642 45566
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 037409 228 NSIIDGLCK----DGFVDKAKELLLQMKDRNINPNVITYNSLICGFCC----VDDWKEAKCLFIEMMDNGVQPDVVTFNA 299 (603)
Q Consensus 228 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 299 (603)
..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 666677766 777777777777776653 45666667777777 777777777777777654 2556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 300 MINYNCK----DGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 300 l~~~~~~----~~~~~~a~~~~~~~~~~~ 324 (603)
+...|.+ .+++++|...+++..+.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 6666666 677777777777776664
No 55
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=3.9e-14 Score=128.19 Aligned_cols=200 Identities=13% Similarity=0.022 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGL 409 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 409 (603)
..+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++..... .+...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHH
Confidence 445555566666666666666666666543 22445555566666666666666666666655422 2455556666666
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHH
Q 037409 410 FQVGNLGDALKLIDKMQLNDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTA 488 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 488 (603)
...|++++|.+.++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 66666666666666665522222 33455555566666666666666666666544 34455666666666666666666
Q ss_pred HHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 489 CKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 489 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
...++++.+..+. +...+..++..+...|++++|.++++++.+.
T Consensus 195 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6666666654433 4555566666666666666666666666654
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.66 E-value=3.9e-14 Score=125.68 Aligned_cols=205 Identities=9% Similarity=-0.083 Sum_probs=163.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
+...+..+...+...|++++|...|+++..... .+...+..+...+...|++++|...++++..... .+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 456677788888889999999999988887533 3567788888888889999999999988876543 36677788888
Q ss_pred HHHhC-CCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 443 GLCKN-GFVLEAVQVFQAIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 443 ~~~~~-g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
.+... |++++|...++++.+.+. +.+...+..++.++...|++++|...++++.+..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 88888 999999999988887322 233677888888888899999999999888886554 677888888888889999
Q ss_pred hHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 521 DKANDLLLDMEAKNCV-PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
++|...++++.+.. + .+...+..+...+...|+.+++..+++.+.+..+.
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 99999998888765 4 56777777788888889999888888888765543
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=6.1e-14 Score=124.41 Aligned_cols=203 Identities=9% Similarity=-0.072 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHH
Q 037409 80 GMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLIN 159 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 159 (603)
+...|..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|...++++.+..+. +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 56677777888888888888888888877664 455667777777777778888888877777776433 5667777777
Q ss_pred HHHhc-CCHhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 160 GLCAE-GRIMEAARLFKKLNVFACDP-NVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 160 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|+..++++.+. .+.+...+..+...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----QPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHc
Confidence 77777 77777777777776622222 2456667777777777777777777777765 244566667777777777
Q ss_pred CChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 238 GFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777777665432135555666666666677777777777666543
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.65 E-value=3.7e-14 Score=121.35 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=119.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+...|..+...|...|++++|++.|++..+..+. +...+..+..++...|++++|...++.+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5566777777777777777777777777665433 56667777777777777777777777776654 446666777777
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
.+...++++.|...+.+..+..+. +...+..++.++...|++++|++.|+++++.+ |.+..++..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777777777777777776554 56677777777777777777777777777764 4566677777777777777777
Q ss_pred HHHHHHHHHHCC
Q 037409 558 VVVLLHKMAAEK 569 (603)
Q Consensus 558 a~~~~~~~~~~~ 569 (603)
|.+.++++++..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 777777777643
No 59
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=1.5e-14 Score=132.99 Aligned_cols=223 Identities=12% Similarity=-0.017 Sum_probs=114.5
Q ss_pred HhcCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHh
Q 037409 92 AKNKQYDTVVSLFKRLNSNGL---FPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM 168 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 168 (603)
...|++++|+..|+++.+... +.+..++..++..+...|++++|...++++.+..+. +..++..+...+...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHH
Confidence 345666677777776665421 112345555666666666666666666666665332 4556666666666666666
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 037409 169 EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLL 248 (603)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 248 (603)
+|+..|++..+.. +.+..++..+...+...|++++|++.|+++.+.. |+.......+..+...|++++|...++
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-----PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666665542 3345556666666666666666666666666542 222222233333344555666666665
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 249 QMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQ---PDVVTFNAMINYNCKDGKMDKVNRLLELMIQR 323 (603)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 323 (603)
...... +++...+ .++..+...++.++|...+++....... .+...+..+...+.+.|++++|...++++...
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 544431 2222222 2444445555555555555554432100 00233444444444444444444444444433
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.63 E-value=2.5e-13 Score=126.66 Aligned_cols=218 Identities=11% Similarity=0.028 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 037409 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAK-------NKQY-------DTVVSLFKRLNS-NGLFPDLFVLNLLINCLC 127 (603)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 127 (603)
+.|+..|++++...|. ++..|..++..+.. .|++ ++|..+|+++++ .. +.+...+..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 6899999999998765 88999999888764 4776 899999999987 33 556678888888888
Q ss_pred hcCCcchHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hcCChHHH
Q 037409 128 KMGITSGAFVVLGRILRSCFTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLC-RTRNTLVA 205 (603)
Q Consensus 128 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 205 (603)
..|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999998886433 333 78888888888889999999998888764 334445544333322 36888888
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRN-INP--NVITYNSLICGFCCVDDWKEAKCLF 282 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 282 (603)
.++|+++++. .|.+...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.++|..++
T Consensus 189 ~~~~~~al~~----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 189 FKIFELGLKK----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHH----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHh----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888876 35567778888888888888888888888888752 343 3557777777777788888888888
Q ss_pred HHHHHC
Q 037409 283 IEMMDN 288 (603)
Q Consensus 283 ~~~~~~ 288 (603)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=4.5e-15 Score=145.32 Aligned_cols=118 Identities=14% Similarity=0.101 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCcch
Q 037409 296 TFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDT----VTYNSLMDGFCLVGRISRARELFVSMVSK----G-CRHDVYS 366 (603)
Q Consensus 296 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 366 (603)
.+..+...+...|++++|...++++.+.... +. ..+..+...+...|++++|.+.++++.+. + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4445556677777777777777777766332 22 35666667777777777777777776543 1 0112244
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHhcCC
Q 037409 367 YNILINANCKDQKVEDAVCLYREMLSER-----IRPSVITYNTLLSGLFQVGN 414 (603)
Q Consensus 367 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~ 414 (603)
+..+...|...|++++|...++++.... ......++..+...|...|+
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence 5555666666666666666666654420 01112344455555555555
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.62 E-value=3.2e-14 Score=140.89 Aligned_cols=213 Identities=10% Similarity=-0.057 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHH
Q 037409 380 VEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL-GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQ 458 (603)
Q Consensus 380 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 458 (603)
+++++..+++..... +.+...+..+...+...|++ ++|+..|++..+..+. +...+..+...|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555444332 23455566666666666666 6666666666554322 45566666666666677777777766
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhC---------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc--------CChh
Q 037409 459 AIRNCKCELRIETYNCLINGLCKM---------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE--------GQMD 521 (603)
Q Consensus 459 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 521 (603)
++.+.. |+...+..+..++... |++++|...++++.+..+. +...|..++.+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 666543 3456666666666666 7777777777777665544 566677777777666 6777
Q ss_pred HHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 522 KANDLLLDMEAKNCV---PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+|+..|+++++.. + .+...+..++.+|...|++++|...++++.+..+. +...+..++.++...|++++|++.+
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA--WPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777653 3 36666777777777777777777777777765543 6666677777777777777777655
Q ss_pred Hh
Q 037409 599 RH 600 (603)
Q Consensus 599 ~~ 600 (603)
++
T Consensus 316 ~~ 317 (474)
T 4abn_A 316 GK 317 (474)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.3e-14 Score=141.77 Aligned_cols=302 Identities=13% Similarity=0.044 Sum_probs=158.1
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPD----VVTFNAMINYNCKDGKMDKVNRLLELMIQR----GVNP-D 328 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~ 328 (603)
....+......+...|++++|...|++..+.. +.+ ...+..+...+...|++++|...++++... +..| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 44455556666667777777777777666653 122 234555666666666666666666665432 1111 1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037409 329 TVTYNSLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLS 407 (603)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 407 (603)
..++..+...+...|++++|...++++.+.... .+. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 234445555555566666666666555554100 000 000123344444
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHhh----CCCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 037409 408 GLFQVGN--------------------LGDALKLIDKMQL----NDVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 408 ~~~~~~~--------------------~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
.+...|+ +++|...+++... .+..+ ...++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4444444 5555555444321 11011 123455555666666666666666666553
Q ss_pred cCC-CC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 463 CKC-EL----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 463 ~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
... .+ ...++..++.+|...|++++|...+++..+.... ++ ..++..++..+...|++++|...++++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 01 1235666666677777777777777666542111 01 34556666667777777777777766654
Q ss_pred CCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCHHHHHHHHHHHHcCCcH
Q 037409 533 KNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVSDLSLSSKVVDLLSKDKKY 591 (603)
Q Consensus 533 ~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~ 591 (603)
... ..+ ..++..++.+|...|++++|...++++.+. +..+....++..++.++...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 310 011 345566677777777777777777766542 11112244555666666665544
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=141.60 Aligned_cols=270 Identities=13% Similarity=0.036 Sum_probs=180.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHhhH
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVSKGCRHD----VYSYNILINANCKDQKVEDAVCLYREMLSE----RIRP-SVITY 402 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~ 402 (603)
+......+...|++++|...|+++.+... .+ ...+..+...+...|++++|...++++... +..| ...++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 33444444555555555555555544421 11 123444455555555555555555544321 1111 13345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCC-----CCCHHhHHHHHHHHHhCCC--------------------HHHHHHHH
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDV-----VPDSFTFATYIDGLCKNGF--------------------VLEAVQVF 457 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 457 (603)
..+...+...|++++|...+++...... .....++..+...+...|+ +++|...+
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6666677777777777777776543210 0113467778888888999 99999999
Q ss_pred HHHHHc----CC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----HhHHHHHHHHHHHcCChhHHHHHH
Q 037409 458 QAIRNC----KC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VVTCSTMIHWLCKEGQMDKANDLL 527 (603)
Q Consensus 458 ~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~ 527 (603)
++..+. +. +....++..+...|...|++++|...+++..+.... ++ ..++..++.++...|++++|+..+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 887642 11 122457888999999999999999999988763111 12 337888999999999999999999
Q ss_pred HHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHcCCcHHHHHHHH
Q 037409 528 LDMEAKNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD----LSLSSKVVDLLSKDKKYRECLNQF 598 (603)
Q Consensus 528 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~eA~~~~ 598 (603)
+++++... .++ ..++..++..|...|++++|...++++.+......+ ...+..++.+|.+.|++++|.+++
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99875420 111 457788999999999999999999998764222112 568889999999999999999999
Q ss_pred Hhhc
Q 037409 599 RHLL 602 (603)
Q Consensus 599 ~~~l 602 (603)
++.+
T Consensus 331 ~~al 334 (406)
T 3sf4_A 331 EKHL 334 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 65
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.60 E-value=2.6e-13 Score=116.03 Aligned_cols=163 Identities=12% Similarity=0.008 Sum_probs=92.9
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...|..+...+...|++++|+..|++..+.. |.+..++..++.+|.+.|++++|...+.......+. +...+..++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4455555555556666666666666655544 445555555666666666666666666655554433 44555555555
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRE 593 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 593 (603)
+...++++.|...++++.+.. +.+...+..++.++.+.|++++|++.++++++..+. ++..+..++.+|.+.|++++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHHHHHHHHHCCCHHH
Confidence 555666666666666555543 344555555566666666666666666665554443 55555556666666666666
Q ss_pred HHHHHHhh
Q 037409 594 CLNQFRHL 601 (603)
Q Consensus 594 A~~~~~~~ 601 (603)
|++.|++.
T Consensus 160 A~~~~~~a 167 (184)
T 3vtx_A 160 AVKYFKKA 167 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.59 E-value=1.8e-14 Score=136.66 Aligned_cols=274 Identities=12% Similarity=0.047 Sum_probs=147.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCcchH
Q 037409 297 FNAMINYNCKDGKMDKVNRLLELMIQRGVNPD----TVTYNSLMDGFCLVGRISRARELFVSMVSK----GCR-HDVYSY 367 (603)
Q Consensus 297 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~ 367 (603)
+......+...|++++|...++++.+.... + ...+..+...+...|++++|.+.++++... +.. .....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 344455566666666666666666655322 2 234555555666666666666666655432 100 012233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHh
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV-PDSFTFATYIDGLCK 446 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 446 (603)
..+...+...|++++|...+++...... ..+.. ....++..+...+..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHH-------------------------------HhcCchHHHHHHHHHHHHHHH
Confidence 4444444445555555555444332100 00000 001234444444555
Q ss_pred CCC--------------------HHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 447 NGF--------------------VLEAVQVFQAIRNC----K-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 447 ~g~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
.|+ +++|...+++..+. + .+.....+..+...+...|++++|...+++..+....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 55555555554321 1 0112345666667777777777777777766542110
Q ss_pred -CC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 502 -PD----VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 502 -p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
++ ..++..++..+...|++++|...++++++... .++ ..++..++..+...|++++|...++++.+....
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11 22566777777777777777777777664310 011 445667777777788888887777777643211
Q ss_pred C----CCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 572 V----SDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 572 ~----~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
. .....+..++.+|.+.|++++|..++++.+
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 0 124466677777788888888887777654
No 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=3.5e-14 Score=138.92 Aligned_cols=279 Identities=12% Similarity=0.051 Sum_probs=168.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCC
Q 037409 258 NVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV----VTFNAMINYNCKDGKMDKVNRLLELMIQR----G-VNPD 328 (603)
Q Consensus 258 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~ 328 (603)
....+..+...+...|++++|+..|+++.+.. +.+. ..+..+...+...|++++|...++++.+. + .+..
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 34555667788899999999999999998874 2233 46788888999999999999999988754 1 1223
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCcchHHHHHHHHHhcCC-----------------hHHHHHH
Q 037409 329 TVTYNSLMDGFCLVGRISRARELFVSMVSK----G-CRHDVYSYNILINANCKDQK-----------------VEDAVCL 386 (603)
Q Consensus 329 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~ 386 (603)
..++..+...|...|++++|.+.++++.+. + .+....++..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 456778888999999999999999988764 1 11123467778888888888 6666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 037409 387 YREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCE 466 (603)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 466 (603)
+++.... ...... .......+..+...+...|++++|...+++..+....
T Consensus 206 ~~~al~~----------------------------~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 206 YQENLKL----------------------------MRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHH----------------------------HHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHHcCC--HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6654431 111100 0001123334444444555555555555444321100
Q ss_pred -C----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-----CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--
Q 037409 467 -L----RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-----PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-- 534 (603)
Q Consensus 467 -~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 534 (603)
. ....+..+..+|...|++++|...+++..+.... ....++..++.++...|++++|..+++++++..
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 0 1124555555666666666666666555442110 013445556666666666666666666655431
Q ss_pred --CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 535 --CV-PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 535 --~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
.. ....++..++.+|...|++++|...++++.+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 0123455666666666666666666666664
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=1.5e-12 Score=121.28 Aligned_cols=238 Identities=9% Similarity=0.002 Sum_probs=184.2
Q ss_pred hhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCcchHHHHHHHHHh-------cCCh-------HHHHHHH
Q 037409 330 VTYNSLMDGFCLV----GRI----SRARELFVSMVSKGCRHDVYSYNILINANCK-------DQKV-------EDAVCLY 387 (603)
Q Consensus 330 ~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~A~~~~ 387 (603)
..|...+....+. ++. ++|...|++++... +.+...|..++..+.. .|++ ++|..+|
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 4566666654443 243 68888999998863 4466778877777653 5776 8999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 037409 388 REMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSF-TFATYIDGLCKNGFVLEAVQVFQAIRNCKCE 466 (603)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 466 (603)
++.+..-.+.+...|..++..+...|++++|..+|+++.+..+. +.. .+..++..+.+.|++++|..+|+++.+.. +
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 165 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R 165 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence 99987312235668889999999999999999999999875322 233 78888888889999999999999998765 4
Q ss_pred CChHHHHHHHHHHH-hCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCC--CHHHH
Q 037409 467 LRIETYNCLINGLC-KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-CVP--SEVTF 542 (603)
Q Consensus 467 ~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~ 542 (603)
.+...|...+.... ..|++++|..+|+++++..+. +...|..++..+...|++++|..+|+++++.. ++| ....|
T Consensus 166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~ 244 (308)
T 2ond_A 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244 (308)
T ss_dssp CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 55666655544433 369999999999999887655 78889999999999999999999999999863 344 46678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
..++..+.+.|+.++|..+++++.+..+.
T Consensus 245 ~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 245 ARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 88888888999999999999999987665
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.56 E-value=4.1e-13 Score=129.74 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=154.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC----CCHHhHH
Q 037409 370 LINANCKDQKVEDAVCLYREMLSE----RIRP-SVITYNTLLSGLFQVGNLGDALKLIDKMQLND--VV----PDSFTFA 438 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~----~~~~~~~ 438 (603)
....+...|++++|+..|++.... +..+ ...++..+...|...|++++|+..+++..+.. .. ....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566777777777777777653 1111 23456777777778888888888877764321 11 1134566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCC-C----ChHHHHHHHHHHHhCCChhHHHHHHHHHhh-----CCCCCCHhHHH
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNCKCE-L----RIETYNCLINGLCKMGRLKTACKLFHRLQH-----KGPIPDVVTCS 508 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 508 (603)
.+...|...|++++|...+++..+.... + ...++..++.+|...|++++|...+++..+ ........++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7777888888888888888877643111 1 124677888888888888888888888776 22122456678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAK----NCVPSEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
.++.++...|++++|...++++++. +-+.....+..++..+...|+ +++|..++++. +..+.....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8888888888888888888887754 111112235667778888888 66666666655 2221345577788
Q ss_pred HHHHHcCCcHHHHHHHHHhhc
Q 037409 582 VDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 582 ~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.+|.+.|++++|..++++.+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 888888888888888888754
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.56 E-value=5.8e-14 Score=133.15 Aligned_cols=202 Identities=15% Similarity=0.070 Sum_probs=113.9
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPG---MTSFTILLTMLAKNKQYDTVVSLFKRLNSN----GL-FPDLFVLNL 121 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 121 (603)
++.+......|++++|+..|++++...|... ...+..++..+...|++++|+..++++... +. +....++..
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4555555567888888888888887765421 356777788888888888888888876542 11 112345566
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHhcCC--------------------HhHHHHHHHH
Q 037409 122 LINCLCKMGITSGAFVVLGRILRSCFT-PN----TVTFNFLINGLCAEGR--------------------IMEAARLFKK 176 (603)
Q Consensus 122 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~ 176 (603)
+...+...|++++|...++++.+.... ++ ..++..+...+...|+ +++|...+++
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 168 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE 168 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 666777777777777777666543111 11 2255566666666666 6666666655
Q ss_pred HHhc----CCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCc--cCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 037409 177 LNVF----ACD-PNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAI--CKPDVVTYNSIIDGLCKDGFVDKAKELLLQ 249 (603)
Q Consensus 177 ~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 249 (603)
.... +.. ....++..+...+...|++++|.+.+++..+..... ......++..+...+...|++++|...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 248 (338)
T 3ro2_A 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK 248 (338)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4321 100 112245555556666666666666666655432000 000012444455555555555555555554
Q ss_pred Hh
Q 037409 250 MK 251 (603)
Q Consensus 250 ~~ 251 (603)
..
T Consensus 249 al 250 (338)
T 3ro2_A 249 TL 250 (338)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.7e-13 Score=135.61 Aligned_cols=216 Identities=11% Similarity=-0.046 Sum_probs=147.3
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT-SGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
.+++++..+++..... +.+...+..++..+...|++ ++|...|+++++..+. +..+|..+...|...|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3566666666665543 44666677777777777777 7777777777766433 5667777777777777777777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc--------
Q 037409 175 KKLNVFACDPNVVTFNTLINGLCRT---------RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD-------- 237 (603)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 237 (603)
++..+. .|+..++..+..++... |++++|++.|+++++. .+.+...|..+..+|...
T Consensus 161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence 777665 45566677777777777 7777777777777776 345566777777777776
Q ss_pred CChhHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 238 GFVDKAKELLLQMKDRNIN--PNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNR 315 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 315 (603)
|++++|++.|++..+.... .+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777664210 266677777777777777777777777776653 3355566777777777777777776
Q ss_pred HHHHH
Q 037409 316 LLELM 320 (603)
Q Consensus 316 ~~~~~ 320 (603)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 55444
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.54 E-value=3.3e-13 Score=138.73 Aligned_cols=162 Identities=12% Similarity=0.014 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..++.+...+.+.|++++|++.|++.++.. +.+..++..+..+|.+.|++++|+..|+++++.++. +...|..++.++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l 87 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444555555555555555555554443 334445555555555555555555555555554333 444555555555
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 594 (603)
...|++++|++.|+++++.+ +.+...+..++.+|.+.|++++|++.++++++..+. +...+..++.+|...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHhhhhhHHHhcccHHHH
Confidence 55555555555555555443 334444555555555555555555555555544332 445555555555555555555
Q ss_pred HHHHHhh
Q 037409 595 LNQFRHL 601 (603)
Q Consensus 595 ~~~~~~~ 601 (603)
.+.+++.
T Consensus 165 ~~~~~ka 171 (723)
T 4gyw_A 165 DERMKKL 171 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.51 E-value=4.4e-14 Score=132.39 Aligned_cols=242 Identities=14% Similarity=0.045 Sum_probs=105.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhH
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSK-------GCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITY 402 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 402 (603)
.++..+...+...|++++|...++++.+. ..+.....+..+...|...|++++|...++++....
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------- 99 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-------- 99 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------
Confidence 34555555566666666666666665542 111122334444555555555555555555444320
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCChHHHHHH
Q 037409 403 NTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC------KC-ELRIETYNCL 475 (603)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 475 (603)
+.............+..+...+...|++++|...++++.+. +. +.....+..+
T Consensus 100 --------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 159 (311)
T 3nf1_A 100 --------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159 (311)
T ss_dssp --------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 00000000112233444444455555555555555444432 11 1123445555
Q ss_pred HHHHHhCCChhHHHHHHHHHhhC------CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-------CCCC---
Q 037409 476 INGLCKMGRLKTACKLFHRLQHK------GPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN-------CVPS--- 538 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~--- 538 (603)
+..+...|++++|...++++.+. +..| ...++..++.++...|++++|++.++++++.. ..+.
T Consensus 160 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 239 (311)
T 3nf1_A 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 239 (311)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH
Confidence 55555555555555555555442 1011 23345555555666666666666665555420 0111
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 539 ----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 539 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
...+..+...+...+.+.++...++......+ .....+..++.+|.+.|++++|.+++++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP--TVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11112222233334444555555555544322 24556666666666666666666666654
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=1.5e-12 Score=111.30 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 037409 400 ITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGL 479 (603)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (603)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4455566667777777777777777665432 255666666777777777777777777776654 44566677777777
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+.. +.+..++..++..+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777777665443 56666677777777777777777777776654 445666677777777777777777
Q ss_pred HHHHHHHHCCC
Q 037409 560 VLLHKMAAEKL 570 (603)
Q Consensus 560 ~~~~~~~~~~~ 570 (603)
..++++.+..+
T Consensus 165 ~~~~~~~~~~~ 175 (186)
T 3as5_A 165 PHFKKANELDE 175 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHcCC
Confidence 77777665433
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.50 E-value=2.6e-12 Score=124.06 Aligned_cols=235 Identities=8% Similarity=-0.093 Sum_probs=114.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhhHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDN----GVQP-DVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVN-P-----DTVTYN 333 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~~ 333 (603)
....+...|++++|...|++..+. +-++ ...++..+...+...|++++|...+++..+.... + ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444555666666666666666543 1011 1234555555556666666666655555432100 0 112344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+...|...|++++|.+.++++.+.... .+. .....++..+...|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQP-------------------------------QLMGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCCh-------------------------------HHHHHHHHHHHHHHHHC
Confidence 4455555555555555555554432000 000 00012344445555555
Q ss_pred CCHHHHHHHHHHHhhC----CC-CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCCChHHHHHHHHHHHhCC
Q 037409 413 GNLGDALKLIDKMQLN----DV-VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g 483 (603)
|++++|+..+++.... +. +....++..+...+...|++++|...+++..+. +.+.....+..+...+...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 5555555555554331 11 222344555555566666666666666554432 11112223455666666666
Q ss_pred C---hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 484 R---LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 484 ~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
+ +++|..++++... .......+..++..|...|++++|...++++.+
T Consensus 318 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 5555555555421 111233555666777777777777777777654
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=3.8e-12 Score=112.97 Aligned_cols=208 Identities=9% Similarity=-0.041 Sum_probs=152.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHH
Q 037409 363 DVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYID 442 (603)
Q Consensus 363 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (603)
++..+......+...|++++|+..|++.+....+++...+..+..++...|++++|+..+++..+..+. +...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 556777788888888999999999988888655457777777888888889999999998888876433 5667778888
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCh-------HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---HhHHHHHHH
Q 037409 443 GLCKNGFVLEAVQVFQAIRNCKCELRI-------ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---VVTCSTMIH 512 (603)
Q Consensus 443 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 512 (603)
.+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...|..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 8888899999999988888765 4455 55777888888888899999998888875 333 456777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
++...| ...++++...+ ..+...+.... ....+.+++|...++++.+..+. ++.+...+..+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~--~~~~~~~l~~i 223 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN--RTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHH
Confidence 775543 44556666654 34444443332 34456689999999999987665 66666655544
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.48 E-value=1.8e-11 Score=117.79 Aligned_cols=235 Identities=12% Similarity=0.052 Sum_probs=140.7
Q ss_pred hhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHH
Q 037409 50 FLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMT----SFTILLTMLAKNKQYDTVVSLFKRLNSNGL-FPDL----FVLN 120 (603)
Q Consensus 50 ~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~ 120 (603)
++.+.+....|++++|+..+++++...|..+.. +++.+...+...|++++|...++++..... ..+. .++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344555556788889999988888776554432 456677778888888888888888765310 1122 2345
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHCC----CC--C-CHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCC---C-cHHHH
Q 037409 121 LLINCLCKMGITSGAFVVLGRILRSC----FT--P-NTVTFNFLINGLCAEGRIMEAARLFKKLNVFACD---P-NVVTF 189 (603)
Q Consensus 121 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~ 189 (603)
.+...+...|++++|...+++..... .. | ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 56667777888888887777766531 11 1 2335555667777778888887777776543211 1 12345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHH-----HHHHHHHhcCChhHHHHHHHHHhhCCCCCC---hhh
Q 037409 190 NTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYN-----SIIDGLCKDGFVDKAKELLLQMKDRNINPN---VIT 261 (603)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~ 261 (603)
..+...+...|++++|...+++....... ..+...+. ..+..+...|++++|...+++.......+. ...
