BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037410
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
++ G TPL +AA+ GH ++V +L+ GAD +++ T LH
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQ---------------GAD---PNAKDSDGKTPLH 75
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
A +G+ VVK+L QG D P + ++ GKTPL++AA+ + E+V LL
Sbjct: 76 LAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 23/127 (18%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+E+++L S + NAK G TPL +AA+ GH ++V +L+ GA
Sbjct: 50 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ---------------GA 94
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
D +++ T LH A +G+ VVK+L QG D P ++++ G+TPL + A+ +E
Sbjct: 95 D---PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDL-AREHGNE 149
Query: 119 MVIELLE 125
V++LLE
Sbjct: 150 EVVKLLE 156
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 19/99 (19%)
Query: 26 AAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHV 85
AA+ G+ D V L++ GAD + ++++ T LH A +G+ V
Sbjct: 11 AAENGNKDRVKDLLEN---------------GAD---VNASDSDGKTPLHLAAENGHKEV 52
Query: 86 VKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
VK+L QG D P + ++ GKTPL++AA+ + E+V LL
Sbjct: 53 VKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLL 90
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 21/95 (22%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+E+++L S + NAK G TPL +AA+ GH ++V +L+ GA
Sbjct: 83 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ---------------GA 127
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG 93
D ++++ T L A HGN VVK+L KQG
Sbjct: 128 D---PNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 22/128 (17%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
E+++L +VNAK G TPL +AA+ GH ++V +L++ GAD
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---------------GAD 60
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEM 119
+ + T LH A +G++ VVK+L + G D N G+TPL++AA+ + E+
Sbjct: 61 ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEV 116
Query: 120 VIELLETA 127
V LLE
Sbjct: 117 VKLLLEAG 124
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G TPL +AA+ GH ++V +L++ GAD + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAA 43
Query: 79 CHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPMKAPTER 138
+G++ VVK+L + G D N G+TPL++AA+ + E+V LLE K R
Sbjct: 44 RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 68/127 (53%), Gaps = 23/127 (18%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+EI++L S +VNAK G TPL AAK GH +IV +L+ GA
Sbjct: 50 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK---------------GA 94
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
D + +++ T LH A G+ +VK+L +G D ++++ G+TPL + A+ +E
Sbjct: 95 D---VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDL-AREHGNE 149
Query: 119 MVIELLE 125
+++LLE
Sbjct: 150 EIVKLLE 156
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 19/105 (18%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
++ G TPL AAK GH +IV +L+ GAD + +++ T LH
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISK---------------GAD---VNAKDSDGRTPLH 75
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMV 120
A G+ +VK+L +G D + ++ G+TPL+ AAK + E+V
Sbjct: 76 YAAKEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIV 119
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+EI++L S +VNAK G TPL AAK GH +IV +L+ GA
Sbjct: 83 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK---------------GA 127
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG 93
D + ++++ T L A HGN +VK+L KQG
Sbjct: 128 D---VNTSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%), Gaps = 19/113 (16%)
Query: 26 AAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHV 85
AA+ G+ D V L++ GAD + ++++ T LH A G+ +
Sbjct: 11 AAENGNKDRVKDLIEN---------------GAD---VNASDSDGRTPLHYAAKEGHKEI 52
Query: 86 VKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPMKAPTER 138
VK+L +G D + ++ G+TPL+ AAK + E+V L+ K R
Sbjct: 53 VKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR 104
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 62/115 (53%), Gaps = 22/115 (19%)
Query: 14 NVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA+ D TPL +AA GH +IV VL++ GAD + A+
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH---------------GAD---VNAADKMG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+T LH A +G++ +V++L K G D + + YG TPL++AA + E+V LL+
Sbjct: 81 DTPLHLAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNA GDTPL +AA +GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKN---------------GAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
+ + T LH A G++ +V++L K G D + + +GKT
Sbjct: 106 ---VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD-VNAQDKFGKTAF 150
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 22/117 (18%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA+ G TPL +AA FGH +IV VL++ GAD + ++
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKN---------------GAD---VNAKDSLG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
T LH A G++ +V++L K G D +++++G TPL++AAK + E+V LL+
Sbjct: 81 VTPLHLAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 25/113 (22%)
Query: 5 LELCPSLLLN---VNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N VNAK G TPL +AA+ GH +IV VL++ GA
Sbjct: 60 LEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKN---------------GA 104
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
D + +++ T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 105 D---VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD-VNAQDKFGKTAFDIS 153
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 22/115 (19%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA+ GDTPL +AA+ GH +IV VL++ GAD + +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG--- 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+T LH A G++ +V++L K G D + + G TPL++AA + E+V LL+
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGAD-VNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 5 LELCPSLLLN---VNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N VNA G TPL +AAK GH +IV VL++ GA
Sbjct: 60 LEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK---------------YGA 104
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
D + + +T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 105 D---VNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD-VNAQDKFGKTAFDIS 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 19/110 (17%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+A G TPL +AA +GH +IV VL++ GAD I + +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKH---------------GADVNAIDIXG---STPLH 85
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
A G++ +V++L K G D + + +G TPL++AA + E+V LL+
Sbjct: 86 LAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 22/112 (19%)
Query: 3 EILELCPSLLLNVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNA G TPL +AA GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH---------------GAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 106 ---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDIS 153
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 23/127 (18%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+E+++L S +VNAK G TPL AA+ GH ++V +L+ GA
Sbjct: 50 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK---------------GA 94
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
D + +++ T LH A +G+ VVK+L +G D ++++ G+TPL + A+ +E
Sbjct: 95 D---VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDL-AREHGNE 149
Query: 119 MVIELLE 125
V++LLE
Sbjct: 150 EVVKLLE 156
Score = 46.2 bits (108), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 19/105 (18%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
++ G TPL AA+ GH ++V +L+ GAD + +++ T LH
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISK---------------GAD---VNAKDSDGRTPLH 75
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMV 120
A +G+ VVK+L +G D + ++ G+TPL+ AA+ + E+V
Sbjct: 76 HAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVV 119
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 21/95 (22%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+E+++L S +VNAK G TPL AA+ GH ++V +L+ GA
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK---------------GA 127
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG 93
D + ++++ T L A HGN VVK+L KQG
Sbjct: 128 D---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 19/113 (16%)
Query: 26 AAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHV 85
AA+ G+ D V L++ GAD + ++++ T LH A +G+ V
Sbjct: 11 AAENGNKDRVKDLIEN---------------GAD---VNASDSDGRTPLHHAAENGHKEV 52
Query: 86 VKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPMKAPTER 138
VK+L +G D + ++ G+TPL+ AA+ + E+V L+ K R
Sbjct: 53 VKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR 104
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 19/110 (17%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+A G TPL +AA +GH +IV VL++ GAD I + +T LH
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKH---------------GADVNAIDIMG---STPLH 85
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
A G++ +V++L K G D + + +G TPL++AA + E+V LL+
Sbjct: 86 LAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 22/112 (19%)
Query: 3 EILELCPSLLLNVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNA G TPL +AA GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH---------------GAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 106 ---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD-VNAQDKFGKTAFDIS 153
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 49.3 bits (116), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 19/109 (17%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G TPL +AA+ GH ++V +L++ GAD + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA---------------GAD---VNAKDKNGRTPLHLAA 43
Query: 79 CHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
+G++ VVK+L + G D N G+TPL++AA+ + E+V LLE
Sbjct: 44 RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAG 91
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 21/94 (22%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
E+++L +VNAK G TPL +AA+ GH ++V +L++ GAD
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA---------------GAD 60
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG 93
+ + T LH A +G++ VVK+L + G
Sbjct: 61 ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 23/128 (17%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNAK G TPL +AA+ GH +IV VL++ GAD
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD 93
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEM 119
+ + + T LH A G++ +V++L K G D + + +GKTP +A + + E
Sbjct: 94 ---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAIREGH-ED 148
