BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037413
(530 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PW4|A Chain A, Crystal Structure Of The Glycerol-3-Phosphate Transporter
From E.Coli
Length = 451
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 108/289 (37%), Gaps = 67/289 (23%)
Query: 45 SEHKAKVFKIFSLASPHMTTFHLSWLSFFTCFVSTFAAAPLVPIIRDNLNLI-------- 96
+ HKA++ A T L W F F +AA LV R N L
Sbjct: 7 APHKARL----PAAEIDPTYRRLRWQIFLGIFFG-YAAYYLV---RKNFALAMPYLVEQG 58
Query: 97 --KTDIGNA--GIASVSGSIFSRLVMGAVCDLLGPRYGCAFLIMLSAPTVFSMVFVSSAR 152
+ D+G A GI+ G FS+ +MG+V D PR ++L+A + M FV A
Sbjct: 59 FSRGDLGFALSGISIAYG--FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 116
Query: 153 GYIAARFMIGFSLATFV---------SCQYWMSTMFNGKIIGLVXXXXXXXXXXXXXITQ 203
IA F++ F F + +W S G I+ + +
Sbjct: 117 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV--------WNCAHNVGG 168
Query: 204 LLTPFIYELIRRAGATPFTAWRIAFFAPGCLHVIMGILVLTLGQDLPD--GNLNTLQKKG 261
+ P ++ L G F W A + P +++ + + +D P G + K
Sbjct: 169 GIPPLLFLL----GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224
Query: 262 DVPTDK------------------FP-KVLWY-AITNYRTWIFVLLYGM 290
D P D P K+LWY AI N ++++L YG+
Sbjct: 225 DYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIAN--VFVYLLRYGI 271
>pdb|2I51|A Chain A, Crystal Structure Of A Pyridoxamine 5'-Phosphate
Oxidase-Related, Fmn Binding Protein (Npun_f5749) From
Nostoc Punctiforme Pcc 73102 At 1.40 A Resolution
pdb|2I51|B Chain B, Crystal Structure Of A Pyridoxamine 5'-Phosphate
Oxidase-Related, Fmn Binding Protein (Npun_f5749) From
Nostoc Punctiforme Pcc 73102 At 1.40 A Resolution
Length = 195
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 1/107 (0%)
Query: 421 FGSGLTQLLFFTSSRHSTATGISLMGIMIVCCTFPVALVHFPQWGSMFLPATKDSEKSKE 480
F QL F T +R + A I +C FP F G + L ++ DS + +
Sbjct: 48 FLEDTNQLRFITDTRSAKADQIQQQPWAEICWYFPNTREQFRXAGDLTLISSDDSHQDLQ 107
Query: 481 EYYYGAEWNEEEKQRGLHHGSLKFAENSRSERGKRVGSDPTPISATP 527
A W E L G + E G S P PI P
Sbjct: 108 PARI-AXWQELSDAARLQFGWPYPGKPRIKESGAFEPSPPDPIEPVP 153
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 55 FSLASPHMTTFHLSWLS---FFTCFVSTFAAAPLVPIIRDNLNLIKT 98
F+ AS + H + LS FF V+ + P+VP++ + LN++KT
Sbjct: 41 FTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKT 87
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside
Diphosphate Kinase: X- Ray Structures Of A
Phospho-Histidine Intermediate Of The Enzymes From
Drosophila And Dictyostelium
Length = 153
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 55 FSLASPHMTTFHLSWLS---FFTCFVSTFAAAPLVPIIRDNLNLIKT 98
F+ AS + H + LS FF V+ + P+VP++ + LN++KT
Sbjct: 41 FTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKT 87
>pdb|3IMF|A Chain A, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|B Chain B, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|C Chain C, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
pdb|3IMF|D Chain D, 1.99 Angstrom Resolution Crystal Structure Of A Short
Chain Dehydrogenase From Bacillus Anthracis Str. 'ames
Ancestor'
Length = 257
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 288 YGMSLGIELTIDNVIAEYFFDRFNLKLHT----AGVIAATFGMANIFARPLGGLMSDMAA 343
Y + GI+ I N +A Y +D +H+ AGV+A T +A + R G ++ +A
Sbjct: 128 YWIEKGIKGNIINXVATYAWDAGPGVIHSAAAKAGVLAXTKTLAVEWGRKYGIRVNAIAP 187
Query: 344 RPFGMRGRLWNLYIVQTLGG--IFCICLGRASTLPLSILSMILFSITTQAA 392
P G L+I + I + LGR T P I + + + +AA
Sbjct: 188 GPIERTGGADKLWISEEXAKRTIQSVPLGRLGT-PEEIAGLAYYLCSDEAA 237
>pdb|2QN0|A Chain A, Structure Of Botulinum Neurotoxin Serotype C1 Light Chain
Protease
Length = 430
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 287 LYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPF 346
LYG+++ + TI +V + F+ ++N+KL A + A F P L+ A + F
Sbjct: 238 LYGIAIPNDQTISSVTSNIFYSQYNVKLEYAEIYA--------FGGPTIDLIPKSARKYF 289
Query: 347 GMRGRLWNLYIVQTLGGI 364
+ + I + L I
Sbjct: 290 EEKALDYYRSIAKRLNSI 307
>pdb|3DEB|A Chain A, Crystal Structure Of Apo Form (Zinc Removed) Of The
Botulinum Neurotoxin Type C Light Chain
Length = 450
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 8/78 (10%)
Query: 287 LYGMSLGIELTIDNVIAEYFFDRFNLKLHTAGVIAATFGMANIFARPLGGLMSDMAARPF 346
LYG+++ + TI +V + F+ ++N+KL A + A F P L+ A + F
Sbjct: 258 LYGIAIPNDQTISSVTSNIFYSQYNVKLEYAEIYA--------FGGPTIDLIPKSARKYF 309
Query: 347 GMRGRLWNLYIVQTLGGI 364
+ + I + L I
Sbjct: 310 EEKALDYYRSIAKRLNSI 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,979,578
Number of Sequences: 62578
Number of extensions: 583622
Number of successful extensions: 1388
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1384
Number of HSP's gapped (non-prelim): 10
length of query: 530
length of database: 14,973,337
effective HSP length: 103
effective length of query: 427
effective length of database: 8,527,803
effective search space: 3641371881
effective search space used: 3641371881
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)