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGN--GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 66667777777777777777777654211 01111111 222335667777777777776654322111 113
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 262 YNSLICGFCCVDDWKEAKCLFIEMM 286 (603)
Q Consensus 262 ~~~l~~~~~~~~~~~~A~~~~~~~~ 286 (603)
+..+...+...|++++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455566666666666666666554
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.48 E-value=2.9e-13 Score=126.73 Aligned_cols=248 Identities=13% Similarity=0.021 Sum_probs=136.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------
Q 037409 292 PDVVTFNAMINYNCKDGKMDKVNRLLELMIQR-------GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSK------ 358 (603)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 358 (603)
.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|.+.++++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34567888999999999999999999999873 22334567888899999999999999999988764
Q ss_pred CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhH
Q 037409 359 GC-RHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTF 437 (603)
Q Consensus 359 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (603)
+. +.....+..+...+...|++++|...++++.... +.............+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQL 156 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHH
Confidence 11 1123455566666666677777776666655420 000000001112233
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC-------CCCC
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNC------K-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG-------PIPD 503 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~ 503 (603)
..+...+...|++++|...++++.+. + .+....++..++.+|...|++++|...++++.+.. ..+.
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 236 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE 236 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 34444445555555555555544432 1 11123345555555556666666666655555320 0111
Q ss_pred -------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 504 -------VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 504 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
...+..+...+...+.+.++...+++..... +....++..++.+|.+.|++++|.++++++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112222333344555566666666666542 334556777788888888888888888877653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.47 E-value=7e-12 Score=120.79 Aligned_cols=229 Identities=11% Similarity=0.042 Sum_probs=160.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CC-CC-CHHhHH
Q 037409 370 LINANCKDQKVEDAVCLYREMLSERI-RPS----VITYNTLLSGLFQVGNLGDALKLIDKMQLN----DV-VP-DSFTFA 438 (603)
Q Consensus 370 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 438 (603)
....+...|++++|+..|+++..... .++ ..++..+...|...|+++.|...+++.... +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456677888888888887765311 112 345677777888888888888888776532 11 11 234566
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhCCChhHHHHHHHHHhh-----CCCCCCHhHHH
Q 037409 439 TYIDGLCKNGFVLEAVQVFQAIRNC----KCE-LRIETYNCLINGLCKMGRLKTACKLFHRLQH-----KGPIPDVVTCS 508 (603)
Q Consensus 439 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 508 (603)
.+...|...|++++|...+++..+. +.+ ....++..++.+|...|++++|...+++..+ ..+. ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 7788888889999998888877652 111 1235678888888999999999999988877 4443 366788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNC---VP-SEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
.++.++.+.|++++|...+++.++... .+ ....+..+...+...|+ +.+|..++++ .+..+.....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 888889999999999999998886421 12 23445666777777888 6777766665 22221345577788
Q ss_pred HHHHHcCCcHHHHHHHHHhhc
Q 037409 582 VDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 582 ~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..|...|++++|..++++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999888764
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=3.7e-12 Score=130.97 Aligned_cols=166 Identities=14% Similarity=0.083 Sum_probs=131.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+..+++.+...|.+.|++++|++.|++..+.... +...+..+..+|.+.|++++|+..|+++++.. +.+...|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3566777778888888888888888887765433 56677778888888888888888888888765 556788888888
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 557 (603)
+|.+.|++++|++.|++.++.++. +...|+.++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888887665 67788888888888888888888888888865 4567778888888888888888
Q ss_pred HHHHHHHHHH
Q 037409 558 VVVLLHKMAA 567 (603)
Q Consensus 558 a~~~~~~~~~ 567 (603)
|.+.++++++
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.45 E-value=8.1e-12 Score=110.83 Aligned_cols=194 Identities=10% Similarity=-0.030 Sum_probs=150.9
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHH
Q 037409 397 PSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLI 476 (603)
Q Consensus 397 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 476 (603)
.++..+......+...|++++|+..|++..+....++...+..+..++...|++++|...+++..+.. +.+...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888899999999999999998876654677777778888999999999999999988765 55778889999
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCH-------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDV-------VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP--SEVTFCTLLR 547 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 547 (603)
.+|...|++++|...+++..+..+. +. ..|..++..+...|++++|++.++++++.+ +. +...+..++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999887554 45 457888888889999999999999998864 33 4567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+|...| ..+++++...+.. +...+... .....|.+++|+.++++.+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~--~~~~~~~~--~~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS--NKEKYASE--KAKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT--CHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC--CHHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 885544 4445666655433 44444333 3455677899999998764
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.44 E-value=1.1e-11 Score=105.88 Aligned_cols=163 Identities=12% Similarity=0.071 Sum_probs=121.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+. +...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 345566667777788888888887776544 456777777788888888888888888887776444 667777777788
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 594 (603)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+..+. ++..+..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--EGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888877764 556777777788888888888888888887776543 677777888888888888888
Q ss_pred HHHHHhhc
Q 037409 595 LNQFRHLL 602 (603)
Q Consensus 595 ~~~~~~~l 602 (603)
.+++++.+
T Consensus 164 ~~~~~~~~ 171 (186)
T 3as5_A 164 LPHFKKAN 171 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777653
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.43 E-value=8.6e-11 Score=113.00 Aligned_cols=161 Identities=10% Similarity=-0.042 Sum_probs=73.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCH----hhHHHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGVQPDVV----TFNAMINYNCKDGKMDKVNRLLELMIQRGVN-PDT----VTYNSL 335 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~l 335 (603)
....+...|++++|...+++........+.. .+..+...+...|++++|...+++....... .+. .++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3344555666666666666665543111211 3344445555566666666666655432110 011 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC----CHhhHHH
Q 037409 336 MDGFCLVGRISRARELFVSMVSK----GCR--H-DVYSYNILINANCKDQKVEDAVCLYREMLSERIRP----SVITYNT 404 (603)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~ 404 (603)
...+...|++++|.+.+++.... +.. | ....+..+...+...|++++|...+++........ ....+..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 44555556666666555555442 110 1 11223334444555555555555555544321110 1123334
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 037409 405 LLSGLFQVGNLGDALKLIDKM 425 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~ 425 (603)
+...+...|++++|...+++.
T Consensus 180 la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 444444455555555555444
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=5.7e-11 Score=114.38 Aligned_cols=234 Identities=9% Similarity=-0.055 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----C-CCHhhHH
Q 037409 265 LICGFCCVDDWKEAKCLFIEMMDNGV-QPD----VVTFNAMINYNCKDGKMDKVNRLLELMIQRGV-----N-PDTVTYN 333 (603)
Q Consensus 265 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 333 (603)
....+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+++..+... . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566666666666666654310 011 23455555566666666666666655543210 0 0123444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037409 334 SLMDGFCLVGRISRARELFVSMVSKGCR-HDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV 412 (603)
Q Consensus 334 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 412 (603)
.+...|...|++++|.+.++++.+.... ++. .....++..+...|...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQND-------------------------------RFIAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHC
Confidence 5555555666666666655555442000 000 00112333444444444
Q ss_pred CCHHHHHHHHHHHhh-----CCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCChHHHHHHHHHHHhCC
Q 037409 413 GNLGDALKLIDKMQL-----NDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCK----CELRIETYNCLINGLCKMG 483 (603)
Q Consensus 413 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g 483 (603)
|++++|+..+++... ..+. ...++..+...+.+.|++++|...+++..+.. .+.....+..+...+...+
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~ 314 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 444444444444433 2111 23444455555555555555555555554321 1112223344444444455
Q ss_pred C---hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 484 R---LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 484 ~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
+ +.+|...+++... .......+..++..|...|++++|...++++.+
T Consensus 315 ~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 315 DERKIHDLLSYFEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 4455555444211 011123444556666666666666666666554
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=5.4e-12 Score=116.16 Aligned_cols=228 Identities=14% Similarity=0.032 Sum_probs=159.4
Q ss_pred HhcCChHHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCC-CHHhHHHH
Q 037409 375 CKDQKVEDAVCLYREMLSE-------RIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN------DVVP-DSFTFATY 440 (603)
Q Consensus 375 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l 440 (603)
...|++++|+..|++.++. ..+....++..+...+...|++++|+..++++... +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766552 22234567888899999999999999999988653 2222 35678888
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHc------C-CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC-----CC-CC-CHhH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNC------K-CELRIETYNCLINGLCKMGRLKTACKLFHRLQHK-----GP-IP-DVVT 506 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p-~~~~ 506 (603)
...+...|++++|...++++.+. . .+....++..++.+|...|++++|...++++.+. +. .| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999998754 1 1334678889999999999999999999998875 11 22 3567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC-------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--H-CCC-CCCC
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAK-------NC-VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA--A-EKL-VVSD 574 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~-~~~~ 574 (603)
+..++.++...|++++|+.+++++++. .. +.....+..+...+...+....+..+.+... + .+. .+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999998864 11 1223344455545544444333322221111 1 111 1134
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 575 LSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 575 ~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
...+..++.+|.+.|++++|..++++.+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678889999999999999999999875
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.36 E-value=6e-11 Score=109.41 Aligned_cols=175 Identities=9% Similarity=-0.061 Sum_probs=94.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHH
Q 037409 344 RISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE----RIRPS-VITYNTLLSGLFQVGNLGDA 418 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a 418 (603)
++++|.+.|.++ ...|...|++++|...|++.... +.+++ ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366666666665 23456677777777777665542 11111 34566666666667777777
Q ss_pred HHHHHHHhhCCCC-CC----HHhHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCCC-C----hHHHHHHHHHHHhCCChhH
Q 037409 419 LKLIDKMQLNDVV-PD----SFTFATYIDGLCKN-GFVLEAVQVFQAIRNCKCEL-R----IETYNCLINGLCKMGRLKT 487 (603)
Q Consensus 419 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 487 (603)
+..+++....... .+ ..++..+...|... |++++|+..|++..+..... + ..++..++..+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7766665432100 01 23455555555554 66666666666655431100 1 2345555666666666666
Q ss_pred HHHHHHHHhhCCCCCCH------hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 488 ACKLFHRLQHKGPIPDV------VTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 488 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
|...|+++.+..+.... ..|..++.++...|++++|+..+++.++.
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666654333211 13445555566666666666666665553
No 87
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.32 E-value=2.2e-11 Score=102.88 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=125.9
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH-H
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW-L 514 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~ 514 (603)
.+......+...|++++|...++++.+.. |.+...+..+..++...|++++|...++++.+..+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 34456667788899999999988877654 56778888889999999999999999988887644 44443333322 2
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA 594 (603)
...++..+|+..++++++.. |.+...+..++.++...|++++|...++++++..+.+.+...+..++.++...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 23334456788899988875 55688889999999999999999999999998776634567888899999999999999
Q ss_pred HHHHHhhc
Q 037409 595 LNQFRHLL 602 (603)
Q Consensus 595 ~~~~~~~l 602 (603)
...|++.+
T Consensus 164 ~~~y~~al 171 (176)
T 2r5s_A 164 ASKYRRQL 171 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888765
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.32 E-value=3e-11 Score=125.12 Aligned_cols=171 Identities=11% Similarity=-0.011 Sum_probs=84.0
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 037409 410 FQVGNLGDALKLIDKMQ--------LNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (603)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555544 221 1123344444455555555555555555555433 3344555555555555
Q ss_pred CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037409 482 MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL 561 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 561 (603)
.|++++|...|+++.+.++. +...|..++.++...|++++ ++.|+++++.+ +.+...+..++.++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555555554333 34445555555555555555 55555555543 33444555555555555555555555
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 562 LHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
++++++.++. +...+..++.++..
T Consensus 557 ~~~al~l~P~--~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRH--FTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTT--HHHHHHHHHHHTC-
T ss_pred HHhhcccCcc--cHHHHHHHHHHHHc
Confidence 5555543332 34444455555444
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.31 E-value=7.6e-12 Score=102.27 Aligned_cols=145 Identities=10% Similarity=-0.096 Sum_probs=104.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM 520 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 520 (603)
...+...|++++|+..++...... +.+...+..+...|.+.|++++|+..|++.++.++. +..+|..++.++...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 334445677777777777765432 334556667778888888888888888888887665 777888888888888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVL-LHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
++|+..|+++++.+ |.+..++..++..|.+.|++++|.+. ++++++..+. ++.++.....++...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~--~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG--SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhCc
Confidence 88888888888765 45677788888888888887665554 5777776654 77777777777777764
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.30 E-value=2.2e-11 Score=111.97 Aligned_cols=227 Identities=12% Similarity=-0.004 Sum_probs=160.3
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC------CC-CCCHhhHHHH
Q 037409 340 CLVGRISRARELFVSMVSK-------GCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE------RI-RPSVITYNTL 405 (603)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 405 (603)
...|+++.|+..+++.++. ..+....++..+...|...|++++|+..++++... +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 21224567888899999999999999999998764 11 2235678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC------CC-CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc------C-CCCChHH
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLN------DV-VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC------K-CELRIET 471 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 471 (603)
...|...|++++|...+++.... .. +.....+..+...+...|++++|...++++.+. . .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998653 11 223567788889999999999999999998864 1 1234678
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhC-------CCCC-CHhHHHHHHHHHHHcCChhHHHH------HHHHHHHCCCCC
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHK-------GPIP-DVVTCSTMIHWLCKEGQMDKAND------LLLDMEAKNCVP 537 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~ 537 (603)
+..++.+|...|++++|...++++.+. ...+ ....|..+.......+....+.. .++..... .+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence 889999999999999999999998863 1112 23344444444444333333322 22221111 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 538 SEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 538 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
...++..++.+|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345688899999999999999999999875
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.3e-10 Score=105.49 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHcC----------CcHHHHHHHHHhhc
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS-DLSLSSKVVDLLSKD----------KKYRECLNQFRHLL 602 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----------g~~~eA~~~~~~~l 602 (603)
..++..|.+.|++++|+..++++++..+..+ .+..+..++.+|... |++++|+..+++++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~ 222 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL 222 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH
Confidence 6778888999999999999999987665422 356788888888866 88899999988765
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=1.6e-10 Score=104.86 Aligned_cols=192 Identities=7% Similarity=-0.044 Sum_probs=107.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCChHHHHHHH
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD---SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC--ELRIETYNCLI 476 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~ 476 (603)
+..+...+...|++++|+..|+++....+. + ...+..+..++...|++++|...|+++.+... +.....+..+.
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg 96 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERA 96 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHH
Confidence 333334444444444444444444433211 1 23334444444444445555444444444321 11123344444
Q ss_pred HHHHh--------CCChhHHHHHHHHHhhCCCCCCHhH-----------------HHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 477 NGLCK--------MGRLKTACKLFHRLQHKGPIPDVVT-----------------CSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 477 ~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
.++.. .|++++|...|+++++..+. +... +..++.+|...|++++|+..|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 97 MCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444 45555555555555443322 1111 3567888899999999999999998
Q ss_pred HCCCCC---CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCC-HHHHHHHHHHHHcCCcHHHHHH
Q 037409 532 AKNCVP---SEVTFCTLLRGFVQN----------NKKSKVVVLLHKMAAEKLVVSD-LSLSSKVVDLLSKDKKYRECLN 596 (603)
Q Consensus 532 ~~~~~~---~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~eA~~ 596 (603)
+.. +. ....+..++.+|... |++++|...++++++..+..+. ......+..++.+.|+++++..
T Consensus 176 ~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~~ 253 (261)
T 3qky_A 176 DAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGDAS 253 (261)
T ss_dssp HHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 864 22 345778888888866 8889999999999987665221 3455666677777777665543
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.30 E-value=7e-11 Score=108.48 Aligned_cols=166 Identities=13% Similarity=0.041 Sum_probs=140.7
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhH-HHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVT-CSTMI 511 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~ 511 (603)
+...+..+...+...|++++|...|+++.+.. |.+...+..++.++.+.|++++|...++++....+ +... .....
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHH
Confidence 45566778888899999999999999999876 66889999999999999999999999999988644 4333 33334
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcH
Q 037409 512 HWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY 591 (603)
Q Consensus 512 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (603)
..+...++.++|+..++++++.. |.+...+..++.++...|++++|...++++++..+...+...+..++.+|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 44778888999999999999886 66788999999999999999999999999998877633478899999999999999
Q ss_pred HHHHHHHHhhc
Q 037409 592 RECLNQFRHLL 602 (603)
Q Consensus 592 ~eA~~~~~~~l 602 (603)
++|...|++-+
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 99999888754
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.29 E-value=1.9e-10 Score=92.20 Aligned_cols=125 Identities=13% Similarity=0.136 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
..++..+...|++++|..+++++.+.++. +...+..++..+...|++++|..+++++.+.+ +.+...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 33444444444444444444444443322 33444444444444445555555544444432 33344444444444555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 553 NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 553 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
|++++|.++++++.+..+. +...+..++.++.+.|++++|...++++
T Consensus 83 ~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5555555555544443322 3444444445555555555555444443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=8.8e-11 Score=102.14 Aligned_cols=176 Identities=9% Similarity=0.004 Sum_probs=132.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHH----------------HHHHHHhCCCHHHHHHHHHHHHH
Q 037409 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFAT----------------YIDGLCKNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 462 (603)
...+......+...|++++|+..|++.....+. +...+.. +..++...|++++|...|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344445566778899999999999999875322 4455666 88889999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHH
Q 037409 463 CKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQ--MDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 540 (603)
.. |.+...+..++.++...|++++|...|+++++.+|. +...|..++.+|...|+ .+.+...+++... ..|...
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 76 668899999999999999999999999999998766 78889999988876654 4455666666543 123334
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
.+...+.++...|++++|...++++++.. |+......+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~---P~~~~~~~l~ 197 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRF---PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTS---CCHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCHHHHHHHH
Confidence 55667778888999999999999999754 4544444333
No 96
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=2.3e-09 Score=97.59 Aligned_cols=219 Identities=9% Similarity=-0.019 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHH----Hhc---CC
Q 037409 344 RISRARELFVSMVSKGCRHDVYSYNILINANCKDQ--KVEDAVCLYREMLSERIRPSVITYNTLLSGL----FQV---GN 414 (603)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 414 (603)
..++|++.++.++..+ +-+..+|+.-...+...+ ++++++..++.++...+. +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3457777777777763 224455666666666666 777777777777765433 445555544444 444 56
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC------hh
Q 037409 415 LGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL--EAVQVFQAIRNCKCELRIETYNCLINGLCKMGR------LK 486 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~ 486 (603)
+++++.+++.+.+..++ +..+|..-...+.+.|.++ ++++.++++.+.+ +-|...|+.-...+.+.+. ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 77777777777665433 5666666666666666666 7777777777655 4466666666666666655 66
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 487 TACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK-ANDLLLDMEAKN--CVPSEVTFCTLLRGFVQNNKKSKVVVLLH 563 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (603)
++++.+++++..++. |...|+.+...+.+.|+..+ +..+.+++.+.+ -+.+...+..++.+|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777776665 67777777777766666433 444555555432 13456667777777777777777777777
Q ss_pred HHHH
Q 037409 564 KMAA 567 (603)
Q Consensus 564 ~~~~ 567 (603)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.26 E-value=9.5e-09 Score=93.55 Aligned_cols=232 Identities=11% Similarity=0.008 Sum_probs=186.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---C
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK--QYDTVVSLFKRLNSNGLFPDLFVLNLLINCL----CKM---G 130 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g 130 (603)
...++|+..++.++..+|. +..+|+.-..++...| ++++++..++.++... |-+..+|+.-..++ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 4557999999999999887 7889999999999999 9999999999999876 55666777766655 555 7
Q ss_pred CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHh--HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC------h
Q 037409 131 ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM--EAARLFKKLNVFACDPNVVTFNTLINGLCRTRN------T 202 (603)
Q Consensus 131 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 202 (603)
++++++..++++.+..++ |..+|+.-...+.+.|.++ +++..++++.+.. +.|..+|+....++...+. +
T Consensus 125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 899999999999998655 8889988888888889888 9999999999875 5688899988888888776 8
Q ss_pred HHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhH-HHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHH
Q 037409 203 LVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK-AKELLLQMKDRN--INPNVITYNSLICGFCCVDDWKEAK 279 (603)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 279 (603)
+++++.+++++.. .+.|...|+.+...+.+.|+... +..+...+.+.+ -+.++..+..++..|.+.|+.++|.
T Consensus 203 ~eEl~~~~~aI~~----~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 203 DEELNYVKDKIVK----CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 9999999999987 47788999988888888888544 555666665432 1336677888888888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHH
Q 037409 280 CLFIEMMDNGVQPDVVTFNA 299 (603)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~ 299 (603)
++++.+.+.--+.....|+.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHH
Confidence 99988876311333444443
No 98
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=5.5e-09 Score=93.88 Aligned_cols=242 Identities=11% Similarity=0.015 Sum_probs=157.1
Q ss_pred hccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchH
Q 037409 56 KSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGA 135 (603)
Q Consensus 56 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 135 (603)
..+.|.+..++.-.. ...+........-+.+++...|++... ..-.|....+..+.. |...+ |
T Consensus 23 ~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----C
T ss_pred HHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----H
Confidence 446788888887433 333443344445567888888887752 111344334443333 33322 6
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037409 136 FVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFAC-DPNVVTFNTLINGLCRTRNTLVALKLFEEMVN 214 (603)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 214 (603)
...+++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.++++.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777654 34555556788888888999999999988866542 13566777888888999999999999998877
Q ss_pred hcCCccCC-----ChhhHHHHHHHH--HhcC--ChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 215 EFGAICKP-----DVVTYNSIIDGL--CKDG--FVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEM 285 (603)
Q Consensus 215 ~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 285 (603)
. .| +..+...++.++ ...| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 165 ~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 165 A-----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp H-----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred c-----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 34 244555555553 3334 888899999988765 344333344445788888888888888866
Q ss_pred HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 286 MDNG---------VQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 286 ~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (603)
.+.- -+.+..++..++......|+ ++.++++++.+..
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 5420 03355666566655555676 7788888888764
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.25 E-value=2.3e-08 Score=98.74 Aligned_cols=378 Identities=10% Similarity=0.003 Sum_probs=201.3
Q ss_pred hcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HhHH
Q 037409 93 KNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR-IMEA 170 (603)
Q Consensus 93 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 170 (603)
+.| +.+.|..+|++++.. -|. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 377788888887754 222 8888888888888875 4588888888877766663 4566
Q ss_pred HHHHHHHHhc-CCC-CcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCCCh-hhHHHHHHHHHhcCChhHH
Q 037409 171 ARLFKKLNVF-ACD-PNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKPDV-VTYNSIIDGLCKDGFVDKA 243 (603)
Q Consensus 171 ~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 243 (603)
..+|+..... |.. .+...|...+..+.. .++.+.+.++|+.++.. +..+. ..|...... ........+
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~----P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT----PMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS----CCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC----hhhhHHHHHHHHHHH-HHHhccccH
Confidence 7777776652 433 356677777776542 35677788888888863 11111 122222111 111112222
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHH
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDG--K-----MDKVNRL 316 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~~a~~~ 316 (603)
..++.+.. +.+..|..+++.+...-...+...|...+..-...+ - .+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22222211 122333333333322100013334544444332211 0 2345667
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--
Q 037409 317 LELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSER-- 394 (603)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-- 394 (603)
|++++... +.+...|...+..+...|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+.-
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHh
Confidence 77777653 335667777777777788888888888888876 33332222 22222122221 22221110
Q ss_pred ----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh-CCCHHHHHHHHHHHHHc
Q 037409 395 ----------IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCK-NGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 395 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 463 (603)
.......|...+....+.++.+.|..+|+.. .. ...+...|......-.. .++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 0001234555555555666777777777777 22 11233333322221112 23577777777777664
Q ss_pred CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 464 KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
. +.++..+...++...+.|+.+.|..+|+++.+ ....|...+..-...|+.+.+..+++++.+
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 33455556666666677777777777777631 456677766666667777777777766653
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=1e-10 Score=121.17 Aligned_cols=185 Identities=9% Similarity=-0.074 Sum_probs=142.8
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 037409 92 AKNKQYDTVVSLFKRLN--------SNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCA 163 (603)
Q Consensus 92 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 163 (603)
...|++++|+..+++++ +.. +.+...+..++.++...|++++|...++++++..+. +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888999999999887 443 556778888888888999999999999888887544 67788888888889
Q ss_pred cCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHH
Q 037409 164 EGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKA 243 (603)
Q Consensus 164 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 243 (603)
.|++++|+..|++..+.. +.+...|..+..++.+.|++++ ++.|+++++.. +.+...|..+..++.+.|++++|
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~----P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN----DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC----CchHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999888764 4466778888888889999998 99999988863 56777888888899999999999
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--------HHHHHHHHHHH
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCCVDD--------WKEAKCLFIEM 285 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~ 285 (603)
++.|++..+.+. .+...+..+..++...++ +++|.+.+..+
T Consensus 554 ~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 554 VRTLDEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HHHHHTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred HHHHHhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 999998887632 245677777777766443 55555555444
No 101
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=1.8e-10 Score=100.16 Aligned_cols=159 Identities=16% Similarity=0.056 Sum_probs=101.0
Q ss_pred hhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHH----------------HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 037409 52 NDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTI----------------LLTMLAKNKQYDTVVSLFKRLNSNGLFPD 115 (603)
Q Consensus 52 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 115 (603)
.+......|++++|+..|++++..+|. +...|.. ++.++.+.|++++|+..|+++++.. |.+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 344444678888888888888887665 5566666 7777777777777777777777665 556
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC--HhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 116 LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR--IMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
...+..++.++...|++++|...|+++++..+. +..++..+...|...|+ ...+...++..... .|....+....