Query: 120 VIELLETA 127
+ E+L+ A
Sbjct: 149 IAEVLQKA 156
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 24/117 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNAK G TPL +AA+ GH +IV VL++ GAD + + +
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD---VNAKDKDG 68
Query: 71 NTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
T LH A G++ +V++L K G D N + Y TPL++AA+ + E+V LL+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKA 123
Score = 29.3 bits (64), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTA 42
EI+E+ +VNA+ G TP +A + GH DI VL + A
Sbjct: 115 EIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 24/116 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AAK GH +IV VL++ GAD + +N
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLK---------------YGAD---VNAWDNYG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNY-GKTPLYMAAKGRYSEMVIELLE 125
T LH A +G++ +V++L K G D +A +Y G TPL++AA + E+V LL+
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGAD--VNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNA G TPL +AA GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKH---------------GAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
+ + E T LH A G++ +V++L K G D + + +GKT
Sbjct: 106 ---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD-VNAQDKFGKTAF 150
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 61/116 (52%), Gaps = 24/116 (20%)
Query: 14 NVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA +G TPL +AA GH +IV VL++ GAD + + +
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH---------------GAD---VNARDTDG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A +G++ +V++L K G D N A YG TPL++AA + E+V LL+
Sbjct: 81 WTPLHLAADNGHLEIVEVLLKYGADVNAQDA--YGLTPLHLAADRGHLEIVEVLLK 134
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 19/108 (17%)
Query: 18 KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEA 77
KG TPL VAAK+G + +L++ D P + A T LH A
Sbjct: 145 KGFTPLHVAAKYGKVRVAELLLER-------DAHPNA-----------AGKNGLTPLHVA 186
Query: 78 VCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
V H N+ +VK+L +G +P+S G TPL++AAK E+ LL+
Sbjct: 187 VHHNNLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
N K +TPL +AA+ GH+++ L+Q ++ + + T LH
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQ------------------NKAKVNAKAKDDQTPLH 85
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
A G+ ++VK+L + NP A G TPL++AA+ + E V+ LLE
Sbjct: 86 CAARIGHTNMVKLLLENNA-NPNLATTAGHTPLHIAAREGHVETVLALLE 134
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 18 KGDTPLRVAAKFGHSDIVSVLVQTAK---------------IAQHGDGEPESGIGADRQM 62
+G TPL +AA+ GH+++V++L+ +AQ G + M
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM 303
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIE 122
+ T LH A +GN+ +VK L + D + G +PL+ AA+ ++++V
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTL 362
Query: 123 LLE 125
LL+
Sbjct: 363 LLK 365
Score = 33.1 bits (74), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 19/98 (19%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G TPL VA+ +G+ +V L+Q D ++ +G + LH+A
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQ-----HQADVNAKTKLGY-------------SPLHQAA 352
Query: 79 CHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRY 116
G+ +V +L K G +P ++ G TPL +A + Y
Sbjct: 353 QQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGY 389
Score = 32.7 bits (73), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCP 131
T LH A G++ +VK L ++G +P +N +TPL+MAA+ ++E+ LL+ +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGA-SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 132 MKAPTER 138
KA ++
Sbjct: 75 AKAKDDQ 81
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 19/109 (17%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
++ G TPL AA+ GH +IV +L+ GAD +++ T LH
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSK---------------GADPN---AKDSDGRTPLH 75
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
A +G+ +VK+L +G D P + ++ G+TPL+ AA+ + E+V LL
Sbjct: 76 YAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 23/127 (18%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+EI++L S + NAK G TPL AA+ GH +IV +L+ GA
Sbjct: 50 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK---------------GA 94
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
D +++ T LH A +G+ +VK+L +G D P ++++ G+TPL + A+ +E
Sbjct: 95 DPNA---KDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDL-AREHGNE 149
Query: 119 MVIELLE 125
+++LLE
Sbjct: 150 EIVKLLE 156
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
+EI++L S + NAK G TPL AA+ GH +IV +L+ GA
Sbjct: 83 KEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK---------------GA 127
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG 93
D ++++ T L A HGN +VK+L KQG
Sbjct: 128 DPN---TSDSDGRTPLDLAREHGNEEIVKLLEKQG 159
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 66 ANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
++++ T LH A +G+ +VK+L +G D P + ++ G+TPL+ AA+ + E+V LL
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
EA +GN VK L + G D P ++++ G+TPL+ AA+ + E+V LL
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLL 57
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 65/128 (50%), Gaps = 23/128 (17%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNAK G TPL +AA+ GH +IV VL++ GAD
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD 93
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEM 119
+ + + T LH A G++ +V++L K G D + + +GKTP +A +E
Sbjct: 94 ---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTPFDLAID-NGNED 148
Query: 120 VIELLETA 127
+ E+L+ A
Sbjct: 149 IAEVLQKA 156
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 24/117 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNAK G TPL +AA+ GH +IV VL++ GAD + + +
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD---VNAKDKDG 68
Query: 71 NTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
T LH A G++ +V++L K G D N + Y TPL++AA+ + E+V LL+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKA 123
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 24/118 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNAK G TPL +AA+ GH +IV VL++ GAD + + +
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD---VNAKDKDG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
T LH A G++ +V++L K G D N + Y TPL++AA+ + E+V LL+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGY--TPLHLAAREGHLEIVEVLLKAG 136
Score = 42.7 bits (99), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 22/112 (19%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNAK G TPL +AA+ GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + + T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 106 ---VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDKFGKTAFDIS 153
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 24/116 (20%)
Query: 14 NVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AA GH +IV VL++ GAD + ++
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKN---------------GAD---VNASDLTG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ +V++L K G D N Y +N G TPL++AAK + E+V LL+
Sbjct: 81 ITPLHLAAATGHLEIVEVLLKHGADVNAY--DNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 25/110 (22%)
Query: 5 LELCPSLLLN---VNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N VNA G TPL +AA GH +IV VL++ GA
Sbjct: 60 LEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH---------------GA 104
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
D + +N+ +T LH A +G++ +V++L K G D + + +GKT
Sbjct: 105 D---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD-VNAQDKFGKTAF 150
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTK 91
SD+ L++ A+ Q + GAD + +N+ T LH A +G++ +V++L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 92 QGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
G D +++ G TPL++AA + E+V LL+
Sbjct: 69 NGAD-VNASDLTGITPLHLAAATGHLEIVEVLLK 101
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 3 EILELCPSLLLNVNA---KGDTPLRVAAKFGHSDIVSVLVQ 40
EI+E+ +VNA G TPL +AAK+GH +IV VL++
Sbjct: 94 EIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 24/116 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AA FGH +IV VL++ D + +G
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG-----ADVNADDSLGV------------ 81
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNY-GKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ VV++L K G D +AN++ G TPL++AA + E+V LL+
Sbjct: 82 -TPLHLAADRGHLEVVEVLLKNGAD--VNANDHNGFTPLHLAANIGHLEIVEVLLK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 25/113 (22%)
Query: 5 LELCPSLLLN------VNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N V+ G TPLR+AA FGH +IV VL++ GA
Sbjct: 60 LEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------GA 104
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
D M E +T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 105 DVNANDM---EGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDIS 153
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 56/113 (49%), Gaps = 21/113 (18%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+A G TPL +AA GH +IV VL++ GAD + A T L
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKN---------------GADVNAVDHAG---MTPLR 85
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNY-GKTPLYMAAKGRYSEMVIELLETA 127
A G++ +V++L K G D +AN+ G TPL++AA + E+V LL+
Sbjct: 86 LAALFGHLEIVEVLLKNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG 136
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 22/115 (19%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AA GH +IV VL++ GAD + ++
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKH---------------GAD---VDASDVFG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ +V++L K G D + ++ G TPL++AAK Y E+V LL+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTK 91
SD+ L++ A+ Q + GAD + A+N T LH A G++ +V++L K
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGAD---VNAADNTGTTPLHLAAYSGHLEIVEVLLK 68
Query: 92 QGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
G D S + +G TPL++AA + E+V LL+
Sbjct: 69 HGADVDAS-DVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 22/109 (20%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +V+A G TPL +AA +GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN---------------GAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
+ +++ T LH A G + +V++L K G D + + +GKT
Sbjct: 106 ---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD-VNAQDKFGKTAF 150
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 21/108 (19%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G TPL +AA GH +IV VL++ GAD + + T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLLRN---------------GAD---VNAVDTNGTTPLHLAA 76
Query: 79 CHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