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSSP--TKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCC--CchhHHHHHHH
Confidence 667777777777777777777777777776543 56666666666654443 33444445444321 22223344445
Q ss_pred HHHHhcCChHHHHHHHHHHHHh
Q 037409 194 NGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
.++...|++++|+..|+++++.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 5555667777777777777663
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=7.2e-10 Score=88.72 Aligned_cols=132 Identities=14% Similarity=0.147 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHH
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLC 515 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 515 (603)
.+..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++.+.++. +...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 34556667777788888888887777654 446677777778888888888888888887776544 5667777888888
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 516 KEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 516 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
..|++++|...++++.+.. +.+..++..++..+...|++++|...++++.+..+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888887764 45677777888888888888888888888876543
No 103
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.21 E-value=1e-10 Score=95.45 Aligned_cols=145 Identities=10% Similarity=-0.077 Sum_probs=111.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
...+...|++++|+..++....... .+...+..+...|...|++++|++.|+++.+.. |.++.+|..+..+|.+.|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3445567788888888887765421 134456678888889999999999999988876 66888899999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDL-LLDMEAKNCVPSEVTFCTLLRGFVQNNK 554 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 554 (603)
++|...|++.++.++. +...|..++.+|.+.|++++|.+. ++++++.. |.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 9999999999887666 788888899999999988776654 58888865 5567777777777777765
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=1.1e-09 Score=96.64 Aligned_cols=183 Identities=10% Similarity=-0.044 Sum_probs=99.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh---HHHH
Q 037409 399 VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVV-P-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI---ETYN 473 (603)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 473 (603)
...+..+...+...|++++|+..|+++....+. | ....+..+..++.+.|++++|+..|+++.+.. |.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 344555666777888888888888888764332 1 13466677778888888888888888887654 2222 2455
Q ss_pred HHHHHHHh------------------CCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 474 CLINGLCK------------------MGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 474 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.+..++.. .|++++|...|+++++..|. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 55555544 45666677777666665433 222221110000 000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHcCCcHHHHHHHHHhh
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS-DLSLSSKVVDLLSKDKKYRECLNQFRHL 601 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~ 601 (603)
......++..|.+.|++++|+..++++++..+..+ .+..+..++.+|.+.|++++|++.++++
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00112344455556666666666666655443311 1244555566666666666666655543
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.21 E-value=4.4e-09 Score=94.52 Aligned_cols=144 Identities=10% Similarity=0.028 Sum_probs=64.4
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037409 418 ALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC-ELRIETYNCLINGLCKMGRLKTACKLFHRLQ 496 (603)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 496 (603)
++..+++....+ .++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 22333334444555555555555555555443331 1234445555555555555555555555555
Q ss_pred hCCCCC-----CHhHHHHHHHH--HHHcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 497 HKGPIP-----DVVTCSTMIHW--LCKEG--QMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 497 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 22 12223333322 22222 555555555555443 2332222222225555555555555555443
No 106
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=7.6e-10 Score=102.01 Aligned_cols=209 Identities=9% Similarity=-0.039 Sum_probs=123.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHhHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRS----CFTP-NTVTFNFLINGLCAEGRIMEA 170 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A 170 (603)
++++|...|+++ +..|...|++++|...|.+.... +..+ ...+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366677766665 23456677777777777666553 1111 134677777777777777777
Q ss_pred HHHHHHHHhcCC---CCc--HHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcCCccCC--ChhhHHHHHHHHHhcCChhH
Q 037409 171 ARLFKKLNVFAC---DPN--VVTFNTLINGLCRT-RNTLVALKLFEEMVNEFGAICKP--DVVTYNSIIDGLCKDGFVDK 242 (603)
Q Consensus 171 ~~~~~~~~~~~~---~~~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 242 (603)
+..|++..+... .+. ..++..+..+|... |++++|+..|++.++.......+ ...++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 777777654310 111 34667777778775 88888888888877653100000 03456677777888888888
Q ss_pred HHHHHHHHhhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcC
Q 037409 243 AKELLLQMKDRNINPNV------ITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDV------VTFNAMINYNC--KDG 308 (603)
Q Consensus 243 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~~ 308 (603)
|+..|++..+....... ..|..+..++...|++++|...|++..+. .|+. ..+..++..+. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 88888877765322211 14566667777777777777777776653 2221 12333444443 234
Q ss_pred CHHHHHHHHHHHH
Q 037409 309 KMDKVNRLLELMI 321 (603)
Q Consensus 309 ~~~~a~~~~~~~~ 321 (603)
++++|...|+.+.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 5666666665543
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.19 E-value=4.1e-10 Score=114.79 Aligned_cols=164 Identities=12% Similarity=-0.057 Sum_probs=125.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 412 VGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
.|++++|+..+++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998776433 57788889999999999999999999999866 66788999999999999999999999
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN---NKKSKVVVLLHKMAAE 568 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~ 568 (603)
+++..+..+. +...+..++.++...|++++|++.++++.+.. +.+...+..++.++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999987665 78889999999999999999999999999875 56788899999999999 9999999999999987
Q ss_pred CCCCCCHHHHHHH
Q 037409 569 KLVVSDLSLSSKV 581 (603)
Q Consensus 569 ~~~~~~~~~~~~l 581 (603)
++. +...+..+
T Consensus 158 ~p~--~~~~~~~l 168 (568)
T 2vsy_A 158 GVG--AVEPFAFL 168 (568)
T ss_dssp TCC--CSCHHHHT
T ss_pred CCc--ccChHHHh
Confidence 765 33344333
No 108
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3.2e-08 Score=97.71 Aligned_cols=381 Identities=10% Similarity=-0.009 Sum_probs=227.3
Q ss_pred hcC-CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-hHHH
Q 037409 128 KMG-ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRN-TLVA 205 (603)
Q Consensus 128 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A 205 (603)
+.| +++.|+.+|++++..- |. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 4888888888887652 22 8999999999999875 6799999998888877764 4567
Q ss_pred HHHHHHHHHhcCCccCCChhhHHHHHHHHH----hcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHH---hcCCHHHH
Q 037409 206 LKLFEEMVNEFGAICKPDVVTYNSIIDGLC----KDGFVDKAKELLLQMKDRNINPNVITYNSLICGFC---CVDDWKEA 278 (603)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A 278 (603)
..+|+.++..-+. .+.+...|...+..+. ..|+++.+.++|++.... ++. .+..+-..|. .......+
T Consensus 68 ~~~fe~al~~vg~-d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~--~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 68 YEVYEFTLGQFEN-YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMG--SLSELWKDFENFELELNKITG 142 (493)
T ss_dssp HHHHHHHHHHSTT-CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCT--THHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHcCC-CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhh--hHHHHHHHHHHHHHHhccccH
Confidence 7888888875321 2345677777777654 245678899999998874 221 1122222221 11112222
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc--C-----CHHHHHHH
Q 037409 279 KCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLV--G-----RISRAREL 351 (603)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~ 351 (603)
..++.+.. +.+..|..+++.+...-...+...|...+..-... + ..+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22222211 12333444444333210001233455544432221 1 13456788
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHhhCC-
Q 037409 352 FVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDAL-KLIDKMQLND- 429 (603)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~- 429 (603)
|++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...|.. |....+.++.. .+.+......
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhcc
Confidence 88888763 445677887888888899999999999999987 333333322 22211111211 1111110000
Q ss_pred ----C---CCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC-ChhHHHHHHHHHhhCCCC
Q 037409 430 ----V---VPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG-RLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 430 ----~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~ 501 (603)
. ......|...+....+.++.+.|..+|+.+ +.. +.+...|...+..-...+ +.+.|..+|+...+..+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 0 011234556666666778899999999988 322 234455544333333334 699999999998886433
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
++..|...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566777777788899999999999872 3566777777776778999999888888763
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.17 E-value=4.2e-09 Score=92.81 Aligned_cols=188 Identities=10% Similarity=-0.031 Sum_probs=134.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HhHHH
Q 037409 364 VYSYNILINANCKDQKVEDAVCLYREMLSERIRPS--VITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS--FTFAT 439 (603)
Q Consensus 364 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 439 (603)
...+..+...+.+.|++++|+..|++++...+... ...+..+..++.+.|++++|+..|+++.+..+.... ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34556677889999999999999999987533211 357788889999999999999999999875433211 24445
Q ss_pred HHHHHHh------------------CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 440 YIDGLCK------------------NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 440 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
+..++.. .|++++|...|+++.+.. |.+........... .+...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH------
Confidence 5555543 578999999999999764 44444433221110 001111
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE---VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
......++..+.+.|++++|+..|+++++.. |.+. ..+..++.++.+.|++++|.+.++.+...++.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 1122356778899999999999999999864 3333 56888999999999999999999999887665
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.17 E-value=3.9e-10 Score=95.15 Aligned_cols=158 Identities=13% Similarity=-0.011 Sum_probs=107.3
Q ss_pred hhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC
Q 037409 53 DRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINC-LCKMGI 131 (603)
Q Consensus 53 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 131 (603)
+......|++++|+..|++++..+|. +...|..+..++.+.|++++|+..|+++.... + ++......... +...+.
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHHhhcc
Confidence 33344568888888888888877665 67788888888888888888888888887664 3 55443333222 222233
Q ss_pred cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHhcCChHHHHHHHH
Q 037409 132 TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDP-NVVTFNTLINGLCRTRNTLVALKLFE 210 (603)
Q Consensus 132 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (603)
...|...++++++..+. +...+..+...+...|++++|+..|+++.+....+ +...+..+..++...|+.++|...|+
T Consensus 90 ~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 90 ESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp SCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred cchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 44567777777776433 56677777777777788888888777777653111 24467777777777777777777777
Q ss_pred HHHH
Q 037409 211 EMVN 214 (603)
Q Consensus 211 ~~~~ 214 (603)
+.+.
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1e-09 Score=111.77 Aligned_cols=154 Identities=12% Similarity=-0.002 Sum_probs=122.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVV 138 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 138 (603)
.|++++|+..|+++++.+|. +...|..++..+.+.|++++|...|+++++.. +.+...+..++.++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 37889999999999988765 78899999999999999999999999999886 66788999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHHh
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT---RNTLVALKLFEEMVNE 215 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 215 (603)
++++.+..+. +...+..+...|...|++++|.+.|++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999998644 67899999999999999999999999998874 45677888999999999 9999999999999987
Q ss_pred c
Q 037409 216 F 216 (603)
Q Consensus 216 ~ 216 (603)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.15 E-value=2.2e-09 Score=98.42 Aligned_cols=179 Identities=12% Similarity=-0.021 Sum_probs=130.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHH
Q 037409 61 TSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLG 140 (603)
Q Consensus 61 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 140 (603)
..+.....+...+ +.+...+..+...+.+.|++++|...|++++... |.+...+..++.++...|++++|...++
T Consensus 101 ~~~~l~~~l~~~l----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~ 175 (287)
T 3qou_A 101 PEEAIRALLDXVL----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLX 175 (287)
T ss_dssp CHHHHHHHHHHHS----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHHHHHc----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3344444555442 3356677788888888899999999888888775 5677788888888888888888888888
Q ss_pred HHHHCCCCCCHh-hHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCc
Q 037409 141 RILRSCFTPNTV-TFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAI 219 (603)
Q Consensus 141 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 219 (603)
++....+ +.. ........+...++.++|+..+++..... +.+...+..+...+...|++++|+..|+++++..
T Consensus 176 ~~~~~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--- 249 (287)
T 3qou_A 176 TIPLQDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--- 249 (287)
T ss_dssp TSCGGGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---
T ss_pred hCchhhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---
Confidence 8877643 333 22223334566777788888888877764 4567778888888888888888888888888863
Q ss_pred cCCC--hhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 220 CKPD--VVTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 220 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
+.+ ...+..++..+...|+.++|...|++..
T Consensus 250 -p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 250 -LTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp -TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 222 5677888888888888888888777654
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.14 E-value=6.2e-09 Score=90.62 Aligned_cols=177 Identities=11% Similarity=-0.059 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CcchHHHH
Q 037409 63 NEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMG----ITSGAFVV 138 (603)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 138 (603)
.+|+..|+++.+. .++.++..+...|...+++++|+..|+++.+.| ++..+..+...|.. + ++++|..+
T Consensus 3 ~eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3577888888764 377888888888888999999999999988765 56777777777777 6 78888888
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHh----cCChHHHHHHH
Q 037409 139 LGRILRSCFTPNTVTFNFLINGLCA----EGRIMEAARLFKKLNVFACD-PNVVTFNTLINGLCR----TRNTLVALKLF 209 (603)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~ 209 (603)
|++....+ +...+..|...|.. .+++++|+.+|++..+.|.. .+..++..|...|.. .+++++|+.+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 88887764 56777777777776 77888888888888776411 126677777777777 77888888888
Q ss_pred HHHHHhcCCccCCChhhHHHHHHHHHhc-C-----ChhHHHHHHHHHhhCC
Q 037409 210 EEMVNEFGAICKPDVVTYNSIIDGLCKD-G-----FVDKAKELLLQMKDRN 254 (603)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 254 (603)
++..+. +.+...+..+...|... | +.++|...|+...+.|
T Consensus 153 ~~A~~~-----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL-----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT-----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc-----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 888764 23445666666666543 2 6778888887777665
No 114
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.13 E-value=1.9e-09 Score=84.69 Aligned_cols=112 Identities=13% Similarity=0.004 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+...+..|.+.|++++|+..|++.++.++. +...|..++.++...|++++|+..++++++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 456677788888888888888888888887665 77788888888888888888888888888875 5667788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
+...|++++|.+.++++++..+. +......+..+
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~--~~~a~~~l~~~ 124 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPS--NEEAREGVRNC 124 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcC--CHHHHHHHHHh
Confidence 88888888888888888886654 66666666554
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.09 E-value=1.7e-10 Score=93.52 Aligned_cols=101 Identities=12% Similarity=-0.015 Sum_probs=84.8
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+...+..+...+.+.|++++|...|+++.+.+|. +...|..++.++...|++++|+..|+++++.. |.++..+..++.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 4567778888888889999999999988887666 78888888888889999999999999888875 556788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
+|...|++++|...++++++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999998887654
No 116
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.09 E-value=9.3e-09 Score=89.47 Aligned_cols=174 Identities=12% Similarity=-0.069 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHhHHHHHH
Q 037409 99 TVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG----RIMEAARLF 174 (603)
Q Consensus 99 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 174 (603)
+|++.|+++.+.| ++..+..+...+...+++++|..+|++..+.+ +...+..|...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 55666666666666777777777777766654 45556666666655 4 666777777
Q ss_pred HHHHhcCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcCCccCC---ChhhHHHHHHHHHh----cCChhHH
Q 037409 175 KKLNVFACDPNVVTFNTLINGLCR----TRNTLVALKLFEEMVNEFGAICKP---DVVTYNSIIDGLCK----DGFVDKA 243 (603)
Q Consensus 175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~----~g~~~~a 243 (603)
++..+.| +..++..|...|.. .+++++|+++|++..+.+ + +...+..|...|.. .+++++|
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-----ESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-----TSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-----CCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7665543 45556666666655 566666766666666542 2 14555566666665 5566666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 037409 244 KELLLQMKDRNINPNVITYNSLICGFCCV-D-----DWKEAKCLFIEMMDNG 289 (603)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~~~~~~ 289 (603)
...|++..+. +.+...+..|...|... | ++++|..+|+...+.|
T Consensus 149 ~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 149 SEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6666666554 12334555555555432 2 5666666666665554
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.08 E-value=3.3e-09 Score=98.53 Aligned_cols=174 Identities=11% Similarity=0.036 Sum_probs=86.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CC-CHhhHHHHHHHHHhcCCHH
Q 037409 342 VGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERI----RP-SVITYNTLLSGLFQVGNLG 416 (603)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~ 416 (603)
.++++.|...|.++ ...|...|++++|...|.+...... .+ -..+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566665555543 3345566677777666666544210 00 1234555555666666666
Q ss_pred HHHHHHHHHhhCC---CCCC--HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-----ChHHHHHHHHHHHhCCChh
Q 037409 417 DALKLIDKMQLND---VVPD--SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCEL-----RIETYNCLINGLCKMGRLK 486 (603)
Q Consensus 417 ~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~ 486 (603)
+|+..+++..... -.+. ..++..+...|.. |++++|+..|++..+..... ...++..+..+|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 6666666553210 0111 2344445555555 66666666665554321000 1244555555566666666
Q ss_pred HHHHHHHHHhhCCCC----CC-HhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 487 TACKLFHRLQHKGPI----PD-VVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~----p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+|...|++..+..+. +. ...+..++.++...|++++|+..|++.+
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666555542110 00 1134444445555566666666666555
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=1.6e-09 Score=100.66 Aligned_cols=228 Identities=11% Similarity=-0.030 Sum_probs=164.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 037409 341 LVGRISRARELFVSMVSKGCRHDVYSYNILINANCK-DQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
..|++++|.+++++..+... . .+.+ .++++.|...|.++ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 35678889998888876521 1 1222 57888888888765 34677889999999
Q ss_pred HHHHHHhhC----CCCC-CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CC--ChHHHHHHHHHHHhCCChhHHH
Q 037409 420 KLIDKMQLN----DVVP-DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---EL--RIETYNCLINGLCKMGRLKTAC 489 (603)
Q Consensus 420 ~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~ 489 (603)
..+.+.... +..+ -..++..+...|...|++++|+..|++..+... .+ ...++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 999887542 1111 134777888899999999999999998875411 11 24678889999988 9999999
Q ss_pred HHHHHHhhCCCCC-C----HhHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhcCCHHHHH
Q 037409 490 KLFHRLQHKGPIP-D----VVTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CVPS-EVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 490 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~ 559 (603)
..+++.++..... + ..++..++.++...|++++|+..|+++++.. ..+. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999988742211 1 4578889999999999999999999998742 1111 235677788888999999999
Q ss_pred HHHHHHHHCCCCCCCHH---HHHHHHHHHHcCCcHHHHHHH
Q 037409 560 VLLHKMAAEKLVVSDLS---LSSKVVDLLSKDKKYRECLNQ 597 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~eA~~~ 597 (603)
..+++.+ ..+..++.. ....++..+ ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 655523332 233445544 57887777663
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=5.6e-09 Score=86.99 Aligned_cols=125 Identities=10% Similarity=-0.005 Sum_probs=59.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..++..+...|++++|...|++..+..+. +...+..++.++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344444444555555555555555443332 34444555555555555555555555555443 3344445555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCCHHHH--HHHHHHHHcCCcHHHHHHHHHh
Q 037409 552 NNKKSKVVVLLHKMAAEKLVVSDLSLS--SKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.|++++|...++++.+..+. +...+ ...+..+.+.|++++|++.+++
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 55555555555555544332 33333 2222224445555555555443
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.03 E-value=1e-09 Score=89.17 Aligned_cols=114 Identities=11% Similarity=-0.038 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 455 QVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
..++++.+.. +.+...+..+...+.+.|++++|...|+++...++. +...|..++.++...|++++|+..|+++++.+
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4455665543 446678888999999999999999999999987666 88899999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 535 CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+.+...+..++.+|...|++++|...++++++..+.
T Consensus 86 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 86 -IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp -TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred -CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567888999999999999999999999999986654
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.02 E-value=2.1e-09 Score=87.12 Aligned_cols=103 Identities=13% Similarity=0.002 Sum_probs=74.8
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...|+++.+.. |.++..|..+..+|...|++++|...|+++.+.+|. +...|..++.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3455666667777777788877777777765 556777777777777777777887777777776555 56677777777
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
|...|++++|+..|+++++.. |+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 777777777877777777753 5543
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.02 E-value=1.9e-07 Score=85.78 Aligned_cols=175 Identities=10% Similarity=0.035 Sum_probs=145.2
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-Ccch
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK-QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM-G-ITSG 134 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~ 134 (603)
..+..++|+.+++.++..+|. +..+|+.-..++...| .+++++.+++.++... +-+..+|+....++... + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 345667899999999999887 8889999999998888 5999999999999886 66778888888777776 7 8999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHh--------HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCC-----
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIM--------EAARLFKKLNVFACDPNVVTFNTLINGLCRTRN----- 201 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 201 (603)
++..+++++...++ |..+|+.-...+.+.|.++ ++++.++++.+.. +.|..+|+....++.+.+.
T Consensus 144 EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 99999999988655 7888888777777666666 8999999998875 5688899998888888776
Q ss_pred --hHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCCh
Q 037409 202 --TLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFV 240 (603)
Q Consensus 202 --~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 240 (603)
++++++.+++++.. .+.|...|+-+-..+.+.|+.
T Consensus 222 ~~~~eELe~~~~aI~~----~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 222 RSLQDELIYILKSIHL----IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCC
Confidence 68999999999987 467888888777777766654
No 123
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=2e-09 Score=87.50 Aligned_cols=111 Identities=14% Similarity=0.007 Sum_probs=88.5
Q ss_pred HHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 421 LIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
.++++.... +.+...+..+...+...|++++|...|+.+.... +.+...|..+..+|...|++++|...|+++...++
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 445554432 1144566677788888999999999999888766 66888888899999999999999999999988766
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
. +...+..++.++...|++++|+..|+++++..
T Consensus 87 ~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 87 X-EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp T-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 5 67788888999999999999999999988753
No 124
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=1.1e-07 Score=87.55 Aligned_cols=161 Identities=10% Similarity=0.005 Sum_probs=86.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCC-CCCh----HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----HhHHHHH
Q 037409 441 IDGLCKNGFVLEAVQVFQAIRNCKC-ELRI----ETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VVTCSTM 510 (603)
Q Consensus 441 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l 510 (603)
+..+...|++++|..++++..+... .++. ..+..+...+...|++++|...++++.+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666654321 1111 12223455555556666666666666653211 12 2246666
Q ss_pred HHHHHHcCChhHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCCHHHHHH
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAK-----NCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAE----KLVVSDLSLSSK 580 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~~ 580 (603)
+.+|...|++++|+.+++++++. +..+. ..++..++.+|.+.|++++|...++++++. +....-...+..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 66666666666666666666531 10111 224566666666666666666666666532 111012456666
Q ss_pred HHHHHHcCC-cHHHHHHHHHhh
Q 037409 581 VVDLLSKDK-KYRECLNQFRHL 601 (603)
Q Consensus 581 l~~~~~~~g-~~~eA~~~~~~~ 601 (603)
++.+|.+.| .+++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 666666666 346666666654
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.00 E-value=1.4e-08 Score=88.72 Aligned_cols=127 Identities=11% Similarity=0.011 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFV 550 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 550 (603)
.+..++..+...|++++|...|++.. .|+...|..++.++...|++++|+..++++++.. +.+...+..++.++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667778888888888887774 3467788888888888888888888888888765 556777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--------------CHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 551 QNNKKSKVVVLLHKMAAEKLVVS--------------DLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 551 ~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
..|++++|...++++.+..+..+ ....+..++.+|.+.|++++|.+.+++.+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88888888888888887554311 23778888888888888888888888764
No 126
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.99 E-value=9.4e-08 Score=87.80 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=129.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-C-CHH
Q 037409 340 CLVGRISRARELFVSMVSKGCRHDVYSYNILINANCKDQ-KVEDAVCLYREMLSERIRPSVITYNTLLSGLFQV-G-NLG 416 (603)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~ 416 (603)
.+.+..++|+++++.++..+ +.+..+|+.-...+...+ .+++++..++.++...++ +..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChH
Confidence 33444566777777777664 224455666666666666 477777777777765443 556666655555554 5 667
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH--------HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCC----
Q 037409 417 DALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL--------EAVQVFQAIRNCKCELRIETYNCLINGLCKMGR---- 484 (603)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 484 (603)
+++++++.+.+...+ +...|+.-...+.+.|.++ ++++.++++.+.+ +-|...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence 777777777665433 5555555554444444444 6666666666655 4466666666666666654
Q ss_pred ---hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh--------------------hHHHHHHHHHHHCC-----CC
Q 037409 485 ---LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM--------------------DKANDLLLDMEAKN-----CV 536 (603)
Q Consensus 485 ---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~ 536 (603)
++++++.+++++...+. |...|+.+-..+.+.|+. .+..+...++.... ..
T Consensus 221 ~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 56666666666666555 666666666666655543 22222222222211 02
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 537 PSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 537 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
++...+..++..|...|+.++|.++++.+.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 45556666666666666666666666665543
No 127
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.99 E-value=3e-08 Score=86.53 Aligned_cols=126 Identities=13% Similarity=-0.096 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCK 481 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 481 (603)
+..+...+...|++++|+..+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..++.+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4445555666677777777666553 3455666666666666677777777666666554 4456666666666666
Q ss_pred CCChhHHHHHHHHHhhCCCCCCH----------------hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 482 MGRLKTACKLFHRLQHKGPIPDV----------------VTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
.|++++|...|+++.+..+. +. ..+..++.++...|++++|.+.++++++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66777776666666665333 22 45566666666666666666666666654
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=1.7e-08 Score=79.16 Aligned_cols=111 Identities=11% Similarity=-0.068 Sum_probs=92.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+......+.+.|++++|++.|++.++.. |.+...|..+..+|.+.|++++|+..+++.++.++. +...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 456667788889999999999999988876 668888999999999999999999999999887666 788889999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...|++++|++.|+++++.. |.+...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence 99999999999999999875 5566666665543
No 129
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.98 E-value=1.1e-08 Score=90.65 Aligned_cols=187 Identities=10% Similarity=-0.081 Sum_probs=121.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHhCCCCCC---------------
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTIL-------LTMLAKNKQYDTVVSLFKRLNSNGLFPD--------------- 115 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 115 (603)
..++++.|+..|.++...+|. ....|..+ ..++.+.++..+++..+.+.+.. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 468999999999999999887 89999988 67888888888888888777652 111
Q ss_pred -------HHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCc--H
Q 037409 116 -------LFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPN--V 186 (603)
Q Consensus 116 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 186 (603)
..........+...|++++|.++|+.+...++. +. ....+...+.+.+++++|+..|+...... +|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122333455666777777777777666654322 22 44455556667777777777776554321 111 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 187 VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP--DVVTYNSIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
..+..+..++.+.|++++|+..|++..... ..| ..........++.+.|+.++|..+|+++...
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSP---AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTST---TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 355666667777777777777777766321 112 2234455566666777777777777776664
No 130
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-08 Score=81.08 Aligned_cols=121 Identities=9% Similarity=-0.085 Sum_probs=94.5
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+.+...+..++..+...|++++|...+++..+..+. +...+..++.++...|++++|+..++++++.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 345667778888888888888888888888876554 67778888888888888888888888888764 5567788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK 590 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 590 (603)
+.++...|++++|.+.++++.+..+. +...+..++.++.+.|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcC
Confidence 88888888888888888888876554 56677777777776653
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.97 E-value=1e-08 Score=96.24 Aligned_cols=129 Identities=7% Similarity=-0.059 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--------------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--------------VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
..+..+...|.+.|++++|...|++.++..+... ...|..++.++.+.|++++|+..++++++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444444445555555555555555444332211 3455555666666666666666666665553
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHH-HHHHHhh
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYREC-LNQFRHL 601 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA-~~~~~~~ 601 (603)
+.+...+..++.+|...|++++|...++++++..+. +...+..++.++.+.|++++| ...+++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666666666666666666554443 555555566666666666655 3344444
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.95 E-value=1.8e-07 Score=86.10 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=105.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC---CC--HhH
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELR-----IETYNCLINGLCKMGRLKTACKLFHRLQHKGPI---PD--VVT 506 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p~--~~~ 506 (603)
+...+..+...|++++|.+.+++..+...... ...+..++..+...|++++|...+++..+.... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 34455566677777777777777665432111 122344555666777888888888777653211 11 346
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCCHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAK--NCVPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK----LVVSDLS 576 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 576 (603)
++.++..|...|++++|+..++++++. ..+.+ ..++..++.+|...|++++|...++++++.. .......
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 777788888888888888888877621 01121 1467777888888888888888888776431 1101256
Q ss_pred HHHHHHHHHHcCCcHHHH-HHHHHhh
Q 037409 577 LSSKVVDLLSKDKKYREC-LNQFRHL 601 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA-~~~~~~~ 601 (603)
++..++.+|.+.|++++| ..++++.
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 777788888888888888 6666654
No 133
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=3.5e-08 Score=77.41 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+...|++++|...++++.+..+. +..++..++.++...|++++|+.+++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456666777777777777777777777765443 56667777777777777777777777777654 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcC
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKD 588 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 588 (603)
+...|++++|...++++.+..+. ++..+..++.++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhc
Confidence 77777777777777777765543 566666666665543
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.94 E-value=2.3e-08 Score=79.21 Aligned_cols=120 Identities=13% Similarity=0.017 Sum_probs=86.1
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 3456666777777777777777777777765443 56677777777777788888888777777764 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcH
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKY 591 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 591 (603)
++...|++++|...++++.+..+. +...+..++.++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcC
Confidence 788888888888888877776543 666777777777776654
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=5.3e-08 Score=80.98 Aligned_cols=129 Identities=7% Similarity=-0.123 Sum_probs=102.5
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++..+..+. +...|..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345666777788888999988888888765 557888888888899999999999999988887554 677888888899
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTL--LRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~ 566 (603)
...|++++|...++++++.. +.+...+..+ +..+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999988875 4556666444 444778889999998888765
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=5.2e-09 Score=95.57 Aligned_cols=95 Identities=12% Similarity=-0.046 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 037409 366 SYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLC 445 (603)
Q Consensus 366 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (603)
.+..+...+.+.|++++|+..|++++.... .+...|..+..+|...|++++|+..+++..+.... +...+..+..++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 344444555555555555555555544322 13444555555555555555555555555443221 3444444555555
Q ss_pred hCCCHHHHHHHHHHHHH
Q 037409 446 KNGFVLEAVQVFQAIRN 462 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~ 462 (603)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.91 E-value=2.2e-08 Score=84.36 Aligned_cols=124 Identities=7% Similarity=-0.018 Sum_probs=90.7
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH-HHHcCCh--h
Q 037409 445 CKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW-LCKEGQM--D 521 (603)
Q Consensus 445 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 521 (603)
...|++++|...+++..+.. +.+...+..++.+|...|++++|...|+++.+..+. +...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777777655 556777888888888888888888888888776554 66677777777 6677887 8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+|+..++++++.+ +.+...+..++.++...|++++|...++++++..+.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 147 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP 147 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 8888888888764 456777778888888888888888888888876654
No 138
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.91 E-value=7.6e-09 Score=83.51 Aligned_cols=103 Identities=12% Similarity=-0.067 Sum_probs=91.0
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.+...+..+...+.+.|++++|...|+++...++. +...|..++.++...|++++|+..|+++++.+ +.+...+..++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 93 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 35567778888999999999999999999987766 78889999999999999999999999999976 66788889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.++...|++++|...++++++..+.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999876654
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.90 E-value=9.2e-09 Score=86.78 Aligned_cols=119 Identities=5% Similarity=0.051 Sum_probs=103.0
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG-FVQNNKK--S 556 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 556 (603)
...|++++|...+++..+..+. +...|..++.++...|++++|+..++++++.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 4578899999999999987665 78899999999999999999999999999875 5678888999999 8899998 9
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+|...++++++..+. +...+..++.+|...|++++|...+++.+
T Consensus 99 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 99 QTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999987765 78899999999999999999999999865
No 140
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.90 E-value=1.3e-08 Score=88.09 Aligned_cols=161 Identities=11% Similarity=-0.086 Sum_probs=97.4
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCChHHHHHHHHHHHhCCC
Q 037409 410 FQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNC----KC-ELRIETYNCLINGLCKMGR 484 (603)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 484 (603)
...|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356777777775444433 22234556667777777778888888777776641 11 1234566677777777777
Q ss_pred hhHHHHHHHHHhhC---CC-CC--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcC
Q 037409 485 LKTACKLFHRLQHK---GP-IP--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPS----EVTFCTLLRGFVQNN 553 (603)
Q Consensus 485 ~~~A~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g 553 (603)
+++|...+++..+. .. .| ....+..++..+...|++++|...+++.++... ..+ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777776653 11 11 133466677777777777777777777664310 112 223466677777777
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 037409 554 KKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 554 ~~~~a~~~~~~~~~~~~~ 571 (603)
++++|...++++.+....
T Consensus 162 ~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 777777777777764433
No 141
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.5e-08 Score=77.68 Aligned_cols=114 Identities=11% Similarity=-0.022 Sum_probs=81.0
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+.+.|++++|...|++.++..+. +...|..++.++...|++++|+..++++++.+ +.+...+..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666777777788888888888887776554 67777778888888888888888888887765 4567777788888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLV----VSDLSLSSKVVDL 584 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~ 584 (603)
+...|++++|...++++++..+. |.+..+...+..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 88888888888888887765510 1255555544443
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.89 E-value=9.8e-08 Score=84.64 Aligned_cols=189 Identities=8% Similarity=-0.112 Sum_probs=137.9
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCcchHHHHHHHHHHCCCC-----------------
Q 037409 93 KNKQYDTVVSLFKRLNSNGLFPDLFVLNLL-------INCLCKMGITSGAFVVLGRILRSCFT----------------- 148 (603)
Q Consensus 93 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~----------------- 148 (603)
..++...|.+.|.++.... |.....|..+ ..++.+.++..+++..+.+.+...+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5899999999999999886 6677888877 56777777777777777666652110
Q ss_pred ---CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCC--
Q 037409 149 ---PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPD-- 223 (603)
Q Consensus 149 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-- 223 (603)
.-...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... ..|.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccH
Confidence 01234455677788899999999999888765 354446666777888899999999999855432 1111
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN--VITYNSLICGFCCVDDWKEAKCLFIEMMDN 288 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 288 (603)
...+..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 23567788888889999999999988875433243 345667777888888888898888888876
No 143
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.88 E-value=8.7e-09 Score=83.18 Aligned_cols=99 Identities=12% Similarity=-0.039 Sum_probs=81.8
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...|+.+.... +.+...|..+..+|.+.|++++|...|++..+.++. +...+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence 4455666777888899999999998888766 667888888888999999999999999998887665 66778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCC
Q 037409 514 LCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~ 534 (603)
+...|++++|+..|+++++..
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999998888753
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.88 E-value=4e-07 Score=83.77 Aligned_cols=163 Identities=10% Similarity=-0.012 Sum_probs=121.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHH----hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hHHHHH
Q 037409 405 LLSGLFQVGNLGDALKLIDKMQLNDV-VPDSF----TFATYIDGLCKNGFVLEAVQVFQAIRNCKCE-LR----IETYNC 474 (603)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 474 (603)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|...++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788999999999988876422 22221 2334566667778999999999998874322 22 336899
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhC-----CCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHH
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHK-----GPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVPS-EVTFC 543 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 543 (603)
++.+|...|++++|...++++.+. +..+ ...++..++.+|...|++++|+..++++++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999988841 1111 2347889999999999999999999988754 21222 67889
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNK-KSKVVVLLHKMAA 567 (603)
Q Consensus 544 ~l~~~~~~~g~-~~~a~~~~~~~~~ 567 (603)
.++.+|.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999999874
No 145
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.87 E-value=3.8e-09 Score=91.04 Aligned_cols=123 Identities=12% Similarity=-0.070 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---------------HhHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---------------VVTCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
..+..+...+...|++++|...|++..+..+... ...|..++.++...|++++|+..++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3444455555555566666655555555322211 2456666666667777777777777766653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHH
Q 037409 535 CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECL 595 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~ 595 (603)
+.+...+..++.+|...|++++|...++++++..+. +...+..++.++...|+.+++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHC--
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777777776665443 5666666666666666666655
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.86 E-value=1.1e-07 Score=74.47 Aligned_cols=116 Identities=15% Similarity=0.108 Sum_probs=89.5
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...++++.+.. +.+...+..++.++.+.|++++|...++++.+..+. +..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 4566677777888888888888888887654 556778888888888888888888888888876544 67778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN 552 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 552 (603)
+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 888888888888888888764 45666677776666544
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.85 E-value=2.1e-06 Score=78.60 Aligned_cols=237 Identities=9% Similarity=0.004 Sum_probs=145.0
Q ss_pred HhcCCH-HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037409 340 CLVGRI-SRARELFVSMVSKGCRHDVYSYNILINANCKDQK----------VEDAVCLYREMLSERIRPSVITYNTLLSG 408 (603)
Q Consensus 340 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 408 (603)
.+.|.+ ++|++.++.++..+ +.+..+|+.--..+...+. +++++..++.++...+. +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344544 47788888887764 2233445554444443333 56777777777765433 66677666666
Q ss_pred HHhcC--CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhC---
Q 037409 409 LFQVG--NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF-VLEAVQVFQAIRNCKCELRIETYNCLINGLCKM--- 482 (603)
Q Consensus 409 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 482 (603)
+...+ .+++++.+++.+.+..+. +...|+.-...+...|. ++++++.++.+.+.. +.|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 66666 377778888777766544 66666666666666676 477777777777765 55677777666666554
Q ss_pred -----------CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc-----------CChhHHHHHHHHHHHCCCCCCHH
Q 037409 483 -----------GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE-----------GQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 483 -----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
+.++++++.+.+.+...|. |...|+.+-..+... +.++++++.++++++.. |.+.-
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w 273 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKW 273 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccch
Confidence 3466777777777776666 777777666655554 34667777777777754 22322
Q ss_pred HHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 541 TFCTLLR---GFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 541 ~~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
++..++. .....|..+++..++.++.+.+|. ...-|..+...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~--r~~~y~d~~~~ 318 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM--RAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG--GHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc--hhhHHHHHHHH
Confidence 2222221 122356667777777777764432 55555554443
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.85 E-value=4.8e-08 Score=81.05 Aligned_cols=97 Identities=6% Similarity=-0.116 Sum_probs=50.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+...|++++|+..|++..+.. +.+...+..+..+|.+.|++++|+..|++.++.++. +...|..++.++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 344444455555555555555555555443 334455555555555555555555555555554333 444555555555
Q ss_pred HHcCChhHHHHHHHHHHHC
Q 037409 515 CKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~ 533 (603)
...|++++|+..|+++++.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 5555555555555555543
No 149
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.84 E-value=1.1e-07 Score=75.29 Aligned_cols=119 Identities=12% Similarity=-0.045 Sum_probs=91.6
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+..+. +...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence 4456667777778888888888888877654 556777888888888888888888888888876544 57778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKK 555 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 555 (603)
+...|++++|...++++.+.. +.+...+..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888764 45677777777777777664
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.82 E-value=1.9e-07 Score=72.24 Aligned_cols=112 Identities=11% Similarity=0.023 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
...+..++..+...|++++|...+++..+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 455666777777778888888888877776444 66677777777888888888888888877764 4567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q 037409 549 FVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDL 584 (603)
Q Consensus 549 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 584 (603)
+...|++++|...++++.+..+. ++..+..++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHHHh
Confidence 88888888888888888765543 55555555443
No 151
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.82 E-value=8.2e-08 Score=76.26 Aligned_cols=118 Identities=10% Similarity=-0.021 Sum_probs=84.2
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIH 512 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 512 (603)
+...+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 44566667777777777777777777777654 446677777777777788888888888877776544 6677777777
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037409 513 WLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNN 553 (603)
Q Consensus 513 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 553 (603)
++...|++++|++.++++.+.. +.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8888888888888888877754 334556666666666554
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.81 E-value=2.8e-06 Score=77.76 Aligned_cols=168 Identities=10% Similarity=-0.051 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 62 SNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQ----------YDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
.++|+..++.++..+|. +..+|+.-..++...+. +++++.+++.++... |-+..+|+.-.-++...|+
T Consensus 46 s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 46 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp SHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCc
Confidence 45899999999999876 78889877776665554 678899999988875 6677888888888888884
Q ss_pred --cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc---------
Q 037409 132 --TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGR-IMEAARLFKKLNVFACDPNVVTFNTLINGLCRT--------- 199 (603)
Q Consensus 132 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 199 (603)
+++++..++++....+. |..+|+.-..++...|. ++++++.++++.+.. +.|..+|+....++...
T Consensus 124 ~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 124 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-----
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccc
Confidence 78999999999988655 78888888777888887 589999999988875 56788888877666654
Q ss_pred -----CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc
Q 037409 200 -----RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD 237 (603)
Q Consensus 200 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 237 (603)
+.++++++.+++.+.. .|.|..+|+-+-..+.+.
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~----~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHSS
T ss_pred cccchHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhc
Confidence 4477888888888887 466777776555444443
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=6.5e-08 Score=76.13 Aligned_cols=97 Identities=6% Similarity=-0.049 Sum_probs=88.4
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++..+...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..++++++..+. ++..+..++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 79 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHH
Confidence 34568888999999999999999999999975 667899999999999999999999999999987765 889999999
Q ss_pred HHHHcCCcHHHHHHHHHhhc
Q 037409 583 DLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~~~~~l 602 (603)
.++...|++++|++.+++.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH
Confidence 99999999999999998864
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.80 E-value=5.8e-07 Score=82.71 Aligned_cols=166 Identities=8% Similarity=-0.052 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-----HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---CCC--hHH
Q 037409 402 YNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDS-----FTFATYIDGLCKNGFVLEAVQVFQAIRNCKC---ELR--IET 471 (603)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~~~ 471 (603)
+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 344555666777777777777766554322111 1233455566777888999888888775321 111 457
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhh---CCCC-C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC----CCC-CHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQH---KGPI-P--DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN----CVP-SEV 540 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~ 540 (603)
++.++..|...|++++|...++++.+ ..+. + ...++..++.+|...|++++|+..++++++.. ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 88888999999999999999988873 2111 1 12578888999999999999999999887542 111 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037409 541 TFCTLLRGFVQNNKKSKV-VVLLHKMAA 567 (603)
Q Consensus 541 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 567 (603)
++..++.+|.+.|++++| ...++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 788899999999999999 777887763
No 155
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.79 E-value=1.3e-07 Score=88.63 Aligned_cols=130 Identities=9% Similarity=-0.098 Sum_probs=99.4
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--------------hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCC
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR--------------IETYNCLINGLCKMGRLKTACKLFHRLQHKGP 500 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 500 (603)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..++++++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455556666666666666666666665442211 57888888899999999999999999888766
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037409 501 IPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV-VVLLHKMA 566 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 566 (603)
. +...|..++.+|...|++++|+..|+++++.. +.+..++..+..++...|++++| ...+++|.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 78888888999999999999999999988875 55777888888888888888888 45666665
No 156
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=4.6e-08 Score=89.27 Aligned_cols=97 Identities=11% Similarity=-0.117 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Q 037409 117 FVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGL 196 (603)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (603)
..+..++..+...|++++|...++++++..+. +...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 33444444444444555555444444444222 44455555555555555555555555555442 23444555555555
Q ss_pred HhcCChHHHHHHHHHHHHh
Q 037409 197 CRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~ 215 (603)
...|++++|+..|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5666666666666555543
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.77 E-value=6.6e-08 Score=76.02 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=76.3
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCC----HHHH
Q 037409 469 IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN--CVPS----EVTF 542 (603)
Q Consensus 469 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~ 542 (603)
...+..++..+.+.|++++|+..|+++++.+|. +...|..++.+|...|++++|++.++++++.+ ..++ ..++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345667778888888888888888888876655 67777788888888888888888888777642 1111 2356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 543 CTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 543 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
..++.++...|++++|++.+++.+ ... |+++....+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal--~~~-~~~~~~~~l 122 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSL--SEF-RDPELVKKV 122 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--HHS-CCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--hhC-cCHHHHHHH
Confidence 677777778888888888877765 333 666654443
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.76 E-value=7.2e-08 Score=83.29 Aligned_cols=157 Identities=14% Similarity=0.016 Sum_probs=96.1
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCc
Q 037409 58 GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSN----GL-FPDLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 58 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 132 (603)
..|++++|.+.++.... +|.....++..+...+...|++++|+..++++... +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35888899885555443 34446778888888999999999999999887752 11 12234566666777777777
Q ss_pred chHHHHHHHHHHC---CC-C--CCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC---CCCc--HHHHHHHHHHHHhcCC
Q 037409 133 SGAFVVLGRILRS---CF-T--PNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA---CDPN--VVTFNTLINGLCRTRN 201 (603)
Q Consensus 133 ~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~ 201 (603)
++|...+++.... .. . .....+..+...+...|++++|...+++..... ..+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777766553 11 1 123345666666667777777777766654320 0111 1234555566666666
Q ss_pred hHHHHHHHHHHHHh
Q 037409 202 TLVALKLFEEMVNE 215 (603)
Q Consensus 202 ~~~A~~~~~~~~~~ 215 (603)
+++|.+.+++..+.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.76 E-value=7.4e-08 Score=74.91 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..++..+.+.|++++|...|+++++..+. +...|..++.++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 444555666666666666666666665444 55666666666666666666666666666654 3455566666666666
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 037409 552 NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 552 ~g~~~~a~~~~~~~~~~~ 569 (603)
.|++++|...++++++..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666666543
No 160
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.76 E-value=1.4e-07 Score=75.51 Aligned_cols=101 Identities=12% Similarity=-0.024 Sum_probs=75.6
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
+.+...+..++..+...|++++|...|++..+..+. +...|..++.++...|++++|+..++++++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 345667777777777788888888888777776554 66777777777888888888888888877764 4567777778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 037409 546 LRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 546 ~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+.++...|++++|...++++++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888888888888888877754
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.75 E-value=1.8e-07 Score=73.46 Aligned_cols=108 Identities=9% Similarity=-0.006 Sum_probs=84.9
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CC----HhHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PD----VVTCS 508 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 508 (603)
..+..+...+.+.|++++|+..|++.++.. |.+...|..+..+|.+.|++++|+..+++.++.++. ++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456678888889999999999999988876 667888889999999999999999999988874322 11 23677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
.++.++...|++++|++.|++.++. .|++.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence 7888888899999999999988874 4776665444
No 162
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.72 E-value=1.4e-07 Score=78.17 Aligned_cols=119 Identities=10% Similarity=-0.045 Sum_probs=100.6
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.+...+..+...+.+.|++++|+..|++.++..+. +...|..++.+|...|++++|+..++++++.. +.+...|..++
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35678889999999999999999999999997666 78899999999999999999999999999986 56788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHc
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSK 587 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 587 (603)
.+|...|++++|...++++++..+..++......+..+..+
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 127 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRK 127 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999877663333344444444433
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=5e-07 Score=73.22 Aligned_cols=116 Identities=12% Similarity=0.026 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPD---VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
.+...+..+...+...|++++|...|++..+..+. + ...|..++.++...|++++|+..++++++.. +.+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 34566777777777777777777777777775432 2 5667777777788888888888888877764 44667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
.++.++...|++++|...++++++..+. +...+..+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPK--NKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHh
Confidence 7788888888888888888888776543 5555555555443
No 164
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.72 E-value=2.3e-08 Score=86.12 Aligned_cols=130 Identities=12% Similarity=-0.043 Sum_probs=94.7
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----------------hHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR----------------IETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
..+..+...+...|++++|...|++..+.. +.+ ...+..+..+|.+.|++++|...+++.++.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345556666677777777777777776643 222 278888899999999999999999999987
Q ss_pred CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV-VLLHKMAA 567 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~ 567 (603)
.+. +...+..++.++...|++++|+..|+++++.. +.+..++..+..++...|+.+++. ..++.+..
T Consensus 118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 655 78888999999999999999999999998875 557778888888888877776666 45555543
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.71 E-value=2.5e-07 Score=73.89 Aligned_cols=98 Identities=7% Similarity=0.001 Sum_probs=89.8
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKV 581 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 581 (603)
.+...|..++..+...|++++|+..|+++++.. +.+...+..++.++...|++++|...++++++..+. ++..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 367889999999999999999999999999875 567889999999999999999999999999987764 88999999
Q ss_pred HHHHHcCCcHHHHHHHHHhhc
Q 037409 582 VDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 582 ~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.+|...|++++|+..+++.+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999998864
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.71 E-value=2e-07 Score=71.26 Aligned_cols=102 Identities=11% Similarity=-0.025 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVP--SEVTFCTL 545 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l 545 (603)
+...+..++..+...|++++|...++++.+..+. +...|..++.++...|++++|+..++++++.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 4455666666777777777777777777665444 56666677777777777777777777777654 34 56667777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 037409 546 LRGFVQN-NKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 546 ~~~~~~~-g~~~~a~~~~~~~~~~~~~ 571 (603)
+.++... |++++|.+.++++.+..+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 7777777 7777777777777665543
No 167
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.71 E-value=7.3e-07 Score=68.81 Aligned_cols=112 Identities=11% Similarity=-0.083 Sum_probs=84.9
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHH
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHW 513 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 513 (603)
...+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...+++..+..+. +...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence 3456667777778888888888888887755 556778888888888888888888888888876554 67778888888
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG 548 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 548 (603)
+...|++++|.+.++++.+.+ +.+...+..+..+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 888888888888888888764 4455555555443
No 168
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.67 E-value=1.9e-07 Score=72.55 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLS 586 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 586 (603)
+..++..+.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..++++++..+. +...+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 3344455555555555555555555543 334555555555555555555555555555554443 4555555555555
Q ss_pred cCCcHHHHHHHHHhh
Q 037409 587 KDKKYRECLNQFRHL 601 (603)
Q Consensus 587 ~~g~~~eA~~~~~~~ 601 (603)
..|++++|++.+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555544
No 169
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.64 E-value=3.3e-07 Score=70.05 Aligned_cols=99 Identities=8% Similarity=-0.122 Sum_probs=87.6
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++++..+...+...+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45678889999999999999999999999875 56788899999999999999999999999998654211788999999
Q ss_pred HHHHcC-CcHHHHHHHHHhhc
Q 037409 583 DLLSKD-KKYRECLNQFRHLL 602 (603)
Q Consensus 583 ~~~~~~-g~~~eA~~~~~~~l 602 (603)
.++.+. |++++|.+.+++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHhCCHHHHHHHHHHHh
Confidence 999999 99999999999875
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.63 E-value=4.5e-07 Score=88.99 Aligned_cols=123 Identities=9% Similarity=-0.029 Sum_probs=69.7
Q ss_pred HHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---------------hHHHHHHHHHHHhCCChhHHHHHHHHHhhC
Q 037409 434 SFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---------------IETYNCLINGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
...+..+...+.+.|++++|...|+++.+.. +.+ ...|..+..+|.+.|++++|+..++++++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3455566666677777777777777766543 222 355555666666666666666666666655
Q ss_pred CCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVV 559 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 559 (603)
.+. +...|..++.+|...|++++|+..|+++++.. +.+..++..+..++.+.|+++++.
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 45555556666666666666666666665543 334445555555555555555443
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.63 E-value=3.7e-07 Score=72.11 Aligned_cols=112 Identities=13% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC----HHHHH
Q 037409 470 ETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC--VPS----EVTFC 543 (603)
Q Consensus 470 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 543 (603)
..+..++..+...|++++|...|++..+..+. +...+..++.++...|++++|+..++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 44555666666666666666666666665433 555666666666666777777776666665420 111 55566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL 585 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 585 (603)
.++.++...|++++|.+.++++.+.. |++.....+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 66667777777777777777766543 3444444444443
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.61 E-value=1.1e-06 Score=69.27 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=62.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHhhCCCCCCH---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 037409 473 NCLINGLCKMGRLKTACKLFHRLQHKGPIPDV---VTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS---EVTFCTLL 546 (603)
Q Consensus 473 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 546 (603)
..++..+...|++++|...|+++.+..+. +. ..+..++.++...|++++|+..++++++.. +.+ ...+..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34455666677777777777776664433 22 356666677777777777777777776653 333 55566777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 547 RGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
.++...|++++|...++++++..+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC
Confidence 777777777777777777776544
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.59 E-value=1.5e-07 Score=92.85 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=73.6
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
..+.+.|++++|...++++.+..+. +...|..++.++.+.|++++|++.++++++.. +.+...+..++.+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445566677777777766665444 56666677777777777777777777777654 445666667777777777777
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHH--HHcCCcHHHHHHHHH
Q 037409 557 KVVVLLHKMAAEKLVVSDLSLSSKVVDL--LSKDKKYRECLNQFR 599 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~eA~~~~~ 599 (603)
+|.+.++++++..+. +...+..++.+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777665544 44444445544 666677777776665
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.58 E-value=3.9e-07 Score=86.44 Aligned_cols=92 Identities=11% Similarity=0.048 Sum_probs=78.7
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVV 582 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 582 (603)
+...|..++.+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...++++++..+. +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 45678888999999999999999999999875 557888899999999999999999999999887654 788888899
Q ss_pred HHHHcCCcHHHHHHH
Q 037409 583 DLLSKDKKYRECLNQ 597 (603)
Q Consensus 583 ~~~~~~g~~~eA~~~ 597 (603)
.++.+.|+.+++.+.
T Consensus 349 ~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 349 KVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998988887654
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.57 E-value=4.5e-07 Score=74.94 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCH-HHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDL-SLSSKVV 582 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~ 582 (603)
...|..++.+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|...++++++..+. +. .+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA--AASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 4567777777778888888888888877764 556777777788888888888888888887776543 44 3444444
Q ss_pred HHHH
Q 037409 583 DLLS 586 (603)
Q Consensus 583 ~~~~ 586 (603)
.+..