G++ +V++L K G D N A G TPLY+AA + E+V LL+
Sbjct: 77 SLGHLEIVEVLLKYGADVNAKDAT--GITPLYLAAYWGHLEIVEVLLK 122
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 25/110 (22%)
Query: 5 LELCPSLLLN------VNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N V+ G TPL +AA GH +IV VL++ GA
Sbjct: 48 LEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK---------------YGA 92
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
D + + T L+ A G++ +V++L K G D + + +GKT
Sbjct: 93 D---VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD-VNAQDKFGKTAF 138
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 74 LHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELL 124
L EA G V+IL G D N Y ++YG+TPL+MAA + E+V LL
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLL 55
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 22/115 (19%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AA +GH +IV VL++ GAD + +
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKN---------------GAD---VNAYDTLG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+T LH A G++ +V++L K G D +N G TPL++AA + E+V LL+
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLK 134
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 25/110 (22%)
Query: 5 LELCPSLLLN---VNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N VNA G TPL +AA FGH +IV VL++ GA
Sbjct: 60 LEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN---------------GA 104
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
D + ++ T LH A G++ +V++L K G D + + +GKT
Sbjct: 105 D---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD-VNAQDKFGKTAF 150
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 22/101 (21%)
Query: 14 NVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA KG+TPL +AA + H +IV VL++ GAD + +N+
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKH---------------GAD---VNAHDNDG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 81 STPLHLAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDIS 120
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK-NTALHEAVCHGNVHVVKILT 90
SD+ L++ A+ Q + GAD AN+ K NT LH A + ++ +V++L
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVN----ANDRKGNTPLHLAADYDHLEIVEVLL 67
Query: 91 KQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
K G D + +N G TPL++AA + E+V LL+
Sbjct: 68 KHGAD-VNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 3 EILELCPSLLLNVNA---KGDTPLRVAAKFGHSDIVSVLVQ 40
EI+E+ +VNA G TPL +AA FGH +IV VL++
Sbjct: 61 EIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 25/89 (28%)
Query: 12 LLNVNAK-------GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIR 64
LL+ NAK G+TPL A GH ++V++L+Q HG I
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ------HGAS------------IN 179
Query: 65 MANNEKNTALHEAVCHGNVHVVKILTKQG 93
+NN+ NTALHEAV +V VV++L G
Sbjct: 180 ASNNKGNTALHEAVIEKHVFVVELLLLHG 208
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 20/116 (17%)
Query: 11 LLLNVNAK-GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
L +NV ++ G +PL VAA G +D++ +L+ +HG + GA N +
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLL------KHG-----ANAGA-------RNAD 118
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+ LH A G+ VVK L P + G TPL A G + E+V LL+
Sbjct: 119 QAVPLHLACQQGHFQVVKCLLDSNA-KPNKKDLSGNTPLIYACSGGHHELVALLLQ 173
Score = 31.2 bits (69), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 52 PESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
P SG+G + + + + ++ LH A HG ++ +L K G N + N PL++A
Sbjct: 73 PASGLG-----VNVTSQDGSSPLHVAALHGRADLIPLLLKHGA-NAGARNADQAVPLHLA 126
Query: 112 AKGRYSEMVIELLET 126
+ + ++V LL++
Sbjct: 127 CQQGHFQVVKCLLDS 141
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 18/125 (14%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAK--IAQHGDGEPESGIGADR------------- 60
+A+G T L +AAK GH ++V L+ + + DG I A
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 61 -QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAK-GRYSE 118
I + +NE+N LH A G V + +IL D ++ N +G +PL++AA+ RY
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDC 192
Query: 119 MVIEL 123
+V+ L
Sbjct: 193 VVLFL 197
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 16/137 (11%)
Query: 21 TPLRVAAKFGHSDIVSVLVQTA---------------KIAQHGDGEPESGIGADRQMIRM 65
+PL AA+ GH DI +LVQ + A++ E + ++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 66 ANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+ E +T LH A G+ VV+ L G + ++ G TP+ A + ++ ++V LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 126 TAHQCPMKAPTERQLCM 142
++ E +C+
Sbjct: 133 KGSDINIR-DNEENICL 148
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIE 122
+M + K + LH A G+V + +L + G N + + +TPL AA+ + E V
Sbjct: 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA-NIDTCSEDQRTPLMEAAENNHLEAVKY 62
Query: 123 LLET 126
L++
Sbjct: 63 LIKA 66
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 15 VNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTAL 74
V+ G TPL +AA GH +IV VL++ GAD + A+ T L
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKH---------------GAD---VDAADVYGFTPL 84
Query: 75 HEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
H A G++ +V++L K G D N + G TPL++AA + E+V LL+
Sbjct: 85 HLAAMTGHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLK 134
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTK 91
SD+ L++ A+ Q + GAD + +N T LH A G++ +V++L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGAD---VNAVDNTGLTPLHLAAVSGHLEIVEVLLK 68
Query: 92 QGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
G D +A+ YG TPL++AA + E+V LL+
Sbjct: 69 HGADVD-AADVYGFTPLHLAAMTGHLEIVEVLLK 101
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +V+A G TPL +AA GH +IV VL++ GAD
Sbjct: 61 EIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK---------------YGAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
M + T LH A G++ +V++L K G D + + +GKT
Sbjct: 106 VNAFDMTGS---TPLHLAADEGHLEIVEVLLKYGAD-VNAQDKFGKTAF 150
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 22/109 (20%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G+TPL AAK GH++ V L+ GAD + + + NT LH A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSK---------------GAD---VNARSKDGNTPLHLAA 50
Query: 79 CHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
+G+ +VK+L +G D N S + G TP ++A K + E +++LL+
Sbjct: 51 KNGHAEIVKLLLAKGADVNARSKD--GNTPEHLAKKNGHHE-IVKLLDA 96
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 24/108 (22%)
Query: 2 EEILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
EE+ +L S +VNA+ G+TPL +AAK GH++IV +L+ GA
Sbjct: 23 EEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK---------------GA 66
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKT 106
D + + + NT H A +G+ +VK+L +G D +A ++G +
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD--VNARSWGSS 109
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 69 EKNTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMVIELL 124
+ NT LH A +G+ VK L +G D N S + G TPL++AAK ++E+V LL
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLL 62
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+V+AK G PL A +GH ++ +LV+ HG ++ +A+ K
Sbjct: 71 DVHAKDKGGLVPLHNACSYGHYEVAELLVK------HG------------AVVNVADLWK 112
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKG 114
T LHEA G + K+L + G D P N G TPL + G
Sbjct: 113 FTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 155
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+V+AK G PL A +GH ++ +LV+ HG ++ +A+ K
Sbjct: 67 DVHAKDKGGLVPLHNACSYGHYEVAELLVK------HG------------AVVNVADLWK 108
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKG 114
T LHEA G + K+L + G D P N G TPL + G
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 151
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 14 NVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AA+ GH +IV VL++ GAD + +N
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKY---------------GAD---VNAEDNFG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LH A G++ +V++L K G D + + +GKT ++
Sbjct: 81 ITPLHLAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDIS 120
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTK 91
SD+ L++ A+ Q + GAD + + + T LH A G++ +V++L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNALDEDGLTPLHLAAQLGHLEIVEVLLK 68
Query: 92 QGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
G D + +N+G TPL++AA + E+V LL+
Sbjct: 69 YGAD-VNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+V+AK G PL A +GH ++ +LV+ HG ++ +A+ K
Sbjct: 69 DVHAKDKGGLVPLHNACSYGHYEVAELLVK------HG------------AVVNVADLWK 110
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKG 114
T LHEA G + K+L + G D P N G TPL + G
Sbjct: 111 FTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKDG 153
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 24/116 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL + GH +I+ VL++ A AD + ++
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYA---------------AD---VNASDKSG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNY-GKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ +V++L K G D +A +Y G TPL++AA+ + E+V LL+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGAD--VNAMDYQGYTPLHLAAEDGHLEIVEVLLK 134
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 3 EILELCPSLLLNVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNA G TPL +AA GH +IV VL++ GAD
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK---------------YGAD 105
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
+ + + T LH A G++ +V++L K G D + + +GKT
Sbjct: 106 ---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD-VNAQDKFGKTAF 150
Score = 30.0 bits (66), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 21/92 (22%)
Query: 3 EILELCPSLLLNVNA---KGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E+ +VNA +G TPL +AA+ GH +IV VL++ GAD
Sbjct: 94 EIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLK---------------YGAD 138
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTK 91
+ + TA ++ +GN + +IL K
Sbjct: 139 ---VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 65 MANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
+ N+E TALH AVC G+ +VK L + G N +A++ G TPL+ AA
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAA 111
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
N +G T L A GH++IV LVQ G + + A+++ T LH
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ---------------FGVN---VNAADSDGWTPLH 108
Query: 76 EAVCHGNVHVVKILTKQG 93
A NV V K L + G
Sbjct: 109 CAASCNNVQVCKFLVESG 126
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 65 MANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
+ N+E TALH AVC G+ +VK L + G N +A++ G TPL+ AA
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGV-NVNAADSDGWTPLHCAA 111