T Consensus 140 ~~~~ 143 (162)
T 3rkv_A 140 IVTE 143 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=2.8e-06 Score=68.72 Aligned_cols=114 Identities=15% Similarity=-0.075 Sum_probs=81.8
Q ss_pred CHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHH
Q 037409 433 DSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELR---IETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCST 509 (603)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 509 (603)
+...+..+...+...|++++|...|++..+.. +.+ ...+..+..+|...|++++|...+++..+..+. +...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHHH
Confidence 45566667777777788888888887777643 222 567777888888888888888888888776544 6777778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 510 MIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 510 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
++.++...|++++|...++++++.. +.+...+..+....
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHH
Confidence 8888888888888888888888764 44555555554443
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.54 E-value=7.8e-07 Score=70.10 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC---HHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE---VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD---LSLSSK 580 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 580 (603)
+..++..+...|++++|+..|+++++.. +.+. ..+..++.++...|++++|...++++++..+. + +..+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--CcccHHHHHH
Confidence 4557788899999999999999999864 3344 58889999999999999999999999987665 4 678899
Q ss_pred HHHHHHcCCcHHHHHHHHHhhc
Q 037409 581 VVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 581 l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++.+|.+.|++++|+..+++++
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999875
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=2e-06 Score=84.33 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC---CH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK--NC--VP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK--LVVS---DL 575 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~---~~ 575 (603)
++..++..+...|++++|..+++++... +. .+ ...++..++..|...|++++|..++++..... ...| ..
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 3444555555555555555555544322 00 01 12234445555555555555555555544211 1101 01
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 576 SLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 576 ~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
..+..++..+...|++++|...+.+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2344444445555555555554443
No 179
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.53 E-value=9.6e-07 Score=70.42 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVP-------SE-----VTFCTLLRGFVQNNKKSKVVVLLHKMAAE------ 568 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------ 568 (603)
+...+..+...|++++|+..|+++++.. +. +. ..|..++.++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444455555555555555555555542 11 12 26666777777777777777777777765
Q ss_pred -CCCCCCHHHH----HHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 569 -KLVVSDLSLS----SKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 569 -~~~~~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
++. +...| ...+.+|...|+++||+..|++.+
T Consensus 93 ~~pd--~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 93 LNQD--EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TTST--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCc--hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 433 56666 777777777777777777777653
No 180
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.52 E-value=4.3e-06 Score=83.87 Aligned_cols=174 Identities=10% Similarity=-0.069 Sum_probs=139.0
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC----------HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF----------VLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG 483 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 483 (603)
..++|++.++++...++. +...|+.-..++...|+ ++++++.++.+.+.. +.+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 345677888877765433 45556655555555555 889999999988876 668888888888888888
Q ss_pred --ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 037409 484 --RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG-QMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN-------- 552 (603)
Q Consensus 484 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 552 (603)
+++++...++++.+.++. |...|+.-..++...| .++++++.++++++.+ +.+..+|.....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 679999999999998877 8889999999988888 8899999999999876 66888888887777663
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHH
Q 037409 553 ------NKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRE 593 (603)
Q Consensus 553 ------g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~e 593 (603)
+.++++.+.+++++...+. +...|..+..++.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~--~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS--CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC--CccHHHHHHHHHhcCCCccc
Confidence 5579999999999987765 88888889999988887544
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.52 E-value=1.1e-06 Score=69.39 Aligned_cols=112 Identities=9% Similarity=0.001 Sum_probs=83.2
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC--CC----HhHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPI--PD----VVTCS 508 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~ 508 (603)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+..+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 455667777778888888888888877765 556777888888888888888888888887775332 12 66778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.++.++...|++++|.+.++++.+.. |+......+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 88888888888888988888888853 5666665555444
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.51 E-value=4.4e-07 Score=74.89 Aligned_cols=95 Identities=7% Similarity=-0.035 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCCHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNC-VPS----EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL----VVSDLS 576 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~ 576 (603)
++..++..+...|++++|...++++++... .++ ..++..++..+...|++++|...+++..+... .+....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 344444444455555555555444433200 001 22344444555555555555555555442210 001123
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
.+..++.++...|++++|.+.+++
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 444455555555555555555544
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.51 E-value=2.1e-07 Score=72.00 Aligned_cols=88 Identities=15% Similarity=0.022 Sum_probs=59.1
Q ss_pred CCChhHHHHHHHHHhhCC---CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037409 482 MGRLKTACKLFHRLQHKG---PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 558 (603)
.|++++|+..|++.++.+ +. +...+..++.++...|++++|+..++++++.. +.+..++..++.++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 466777777777777653 22 45566777777777777777777777777764 45566777777777777777777
Q ss_pred HHHHHHHHHCCCC
Q 037409 559 VVLLHKMAAEKLV 571 (603)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (603)
...++++++..+.
T Consensus 81 ~~~~~~al~~~p~ 93 (117)
T 3k9i_A 81 VELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCC
Confidence 7777777765544
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.46 E-value=9.7e-07 Score=72.88 Aligned_cols=97 Identities=9% Similarity=-0.007 Sum_probs=77.8
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAK--------N---------CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
...+...+..+.+.|++++|+..|.++++. . .+.+..+|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344566666677777777777777776654 0 02234678899999999999999999999999
Q ss_pred HCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 567 AEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 567 ~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+..+. ++..+..++.+|...|++++|+..|++.+
T Consensus 91 ~~~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KREET--NEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcCCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 87664 89999999999999999999999998864
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.45 E-value=4.4e-07 Score=85.10 Aligned_cols=146 Identities=10% Similarity=-0.025 Sum_probs=62.1
Q ss_pred HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHH
Q 037409 435 FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWL 514 (603)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 514 (603)
..+..+...+.+.|++++|...|++..+.. |+... +...|+.+++...+. ...|..++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 445556666667777777777777776543 22210 111111222111110 02455566666
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH-HcCCcHHH
Q 037409 515 CKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLL-SKDKKYRE 593 (603)
Q Consensus 515 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~e 593 (603)
.+.|++++|+..++++++.. +.+...+..++.+|...|++++|...++++++..+. +...+..+..+. ...+..++
T Consensus 241 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666653 345556666666666666666666666666554433 444455555442 23445555
Q ss_pred HHHHHHhhc
Q 037409 594 CLNQFRHLL 602 (603)
Q Consensus 594 A~~~~~~~l 602 (603)
+.++|++|+
T Consensus 318 a~~~~~~~l 326 (338)
T 2if4_A 318 QKEMYKGIF 326 (338)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 566665553
No 186
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=2.3e-07 Score=70.90 Aligned_cols=97 Identities=7% Similarity=-0.020 Sum_probs=69.7
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC------HH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSD------LS 576 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~ 576 (603)
+...|..++..+...|++++|++.++++++.. +.+...+..++.++...|++++|+..++++++..+. + ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST--AEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS--TTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ccHHHHHHH
Confidence 45566777777777888888888888877764 456777777788888888888888888887765543 3 55
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+..++.++...|++++|+..+++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 66677777777777777766665543
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.42 E-value=9.2e-07 Score=87.15 Aligned_cols=118 Identities=8% Similarity=-0.049 Sum_probs=95.7
Q ss_pred hhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcch
Q 037409 55 HKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSG 134 (603)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 134 (603)
.....|++++|+..|+++++..|. +..+|..++.++.+.|++++|+..++++++.. +.+..++..++.++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344578999999999999998766 78899999999999999999999999999886 6678888999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHH--HHhcCCHhHHHHHHH
Q 037409 135 AFVVLGRILRSCFTPNTVTFNFLING--LCAEGRIMEAARLFK 175 (603)
Q Consensus 135 a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 175 (603)
|...++++.+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999887543 44455555555 778899999999888
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.42 E-value=2.9e-06 Score=80.37 Aligned_cols=92 Identities=10% Similarity=-0.068 Sum_probs=77.9
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
.+...|..+..+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. +.+...+..+.
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~ 348 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 35678889999999999999999999999997665 78889999999999999999999999999875 55777888888
Q ss_pred HHHHhcCCHHHHHH
Q 037409 547 RGFVQNNKKSKVVV 560 (603)
Q Consensus 547 ~~~~~~g~~~~a~~ 560 (603)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777776654
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.1e-05 Score=76.94 Aligned_cols=197 Identities=8% Similarity=-0.063 Sum_probs=96.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC
Q 037409 336 MDGFCLVGRISRARELFVSMVSKGCRHDV----------------YSYNILINANCKDQKVEDAVCLYREMLSERI-RPS 398 (603)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~ 398 (603)
...+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+..+..... .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45566778888888888888776322111 0144555666666666666666665543210 011
Q ss_pred H----hhHHHHHHHHHhcCCHHHHHHHHHHHhh----CCCCCC-HHhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CC--
Q 037409 399 V----ITYNTLLSGLFQVGNLGDALKLIDKMQL----NDVVPD-SFTFATYIDGLCKNGFVLEAVQVFQAIRNC--KC-- 465 (603)
Q Consensus 399 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-- 465 (603)
. .+.+.+...+...|+++.+..+++.... .+..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1112222223344556666665555421 111111 234445555555566666666665554431 11
Q ss_pred -CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC---CCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 037409 466 -ELRIETYNCLINGLCKMGRLKTACKLFHRLQHK---GPIPD---VVTCSTMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 466 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
+.....+..++..|...|++++|..++++.... ...|. ...+..++..+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 111344555555566666666666665554431 11111 12334444445555555665555555544
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.41 E-value=5.4e-07 Score=69.58 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=65.7
Q ss_pred hCCCHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHH
Q 037409 446 KNGFVLEAVQVFQAIRNCK--CELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 446 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
..|++++|+..|+++.+.+ .+.+...+..++.+|...|++++|...|+++++.++. +...+..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHH
Confidence 3577788888888887653 2345677888888888888888888888888887665 677788888888888888888
Q ss_pred HHHHHHHHHCC
Q 037409 524 NDLLLDMEAKN 534 (603)
Q Consensus 524 ~~~~~~~~~~~ 534 (603)
+..++++++..
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888888764
No 191
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.40 E-value=3.7e-06 Score=82.48 Aligned_cols=133 Identities=11% Similarity=-0.028 Sum_probs=97.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--------------HHhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPD--------------SFTFATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
....+..+...+.+.|++++|+..|++......... ...+..+..++.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777788888888888888888876432211 467777888888888888888888888876
Q ss_pred CCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHH-HHHHHHH
Q 037409 464 KCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKAND-LLLDMEA 532 (603)
Q Consensus 464 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~ 532 (603)
. +.+...|..+..+|...|++++|...|+++++..+. +...+..+..++...++++++.+ .+++|..
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6 557788888888888888888888888888887655 66777888888888887777654 4555544
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.38 E-value=4.7e-06 Score=66.46 Aligned_cols=97 Identities=9% Similarity=-0.059 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCCCCC------C-----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC------
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKGPIP------D-----VVTCSTMIHWLCKEGQMDKANDLLLDMEAK------ 533 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 533 (603)
.+...+..+.+.|++++|+..|++.++..+.. + ...|..++.++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666666643331 2 237888888888888888888888888875
Q ss_pred -CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 037409 534 -NCVPSEVTF----CTLLRGFVQNNKKSKVVVLLHKMAAE 568 (603)
Q Consensus 534 -~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 568 (603)
+ +.+...| ...+.++...|++++|+..|+++++.
T Consensus 93 ~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 93 LN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp TT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4 3345677 88888999999999999999998864
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.38 E-value=1.1e-05 Score=80.95 Aligned_cols=175 Identities=10% Similarity=-0.056 Sum_probs=147.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQ----------YDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKM 129 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (603)
...++|++.+++++..+|. +..+|+.-..++.+.|+ +++++..++.+++.. +-+..+|..-.-++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3457899999999999876 78899988888888887 999999999999876 66788999988889999
Q ss_pred C--CcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhc-------
Q 037409 130 G--ITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG-RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRT------- 199 (603)
Q Consensus 130 g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 199 (603)
| ++++++..++++.+..+. |..+|+.-..++.+.| .++++++.++++.+.. +.|..+|+....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 9 669999999999998765 8889998888888889 8999999999998875 55788999888777663
Q ss_pred -------CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhH
Q 037409 200 -------RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDK 242 (603)
Q Consensus 200 -------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 242 (603)
+.++++++.+++++.. .|.|..+|.-+...+.+.++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~----~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFT----DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHH----CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhh----CCCCccHHHHHHHHHhcCCCccc
Confidence 4578999999999987 46678888888777777776444
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.37 E-value=1.8e-06 Score=66.35 Aligned_cols=80 Identities=11% Similarity=0.008 Sum_probs=49.0
Q ss_pred HHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 487 TACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 487 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
.|...|++..+..+. +...+..++.++...|++++|+..++++++.. +.+...+..++.++...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455556666555443 55566666666666666666666666666653 3445566666666666666666666666665
Q ss_pred HC
Q 037409 567 AE 568 (603)
Q Consensus 567 ~~ 568 (603)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.35 E-value=2.8e-06 Score=69.88 Aligned_cols=132 Identities=15% Similarity=0.071 Sum_probs=87.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC----hHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC-CC----Hh
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCKCE-LR----IETYNCLINGLCKMGRLKTACKLFHRLQHKGPI-PD----VV 505 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~ 505 (603)
++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..+.... ++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455566666677777777777665542100 11 246677777778888888888888776653111 11 34
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAK----NCVP-SEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
.+..++.++...|++++|.+.+++.++. +.++ ...++..++..+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5677788888888888888888887653 1111 134567788888889999999998888775
No 196
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.28 E-value=2e-06 Score=80.65 Aligned_cols=153 Identities=13% Similarity=-0.008 Sum_probs=89.0
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 398 SVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
....+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ ....|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 3556777888889999999999999998764 233321 22334444443322 1247888999
Q ss_pred HHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 037409 478 GLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRG-FVQNNKKS 556 (603)
Q Consensus 478 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 556 (603)
+|.+.|++++|+..+++.++.++. +...|..++.+|...|++++|+..|+++++.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987665 78889999999999999999999999998864 3455566666665 34456778
Q ss_pred HHHHHHHHHHHCCCC
Q 037409 557 KVVVLLHKMAAEKLV 571 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~ 571 (603)
++...|+++....+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 888899998876544
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.19 E-value=1.4e-05 Score=58.12 Aligned_cols=82 Identities=9% Similarity=0.064 Sum_probs=53.8
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q 037409 504 VVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVD 583 (603)
Q Consensus 504 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 583 (603)
...+..++..+...|++++|+..++++++.. +.+...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 4456666666777777777777777776654 445666667777777777777777777777665543 5666666666
Q ss_pred HHHcC
Q 037409 584 LLSKD 588 (603)
Q Consensus 584 ~~~~~ 588 (603)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65543
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.17 E-value=8.8e-06 Score=62.40 Aligned_cols=79 Identities=10% Similarity=-0.023 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 521 DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
++|+..++++++.. +.+...+..++.++...|++++|...++++++..+. +...+..++.+|...|++++|+..|++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35788899998875 667889999999999999999999999999987664 788999999999999999999999988
Q ss_pred hc
Q 037409 601 LL 602 (603)
Q Consensus 601 ~l 602 (603)
.+
T Consensus 79 al 80 (115)
T 2kat_A 79 GL 80 (115)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.12 E-value=0.0001 Score=58.45 Aligned_cols=110 Identities=10% Similarity=-0.038 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH----cCChhHHH
Q 037409 449 FVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK----EGQMDKAN 524 (603)
Q Consensus 449 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 524 (603)
++++|.+.|++..+.+ .+... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5666677776666655 22222 5556666666666777777776652 55666666666666 66777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 037409 525 DLLLDMEAKNCVPSEVTFCTLLRGFVQ----NNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 569 (603)
++|++..+.| +...+..|+..|.. .+++++|..++++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777777654 45666667777776 677777777777777654
No 200
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=3.2e-05 Score=75.54 Aligned_cols=127 Identities=9% Similarity=0.014 Sum_probs=89.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhC-----CCC-CC-HhHH
Q 037409 442 DGLCKNGFVLEAVQVFQAIRNC-----K--CELRIETYNCLINGLCKMGRLKTACKLFHRLQHK-----GPI-PD-VVTC 507 (603)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~ 507 (603)
..+...|++++|+.++++.++. | .+....+++.|+.+|...|++++|+.++++.++. |+. |+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456788889998888877642 2 1112467788888888888888888888877652 332 22 3467
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 508 STMIHWLCKEGQMDKANDLLLDMEAK-----NCVPS---EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEK 569 (603)
Q Consensus 508 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 569 (603)
+.|+..|..+|++++|+.+++++++. | +.. ..+...+..++...|.+++|...|+++.+..
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888887742 4 222 2334567777788888888888888887643
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.11 E-value=8.3e-06 Score=64.87 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChh----------HHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLK----------TACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
+.+++|.+.++...+.. |.+...|..+..++...++++ +|+..|++.++.++. +...|..++.+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 34455555555555444 444555555555555444332 444444444443333 33444444444443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.08 E-value=9.6e-06 Score=60.25 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=31.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+...+..++.++...|++++|+..|+++++.+ +.+...|..++.+|...|++++|...+++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555555555555555555443 33344455555555555555555555555443
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.08 E-value=1.4e-05 Score=60.69 Aligned_cols=93 Identities=18% Similarity=0.063 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS------EVT 541 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~ 541 (603)
+...+..+...+...|++++|...|++..+..+. +...|..++.++...|++++|++.++++++.. +.+ ...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence 3455666777777777777777777777776554 56677777777777777777777777777653 223 455
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLL 562 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~ 562 (603)
+..++.++...|++++|...+
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHH
Confidence 566666666666655554433
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.08 E-value=3.5e-05 Score=55.85 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 468 RIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 468 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
+...+..+...+...|++++|...+++..+..+. +...+..++.++...|++++|+..++++.+.. +.+...+..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 3456677777777888888888888877776544 56677778888888888888888888887764 445666777766
Q ss_pred HHHhcC
Q 037409 548 GFVQNN 553 (603)
Q Consensus 548 ~~~~~g 553 (603)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665443
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.04 E-value=0.00011 Score=58.36 Aligned_cols=111 Identities=8% Similarity=-0.071 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCcchH
Q 037409 60 ITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK----MGITSGA 135 (603)
Q Consensus 60 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 135 (603)
.++++|+.+|+++.+.+.. . +. +...|...+..++|+..|+++.+.| ++..+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 3677888888888776532 2 23 6666766677788888888888765 56677777777776 6777788
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHhHHHHHHHHHHhcC
Q 037409 136 FVVLGRILRSCFTPNTVTFNFLINGLCA----EGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 181 (603)
..+|++..+.| +...+..|...|.. .+++++|..+|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887777764 56666777777776 677777777777777655
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.02 E-value=1.6e-05 Score=63.29 Aligned_cols=89 Identities=7% Similarity=-0.008 Sum_probs=64.2
Q ss_pred HhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCCh----------hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQM----------DKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
.+.+.+++|...+++..+.++. +...|..++.++...+++ ++|+..|+++++.+ +.+..+|..++.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3455677788888887777665 777777777777776654 47888888888765 45667777788887
Q ss_pred HhcC-----------CHHHHHHHHHHHHHCCC
Q 037409 550 VQNN-----------KKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 550 ~~~g-----------~~~~a~~~~~~~~~~~~ 570 (603)
...| ++++|++.|+++++.++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 7664 77888888888877553
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.98 E-value=2.5e-05 Score=76.37 Aligned_cols=128 Identities=9% Similarity=-0.068 Sum_probs=92.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC---CCCC----CHHhHHHHHHHHHhCCCHHHHHHHHHHHHH-----cC--CCCChHH
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLN---DVVP----DSFTFATYIDGLCKNGFVLEAVQVFQAIRN-----CK--CELRIET 471 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~--~~~~~~~ 471 (603)
+..+..+|++++|+.++++..+. -..| ...+++.+...|...|++++|..++++.++ .| .+....+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566789999999998876432 1112 235677888889999999999999988764 22 1123467
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhh-----CCCC-CC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQH-----KGPI-PD-VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
++.|+..|...|++++|+.++++..+ .|+. |+ ..+.+.+..++...+.+++|+.++.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999998765 2443 11 234566777788888899999999888765
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.94 E-value=3.9e-05 Score=56.89 Aligned_cols=65 Identities=8% Similarity=0.158 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.+...+..++.+|...|++++|+..++++++..+. ++..+..++.+|...|++++|++.+++.+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457888999999999999999999999999998765 78899999999999999999999998764
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.83 E-value=0.0001 Score=54.48 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=35.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 511 IHWLCKEGQMDKANDLLLDMEAKNCVPSEV-TFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 511 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..+...|++++|+..++++++.. +.+.. .+..++.++...|++++|...++++++..+.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 444556666666666666666553 33445 5666666666666666666666666655443
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.56 E-value=0.0015 Score=59.94 Aligned_cols=144 Identities=7% Similarity=-0.046 Sum_probs=96.3
Q ss_pred CCCCHHHHHHHHHHHH--hcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cC-Cc----chHHHHHHHHH
Q 037409 77 PSPGMTSFTILLTMLA--KNK---QYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK---MG-IT----SGAFVVLGRIL 143 (603)
Q Consensus 77 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-~~----~~a~~~~~~~~ 143 (603)
++.+..+|...+++.. ..+ +..+|+.+|+++++.. |.....+..+.-++.. .+ .. ......++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4457777777666543 333 3578888999988875 4445566554444421 11 11 11112222221
Q ss_pred HC-CCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCC
Q 037409 144 RS-CFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKP 222 (603)
Q Consensus 144 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 222 (603)
.. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|+++... .|
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL-----~P 341 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL-----RP 341 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SC
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CC
Confidence 11 124467788888777777899999999999999884 78888888888999999999999999999986 36
Q ss_pred ChhhHH
Q 037409 223 DVVTYN 228 (603)
Q Consensus 223 ~~~~~~ 228 (603)
...+|.
T Consensus 342 ~~~t~~ 347 (372)
T 3ly7_A 342 GANTLY 347 (372)
T ss_dssp SHHHHH
T ss_pred CcChHH
Confidence 666654
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.53 E-value=0.00019 Score=68.97 Aligned_cols=87 Identities=10% Similarity=-0.081 Sum_probs=64.5
Q ss_pred hCCChhHHHHHHHHHhhC-----CCC-CC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHK-----GPI-PD-VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----N-CVPS-EVTFCTLL 546 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~ 546 (603)
..|++++|+.++++.++. |+. |+ ..+++.++.+|...|++++|+.+++++++. | -.|+ ..+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567889999998887652 222 11 356788888899999999999998888743 3 0122 34578888
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037409 547 RGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~~ 567 (603)
..|...|++++|..+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 889999999999999888885
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.49 E-value=0.00013 Score=53.78 Aligned_cols=59 Identities=19% Similarity=0.150 Sum_probs=40.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHhhCCCCCCHh-HHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037409 475 LINGLCKMGRLKTACKLFHRLQHKGPIPDVV-TCSTMIHWLCKEGQMDKANDLLLDMEAKN 534 (603)
Q Consensus 475 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 534 (603)
.+..+.+.|++++|...++++.+..+. +.. .|..++.++...|++++|+..|+++++.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566677777777777777765444 555 67777777777777777777777777654
No 213
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.47 E-value=0.0025 Score=58.59 Aligned_cols=143 Identities=10% Similarity=-0.036 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHH--HhcCC---cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHh---cC--C---HhHHHHHHHHHHh
Q 037409 113 FPDLFVLNLLINCL--CKMGI---TSGAFVVLGRILRSCFTPNTVTFNFLINGLCA---EG--R---IMEAARLFKKLNV 179 (603)
Q Consensus 113 ~~~~~~~~~l~~~~--~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g--~---~~~A~~~~~~~~~ 179 (603)
+.+..+|...+++. ...++ ..+|+.+|+++++..+. ....|..+..+|.. .+ . .......++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 55667777766543 33333 47899999999998554 44555544444431 11 1 1111122222211
Q ss_pred c-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCC
Q 037409 180 F-ACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPN 258 (603)
Q Consensus 180 ~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 258 (603)
. ..+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++.... .|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 1 125577788887777777899999999999999963 67778888899999999999999999999886 455
Q ss_pred hhhHH
Q 037409 259 VITYN 263 (603)
Q Consensus 259 ~~~~~ 263 (603)
..+|.
T Consensus 343 ~~t~~ 347 (372)
T 3ly7_A 343 ANTLY 347 (372)
T ss_dssp HHHHH
T ss_pred cChHH
Confidence 55554
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.0032 Score=45.30 Aligned_cols=67 Identities=7% Similarity=-0.053 Sum_probs=41.6
Q ss_pred CHhHHHHHHHHHHHcCC---hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 037409 503 DVVTCSTMIHWLCKEGQ---MDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKL 570 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 570 (603)
|...+..++.++...++ .++|..+++++++.+ +.+......++..+.+.|++++|+..|+++++..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55556666666554433 466666666666654 44566666666666667777777777766665543
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.39 E-value=0.00087 Score=48.35 Aligned_cols=65 Identities=12% Similarity=0.120 Sum_probs=57.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNK---KSKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
+.++..+..++.++...++ .++|..+++++++..+. ++.....++..+.+.|++++|+..|++++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5688889999998865555 69999999999998775 89999999999999999999999999986
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.38 E-value=0.00079 Score=64.73 Aligned_cols=97 Identities=7% Similarity=-0.094 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhhCC---CCCC----HhHHHHHHHHHHHcCChhHHHHHHHHHHHC-----C-CCC
Q 037409 471 TYNCLINGLCKMGRLKTACKLFHRLQHKG---PIPD----VVTCSTMIHWLCKEGQMDKANDLLLDMEAK-----N-CVP 537 (603)
Q Consensus 471 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~ 537 (603)
.....+..+.+.|++++|+.++++.++.. ..|+ ..+++.++.+|...|++++|+.+++++++. | ..|
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 33344555667889999999998887631 1122 456788888899999999999999888743 2 011
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 538 S-EVTFCTLLRGFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 538 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 567 (603)
+ ..++..|+..|...|++++|..+++++++
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1 34578888899999999999999999885
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.33 E-value=0.00076 Score=52.96 Aligned_cols=86 Identities=15% Similarity=0.064 Sum_probs=72.3
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 037409 484 RLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEG---QMDKANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSKV 558 (603)
Q Consensus 484 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 558 (603)
.+..+++-|.+..+.++ ++..+...+.+++.+.+ +.++++.++++..+.+ .| +...+..|+-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45677888888877766 58888899999999988 6679999999999875 34 467788899999999999999
Q ss_pred HHHHHHHHHCCCC
Q 037409 559 VVLLHKMAAEKLV 571 (603)
Q Consensus 559 ~~~~~~~~~~~~~ 571 (603)
.++++.+++..|.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999987664
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.28 E-value=0.0023 Score=50.29 Aligned_cols=86 Identities=13% Similarity=0.023 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCC---ChhHHHHHHHHHhhCC-CCCCHhHHHHHHHHHHHcCChhHH
Q 037409 448 GFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMG---RLKTACKLFHRLQHKG-PIPDVVTCSTMIHWLCKEGQMDKA 523 (603)
Q Consensus 448 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A 523 (603)
+....+.+.|.+..+.+ +++..+...+..++++.+ +++++..+|+...+.+ +.-+...+-.+.-++.+.|++++|
T Consensus 12 ~~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 34567777777777766 578899999999999988 6779999999999865 211456677788889999999999
Q ss_pred HHHHHHHHHCC
Q 037409 524 NDLLLDMEAKN 534 (603)
Q Consensus 524 ~~~~~~~~~~~ 534 (603)
.++++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999999964
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.19 E-value=0.1 Score=45.89 Aligned_cols=85 Identities=15% Similarity=0.084 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHhc-----CChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhc-
Q 037409 167 IMEAARLFKKLNVFACDPN---VVTFNTLINGLCRT-----RNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKD- 237 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 237 (603)
...|...+++..+. +|+ -..|..+...|... |+.++|.+.|++.++.+ ...+..++....+.++..
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---P~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---SAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---CTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---CCCCchHHHHHHHHHHHhc
Confidence 35666666776665 455 45677777777773 77777777777777753 111366666677777664
Q ss_pred CChhHHHHHHHHHhhCCCC
Q 037409 238 GFVDKAKELLLQMKDRNIN 256 (603)
Q Consensus 238 g~~~~a~~~~~~~~~~~~~ 256 (603)
|+.+++.+.+++.......
T Consensus 254 gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHcCCCC
Confidence 7777777777777776443
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.00 E-value=0.0038 Score=59.98 Aligned_cols=98 Identities=15% Similarity=0.053 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCC----ChHHHHHHHHHHHhCCChhHHHHHHHHHhhC-----CCC-C
Q 037409 436 TFATYIDGLCKNGFVLEAVQVFQAIRNCK---CEL----RIETYNCLINGLCKMGRLKTACKLFHRLQHK-----GPI-P 502 (603)
Q Consensus 436 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p 502 (603)
.....+..+.+.|++++|+.++++.++.. ..+ ...+++.++.+|...|++++|+.+++++++. |+. |
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 33444566778899999999999988531 122 2467899999999999999999999988752 322 2
Q ss_pred C-HhHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 037409 503 D-VVTCSTMIHWLCKEGQMDKANDLLLDMEAK 533 (603)
Q Consensus 503 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 533 (603)
+ ..+++.|+..|..+|++++|+.+++++++.
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2 446889999999999999999999999886
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0036 Score=60.06 Aligned_cols=61 Identities=8% Similarity=0.002 Sum_probs=27.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 261 TYNSLICGFCCVDDWKEAKCLFIEMMDN-----G-VQPD-VVTFNAMINYNCKDGKMDKVNRLLELMI 321 (603)
Q Consensus 261 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 321 (603)
+++.|...|...|++++|+.++++.+.. | -.|+ ..+++.|...|...|++++|..++++.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 3444444444444444444444444321 1 0111 2344555555555555555555555443
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.00 E-value=0.068 Score=40.24 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=65.5
Q ss_pred hCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037409 481 KMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVV 560 (603)
Q Consensus 481 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 560 (603)
.+|++......+-.+-. +....+..+..+..+|+-++-.+++..++... +|++..+..++.+|.+.|+..+|.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~e 146 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATT 146 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHH
Confidence 34555555555544432 34456777788889999999999999876543 7899999999999999999999999
Q ss_pred HHHHHHHCCCC
Q 037409 561 LLHKMAAEKLV 571 (603)
Q Consensus 561 ~~~~~~~~~~~ 571 (603)
+++++.+.|++
T Consensus 147 Ll~~AC~kG~k 157 (172)
T 1wy6_A 147 LLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTTCH
T ss_pred HHHHHHHhhhH
Confidence 99999998875
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.90 E-value=0.0037 Score=46.32 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=55.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH
Q 037409 503 DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKN------CVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS 576 (603)
Q Consensus 503 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (603)
+..-+..++..+...|+++.|+..++++++.. -.+...++..|+.++.+.|++++|...++++. ...|.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al--~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL--ELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH--hcCCCCHH
Confidence 44556678888889999999999988887641 12356678888889999999999999888886 56644444
Q ss_pred HHHH
Q 037409 577 LSSK 580 (603)
Q Consensus 577 ~~~~ 580 (603)
+...
T Consensus 82 ~~~n 85 (104)
T 2v5f_A 82 ANGN 85 (104)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4333
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.89 E-value=6.3e-07 Score=83.26 Aligned_cols=265 Identities=11% Similarity=0.078 Sum_probs=154.3
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 037409 115 DLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLIN 194 (603)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 194 (603)
.+..|+.|+++....+...+|+..|= + ..|+..|..++....+.|.+++-++.+.-..+. ..+...=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 34566677777777776666655431 1 125556666777777777777777766555443 233344456666
Q ss_pred HHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 037409 195 GLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDD 274 (603)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 274 (603)
+|++.++..+-.+. + ..||..-...+.+-|...|.++.|.-+|..+.. |..|...+.+.|+
T Consensus 125 ayAk~~rL~elEef----l------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~ 185 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----I------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGE 185 (624)
T ss_dssp HHHTSCSSSTTTST----T------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSG
T ss_pred HHHhhCcHHHHHHH----H------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHH
Confidence 77777665442221 1 235555556667777777777776666644332 3344555566676
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 275 WKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRARELFVS 354 (603)
Q Consensus 275 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 354 (603)
+..|.+.-++ ..++.||..+-.+|...+++.-|...--.++-. +| -...++..|...|-+++-+.+++.
T Consensus 186 yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 186 YQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp GGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6666543322 236778888888899888887776654444422 11 223456668888888888888888
Q ss_pred HHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC------CHhhHHHHHHHHHhcCCHHHHH
Q 037409 355 MVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSE-RIRP------SVITYNTLLSGLFQVGNLGDAL 419 (603)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~ 419 (603)
.+... ......|+-|.-.|++- ++++..+.++..-.+ +++. ....|..++-.|.+-.+++.|.
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 76432 33556677777777765 455555544433222 1111 1234555555555555555443
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.86 E-value=0.014 Score=43.04 Aligned_cols=76 Identities=13% Similarity=-0.028 Sum_probs=61.0
Q ss_pred CCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCC------CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 466 ELRIETYNCLINGLCKMGRLKTACKLFHRLQHKG------PIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 466 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
..+...+..++..+.+.|+++.|...|+.+.+.. ..+...++..++.++.+.|++++|+.+++++++.. |.+.
T Consensus 2 ~Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~ 80 (104)
T 2v5f_A 2 FLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQ 80 (104)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCH
Confidence 3456677889999999999999999999887641 12357788999999999999999999999999864 3344
Q ss_pred HHH
Q 037409 540 VTF 542 (603)
Q Consensus 540 ~~~ 542 (603)
.+.
T Consensus 81 ~~~ 83 (104)
T 2v5f_A 81 RAN 83 (104)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.72 E-value=0.016 Score=43.71 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=59.0
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 037409 483 GRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDK---ANDLLLDMEAKNCVP--SEVTFCTLLRGFVQNNKKSK 557 (603)
Q Consensus 483 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 557 (603)
..+..+.+-+.+....|. |+..+--.+.+++.+..+... ++.+++...+.+ .| .......|+-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344555556665555444 466677777778877776655 777888777654 23 34556677778888888888
Q ss_pred HHHHHHHHHHCCCC
Q 037409 558 VVVLLHKMAAEKLV 571 (603)
Q Consensus 558 a~~~~~~~~~~~~~ 571 (603)
|.+.++.+++..|.
T Consensus 93 A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCC
Confidence 88888888876554
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.63 E-value=2.3e-05 Score=73.16 Aligned_cols=206 Identities=11% Similarity=0.010 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLING 160 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 160 (603)
+.+|..++.+..+.++..+|++.|-++ -|+..|..++....+.|.+++-...+..+.+..- +..+=+.|+-+
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a 125 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA 125 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence 456888888888888888877655332 2555677788888888888888888776665533 34445677888
Q ss_pred HHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcC-----------------CccCCC
Q 037409 161 LCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFG-----------------AICKPD 223 (603)
Q Consensus 161 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------------~~~~~~ 223 (603)
|++.++..+-.+. .. .||..-...+..-|...|.++.|.-+|..+..-.. ..-..+
T Consensus 126 yAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns 198 (624)
T 3lvg_A 126 LAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS 198 (624)
T ss_dssp HHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred HHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8888875543322 11 45666666667777777777776666544322100 001235
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037409 224 VVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINY 303 (603)
Q Consensus 224 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 303 (603)
+.+|..+..+|...+.+.-|.-.--.+.-. +.-...++..|-..|.+++-+.+++.-+... ......|+-|.-.
T Consensus 199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaIL 272 (624)
T 3lvg_A 199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAIL 272 (624)
T ss_dssp SCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHH
Confidence 566776777777777666554433333221 1112234445666677777666666655332 3455566666666
Q ss_pred HHhc
Q 037409 304 NCKD 307 (603)
Q Consensus 304 ~~~~ 307 (603)
|++-
T Consensus 273 YsKY 276 (624)
T 3lvg_A 273 YSKF 276 (624)
T ss_dssp HHSS
T ss_pred HHhc
Confidence 6554
No 228
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.032 Score=59.31 Aligned_cols=154 Identities=14% Similarity=0.062 Sum_probs=87.1
Q ss_pred HHHhcCChHHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHH
Q 037409 373 ANCKDQKVEDAVC-LYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVL 451 (603)
Q Consensus 373 ~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 451 (603)
.....+++++|.+ ++..+ ++......++..+.+.|.++.|+++.+ +... -.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~~---~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQDQ---KFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHHH---HHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccch---heehhhhcCCHH
Confidence 3445667777655 43211 112223666666677777777766542 1111 122334567777
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDME 531 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 531 (603)
+|.++.+. -.+...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...++.+.+.
T Consensus 670 ~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~ 734 (814)
T 3mkq_A 670 LARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE 734 (814)
T ss_dssp HHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence 77776433 23566777777777777777777777777653 3344445555666666666655555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 532 AKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 532 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
..| + +.....+|.+.|++++|++++.++
T Consensus 735 ~~~---~---~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 735 TTG---K---FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HTT---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HcC---c---hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 543 1 122233455667777776666554
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.59 E-value=0.029 Score=49.36 Aligned_cols=87 Identities=13% Similarity=0.103 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHH-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHH
Q 037409 485 LKTACKLFHRLQHKGPIP-DVVTCSTMIHWLCK-----EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQN-NKKSK 557 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 557 (603)
...|..++++.++.++.- +...|..++..|.+ -|+.++|.++|+++++.+..-+..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 345666666666643221 24456666666666 367777777777777654111355666666666663 67777
Q ss_pred HHHHHHHHHHCCCC
Q 037409 558 VVVLLHKMAAEKLV 571 (603)
Q Consensus 558 a~~~~~~~~~~~~~ 571 (603)
+.+.+++.+...+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 77777777765544
No 230
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.56 E-value=0.94 Score=47.35 Aligned_cols=263 Identities=11% Similarity=-0.064 Sum_probs=126.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHhhHHH--HHH
Q 037409 269 FCCVDDWKEAKCLFIEMMDNGVQPDV--VTFNAMINYNCKDGKMDKVNRLLELMIQRGV-------NPDTVTYNS--LMD 337 (603)
Q Consensus 269 ~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~--l~~ 337 (603)
....|+.++++.++...+..+...+. ..-..+.-+....|..+++..++...+...- .+....-.. |..
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 34556666666666554432101122 2222333344555555567776666554321 001111122 222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCcchHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHH--HHHHHhcC
Q 037409 338 GFCLVGRISRARELFVSMVSKGCRHDVYSYN--ILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTL--LSGLFQVG 413 (603)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~ 413 (603)
++.-.++ +++.+.+..++...- ....... .+...+.-.|+.+....++..+.+.. +......+ .-++...|
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 2333344 345555555554321 0011111 22333445677777777777666531 22222223 33344678
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhH--HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTF--ATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKL 491 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 491 (603)
+.+.+..+++.+... ..|....- ..+.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888777777653 12222211 123345667778776666777776532 22333333333344446777777777
Q ss_pred HHHHhhCCCCCCHhHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHH
Q 037409 492 FHRLQHKGPIPDVVTCSTMIHWLCKEGQM-DKANDLLLDMEAKNCVPSEVTF 542 (603)
Q Consensus 492 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~ 542 (603)
++.+.+.+ .|....-..+.-+....|.. .+++..+..+.. .+|..+-
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vr 664 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVR 664 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHH
Confidence 77666542 33333333344444444443 577778888864 3454443
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.54 E-value=0.01 Score=44.77 Aligned_cols=84 Identities=17% Similarity=0.091 Sum_probs=66.9
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCC-CCCCCHHHHHHHHHHHHcCCcHH
Q 037409 517 EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSK---VVVLLHKMAAEK-LVVSDLSLSSKVVDLLSKDKKYR 592 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 592 (603)
......+.+.+.+....| .++..+-..+++++.++.+... ++.+++...+.+ +. ...+....++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~-~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE-EQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH-HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHHHHhhhHH
Confidence 334456666777776666 5889999999999999998766 889999988754 21 25677888899999999999
Q ss_pred HHHHHHHhhc
Q 037409 593 ECLNQFRHLL 602 (603)
Q Consensus 593 eA~~~~~~~l 602 (603)
+|+++++.+|
T Consensus 92 ~A~~~~~~lL 101 (126)
T 1nzn_A 92 KALKYVRGLL 101 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999876
No 232
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.089 Score=55.82 Aligned_cols=193 Identities=16% Similarity=0.115 Sum_probs=120.0
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH
Q 037409 337 DGFCLVGRISRARE-LFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNL 415 (603)
Q Consensus 337 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 415 (603)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.++.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence 44456788998876 442211 02233777888889999999987663211 112345678999
Q ss_pred HHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHH
Q 037409 416 GDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRL 495 (603)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 495 (603)
+.|.++.+.+ .+...|..+.+.+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 9999986544 3678999999999999999999999987642 334555555667766655555544
Q ss_pred hhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--
Q 037409 496 QHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVS-- 573 (603)
Q Consensus 496 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-- 573 (603)
...| -++....++.+.|++++|++++ .+.+++++|..+-++ .++. .
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~----------------------~~~~~~~~A~~lA~~---~~~~-~~~ 781 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLL----------------------IKSQRFSEAAFLGST---YGLG-DNE 781 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHH----------------------HHTTCHHHHHHHHHH---TTCC-HHH
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHH----------------------HHcCChHHHHHHHHH---hCCC-hHH
Confidence 4432 1233334455556666655554 455667777665554 2222 1
Q ss_pred CHHHHHHHHHHHHcCCcHHHH
Q 037409 574 DLSLSSKVVDLLSKDKKYREC 594 (603)
Q Consensus 574 ~~~~~~~l~~~~~~~g~~~eA 594 (603)
-+.+.......+...|+.+.|
T Consensus 782 i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 782 VNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHHHHHHhccchhHH
Confidence 124555555666677765433
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.37 E-value=0.082 Score=42.65 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=78.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChh
Q 037409 442 DGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMD 521 (603)
Q Consensus 442 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 521 (603)
......|+++.|.++.+.+ .+...|..|.......|+++-|++.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3446789999999987765 3788999999999999999999999998863 455566677788888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 522 KANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 522 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
.-..+-+.....| + ++.....+...|+++++.+++.+.
T Consensus 78 ~L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 8777777666655 1 233445577889999999888553
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.30 E-value=0.073 Score=41.15 Aligned_cols=54 Identities=17% Similarity=0.043 Sum_probs=32.5
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 517 EGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.++.++|.++|+.+++.+-.- ...|...+.--.+.|+...|.+++.+.+..++.
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 356666666666665543222 555555555556667777777777776665544
No 235
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.17 Score=40.81 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=95.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCCh
Q 037409 406 LSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRL 485 (603)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 485 (603)
.......|+++.|.++.+++ .+...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence 34456789999999998765 3788999999999999999999999988653 34555667778998
Q ss_pred hHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 486 KTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
+.-.++-+.....| -++....++...|++++++++|.+.-. -|.... .....|..+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 88777766665542 256666778889999999999865432 121111 122357778888887765
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.25 E-value=0.091 Score=40.61 Aligned_cols=102 Identities=13% Similarity=0.094 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCCHH----HHHHH-H--HHHHhcCCcchHHHHHHHHHH
Q 037409 78 SPGMTSFTILLTMLAKNKQY------DTVVSLFKRLNSNGLFPDLF----VLNLL-I--NCLCKMGITSGAFVVLGRILR 144 (603)
Q Consensus 78 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~----~~~~l-~--~~~~~~g~~~~a~~~~~~~~~ 144 (603)
+.|.++|-..+..+-+.|++ ++.+++|+++... +||+.. .|..+ + ..+...++.++|+++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34889999999999988999 8999999998875 355421 11111 1 122334677777777777665
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcC
Q 037409 145 SCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFA 181 (603)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 181 (603)
. .+.-..+|......-.++|+...|.+++.+....+
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 4 22235566666666667777777777777766654
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.08 E-value=0.023 Score=44.91 Aligned_cols=30 Identities=10% Similarity=0.215 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 573 SDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 573 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+.+.-..++.+|.+.|++++|+.+++.++
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 345777889999999999999999999886
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.062 Score=54.90 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=26.2
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037409 514 LCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 514 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 565 (603)
|...|+++-|+++.+++...- |.+-.+|..|+.+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334555555555555555542 334555555555555555555555554443
No 239
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.35 E-value=0.64 Score=35.16 Aligned_cols=57 Identities=14% Similarity=0.071 Sum_probs=22.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 037409 267 CGFCCVDDWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCKDGKMDKVNRLLELMIQRG 324 (603)
Q Consensus 267 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 324 (603)
+.....|.-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3333444444444444443221 13334444444444444444444444444444443
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.05 E-value=0.58 Score=35.90 Aligned_cols=71 Identities=10% Similarity=0.002 Sum_probs=48.8
Q ss_pred CCCHhHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 501 IPDVVTCSTMIHWLCKEGQM---DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 501 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
.|+..+--.+.+++.+..+. .+++.+++.+...+..........|+-++.+.|++++|.++.+.+++..|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 46666767777777776644 467777777776541123455667777788888888888888888876554
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.04 E-value=0.22 Score=37.62 Aligned_cols=73 Identities=12% Similarity=0.066 Sum_probs=52.2
Q ss_pred CCCCCHhHHHHHHHHHHHcCCh---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 037409 499 GPIPDVVTCSTMIHWLCKEGQM---DKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLV 571 (603)
Q Consensus 499 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 571 (603)
+..|+..+--.+++++.+..+. .+++.+++++.+.+..-....+..|+-++.+.|++++|.++.+.+++..|.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4456777777778888877644 467788888777651123556777888888888888888888888875554
No 242
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.96 E-value=0.43 Score=36.62 Aligned_cols=66 Identities=11% Similarity=-0.017 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 536 VPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 536 ~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.|+..+-..+++++.++.+. .+++.+++.+.+.++. ...+....++-++.+.|++++|+++.+.+|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 68888989999999998866 5788899999886654 467788889999999999999999999876
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.75 E-value=4.9 Score=42.18 Aligned_cols=27 Identities=15% Similarity=0.153 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHhh
Q 037409 226 TYNSIIDGLCKDGFVDKAKELLLQMKD 252 (603)
Q Consensus 226 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 252 (603)
-|..++.+..+.++.+.+.++|..+.+
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 466677888888888888888888764
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.65 E-value=0.22 Score=37.70 Aligned_cols=67 Identities=10% Similarity=-0.032 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 535 CVPSEVTFCTLLRGFVQNNKK---SKVVVLLHKMAAEKLVVSDLSLSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 535 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
-.|+..+-..+++++.++.+. .+++.+++.+.+.++. -..+....++-++.+.|++++|+++.+.+|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~-~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-hhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 368889989999999998866 5788999999876653 357888889999999999999999999876
No 245
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.12 E-value=4.3 Score=38.98 Aligned_cols=50 Identities=6% Similarity=0.088 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 308 GKMDKVNRLLELMIQR-----GVNPDTVTYNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 308 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
|+++.|.+.+-.+.+. +..........++..|...++++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5666776666555432 2233445566677777777777776666655443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.91 E-value=0.43 Score=48.83 Aligned_cols=130 Identities=11% Similarity=-0.019 Sum_probs=78.7
Q ss_pred HHHHHHHHHHhcCC-cchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHhHHHHHHHHHHhc------CCCC-cH--
Q 037409 118 VLNLLINCLCKMGI-TSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEG-RIMEAARLFKKLNVF------ACDP-NV-- 186 (603)
Q Consensus 118 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~------~~~~-~~-- 186 (603)
....+++.+...|+ ++.|..+++++.+..+..+......++..+...+ +--+|.+++.+..+. ..++ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34445555555665 4778888888887743322222233333333332 223455555544321 1111 11
Q ss_pred --------HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 187 --------VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 187 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
.....-...+...|+++-|+++.++.... .|.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL----ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc----CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222235566788999999999998886 45667889999999999999999998888875
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.37 E-value=5.5 Score=38.27 Aligned_cols=95 Identities=11% Similarity=0.025 Sum_probs=55.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCH--hh
Q 037409 263 NSLICGFCCVDDWKEAKCLFIEMMDN--GVQPD---VVTFNAMINYNCKDGKMDKVNRLLELMIQ----RGVNPDT--VT 331 (603)
Q Consensus 263 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~--~~ 331 (603)
..|...|...|++.+|.+++..+... |.... ...+...+..|...+++..|..+++++.. ....|+. ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666677777777777777776532 11111 23455566677777777777777776532 1112221 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037409 332 YNSLMDGFCLVGRISRARELFVSMVS 357 (603)
Q Consensus 332 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 357 (603)
+...+..+...+++.+|-+.|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555566667777777666666543
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.13 E-value=0.73 Score=43.49 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=45.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA-----AEKLVVSDLSLSSKV 581 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~~l 581 (603)
...++..+...|++++++..+..+.... +-+...+..++.++.+.|+..+|.+.|+++. +.|+. |.+.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~-P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID-PGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-CCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHH
Confidence 3445555666666666666666666554 4566666666666666666666666666654 23666 565554443
Q ss_pred HHHH
Q 037409 582 VDLL 585 (603)
Q Consensus 582 ~~~~ 585 (603)
-.++
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.24 E-value=7.4 Score=36.36 Aligned_cols=245 Identities=11% Similarity=-0.010 Sum_probs=130.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CcchHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHhhH--
Q 037409 330 VTYNSLMDGFCLVGRISRARELFVSMVSK-GCRH---DVYSYNILINANCKDQ-KVEDAVCLYREMLSERIRPSVITY-- 402 (603)
Q Consensus 330 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~-- 402 (603)
.....+...|.+.|+.++..+++.....- +.-+ .......++..+.... ..+.-.++..+..+.... ...+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45678888999999999988888776432 1011 2234566777776643 334444444444331000 11223
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCC---HHhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCChHH
Q 037409 403 ----NTLLSGLFQVGNLGDALKLIDKMQLN--DVVPD---SFTFATYIDGLCKNGFVLEAVQVFQAIRNC--KCELRIET 471 (603)
Q Consensus 403 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~ 471 (603)
..++..|...|++.+|.+++..+.+. ..... ...+..-++.|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 25677888899999998888887642 11111 233445566777888999998888877642 22233332
Q ss_pred H----HHHHHHHH-hCCChhHHHHHHHHHhhCCCCCCHh----HHHHHHHHHHHcCChhHHHHHHH-HHHHCCCCCCHHH
Q 037409 472 Y----NCLINGLC-KMGRLKTACKLFHRLQHKGPIPDVV----TCSTMIHWLCKEGQMDKANDLLL-DMEAKNCVPSEVT 541 (603)
Q Consensus 472 ~----~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~ 541 (603)
. ..-+..+. ..+++..|...|-+..+.-...... ..-.++-+-.-.++..+...++. +....-..|+...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHH
Confidence 2 22334455 6888888888877664320011111 11112222223344333333332 2211112344444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHH
Q 037409 542 FCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLS 578 (603)
Q Consensus 542 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 578 (603)
+..++.++ ..+++.+...+++.... .+. .|+...
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~-~D~~l~ 292 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELA-EDVIVQ 292 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTT-TSHHHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHh-cChHHH
Confidence 55555554 66777776666665432 233 455443
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.19 E-value=0.92 Score=35.94 Aligned_cols=21 Identities=10% Similarity=0.079 Sum_probs=10.6
Q ss_pred HHHHHHhcCCHhHHHHHHHHH
Q 037409 157 LINGLCAEGRIMEAARLFKKL 177 (603)
Q Consensus 157 l~~~~~~~g~~~~A~~~~~~~ 177 (603)
+...|...+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 444445555555555555544
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.74 E-value=1.2 Score=41.97 Aligned_cols=73 Identities=10% Similarity=0.007 Sum_probs=51.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEA-----KNCVPSEVTFCTL 545 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 545 (603)
...++..+...|+++++...+..+....+- +...|..++.++...|+..+|++.|+++.+ .|+.|++.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 445566677778888888777777776554 677778888888888888888877777653 3777776664433
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.76 E-value=8.6 Score=42.29 Aligned_cols=193 Identities=11% Similarity=0.069 Sum_probs=114.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C--------------
Q 037409 368 NILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN----D-------------- 429 (603)
Q Consensus 368 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-------------- 429 (603)
..++..+.+.+.++.+.++..-. . .+...--.+..++...|++++|...|++.-.. .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-N----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-C----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-c----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555566667766665544322 1 23333344556677788888888888764210 0
Q ss_pred ----CCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhCCChhHHHHHHHHHhhCCCC
Q 037409 430 ----VVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRI----ETYNCLINGLCKMGRLKTACKLFHRLQHKGPI 501 (603)
Q Consensus 430 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 501 (603)
...-..-|..++..+.+.+.++.+.++-+...+...+.+. ..|..+.+.+...|++++|...+-.+.....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~- 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL- 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence 0011233667777888889999998888777654322222 3678889999999999999999988876433
Q ss_pred CCHhHHHHHHHHHHHcCChhH------------HHHHHHH-HHHC-CCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDK------------ANDLLLD-MEAK-NCVPSEVTFCTLLRGFVQNNKKSKV-VVLLHKMA 566 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~------------A~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 566 (603)
-...+..++..++..|..+. ..+++.. +... .+...+.-|..|-.-+...|++..| .-+|+.+.