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 18/78 (23%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
N +G T L A GH++IV LVQ G + + A+++ T LH
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQ---------------FGVN---VNAADSDGWTPLH 108
Query: 76 EAVCHGNVHVVKILTKQG 93
A NV V K L + G
Sbjct: 109 CAASCNNVQVCKFLVESG 126
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ +V++L K G D +++++G+TPL++AA + E+V LLE
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 22/101 (21%)
Query: 14 NVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA D TPL +AAK GH +IV VL++ GAD + +++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---------------GAD---VNASDSWG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LH A G++ +V++L + G D + + +GKT ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDIS 120
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTK 91
SD+ L++ A+ Q + + GAD + + +T LH A G++ +V++L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGAD---VNANDYWGHTPLHLAAMLGHLEIVEVLLK 68
Query: 92 QGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
G D + N G+TPL++AA + E+V LL+
Sbjct: 69 NGAD-VNATGNTGRTPLHLAAWADHLEIVEVLLK 101
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA G TPL +AA GH +IV VL++ GAD + N
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKN---------------GAD---VNATGNTG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LH A ++ +V++L K G D + + +GKT ++
Sbjct: 81 RTPLHLAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDIS 120
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 28/142 (19%)
Query: 9 PSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGI-----------G 57
PSL ++ +G + + +AA+FGH+ IV+ L+ AK Q D ++G+
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLI--AK-GQDVDMMDQNGMTPLMWAAYRTHS 155
Query: 58 ADRQMIRMANN---------EKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPL 108
D + + N KNTALH AV GN V+ +L + G N + N G++ L
Sbjct: 156 VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGA-NVDAQNIKGESAL 214
Query: 109 YMAAKGRYSEMVIELLETAHQC 130
+ AK R + +I L+ A Q
Sbjct: 215 DL-AKQRKNVWMINHLQEARQA 235
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIE 122
+R + E T LH A + + +VK +G + TPL+ A + + MV++
Sbjct: 35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
Query: 123 LLE 125
L++
Sbjct: 95 LMK 97
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ +V++L K G D +++ +G+TPL++AA + E+V LLE
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 22/101 (21%)
Query: 14 NVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA D TPL +AAK GH +IV VL++ GAD + ++
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---------------GAD---VNASDIWG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LH A G++ +V++L + G D + + +GKT ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDIS 120
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 18/75 (24%)
Query: 21 TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCH 80
TPL +AA GH++IV VL++ HG + + A + M++M TALH A H
Sbjct: 69 TPLHMAASEGHANIVEVLLK------HG-----ADVNA-KDMLKM------TALHWATEH 110
Query: 81 GNVHVVKILTKQGPD 95
+ VV++L K G D
Sbjct: 111 NHQEVVELLIKYGAD 125
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 22/107 (20%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G +PL +AA++GH VL++ +G+ D + T LH A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLR-------------AGVSRDAR-----TKVDRTPLHMAA 75
Query: 79 CHGNVHVVKILTKQGPDNPYSANNYGK-TPLYMAAKGRYSEMVIELL 124
G+ ++V++L K G D +A + K T L+ A + + E V+ELL
Sbjct: 76 SEGHANIVEVLLKHGAD--VNAKDMLKMTALHWATEHNHQE-VVELL 119
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
++E+L PSLLL + G PL + F +I S L+ + D +SG
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW---- 73
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNP--YSANNYGKTPLYMAAKGRYSE 118
T H A GN+ VVK L + P P N G T L++A ++ E
Sbjct: 74 -----------TPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 119 MVIELLETAHQCPMK 133
+ L+E +K
Sbjct: 122 VSQFLIENGASVRIK 136
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
++E+L PSLLL + G PL + F +I S L+ + D +SG
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW---- 73
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNP--YSANNYGKTPLYMAAKGRYSE 118
T H A GN+ VVK L + P P N G T L++A ++ E
Sbjct: 74 -----------TPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 119 MVIELLETAHQCPMK 133
+ L+E +K
Sbjct: 122 VSQFLIENGASVRIK 136
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
++E+L PSLLL + G PL + F +I S L+ + D +SG
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW---- 73
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNP--YSANNYGKTPLYMAAKGRYSE 118
T H A GN+ VVK L + P P N G T L++A ++ E
Sbjct: 74 -----------TPFHIACSVGNLEVVKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 119 MVIELLETAHQCPMK 133
+ L+E +K
Sbjct: 122 VSQFLIENGASVRIK 136
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ +V++L K G D + + +G+TPL++AA + E+V LLE
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 35.0 bits (79), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 14 NVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA D TPL +AAK GH +IV VL++ GAD + +
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH---------------GAD---VNARDIWG 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LH A G++ +V++L + G D + + +GKT ++
Sbjct: 81 RTPLHLAATVGHLEIVEVLLEYGAD-VNAQDKFGKTAFDIS 120
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 67 NNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAK 113
N E TALH A+C N +V L G N S +++G TPL+ AA
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGA-NVNSPDSHGWTPLHCAAS 96
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 15 VNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTAL 74
V A TPL A G D V++L+Q Q PES + + +
Sbjct: 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-----PESDLA--------------SPI 105
Query: 75 HEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
HEA G+V V L G + + ++ G TPLY+A + + V +LLE+
Sbjct: 106 HEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESG 157
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEM 119
R + N + +T LH AV H + +V++L G D G+TPL++A + + +
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS- 206
Query: 120 VIELL 124
V+ELL
Sbjct: 207 VLELL 211
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEM 119
R + N + +T LH AV H + +V++L G D G+TPL++A + + +
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS- 206
Query: 120 VIELL 124
V+ELL
Sbjct: 207 VLELL 211
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+ +G+TPL +A + G V VL Q+ +++ N +T LH
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL------------HSILKATNYNGHTCLH 119
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
A HG + +V++L G D G+T L++A + ++V LL+
Sbjct: 120 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
S+L N G T L +A+ G+ IV +LV +GAD N
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLV---------------SLGADVNAQEPCNGR 149
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMV 120
TALH AV N +V +L K G D N + Y Y GR S +
Sbjct: 150 --TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP---YQLTWGRPSTRI 196
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 56 IGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAK 113
+ D + NN + T LH AV + + L G D P + G TPL++A +
Sbjct: 28 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACE 84
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 51 EPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG-PDNPYSANNYGKTPLY 109
E + I AD+ + + + TALH A G+ +V+ L + G P N ++ G +PL+
Sbjct: 21 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLH 78
Query: 110 MAAKGRYSEMVIELLETAHQ 129
+AA E+V LL Q
Sbjct: 79 IAASAGRDEIVKALLGKGAQ 98
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 3 EILELCPSLLLNVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E L + VN K D +PL +AA G +IV L+ G GA
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---------------GKGA- 97
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
+ N T LH A N H + ++ +G NP + ++Y T ++ AA
Sbjct: 98 --QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + T L A GH++IV L+Q G P + ++
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--------GVP----------VNDKDDA 72
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+ LH A G +VK L +G + N G TPL+ AA E+ + LLE
Sbjct: 73 GWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
Query: 15 VNAKGDTPLRVAAKFGHSDIVSVLVQ-----TAKIAQHGDGEPESGIGADRQMIRM---- 65
VN G TPL AA +I +L++ AK + + +MI +
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 161
Query: 66 ------ANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKG 114
+ E NT LH A V K+L QG + Y N KTPL +A G
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIENKEEKTPLQVAKGG 215
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.4 bits (80), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 51 EPESGIGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG-PDNPYSANNYGKTPLY 109
E + I AD+ + + + TALH A G+ +V+ L + G P N ++ G +PL+
Sbjct: 22 ELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLH 79
Query: 110 MAAKGRYSEMVIELLETAHQ 129
+AA E+V LL Q
Sbjct: 80 IAASAGRDEIVKALLGKGAQ 99
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 22/113 (19%)
Query: 3 EILELCPSLLLNVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD 59
EI+E L + VN K D +PL +AA G +IV L+ G GA
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL---------------GKGA- 98
Query: 60 RQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
+ N T LH A N H + ++ +G NP + ++Y T ++ AA
Sbjct: 99 --QVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYEATAMHRAA 148
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + T L A GH++IV L+Q G P + ++
Sbjct: 32 SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--------GVP----------VNDKDDA 73
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+ LH A G +VK L +G + N G TPL+ AA E+ + LLE
Sbjct: 74 GWSPLHIAASAGRDEIVKALLGKGA-QVNAVNQNGCTPLHYAASKNRHEIAVMLLE 128
Score = 28.1 bits (61), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 16/115 (13%)
Query: 15 VNAKGDTPLRVAAKFGHSDIVSVLVQ-----TAKIAQHGDGEPESGIGADRQMIRM---- 65
VN G TPL AA +I +L++ AK + + +MI +
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY 162
Query: 66 ------ANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKG 114
+ E NT LH A V K+L QG + Y N KTPL +A G
Sbjct: 163 KASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGA-SIYIENKEEKTPLQVAKGG 216
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.0 bits (79), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 56 IGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG-PDNPYSANNYGKTPLYMAAKG 114
I AD+ + + + TALH A G+ +V+ L + G P N ++ G +PL++AA
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASA 83
Query: 115 RYSEMVIELL 124
E+V LL
Sbjct: 84 GXDEIVKALL 93
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 24/126 (19%)
Query: 3 EILELCPSLLLNVNAKGD---TPLRVAAKFGHSDIV-SVLVQTAKIAQHGDGEPESGIGA 58
EI+E L + VN K D +PL +AA G +IV ++LV+ A +
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-------------- 99
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
N T LH A N H + ++ +G NP + ++Y T ++ AA +
Sbjct: 100 -----NAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 119 MVIELL 124
MV LL
Sbjct: 154 MVHILL 159
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + T L A GH++IV L+Q G P + ++
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--------GVP----------VNDKDDA 72
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+ LH A G +VK L +G + + N G TPL+ AA E+ + LLE
Sbjct: 73 GWSPLHIAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 57 GADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRY 116
GAD + ++ T LH A +G + +V++L K G D ++++ G TPL++AA +
Sbjct: 29 GAD---VNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGH 84
Query: 117 SEMVIELLE 125
E+V LL+
Sbjct: 85 LEIVEVLLK 93
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 44/97 (45%), Gaps = 24/97 (24%)
Query: 5 LELCPSLLLN---VNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGA 58
LE+ LL N VNA G TPL +AA GH +IV VL++ GA
Sbjct: 52 LEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKH---------------GA 96
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPD 95
D + + T LH A G + +V++L K G D
Sbjct: 97 D---VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 56 IGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQG-PDNPYSANNYGKTPLYMAAKG 114
I AD+ + + + TALH A G+ +V+ L + G P N ++ G +PL++AA
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASA 83
Query: 115 RYSEMVIELL 124
E+V LL
Sbjct: 84 GRDEIVKALL 93
Score = 33.9 bits (76), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 24/126 (19%)
Query: 3 EILELCPSLLLNVNAKGD---TPLRVAAKFGHSDIV-SVLVQTAKIAQHGDGEPESGIGA 58
EI+E L + VN K D +PL +AA G +IV ++LV+ A +
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHV-------------- 99
Query: 59 DRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
N T LH A N H + ++ +G NP + ++Y T ++ AA +
Sbjct: 100 -----NAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 119 MVIELL 124
MV LL
Sbjct: 154 MVHILL 159
Score = 31.6 bits (70), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + T L A GH++IV L+Q G P + ++
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQL--------GVP----------VNDKDDA 72
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
+ LH A G +VK L +G + + N G TPL+ AA E+ + LLE
Sbjct: 73 GWSPLHIAASAGRDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 12/110 (10%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+ +G+TPL +A + G V VL Q+ +++ N +T LH
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL------------HSILKATNYNGHTCLH 122
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
A HG + +V++L G D G+T L++A + ++V LL+
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 56 IGADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAK 113
+ D + NN + T LH AV + + L G D P + G TPL++A +
Sbjct: 31 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACE 87
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 44/112 (39%), Gaps = 21/112 (18%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
S+L N G T L +A+ G+ IV +LV +GAD N
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLV---------------SLGADVNAQEPCNGR 152
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEMV 120
TALH AV N +V +L K G D N + Y Y GR S +
Sbjct: 153 --TALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP---YQLTWGRPSTRI 199
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 34.7 bits (78), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+ GDTPL +A G+ V LV + Q G E + + NN + T LH
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLV---NLFQQGGRE-----------LDIYNNLRQTPLH 51
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
AV VV++L G +P + + +G+T ++A + R + LL++A
Sbjct: 52 LAVITTLPSVVRLLVTAGA-SPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 62 MIRMANNEKNTALHEAVCHGN---VHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSE 118
M A+ + +T LH AV GN VH + L +QG NN +TPL++A
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 119 MVIELLETAHQCPM 132
V+ LL TA PM
Sbjct: 61 -VVRLLVTAGASPM 73
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
++ALH A G + +V+ L + G D+ N + TPL +A S VI++L
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLK-NCHNDTPLMVA----RSRRVIDILR 233
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 34.7 bits (78), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 57 GADRQMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRY 116
GAD I AN + TALH+A NV +VK L + G N +N G PL+ AA Y
Sbjct: 63 GAD---INYANVDGLTALHQACIDDNVDMVKFLVENGA-NINQPDNEGWIPLHAAASCGY 118
Query: 117 SEMVIELL 124
++ L+
Sbjct: 119 LDIAEYLI 126
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 2 EEI-LELCPSL----------LLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDG 50
EEI +EL P L L N NA + L+VA +VL + ++A D
Sbjct: 28 EEIRMELSPDLISACLALEKYLDNPNALTERELKVA-------YTTVLQEWLRLACRSDA 80
Query: 51 EPE---SGIGADRQM--------IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYS 99
PE + R M + +A++ NTALH +V H N VV+ L G
Sbjct: 81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK 140
Query: 100 ANNYGKTPLYMAA 112
N G +P+ + A
Sbjct: 141 QNRAGYSPIMLTA 153
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 34.3 bits (77), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 14 NVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTA 73
V A TPL A G D V++L+Q Q PES + +
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-----PESDLA--------------SP 160
Query: 74 LHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
+HEA G+V V L G + + ++ G TPLY+A + + V +LLE+
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESG 213
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.3 bits (77), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
++E L +L+ + +G TPL A+ FG + V L++ GAD
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GADP 62
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEM 119
++ E+ +AL A G +V +L ++ D N Y N G TPL A +G + +
Sbjct: 63 HILA---KERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVRGNHVKC 117
Query: 120 VIELLETAHQCPMKAPT 136
V LL +A +
Sbjct: 118 VEALLARGADLTTEADS 134
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 33.9 bits (76), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 23/115 (20%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNAK G TPL +A GH +IV VL++ GAD +
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKN---------------GADVNAVDAIG--- 80
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T LH A G++ + ++L K G D + + +GKT ++ G +E + E+L+
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISI-GNGNEDLAEILQ 133
Score = 32.7 bits (73), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 20/89 (22%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMAN----NEKN----TALHEAVCHGNV 83
SD+ L++ A+ Q D I MAN N K+ T L+ A HG++
Sbjct: 12 SDLGKKLLEAARAGQD-----------DEVRILMANGADVNAKDEYGLTPLYLATAHGHL 60
Query: 84 HVVKILTKQGPDNPYSANNYGKTPLYMAA 112
+V++L K G D + + G TPL++AA
Sbjct: 61 EIVEVLLKNGAD-VNAVDAIGFTPLHLAA 88
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 5 LELCPSLLLN------VNAKGDTPLRVAAKFGHSDIVSVLVQ 40
LE+ LL N V+A G TPL +AA GH +I VL++
Sbjct: 60 LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 33.9 bits (76), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 13 LNVNAKGD-TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKN 71
+NV +GD TPL +AA GH DIV L+Q AD I N N
Sbjct: 65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYK---------------AD---INAVNEHGN 106
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCP 131
LH A G V + L G N YG+ P+ AK E++ E E Q
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPV-DKAKAPLRELLRERAEKMGQNL 164
Query: 132 MKAP 135
+ P
Sbjct: 165 NRIP 168
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 33.9 bits (76), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 13 LNVNAKGD-TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKN 71
+NV +GD TPL +AA GH DIV L+Q AD I N N
Sbjct: 60 INVMNRGDDTPLHLAASHGHRDIVQKLLQYK---------------AD---INAVNEHGN 101
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCP 131
LH A G V + L G N YG+ P+ AK E++ E E Q
Sbjct: 102 VPLHYACFWGQDQVAEDLVANGALVSI-CNKYGEMPVD-KAKAPLRELLRERAEKMGQNL 159
Query: 132 MKAP 135
+ P
Sbjct: 160 NRIP 163
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 23/107 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
N+NA+ G TPL +AA+ +V L I AD I A+N
Sbjct: 110 NLNARMHDGTTPLILAARLAIEGMVEDL-----------------ITADAD-INAADNSG 151
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAK-GRY 116
TALH A N V IL N + ++ +TPL++AA+ G Y
Sbjct: 152 KTALHWAAAVNNTEAVNILLMHHA-NRDAQDDKDETPLFLAAREGSY 197
Score = 29.3 bits (64), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 66 ANNEKNTA---LHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIE 122
AN++ NT LH AV + V +IL + N + + G TPL +AA+ MV +
Sbjct: 77 ANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED 136
Query: 123 LL 124
L+
Sbjct: 137 LI 138
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 22/101 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNA+ G TPL +AA H +IV VL++ GAD I
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN---------------GADVNAIDAIGE-- 81
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LH +G++ +V++L K G D + + +GKT ++
Sbjct: 82 -TPLHLVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDIS 120
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 1 MEEILELCPSLLLN------VNAKGDTPLRVAAKFGHSDIVSVLVQ 40
M + LE+ LL N ++A G+TPL + A +GH +IV VL++
Sbjct: 56 MNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 32.7 bits (73), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 21/125 (16%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
++E L +L+ + +G TPL A+ FG + V L++ GAD
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW---------------GADP 62
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPD-NPYSANNYGKTPLYMAAKGRYSEM 119
++ E+ +AL A G +V +L ++ D N Y N G TPL A G + +
Sbjct: 63 HILA---KERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYAVHGNHVKC 117
Query: 120 VIELL 124
V LL
Sbjct: 118 VEALL 122
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 31.2 bits (69), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 24/79 (30%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGAD---RQMIRMANNEKNT 72
N +G+TPL VA+K+G S+IV L++ +GAD R + + T
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE---------------LGADISARDLTGL------T 169
Query: 73 ALHEAVCHGNVHVVKILTK 91
A A G V+KI T+
Sbjct: 170 AEASARIFGRQEVIKIFTE 188