T Consensus 970 -r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 970 -KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 35567777777776655544 3444432 2111 1111223455555556667777554 44555554
Q ss_pred H
Q 037409 567 A 567 (603)
Q Consensus 567 ~ 567 (603)
+
T Consensus 1049 R 1049 (1139)
T 4fhn_B 1049 R 1049 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.60 E-value=5.7 Score=43.70 Aligned_cols=190 Identities=13% Similarity=0.068 Sum_probs=94.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCC--------------------
Q 037409 87 LLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSC-------------------- 146 (603)
Q Consensus 87 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------------------- 146 (603)
++..+...+.++.+..+.... +.++.....++.++...|++++|.+.|++....-
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 444555555555554433222 2233333445556666666666666665432110
Q ss_pred --CCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCcc
Q 037409 147 --FTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNV----VTFNTLINGLCRTRNTLVALKLFEEMVNEFGAIC 220 (603)
Q Consensus 147 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 220 (603)
...-..-|..++..+-+.|.++.+.+.-....+...+.+. ..|..+...+...|++++|...+-.+....
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~---- 968 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP---- 968 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS----
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH----
Confidence 0001123556666676777777776666554443211111 146666777777777777776666655432
Q ss_pred CCChhhHHHHHHHHHh------------cCChhHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 037409 221 KPDVVTYNSIIDGLCK------------DGFVDKAKELLLQMKDRN--INPNVITYNSLICGFCCVDDWKEAKC-LFIEM 285 (603)
Q Consensus 221 ~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~ 285 (603)
.-......++..++. .|..++..+++....+.. ....+.-|..|=..+...|++.+|-. +|+.+
T Consensus 969 -~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~ 1047 (1139)
T 4fhn_B 969 -LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKL 1047 (1139)
T ss_dssp -SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHH
Confidence 222333333333222 466677777665433211 11122334555555666777765544 44444
Q ss_pred H
Q 037409 286 M 286 (603)
Q Consensus 286 ~ 286 (603)
.
T Consensus 1048 ~ 1048 (1139)
T 4fhn_B 1048 S 1048 (1139)
T ss_dssp H
T ss_pred H
Confidence 3
No 254
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.14 E-value=10 Score=34.05 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=19.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037409 328 DTVTYNSLMDGFCLVGRISRARELFV 353 (603)
Q Consensus 328 ~~~~~~~l~~~~~~~~~~~~a~~~~~ 353 (603)
++.....+...|.+.+++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 56667777777888888888777664
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.98 E-value=15 Score=33.04 Aligned_cols=81 Identities=7% Similarity=-0.097 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHc---CChhHHHHHHHHHHHCCCCCCHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKE---GQMDKANDLLLDMEAKNCVPSEVTFC 543 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 543 (603)
-++.....+...|.+.|++.+|+..|-.-. .-+...+..++.-+... |...++--++-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------- 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------- 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH---------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCcchHHHHHH---------------
Confidence 377888888999999999988888765211 11344555555544443 33333222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037409 544 TLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 544 ~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
..+--|.-.|+...|..+++...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 12223556788888888877665
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.81 E-value=5.8 Score=28.21 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 414 NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
+.-+..+-++.+...+..|++......+.+|.+.+++..|.++++.++..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 344555666666666677777777777777777777777777777665421 222344554443
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.59 E-value=32 Score=34.55 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHhhHHH----HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHH
Q 037409 378 QKVEDAVCLYREMLSERIRPSVITYNT----LLSGLFQVGNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEA 453 (603)
Q Consensus 378 ~~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 453 (603)
.+.+.|...+........ .+...... +.......+...++...+....... .+.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 477899999988765322 23332222 2222333443556666666654432 2333334444445577999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 454 VQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
...|+.+.... .....-.-.+.+++...|+.++|..+|..+.+
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988775422 22455566778888889999999999998875
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.73 E-value=4.8 Score=34.89 Aligned_cols=116 Identities=19% Similarity=0.264 Sum_probs=76.9
Q ss_pred HHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037409 477 NGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKS 556 (603)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 556 (603)
....+.|++++|+.....-++..|. |...-..++..+|-.|+|+.|.+-++...+.. |+...-..+.+...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHH------
Confidence 3456789999999999999998777 88888899999999999999999999998864 55333222211111
Q ss_pred HHHHHHHHHHHCCCC----CCCHHHHHHHHHHHH--cCCcHHHHHHHHHhh
Q 037409 557 KVVVLLHKMAAEKLV----VSDLSLSSKVVDLLS--KDKKYRECLNQFRHL 601 (603)
Q Consensus 557 ~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~--~~g~~~eA~~~~~~~ 601 (603)
.|...-++...-+-. .........++.++. ..|+.++|.+.-++.
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A 126 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 126 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 222222333322111 023445556666655 469999998876654
No 259
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.99 E-value=37 Score=34.04 Aligned_cols=403 Identities=9% Similarity=-0.002 Sum_probs=189.3
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
.|..+.-....|+.+.+..+-..+ ..+|-..-..|..+...+ ......+...++.+.. +.+.....-..-+..+.+
T Consensus 9 ~~~~a~~a~~~~~~~~~~~l~~~l-~~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~ 84 (618)
T 1qsa_A 9 RYAQIKQAWDNRQMDVVEQMMPGL-KDYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELAR 84 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHSGGG-TTSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhh-cCCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHh
Confidence 355555555678887777776554 222221111232222111 1224454444444432 112222333445566667
Q ss_pred cCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHH--HH
Q 037409 129 MGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLV--AL 206 (603)
Q Consensus 129 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~ 206 (603)
.+++......+.. .+.+...-.....+....|+..+|......+-..| ......+..++..+.+.|.... ..
T Consensus 85 ~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~ 158 (618)
T 1qsa_A 85 REDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYL 158 (618)
T ss_dssp TTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHH
T ss_pred CCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHH
Confidence 7776655543322 23456666667777778888888877777765554 4455677777888777665533 33
Q ss_pred HHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHH--------------HHHHHHHhc
Q 037409 207 KLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYN--------------SLICGFCCV 272 (603)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~~~ 272 (603)
.-++.+...+ +...-..++..+ . .......+.+..+... +++..... ..+.-+.+
T Consensus 159 ~R~~~al~~~------~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 159 ERIRLAMKAG------NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHCC------CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHHHHHHHHHHHHh-
Confidence 3334444332 222222222211 0 1111111222222221 11221110 01122222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037409 273 DDWKEAKCLFIEMMDNGVQPDVVTFNAMIN----YNCKDGKMDKVNRLLELMIQRGVNPDTVTYNSLMDGFCLVGRISRA 348 (603)
Q Consensus 273 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 348 (603)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777775433 223332222222 2223342445555555544432 2333333344444566888888
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 037409 349 RELFVSMVSKGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERIRPSVITYNTLLSGLFQVGNLGDALKLIDKMQLN 428 (603)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (603)
...|..+..... ......--+..++...|+.++|..+|..+... . .-|..+. ..+.|..... ...
T Consensus 305 ~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~-~fYg~lA--a~~Lg~~~~~-------~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R-GFYPMVA--AQRIGEEYEL-------KID 369 (618)
T ss_dssp HHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C-SHHHHHH--HHHTTCCCCC-------CCC
T ss_pred HHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C-ChHHHHH--HHHcCCCCCC-------CCC
Confidence 888877654311 12222334455667778888888888877642 1 1232221 1222221000 000
Q ss_pred CCCC---CH---HhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHH
Q 037409 429 DVVP---DS---FTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFH 493 (603)
Q Consensus 429 ~~~~---~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 493 (603)
.+.+ .. ......+..+...|....|...+..+.+. .+......+.......|..+.+.....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0000 00 01112344566778888888877777653 233333445555556666666655443
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.82 E-value=25 Score=31.84 Aligned_cols=81 Identities=10% Similarity=-0.045 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037409 467 LRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLL 546 (603)
Q Consensus 467 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 546 (603)
-++.....+...|.+.+++.+|+..|- . +-.+....+..++.-+...+...++--++ ...+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfi---------------aRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYC---------------ARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHH---------------HHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHH---------------HHHH
Confidence 467788888899999999999888772 2 23333456655555544443322211111 2223
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037409 547 RGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~~ 566 (603)
--|.-.++...|...++...
T Consensus 195 L~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 34566777877777666555
No 261
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.62 E-value=8.2 Score=31.75 Aligned_cols=59 Identities=10% Similarity=-0.013 Sum_probs=46.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH
Q 037409 517 EGQMDKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS 576 (603)
Q Consensus 517 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (603)
.+...++..+|..|...|+-.. ...|...+..+...|++++|.++|+.-++.+-. |-..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~-P~~r 151 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR-PYNR 151 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-SHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cHHH
Confidence 4557789999999988875544 556788888889999999999999999988776 5443
No 262
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.52 E-value=11 Score=26.72 Aligned_cols=77 Identities=12% Similarity=0.063 Sum_probs=42.4
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLN-LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
..++|..+-+.+...+ +..+.. .-+..+...|+|++|..+.+.. +.||...|.+|... +.|-.+++...+
T Consensus 22 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---EEEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH--hcccHHHHHHHH
Confidence 4666666666665543 222222 1234556667777766655443 25666666655443 566666666666
Q ss_pred HHHHhcC
Q 037409 175 KKLNVFA 181 (603)
Q Consensus 175 ~~~~~~~ 181 (603)
.++...|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665544
No 263
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=81.49 E-value=15 Score=27.76 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Q 037409 415 LGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLIN 477 (603)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 477 (603)
.-+..+-++.+...+..|++......+.+|.+.+++..|.++++-++..- .+...+|..++.
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 33455566666667777888888888888888888888888887776422 233445555544
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.34 E-value=26 Score=30.40 Aligned_cols=116 Identities=13% Similarity=0.050 Sum_probs=70.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCC--CCHhhHHHHHHHHHhcCC
Q 037409 89 TMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFT--PNTVTFNFLINGLCAEGR 166 (603)
Q Consensus 89 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 166 (603)
..+.+.|++++|+......++.. |.|...-..+++.+|-.|++++|.+-++...+..+. +....|..+|++-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567888888888888887776 677777778888888888888888888877776332 1122333343321
Q ss_pred HhHHHHHHHHHHhcCCCC----cHHHH-HHHHHHH--HhcCChHHHHHHHHHHHHh
Q 037409 167 IMEAARLFKKLNVFACDP----NVVTF-NTLINGL--CRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~----~~~~~-~~l~~~~--~~~g~~~~A~~~~~~~~~~ 215 (603)
..=.++..-+-.| ....| ..++.+. ...|+.++|.++-.++.+.
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 1111111111111 11223 3344433 3468999998888888765
No 265
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.28 E-value=31 Score=31.20 Aligned_cols=26 Identities=12% Similarity=0.054 Sum_probs=19.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037409 327 PDTVTYNSLMDGFCLVGRISRARELF 352 (603)
Q Consensus 327 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 352 (603)
-|+.....+...|.+.+++.+|+..|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 35666777778888888888887766
No 266
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=80.81 E-value=10 Score=26.75 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 96 QYDTVVSLFKRLNSNGLFPDLFVLN-LLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 96 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
..++|..+-+.+...+ +..+.. .-+..+...|+|++|..+.+.. +.||...|.+|.. .+.|-.+++...+
T Consensus 21 ~HqEA~tIAdwL~~~~---~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---QDEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---cHHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHH
Confidence 4566666666555543 222221 1233455666666666554432 2456666655543 2566666666666
Q ss_pred HHHHhcC
Q 037409 175 KKLNVFA 181 (603)
Q Consensus 175 ~~~~~~~ 181 (603)
.++...|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 5655544
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.76 E-value=13 Score=26.48 Aligned_cols=62 Identities=15% Similarity=0.207 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHH
Q 037409 167 IMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIID 232 (603)
Q Consensus 167 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (603)
.=+..+-++.+....+-|++....+.++++.+.+++..|+++|+.+.... .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~----~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA----GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh----cCchhhHHHHHH
Confidence 33555666666666667777777777777777777777777777776652 233344554443
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.24 E-value=24 Score=33.58 Aligned_cols=63 Identities=11% Similarity=-0.050 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCCHhHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 153 TFNFLINGLCAEGRIMEAARLFKKLNVF--ACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 153 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
+...+...|.+.|++++|.+.|.++... +...-...+-..++.+...+++..+...+.++...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5666777888888888888888887653 22223445666777777778888887777777654
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.04 E-value=18 Score=34.41 Aligned_cols=99 Identities=9% Similarity=-0.121 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCHHhH--
Q 037409 365 YSYNILINANCKDQKVEDAVCLYREMLSER--IRPSVITYNTLLSGLFQVGNLGDALKLIDKMQL---NDVVPDSFTF-- 437 (603)
Q Consensus 365 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~-- 437 (603)
.+...+...|.+.|+++.|.+.|.++...- ...-...+-..++.+...+++..+...++++.. .+..|+...-
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356667777888888888888887776542 222345566677777888888888888877642 2323332211
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAIRNC 463 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 463 (603)
..-+..+...+++..|...|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 11122234568888888888776543
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.61 E-value=19 Score=25.51 Aligned_cols=77 Identities=13% Similarity=0.023 Sum_probs=33.9
Q ss_pred CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHH
Q 037409 166 RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKE 245 (603)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 245 (603)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.. ..||...|..+.. .+.|..+++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------c~pdlepw~ALce--~rlGl~s~le~ 89 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN-------PWPALEPWFALCE--WHLGLGAALDR 89 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC-------CCGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------CCchHHHHHHHHH--HhcccHHHHHH
Confidence 44555555555544321 1111112223444555555555443332 3455555544433 24555555555
Q ss_pred HHHHHhhC
Q 037409 246 LLLQMKDR 253 (603)
Q Consensus 246 ~~~~~~~~ 253 (603)
.+.++...
T Consensus 90 rL~~la~s 97 (115)
T 2uwj_G 90 RLAGLGGS 97 (115)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 55444443
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=75.43 E-value=18 Score=28.28 Aligned_cols=55 Identities=2% Similarity=-0.061 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH
Q 037409 521 DKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS 576 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (603)
+++..+|..|...|+-.. +..|...+..+...|++++|.++++.-++.+-. |-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~-P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE-PREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-SHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cHHH
Confidence 448889999988876554 556778888888999999999999999988776 5443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.33 E-value=24 Score=26.69 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHH
Q 037409 169 EAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIID 232 (603)
Q Consensus 169 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 232 (603)
+..+-++.+....+-|++......+.++-+.+++..|+++|+.+.... .+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~----~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA----GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc----CCchhhHHHHHH
Confidence 455556666666667777777777788888888888888887777652 333444555443
No 273
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.11 E-value=19 Score=25.47 Aligned_cols=77 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred CHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHH
Q 037409 166 RIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKE 245 (603)
Q Consensus 166 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 245 (603)
..++|..+-+.+...+. ...+-..-+..+...|++++|..+.+.. ..||...|..+.. .+.|..+++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-------c~pdlepw~ALce--~rlGl~s~le~ 90 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL-------AYPDLEPWLALCE--YRLGLGSALES 90 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS-------CCGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC-------CCchHHHHHHHHH--HhcccHHHHHH
Confidence 45555555555554321 1111122233445566666665554433 3455555554443 24455555555
Q ss_pred HHHHHhhC
Q 037409 246 LLLQMKDR 253 (603)
Q Consensus 246 ~~~~~~~~ 253 (603)
.+.++...
T Consensus 91 rL~~la~s 98 (116)
T 2p58_C 91 RLNRLARS 98 (116)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 55455444
No 274
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=72.17 E-value=50 Score=31.32 Aligned_cols=112 Identities=13% Similarity=-0.019 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 037409 447 NGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDL 526 (603)
Q Consensus 447 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 526 (603)
..+.+-|.++ +.+.|++--...|..-.+.+...|++++|.++.-...+.-.+ +..|.+.+-.+=...|+..--+.+
T Consensus 342 l~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLR-t~~Ti~rFk~vp~~pgq~splL~Y 417 (494)
T 1bpo_A 342 LQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILR-TPDTIRRFQSVPAQPGQTSPLLQY 417 (494)
T ss_dssp TCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSC-SHHHHHHHTTSCCCTTSCCHHHHH
T ss_pred cCCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcccccc-CHHHHHHHhcCCCCCCCCCHHHHH
Confidence 3555555555 444555555556666666677777777777766555442222 555554443333334555556666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037409 527 LLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLH 563 (603)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 563 (603)
|..+++.| ..+..--.-+++.-...|+.+-..++++
T Consensus 418 F~~Ll~~g-~Ln~~ESlEl~r~vL~q~r~~llekWl~ 453 (494)
T 1bpo_A 418 FGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKWLK 453 (494)
T ss_dssp HHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhccC-ccchHHhhHHhHHHHhccHHHHHHHHHh
Confidence 66666665 4444333344555555666555544443
No 275
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.49 E-value=44 Score=27.52 Aligned_cols=58 Identities=17% Similarity=0.111 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 482 MGRLKTACKLFHRLQHKGPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 482 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
+++..++..+|..|...|+.- -...|...+..+...|++.+|.++|+.-++.+-.|-.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 455789999999999876543 4667888888999999999999999999998767743
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=67.96 E-value=31 Score=27.36 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=52.2
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHHHHHH
Q 037409 502 PDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLSLSSK 580 (603)
Q Consensus 502 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 580 (603)
-|.......+..--.. ++...+|..|...|+-.. +..|...+..+...|++.+|.++|+..++.+-. |....-..
T Consensus 61 nD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~-P~~~L~~~ 136 (164)
T 2wvi_A 61 SDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE-PLERLQSQ 136 (164)
T ss_dssp TCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-SHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 3554444444322223 447788999998876554 556778888899999999999999999988877 55544333
No 277
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.79 E-value=50 Score=32.00 Aligned_cols=65 Identities=12% Similarity=0.025 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCcchHHHHHHHHHHC
Q 037409 81 MTSFTILLTMLAKNKQYDTVVSLFKRLNSNG-LFPDLF---VLNLLINCLCKMGITSGAFVVLGRILRS 145 (603)
Q Consensus 81 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 145 (603)
...+|.+++.|...+.+++|..+.....--. ..++.. -+..+++.+.-.++|.+|.+.+..+.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4556677777777777777777666653100 001111 1222455566666666666666666554
No 278
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=60.01 E-value=1.1e+02 Score=28.49 Aligned_cols=93 Identities=13% Similarity=-0.045 Sum_probs=44.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHhHH---
Q 037409 369 ILINANCKDQKVEDAVCLYREMLSERIRPS-----VITYNTLLSGLFQVGNLGDALKLIDKMQLN--DVVPDSFTFA--- 438 (603)
Q Consensus 369 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~--- 438 (603)
.++..|...|++.+|.+++.++...-...| ...+..-++.|...+++.++...+...... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 355566666666666666665554211111 122344445566666666666666655321 1212222211
Q ss_pred -HHHHHHH-hCCCHHHHHHHHHHHH
Q 037409 439 -TYIDGLC-KNGFVLEAVQVFQAIR 461 (603)
Q Consensus 439 -~l~~~~~-~~g~~~~a~~~~~~~~ 461 (603)
.-...+. ..+++..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1112234 5666666666655443
No 279
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=58.97 E-value=29 Score=27.36 Aligned_cols=61 Identities=10% Similarity=-0.071 Sum_probs=43.6
Q ss_pred HhhhhhhhccCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH------HHHhcCChhHHHHHHHHHHh
Q 037409 49 KFLNDRHKSGNITSNEAVYFFDCMIKMKPSP--GMTSFTILLT------MLAKNKQYDTVVSLFKRLNS 109 (603)
Q Consensus 49 ~~l~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 109 (603)
.|..+......|++-+|-++++......+.+ ....|..+|+ ...+.|+...|..++.++..
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555555566788889999998888776655 4455666666 23567888888888888765
No 280
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.21 E-value=1.3e+02 Score=29.29 Aligned_cols=65 Identities=11% Similarity=0.105 Sum_probs=48.0
Q ss_pred HhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCC-CCcH--HHH-HHHHHHHHhcCChHHHHHHHHHHHHh
Q 037409 151 TVTFNFLINGLCAEGRIMEAARLFKKLNVFAC-DPNV--VTF-NTLINGLCRTRNTLVALKLFEEMVNE 215 (603)
Q Consensus 151 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 215 (603)
..++|.+++.|...+.++.|..+..+..--.. .++. ..| ..++..+.-.+++.+|.+.+..+...
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56789999999999999999999998752100 0111 222 34567788899999999999998875
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.66 E-value=23 Score=29.75 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH
Q 037409 521 DKANDLLLDMEAKNCVPS-EVTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS 576 (603)
Q Consensus 521 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 576 (603)
+++..+|..|...|+-.. ...|...+..+...|++.+|..+|+.-++.+-. |-..
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~-P~~r 186 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK-PFLR 186 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB-SHHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-cHHH
Confidence 577889999998876554 556778888889999999999999999988776 5433
No 282
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=52.08 E-value=97 Score=25.38 Aligned_cols=52 Identities=8% Similarity=0.110 Sum_probs=31.6
Q ss_pred CchhHHHhhhhhhhc-cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037409 43 DGTSIAKFLNDRHKS-GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNK 95 (603)
Q Consensus 43 ~~~~~~~~l~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 95 (603)
.+...+..+++-+++ .-.|++.|+-++-+|++.+ .|.......++-+.-.-|
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 344556667777777 4558888888888888887 544433344444443334
No 283
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=51.21 E-value=66 Score=27.39 Aligned_cols=90 Identities=8% Similarity=0.010 Sum_probs=48.5
Q ss_pred HHHHHHHhCCChhHHHHHHHHHhhC--CCCC----CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037409 474 CLINGLCKMGRLKTACKLFHRLQHK--GPIP----DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLR 547 (603)
Q Consensus 474 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 547 (603)
.-++.+....++++|..++++..+. +.++ ........+..-.....-.-+..+.+++ .. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 3466777788888888888766542 1221 1111122222222222223333344444 22 345555666667
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037409 548 GFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~ 566 (603)
.+.+.|+-++|.++|=+..
T Consensus 100 ~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHH
Confidence 7777888888877776655
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=50.95 E-value=1.5e+02 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=17.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
...++.-|...++.++|...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 3556777777777777777777764
No 285
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=47.41 E-value=1.1e+02 Score=24.99 Aligned_cols=48 Identities=17% Similarity=0.312 Sum_probs=29.6
Q ss_pred chhHHHhhhhhhhc-cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037409 44 GTSIAKFLNDRHKS-GNITSNEAVYFFDCMIKMKPSPGMTSFTILLTML 91 (603)
Q Consensus 44 ~~~~~~~l~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (603)
+...+..+++-+++ .-.|++.|+-++-+|++.+-.|.......++-+.
T Consensus 4 Gd~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 4 GDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34445566676777 4457888888888888877554433333333333
No 286
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=47.35 E-value=70 Score=25.00 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 037409 547 RGFVQNNKKSKVVVLLHKM 565 (603)
Q Consensus 547 ~~~~~~g~~~~a~~~~~~~ 565 (603)
|.|.-.|++++|+.+-+.+
T Consensus 81 WIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 81 WIYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHhc
Confidence 3444455555555554443
No 287
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=46.18 E-value=1e+02 Score=23.98 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=43.6
Q ss_pred hHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 037409 486 KTACKLFHRLQHKGPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV 540 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 540 (603)
+++..+|..|...|+-- -...|......+...|++++|.++|+.-++.+-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 45889999998876553 35567888888899999999999999999887677443
No 288
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=45.90 E-value=1.2e+02 Score=24.77 Aligned_cols=17 Identities=12% Similarity=-0.138 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHhcCC
Q 037409 80 GMTSFTILLTMLAKNKQ 96 (603)
Q Consensus 80 ~~~~~~~l~~~~~~~g~ 96 (603)
+.......+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33444444444444444
No 289
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.60 E-value=1.8e+02 Score=26.63 Aligned_cols=73 Identities=12% Similarity=0.104 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCC--hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQ--MDKANDLLLDMEAKNCVPSEVTFCTL 545 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l 545 (603)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+....++..+...|+-+.......+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf 294 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGY 294 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 456677777778888888888777531111 12233344444443332 24466677777766654444433333
No 290
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=44.48 E-value=1.3e+02 Score=24.80 Aligned_cols=39 Identities=15% Similarity=0.339 Sum_probs=22.8
Q ss_pred CchhHHHhhhhhhhc-cCCCHHHHHHHHHHHHhCCCCCCH
Q 037409 43 DGTSIAKFLNDRHKS-GNITSNEAVYFFDCMIKMKPSPGM 81 (603)
Q Consensus 43 ~~~~~~~~l~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~ 81 (603)
.+...+..+++-+++ .-.+++.|+-++-+|++.+-.|..
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~ 70 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNF 70 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Confidence 344555566666666 344677777777777776654433
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=44.07 E-value=56 Score=25.83 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCc
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSN--GLFPDLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 132 (603)
...++..+...+.+-.|.++++.+.+. +...+..|...-+..+...|-.