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 21 TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGI---------GADRQMIRMANN--- 68
TPL VA G + + LV+ + D E + + G +++ +N
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 69 ---EKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
T L ++ G + L + G N N G+TPL +A+K SE+V +LLE
Sbjct: 97 KDFSGKTPLMWSIIFGYSEMSYFLLEHGA-NVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 126 TAHQCPMKAPT 136
+ T
Sbjct: 156 LGADISARDLT 166
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.8 bits (68), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
Query: 14 NVNAKGD---TPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
NVN K TPL VAA+ H+D++ VL H G + + + Q
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVL--------HKHGAKMNALDSLGQ--------- 281
Query: 71 NTALHEAVCHGNVHVVKILTKQGPD 95
TALH A G++ ++L G D
Sbjct: 282 -TALHRAALAGHLQTCRLLLSYGSD 305
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+V+AK G PL A +GH ++ +L++ HG + + +
Sbjct: 83 DVHAKDKGGLVPLHNACSYGHYEVTELLLK------HG------------ACVNAMDLWQ 124
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
T LHEA V V +L G D P N +GK+ + MA
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMA 164
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 66 ANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA-AKGRYSEMVIELL 124
++ K+T LH A + V +V++L + G D ++ + G PL+ A + G Y V ELL
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYE--VTELL 110
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 74 LHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
L EA G V+IL G D N G TPL++AA+ + E+V LLE
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAG 80
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKN--TALHEAVCHGNVHVVKIL 89
SD+ L++ A+ Q + GAD +A +KN T LH A +G++ VVK+L
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLL 76
Query: 90 TKQGPDNPYSANNYGKTPLYMA 111
+ G D + + +GKT ++
Sbjct: 77 LEAGAD-VXAQDKFGKTAFDIS 97
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 74 LHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
L EA G V+IL G D N G TPL++AA+ + E+V LLE
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEA 61
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 32 SDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKN--TALHEAVCHGNVHVVKIL 89
SD+ L++ A+ Q + GAD +A +KN T LH A +G++ VVK+L
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGAD-----VAAKDKNGSTPLHLAARNGHLEVVKLL 58
Query: 90 TKQGPDNPYSANNYGKTPLYMA 111
+ G D + + +GKT ++
Sbjct: 59 LEAGAD-VNAQDKFGKTAFDIS 79
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQT 41
G TPL +AA+ GH ++V +L++
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEA 61
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + G+T L +AA++ SD L++ + A + +N
Sbjct: 49 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------------IQDNM 90
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
T LH AV V +IL + + + + G TPL +AA+ M+ +L+ +
Sbjct: 91 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 147
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 30.0 bits (66), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
+++L LC + N +G+ +AAK + + LV+T ++ ++ I A
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT-LVKTKELIKNY-------ITARI 131
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPY 98
R + + N+AL AV GN +V I QG + Y
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 1 MEEILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADR 60
+++L LC + N +G+ +AAK + + LV+T ++ ++ I A
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT-LVKTKELIKNY-------ITARI 131
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPY 98
R + + N+AL AV GN +V I QG + Y
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + G+T L +AA++ SD L++ + A + +N
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------------IQDNM 89
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
T LH AV V +IL + + + + G TPL +AA+ M+ +L+ +
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 53 ESGIGADRQMIRMANNEK---NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLY 109
E G D ++EK TALH A N +VK L + N + GKTP+
Sbjct: 259 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIX 318
Query: 110 MAAKGRYSEMVIELLETAHQCPMKAPTERQLCMLQQCT 147
+AA+ E+V L++ T+ L Q
Sbjct: 319 LAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQAN 356
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 30.0 bits (66), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 25/121 (20%)
Query: 17 AKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHE 76
A G+T L +AA + + + VL++ A PE + E TALH
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAA---------PELVFEPMTSELY----EGQTALHI 81
Query: 77 AVCHGNVHVVKILTKQGPD------------NPYSANNYGKTPLYMAAKGRYSEMVIELL 124
AV + NV++V+ L +G P++ YG+ PL AA E+V L+
Sbjct: 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141
Query: 125 E 125
E
Sbjct: 142 E 142
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 30.0 bits (66), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 18/75 (24%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G TPL A GH +V +L+Q + ++ + ++ LH+A
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH------------------KALVNTTGYQNDSPLHDAA 84
Query: 79 CHGNVHVVKILTKQG 93
+G+V +VK+L G
Sbjct: 85 KNGHVDIVKLLLSYG 99
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 3 EILELCPSLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQ 40
E+L +L+ + D+PL AAK GH DIV +L+
Sbjct: 60 ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 65 MANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
N+ T LH A G++ V+ L + G D P ++ G TPL+ A + + V+ELL
Sbjct: 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLK-VVELL 62
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.6 bits (65), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 69 EKNTALHEAVCHGNVHVVKILTKQGPDNPYSANN------------YGKTPLYMAAKGRY 116
+ ++ALH A+ ++ VK+L + G D A +G+ PL +AA +
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 117 SEMVIELLETAHQ 129
++V LLE HQ
Sbjct: 149 WDVVTYLLENPHQ 161
Score = 26.6 bits (57), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 7 LCPSLLLN--VNAKGDTPLRVAAKFGHSDIVSVLVQ 40
LCP++ L N +G TPL++AAK G +I ++Q
Sbjct: 207 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability
Of Designed Ankyrin Repeat Proteins With A Redesigned
C- Capping Module
Length = 91
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 21/81 (25%)
Query: 14 NVNAK---GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEK 70
+VNAK G TPL +AA+ GH +IV VL++ GAD + +
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKA---------------GAD---VNAQDKFG 68
Query: 71 NTALHEAVCHGNVHVVKILTK 91
TA ++ +GN + +IL K
Sbjct: 69 KTAFDISIDNGNEDLAEILQK 89
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 20/102 (19%)
Query: 26 AAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHGNVHV 85
AA+ G D V +L+ GAD + + + T LH A G++ +
Sbjct: 9 AARAGQDDEVRILMAN---------------GAD---VNAKDKDGYTPLHLAAREGHLEI 50
Query: 86 VKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETA 127
V++L K G D + + +GKT ++ +E + E+L+ A
Sbjct: 51 VEVLLKAGAD-VNAQDKFGKTAFDISID-NGNEDLAEILQKA 90
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 29.6 bits (65), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 18/117 (15%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + G+T L +AA++ SD L++ + A + +N
Sbjct: 16 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN------------------IQDNM 57
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
T LH AV V +IL + + + + G TPL +AA+ M+ +L+ +
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 114
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G T L AA+ GH +++ +L+ +GAD + +N AL A+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDE--------------MGAD---VNACDNMGRNALIHAL 190
Query: 79 CHGNVHVVKILTKQGPDNPYSAN---NYGKTPLYMAAKGRYSEMVIELLETAH 128
+ V+ +T D+ N GKTPL +A + ++ +V LLE H
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243
Score = 26.6 bits (57), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
T LH AV +V++L + G D P G TP +AA
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAA 80
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 69 EKNTALHEAVCHGNVHVVKILTKQGPDNPYSANN------------YGKTPLYMAAKGRY 116
+ ++ALH A+ ++ VK+L + G D A +G+ PL +AA +
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 117 SEMVIELLETAHQ 129
++V LLE HQ
Sbjct: 162 WDVVTYLLENPHQ 174
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 7 LCPSLLLN--VNAKGDTPLRVAAKFGHSDIVSVLVQ 40
LCP++ L N +G TPL++AAK G +I ++Q
Sbjct: 220 LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 255
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.3 bits (64), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 19 GDTPLRVAAKFGHSDIVSVL-VQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEA 77
G +P V + + +D+VS A+ D + S + DR + + N + TAL
Sbjct: 25 GHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGR-TALLFV 83
Query: 78 VCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPMKAPTE 137
G+ V++L + G D + G T L+MAA E+V L+E ++ E
Sbjct: 84 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG--ADIEVEDE 141
Query: 138 RQLCMLQQCTFIL 150
R L L+ IL
Sbjct: 142 RGLTALELAREIL 154
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 22 PLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAVCHG 81
PL AA + IV +L+ SG+ D Q +++ NTAL+ AV G
Sbjct: 65 PLHQAATLEDTKIVKILLF-------------SGLD-DSQF----DDKGNTALYYAVDSG 106
Query: 82 NVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPMKAPTERQLC 141
N VK+ K+ + KT Y A +V L + P+ L
Sbjct: 107 NXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYFLS-------EIPSTFDLA 159
Query: 142 MLQQCTFI 149
+L C I
Sbjct: 160 ILLSCIHI 167
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G+T L +AA++ SD L++ + A + +N T LH AV
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAX------------------IQDNMGRTPLHAAV 63
Query: 79 CHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
V +IL + + + + G TPL +AA+ M+ +L+ +
Sbjct: 64 SADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINS 111
>pdb|4AJW|A Chain A, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors
For The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
pdb|4AJW|B Chain B, Discovery And Optimization Of New Benzimidazole- And
Benzoxazole- Pyrimidone Selective Pi3kbeta Inhibitors
For The Treatment Of Phosphatase And Tensin Homologue
(Pten)-Deficient Cancers
Length = 934
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 76 EAVCHGNVHVVKILTKQGP--DNPYSANNYGKTPLYMAAKGRYSEMV---------IELL 124
EA C G+ H +K+L KQG + N++ K K + EM+ +E L
Sbjct: 559 EAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEAL 618
Query: 125 ETAHQCPMKAPTERQLCMLQQCTFI 149
+ Q P+ T + ++QCTF+
Sbjct: 619 -SHLQSPLDPSTLLEEVCVEQCTFM 642
>pdb|2WXF|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Pik-39.