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555555555566666666666554 4344555555555555555533
No 292
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=43.59 E-value=1.8e+02 Score=27.62 Aligned_cols=83 Identities=16% Similarity=0.037 Sum_probs=37.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHH
Q 037409 95 KQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLF 174 (603)
Q Consensus 95 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 174 (603)
.+.+-|.++ +.+.|.+--...|..-...+...|+|++|..+-....+. .-.+..+.+.+-.+=...|+..-.+..|
T Consensus 343 ~n~~lA~~l---A~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g-iLRt~~Ti~rFk~vp~~pgq~splL~YF 418 (494)
T 1bpo_A 343 QNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQYF 418 (494)
T ss_dssp CCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCHHHHHHH---HHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc-cccCHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 444444433 333344444444555555666666666666655444332 2223444333332222234444444445
Q ss_pred HHHHhcC
Q 037409 175 KKLNVFA 181 (603)
Q Consensus 175 ~~~~~~~ 181 (603)
..+.+.|
T Consensus 419 ~~Ll~~g 425 (494)
T 1bpo_A 419 GILLDQG 425 (494)
T ss_dssp HHHHHHS
T ss_pred HHHhccC
Confidence 5544443
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=43.11 E-value=1.2e+02 Score=23.88 Aligned_cols=53 Identities=9% Similarity=-0.048 Sum_probs=39.2
Q ss_pred HhCCChhHHHHHHHHHhhCCCCC--CHhHHHHHHH-H-----HHHcCChhHHHHHHHHHHH
Q 037409 480 CKMGRLKTACKLFHRLQHKGPIP--DVVTCSTMIH-W-----LCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 480 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 532 (603)
...|++-+|-++|+..-.....+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34588888988888887765555 4556777776 2 3467899999999988875
No 294
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=40.74 E-value=1.3e+02 Score=23.72 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH
Q 037409 486 KTACKLFHRLQHKGPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVT 541 (603)
Q Consensus 486 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 541 (603)
+.+..+|..|...|+-- -...|...+..+...|++.+|.++|+.-++.+-.|-...
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L 133 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERL 133 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 45778899999876653 356678888889999999999999999999887776444
No 295
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=40.05 E-value=1.7e+02 Score=24.60 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHhhCCCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037409 485 LKTACKLFHRLQHKGPIP-DVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSE 539 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 539 (603)
.+.+..+|..|...|+.- -...|......+...|++.+|.++|+.-++.+-.|-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 367888999999876553 3566888888899999999999999999988766743
No 296
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.62 E-value=1.8e+02 Score=24.76 Aligned_cols=21 Identities=19% Similarity=0.050 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 037409 336 MDGFCLVGRISRARELFVSMV 356 (603)
Q Consensus 336 ~~~~~~~~~~~~a~~~~~~~~ 356 (603)
++.+....++++|.+++++..
T Consensus 25 LDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 334445555555555555443
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=38.85 E-value=3.2e+02 Score=27.59 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=11.6
Q ss_pred HcCCcHHHHHHHHHhh
Q 037409 586 SKDKKYRECLNQFRHL 601 (603)
Q Consensus 586 ~~~g~~~eA~~~~~~~ 601 (603)
...|++++|++.++++
T Consensus 549 ~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 549 YFNKQWQETLSQMELL 564 (661)
T ss_dssp HHTTCHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHhC
Confidence 5677777777777765
No 298
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=38.74 E-value=1.6e+02 Score=25.25 Aligned_cols=10 Identities=10% Similarity=0.046 Sum_probs=4.1
Q ss_pred hCCChhHHHH
Q 037409 481 KMGRLKTACK 490 (603)
Q Consensus 481 ~~g~~~~A~~ 490 (603)
+.|+.+-+..
T Consensus 228 ~~~~~~~v~~ 237 (285)
T 1wdy_A 228 EKKHLGLVQR 237 (285)
T ss_dssp HTTCHHHHHH
T ss_pred HcCCHHHHHH
Confidence 3444443333
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.53 E-value=1.2e+02 Score=22.69 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Q 037409 438 ATYIDGLCKNGFVLEAVQVFQAI 460 (603)
Q Consensus 438 ~~l~~~~~~~g~~~~a~~~~~~~ 460 (603)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34445555555555555555544
No 300
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=37.63 E-value=41 Score=23.32 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=12.3
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHh
Q 037409 578 SSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 578 ~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
+...++.+.+.|+|+||++..++
T Consensus 18 ~~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHH
Confidence 34445555566666666554443
No 301
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.51 E-value=1.6e+02 Score=23.45 Aligned_cols=53 Identities=15% Similarity=0.149 Sum_probs=34.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC---------------CCCCH-HHHHHHHHHHHcCCcHHHHHHHHHh
Q 037409 548 GFVQNNKKSKVVVLLHKMAAEKL---------------VVSDL-SLSSKVVDLLSKDKKYRECLNQFRH 600 (603)
Q Consensus 548 ~~~~~g~~~~a~~~~~~~~~~~~---------------~~~~~-~~~~~l~~~~~~~g~~~eA~~~~~~ 600 (603)
+|-+..++..|+..++.++.-.+ .|.|. ..+..++..+.+.|+.+||+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
Confidence 45566666666666666663222 11233 3567788888899999999988764
No 302
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.75 E-value=1.5e+02 Score=31.72 Aligned_cols=48 Identities=8% Similarity=0.086 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCHH----HHHHHHHHHHcC
Q 037409 540 VTFCTLLRGFVQNNKKSKVVVLLHKMAAEKLVVSDLS----LSSKVVDLLSKD 588 (603)
Q Consensus 540 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 588 (603)
.-|.+++..+.+.+.++-+..+.+.+++.-.. .+.. .+..+.++.+..
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~-dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCS-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHhhC
Confidence 35778888888999999999999988864322 3433 444444444433
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=35.59 E-value=1.1e+02 Score=23.86 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIR 461 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~ 461 (603)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666777777777777776663
No 304
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=34.97 E-value=2.6e+02 Score=29.86 Aligned_cols=48 Identities=15% Similarity=0.006 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 037409 506 TCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEV----TFCTLLRGFVQNN 553 (603)
Q Consensus 506 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 553 (603)
-|..++..+.+.+-++-++++.+.+++.--+.|.. .|..+.++.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 57788888889999999999999998753223332 4555555554443
No 305
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=34.75 E-value=1.8e+02 Score=23.36 Aligned_cols=28 Identities=0% Similarity=-0.039 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 037409 452 EAVQVFQAIRNCKCELRIETYNCLINGL 479 (603)
Q Consensus 452 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 479 (603)
....++..+.+.|.-.|..--..++...
T Consensus 51 ~ie~vl~~L~~~g~ldD~rfA~~~vr~~ 78 (177)
T 3e3v_A 51 YISEIINKLIDLDLINDKNYAESYVRTM 78 (177)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3344444444444433333333333333
No 306
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=34.31 E-value=24 Score=22.18 Aligned_cols=29 Identities=28% Similarity=0.226 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037409 63 NEAVYFFDCMIKMKPSPGMTSFTILLTML 91 (603)
Q Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 91 (603)
++|...|.++|....-++..+|...++..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 46666677776665444556666666666
No 307
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.18 E-value=1.5e+02 Score=22.79 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=27.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
...++..+...+..-.|.++++.+.+.+...+..|....+..+...|-
T Consensus 24 R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 24 RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 445555555555566666666666655544455555555555655554
No 308
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=34.09 E-value=1.4e+02 Score=22.92 Aligned_cols=47 Identities=9% Similarity=0.096 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGI 131 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 131 (603)
...++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 21 R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 21 RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 344555555555 66666777766665544555555555555555553
No 309
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.98 E-value=1.4e+02 Score=24.76 Aligned_cols=6 Identities=0% Similarity=-0.263 Sum_probs=2.2
Q ss_pred CCChhH
Q 037409 482 MGRLKT 487 (603)
Q Consensus 482 ~g~~~~ 487 (603)
.|+.+-
T Consensus 220 ~~~~~~ 225 (240)
T 3eu9_A 220 RKNVWM 225 (240)
T ss_dssp TTCHHH
T ss_pred cCcHHH
Confidence 333333
No 310
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=33.56 E-value=1.9e+02 Score=23.33 Aligned_cols=142 Identities=15% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHH
Q 037409 79 PGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLI 158 (603)
Q Consensus 79 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 158 (603)
++.......+..+.+.|..+ +...+.+++. .++...-...+.++...|+.+ +...+..+.. .++..+-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChh-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 45555666666666666533 3333444443 345566556666666666543 3333333333 24556666666
Q ss_pred HHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcC
Q 037409 159 NGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDG 238 (603)
Q Consensus 159 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 238 (603)
.++.+.++.+. ...+.++.. .++..+-...+.++.+.++. ++...+..+.. .++...-...+.++...|
T Consensus 98 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~------d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 98 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK------DEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT------CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcHHH-HHHHHHHHc---CCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc------CCCHHHHHHHHHHHHHhC
Confidence 66666665433 333333332 44555555555555555543 33333433332 234444444555555554
Q ss_pred C
Q 037409 239 F 239 (603)
Q Consensus 239 ~ 239 (603)
.
T Consensus 167 ~ 167 (201)
T 3ltj_A 167 G 167 (201)
T ss_dssp S
T ss_pred c
Confidence 4
No 311
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.17 E-value=73 Score=19.43 Aligned_cols=36 Identities=8% Similarity=0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHcCCc--HHHHHHHHHhh
Q 037409 560 VLLHKMAAEKLVVSDLSLSSKVVDLLSKDKK--YRECLNQFRHL 601 (603)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~eA~~~~~~~ 601 (603)
+.++.+++.|+. ++ ....++.+.|+ ++.|.+++.+|
T Consensus 11 qmlq~L~eMGFd-~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 11 QMLQELVNAGCD-QE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHCC-HH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-HH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 345555565654 21 23445666666 88888888876
No 312
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=31.26 E-value=3.1e+02 Score=26.57 Aligned_cols=78 Identities=14% Similarity=0.010 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHH
Q 037409 437 FATYIDGLCKNGFVLEAVQVFQAIRNCKCELRIETYNCLINGLCKMGRLKTACKLFHRLQHKGPIPDVVTCSTMIHWLCK 516 (603)
Q Consensus 437 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 516 (603)
+..+.+.......++.|...|..+.... |.+...||.|+-.....|+.-+|.-.|-+.... ..|-..+...+...+.+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHHH
Confidence 3344555555677899999999998866 778889999999888888888888777776654 34677778887776654
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.79 E-value=2.2e+02 Score=23.67 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHH--H-----HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037409 62 SNEAVYFFDCMIKMKPSPGMT--S-----FTILLTMLAKNKQYDTVVSLFKRLNSN 110 (603)
Q Consensus 62 ~~~A~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~ 110 (603)
++.|+.+++.+-...+-++.. . -...+.+|.++|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 456777777765554322211 0 113344677788888888888877654
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=30.37 E-value=2.2e+02 Score=23.14 Aligned_cols=170 Identities=14% Similarity=0.046 Sum_probs=87.2
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 114 PDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
++...-...+..+...|+. .+...+..+.. .++..+-...+.++.+.++.+ +...+.++.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALK---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555555666666653 33333333333 235555556666666666543 3333333332 45666666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (603)
.++.+.++.+ +...+.++.. .++...-...+.++...|..+ +...+..+.. .++..+-...+.++.+.+
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIG 171 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcHH-HHHHHHHHHh------CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 6666666643 3344444442 245555556666666666543 3444444433 235555566666666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 274 DWKEAKCLFIEMMDNGVQPDVVTFNAMINYNCK 306 (603)
Q Consensus 274 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (603)
+ .++...+..+.+. ++..+-...+.++.+
T Consensus 172 ~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 172 G-ERVRAAMEKLAET---GTGFARKVAVNYLET 200 (211)
T ss_dssp S-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC
T ss_pred c-hhHHHHHHHHHhC---CCHHHHHHHHHHHHh
Confidence 5 4455555555543 344444444444443
No 315
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=30.25 E-value=1.9e+02 Score=22.33 Aligned_cols=51 Identities=8% Similarity=0.045 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 037409 82 TSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 82 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 132 (603)
.....++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 334455556655556666666666666555445555555555556555543
No 316
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=28.25 E-value=2.9e+02 Score=23.82 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHH---CCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEA---KNCVPSEVTFCTLLR-----GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 521 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.+.+.|+++.+ ..++|...+...|+- -|--.++.++|..+.+++.+
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666543 246776555444432 23457999999988887764
No 317
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.24 E-value=3.2e+02 Score=24.33 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 037409 227 YNSIIDGLCKDGFVDKAKELLLQMK 251 (603)
Q Consensus 227 ~~~l~~~~~~~g~~~~a~~~~~~~~ 251 (603)
...++.-|...|+.++|...++++.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3567778888888888888888764
No 318
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.96 E-value=1.8e+02 Score=22.80 Aligned_cols=25 Identities=12% Similarity=0.242 Sum_probs=11.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhC
Q 037409 229 SIIDGLCKDGFVDKAKELLLQMKDR 253 (603)
Q Consensus 229 ~l~~~~~~~g~~~~a~~~~~~~~~~ 253 (603)
.++..+...+..-.|.++++.+.+.
T Consensus 37 ~IL~~L~~~~~h~sA~eI~~~l~~~ 61 (162)
T 4ets_A 37 VLLKTLYHSDTHYTPESLYMEIKQA 61 (162)
T ss_dssp HHHHHHHSCCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhh
Confidence 3444444444444555555555443
No 319
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.95 E-value=2.4e+02 Score=22.71 Aligned_cols=153 Identities=12% Similarity=0.033 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 037409 114 PDLFVLNLLINCLCKMGITSGAFVVLGRILRSCFTPNTVTFNFLINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLI 193 (603)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 193 (603)
+|...-...+..+...|..+. ...+..+.. .++..+-...+.++...|..+.. ..+.++.. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERA-VEPLIKALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhH-HHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 344444444445555554322 222223332 23555555566666666654333 33333332 45666666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhcCCccCCChhhHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 037409 194 NGLCRTRNTLVALKLFEEMVNEFGAICKPDVVTYNSIIDGLCKDGFVDKAKELLLQMKDRNINPNVITYNSLICGFCCVD 273 (603)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 273 (603)
.++.+.++.+ +...+..+.. .++...-...+.++...+..+ +...+..+.. .++..+-...+.++...|
T Consensus 98 ~aL~~~~~~~-~~~~L~~~l~------d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 98 VALGQIGDER-AVEPLIKALK------DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT------CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHC
T ss_pred HHHHHhCcHH-HHHHHHHHHc------CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhC
Confidence 6666666643 3333333332 245555555666666665533 3333333332 134455555555555555
Q ss_pred CHHHHHHHHHHHH
Q 037409 274 DWKEAKCLFIEMM 286 (603)
Q Consensus 274 ~~~~A~~~~~~~~ 286 (603)
+ .++...+..+.
T Consensus 167 ~-~~~~~~L~~~l 178 (201)
T 3ltj_A 167 G-ERVRAAMEKLA 178 (201)
T ss_dssp S-HHHHHHHHHHH
T ss_pred c-hhHHHHHHHHH
Confidence 4 33444444444
No 320
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.15 E-value=2.9e+02 Score=23.50 Aligned_cols=12 Identities=25% Similarity=0.410 Sum_probs=5.0
Q ss_pred hcCCHHHHHHHH
Q 037409 411 QVGNLGDALKLI 422 (603)
Q Consensus 411 ~~~~~~~a~~~~ 422 (603)
..|+.+-+..++
T Consensus 228 ~~~~~~~v~~Ll 239 (285)
T 1wdy_A 228 EKKHLGLVQRLL 239 (285)
T ss_dssp HTTCHHHHHHHH
T ss_pred HcCCHHHHHHHH
Confidence 344444433333
No 321
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=27.08 E-value=2.3e+02 Score=27.40 Aligned_cols=72 Identities=15% Similarity=0.130 Sum_probs=51.6
Q ss_pred hhccCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037409 55 HKSGNITSNEAVYFFDCMIKMKPSPGMTSFTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCK 128 (603)
Q Consensus 55 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 128 (603)
+..+...++.|...|.++....|. +-..||.++-.....|+.-+|.-.|-+.+... .|-+.+...+...+.+
T Consensus 161 L~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 161 IARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Confidence 444567778888888888888766 56678888887777888777777777766554 5666666666665543
No 322
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.08 E-value=2.5e+02 Score=22.38 Aligned_cols=12 Identities=33% Similarity=0.379 Sum_probs=4.9
Q ss_pred hcCChhHHHHHH
Q 037409 236 KDGFVDKAKELL 247 (603)
Q Consensus 236 ~~g~~~~a~~~~ 247 (603)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444443333
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=25.48 E-value=2.6e+02 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=9.9
Q ss_pred HHhcCChHHHHHHHHHHHHhc
Q 037409 196 LCRTRNTLVALKLFEEMVNEF 216 (603)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~ 216 (603)
.+..|+.+.-.++.+.+++.+
T Consensus 45 A~~~~~~~~~~~iv~~Ll~~G 65 (186)
T 3t8k_A 45 VLRNNNDEARYKISMFLINKG 65 (186)
T ss_dssp HTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHcCCcchHHHHHHHHHHCC
Confidence 334444444444555555544
No 324
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.35 E-value=2.9e+02 Score=22.94 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=13.7
Q ss_pred HHHHHhCCChhHHHHHHHHHhhC
Q 037409 476 INGLCKMGRLKTACKLFHRLQHK 498 (603)
Q Consensus 476 ~~~~~~~g~~~~A~~~~~~~~~~ 498 (603)
+..|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 34456666666666666666553
No 325
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=23.53 E-value=1.5e+02 Score=19.09 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037409 507 CSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGF 549 (603)
Q Consensus 507 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 549 (603)
++.++..++...-.++++..+.++++.| ..+...|..-.+.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3444444555455555666666666555 44555544444433
No 326
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=23.32 E-value=78 Score=27.09 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=11.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC
Q 037409 304 NCKDGKMDKVNRLLELMIQRGVN 326 (603)
Q Consensus 304 ~~~~~~~~~a~~~~~~~~~~~~~ 326 (603)
.++.|+.+....+++.+.+.+..
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~ 34 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKR 34 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCCC
Confidence 34455555555555555444433
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=23.16 E-value=4.9e+02 Score=24.70 Aligned_cols=152 Identities=8% Similarity=-0.062 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH--------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHhhHHHHHHHHHh
Q 037409 344 RISRARELFVSMVS--------KGCRHDVYSYNILINANCKDQKVEDAVCLYREMLSERI----RPSVITYNTLLSGLFQ 411 (603)
Q Consensus 344 ~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~ 411 (603)
..++...++..... .++..+......++.. ..|+..+++.+++.+..... .....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Q ss_pred c------------------------CCHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC-----HHHHHHHHHHHHH
Q 037409 412 V------------------------GNLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF-----VLEAVQVFQAIRN 462 (603)
Q Consensus 412 ~------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~ 462 (603)
. ++.+.|+.++..|.+.|..|....-..+..+...-|. ...|...++....
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Q ss_pred cCCCCChHHHHHHHHHHHhCCChhHHHHHHHHHhh
Q 037409 463 CKCELRIETYNCLINGLCKMGRLKTACKLFHRLQH 497 (603)
Q Consensus 463 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 497 (603)
.|.|--...+...+-.++..-.-..+...++.+.+
T Consensus 324 ~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 324 VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 328
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=22.88 E-value=1.7e+02 Score=21.91 Aligned_cols=48 Identities=15% Similarity=0.241 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 037409 85 TILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 85 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 132 (603)
..++..+...+.+-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 355666666666777777777777765555666666666666666643
No 329
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=22.74 E-value=2.9e+02 Score=21.96 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=4.9
Q ss_pred hcCCHHHHHHHH
Q 037409 306 KDGKMDKVNRLL 317 (603)
Q Consensus 306 ~~~~~~~a~~~~ 317 (603)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 344444443333
No 330
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=22.67 E-value=4.7e+02 Score=24.36 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=20.8
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHhhc
Q 037409 577 LSSKVVDLLSKDKKYRECLNQFRHLL 602 (603)
Q Consensus 577 ~~~~l~~~~~~~g~~~eA~~~~~~~l 602 (603)
.+...+..+...|+++.|.++++.++
T Consensus 338 ~~~eYA~lLA~qG~l~~A~~yL~~lp 363 (399)
T 2pm7_A 338 KFLEFINLTTSTGNFELATEFLNSLP 363 (399)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCC
Confidence 34556778889999999999998654
No 331
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.53 E-value=2.7e+02 Score=21.45 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037409 518 GQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQ 551 (603)
Q Consensus 518 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 551 (603)
+..-.|.++++.+.+.+...+..|....+..+.+
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 73 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEK 73 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 3334444444444433322333333333333333
No 332
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=21.77 E-value=3.7e+02 Score=22.77 Aligned_cols=47 Identities=9% Similarity=-0.066 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHC---CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEAK---NCVPSEVTFCTLLR-----GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 521 ~~A~~~~~~~~~~---~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.|.+.|+++.+. .++|...+...|+- -|--.++.++|..+.+++.+
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555666655432 35776655444432 34458999999988887764
No 333
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.64 E-value=2.2e+02 Score=21.45 Aligned_cols=60 Identities=10% Similarity=-0.000 Sum_probs=0.0
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCC
Q 037409 388 REMLSERIRPSVITYNTLLSGLFQVG-NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNG 448 (603)
Q Consensus 388 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (603)
+.+.+.|.+ .+..-..++..+...+ ..-.|.++++.+.+.++..+..|...-+..+...|
T Consensus 7 ~~l~~~g~r-~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 7 SELRKAGLK-VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHHHHTTCC-CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCC-CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 334
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.51 E-value=3.6e+02 Score=22.53 Aligned_cols=50 Identities=8% Similarity=0.073 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNC 535 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 535 (603)
.+....+++.+.+.|.-.|..--..++......+.+ ....+-.++...|+
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI 141 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGI 141 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCC
Confidence 345556666666666653443333444444332111 23444556666664
No 335
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=21.46 E-value=2.9e+02 Score=21.52 Aligned_cols=99 Identities=10% Similarity=0.024 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhhCCCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037409 485 LKTACKLFHRLQHKGPIPDVVTCSTMIHWLCKEGQMDKANDLLLDMEAKNCVPSEVTFCTLLRGFVQNNKKSKVVVLLHK 564 (603)
Q Consensus 485 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 564 (603)
.+....+++.+.+.|.-.|...-..++......|. ....+-.++...|+.+ .+....+..+ .....+.|..++++
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g~--G~~~I~~eL~~KGI~~--~~i~~al~~~-~~d~~~~a~~l~~k 120 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGY--GPARIRQELNQKGISR--EATEKAMREA-DIDWAALARDQATR 120 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHTTCCH--HHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHcCCCH--HHHHHHHHHc-CHhHHHHHHHHHHH
Confidence 34455666666666665344333444554444331 2345556666666432 2222222222 11223344444443
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHcCC
Q 037409 565 MAAEKLVVSDLSLSSKVVDLLSKDK 589 (603)
Q Consensus 565 ~~~~~~~~~~~~~~~~l~~~~~~~g 589 (603)
-... ..+++......+...+.+.|
T Consensus 121 k~~~-~~~~~~~~~~K~~~~L~rrG 144 (159)
T 3c1d_A 121 KYGE-PLPTVFSEKVKIQRFLLYRG 144 (159)
T ss_dssp HHCS-SCCCSHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCCCHHHHHHHHHHHHHCC
Confidence 3221 11134455566666666666
No 336
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.24 E-value=1.5e+02 Score=22.55 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCc
Q 037409 84 FTILLTMLAKNKQYDTVVSLFKRLNSNGLFPDLFVLNLLINCLCKMGIT 132 (603)
Q Consensus 84 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 132 (603)
...++..+...+++-.|.++++.+.+.+...+..|....+..+...|-.
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455666666666777777777777666555666666666666666643
No 337
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=20.86 E-value=1.7e+02 Score=25.15 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=47.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037409 509 TMIHWLCKEGQMDKANDLLLDMEAK-NCVPSEVTFCTLLRGFVQNNKKSKVVVLLHKMA 566 (603)
Q Consensus 509 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 566 (603)
.+-..|....++.....++..|... ...|+.....+++++|.+.-+-.+|.+.++...
T Consensus 178 GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~L 236 (268)
T 2fv2_A 178 GLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCL 236 (268)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHS
T ss_pred hHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 4445566667888888889888864 336889999999999999999999999998876
No 338
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.78 E-value=3e+02 Score=21.35 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=10.1
Q ss_pred HHHHHHhcCChhHHHHHHHHH
Q 037409 230 IIDGLCKDGFVDKAKELLLQM 250 (603)
Q Consensus 230 l~~~~~~~g~~~~a~~~~~~~ 250 (603)
++.-|...|+.++|.+.++++
T Consensus 15 lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 15 LLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 444444445555555544444
No 339
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=20.47 E-value=2.3e+02 Score=21.79 Aligned_cols=45 Identities=18% Similarity=0.008 Sum_probs=22.3
Q ss_pred HHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhCCC
Q 037409 405 LLSGLFQVG-NLGDALKLIDKMQLNDVVPDSFTFATYIDGLCKNGF 449 (603)
Q Consensus 405 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (603)
++..+...+ .+-.|.++++.+.+.++..+..|...-+..+...|-
T Consensus 22 Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 22 ILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 333343333 445556666665555444455554445555554443
No 340
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=20.41 E-value=3.9e+02 Score=22.61 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHH---CCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 037409 521 DKANDLLLDMEA---KNCVPSEVTFCTLLR-----GFVQNNKKSKVVVLLHKMAA 567 (603)
Q Consensus 521 ~~A~~~~~~~~~---~~~~~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~ 567 (603)
+.+.+.|+++.+ ..++|...+...|+- -|--.++.++|..+.+++.+
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666543 246776655444432 34467899999888887764
No 341
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=20.34 E-value=1.3e+02 Score=21.00 Aligned_cols=48 Identities=2% Similarity=-0.119 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhcCChhHHHHHHHHHH
Q 037409 59 NITSNEAVYFFDCMIKMKPSPGMTSFTILLTM-----LAKNKQYDTVVSLFKRLN 108 (603)
Q Consensus 59 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~ 108 (603)
.|++=+|-++++......+.+.-..|..+|+. ..+.|+. |..++.+..
T Consensus 14 ~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~ 66 (94)
T 2cwy_A 14 AGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAE 66 (94)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHH
Confidence 45666666666665554433333334443332 1234444 555555443
No 342
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.23 E-value=2.1e+02 Score=27.33 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHhhCCCCCC--------HhHHH-HHHHHHHHcCChhHHHHHHHHHHH
Q 037409 472 YNCLINGLCKMGRLKTACKLFHRLQHKGPIPD--------VVTCS-TMIHWLCKEGQMDKANDLLLDMEA 532 (603)
Q Consensus 472 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~ 532 (603)
.+.+...|.+.++...+..+++.+...+..|+ ..+|. .++..+...+++.+|.+.+..+..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 45555666666666666666665555433211 22332 334445566666666666655554
No 343
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.10 E-value=2.5e+02 Score=21.45 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=21.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhcC
Q 037409 157 LINGLCAEGRIMEAARLFKKLNVFACDPNVVTFNTLINGLCRTR 200 (603)
Q Consensus 157 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (603)
++..+...+ .-.|.++++.+.+.+...+..|....+..+...|
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 334444444 4556666666655543344444444445554444
Done!