pdb|2WXG|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw13.
pdb|2WXH|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Sw14.
pdb|2WXI|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Sw30.
pdb|2WXJ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink654.
pdb|2WXK|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ink666.
pdb|2WXL|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Zstk474.
pdb|2WXM|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Dl06.
pdb|2WXN|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-kinase
P110delta In Complex With Dl07.
pdb|2WXO|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As5.
pdb|2WXP|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Gdc-0941.
pdb|2WXQ|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With As15.
pdb|2WXR|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta.
pdb|2X38|A Chain A, The Crystal Structure Of The Murine Class Ia Pi 3-Kinase
P110delta In Complex With Ic87114
Length = 940
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 12/85 (14%)
Query: 76 EAVCHGNVHVVKILTKQGP--DNPYSANNYGKTPLYMAAKGRYSEMV---------IELL 124
EA C G+ H +K+L KQG + N++ K K + EM+ +E L
Sbjct: 565 EAYCRGSTHHMKVLMKQGEALSKLKALNDFVKVSSQKTTKPQTKEMMHMCMRQETYMEAL 624
Query: 125 ETAHQCPMKAPTERQLCMLQQCTFI 149
+ Q P+ T + ++QCTF+
Sbjct: 625 -SHLQSPLDPSTLLEEVCVEQCTFM 648
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 20/113 (17%)
Query: 19 GDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEAV 78
G T L AA+ GH +++ +L+ +GAD + +N AL A+
Sbjct: 168 GATALMDAAEKGHVEVLKILLDE--------------MGAD---VNACDNMGRNALIHAL 210
Query: 79 CHGNVHVVKILTKQGPDNPYSAN---NYGKTPLYMAAKGRYSEMVIELLETAH 128
+ V+ +T D+ N GKTPL +A + ++ +V LLE H
Sbjct: 211 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263
Score = 26.2 bits (56), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
T LH AV +V++L + G D P G TP +AA
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAA 100
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74 LHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELL 124
L A G V V+ L + G NP + N+YG+ P+ + G S V ELL
Sbjct: 16 LATAAARGRVEEVRALLEAGA-NPNAPNSYGRRPIQVMMMG--SARVAELL 63
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 19 GDTPLRVAAKFGHSDIVSVL-VQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALHEA 77
G +P V + + +D+VS A+ D + S + DR + + N + TAL
Sbjct: 26 GHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLEDRDVDAVDENGR-TALLFV 84
Query: 78 VCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPMKAPTE 137
G+ V++L + G D + G T L+MAA E+V L+E ++ E
Sbjct: 85 AGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG--ADIEVEDE 142
Query: 138 RQLCMLQQCTFIL 150
R L L+ IL
Sbjct: 143 RGLTALELAREIL 155
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +NE N LH A G++ VV+ L K N N+ G T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +NE N LH A G++ VV+ L K N N+ G T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +NE N LH A G++ VV+ L K N N+ G T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +NE N LH A G++ VV+ L K N N+ G T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMA 111
+ + +NE N LH A G++ VV+ L K N N+ G T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 3 EILELCPSLLLNVNAK-GDTPLRVAAKFGHSDIVSVLV 39
E L P++ LN K GDT L AA G++DIV +L+
Sbjct: 123 EXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 27.7 bits (60), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 17/79 (21%)
Query: 15 VNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTAL 74
++ G T L A GH DIV L I + N +TAL
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEXLFTQPNIE-----------------LNQQNKLGDTAL 144
Query: 75 HEAVCHGNVHVVKILTKQG 93
H A G +V++L +G
Sbjct: 145 HAAAWKGYADIVQLLLAKG 163
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 62 MIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
+I + E T L A HG + VV+ L + G D P ++ L +A Y+++V
Sbjct: 26 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVK 84
Query: 122 ELLE 125
LL+
Sbjct: 85 MLLD 88
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 62 MIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
+I + E T L A HG + VV+ L + G D P ++ L +A Y+++V
Sbjct: 28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVK 86
Query: 122 ELLE 125
LL+
Sbjct: 87 MLLD 90
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 27.7 bits (60), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 62 MIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
+I + E T L A HG + VV+ L + G D P ++ L +A Y+++V
Sbjct: 44 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVK 102
Query: 122 ELLE 125
LL+
Sbjct: 103 MLLD 106
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 10 SLLLNVNAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNE 69
SL + G T L +AA + SD L++ + A + +N
Sbjct: 48 SLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADAN------------------IQDNM 89
Query: 70 KNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLET 126
T LH AV V +IL + + + + G TPL +AA+ M+ +L+ +
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 21/117 (17%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+ G +P+ AA+ G D + VLV+ GAD + + + +H
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEH---------------GAD---VNVPDGTGALPIH 112
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLETAHQCPM 132
AV G+ VV L + + + + G TPL +A + R ++ ++++L+ P+
Sbjct: 113 LAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQ-RGAQDLVDILQGHMVAPL 166
>pdb|2SFA|A Chain A, Serine Proteinase From Streptomyces Fradiae Atcc 14544
Length = 191
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 21 TPLRVAAKFGHSDIVSVLVQTAKIAQHGD 49
T L +G DIVS L+QT A+ GD
Sbjct: 118 TGLNATVNYGGGDIVSGLIQTNVCAEPGD 146
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPDNPYSANN-------------YGKTPLYMAAKGRYSE 118
TALH A+ N +V +L + G D +AN +G+ PL +AA
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 119 MVIELLETAHQ 129
+V LL+ + Q
Sbjct: 163 IVKFLLQNSWQ 173
>pdb|3DYM|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3DYM|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418e)
pdb|3E1F|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
pdb|3E1F|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (H418e) In Complex With
Galactose
Length = 1023
Score = 26.6 bits (57), Expect = 6.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETEGMVPMNRLTD 428
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 61 QMIRMANNEKNTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAA 112
M+ ++ +T L+ A GN+ +V L G D P+ AN G P+ A
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 324
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAK--GRYSEMVIE-LLETA 127
NT LH N+ +VK L K G + Y +N G++ L A K Y E LL+
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYL 190
Query: 128 HQC 130
+ C
Sbjct: 191 YPC 193
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 71 NTALHEAVCHGNVHVVKILTKQGPDNPYSANN------------YGKTPLYMAAKGRYSE 118
++ALH A+ ++ VK+L + G + A +G+ PL +AA + +
Sbjct: 96 HSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQWD 155
Query: 119 MVIELLETAHQCPMKAPTERQ 139
+V LLE HQ T+ Q
Sbjct: 156 VVSYLLENPHQPASLQATDSQ 176
>pdb|3DYO|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYO|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n) In Complex With
Iptg
pdb|3DYP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (H418n)
pdb|3DYP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (H418n)
Length = 1023
Score = 26.2 bits (56), Expect = 7.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETNGMVPMNRLTD 428
>pdb|1PX3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a)
pdb|1PX4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
pdb|1PX4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (G794a) With Iptg Bound
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|1F49|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|E Chain E, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|F Chain F, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|G Chain G, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1F49|H Chain H, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|I Chain I, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|J Chain J, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|K Chain K, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|L Chain L, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|M Chain M, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|N Chain N, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|O Chain O, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1GHO|P Chain P, E. Coli (Lac Z) Beta-Galactosidase (Ncs Constrained
Monomer- Monoclinic)
pdb|1JZ1|I Chain I, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|J Chain J, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|K Chain K, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|L Chain L, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|M Chain M, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|N Chain N, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|O Chain O, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ1|P Chain P, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains I-P, See Remark 400
pdb|1JZ0|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|E Chain E, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|F Chain F, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|G Chain G, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JZ0|H Chain H, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate. Chains A-H, See Remark 400
pdb|1JYZ|I Chain I, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|J Chain J, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|K Chain K, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|L Chain L, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|M Chain M, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|N Chain N, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|O Chain O, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYZ|P Chain P, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains I-P, See Remark 400.
pdb|1JYY|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|E Chain E, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|F Chain F, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|G Chain G, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400.
pdb|1JYY|H Chain H, E. Coli (Lacz) Beta-Galactosidase In Complex With 2-F-
Lactose. Chains A-H, See Remark 400
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|1BGM|I Chain I, Beta-Galactosidase (Chains I-P)
pdb|1BGM|J Chain J, Beta-Galactosidase (Chains I-P)
pdb|1BGM|K Chain K, Beta-Galactosidase (Chains I-P)
pdb|1BGM|L Chain L, Beta-Galactosidase (Chains I-P)
pdb|1BGM|M Chain M, Beta-Galactosidase (Chains I-P)
pdb|1BGM|N Chain N, Beta-Galactosidase (Chains I-P)
pdb|1BGM|O Chain O, Beta-Galactosidase (Chains I-P)
pdb|1BGM|P Chain P, Beta-Galactosidase (Chains I-P)
pdb|1BGL|A Chain A, Beta-Galactosidase (Chains A-H)
pdb|1BGL|B Chain B, Beta-Galactosidase (Chains A-H)
pdb|1BGL|C Chain C, Beta-Galactosidase (Chains A-H)
pdb|1BGL|D Chain D, Beta-Galactosidase (Chains A-H)
pdb|1BGL|E Chain E, Beta-Galactosidase (Chains A-H)
pdb|1BGL|F Chain F, Beta-Galactosidase (Chains A-H)
pdb|1BGL|G Chain G, Beta-Galactosidase (Chains A-H)
pdb|1BGL|H Chain H, Beta-Galactosidase (Chains A-H)
pdb|1JZ2|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
pdb|1JZ2|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-F-Galactosyl-
Enzyme Intermediate (Orthorhombic)
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|1JZ8|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JZ8|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Allolactose
pdb|1JYW|A Chain A, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|B Chain B, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|C Chain C, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYW|D Chain D, E. Coli (lacz) Beta-galactosidase (e537q) In Complex With
Pnpg
pdb|1JYV|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYV|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Onpg
pdb|1JYN|A Chain A, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|B Chain B, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|C Chain C, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
pdb|1JYN|D Chain D, E. Coli (Lacz) Beta-Galactosidase (E537q) In Complex With
Lactose
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|1F4A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained
Monomer- Orthorhombic)
pdb|1F4H|A Chain A, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|B Chain B, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|C Chain C, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
pdb|1F4H|D Chain D, E. Coli (Lacz) Beta-Galactosidase (Orthorhombic)
Length = 1021
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 349 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 408
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 409 DEANIETHGMVPMNRLTD 426
>pdb|3VDA|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDA|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t)
pdb|3VDB|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDB|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Galactonolactone
pdb|3VDC|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
pdb|3VDC|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
Iptg
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3VD5|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD5|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s)
pdb|3VD7|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD7|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Galactotetrazole
pdb|3VD9|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
pdb|3VD9|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460s) In Complex With
Iptg
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3VD3|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD3|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d)
pdb|3VD4|A Chain A, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|B Chain B, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|C Chain C, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
pdb|3VD4|D Chain D, E. Coli (Lacz) Beta-Galactosidase (N460d) In Complex With
Iptg
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3T2O|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2O|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d)
pdb|3T2P|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2P|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Iptg
pdb|3T2Q|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
pdb|3T2Q|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796d) In Complex With
Galactonolactone
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3T0A|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0A|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t)
pdb|3T0B|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0B|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796t) Iptg Complex
pdb|3T0D|A Chain A, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|B Chain B, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|C Chain C, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
pdb|3T0D|D Chain D, E.Coli (Lacz) Beta-Galactosidase (S796t) In Complex With
Galactonolactone
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3SEP|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3SEP|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a)
pdb|3T08|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T08|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Iptg Complex
pdb|3T09|A Chain A, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|B Chain B, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|C Chain C, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
pdb|3T09|D Chain D, E. Coli (Lacz) Beta-Galactosidase (S796a) Galactonolactone
Complex
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3MUZ|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MUZ|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Iptg
pdb|3MV0|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV0|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
D- Galctopyranosyl-1-One
pdb|3MV1|1 Chain 1, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|2 Chain 2, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|3 Chain 3, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
pdb|3MV1|4 Chain 4, E.Coli (Lacz) Beta-Galactosidase (R599a) In Complex With
Guanidinium
Length = 1052
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 380 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 439
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 440 DEANIETHGMVPMNRLTD 457
>pdb|3MUY|1 Chain 1, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|2 Chain 2, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|3 Chain 3, E. Coli (Lacz) Beta-Galactosidase (R599a)
pdb|3MUY|4 Chain 4, E. Coli (Lacz) Beta-Galactosidase (R599a)
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|3I3B|A Chain A, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|B Chain B, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|C Chain C, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3B|D Chain D, E.Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
D- Galactopyranosyl-1-On
pdb|3I3D|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3D|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a) In Complex With
Iptg
pdb|3I3E|A Chain A, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|B Chain B, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|C Chain C, E. Coli (Lacz) Beta-Galactosidase (M542a)
pdb|3I3E|D Chain D, E. Coli (Lacz) Beta-Galactosidase (M542a)
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|3CZJ|A Chain A, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|B Chain B, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|C Chain C, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
pdb|3CZJ|D Chain D, "e. Coli (Lacz) Beta-Galactosidase (N460t) In Complex With
D- Galctopyranosyl-1-One"
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|1JZ7|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
pdb|1JZ7|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With
Galactose
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|1DP0|A Chain A, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|B Chain B, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|C Chain C, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1DP0|D Chain D, E. Coli Beta-Galactosidase At 1.7 Angstrom
pdb|1JZ6|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ6|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Galacto-
Tetrazole
pdb|1JZ5|A Chain A, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|B Chain B, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|C Chain C, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ5|D Chain D, E. Coli (lacz) Beta-galactosidase In Complex With
D-galctopyranosyl-1- On
pdb|1JZ4|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ4|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl-Enzyme Intermediate (Low Bis-Tris)
pdb|1JZ3|A Chain A, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|B Chain B, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|C Chain C, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JZ3|D Chain D, E. Coli (Lacz) Beta-Galactosidase-Trapped 2-Deoxy-
Galactosyl Enzyme Intermediate
pdb|1JYX|A Chain A, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|B Chain B, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|C Chain C, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1JYX|D Chain D, E. Coli (Lacz) Beta-Galactosidase In Complex With Iptg
pdb|1HN1|A Chain A, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|B Chain B, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|C Chain C, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
pdb|1HN1|D Chain D, E. Coli (Lac Z) Beta-Galactosidase (Orthorhombic)
Length = 1023
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 63 IRMANNEKNTALHEAVCHGNVHVVKIL-TKQGPDNPYSANNYGKTPLYMAAKGRYSEMVI 121
IR N ++ LH V V IL KQ N ++Y PL+ RY V+
Sbjct: 351 IRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSHYPNHPLWYTLCDRYGLYVV 410
Query: 122 EL--LETAHQCPMKAPTE 137
+ +ET PM T+
Sbjct: 411 DEANIETHGMVPMNRLTD 428
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 26.2 bits (56), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 72 TALHEAVCHGNVHVVKILTKQGPD----------NPYSANNY---GKTPLYMAAKGRYSE 118
TALH A+ H V++L QG D P Y G+ PL +AA
Sbjct: 93 TALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPH 152
Query: 119 MVIELLETAHQCPMKAPTERQ 139
+V L E H+ KA RQ
Sbjct: 153 IVNYLTENPHK---KADMRRQ 170
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 21/110 (19%)
Query: 16 NAKGDTPLRVAAKFGHSDIVSVLVQTAKIAQHGDGEPESGIGADRQMIRMANNEKNTALH 75
+ G +P+ AA+ G D + VLV+ GAD + + + +H
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEH---------------GAD---VNVPDGTGALPIH 106
Query: 76 EAVCHGNVHVVKILTKQGPDNPYSANNYGKTPLYMAAKGRYSEMVIELLE 125
AV G+ VV L + + + + G TPL +A + R ++ ++++L+
Sbjct: 107 LAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQ-RGAQDLVDILQ 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,628,406
Number of Sequences: 62578
Number of extensions: 175780
Number of successful extensions: 948
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 298
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)